Citrus Sinensis ID: 010533

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------51
Protein Sequence
MRTVPKSYYKHFSNSEQIDFQKQSSLITLPQPRAHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMVSRNLSDRQRRTTKSARMQPLMH
Secondary Structure (PSIPRED)
cccccHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHcccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHHccccHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHcHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEcccccccEcHHccccEEcccccccccccccccccEEHHHHHHHHcccccccEEEcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHccHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mrtvpksyykhfsnseqidfqkqsslitlpqprahpfvpkdhpffvrtdltahemgppktvrTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLqgvdlsgivkcvpgesslkdnplIQSLERLkqldlnskdkfsdeDLNEMMGLFDKLIELcggnegsvNAAVATKNGGVELVCSICYkmrcgskrvLDSCLKTMALLVHDvqstetfrtgggpKLLVNILidgnedpeilNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLltpdddqvvASQVYGYARRFAKIGIARALVHSLhaglsspslISASIALKAVAVNDEICKSVAENGGIDALLRCIddsglqgnKTVARICCSLLsklagsdsnksaiienggMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLkfpnaqqlqrSSCFMIRNLVARNPENSFCSVMVSRNlsdrqrrttksarmqplmh
Flexible Loop (DISEMBL)
MRTVPKSYYKHfsnseqidfqKQSSLITLPQPRAHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPgesslkdnplIQSLErlkqldlnskdkfsdEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVqstetfrtgggpKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLsklagsdsnksAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMvsrnlsdrqrrttksarmqplmh
Low Complexity Region (SEG)
MRTVPKSYYKHFSNSEQIDFQKQSSLITLPQPRAHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMelkidelileilSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHaglsspslisasialkavaVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMVSRNLSDRQRRTTKSARMQPLMH
Disordered region (IsUnstruct)
*************************************V*KDHPFFVRTDLT**************************************DAIQTLSLQGVDLSGIVKCVP*********************************NEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSD*NKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL****************LAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVM***********************
Disordered Region (DISOPRED)
******SYYKHFSN**********************FVPKDHPFFVRTDL*************ISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSG******************SLERLKQ***************EMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMVSRNLSDRQR*************
Disordered Region (DISEMBL)
MRTVPKSYYKHFSNSEQIDFQKQSSLITLPQPRAHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMVSRNLS*****************
Disordered Region (DISPRO)
***VPKSYYKHFSNSEQIDFQKQSSLITLPQPRAHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMVSRNLSDRQRRTTKSAR******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRTVPKSYYKHFSNSEQIDFQKQSSLITLPQPRAHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMVSRNLSDRQRRTTKSARMQPLMH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	508	2.2.26 [Sep-21-2011]
Q6NXE6	501	Armadillo repeat-containi	yes	no	0.785	0.796	0.244	4e-27
Q5RD03	501	Armadillo repeat-containi	yes	no	0.779	0.790	0.245	4e-27
Q8BNU0	468	Armadillo repeat-containi	yes	no	0.785	0.852	0.254	3e-25
Q7K486	464	Armadillo repeat-containi	yes	no	0.816	0.894	0.227	5e-20

>sp|Q6NXE6|ARMC6_HUMAN Armadillo repeat-containing protein 6 OS=Homo sapiens GN=ARMC6 PE=1 SV=2

 Score =  123 bits (308), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 106/433 (24%), Positives = 197/433 (45%), Gaps = 34/433 (7%)

Query: 62  RTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESS-LKDNPL 120
           + I+QE FD  V+EN+E+  M P EA+++A++    QGVDLS IVK  P  S+     P 
Sbjct: 29  KRIAQETFDAAVRENIEEFAMGPEEAVKEAVEQFESQGVDLSNIVKTAPKVSADGSQEPT 88

Query: 121 IQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCS 180
              L+ L  L    ++  +     E+     +  + C  ++      +A + G   ++ +
Sbjct: 89  HDILQMLSDL----QESVASSRPQEVSAYLTRFCDQCKQDKAC--RFLAAQKGAYPIIFT 142

Query: 181 ICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGF 240
                  G + +L   L  +++L              G +LLV  L    ++ ++  SG 
Sbjct: 143 AWKLATAGDQGLLLQSLNALSVLT---DGQPDLLDAQGLQLLVATLTQNADEADLTCSGI 199

Query: 241 AVVAASATGNEVVKESYMELKIDELILEILSRQ--RNDSIQSLYDAIRVLLTPDDDQVVA 298
             V  +   +E  ++  ++  +  L+   ++      D ++    A+RV+   DD +V  
Sbjct: 200 RCVRHACLKHEQNRQDLVKAGVLPLLTGAITHHGHHTDVVREACWALRVMTFDDDIRVP- 258

Query: 299 SQVYGYARRFAKIGIA-----RALVHSLHAGLSSPSLISASIA-LKAVAVNDEICKSVAE 352
              +G+A   AK+ +      + L+ +  A L +P ++S     L  +A+ +E C+ V +
Sbjct: 259 ---FGHAHNHAKMIVQENKGLKVLIEATKAFLDNPGILSELCGTLSRLAIRNEFCQEVVD 315

Query: 353 NGGIDALLRCI---------DDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDK 403
            GG+  L+  +         D SG+Q    + +   S L  +AG+D  K AI+  GG + 
Sbjct: 316 LGGLSILVSLLADCNDHQMRDQSGVQ---ELVKQVLSTLRAIAGNDDVKDAIVRAGGTES 372

Query: 404 LIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQR 463
           ++    +      V ++  + +  L+LR P+N+   +E G    A+QAM   P    +Q+
Sbjct: 373 IVAAMTQHLTSPQVCEQSCAALCFLALRKPDNSRIIVEGGGAVAALQAMKAHPQKAGVQK 432

Query: 464 SSCFMIRNLVARN 476
            +C +IRNLVA  
Sbjct: 433 QACMLIRNLVAHG 445

Homo sapiens (taxid: 9606)

>sp|Q5RD03|ARMC6_PONAB Armadillo repeat-containing protein 6 OS=Pongo abelii GN=ARMC6 PE=2 SV=1

 Score =  123 bits (308), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 107/436 (24%), Positives = 209/436 (47%), Gaps = 40/436 (9%)

Query: 62  RTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESS----LKD 117
           + I+QE FD  V+EN+E+  M P EA+++A++    QGVDLS IVK  P  S+       
Sbjct: 29  KRIAQETFDAAVRENIEEFAMGPDEAVKEAVEQFESQGVDLSNIVKTAPKVSADGSQEPT 88

Query: 118 NPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVEL 177
           + ++Q+L  L++   +S+ +       E+     +  + C  ++      +A + G   +
Sbjct: 89  HDILQTLSDLQESVASSRPQ-------EVSAYLTRFCDQCKQDKAC--RFLAAQKGAYPI 139

Query: 178 VCSICYKMRCGSKRVLDSCLKTMALLVH---DVQSTETFRTGGGPKLLVNILIDGNEDPE 234
           + +       G + +L   L  +++L     D+  T+      G +LLV  L    ++ +
Sbjct: 140 IFTAWKLATAGDQGLLLQSLNALSVLTDGQPDLLDTQ------GLQLLVATLTRNADEAD 193

Query: 235 ILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN--DSIQSLYDAIRVLLTPD 292
           +  SG   V  +   +E  ++  ++  +  L+   ++   +  D ++    A+RV+   D
Sbjct: 194 LTCSGIRCVRHACLKHEQNRQDLVKAGVLPLLTGAITHHGHHADVVREACCALRVMTFDD 253

Query: 293 DDQVVASQVYGYARRFAKIGIA-----RALVHSLHAGLSSPSLISASIA-LKAVAVNDEI 346
           D +V     +G+A   AK+ +      + L+ +  A L +P ++S     L  +A+ +E 
Sbjct: 254 DIRVP----FGHAHNHAKMIVQENKGLKVLIEATKAFLDNPGILSELCGTLSRLAIRNEF 309

Query: 347 CKSVAENGGIDALLRCIDDS-----GLQGN-KTVARICCSLLSKLAGSDSNKSAIIENGG 400
           C+ V + GG+  L+  + D      G Q + + + +   S+L  +AG+D  K AI+  GG
Sbjct: 310 CQEVVDLGGLSILVSLLADCNDHQMGDQSSVQELVKQVLSILRAIAGNDDVKDAIVRAGG 369

Query: 401 MDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQ 460
            + ++    +      V ++  + +  L+LR P+N+   +E G    A+QAM   P    
Sbjct: 370 TESIVAAMTQHLTSPQVCEQSCAALCFLALRKPDNSRIIVEGGGAVAALQAMKAHPQKAG 429

Query: 461 LQRSSCFMIRNLVARN 476
           +Q+ +C +IRNLVA +
Sbjct: 430 VQKQACMLIRNLVAHS 445

Pongo abelii (taxid: 9601)

>sp|Q8BNU0|ARMC6_MOUSE Armadillo repeat-containing protein 6 OS=Mus musculus GN=Armc6 PE=2 SV=1

 Score =  117 bits (292), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 108/425 (25%), Positives = 200/425 (47%), Gaps = 26/425 (6%)

Query: 62  RTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGES--SLKDNP 119
           + I+QE FD  V+EN+E+  M   EA+++A++    QGVDLS IVK +P  S   L++ P
Sbjct: 4   KRITQETFDAAVRENIEEFEMGTEEAIREAVEQFESQGVDLSNIVKTIPKVSLDGLQE-P 62

Query: 120 LIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVC 179
               L+ L  L    ++  +   L E+     +  + C   + S    +A + G   ++ 
Sbjct: 63  THSVLQALNDL----QESLTGSRLQEVSAHLVRFCDQCKQQKAS--RYLAAQKGAYPILL 116

Query: 180 SICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSG 239
           +  +++   S + L         ++ D Q         G  LLV  L     + E+   G
Sbjct: 117 AA-WQLAATSNQGLLLQALNALAVLTDGQPD--LLDAQGLHLLVATLAQNAANTELTCCG 173

Query: 240 FAVVAASATGNEVVKESYMELKIDELILEILSR--QRNDSIQSLYDAIRVLLTPDDDQVV 297
              V      +E  ++  ++  +  L+   +++  Q  D ++    A+RV+   DD +V 
Sbjct: 174 IRCVRHVCLKHEQNRQDLVKAGVLPLLTAAITQHGQHADVVREACWALRVMTFDDDIRVP 233

Query: 298 ASQVYGYARRFAKIGIA-----RALVHSLHAGLSSPSLISASIA-LKAVAVNDEICKSVA 351
               +G+A   AK+ +      + L+ +  A   +P ++S   + L  +AV +E C+ V 
Sbjct: 234 ----FGHAHEHAKMIVQENKGLKVLIEAARAFSDNPGVLSELCSTLSRLAVRNEFCQEVI 289

Query: 352 ENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARF 411
           + GG+  L+  + D     ++ + +   S L  +AG+D  K AI+  GG + ++    R 
Sbjct: 290 DLGGLGILVTLLADCN--DHQDLVKQVLSALRAIAGNDDVKDAIVRAGGTESIVAAMTRH 347

Query: 412 SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRN 471
                V ++  + + VL+LR P+N+   +E G    A+QAM   P    +Q+ +C +IRN
Sbjct: 348 LASPQVCEQSCAALCVLALRKPDNSRVIIEGGGALAALQAMKAHPQEAGVQKQACMLIRN 407

Query: 472 LVARN 476
           LV+R+
Sbjct: 408 LVSRS 412

Mus musculus (taxid: 10090)

>sp|Q7K486|ARMC6_DROME Armadillo repeat-containing protein 6 homolog OS=Drosophila melanogaster GN=CG5721 PE=1 SV=1

 Score = 99.8 bits (247), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 99/435 (22%), Positives = 205/435 (47%), Gaps = 20/435 (4%)

Query: 62  RTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLI 121
           + ISQ+ FD+VVKEN+ +  M P+EA ++ I+    QG++L+ I+K +          + 
Sbjct: 3   KVISQDTFDDVVKENVVEFSMTPSEAKEETIKQFEAQGINLANIIKDLSVNPQTGQPVIN 62

Query: 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSV-NAAVATKNGGVELVCS 180
           ++++++K+           + L E   L ++L  L    + S+ +  +A KNG  + + +
Sbjct: 63  ETVDKIKE--------HIGQKLEETTELLEQLATLDAECKKSLAHRVLAGKNGAHDALIT 114

Query: 181 ICYKMRCG---SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILN 237
           +  +       ++ VL   L+ +  L H  +  + F       +++ +L    E  E+  
Sbjct: 115 LLEETLSAESPNESVLKKSLEAINSLTH--KQPDLF-DAEAMAVVLKLLALKVESEEVTL 171

Query: 238 SGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVV 297
                +  +   +E+ +++ M     +L+  +L + ++  ++ L    R L+  DD +V 
Sbjct: 172 LTLQWLQKACIMHEMNRQNIMNTSALKLMKPLLGKGKDRLVRELTAVFRFLVLDDDIRVE 231

Query: 298 ASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGID 357
               + +AR+ A   +   LV  L A      L    + +  +AV  E+C ++ E GG+ 
Sbjct: 232 FGCAHEHARQIAG-EVLITLVELLPAYQDPNVLADLLLTIGTLAVRQELCTAIDEAGGLK 290

Query: 358 ALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASV 417
           ++   I  S L   + + R    LL  LAG DS KS I++ G    +  +      + ++
Sbjct: 291 SVFE-IMSSNLDEVR-LNREALKLLRALAGQDSVKSHIVQQGVAPIIKQLLETHQSNENI 348

Query: 418 LQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNP 477
           +   ++ +T L+LR  E++A   + G  ++ ++A+   P  + +QR+  + IRN+V+R+ 
Sbjct: 349 VAAALACVTTLTLRVQEHSAAFFDTGIAEVIVEALRAHPKHKIVQRNGAWAIRNMVSRSR 408

Query: 478 ENSFCSVMVSRNLSD 492
               C   +S  + D
Sbjct: 409 NQ--CETWISFGVED 421

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	508
224123442	461	predicted protein [Populus trichocarpa]	0.854	0.941	0.711	1e-175
224105507	453	predicted protein [Populus trichocarpa]	0.824	0.924	0.720	1e-171
255561675	719	Armadillo repeat-containing protein, put	0.854	0.603	0.698	1e-169
225428709	460	PREDICTED: armadillo repeat-containing p	0.820	0.906	0.710	1e-167
449517545	465	PREDICTED: armadillo repeat-containing p	0.836	0.913	0.703	1e-165
449438432	465	PREDICTED: armadillo repeat-containing p	0.836	0.913	0.703	1e-165
147858319	449	hypothetical protein VITISV_035941 [Viti	0.822	0.930	0.671	1e-162
217074674	459	unknown [Medicago truncatula] gi|3885189	0.850	0.941	0.640	1e-161
356521205	463	PREDICTED: armadillo repeat-containing p	0.814	0.894	0.646	1e-151
18418335	464	armadillo/beta-catenin-like repeat-conta	0.822	0.900	0.630	1e-141

>gi|224123442|ref|XP_002330316.1| predicted protein [Populus trichocarpa] gi|222871351|gb|EEF08482.1| predicted protein [Populus trichocarpa]

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 315/443 (71%), Positives = 372/443 (83%), Gaps = 9/443 (2%)

Query: 55  MGPP-KTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGES 113
           MGPP K VRTISQEAFDE+VKEN+EDLG++PTEAL+DAIQTL+LQGVDLSGIV CVPGE 
Sbjct: 1   MGPPSKNVRTISQEAFDELVKENIEDLGLDPTEALEDAIQTLTLQGVDLSGIVTCVPGEG 60

Query: 114 SLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNG 173
           ++++NP+I+ LERLK+L       F D+DL+EM+GL D+L+ L  G EGS N A+  +NG
Sbjct: 61  NVRENPVIKCLERLKEL------GFDDDDLDEMVGLLDELVGLFTGVEGSGNVAIGVRNG 114

Query: 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDP 233
           G+ELVCSIC  +   S++VL S LKT+ALL+HDVQSTE FR+  GPK++V IL  G+E  
Sbjct: 115 GLELVCSICSNIPIVSEKVLVSALKTLALLIHDVQSTEMFRSSDGPKMVVGILKGGSESL 174

Query: 234 EILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDD 293
           E+LN+GFAVVAA+ATGNEVVKE  +ELKIDELILE+L+RQ    IQ LYD+IRVLLTPDD
Sbjct: 175 EVLNTGFAVVAAAATGNEVVKELLIELKIDELILEVLNRQSKGIIQGLYDSIRVLLTPDD 234

Query: 294 DQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAEN 353
           ++VVASQVYGYARRFAKIGIARALV SL +GL+SPSL+SASIALKAVAVNDEICKS+AE+
Sbjct: 235 NRVVASQVYGYARRFAKIGIARALVESLRSGLTSPSLVSASIALKAVAVNDEICKSIAES 294

Query: 354 GGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSD 413
           GGID + +CIDDSG  GNK VAR CCSLLSKLAGSDSNKSAI+E  GM+KLI ++ARFSD
Sbjct: 295 GGIDVIFKCIDDSGEHGNKIVARACCSLLSKLAGSDSNKSAIVEKEGMNKLIQLAARFSD 354

Query: 414 DASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV 473
           D SVLQEVMSI TVL LRSP+NAARAMEAG+GDLAIQAM KF N QQLQRSSC MIRNLV
Sbjct: 355 DPSVLQEVMSIFTVLCLRSPDNAARAMEAGAGDLAIQAMEKFSNVQQLQRSSCLMIRNLV 414

Query: 474 ARNPENSFCSVMVSRNLSDRQRR 496
           ARNPEN   ++++S  +    RR
Sbjct: 415 ARNPENR--TLLLSHGIEKIIRR 435

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105507|ref|XP_002313836.1| predicted protein [Populus trichocarpa] gi|222850244|gb|EEE87791.1| predicted protein [Populus trichocarpa]

 Score =  608 bits (1568), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 307/426 (72%), Positives = 358/426 (84%), Gaps = 7/426 (1%)

Query: 55  MGPP-KTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGES 113
           MGPP K  RTISQEAFDE+VKEN+EDLGM+PTEAL+DAIQTL+LQGVDLSGIV CVPGE 
Sbjct: 1   MGPPSKNARTISQEAFDELVKENIEDLGMDPTEALEDAIQTLTLQGVDLSGIVTCVPGEG 60

Query: 114 SLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNG 173
           ++++NP+I+ LERL++L       F +   NEM GLFD+L  L  G EGS N A+  +NG
Sbjct: 61  NVRENPVIKCLERLEEL------GFDNNGSNEMAGLFDQLAGLFSGVEGSGNVAIGVRNG 114

Query: 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDP 233
           GVELVCSIC  +  GS++VL S L+T+ALL+HDVQSTETFR+  GPK++V+IL DG+E  
Sbjct: 115 GVELVCSICSNIPIGSEKVLVSALETLALLIHDVQSTETFRSSDGPKMVVDILKDGSESL 174

Query: 234 EILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDD 293
           +ILNSGFAVVAA+AT NEVVKE +MELKIDELILE L+RQ   +I+ LYD+IRVLLTPDD
Sbjct: 175 DILNSGFAVVAAAATSNEVVKELFMELKIDELILEALNRQSKGNIRGLYDSIRVLLTPDD 234

Query: 294 DQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAEN 353
           ++VVASQVYGYARRFAKIGIARALV SL AGL+SPSL+SASIALKAVAVNDEICKS+ E+
Sbjct: 235 NRVVASQVYGYARRFAKIGIARALVESLRAGLTSPSLVSASIALKAVAVNDEICKSITES 294

Query: 354 GGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSD 413
           GGIDA+L+ IDDSG QGNK VA+ CCSLLSKLAG DSNKSAI+E  GM+KLI +SARFSD
Sbjct: 295 GGIDAILKFIDDSGEQGNKIVAKTCCSLLSKLAGCDSNKSAIVEKKGMNKLIQLSARFSD 354

Query: 414 DASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV 473
           D  VLQEVMS+ TVL LRSP+NAARAMEAG+GDLAIQ M K    QQLQR+SC MIRNLV
Sbjct: 355 DPPVLQEVMSVFTVLCLRSPDNAARAMEAGAGDLAIQVMEKLSTVQQLQRNSCLMIRNLV 414

Query: 474 ARNPEN 479
            RNPEN
Sbjct: 415 VRNPEN 420

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561675|ref|XP_002521847.1| Armadillo repeat-containing protein, putative [Ricinus communis] gi|223538885|gb|EEF40483.1| Armadillo repeat-containing protein, putative [Ricinus communis]

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 306/438 (69%), Positives = 363/438 (82%), Gaps = 4/438 (0%)

Query: 44  FFVRTDLTAHEMGPP-KTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDL 102
            + R  L   EMGPP K  RTISQEAFDE+VKENME+LGM+PTEAL+DA+QTL+LQGVDL
Sbjct: 229 IYRRRRLAQREMGPPNKNARTISQEAFDELVKENMEELGMDPTEALEDAMQTLNLQGVDL 288

Query: 103 SGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDED-LNEMMGLFDKLIELCGGNE 161
           SGIV CVPGES+  DNP++Q L RLK++D  S D  S  D ++E+  LFDKLI L    E
Sbjct: 289 SGIVTCVPGESNASDNPVMQCLGRLKEIDSISIDPISSYDYISEIGELFDKLIGL--STE 346

Query: 162 GSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKL 221
            S N A+  KNGG++LVCSIC K+    K VL   LK +AL ++DVQSTETFR+ GG  +
Sbjct: 347 ASANVAIGVKNGGIQLVCSICSKIPNQFKAVLVVGLKALALFLYDVQSTETFRSSGGATI 406

Query: 222 LVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSL 281
           L  IL +GNE+ +IL+SGF+VVAA+ATGNE++KES+MELK+DELIL+ L+ Q   SIQ+L
Sbjct: 407 LAGILKNGNENIDILDSGFSVVAAAATGNEILKESFMELKVDELILQALNGQHKGSIQNL 466

Query: 282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA 341
           YDAIRVLLTPDDD++VASQVYGYARRFAKIGIA ALV SLH GL+SPSL+SA IALKAVA
Sbjct: 467 YDAIRVLLTPDDDRIVASQVYGYARRFAKIGIAGALVESLHGGLTSPSLVSACIALKAVA 526

Query: 342 VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGM 401
           VNDEICKS+AE GGIDA+L+CIDDSG QGNKTVAR CCSLLSKLAGSDS KS I+E GGM
Sbjct: 527 VNDEICKSIAERGGIDAILQCIDDSGEQGNKTVARTCCSLLSKLAGSDSIKSVIVEKGGM 586

Query: 402 DKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQL 461
           D+LI ++ARFSDD SVLQEVM++ITVL LRSP+NA+ A+EAG+GDLA+QAM KFP+A QL
Sbjct: 587 DRLIRLAARFSDDPSVLQEVMAVITVLCLRSPDNASCAIEAGAGDLAVQAMQKFPSAPQL 646

Query: 462 QRSSCFMIRNLVARNPEN 479
           QR+SCFMIRNLV RNPEN
Sbjct: 647 QRNSCFMIRNLVVRNPEN 664

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428709|ref|XP_002281840.1| PREDICTED: armadillo repeat-containing protein 6 [Vitis vinifera] gi|297741329|emb|CBI32460.3| unnamed protein product [Vitis vinifera]

 Score =  594 bits (1531), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 304/428 (71%), Positives = 356/428 (83%), Gaps = 11/428 (2%)

Query: 55  MGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESS 114
           MG  K VRTISQ AFDE+V+ENMEDLGMEP EAL+DA+QTL+LQGVDLSGIV CVPG+ S
Sbjct: 1   MGQKKGVRTISQAAFDELVRENMEDLGMEPAEALEDALQTLTLQGVDLSGIVACVPGDGS 60

Query: 115 LKDNPLIQSLERLKQLDLNSKDKFSDE-DLNEMMGLFDKLIELCGGNEGSVNAAVATKNG 173
           + DNP+IQSL+RLKQLD       SD     EM+ +FDKL ELC   EGS NAA+AT+NG
Sbjct: 61  VGDNPVIQSLDRLKQLD-------SDWVGFGEMVEVFDKLTELCS-IEGSDNAAIATRNG 112

Query: 174 GVELVCSICYKMR--CGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNE 231
           GVE+VCS+C K+R  C    VL S L TMA L+HDVQSTETF+  GGPK++V +L D ++
Sbjct: 113 GVEVVCSVCSKIRVGCEGDSVLVSGLTTMASLLHDVQSTETFQKIGGPKIVVGVLNDASQ 172

Query: 232 DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTP 291
           + +ILNSGF+VVAA+ATGNE++KES+M+L+IDELI++I+       + S+YDAI VLLTP
Sbjct: 173 NVDILNSGFSVVAAAATGNEILKESFMDLQIDELIIQIMKSHGRGRVHSIYDAICVLLTP 232

Query: 292 DDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVA 351
           DD++VVASQVYGYARRFAK GIA ALV SL  GL SPSL+SASIALKAVAVNDEICKS+A
Sbjct: 233 DDNRVVASQVYGYARRFAKAGIAGALVESLGEGLRSPSLVSASIALKAVAVNDEICKSIA 292

Query: 352 ENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARF 411
           E+GGIDA+LRCIDDSG QGNKTVAR CCSLLSKLAGSD+NKS I+E GGMD+LI +SARF
Sbjct: 293 ESGGIDAVLRCIDDSGEQGNKTVARACCSLLSKLAGSDANKSTIVEKGGMDRLIKLSARF 352

Query: 412 SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRN 471
           SDD SVLQEVM I  VLSLRSP+NAARA+EAG+GDLAIQAM KFP AQQ+QR+SC MIRN
Sbjct: 353 SDDPSVLQEVMPIFCVLSLRSPDNAARAVEAGAGDLAIQAMQKFPAAQQMQRNSCLMIRN 412

Query: 472 LVARNPEN 479
           LV RN EN
Sbjct: 413 LVVRNQEN 420

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517545|ref|XP_004165806.1| PREDICTED: armadillo repeat-containing protein 6-like [Cucumis sativus]

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 299/425 (70%), Positives = 364/425 (85%)

Query: 55  MGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESS 114
           MGPPKT+RTISQEAFDEVV+EN+EDLGM+PTEALQDAI+TL+LQGVDLSGIV+CVPGE S
Sbjct: 1   MGPPKTLRTISQEAFDEVVRENVEDLGMDPTEALQDAIETLTLQGVDLSGIVRCVPGEGS 60

Query: 115 LKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGG 174
            +DNPLIQSLERLKQLD +SKDK SD+ ++E++ LFD++ +LCG  + S NA++A +NGG
Sbjct: 61  ARDNPLIQSLERLKQLDGDSKDKISDQFVDEIVVLFDRISDLCGSTQESGNASIALRNGG 120

Query: 175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPE 234
           +EL+CS+CYK+    +  + S LKTM LL+ D+ STE FR   GP+++++IL  G ++  
Sbjct: 121 LELLCSLCYKIPSDCEPAVVSSLKTMVLLLQDLHSTEIFRNSNGPRIVMDILNSGKQNVN 180

Query: 235 ILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDD 294
           IL  GFAVVAA+AT NEVVKE +ME+ IDELIL+ LS  R D I SLYDAIRVLLT DD 
Sbjct: 181 ILYGGFAVVAAAATANEVVKEVFMEMNIDELILQTLSTYRGDCINSLYDAIRVLLTADDH 240

Query: 295 QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENG 354
           +VVASQVYGYARRFAKIGIA ALV SLH GL+S  L+SA IAL+AV+VNDEICKS+AENG
Sbjct: 241 RVVASQVYGYARRFAKIGIANALVDSLHEGLNSAGLVSACIALRAVSVNDEICKSIAENG 300

Query: 355 GIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDD 414
           GIDA+LRCIDDSG QGNK VA++CCSLLSKLAGSD+NKSAIIE  G++KLI +S+RFSDD
Sbjct: 301 GIDAVLRCIDDSGDQGNKMVAKVCCSLLSKLAGSDANKSAIIEKKGLNKLIKLSSRFSDD 360

Query: 415 ASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA 474
            SVLQEVM++++VL+LRSPENA +A+EAG+GDLAIQAM KFP+AQQ+QR+SC MIRNLV 
Sbjct: 361 PSVLQEVMAVVSVLTLRSPENATQAIEAGAGDLAIQAMQKFPSAQQMQRNSCNMIRNLVV 420

Query: 475 RNPEN 479
           RNPEN
Sbjct: 421 RNPEN 425

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438432|ref|XP_004136992.1| PREDICTED: armadillo repeat-containing protein 6-like [Cucumis sativus]

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 299/425 (70%), Positives = 364/425 (85%)

Query: 55  MGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESS 114
           MGPPKT+RTISQEAFDEVV+EN+EDLGM+PTEALQDAI+TL+LQGVDLSGIV+CVPGE S
Sbjct: 1   MGPPKTLRTISQEAFDEVVRENVEDLGMDPTEALQDAIETLTLQGVDLSGIVRCVPGEGS 60

Query: 115 LKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGG 174
            +DNPLIQSLERLKQLD +SKDK SD+ ++E++ LFD++ +LCG  + S NA++A +NGG
Sbjct: 61  ARDNPLIQSLERLKQLDGDSKDKISDQFVDEIVVLFDRISDLCGSTQESGNASIALRNGG 120

Query: 175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPE 234
           +EL+CS+CYK+    +  + S LKTM LL+ D+ STE FR   GP+++++IL  G ++  
Sbjct: 121 LELLCSLCYKIPSDCEPAVVSSLKTMVLLLQDLHSTEIFRNSNGPRIVMDILNSGKQNVN 180

Query: 235 ILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDD 294
           IL  GFAVVAA+AT NEVVKE +ME+ IDELIL+ LS  R D I SLYDAIRVLLT DD 
Sbjct: 181 ILYGGFAVVAAAATANEVVKEVFMEMNIDELILQTLSTYRGDCINSLYDAIRVLLTADDH 240

Query: 295 QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENG 354
           +VVASQVYGYARRFAKIGIA ALV SLH GL+S  L+SA IAL+AV+VNDEICKS+AENG
Sbjct: 241 RVVASQVYGYARRFAKIGIANALVDSLHEGLNSSGLVSACIALRAVSVNDEICKSIAENG 300

Query: 355 GIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDD 414
           GIDA+LRCIDDSG QGNK VA++CCSLLSKLAGSD+NKSAIIE  G++KLI +S+RFSDD
Sbjct: 301 GIDAVLRCIDDSGDQGNKMVAKVCCSLLSKLAGSDANKSAIIEKKGLNKLIKLSSRFSDD 360

Query: 415 ASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA 474
            SVLQEVM++++VL+LRSPENA +A+EAG+GDLAIQAM KFP+AQQ+QR+SC MIRNLV 
Sbjct: 361 PSVLQEVMAVVSVLTLRSPENATQAIEAGAGDLAIQAMQKFPSAQQMQRNSCNMIRNLVV 420

Query: 475 RNPEN 479
           RNPEN
Sbjct: 421 RNPEN 425

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147858319|emb|CAN81421.1| hypothetical protein VITISV_035941 [Vitis vinifera]

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 301/448 (67%), Positives = 356/448 (79%), Gaps = 30/448 (6%)

Query: 55  MGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESS 114
           MG  K VRTISQ AFDE+V+ENMEDLGM+P EAL+DA+QTL+LQGVDLSGIV CVPG+ S
Sbjct: 1   MGQKKGVRTISQAAFDELVRENMEDLGMDPAEALEDALQTLTLQGVDLSGIVACVPGDGS 60

Query: 115 LKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGG 174
           + DNP+IQSL+RL QLD + +  F      EM+ +FDKL ELC   EGS NAA+AT+NGG
Sbjct: 61  VGDNPVIQSLDRLNQLD-SDRGGF-----GEMVEVFDKLTELCS-IEGSGNAAIATRNGG 113

Query: 175 VELVCSICYKMR--CGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNED 232
           VE+VCS+C K+R  C    VL S L TMA L+HDVQSTETF+  GGPK++V +L D +++
Sbjct: 114 VEVVCSVCSKIRVGCEGDSVLVSGLTTMASLLHDVQSTETFQKIGGPKIVVGVLNDASQN 173

Query: 233 PEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPD 292
            +ILNSGF+VVAA+ATGNE++KES+M+L+IDELI++I+       + S+YDAI VLLTPD
Sbjct: 174 VDILNSGFSVVAAAATGNEILKESFMDLQIDELIIQIMKSHGRGRVHSIYDAICVLLTPD 233

Query: 293 DDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAE 352
           D++VVASQVYGYARRFAK GIA ALV SL  GL SPSL+SASIALKAVAVNDEICKS+AE
Sbjct: 234 DNRVVASQVYGYARRFAKAGIAGALVESLGEGLRSPSLVSASIALKAVAVNDEICKSIAE 293

Query: 353 NGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFS 412
           +GGIDA+LRCIDDSG QGNKTVAR CCSLLSKLAGSD+NKS I+E GGMD+LI +SARFS
Sbjct: 294 SGGIDAVLRCIDDSGEQGNKTVARACCSLLSKLAGSDANKSTIVEKGGMDRLIKLSARFS 353

Query: 413 DDASVLQE---------------------VMSIITVLSLRSPENAARAMEAGSGDLAIQA 451
           DD SVLQE                     VM I  VLSLRSP+NAARA+EAG+GDLAIQA
Sbjct: 354 DDPSVLQEVNHLKVFIQMNVLDHHTAILDVMPIFCVLSLRSPDNAARAVEAGAGDLAIQA 413

Query: 452 MLKFPNAQQLQRSSCFMIRNLVARNPEN 479
           M KFP AQQ+QR+SC MIRNLV RN EN
Sbjct: 414 MQKFPAAQQMQRNSCLMIRNLVVRNQEN 441

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074674|gb|ACJ85697.1| unknown [Medicago truncatula] gi|388518985|gb|AFK47554.1| unknown [Medicago truncatula]

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 289/451 (64%), Positives = 365/451 (80%), Gaps = 19/451 (4%)

Query: 55  MGPPKTV-RTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGES 113
           MG PKT  R +SQEAF+++V EN+ DL M+PTEALQDAIQTL+LQGVDLSGIV  +PGES
Sbjct: 1   MGVPKTTARAVSQEAFNDLVFENINDLEMDPTEALQDAIQTLTLQGVDLSGIVTSLPGES 60

Query: 114 SLKDNPLIQSLERLKQLDLNSKDKFSDED--LNEMMGLFDKLIELCGGNEGSVNAAVATK 171
               NP+I+ LE+LKQ        F +ED  L+E++ +FDKL+ELCGG +G+ NAA+ATK
Sbjct: 61  ----NPVIECLEKLKQ--------FENEDITLDEIVEVFDKLVELCGGEDGNGNAAIATK 108

Query: 172 NGGVELVCSICYKMRC--GSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDG 229
           NGGVELVC +  K+R   GS+ VL S L  +ALL+HDVQST TF+   GP++++ I+ D 
Sbjct: 109 NGGVELVCGVFEKIRSSDGSRVVLVSGLNALALLLHDVQSTGTFQNSNGPRIIIGIINDN 168

Query: 230 NEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLL 289
            ++ ++LNS F VVA++ATG+E+VK+S+MELK+DELI+EI+S  +N  IQSLYDAIRVLL
Sbjct: 169 KQNIDVLNSSFRVVASAATGDEIVKDSFMELKVDELIVEIMSVHKNPGIQSLYDAIRVLL 228

Query: 290 TPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKS 349
           TPDD++V+ASQVYGYAR+FAKIGI  ALV SLH GLSSP L+SA I LKA AVNDEICKS
Sbjct: 229 TPDDNRVLASQVYGYARKFAKIGITDALVDSLHTGLSSPDLVSACITLKATAVNDEICKS 288

Query: 350 VAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSA 409
           +AE GGID +L+CIDDSG QGN  VA++CCSLLSKLAGSD+NKSAI+  GGMDKLI +SA
Sbjct: 289 IAEKGGIDVVLKCIDDSGEQGNTDVAKVCCSLLSKLAGSDANKSAIVGKGGMDKLIKLSA 348

Query: 410 RFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMI 469
           R++DD +VLQE+MSII+VLSLRSPENAARA+EAG+GDLAIQAM KFP A Q+QR+SC MI
Sbjct: 349 RYADDPTVLQEIMSIISVLSLRSPENAARAIEAGAGDLAIQAMQKFPAAHQMQRNSCLMI 408

Query: 470 RNLVARNPENSFCSVMVSRNLSDRQRRTTKS 500
           RNLVARNPEN   +++++  +    R+  ++
Sbjct: 409 RNLVARNPENR--TILLNNGIEKHIRKAKQT 437

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521205|ref|XP_003529247.1| PREDICTED: armadillo repeat-containing protein 6 [Glycine max]

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 280/433 (64%), Positives = 344/433 (79%), Gaps = 19/433 (4%)

Query: 55  MGPP---KTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPG 111
           MGP     T+R+ISQEAF+E+V EN++DLGM+PTEALQDAIQTL+LQGVDLSGIV CVPG
Sbjct: 1   MGPAAKTTTMRSISQEAFEELVNENIDDLGMDPTEALQDAIQTLTLQGVDLSGIVTCVPG 60

Query: 112 ESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGG--NEGSVNAAVA 169
           E+    NP+I+ L+RL+ L+       ++ D N +   F+ L ELC    ++ + N A+A
Sbjct: 61  ET----NPVIECLDRLRHLE-------TEPDQNLIAQAFNTLHELCANPNSDSNSNVAIA 109

Query: 170 TKNGGVELVCSICYK--MRCGSKRV-LDSCLKTMALLVHDVQSTETFRTGGGPKLLVNIL 226
           TKNG VEL CS+C K  +  GS  V L S L  ++ L+HDVQST  F    GP++++  L
Sbjct: 110 TKNGAVELACSLCSKISLAAGSHVVPLVSALNALSSLLHDVQSTGAFHRCDGPRIVMAFL 169

Query: 227 IDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIR 286
           +D   + E+L+SGF VVA++ATG+E+VKE++MELK+DELILEI+S  R+  IQSLYDA+ 
Sbjct: 170 VDNKGNVELLSSGFRVVASAATGDEIVKEAFMELKVDELILEIMSLHRHKGIQSLYDAVC 229

Query: 287 VLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEI 346
            LL PDDD+VVASQVYGYAR+FAKIGIA ALV SL AG+SS  LISA I L+AVAVNDEI
Sbjct: 230 ALLMPDDDRVVASQVYGYARKFAKIGIAEALVDSLSAGVSSHDLISACITLRAVAVNDEI 289

Query: 347 CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIV 406
           CKS+AE GGIDALLRCIDDSG QG+K VA++CCSLLSKLAGSD+NKSAI+  GGMDKLI 
Sbjct: 290 CKSIAEKGGIDALLRCIDDSGEQGDKAVAKVCCSLLSKLAGSDANKSAIVGKGGMDKLIK 349

Query: 407 VSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSC 466
           +SARF+DD SVLQE+MSII+VLSLRSP+NAARA+EAG+GDLAIQAM KFP A Q+QR+SC
Sbjct: 350 LSARFADDPSVLQEIMSIISVLSLRSPDNAARAIEAGAGDLAIQAMEKFPAAHQMQRNSC 409

Query: 467 FMIRNLVARNPEN 479
            MIRNLV RNPEN
Sbjct: 410 LMIRNLVVRNPEN 422

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18418335|ref|NP_567944.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|20466738|gb|AAM20686.1| putative protein [Arabidopsis thaliana] gi|111074180|gb|ABH04463.1| At4g33945 [Arabidopsis thaliana] gi|332660898|gb|AEE86298.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana]

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 266/422 (63%), Positives = 340/422 (80%), Gaps = 4/422 (0%)

Query: 61  VRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPL 120
           VRTISQEAFD++V+EN+EDLGM+P+EAL+DA+ TL LQGVDL GI+ CVPGESS+KDNP+
Sbjct: 3   VRTISQEAFDDLVRENVEDLGMDPSEALEDALYTLKLQGVDLFGIITCVPGESSVKDNPV 62

Query: 121 IQSLERLKQLDLNSKD-KFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVC 179
           I  L+RLK+ D  S D    DE  +E+  LF  L ELC   E S NAA+ATK+G V+L C
Sbjct: 63  IACLDRLKEFDSVSIDGPLRDEVFDEISSLFKNLNELCSSQE-SGNAAIATKHGAVDLTC 121

Query: 180 SICYKMRCGSK--RVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILN 237
           SIC K++  ++  RVL  C K +A+L+ D+QSTE FR   GP ++V++L D + D ++L+
Sbjct: 122 SICSKIKISTRSNRVLVPCFKALAVLIRDIQSTERFRNCTGPNIVVDLLNDSSSDSDLLD 181

Query: 238 SGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVV 297
           +GFAVVAA+ATGNEVVK+ +MELKIDELIL++L+R+   +I++LYDAI  LLTPDD +VV
Sbjct: 182 AGFAVVAAAATGNEVVKQLFMELKIDELILQVLNRESKTTIRALYDAICALLTPDDFRVV 241

Query: 298 ASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGID 357
           ASQVYGYAR FAK+GIA AL  +L AG+ S SL+SAS ALKA+AVNDEICKS+AE+GGID
Sbjct: 242 ASQVYGYARTFAKLGIATALTEALQAGIGSDSLVSASTALKAIAVNDEICKSIAESGGID 301

Query: 358 ALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASV 417
            LLRCIDDSG QGNKT A+ CCSLLSKLAGSDSNKS I+E  G+DKLI ++ RFSDD  V
Sbjct: 302 TLLRCIDDSGEQGNKTAAKTCCSLLSKLAGSDSNKSTIVEKQGLDKLITLALRFSDDPLV 361

Query: 418 LQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNP 477
           +QEVM II+++ LRSP++AA+A+EAG+GDLA+QAM +FP A Q+QR++C MIRN+  R+ 
Sbjct: 362 IQEVMLIISIICLRSPDHAAKAIEAGAGDLAVQAMKRFPVAAQMQRNACNMIRNIAVRSA 421

Query: 478 EN 479
           EN
Sbjct: 422 EN 423

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	508
TAIR|locus:505006553	464	AT4G33945 [Arabidopsis thalian	0.858	0.939	0.557	6.3e-124
MGI|MGI:1924063	468	Armc6 "armadillo repeat contai	0.793	0.861	0.239	2e-25
FB|FBgn0034315	464	CG5721 [Drosophila melanogaste	0.816	0.894	0.225	5.9e-21

TAIR|locus:505006553 AT4G33945 [Arabidopsis thaliana (taxid:3702)]

 Score = 1218 (433.8 bits), Expect = 6.3e-124, P = 6.3e-124
 Identities = 247/443 (55%), Positives = 323/443 (72%)

Query:    61 VRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPL 120
             VRTISQEAFD++V+EN+EDLGM+P+EAL+DA+ TL LQGVDL GI+ CVPGESS+KDNP+
Sbjct:     3 VRTISQEAFDDLVRENVEDLGMDPSEALEDALYTLKLQGVDLFGIITCVPGESSVKDNPV 62

Query:   121 IQSLERLKQLDLNSKD-KFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVC 179
             I  L+RLK+ D  S D    DE  +E+  LF  L ELC   E S NAA+ATK+G V+L C
Sbjct:    63 IACLDRLKEFDSVSIDGPLRDEVFDEISSLFKNLNELCSSQE-SGNAAIATKHGAVDLTC 121

Query:   180 SICYKMRCG--SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILN 237
             SIC K++    S RVL  C K +A+L+ D+QSTE FR   GP ++V++L D + D ++L+
Sbjct:   122 SICSKIKISTRSNRVLVPCFKALAVLIRDIQSTERFRNCTGPNIVVDLLNDSSSDSDLLD 181

Query:   238 SGFAVVAASATGNEVVKESYMXXXXXXXXXXXXSRQRNDSIQSLYDAIRVLLTPDDDQVV 297
             +GFAVVAA+ATGNEVVK+ +M            +R+   +I++LYDAI  LLTPDD +VV
Sbjct:   182 AGFAVVAAAATGNEVVKQLFMELKIDELILQVLNRESKTTIRALYDAICALLTPDDFRVV 241

Query:   298 ASQVYGYARRFAKIGIARALVHSLHXXXXXXXXXXXXXXXXXXXVNDEICKSVAENGGID 357
             ASQVYGYAR FAK+GIA AL  +L                    VNDEICKS+AE+GGID
Sbjct:   242 ASQVYGYARTFAKLGIATALTEALQAGIGSDSLVSASTALKAIAVNDEICKSIAESGGID 301

Query:   358 ALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASV 417
              LLRCIDDSG QGNKT A+ CCSLLSKLAGSDSNKS I+E  G+DKLI ++ RFSDD  V
Sbjct:   302 TLLRCIDDSGEQGNKTAAKTCCSLLSKLAGSDSNKSTIVEKQGLDKLITLALRFSDDPLV 361

Query:   418 LQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNP 477
             +QEVM II+++ LRSP++AA+A+EAG+GDLA+QAM +FP A Q+QR++C MIRN+  R+ 
Sbjct:   362 IQEVMLIISIICLRSPDHAAKAIEAGAGDLAVQAMKRFPVAAQMQRNACNMIRNIAVRSA 421

Query:   478 ENSFCSVMVSRNLSDRQRRTTKS 500
             EN   +++++  + ++  RT K+
Sbjct:   422 ENR--TILLANGI-EKLIRTAKA 441

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1924063 Armc6 "armadillo repeat containing 6" [Mus musculus (taxid:10090)]

 Score = 307 (113.1 bits), Expect = 2.0e-25, P = 2.0e-25
 Identities = 101/421 (23%), Positives = 183/421 (43%)

Query:    62 RTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGES--SLKDNP 119
             + I+QE FD  V+EN+E+  M   EA+++A++    QGVDLS IVK +P  S   L++ P
Sbjct:     4 KRITQETFDAAVRENIEEFEMGTEEAIREAVEQFESQGVDLSNIVKTIPKVSLDGLQE-P 62

Query:   120 LIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVC 179
                 L+ L  L    ++  +   L E+     +  + C   + S    +A + G   ++ 
Sbjct:    63 THSVLQALNDL----QESLTGSRLQEVSAHLVRFCDQCKQQKAS--RYLAAQKGAYPILL 116

Query:   180 SICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSG 239
             +        ++ +L   L  +A+L  D Q         G  LLV  L     + E+   G
Sbjct:   117 AAWQLAATSNQGLLLQALNALAVLT-DGQPD--LLDAQGLHLLVATLAQNAANTELTCCG 173

Query:   240 FAVVAASATGNEVVKESYMXXXXXXXXXXXXSR--QRNDSIQSLYDAIRVLLTPDDDQVV 297
                V      +E  ++  +            ++  Q  D ++    A+RV+   DD +V 
Sbjct:   174 IRCVRHVCLKHEQNRQDLVKAGVLPLLTAAITQHGQHADVVREACWALRVMTFDDDIRVP 233

Query:   298 ASQVYGYARRFAKIGIA-RALVHSLHXXXXXXXXXXXX-XXXXXXXVNDEICKSVAENGG 355
                 + +A+   +     + L+ +                      V +E C+ V + GG
Sbjct:   234 FGHAHEHAKMIVQENKGLKVLIEAARAFSDNPGVLSELCSTLSRLAVRNEFCQEVIDLGG 293

Query:   356 IDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDA 415
             +  L+  + D     ++ + +   S L  +AG+D  K AI+  GG + ++    R     
Sbjct:   294 LGILVTLLADCN--DHQDLVKQVLSALRAIAGNDDVKDAIVRAGGTESIVAAMTRHLASP 351

Query:   416 SVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR 475
              V ++  + + VL+LR P+N+   +E G    A+QAM   P    +Q+ +C +IRNLV+R
Sbjct:   352 QVCEQSCAALCVLALRKPDNSRVIIEGGGALAALQAMKAHPQEAGVQKQACMLIRNLVSR 411

Query:   476 N 476
             +
Sbjct:   412 S 412

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0034315 CG5721 [Drosophila melanogaster (taxid:7227)]

 Score = 270 (100.1 bits), Expect = 5.9e-21, P = 5.9e-21
 Identities = 98/435 (22%), Positives = 199/435 (45%)

Query:    62 RTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLI 121
             + ISQ+ FD+VVKEN+ +  M P+EA ++ I+    QG++L+ I+K +   +     P+I
Sbjct:     3 KVISQDTFDDVVKENVVEFSMTPSEAKEETIKQFEAQGINLANIIKDL-SVNPQTGQPVI 61

Query:   122 -QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCS 180
              ++++++K+  +  K + + E L E +   D   E C   +   +  +A KNG  + + +
Sbjct:    62 NETVDKIKE-HIGQKLEETTE-LLEQLATLDA--E-C--KKSLAHRVLAGKNGAHDALIT 114

Query:   181 ICYKMRCG---SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILN 237
             +  +       ++ VL   L+ +  L H  +  + F       +++ +L    E  E+  
Sbjct:   115 LLEETLSAESPNESVLKKSLEAINSLTH--KQPDLF-DAEAMAVVLKLLALKVESEEVTL 171

Query:   238 SGFAVVAASATGNEVVKESYMXXXXXXXXXXXXSRQRNDSIQSLYDAIRVLLTPDDDQVV 297
                  +  +   +E+ +++ M             + ++  ++ L    R L+  DD +V 
Sbjct:   172 LTLQWLQKACIMHEMNRQNIMNTSALKLMKPLLGKGKDRLVRELTAVFRFLVLDDDIRVE 231

Query:   298 ASQVYGYARRFAKIGIARALVHSLHXXXXXXXXXXXXXXXXXXXVNDEICKSVAENGGID 357
                 + +AR+ A   +   LV  L                    V  E+C ++ E GG+ 
Sbjct:   232 FGCAHEHARQIAG-EVLITLVELLPAYQDPNVLADLLLTIGTLAVRQELCTAIDEAGGLK 290

Query:   358 ALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASV 417
             ++   I  S L   + + R    LL  LAG DS KS I++ G    +  +      + ++
Sbjct:   291 SVFE-IMSSNLDEVR-LNREALKLLRALAGQDSVKSHIVQQGVAPIIKQLLETHQSNENI 348

Query:   418 LQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNP 477
             +   ++ +T L+LR  E++A   + G  ++ ++A+   P  + +QR+  + IRN+V+R+ 
Sbjct:   349 VAAALACVTTLTLRVQEHSAAFFDTGIAEVIVEALRAHPKHKIVQRNGAWAIRNMVSRS- 407

Query:   478 ENSFCSVMVSRNLSD 492
              N  C   +S  + D
Sbjct:   408 RNQ-CETWISFGVED 421


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.132   0.371    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      508       477   0.00079  119 3  11 22  0.40    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  590 (63 KB)
  Total size of DFA:  238 KB (2129 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  39.13u 0.09s 39.22t   Elapsed:  00:00:04
  Total cpu time:  39.13u 0.09s 39.22t   Elapsed:  00:00:04
  Start:  Fri May 10 13:27:07 2013   End:  Fri May 10 13:27:11 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_1300012 hypothetical protein (462 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	508
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	0.004

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 9/101 (8%)

Query: 308 FAKIGIARALVHSLHAGLSSPSLISASI-ALKAVAVN-DEICKSVAENGGIDALLRCIDD 365
             + G   ALV  L +  S  ++   +  AL  ++   ++  ++V E GG+ AL++ +  
Sbjct: 3   VIQAGGLPALVSLLSS--SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60

Query: 366 SGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLI 405
                ++ V +     L  LA G + NK  ++E GG+ KL+
Sbjct: 61  E----DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLV 97

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	508
KOG4199	461	consensus Uncharacterized conserved protein [Funct	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.98
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.95
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.95
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.94
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.87
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.83
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.73
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.72
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.61
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.6
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.53
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.44
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.41
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.36
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.33
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.23
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.23
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.15
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.14
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.13
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.04
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.97
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	98.9
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.86
PRK09687	280	putative lyase; Provisional	98.85
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.82
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.72
PRK09687	280	putative lyase; Provisional	98.66
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.65
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.61
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.54
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.48
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.41
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.4
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.37
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.35
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.33
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.32
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.31
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.25
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.24
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.23
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.21
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.18
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.18
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.07
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.04
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.95
KOG1293	678	consensus Proteins containing armadillo/beta-caten	97.89
PF05536	543	Neurochondrin: Neurochondrin	97.89
KOG3678	832	consensus SARM protein (with sterile alpha and arm	97.88
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.84
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.79
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.79
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.79
KOG2973	353	consensus Uncharacterized conserved protein [Funct	97.78
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	97.76
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.75
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.67
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	97.65
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.61
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.58
PF05536	543	Neurochondrin: Neurochondrin	97.53
PTZ00429	746	beta-adaptin; Provisional	97.49
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	97.44
PTZ00429	746	beta-adaptin; Provisional	97.41
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.38
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.34
TIGR02270	410	conserved hypothetical protein. Members are found	97.23
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.0
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.0
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.95
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	96.86
KOG4413	524	consensus 26S proteasome regulatory complex, subun	96.82
TIGR02270	410	conserved hypothetical protein. Members are found	96.76
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	96.71
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	96.67
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.56
PRK14707	2710	hypothetical protein; Provisional	96.51
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	96.5
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.33
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.31
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.12
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	96.05
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.88
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	95.87
PRK14707	2710	hypothetical protein; Provisional	95.66
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	95.65
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	95.6
COG5369	743	Uncharacterized conserved protein [Function unknow	95.54
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	95.53
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	95.51
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	95.49
KOG2973	353	consensus Uncharacterized conserved protein [Funct	95.39
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.35
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	95.32
PF07814	361	WAPL: Wings apart-like protein regulation of heter	95.31
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	95.28
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	95.27
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	95.17
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	94.94
COG5369	743	Uncharacterized conserved protein [Function unknow	94.9
COG1413	335	FOG: HEAT repeat [Energy production and conversion	94.88
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	94.88
COG1413	335	FOG: HEAT repeat [Energy production and conversion	94.72
KOG3036	293	consensus Protein involved in cell differentiation	94.7
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	94.57
KOG0212	675	consensus Uncharacterized conserved protein [Funct	94.46
KOG4413	524	consensus 26S proteasome regulatory complex, subun	94.18
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	94.11
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	94.07
KOG1242	569	consensus Protein containing adaptin N-terminal re	94.06
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	94.02
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	93.71
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	93.41
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	93.41
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	93.34
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	93.33
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	93.3
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	93.27
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	93.24
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	92.78
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	92.49
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	92.39
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	92.35
KOG2259	823	consensus Uncharacterized conserved protein [Funct	92.32
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	92.25
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	92.01
PF07814	361	WAPL: Wings apart-like protein regulation of heter	91.47
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	91.32
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	91.31
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	91.08
PF05004	309	IFRD: Interferon-related developmental regulator (	90.31
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	90.2
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	89.88
KOG3036	293	consensus Protein involved in cell differentiation	89.65
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	89.64
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	89.55
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	89.52
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	89.25
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	89.13
KOG1242	569	consensus Protein containing adaptin N-terminal re	88.85
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	88.48
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	88.39
KOG1824	1233	consensus TATA-binding protein-interacting protein	88.14
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	87.83
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	86.58
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	86.22
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	85.86
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	85.31
KOG0567	289	consensus HEAT repeat-containing protein [General	85.25
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	85.14
COG5096	757	Vesicle coat complex, various subunits [Intracellu	84.76
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	84.72
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	84.71
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	84.47
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	83.79
KOG0212	675	consensus Uncharacterized conserved protein [Funct	83.36
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	83.25
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	83.18
KOG2259	823	consensus Uncharacterized conserved protein [Funct	83.01
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	82.54
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	82.44
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	81.54
PF05004	309	IFRD: Interferon-related developmental regulator (	80.84

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=5.5e-71  Score=532.87  Aligned_cols=425  Identities=41%  Similarity=0.615  Sum_probs=395.5

Q ss_pred             hhhhhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHhhccccCCCccccCCCCCCCCCChHH-HHHHHHHHHhhcCCCCC
Q 010533           60 TVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLI-QSLERLKQLDLNSKDKF  138 (508)
Q Consensus        60 ~~~~isQetfd~~v~eni~~~~m~p~eal~~aI~q~~~qgvdLs~i~~~~~~~~~~~~~~v~-~~l~~L~~~l~~~~~~~  138 (508)
                      ++++|+|+|||.+|+|||++|.|.|+||.+++|+||+.||++|+||+|+.+.. -....|+. ..+.++++.+.+     
T Consensus         1 ~~K~i~q~tfd~~v~eni~ef~m~peea~~e~I~qfe~qgi~l~nIik~~sv~-~~~~qp~i~~~~~~i~e~i~~-----   74 (461)
T KOG4199|consen    1 MAKVISQDTFDDVVKENVVEFSMTPSEAKEETIKQFEAQGINLANIIKDLSVN-PQTGQPVINETVDKIKEHIGQ-----   74 (461)
T ss_pred             CchhHhHHHHHHHHHHHHHHHhcCccccchHHHHHHHhccCcccccccccCCC-CCCCCccHHHhHHHHHHHHHh-----
Confidence            46899999999999999999999999999999999999999999999998833 22333544 678888888775     


Q ss_pred             ChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCC
Q 010533          139 SDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGG  218 (508)
Q Consensus       139 ~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~gg  218 (508)
                         -+++..+.+..|...|++  +.++|....++|++|.++-++.....+++.++..+|.+|..+++++   ++++++.|
T Consensus        75 ---~~~E~s~ll~~l~d~ck~--~~A~r~la~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~q---pdl~da~g  146 (461)
T KOG4199|consen   75 ---KLEETTELLEQLADECKK--SLAHRVLAGKNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQ---PDLFDAEA  146 (461)
T ss_pred             ---hhHHHHHHHHHHHHHHhh--hHHHHHHhccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCC---cchhcccc
Confidence               478888888888889998  9999999999999999998887655578889999999999998875   79999999


Q ss_pred             hHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCcchhh
Q 010533          219 PKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVV  297 (508)
Q Consensus       219 i~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~~L~~~dd~r~~  297 (508)
                      +..++++|....++.++...++.|+...|.+||.||+.||+.|+++++...|..++. .+++++||+++.|.++||+||+
T Consensus       147 ~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~  226 (461)
T KOG4199|consen  147 MAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVV  226 (461)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeee
Confidence            999999999888999999999999999999999999999999999999999987655 6999999999999999999999


Q ss_pred             hhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHH
Q 010533          298 ASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARI  377 (508)
Q Consensus       298 ~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~  377 (508)
                      ||++|+|+|+|++.|++..|+++++.+-|++.+.++|.+|+.||+++|+|+.|++.||++.|+++|.+++++++..+.+.
T Consensus       227 fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~  306 (461)
T KOG4199|consen  227 FGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKT  306 (461)
T ss_pred             cchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHH
Confidence            99999999999988999999999999989999999999999999999999999999999999999999888877789999


Q ss_pred             HHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCC
Q 010533          378 CCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPN  457 (508)
Q Consensus       378 al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~  457 (508)
                      +|++|+.|||+|++|..||+.||.+.|+.++.+|+++|.|.+++|++++.||+|.|++.+.+++.|+....+++|+.||.
T Consensus       307 ~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~  386 (461)
T KOG4199|consen  307 CLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPV  386 (461)
T ss_pred             HHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHhhhcCccchHHHHhccccccHHHHhhh
Q 010533          458 AQQLQRSSCFMIRNLVARNPENSFCSVMVSRNLSDRQRRTT  498 (508)
Q Consensus       458 ~~~vq~~A~~aL~nL~~~~~e~~~~~~~~g~~~~~~~~~~~  498 (508)
                      .+.|||+|||+||||++|+.++++.++.-|..-.-++.++.
T Consensus       387 ~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~  427 (461)
T KOG4199|consen  387 AAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKAN  427 (461)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhc
Confidence            99999999999999999999999999999987776766654

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.8e-36  Score=312.10  Aligned_cols=335  Identities=14%  Similarity=0.170  Sum_probs=290.6

Q ss_pred             HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHh
Q 010533          124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL  203 (508)
Q Consensus       124 l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l  203 (508)
                      ...+...+-+.       +.+.+..+...+|++.+.+.+|+ .......|+||.+|.+|+..  .++.++..|.|+|+++
T Consensus        68 ~~~~~~~~~S~-------~~~~q~~a~~~~rkllS~~~~pp-i~~vi~~G~v~~lV~~l~~~--~~~~lq~eAAWaLTnI  137 (514)
T KOG0166|consen   68 LELMLAALYSD-------DPQQQLTATQAFRKLLSKERNPP-IDEVIQSGVVPRLVEFLSRD--DNPTLQFEAAWALTNI  137 (514)
T ss_pred             hHHHHHHHhCC-------CHHHHHHHHHHHHHHHccCCCCC-HHHHHHcCcHHHHHHHHccC--CChhHHHHHHHHHHHH
Confidence            44455555554       78889999999999988754544 44555569999999999865  4678999999999999


Q ss_pred             hcCC-cchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-HHHHHH
Q 010533          204 VHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSL  281 (508)
Q Consensus       204 ~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~~A  281 (508)
                      +.+. +.+..++++|++|.++.+|.  +.+..+++.|.|+|++++.+++..|+.++..|++++|+.++..... ..++++
T Consensus       138 Asgtse~T~~vv~agavp~fi~Ll~--s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~  215 (514)
T KOG0166|consen  138 ASGTSEQTKVVVDAGAVPIFIQLLS--SPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNA  215 (514)
T ss_pred             hcCchhhccccccCCchHHHHHHhc--CCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHH
Confidence            8776 44688899999999999997  4689999999999999999999999999999999999999998765 789999


Q ss_pred             HHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc-ChhhHhHHhhcCCHHHHH
Q 010533          282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALL  360 (508)
Q Consensus       282 ~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv  360 (508)
                      .|+|+|||.+.++..++.       .+.  .++|.|..+|.+ +|++++.++||||++|+. .+|..+.+++.|+++.|+
T Consensus       216 tW~LsNlcrgk~P~P~~~-------~v~--~iLp~L~~ll~~-~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV  285 (514)
T KOG0166|consen  216 TWTLSNLCRGKNPSPPFD-------VVA--PILPALLRLLHS-TDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLV  285 (514)
T ss_pred             HHHHHHHHcCCCCCCcHH-------HHH--HHHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHH
Confidence            999999999988766543       222  568999999986 589999999999999995 789999999999999999


Q ss_pred             HHHhccCCCCcHHHHHHHHHHHHHhh-CCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 010533          361 RCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARA  439 (508)
Q Consensus       361 ~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i  439 (508)
                      .+|....  .  .++..|+.+++|++ |+|...+.+++.|++|.|..+|..+. ...+++.|||+|+|++.+++++.+++
T Consensus       286 ~lL~~~~--~--~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~-~~~ikkEAcW~iSNItAG~~~qiqaV  360 (514)
T KOG0166|consen  286 DLLGHSS--P--KVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSP-KESIKKEACWTISNITAGNQEQIQAV  360 (514)
T ss_pred             HHHcCCC--c--ccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCc-chhHHHHHHHHHHHhhcCCHHHHHHH
Confidence            9998642  2  68899999999995 78899999999999999999998433 35699999999999999999999999


Q ss_pred             HhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhh-cCccchHHHHhcc
Q 010533          440 MEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA-RNPENSFCSVMVS  487 (508)
Q Consensus       440 ~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~-~~~e~~~~~~~~g  487 (508)
                      +++|.+|.|+.+|++  .+.++|++|||||.|+++ +++++..++++.|
T Consensus       361 ida~l~p~Li~~l~~--~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~g  407 (514)
T KOG0166|consen  361 IDANLIPVLINLLQT--AEFDIRKEAAWAISNLTSSGTPEQIKYLVEQG  407 (514)
T ss_pred             HHcccHHHHHHHHhc--cchHHHHHHHHHHHhhcccCCHHHHHHHHHcC
Confidence            999999999999975  468999999999999986 6899999999998

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=7.7e-37  Score=296.34  Aligned_cols=335  Identities=13%  Similarity=0.151  Sum_probs=288.2

Q ss_pred             HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHh
Q 010533          124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL  203 (508)
Q Consensus       124 l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l  203 (508)
                      +..|...+-+.       |.+.+.++...+|++.+++ ..+...-++++|+||.+|++|...  ....++..|.|+|+++
T Consensus        73 lp~lt~~l~Sd-------Die~q~qav~kFR~~LS~E-~~PPIq~VIdaGvVpRfvefm~~~--q~~mlqfEAaWalTNi  142 (526)
T COG5064          73 LPQLTQQLFSD-------DIEQQLQAVYKFRKLLSKE-TSPPIQPVIDAGVVPRFVEFMDEI--QRDMLQFEAAWALTNI  142 (526)
T ss_pred             hHHHHHHHhhh-------HHHHHHHHHHHHHHHhccc-cCCCchhHHhccccHHHHHHHHhc--chhHHHHHHHHHHhhh
Confidence            44555556665       8999999999999988874 344456788999999999999764  2346677889999998


Q ss_pred             hcCCc-chhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh--HHHHH
Q 010533          204 VHDVQ-STETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN--DSIQS  280 (508)
Q Consensus       204 ~~~~~-~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~--~~~~~  280 (508)
                      +.+.. .+..++++|++|.++.+|.  +.+.+|.+++.|+|++++.+++..|+.+.+.|++.+|+.+|.+...  ..+++
T Consensus       143 aSGtt~QTkvVvd~~AVPlfiqlL~--s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn  220 (526)
T COG5064         143 ASGTTQQTKVVVDAGAVPLFIQLLS--STEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRN  220 (526)
T ss_pred             ccCcccceEEEEeCCchHHHHHHHc--CchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHH
Confidence            87763 3477889999999999997  4588999999999999999999999999999999999999997644  88999


Q ss_pred             HHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc-ChhhHhHHhhcCCHHHH
Q 010533          281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDAL  359 (508)
Q Consensus       281 A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~-~~e~~~~i~e~Ggi~~L  359 (508)
                      +.|+|+|||++..+...       +..|.  .++|.|.+|+-+. |++++.++||++++|+. .+|..+.|.+.|..+.|
T Consensus       221 ~TWtLSNlcRGknP~P~-------w~~is--qalpiL~KLiys~-D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RL  290 (526)
T COG5064         221 ATWTLSNLCRGKNPPPD-------WSNIS--QALPILAKLIYSR-DPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRL  290 (526)
T ss_pred             hHHHHHHhhCCCCCCCc-------hHHHH--HHHHHHHHHHhhc-CHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHH
Confidence            99999999998876543       22333  3689999999864 78999999999999998 66778899999999999


Q ss_pred             HHHHhccCCCCcHHHHHHHHHHHHHhh-CCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 010533          360 LRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAAR  438 (508)
Q Consensus       360 v~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~  438 (508)
                      +++|.+.    +..++..+++.++|+. |+|...+.|+++|+++.+-.+|.  +....+++.+||+|+|++.++.++.++
T Consensus       291 vElLs~~----sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs--~~ke~irKEaCWTiSNITAGnteqiqa  364 (526)
T COG5064         291 VELLSHE----SAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLS--SPKENIRKEACWTISNITAGNTEQIQA  364 (526)
T ss_pred             HHHhcCc----cccccCHHHHhhcCeeecCccceehheecccHHHHHHHhc--ChhhhhhhhhheeecccccCCHHHHHH
Confidence            9999853    3479999999999985 78899999999999999999998  556789999999999999999999999


Q ss_pred             HHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhh---cCccchHHHHhccc
Q 010533          439 AMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA---RNPENSFCSVMVSR  488 (508)
Q Consensus       439 i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~---~~~e~~~~~~~~g~  488 (508)
                      +++++.+|+|+.+|..  .+-.++++|||||.|..+   +-|++.++++++|-
T Consensus       365 vid~nliPpLi~lls~--ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~  415 (526)
T COG5064         365 VIDANLIPPLIHLLSS--AEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGF  415 (526)
T ss_pred             HHhcccchHHHHHHHH--HHHHHHHHHHHHHHhhhccccCCchHHHHHHHccc
Confidence            9999999999999975  467899999999999986   36999999999984

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=2.5e-35  Score=285.86  Aligned_cols=385  Identities=16%  Similarity=0.187  Sum_probs=319.3

Q ss_pred             cchhhhccCCchhhhhhhhhh----cccCCCCC-----CCCCCcCCCcccccccCCccCCCCc----chhhhhhHHHHH-
Q 010533            5 PKSYYKHFSNSEQIDFQKQSS----LITLPQPR-----AHPFVPKDHPFFVRTDLTAHEMGPP----KTVRTISQEAFD-   70 (508)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~isQetfd-   70 (508)
                      |+-.-.-||++.|.|+|++-+    ||+|-+||     ..|.||+||+|+.......+||+++    +++++.||+|-- 
T Consensus        74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvV  153 (526)
T COG5064          74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVV  153 (526)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEE
Confidence            444445799999999999988    99999999     8899999999999999999999998    999999999972 


Q ss_pred             ---HHHHHHHhhcCCChhHHHHHHHHHHhhccccCCCccccCCCCCCCCCChHH--HHHHHHHHHhhcCCCCCChhhHHH
Q 010533           71 ---EVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLI--QSLERLKQLDLNSKDKFSDEDLNE  145 (508)
Q Consensus        71 ---~~v~eni~~~~m~p~eal~~aI~q~~~qgvdLs~i~~~~~~~~~~~~~~v~--~~l~~L~~~l~~~~~~~~~~~~~~  145 (508)
                         .+|--+|..+.-...+..+++|       |.|+||..|.+++++.    |+  .+++.+...+.++     ..+...
T Consensus       154 vd~~AVPlfiqlL~s~~~~V~eQav-------WALGNiAGDS~~~RD~----vL~~galeplL~ll~ss-----~~~ism  217 (526)
T COG5064         154 VDAGAVPLFIQLLSSTEDDVREQAV-------WALGNIAGDSEGCRDY----VLQCGALEPLLGLLLSS-----AIHISM  217 (526)
T ss_pred             EeCCchHHHHHHHcCchHHHHHHHH-------HHhccccCCchhHHHH----HHhcCchHHHHHHHHhc-----cchHHH
Confidence               2344478888888888889999       9999999999998776    66  4788887776653     235789


Q ss_pred             HHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcch-hHHHhcCChHHHHH
Q 010533          146 MMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST-ETFRTGGGPKLLVN  224 (508)
Q Consensus       146 ~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~-~~i~~~ggi~~Lv~  224 (508)
                      ++.+.|.|.++|...+-++.+.-  -+.++|+|..|+.+   .|.+++..|+|+++++.++...+ ..+++.|..+.||+
T Consensus       218 lRn~TWtLSNlcRGknP~P~w~~--isqalpiL~KLiys---~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvE  292 (526)
T COG5064         218 LRNATWTLSNLCRGKNPPPDWSN--ISQALPILAKLIYS---RDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVE  292 (526)
T ss_pred             HHHhHHHHHHhhCCCCCCCchHH--HHHHHHHHHHHHhh---cCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHH
Confidence            99999999999987433444333  34579999999988   48999999999999999887444 78899999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchH
Q 010533          225 ILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGY  304 (508)
Q Consensus       225 lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~  304 (508)
                      +|.+  ++..++.-+++.++++.++++...+.++..|+++.+-.+|.++.+.+.++|||+++|++.+.         .++
T Consensus       293 lLs~--~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGn---------teq  361 (526)
T COG5064         293 LLSH--ESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGN---------TEQ  361 (526)
T ss_pred             HhcC--ccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCC---------HHH
Confidence            9974  57889999999999999999999999999999999999999877788899999999999755         467


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc----ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHH
Q 010533          305 ARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV----NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCS  380 (508)
Q Consensus       305 ~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~----~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~  380 (508)
                      ++.+.+++.+|+|+++|... +-.+.+++||+++|...    .++..+.+++.|.|++|.++|.-. +.   .+.+.++.
T Consensus       362 iqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~-dN---kiiev~LD  436 (526)
T COG5064         362 IQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVV-DN---KIIEVALD  436 (526)
T ss_pred             HHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhcc-Cc---cchhhhHH
Confidence            88889999999999999874 44578999999999864    568889999999999999999854 22   57777888


Q ss_pred             HHHHhh--C---------CchhHHHHH-hCCcHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 010533          381 LLSKLA--G---------SDSNKSAII-ENGGMDKLIVVSARFSDDASVLQEVMSIITVL  428 (508)
Q Consensus       381 aL~~La--~---------~~~~k~~Iv-~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~L  428 (508)
                      ++.++-  |         +...-...+ ++||++.+-.+=.  +.+..+-..|-..+-..
T Consensus       437 ~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~--s~n~~iy~KAYsIIe~f  494 (526)
T COG5064         437 AIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQD--SVNRTIYDKAYSIIEKF  494 (526)
T ss_pred             HHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhh--ccccHHHHHHHHHHHHH
Confidence            888863  1         111122334 4999999988877  67778888887776654

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=1.4e-32  Score=321.69  Aligned_cols=329  Identities=16%  Similarity=0.173  Sum_probs=276.9

Q ss_pred             hHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCC-cchhHHHhcCChH
Q 010533          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDV-QSTETFRTGGGPK  220 (508)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~-~~~~~i~~~ggi~  220 (508)
                      +.+.+.++.+.|+.+|..  +.+++..+.+.|++|.|+++|++.   +..++..|+++|.+++.+. +++..++++||+|
T Consensus       417 ~~evQ~~Av~aL~~L~~~--~~e~~~aIi~~ggIp~LV~LL~s~---s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP  491 (2102)
T PLN03200        417 TADVQEELIRALSSLCCG--KGGLWEALGGREGVQLLISLLGLS---SEQQQEYAVALLAILTDEVDESKWAITAAGGIP  491 (2102)
T ss_pred             CHHHHHHHHHHHHHHhCC--CHHHHHHHHHcCcHHHHHHHHcCC---CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence            578899999999999987  899999999999999999999984   6788889999999998755 4578899999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhh---
Q 010533          221 LLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVV---  297 (508)
Q Consensus       221 ~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~---  297 (508)
                      .|+++|.  +++.++++.|+|+|+|+|...++++..+.+.|++++|+++|++++...++.|+|+|++|+.+.+....   
T Consensus       492 ~LV~LL~--s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~L  569 (2102)
T PLN03200        492 PLVQLLE--TGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQL  569 (2102)
T ss_pred             HHHHHHc--CCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHH
Confidence            9999997  45789999999999999876555565566889999999999998888999999999999754433210   


Q ss_pred             ------------------hh------hcchHHHHHH-hcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc-ChhhHhHHh
Q 010533          298 ------------------AS------QVYGYARRFA-KIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVA  351 (508)
Q Consensus       298 ------------------~~------~a~~~~~~i~-~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~-~~e~~~~i~  351 (508)
                                        ++      ...+.....+ ..||++.|+++|+++ ++.+++.++|+|.+++. +.+++..++
T Consensus       570 v~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg-s~~ikk~Aa~iLsnL~a~~~d~~~avv  648 (2102)
T PLN03200        570 TALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS-KEETQEKAASVLADIFSSRQDLCESLA  648 (2102)
T ss_pred             HHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence                              00      0001111112 468999999999986 57799999999999987 778899999


Q ss_pred             hcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh--CCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010533          352 ENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA--GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS  429 (508)
Q Consensus       352 e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La--~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La  429 (508)
                      ..|+|++|+.+|+...    .+++++++++|.+|+  ++++++..+++.|++++|+++|+  ..+..+++.++.+|.+|+
T Consensus       649 ~agaIpPLV~LLss~~----~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~--~~d~~v~e~Al~ALanLl  722 (2102)
T PLN03200        649 TDEIINPCIKLLTNNT----EAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAK--SSSIEVAEQAVCALANLL  722 (2102)
T ss_pred             HcCCHHHHHHHHhcCC----hHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHh--CCChHHHHHHHHHHHHHH
Confidence            9999999999998642    389999999999998  45677888999999999999998  678899999999999999


Q ss_pred             cCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCc---cchHHHHhcc
Q 010533          430 LRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNP---ENSFCSVMVS  487 (508)
Q Consensus       430 ~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~---e~~~~~~~~g  487 (508)
                       .+++.+.++.+.|+++.|+++|+.+  +.+.+++|+|||.+|+.+.|   ....++...|
T Consensus       723 -~~~e~~~ei~~~~~I~~Lv~lLr~G--~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g  780 (2102)
T PLN03200        723 -SDPEVAAEALAEDIILPLTRVLREG--TLEGKRNAARALAQLLKHFPVDDVLKDSVQCRG  780 (2102)
T ss_pred             -cCchHHHHHHhcCcHHHHHHHHHhC--ChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhC
Confidence             4888999999999999999999864  57889999999999998766   3446666666

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.1e-33  Score=290.45  Aligned_cols=379  Identities=16%  Similarity=0.181  Sum_probs=315.5

Q ss_pred             hhccCCchhhhhhhhhh----cccCCCCC-----CCCCCcCCCcccccccCCccCCCCc----chhhhhhHHHHHHHHHH
Q 010533            9 YKHFSNSEQIDFQKQSS----LITLPQPR-----AHPFVPKDHPFFVRTDLTAHEMGPP----KTVRTISQEAFDEVVKE   75 (508)
Q Consensus         9 ~~~~~~~~~~~~~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~isQetfd~~v~e   75 (508)
                      -+-||++.+.|+.++++    ||.+++||     +.|+||.+|.||.|.+++++||+++    ++|++.|++|- .||..
T Consensus        73 ~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~-~vv~a  151 (514)
T KOG0166|consen   73 AALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTK-VVVDA  151 (514)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcc-ccccC
Confidence            35689999999999999    99999999     7799999999999999999999999    89999999988 66665


Q ss_pred             -----HHhhcCCChhHHHHHHHHHHhhccccCCCccccCCCCCCCCCChHH--HHHHHHHHHhhcCCCCCChhhHHHHHH
Q 010533           76 -----NMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLI--QSLERLKQLDLNSKDKFSDEDLNEMMG  148 (508)
Q Consensus        76 -----ni~~~~m~p~eal~~aI~q~~~qgvdLs~i~~~~~~~~~~~~~~v~--~~l~~L~~~l~~~~~~~~~~~~~~~~~  148 (508)
                           .+..+.-...+..++++       |.|+||.+|++..++.    |+  .++++|...+....      ....++.
T Consensus       152 gavp~fi~Ll~s~~~~v~eQav-------WALgNIagds~~~Rd~----vl~~g~l~pLl~~l~~~~------~~~~lRn  214 (514)
T KOG0166|consen  152 GAVPIFIQLLSSPSADVREQAV-------WALGNIAGDSPDCRDY----VLSCGALDPLLRLLNKSD------KLSMLRN  214 (514)
T ss_pred             CchHHHHHHhcCCcHHHHHHHH-------HHHhccccCChHHHHH----HHhhcchHHHHHHhcccc------chHHHHH
Confidence                 56666776677779999       9999999999887665    55  58889988887651      2478899


Q ss_pred             HHHHHHHHhCCC-CChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcc-hhHHHhcCChHHHHHHH
Q 010533          149 LFDKLIELCGGN-EGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPKLLVNIL  226 (508)
Q Consensus       149 al~~L~~lc~~~-~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~-~~~i~~~ggi~~Lv~lL  226 (508)
                      ++|.|.++|+.+ +.|+   +-.-..++|.|..++.+   .|.+++..|+|+|++|+++.+. ...+++.|+++.||++|
T Consensus       215 ~tW~LsNlcrgk~P~P~---~~~v~~iLp~L~~ll~~---~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL  288 (514)
T KOG0166|consen  215 ATWTLSNLCRGKNPSPP---FDVVAPILPALLRLLHS---TDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLL  288 (514)
T ss_pred             HHHHHHHHHcCCCCCCc---HHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHH
Confidence            999999999974 3343   33445689999999998   4899999999999999977644 48889999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCcchhhhhhcchHH
Q 010533          227 IDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYA  305 (508)
Q Consensus       227 ~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~  305 (508)
                      ..  .+..++..|+++++|++++++...+.++..|+++.|..+|.++.. ...++|||+|+|++.+.         .+++
T Consensus       289 ~~--~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~---------~~qi  357 (514)
T KOG0166|consen  289 GH--SSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGN---------QEQI  357 (514)
T ss_pred             cC--CCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCC---------HHHH
Confidence            74  467788899999999999999999999999999999999995444 57788999999999754         4678


Q ss_pred             HHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc--ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHH
Q 010533          306 RRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV--NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLS  383 (508)
Q Consensus       306 ~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~--~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~  383 (508)
                      +.++++|.+|.|+++|+++ +-.++++++|+++|++.  +++....+++.|.|+++.++|.- .|   .+++..++.+|.
T Consensus       358 qaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~-~D---~~ii~v~Ld~l~  432 (514)
T KOG0166|consen  358 QAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTC-PD---VKIILVALDGLE  432 (514)
T ss_pred             HHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccC-CC---hHHHHHHHHHHH
Confidence            8899999999999999986 56789999999999986  67778899999999999999953 33   378999999999


Q ss_pred             Hhh--C----C---chhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010533          384 KLA--G----S---DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS  429 (508)
Q Consensus       384 ~La--~----~---~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La  429 (508)
                      +|-  +    .   ......|-++||++.+=. |+. +.+..+-+.|...+-.-=
T Consensus       433 nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~-LQ~-hen~~Iy~~A~~II~~yf  485 (514)
T KOG0166|consen  433 NILKVGEAEKNRGTNPLAIMIEEAGGLDKIEN-LQS-HENEEIYKKAYKIIDTYF  485 (514)
T ss_pred             HHHHHHHHhccccccHHHHHHHHccChhHHHH-hhc-cccHHHHHHHHHHHHHhc
Confidence            873  1    1   233455678899988754 444 456788888888777653

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.98  E-value=8.5e-30  Score=298.36  Aligned_cols=348  Identities=15%  Similarity=0.123  Sum_probs=277.3

Q ss_pred             HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHH
Q 010533          122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA  201 (508)
Q Consensus       122 ~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa  201 (508)
                      +++..|...+.+.    ...|.--...++..|+++|..  ....+..++++|+||.|+.+|++   +++.++..|+++|.
T Consensus       144 GaVp~Lv~lL~~g----sk~d~~L~~~Av~AL~nLs~~--~en~~~~IIeaGaVp~LV~LLsS---~d~~lQ~eAa~aLa  214 (2102)
T PLN03200        144 GVVPSLWDQLQPG----NKQDKVVEGLLTGALRNLCGS--TDGFWSATLEAGGVDILVKLLSS---GNSDAQANAASLLA  214 (2102)
T ss_pred             CChHHHHHHHhCC----chhhHHHHHHHHHHHHHHhcC--ccchHHHHHHcCCHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence            3566676666653    011222234567899999986  55566778999999999999987   47889999999998


Q ss_pred             HhhcC-CcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-----
Q 010533          202 LLVHD-VQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-----  275 (508)
Q Consensus       202 ~l~~~-~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-----  275 (508)
                      .++.. .+.+..+++.|++|.|+++|+++ ++..+++.|+|+|.++|++++++|+.+++.|+|+.|++++.++..     
T Consensus       215 ~Lass~ee~~~aVIeaGaVP~LV~LL~sg-~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~  293 (2102)
T PLN03200        215 RLMMAFESSISKVLDAGAVKQLLKLLGQG-NEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQG  293 (2102)
T ss_pred             HHHcCChHHHHHHHHCCCHHHHHHHHccC-CChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhcc
Confidence            88754 35688999999999999999753 467999999999999999999999999999999999999986442     


Q ss_pred             ----HHHHHHHHHHHHhcCCCcc------------h--h---h-----------hhhcchHHHHHHhcCCHHHHHHHHhc
Q 010533          276 ----DSIQSLYDAIRVLLTPDDD------------Q--V---V-----------ASQVYGYARRFAKIGIARALVHSLHA  323 (508)
Q Consensus       276 ----~~~~~A~~aL~~L~~~dd~------------r--~---~-----------~~~a~~~~~~i~~~g~i~~Lv~lL~~  323 (508)
                          ..+++|.|+|.|||.+-..            |  .   .           +....+..+.+-...+.+.|+++++.
T Consensus       294 ~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~  373 (2102)
T PLN03200        294 EFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKP  373 (2102)
T ss_pred             ccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCC
Confidence                4588999999999975211            0  0   0           00111111211123455889999886


Q ss_pred             CCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCchhHHHHHhCCcHH
Q 010533          324 GLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMD  402 (508)
Q Consensus       324 ~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~Ggl~  402 (508)
                      .....+++.+..+|+.|..|..+++.+.+.|++++|+.++....    .++++.++++|++|+ ++++.++.|++.||+|
T Consensus       374 k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~----~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp  449 (2102)
T PLN03200        374 RDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMAT----ADVQEELIRALSSLCCGKGGLWEALGGREGVQ  449 (2102)
T ss_pred             CCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCC----HHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHH
Confidence            53333468888999999999999999999999999999998642    389999999999999 4678999999999999


Q ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHH
Q 010533          403 KLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFC  482 (508)
Q Consensus       403 ~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~  482 (508)
                      .|+++|.  ++++.+|+.|+++|.+|+.++++++..|+++|++|.|+++|..  ++..+|++|+|+|.|++.++++.+..
T Consensus       450 ~LV~LL~--s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s--~~~~iqeeAawAL~NLa~~~~qir~i  525 (2102)
T PLN03200        450 LLISLLG--LSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET--GSQKAKEDSATVLWNLCCHSEDIRAC  525 (2102)
T ss_pred             HHHHHHc--CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCcHHHHHH
Confidence            9999998  5678999999999999999999999999999999999999963  46799999999999999865555544


Q ss_pred             HHhcc
Q 010533          483 SVMVS  487 (508)
Q Consensus       483 ~~~~g  487 (508)
                      +.+.|
T Consensus       526 V~~aG  530 (2102)
T PLN03200        526 VESAG  530 (2102)
T ss_pred             HHHCC
Confidence            54656

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1e-26  Score=227.76  Aligned_cols=330  Identities=15%  Similarity=0.130  Sum_probs=277.2

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHH
Q 010533          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (508)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~  202 (508)
                      .+++....+++.       |...++.+-.++.+++-   +.+++..+++.+++..|+.-+-+   +.-++++.+.+.+.+
T Consensus        86 s~epvl~llqs~-------d~~Iq~aa~~alGnlAV---n~enk~liv~l~Gl~~Li~qmmt---d~vevqcnaVgCitn  152 (550)
T KOG4224|consen   86 SNEPVLALLQSC-------DKCIQCAAGEALGNLAV---NMENKGLIVSLLGLDLLILQMMT---DGVEVQCNAVGCITN  152 (550)
T ss_pred             hhhHHHHHHhCc-------chhhhhhhhhhhcccee---ccCCceEEEeccChHHHHHHhcC---CCcEEEeeehhhhhh
Confidence            445555555554       77778888888888887   57788889998888887765544   245788888888888


Q ss_pred             hhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHH
Q 010533          203 LVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLY  282 (508)
Q Consensus       203 l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~  282 (508)
                      |..-..+|..+...||+.++.++-+  +.+..++..+..+|.++ +...+||+.++.+|++|.|++++++++..++..+|
T Consensus       153 LaT~d~nk~kiA~sGaL~pltrLak--skdirvqrnatgaLlnm-Ths~EnRr~LV~aG~lpvLVsll~s~d~dvqyyct  229 (550)
T KOG4224|consen  153 LATFDSNKVKIARSGALEPLTRLAK--SKDIRVQRNATGALLNM-THSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCT  229 (550)
T ss_pred             hhccccchhhhhhccchhhhHhhcc--cchhhHHHHHHHHHHHh-hhhhhhhhhhhccCCchhhhhhhccCChhHHHHHH
Confidence            8776677899999999999999543  56889999999999998 56788999999999999999999998889999999


Q ss_pred             HHHHHhcCCCcchhhhhhcchHHHHHHhcC--CHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHH
Q 010533          283 DAIRVLLTPDDDQVVASQVYGYARRFAKIG--IARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALL  360 (508)
Q Consensus       283 ~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g--~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv  360 (508)
                      -++.++..+.-          +.|.+++.+  .++.|++++.+++ +.++..+..+|++|+.+.++...|+++|++|.++
T Consensus       230 taisnIaVd~~----------~Rk~Laqaep~lv~~Lv~Lmd~~s-~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv  298 (550)
T KOG4224|consen  230 TAISNIAVDRR----------ARKILAQAEPKLVPALVDLMDDGS-DKVKCQAGLALRNLASDTEYQREIVEAGSLPLLV  298 (550)
T ss_pred             HHhhhhhhhHH----------HHHHHHhcccchHHHHHHHHhCCC-hHHHHHHHHHHhhhcccchhhhHHHhcCCchHHH
Confidence            99999987542          345667777  9999999999874 5588889999999999999999999999999999


Q ss_pred             HHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 010533          361 RCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAM  440 (508)
Q Consensus       361 ~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~  440 (508)
                      ++|++.  ..  .+..+.+.+++|++-++-|..-|+++|.+.+||++|. +.+++.+|-+|..+|++|+..+..|...|.
T Consensus       299 ~Llqs~--~~--plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~-~~dnEeiqchAvstLrnLAasse~n~~~i~  373 (550)
T KOG4224|consen  299 ELLQSP--MG--PLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLR-AGDNEEIQCHAVSTLRNLAASSEHNVSVIR  373 (550)
T ss_pred             HHHhCc--ch--hHHHHHHHHHhhcccccCcccceecccchhHHHHHHh-cCCchhhhhhHHHHHHHHhhhhhhhhHHHh
Confidence            999764  33  6777889999999999999999999999999999997 467788999999999999987889999999


Q ss_pred             hcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHhcc
Q 010533          441 EAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMVS  487 (508)
Q Consensus       441 ~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~g  487 (508)
                      +.|+++.+.+++...|  -.+|.+-..++.-|+. +.+.+.+|++.|
T Consensus       374 esgAi~kl~eL~lD~p--vsvqseisac~a~Lal-~d~~k~~lld~g  417 (550)
T KOG4224|consen  374 ESGAIPKLIELLLDGP--VSVQSEISACIAQLAL-NDNDKEALLDSG  417 (550)
T ss_pred             hcCchHHHHHHHhcCC--hhHHHHHHHHHHHHHh-ccccHHHHhhcC
Confidence            9999999999998765  4567665555555554 677888999888

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=7.3e-26  Score=221.79  Aligned_cols=331  Identities=19%  Similarity=0.211  Sum_probs=276.7

Q ss_pred             HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHH
Q 010533          122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA  201 (508)
Q Consensus       122 ~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa  201 (508)
                      ++++.+.. +.+.      .|...+..++..|.++..   +.++|..++.+|++|.||++++++   |.+++..|.++++
T Consensus       167 GaL~pltr-Laks------kdirvqrnatgaLlnmTh---s~EnRr~LV~aG~lpvLVsll~s~---d~dvqyycttais  233 (550)
T KOG4224|consen  167 GALEPLTR-LAKS------KDIRVQRNATGALLNMTH---SRENRRVLVHAGGLPVLVSLLKSG---DLDVQYYCTTAIS  233 (550)
T ss_pred             cchhhhHh-hccc------chhhHHHHHHHHHHHhhh---hhhhhhhhhccCCchhhhhhhccC---ChhHHHHHHHHhh
Confidence            36666666 3332      277788899999999987   799999999999999999999994   8899999999999


Q ss_pred             HhhcCCcchhHHHhcC--ChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHH
Q 010533          202 LLVHDVQSTETFRTGG--GPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQ  279 (508)
Q Consensus       202 ~l~~~~~~~~~i~~~g--gi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~  279 (508)
                      .+.-+...|..+.+.+  .++.||.+++.  ++++++.+|..+|++++++ +++...|+++|++|.++++|+++....+.
T Consensus       234 nIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~--~s~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~~~plil  310 (550)
T KOG4224|consen  234 NIAVDRRARKILAQAEPKLVPALVDLMDD--GSDKVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSPMGPLIL  310 (550)
T ss_pred             hhhhhHHHHHHHHhcccchHHHHHHHHhC--CChHHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCcchhHHH
Confidence            9988777788888887  89999999985  5789999999999999765 45677889999999999999886555555


Q ss_pred             HHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc-ChhhHhHHhhcCCHHH
Q 010533          280 SLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDA  358 (508)
Q Consensus       280 ~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~-~~e~~~~i~e~Ggi~~  358 (508)
                      +....++|++...-+.          -.|++.|.+.|||.+|+.+.+.+++..+..+|++||. .+.++..|.++|+|+.
T Consensus       311 asVaCIrnisihplNe----------~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~k  380 (550)
T KOG4224|consen  311 ASVACIRNISIHPLNE----------VLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPK  380 (550)
T ss_pred             HHHHHHhhcccccCcc----------cceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHH
Confidence            5555699998765443          3577999999999999988777899999999999999 6778899999999999


Q ss_pred             HHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 010533          359 LLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAAR  438 (508)
Q Consensus       359 Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~  438 (508)
                      +..++.+.+-    +++.+.-.+++.|+.++..|..+.+.|.+|.|+..+.  +.+.+++.+++.+|.|++. +.++...
T Consensus       381 l~eL~lD~pv----svqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~--s~s~Ev~gNaAaAL~Nlss-~v~~Yar  453 (550)
T KOG4224|consen  381 LIELLLDGPV----SVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTG--SESEEVRGNAAAALINLSS-DVEHYAR  453 (550)
T ss_pred             HHHHHhcCCh----hHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccC--ccchhhcccHHHHHHhhhh-hhHHHHH
Confidence            9999988643    7999999999999999999999999999999999998  7789999999999999995 7777777


Q ss_pred             HHhc------CcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHhcc
Q 010533          439 AMEA------GSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMVS  487 (508)
Q Consensus       439 i~~~------G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~g  487 (508)
                      ++++      |.-..|++.++.|  ...+..-+.|-|-.|...+..-...|+...
T Consensus       454 viEawd~P~~gi~g~L~Rfl~S~--~~tf~hia~wTI~qLle~h~~~~~~~i~~~  506 (550)
T KOG4224|consen  454 VIEAWDHPVQGIQGRLARFLASH--ELTFRHIARWTIQQLLEDHDLPLTAFIQSS  506 (550)
T ss_pred             HHHHhcCcchhHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHhCCccHHHHHhCc
Confidence            7774      4456888888766  356677799999998864444445555543

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.94  E-value=9.7e-24  Score=205.26  Aligned_cols=320  Identities=16%  Similarity=0.119  Sum_probs=267.3

Q ss_pred             hHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCC-cchhHHHhcCChH
Q 010533          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDV-QSTETFRTGGGPK  220 (508)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~-~~~~~i~~~ggi~  220 (508)
                      +...+.++|..|..+..+  -|    .+.++.+...++.+|.... .+.++.+..+..+...+-.+ .+|+.|++.+..+
T Consensus       120 ~~~~l~ksL~al~~lt~~--qp----dl~da~g~~vvv~lL~~~~-~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~  192 (461)
T KOG4199|consen  120 NESVLKKSLEAINSLTHK--QP----DLFDAEAMAVVLKLLALKV-ESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE  192 (461)
T ss_pred             chhHHHHHHHHHHHhhcC--Cc----chhccccHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence            788889999999988875  44    3556788999999996542 56788888888886655443 5689999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhhcCCh---------hhHHHHHHcCcHHHHHHHHhcCC-hHHHHHHHHHHHHhcC
Q 010533          221 LLVNILIDGNEDPEILNSGFAVVAASATGNE---------VVKESYMELKIDELILEILSRQR-NDSIQSLYDAIRVLLT  290 (508)
Q Consensus       221 ~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e---------~nr~~i~~~G~i~~Lv~lL~~~~-~~~~~~A~~aL~~L~~  290 (508)
                      .+...|.++... .+....+|+++.+...++         ..-..|.+.|++..|+++|..+- +.++..+|.+|..|+.
T Consensus       193 Li~~~l~~~gk~-~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV  271 (461)
T KOG4199|consen  193 LILQVLNREGKT-RTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV  271 (461)
T ss_pred             HHHHHHcccCcc-HHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence            999998876444 777888999998865543         23457788899999999999874 4788899999999997


Q ss_pred             CCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCC---hhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccC
Q 010533          291 PDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLS---SPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSG  367 (508)
Q Consensus       291 ~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d---~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~  367 (508)
                      .|          |.++.|++.||+..|+.+|.+..+   +++...+|.+|+.||.+++++..|++.||.+.++.++..|.
T Consensus       272 r~----------E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~  341 (461)
T KOG4199|consen  272 RD----------EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHS  341 (461)
T ss_pred             HH----------HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcC
Confidence            66          457889999999999999998542   45778899999999999999999999999999999999887


Q ss_pred             CCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHH
Q 010533          368 LQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGD  446 (508)
Q Consensus       368 ~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~  446 (508)
                      ++  +-|..+++.++.-|+- .|++...+++.|+-...+++|++|+....+|++||++++||+.|+.+++..++..|+-.
T Consensus       342 ~~--p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~  419 (461)
T KOG4199|consen  342 DD--PLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEK  419 (461)
T ss_pred             CC--hHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHH
Confidence            64  4899999999999985 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHh
Q 010533          447 LAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVM  485 (508)
Q Consensus       447 ~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~  485 (508)
                      +|..++..|++.   ...|-.|||.|.-+ .+++..+.-
T Consensus       420 Li~~A~~~h~tc---e~~akaALRDLGc~-v~lre~wtg  454 (461)
T KOG4199|consen  420 LIRTAKANHETC---EAAAKAALRDLGCD-VYLREEWTG  454 (461)
T ss_pred             HHHHHHhcCccH---HHHHHHHHHhcCcc-hhhHHHhcc
Confidence            999999888654   44566688988653 456655543

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.87  E-value=4.1e-19  Score=194.39  Aligned_cols=319  Identities=14%  Similarity=0.163  Sum_probs=263.5

Q ss_pred             HHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHH
Q 010533          146 MMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNI  225 (508)
Q Consensus       146 ~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~l  225 (508)
                      ++-++.-|-+++.   ++.....+.+.|.|+.|+++|++.   +.+++..+++.|..|+-..+++..+.+.|.++.|+++
T Consensus       266 lrv~~~lLlNLAe---d~~ve~kM~~~~iV~~Lv~~Ldr~---n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kL  339 (708)
T PF05804_consen  266 LRVAFYLLLNLAE---DPRVELKMVNKGIVSLLVKCLDRE---NEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKL  339 (708)
T ss_pred             HHHHHHHHHHHhc---ChHHHHHHHhcCCHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHH
Confidence            3455666777776   678888899999999999999874   6789999999999988777789999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHH
Q 010533          226 LIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYA  305 (508)
Q Consensus       226 L~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~  305 (508)
                      |.+  ++.+++..++++|.|+ +.++.+|..+++.|++|.|+.+|..++  ....+...|.+||.+|+.|.         
T Consensus       340 l~s--~~~~l~~~aLrlL~NL-Sfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~---------  405 (708)
T PF05804_consen  340 LPS--ENEDLVNVALRLLFNL-SFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARS---------  405 (708)
T ss_pred             hcC--CCHHHHHHHHHHHHHh-CcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHH---------
Confidence            974  5789999999999999 567789999999999999999998643  44557888999999886553         


Q ss_pred             HHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHH------------HHh---ccC---
Q 010533          306 RRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLR------------CID---DSG---  367 (508)
Q Consensus       306 ~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~------------lL~---~~~---  367 (508)
                       .+...+++|.|+++|-.++++.+..++.+++.||+.+..+++.+.+.||++.|++            +++   .|.   
T Consensus       406 -~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~  484 (708)
T PF05804_consen  406 -MFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPL  484 (708)
T ss_pred             -HHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchH
Confidence             4557789999999988877666667788889999999999999999999886653            221   121   


Q ss_pred             ----------------CCCcHHHHHHHHHHHHHhhCCchhHHHHH-hCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010533          368 ----------------LQGNKTVARICCSLLSKLAGSDSNKSAII-ENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL  430 (508)
Q Consensus       368 ----------------~~~~~~v~~~al~aL~~La~~~~~k~~Iv-~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~  430 (508)
                                      ...+.+..-+++++|+||+..+.....++ +.+.+|.|...|..+...+.++-+++..+..+| 
T Consensus       485 k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla-  563 (708)
T PF05804_consen  485 KELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLA-  563 (708)
T ss_pred             HHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHH-
Confidence                            00135788899999999987665555555 568899999999876667789999999999999 


Q ss_pred             CChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHhcc
Q 010533          431 RSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMVS  487 (508)
Q Consensus       431 ~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~g  487 (508)
                      .+++.+..+.+.|.++.++++|+....+.+..-+.+++...+..+ ++.|..++.+.
T Consensus       564 ~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h-~~tr~~ll~~~  619 (708)
T PF05804_consen  564 SDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH-EETREVLLKET  619 (708)
T ss_pred             CCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC-hHHHHHHHhcc
Confidence            489999999999999999999998877888888999999999875 77888887754

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.83  E-value=1.2e-17  Score=182.82  Aligned_cols=329  Identities=12%  Similarity=0.092  Sum_probs=264.3

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHH
Q 010533          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (508)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~  202 (508)
                      .+..|...+.+.       +.+.+.-++..|.+++-   ..+|+..+.+.|+||.|++++.+   ++.+++..++..|.+
T Consensus       291 iV~~Lv~~Ldr~-------n~ellil~v~fLkkLSi---~~ENK~~m~~~giV~kL~kLl~s---~~~~l~~~aLrlL~N  357 (708)
T PF05804_consen  291 IVSLLVKCLDRE-------NEELLILAVTFLKKLSI---FKENKDEMAESGIVEKLLKLLPS---ENEDLVNVALRLLFN  357 (708)
T ss_pred             CHHHHHHHHcCC-------CHHHHHHHHHHHHHHcC---CHHHHHHHHHcCCHHHHHHHhcC---CCHHHHHHHHHHHHH
Confidence            566677777665       77888889999999987   68899999999999999999988   467888899999999


Q ss_pred             hhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-HHHHHH
Q 010533          203 LVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSL  281 (508)
Q Consensus       203 l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~~A  281 (508)
                      |+.+.+.|..++..|.+|.|+.+|..    +..+..++.+|.+++ .++.+|..|...++++.|+++|-++++ .+..++
T Consensus       358 LSfd~~~R~~mV~~GlIPkLv~LL~d----~~~~~val~iLy~LS-~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~el  432 (708)
T PF05804_consen  358 LSFDPELRSQMVSLGLIPKLVELLKD----PNFREVALKILYNLS-MDDEARSMFAYTDCIPQLMQMLLENSEEEVQLEL  432 (708)
T ss_pred             hCcCHHHHHHHHHCCCcHHHHHHhCC----CchHHHHHHHHHHhc-cCHhhHHHHhhcchHHHHHHHHHhCCCccccHHH
Confidence            99988889999999999999999963    345567889999995 567899999999999999998877544 455567


Q ss_pred             HHHHHHhcCCCcchhhhhhcchHHHHHHhcC-------------------------------------CHHHHHHHHhcC
Q 010533          282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIG-------------------------------------IARALVHSLHAG  324 (508)
Q Consensus       282 ~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g-------------------------------------~i~~Lv~lL~~~  324 (508)
                      .+++.||+.+..+          ++.|.+.|                                     .|..|+.++..+
T Consensus       433 iaL~iNLa~~~rn----------aqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~  502 (708)
T PF05804_consen  433 IALLINLALNKRN----------AQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSG  502 (708)
T ss_pred             HHHHHHHhcCHHH----------HHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcC
Confidence            7888888876532          33333333                                     344555555554


Q ss_pred             CChhHHHHHHHHHHHhhcChhh-HhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHH
Q 010533          325 LSSPSLISASIALKAVAVNDEI-CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDK  403 (508)
Q Consensus       325 ~d~~~~~~a~~aL~~La~~~e~-~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~  403 (508)
                      .+.+.+.++.++|+||...+.. .+.+-+.+-+|.|.++|..+...  .+++-+++-.++.+|..+.....+++.|.++.
T Consensus       503 ~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~--dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~  580 (708)
T PF05804_consen  503 DSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASE--DDLLLEVVILLGTLASDPECAPLLAKSGLIPT  580 (708)
T ss_pred             CcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCC--hHHHHHHHHHHHHHHCCHHHHHHHHhCChHHH
Confidence            4566778888999999986544 44444678899999999865443  38999999999999999999999999999999


Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHh-cCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHH
Q 010533          404 LIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAME-AGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFC  482 (508)
Q Consensus       404 Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~-~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~  482 (508)
                      |+++|+.+..+....-+.+.++..+.. +++.+..++. .+++..++.+|  |..++.+++.|-.+|--++..+++-...
T Consensus       581 Li~LL~~kqeDdE~VlQil~~f~~ll~-h~~tr~~ll~~~~~~~ylidL~--~d~N~~ir~~~d~~Ldii~e~d~~w~~r  657 (708)
T PF05804_consen  581 LIELLNAKQEDDEIVLQILYVFYQLLF-HEETREVLLKETEIPAYLIDLM--HDKNAEIRKVCDNALDIIAEYDEEWAER  657 (708)
T ss_pred             HHHHHHhhCchHHHHHHHHHHHHHHHc-ChHHHHHHHhccchHHHHHHHh--cCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            999999888889999999999999985 6777777765 67888999999  6678999988888888887777665544


Q ss_pred             HH
Q 010533          483 SV  484 (508)
Q Consensus       483 ~~  484 (508)
                      +-
T Consensus       658 i~  659 (708)
T PF05804_consen  658 IR  659 (708)
T ss_pred             hh
Confidence            43

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.73  E-value=3.4e-15  Score=160.61  Aligned_cols=338  Identities=14%  Similarity=0.115  Sum_probs=256.6

Q ss_pred             hHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCC---cchhHHHhcCC
Q 010533          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDV---QSTETFRTGGG  218 (508)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~---~~~~~i~~~gg  218 (508)
                      +...+..|...|.-+|..  +..-+..+.+.|+||.||.+|.+   ...+++..|+++|-+|.-+.   .++-.+.+.+|
T Consensus       246 ~~~~qsnaaaylQHlcfg--d~~ik~~vrqlggI~kLv~Ll~~---~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~G  320 (717)
T KOG1048|consen  246 DPSVQSNAAAYLQHLCFG--DNKIKSRVRQLGGIPKLVALLDH---RNDEVQRQACGALRNLVFGKSTDSNKLAIKELNG  320 (717)
T ss_pred             ChhhhHHHHHHHHHHHhh--hHHHHHHHHHhccHHHHHHHhcC---CcHHHHHHHHHHHHhhhcccCCcccchhhhhcCC
Confidence            677788899999999998  88889999999999999999998   47899999999999987443   35688899999


Q ss_pred             hHHHHHHHhcCCCCHHHHHHHHH------------------------------------------------------HHH
Q 010533          219 PKLLVNILIDGNEDPEILNSGFA------------------------------------------------------VVA  244 (508)
Q Consensus       219 i~~Lv~lL~~~~~~~~v~~~a~~------------------------------------------------------~L~  244 (508)
                      |+.++++|+.. .|.++.+....                                                      +|+
T Consensus       321 v~~l~~~Lr~t-~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLR  399 (717)
T KOG1048|consen  321 VPTLVRLLRHT-QDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLR  399 (717)
T ss_pred             hHHHHHHHHhh-cchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhc
Confidence            99999999852 34555554444                                                      455


Q ss_pred             HhhcCChhhHHHHHHc-CcHHHHHHHHhcC------ChHHHHHHHHHHHHhcCCCcchhhh-------------------
Q 010533          245 ASATGNEVVKESYMEL-KIDELILEILSRQ------RNDSIQSLYDAIRVLLTPDDDQVVA-------------------  298 (508)
Q Consensus       245 ~l~~~~e~nr~~i~~~-G~i~~Lv~lL~~~------~~~~~~~A~~aL~~L~~~dd~r~~~-------------------  298 (508)
                      |+.+..++.|+.+.+. |.|..|+..+++.      ++..++++.-.|+||+..=+--++.                   
T Consensus       400 NlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~  479 (717)
T KOG1048|consen  400 NLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPA  479 (717)
T ss_pred             cccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcc
Confidence            5555556677888765 8899999988841      2367788878999998432100100                   


Q ss_pred             --hhcc-hHHHH----------------------HHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcCh-----hhHh
Q 010533          299 --SQVY-GYARR----------------------FAKIGIARALVHSLHAGLSSPSLISASIALKAVAVND-----EICK  348 (508)
Q Consensus       299 --~~a~-~~~~~----------------------i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~-----e~~~  348 (508)
                        .+.+ ...+.                      +...-+|.+-..+|....+..+++.++++|-||+...     ..+.
T Consensus       480 ~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~  559 (717)
T KOG1048|consen  480 ESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRG  559 (717)
T ss_pred             cccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHh
Confidence              0000 01111                      1111235555666775556788999999999998732     3455


Q ss_pred             HH-hhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCC----CHHHHHHHHH
Q 010533          349 SV-AENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSD----DASVLQEVMS  423 (508)
Q Consensus       349 ~i-~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~----~~~v~e~a~~  423 (508)
                      .| ...-|+++|+++|+...    ..|++.++.+|+||+.+..||..|. .++++-|++.|..+..    +.+....+|.
T Consensus       560 ~v~~kekgl~~l~~ll~~~~----~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~  634 (717)
T KOG1048|consen  560 AVFRKEKGLPPLVELLRNDD----SDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCH  634 (717)
T ss_pred             hhhhhccCccHHHHHHhcCC----chHHHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHH
Confidence            55 67889999999999742    2899999999999999999999887 6899999999975443    3578889999


Q ss_pred             HHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHhccccccH
Q 010533          424 IITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMVSRNLSD  492 (508)
Q Consensus       424 aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~g~~~~~  492 (508)
                      +|.++...+++|++.+.+.+|++.|+-+.+. ..++++-+.|+..|..|=. ..|.+..+-..|..-.+
T Consensus       635 tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s-~~S~k~~kaAs~vL~~lW~-y~eLh~~~kk~g~~q~~  701 (717)
T KOG1048|consen  635 TLNNIVRKNVLNAKDLLEIKGIPKLRLISKS-QHSPKEFKAASSVLDVLWQ-YKELHFKLKKKGFKQQD  701 (717)
T ss_pred             hHHHHHHHhHHHHHHHHhccChHHHHHHhcc-cCCHHHHHHHHHHHHHHHH-HHHHhhhHhhhhhHHHH
Confidence            9999998999999999999999999988876 5678888999999999855 46777777777754333

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.72  E-value=4e-16  Score=173.45  Aligned_cols=314  Identities=14%  Similarity=0.171  Sum_probs=242.4

Q ss_pred             HHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcc-----------------
Q 010533          147 MGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-----------------  209 (508)
Q Consensus       147 ~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~-----------------  209 (508)
                      .+-.+.|.++..   +++--......|.+|.|+.+|.-.+..+.+....|-.+|.++...+.+                 
T Consensus       212 ee~ar~fLemSs---s~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQI  288 (2195)
T KOG2122|consen  212 EEMARTFLEMSS---SPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQI  288 (2195)
T ss_pred             HHHHHHHHHhcc---CchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHH
Confidence            344556667766   566777888999999999999876655667777777777776654321                 


Q ss_pred             -------------------------------------------hhHHHhcCChHHHHHHHhcC----C------CCHHHH
Q 010533          210 -------------------------------------------TETFRTGGGPKLLVNILIDG----N------EDPEIL  236 (508)
Q Consensus       210 -------------------------------------------~~~i~~~ggi~~Lv~lL~~~----~------~~~~v~  236 (508)
                                                                 |...-+-||++.+-+||.-.    .      ..-.+.
T Consensus       289 raYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLR  368 (2195)
T KOG2122|consen  289 RAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALR  368 (2195)
T ss_pred             HHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence                                                       11122346666666655311    0      123477


Q ss_pred             HHHHHHHHHhhcCChhhHHHHH-HcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHH-hcCCH
Q 010533          237 NSGFAVVAASATGNEVVKESYM-ELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-KIGIA  314 (508)
Q Consensus       237 ~~a~~~L~~l~~~~e~nr~~i~-~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~-~~g~i  314 (508)
                      ..+..+|.|+.-++..||..+. ..|.+..+|..|.+..+++++-.+.+|+||+=.-|.         |.+.+. +.|-+
T Consensus       369 rYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~---------nmKkvLrE~GsV  439 (2195)
T KOG2122|consen  369 RYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADS---------NMKKVLRETGSV  439 (2195)
T ss_pred             HHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccc---------cHHHHHHhhhhH
Confidence            8888999999888888998877 559999999999998878888889999999954442         234444 77989


Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHhhc-ChhhHhHHhh-cCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh----CC
Q 010533          315 RALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAE-NGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA----GS  388 (508)
Q Consensus       315 ~~Lv~lL~~~~d~~~~~~a~~aL~~La~-~~e~~~~i~e-~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La----~~  388 (508)
                      ..|+.+.-.......+..+..|||||+. ..+|+..|.. .|++..|+.+|.-.....--.|++.+-++|+|.+    .+
T Consensus       440 taLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~  519 (2195)
T KOG2122|consen  440 TALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATC  519 (2195)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhcc
Confidence            9888875443345678999999999998 6789988886 5789999999974311212478899999999965    57


Q ss_pred             chhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHH
Q 010533          389 DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFM  468 (508)
Q Consensus       389 ~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~a  468 (508)
                      .+.++.+.+..++..|++.|+.|  +-.|.-++|++|+||..|+|+-++.+.+.|+++.|..++  |+++.-+-+-++.|
T Consensus       520 E~yRQILR~~NCLq~LLQ~LKS~--SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLI--hSKhkMIa~GSaaA  595 (2195)
T KOG2122|consen  520 EDYRQILRRHNCLQTLLQHLKSH--SLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLI--HSKHKMIAMGSAAA  595 (2195)
T ss_pred             chHHHHHHHhhHHHHHHHHhhhc--ceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHH--hhhhhhhhhhHHHH
Confidence            78899999999999999999944  578999999999999999999999999999999999998  66777888889999


Q ss_pred             HHHhhhcC
Q 010533          469 IRNLVARN  476 (508)
Q Consensus       469 L~nL~~~~  476 (508)
                      |+||...-
T Consensus       596 LrNLln~R  603 (2195)
T KOG2122|consen  596 LRNLLNFR  603 (2195)
T ss_pred             HHHHhcCC
Confidence            99998643

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.61  E-value=1.5e-13  Score=148.12  Aligned_cols=302  Identities=17%  Similarity=0.185  Sum_probs=226.9

Q ss_pred             HHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCC-cchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChh-
Q 010533          175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV-  252 (508)
Q Consensus       175 vp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~-  252 (508)
                      +|-.+..|.+.   +..++.+|..-+..++-++ +-+..+.+-|||+.||.+|+  +...+|+..+|++|+|+.-+... 
T Consensus       235 lpe~i~mL~~q---~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~--~~~~evq~~acgaLRNLvf~~~~~  309 (717)
T KOG1048|consen  235 LPEVISMLMSQ---DPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLD--HRNDEVQRQACGALRNLVFGKSTD  309 (717)
T ss_pred             cHHHHHHHhcc---ChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhc--CCcHHHHHHHHHHHHhhhcccCCc
Confidence            67778888773   6778888777777777544 45678889999999999998  46899999999999999877666 


Q ss_pred             -hHHHHHHcCcHHHHHHHHhcC-ChHHHHHHHHHHHHhcCCCcchhh----------------hh---------------
Q 010533          253 -VKESYMELKIDELILEILSRQ-RNDSIQSLYDAIRVLLTPDDDQVV----------------AS---------------  299 (508)
Q Consensus       253 -nr~~i~~~G~i~~Lv~lL~~~-~~~~~~~A~~aL~~L~~~dd~r~~----------------~~---------------  299 (508)
                       ||-.|.+.++|+.++++|+.. +.++.++...+|.||+..|..+..                ++               
T Consensus       310 ~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~  389 (717)
T KOG1048|consen  310 SNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDST  389 (717)
T ss_pred             ccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccce
Confidence             999999999999999999974 558888999999999987644321                11               


Q ss_pred             -------------h-cchHHHHHHh-cCCHHHHHHHHhcC-----CChhHHHHHHHHHHHhhcChh------hHh-----
Q 010533          300 -------------Q-VYGYARRFAK-IGIARALVHSLHAG-----LSSPSLISASIALKAVAVNDE------ICK-----  348 (508)
Q Consensus       300 -------------~-a~~~~~~i~~-~g~i~~Lv~lL~~~-----~d~~~~~~a~~aL~~La~~~e------~~~-----  348 (508)
                                   . ..+--+++-+ .|.|+.|+..++..     .|...++++...|.||+-.-+      ..+     
T Consensus       390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~  469 (717)
T KOG1048|consen  390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI  469 (717)
T ss_pred             eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence                         1 2234455554 48999999998842     144456777777888864221      000     


Q ss_pred             ---------------------H--------------HhhcC--------CHHHHHHHHhccCCCCcHHHHHHHHHHHHHh
Q 010533          349 ---------------------S--------------VAENG--------GIDALLRCIDDSGLQGNKTVARICCSLLSKL  385 (508)
Q Consensus       349 ---------------------~--------------i~e~G--------gi~~Lv~lL~~~~~~~~~~v~~~al~aL~~L  385 (508)
                                           +              ....|        .|.+=+.+|....   +..+++.+.++|.||
T Consensus       470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~---n~~TlEasaGaLQNl  546 (717)
T KOG1048|consen  470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSK---NDNTLEASAGALQNL  546 (717)
T ss_pred             cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhc---chHHHHHhhhhHhhh
Confidence                                 0              00001        1233244555322   348999999999999


Q ss_pred             h-CC----chhHHHH-HhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCC--
Q 010533          386 A-GS----DSNKSAI-IENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPN--  457 (508)
Q Consensus       386 a-~~----~~~k~~I-v~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~--  457 (508)
                      + +.    ...+..| .+..|+|+|+++|+  .++..|.+.++++|.||+ +++.|+..|. .++++-|++.|..+..  
T Consensus       547 tA~~~~~~~~~~~~v~~kekgl~~l~~ll~--~~~~~vv~s~a~~LrNls-~d~rnk~lig-k~a~~~lv~~Lp~~~~~~  622 (717)
T KOG1048|consen  547 TAGLWTWSEYMRGAVFRKEKGLPPLVELLR--NDDSDVVRSAAGALRNLS-RDIRNKELIG-KYAIPDLVRCLPGSGPST  622 (717)
T ss_pred             hccCCcchhHHHhhhhhhccCccHHHHHHh--cCCchHHHHHHHHHhhhc-cCchhhhhhh-cchHHHHHHhCcCCCCCc
Confidence            6 32    2345555 77889999999999  889999999999999999 5898888877 8899999999965533  


Q ss_pred             --cHHHHHHHHHHHHHhhhcCccchHHHHhccc
Q 010533          458 --AQQLQRSSCFMIRNLVARNPENSFCSVMVSR  488 (508)
Q Consensus       458 --~~~vq~~A~~aL~nL~~~~~e~~~~~~~~g~  488 (508)
                        +.++...+|-.|.|++..|+++.+.+++.++
T Consensus       623 ~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g  655 (717)
T KOG1048|consen  623 SLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKG  655 (717)
T ss_pred             CchHHHHHHHHHhHHHHHHHhHHHHHHHHhccC
Confidence              2567788999999999889999999998875

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.60  E-value=6.9e-13  Score=133.59  Aligned_cols=341  Identities=15%  Similarity=0.195  Sum_probs=237.3

Q ss_pred             HHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccC----CCHHHHHHH
Q 010533          121 IQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRC----GSKRVLDSC  196 (508)
Q Consensus       121 ~~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~----~~~~~~~~a  196 (508)
                      .++++.|++...|.       |.+...+..+.|.+.|..  +.++|..+.+.|+-.+++++|+....    ...+...-+
T Consensus        86 a~~le~Lrq~psS~-------d~ev~~Q~~RaLgNiCyd--n~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~  156 (604)
T KOG4500|consen   86 AEALELLRQTPSSP-------DTEVHEQCFRALGNICYD--NNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVA  156 (604)
T ss_pred             HHHHHHHHhCCCCC-------cccHHHHHHHHHhhhhcc--CchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHH
Confidence            35677777776664       788888999999999997  99999999999998888888765422    234666666


Q ss_pred             HHHHHHhhcCC-cchhHHHhcCChHHHHHHHhcCCCCHHHHH--------------------------------------
Q 010533          197 LKTMALLVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILN--------------------------------------  237 (508)
Q Consensus       197 l~aLa~l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~--------------------------------------  237 (508)
                      ...|.+-..+. +-+..+.+.|.++.|+.++.-+..+.+..+                                      
T Consensus       157 ~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v  236 (604)
T KOG4500|consen  157 FGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMV  236 (604)
T ss_pred             HHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhh
Confidence            77777766554 335677788888888777655444333222                                      


Q ss_pred             ------HHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh--------HHHHHHHHHHHHhcCCCcchhhhhhcch
Q 010533          238 ------SGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN--------DSIQSLYDAIRVLLTPDDDQVVASQVYG  303 (508)
Q Consensus       238 ------~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~--------~~~~~A~~aL~~L~~~dd~r~~~~~a~~  303 (508)
                            -.+.++... ..++..|-.+.+.|.+..++++++...+        .....+|....-|..+|+.         
T Consensus       237 ~~d~~eM~feila~~-aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeS---------  306 (604)
T KOG4500|consen  237 REDIDEMIFEILAKA-AENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDES---------  306 (604)
T ss_pred             ccchhhHHHHHHHHH-hcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchH---------
Confidence                  222333333 2455566677888999999999987321        3344567777777777753         


Q ss_pred             HHHHHHhcC-CHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhc-cCCCCcHHHHHHHHHH
Q 010533          304 YARRFAKIG-IARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDD-SGLQGNKTVARICCSL  381 (508)
Q Consensus       304 ~~~~i~~~g-~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~-~~~~~~~~v~~~al~a  381 (508)
                       .+.+.+.+ .++-++.-+++ .|.+.+.....+++|++.++++|..+++.|-+..|+++|.. +...+|..++.++|++
T Consensus       307 -Mq~L~~~p~~l~~~~sw~~S-~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsA  384 (604)
T KOG4500|consen  307 -MQKLHADPQFLDFLESWFRS-DDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSA  384 (604)
T ss_pred             -HHHHhcCcHHHHHHHHHhcC-CchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHH
Confidence             23444433 56667666665 36778888999999999999999999999999999999875 5556678999999999


Q ss_pred             HHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcC---CCc
Q 010533          382 LSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKF---PNA  458 (508)
Q Consensus       382 L~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h---~~~  458 (508)
                      |+||+-.-.||..++.+|..+.++..++  ...|.++..-.++|+.+-...+...-++.   --+.+++-|..+   ++.
T Consensus       385 LRnl~IPv~nka~~~~aGvteaIL~~lk--~~~ppv~fkllgTlrM~~d~qe~~a~eL~---kn~~l~ekLv~Wsks~D~  459 (604)
T KOG4500|consen  385 LRNLMIPVSNKAHFAPAGVTEAILLQLK--LASPPVTFKLLGTLRMIRDSQEYIACELA---KNPELFEKLVDWSKSPDF  459 (604)
T ss_pred             HHhccccCCchhhccccchHHHHHHHHH--hcCCcchHHHHHHHHHHHhchHHHHHHHh---cCHHHHHHHHHhhhCCcc
Confidence            9999999999999999999999999999  55688889999999988754443333332   223333333222   333


Q ss_pred             HHHHHHHHHHHHHhhhc--CccchHHHHhcc
Q 010533          459 QQLQRSSCFMIRNLVAR--NPENSFCSVMVS  487 (508)
Q Consensus       459 ~~vq~~A~~aL~nL~~~--~~e~~~~~~~~g  487 (508)
                      ++|--+.-+.+.-+..+  ..+....+...|
T Consensus       460 aGv~gESnRll~~lIkHs~~kdv~~tvpksg  490 (604)
T KOG4500|consen  460 AGVAGESNRLLLGLIKHSKYKDVILTVPKSG  490 (604)
T ss_pred             chhhhhhhHHHHHHHHhhHhhhhHhhccccc
Confidence            34444444444444333  344555555555

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.53  E-value=1.5e-12  Score=131.24  Aligned_cols=309  Identities=14%  Similarity=0.106  Sum_probs=221.4

Q ss_pred             hhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCC-cchhHHHhcCChHHHHHHHhcCC-----CCHHHHH
Q 010533          164 VNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDV-QSTETFRTGGGPKLLVNILIDGN-----EDPEILN  237 (508)
Q Consensus       164 ~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~-----~~~~v~~  237 (508)
                      .++..-+.+|++..|.+..++   +|.++..++..+|.+++-++ ++|..|.+.||-+.++++|+.+.     .+.+...
T Consensus        78 ~F~~~~I~a~~le~Lrq~psS---~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~  154 (604)
T KOG4500|consen   78 LFRNYCIDAEALELLRQTPSS---PDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSA  154 (604)
T ss_pred             HHHHHhhHHHHHHHHHhCCCC---CcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHH
Confidence            344444556777777777666   47888888899999888654 78999999999999999998653     3456778


Q ss_pred             HHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-HHHHH-HHHHHHHhcCCCcchhhhhhcchHHHHH-HhcCCH
Q 010533          238 SGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQS-LYDAIRVLLTPDDDQVVASQVYGYARRF-AKIGIA  314 (508)
Q Consensus       238 ~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~~-A~~aL~~L~~~dd~r~~~~~a~~~~~~i-~~~g~i  314 (508)
                      .++.+|.|...+++..+...++.|+++.|..++--+-. ..+.+ .....++|..-         ..++...+ .+....
T Consensus       155 v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~---------~~e~~~~~~~d~sl~  225 (604)
T KOG4500|consen  155 VAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSF---------VCEMLYPFCKDCSLV  225 (604)
T ss_pred             HHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHH---------HHHhhhhhhccchHH
Confidence            88899999888999999999999999999988865422 12211 11122222200         00111112 244567


Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCc----HHHHHHHHHHHHHhhCCch
Q 010533          315 RALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGN----KTVARICCSLLSKLAGSDS  390 (508)
Q Consensus       315 ~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~----~~v~~~al~aL~~La~~~~  390 (508)
                      ..+++++.+...++..+-....|...+.+++.|-.+++.|-+..++++++...+..+    -.+.+.++....-|...|+
T Consensus       226 ~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDe  305 (604)
T KOG4500|consen  226 FMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDE  305 (604)
T ss_pred             HHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCch
Confidence            778888887655555555556678889999999999999999999999986333221    2333455555555555555


Q ss_pred             hHHHHHhCC-cHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHc-C--CCcHHHHHHHH
Q 010533          391 NKSAIIENG-GMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLK-F--PNAQQLQRSSC  466 (508)
Q Consensus       391 ~k~~Iv~~G-gl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~-h--~~~~~vq~~A~  466 (508)
                      --+.+-..+ .+..+++.+.  +++...+-.+..+|.|++ |+++++..+++.|.+.-|++++.+ |  .++..+|..+|
T Consensus       306 SMq~L~~~p~~l~~~~sw~~--S~d~~l~t~g~LaigNfa-R~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~l  382 (604)
T KOG4500|consen  306 SMQKLHADPQFLDFLESWFR--SDDSNLITMGSLAIGNFA-RRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACL  382 (604)
T ss_pred             HHHHHhcCcHHHHHHHHHhc--CCchhHHHHHHHHHHhhh-ccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHH
Confidence            555565555 5788888887  788899999999999999 688999999999999999998755 3  23456777899


Q ss_pred             HHHHHhhhcCccchHHHHhccc
Q 010533          467 FMIRNLVARNPENSFCSVMVSR  488 (508)
Q Consensus       467 ~aL~nL~~~~~e~~~~~~~~g~  488 (508)
                      .||||++-- ..++..|+.+|-
T Consensus       383 sALRnl~IP-v~nka~~~~aGv  403 (604)
T KOG4500|consen  383 SALRNLMIP-VSNKAHFAPAGV  403 (604)
T ss_pred             HHHHhcccc-CCchhhccccch
Confidence            999999863 446777777763

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.44  E-value=5.8e-12  Score=141.02  Aligned_cols=225  Identities=18%  Similarity=0.161  Sum_probs=179.0

Q ss_pred             cCChhhHHHHHHcCcHHHHHHHHhcC----C----h----HHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHH-hcCCH
Q 010533          248 TGNEVVKESYMELKIDELILEILSRQ----R----N----DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-KIGIA  314 (508)
Q Consensus       248 ~~~e~nr~~i~~~G~i~~Lv~lL~~~----~----~----~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~-~~g~i  314 (508)
                      +.+|+.|...-+.|++..|-++|...    .    +    .+.+.|..+|.||+++|..         +...+. .-|.+
T Consensus       326 SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~---------NKa~LCs~rgfM  396 (2195)
T KOG2122|consen  326 SFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVA---------NKATLCSQRGFM  396 (2195)
T ss_pred             hccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccccccc---------chhhhhhhhhHH
Confidence            46788999999999999998888641    1    1    5677899999999998853         223333 56999


Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHhhcC-hhh-HhHHhhcCCHHHHHHH-HhccCCCCcHHHHHHHHHHHHHhhC-Cch
Q 010533          315 RALVHSLHAGLSSPSLISASIALKAVAVN-DEI-CKSVAENGGIDALLRC-IDDSGLQGNKTVARICCSLLSKLAG-SDS  390 (508)
Q Consensus       315 ~~Lv~lL~~~~d~~~~~~a~~aL~~La~~-~e~-~~~i~e~Ggi~~Lv~l-L~~~~~~~~~~v~~~al~aL~~La~-~~~  390 (508)
                      +.||..|.+.+ .+++.-.+..|+||+.+ |.+ ++.+-+.|-|..|..+ |....+    ..++..+.+||||+. +.+
T Consensus       397 eavVAQL~s~p-eeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kE----sTLKavLSALWNLSAHcte  471 (2195)
T KOG2122|consen  397 EAVVAQLISAP-EELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKE----STLKAVLSALWNLSAHCTE  471 (2195)
T ss_pred             HHHHHHHhcCh-HHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhccc----chHHHHHHHHhhhhhcccc
Confidence            99999998753 46778888999999984 334 5566788999988877 444322    578999999999986 569


Q ss_pred             hHHHHHhC-CcHHHHHHHHhcc--CCCHHHHHHHHHHHHHHh---cCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHH
Q 010533          391 NKSAIIEN-GGMDKLIVVSARF--SDDASVLQEVMSIITVLS---LRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRS  464 (508)
Q Consensus       391 ~k~~Iv~~-Ggl~~Lv~lL~~~--~~~~~v~e~a~~aL~~La---~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~  464 (508)
                      ||..|..- |++..||.+|.--  +..-.|.|.|-++|.|.+   ....++++.+.+...+..|++.|+.|+  -.|.-+
T Consensus       472 NKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~S--LTiVSN  549 (2195)
T KOG2122|consen  472 NKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHS--LTIVSN  549 (2195)
T ss_pred             cchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcc--eEEeec
Confidence            99999875 5689999999722  223568999999999854   246778899999999999999999885  467789


Q ss_pred             HHHHHHHhhhcCccchHHHHhccc
Q 010533          465 SCFMIRNLVARNPENSFCSVMVSR  488 (508)
Q Consensus       465 A~~aL~nL~~~~~e~~~~~~~~g~  488 (508)
                      +|-.|+||.+|+|+..+.+.+.|+
T Consensus       550 aCGTLWNLSAR~p~DQq~LwD~gA  573 (2195)
T KOG2122|consen  550 ACGTLWNLSARSPEDQQMLWDDGA  573 (2195)
T ss_pred             chhhhhhhhcCCHHHHHHHHhccc
Confidence            999999999999999999999885

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.41  E-value=3.5e-11  Score=118.04  Aligned_cols=198  Identities=14%  Similarity=0.162  Sum_probs=166.0

Q ss_pred             hHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcC
Q 010533          211 ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLT  290 (508)
Q Consensus       211 ~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~  290 (508)
                      ..+.+++..+.|+.+|+. ..++.+++.++.++++.+ ..+.++..|.+.|+++.+..+|..++..+...|.++|.||+.
T Consensus         6 ~~~l~~~~l~~Ll~lL~~-t~dp~i~e~al~al~n~a-af~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~   83 (254)
T PF04826_consen    6 KNILEAQELQKLLCLLES-TEDPFIQEKALIALGNSA-AFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSV   83 (254)
T ss_pred             cCCcCHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhc-cChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCC
Confidence            345677788899999985 468999999999999984 567899999999999999999999888888889999999998


Q ss_pred             CCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCC-ChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCC
Q 010533          291 PDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQ  369 (508)
Q Consensus       291 ~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~-d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~  369 (508)
                      +++++          ..| + -.++.+++.+.+++ +..++..+..+|.+|++.+++...+..  .++.++.+|..+.  
T Consensus        84 ~~en~----------~~I-k-~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~--  147 (254)
T PF04826_consen   84 NDENQ----------EQI-K-MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGS--  147 (254)
T ss_pred             ChhhH----------HHH-H-HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCC--
Confidence            77653          233 2 25777777766654 677888999999999999888777754  7999999998752  


Q ss_pred             CcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010533          370 GNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS  429 (508)
Q Consensus       370 ~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La  429 (508)
                        ..++..++.+|.+||.++++...++.++++..++.++.+. .+..+...++....||.
T Consensus       148 --~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~-~~~~~l~~~l~~~~ni~  204 (254)
T PF04826_consen  148 --EKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSS-ESKENLLRVLTFFENIN  204 (254)
T ss_pred             --hHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccC-CccHHHHHHHHHHHHHH
Confidence              2788999999999999999999999999999999999843 35678889999999996

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.36  E-value=2.3e-11  Score=104.65  Aligned_cols=118  Identities=24%  Similarity=0.390  Sum_probs=105.5

Q ss_pred             HHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC-chhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 010533          349 SVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGS-DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITV  427 (508)
Q Consensus       349 ~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~-~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~  427 (508)
                      .+++.|+++.|+++|.+.    +.+++..++.+|++++.. ++.+..+++.|+++.++.+|.  .+++.+++.++++|.+
T Consensus         2 ~~~~~~~i~~l~~~l~~~----~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~--~~~~~v~~~a~~~L~~   75 (120)
T cd00020           2 AVIQAGGLPALVSLLSSS----DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK--SEDEEVVKAALWALRN   75 (120)
T ss_pred             hHHHcCChHHHHHHHHcC----CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence            467899999999999864    248999999999999875 889999999999999999998  5689999999999999


Q ss_pred             HhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhh
Q 010533          428 LSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA  474 (508)
Q Consensus       428 La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~  474 (508)
                      |+...+.....+...|+++.+++.|..  .+..+++.++|+|+||+.
T Consensus        76 l~~~~~~~~~~~~~~g~l~~l~~~l~~--~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          76 LAAGPEDNKLIVLEAGGVPKLVNLLDS--SNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HccCcHHHHHHHHHCCChHHHHHHHhc--CCHHHHHHHHHHHHHhhC
Confidence            998777888889999999999999964  368899999999999863

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.33  E-value=4.3e-09  Score=113.87  Aligned_cols=348  Identities=13%  Similarity=0.086  Sum_probs=236.4

Q ss_pred             HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHH
Q 010533          122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA  201 (508)
Q Consensus       122 ~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa  201 (508)
                      .....|...+.+.       +.....-+++.|++....  +..-...+.+.+.+|.++.+|..   ++.++...|..+|.
T Consensus        77 ~~~~~L~~gL~h~-------~~~Vr~l~l~~l~~~~~~--~~~~~~~~~~~~l~~~i~~~L~~---~d~~Va~~A~~~L~  144 (503)
T PF10508_consen   77 QYQPFLQRGLTHP-------SPKVRRLALKQLGRIARH--SEGAAQLLVDNELLPLIIQCLRD---PDLSVAKAAIKALK  144 (503)
T ss_pred             HHHHHHHHHhcCC-------CHHHHHHHHHHHHHHhcC--CHHHHHHhcCccHHHHHHHHHcC---CcHHHHHHHHHHHH
Confidence            3444455555543       666666778888888775  56666788889999999999987   47899999999999


Q ss_pred             HhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHH
Q 010533          202 LLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSL  281 (508)
Q Consensus       202 ~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A  281 (508)
                      .++...+....+++.+++..|..++..  ++..++..++.++.+++..+++..+.+.+.|.++.++.-|.+.+.-++.++
T Consensus       145 ~l~~~~~~~~~l~~~~~~~~L~~l~~~--~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlna  222 (503)
T PF10508_consen  145 KLASHPEGLEQLFDSNLLSKLKSLMSQ--SSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNA  222 (503)
T ss_pred             HHhCCchhHHHHhCcchHHHHHHHHhc--cCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHH
Confidence            998766555667788889999999974  367788889999999999999999999999999999999998444677889


Q ss_pred             HHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCC-Ch---hH-HHHHHHHHHHhhcChhhHhHHhhcCCH
Q 010533          282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SS---PS-LISASIALKAVAVNDEICKSVAENGGI  356 (508)
Q Consensus       282 ~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~-d~---~~-~~~a~~aL~~La~~~e~~~~i~e~Ggi  356 (508)
                      +..|..|+..+          ...+.+.+.|+++.|++++.... |+   .+ +.......++++.....  .+.  ++.
T Consensus       223 lell~~La~~~----------~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~--~v~--~~~  288 (503)
T PF10508_consen  223 LELLSELAETP----------HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQ--EVL--ELY  288 (503)
T ss_pred             HHHHHHHHcCh----------hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChH--HHH--HHH
Confidence            99999998633          23567788999999999998754 33   11 12222345666663211  111  234


Q ss_pred             HHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHH-HhCC-cHHHHHHHHhcc--CCCHHHHHHHHHHHHHHhcCC
Q 010533          357 DALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAI-IENG-GMDKLIVVSARF--SDDASVLQEVMSIITVLSLRS  432 (508)
Q Consensus       357 ~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~I-v~~G-gl~~Lv~lL~~~--~~~~~v~e~a~~aL~~La~~~  432 (508)
                      |.++..+.+..+..+......|+.+|+.++.+.+++..+ ...| .++..+.....+  +....++..+.-+|+++-...
T Consensus       289 p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~  368 (503)
T PF10508_consen  289 PAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSG  368 (503)
T ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcC
Confidence            555544443223335588899999999999999999998 5544 456666655433  344679999999999983211


Q ss_pred             hh--------hHHHHHhc-Cc--HH-HHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHhccc---cccHHHHhh
Q 010533          433 PE--------NAARAMEA-GS--GD-LAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMVSR---NLSDRQRRT  497 (508)
Q Consensus       433 ~~--------~~~~i~~~-G~--i~-~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~g~---~~~~~~~~~  497 (508)
                      ++        ....+.+. |.  .. .++.++++ | =++++-.+-..|..++.+ |--.+.+...++   -+.+|...+
T Consensus       369 ~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~q-P-F~elr~a~~~~l~~l~~~-~Wg~~~i~~~~gfie~lldr~~E~  445 (503)
T PF10508_consen  369 TDRQDNDILSITESWYESLSGSPLSNLLMSLLKQ-P-FPELRCAAYRLLQALAAQ-PWGQREICSSPGFIEYLLDRSTET  445 (503)
T ss_pred             CCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcC-C-chHHHHHHHHHHHHHhcC-HHHHHHHHhCccHHhhhcCCCCCC
Confidence            11        12222221 22  23 45555543 1 257777777777777654 333344444433   344455555


Q ss_pred             hhh
Q 010533          498 TKS  500 (508)
Q Consensus       498 ~~~  500 (508)
                      +|+
T Consensus       446 ~K~  448 (503)
T PF10508_consen  446 TKE  448 (503)
T ss_pred             CHH
Confidence            444

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.23  E-value=1.2e-09  Score=107.32  Aligned_cols=195  Identities=15%  Similarity=0.092  Sum_probs=156.7

Q ss_pred             HHcCcHHHHHHHHhcCC-hHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHH-hcCCHHHHHHHHhcCCChhHHHHHHH
Q 010533          258 MELKIDELILEILSRQR-NDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-KIGIARALVHSLHAGLSSPSLISASI  335 (508)
Q Consensus       258 ~~~G~i~~Lv~lL~~~~-~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~-~~g~i~~Lv~lL~~~~d~~~~~~a~~  335 (508)
                      .+.+-++.|+.+|+... +.+++.+..++.+.+...           ..+.+. +.|+++.+..+|.+ +++.+...+.+
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-----------~nq~~Ir~~Ggi~lI~~lL~~-p~~~vr~~AL~   76 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-----------FNQDIIRDLGGISLIGSLLND-PNPSVREKALN   76 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-----------hHHHHHHHcCCHHHHHHHcCC-CChHHHHHHHH
Confidence            55677899999999754 467788889999876533           234444 88999999999987 47889999999


Q ss_pred             HHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCH
Q 010533          336 ALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDA  415 (508)
Q Consensus       336 aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~  415 (508)
                      +|.||+.+.++...|-.  .++.+++.+..++-  +.+++..++++|.+|+-.++....+.  +.++.++.+|.  .++.
T Consensus        77 aL~Nls~~~en~~~Ik~--~i~~Vc~~~~s~~l--ns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~--~G~~  148 (254)
T PF04826_consen   77 ALNNLSVNDENQEQIKM--YIPQVCEETVSSPL--NSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLS--SGSE  148 (254)
T ss_pred             HHHhcCCChhhHHHHHH--HHHHHHHHHhcCCC--CCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHH--cCCh
Confidence            99999999999887754  36666665544332  23899999999999998777777665  47999999999  7788


Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhh
Q 010533          416 SVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA  474 (508)
Q Consensus       416 ~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~  474 (508)
                      .++.+++.+|.||+. +|++.+.++.+++...++.++..... ..+-..+.+...|+..
T Consensus       149 ~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~~~~~Lf~~~~~-~~~l~~~l~~~~ni~~  205 (254)
T PF04826_consen  149 KTKVQVLKVLVNLSE-NPDMTRELLSAQVLSSFLSLFNSSES-KENLLRVLTFFENINE  205 (254)
T ss_pred             HHHHHHHHHHHHhcc-CHHHHHHHHhccchhHHHHHHccCCc-cHHHHHHHHHHHHHHH
Confidence            999999999999995 99999999999999999999976543 4555677777788854

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.23  E-value=2.6e-10  Score=97.97  Aligned_cols=115  Identities=23%  Similarity=0.356  Sum_probs=102.3

Q ss_pred             HHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcC-hhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh
Q 010533          308 FAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA  386 (508)
Q Consensus       308 i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~-~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La  386 (508)
                      +++.|+++.|+++|.+. +..++..++++|++++.+ ++.+..+++.|+++.++++|.+.    +..++..++++|++|+
T Consensus         3 ~~~~~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~----~~~v~~~a~~~L~~l~   77 (120)
T cd00020           3 VIQAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE----DEEVVKAALWALRNLA   77 (120)
T ss_pred             HHHcCChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC----CHHHHHHHHHHHHHHc
Confidence            56789999999999875 577999999999999986 78889999999999999999863    3489999999999999


Q ss_pred             CCc-hhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010533          387 GSD-SNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS  429 (508)
Q Consensus       387 ~~~-~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La  429 (508)
                      .++ .....+++.|+++.|+++|.  ..+..+++.++++|.+||
T Consensus        78 ~~~~~~~~~~~~~g~l~~l~~~l~--~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          78 AGPEDNKLIVLEAGGVPKLVNLLD--SSNEDIQKNATGALSNLA  119 (120)
T ss_pred             cCcHHHHHHHHHCCChHHHHHHHh--cCCHHHHHHHHHHHHHhh
Confidence            755 66777889999999999998  557899999999999997

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.15  E-value=4.6e-08  Score=105.90  Aligned_cols=305  Identities=11%  Similarity=0.103  Sum_probs=215.7

Q ss_pred             hHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcc-hhHHHhcCChH
Q 010533          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPK  220 (508)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~-~~~i~~~ggi~  220 (508)
                      +.+.+.-+...|..+.+.  . .....  ..+..+.|...|.+   +++.++..+++.|..+...... ...+.+.+.++
T Consensus        51 ~~e~v~~~~~iL~~~l~~--~-~~~~l--~~~~~~~L~~gL~h---~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~  122 (503)
T PF10508_consen   51 NREQVELICDILKRLLSA--L-SPDSL--LPQYQPFLQRGLTH---PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP  122 (503)
T ss_pred             ChHHHHHHHHHHHHHHhc--c-CHHHH--HHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence            566666666677776654  1 11112  56678888888887   4778999999999888765533 24456678899


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhh
Q 010533          221 LLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQ  300 (508)
Q Consensus       221 ~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~  300 (508)
                      .++.+|.  .++.++...|..+|..++. ++..-+.+...+.+..|..++...++.++-.+..++..++...        
T Consensus       123 ~i~~~L~--~~d~~Va~~A~~~L~~l~~-~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S--------  191 (503)
T PF10508_consen  123 LIIQCLR--DPDLSVAKAAIKALKKLAS-HPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHS--------  191 (503)
T ss_pred             HHHHHHc--CCcHHHHHHHHHHHHHHhC-CchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcC--------
Confidence            9999996  4689999999999999975 5556667778888999999998855555555777787776433        


Q ss_pred             cchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCC-cHHHH-HHH
Q 010533          301 VYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQG-NKTVA-RIC  378 (508)
Q Consensus       301 a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~-~~~v~-~~a  378 (508)
                       .+....+.+.|.++.++..|++ .|.=++.+++..|..|+..+...+.+.+.|+++.|.+++.+..+++ ...+. -..
T Consensus       192 -~~~~~~~~~sgll~~ll~eL~~-dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~  269 (503)
T PF10508_consen  192 -PEAAEAVVNSGLLDLLLKELDS-DDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGR  269 (503)
T ss_pred             -HHHHHHHHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhH
Confidence             3455566688999999999987 5666778999999999999999999999999999999998754433 11222 333


Q ss_pred             HHHHHHhhCCchhHHHHHhCCcHHHH----HHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHH-HhcC-cHHHHHHHH
Q 010533          379 CSLLSKLAGSDSNKSAIIENGGMDKL----IVVSARFSDDASVLQEVMSIITVLSLRSPENAARA-MEAG-SGDLAIQAM  452 (508)
Q Consensus       379 l~aL~~La~~~~~k~~Iv~~Ggl~~L----v~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i-~~~G-~i~~Lv~~L  452 (508)
                      +...++++..+...  +.  +..|.+    .+.+.  +.++..+..|.-+|..|+. +++-...+ ...| .+..+++..
T Consensus       270 ~~f~g~la~~~~~~--v~--~~~p~~~~~l~~~~~--s~d~~~~~~A~dtlg~igs-t~~G~~~L~~~~~~~~~~~l~~~  342 (503)
T PF10508_consen  270 MKFFGNLARVSPQE--VL--ELYPAFLERLFSMLE--SQDPTIREVAFDTLGQIGS-TVEGKQLLLQKQGPAMKHVLKAI  342 (503)
T ss_pred             HHHHHHHHhcChHH--HH--HHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHHhC-CHHHHHHHHhhcchHHHHHHHHH
Confidence            46667776532111  11  233444    44454  6789999999999999995 77777777 3333 344555544


Q ss_pred             HcC--CCcHHHHHHHHHHHHHhhh
Q 010533          453 LKF--PNAQQLQRSSCFMIRNLVA  474 (508)
Q Consensus       453 ~~h--~~~~~vq~~A~~aL~nL~~  474 (508)
                      -.+  +...+++..+.-++.++..
T Consensus       343 ~~~~~~~~~~lk~r~l~al~~il~  366 (503)
T PF10508_consen  343 GDAIKSGSTELKLRALHALASILT  366 (503)
T ss_pred             HHHhcCCchHHHHHHHHHHHHHHh
Confidence            222  2234577778888888854

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.14  E-value=2.5e-09  Score=108.94  Aligned_cols=230  Identities=17%  Similarity=0.143  Sum_probs=161.5

Q ss_pred             cHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhc-------CChHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 010533          174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTG-------GGPKLLVNILIDGNEDPEILNSGFAVVAAS  246 (508)
Q Consensus       174 avp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~-------ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l  246 (508)
                      .+..++++|+.. ..+.++....+..+.-++.+.+.+..++..       .-..+++++|.+  +|.-++..++.+|..+
T Consensus        56 ~~~~~l~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~--~D~~i~~~a~~iLt~L  132 (312)
T PF03224_consen   56 YASLFLNLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDR--NDSFIQLKAAFILTSL  132 (312)
T ss_dssp             ------HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S---SSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcC--CCHHHHHHHHHHHHHH
Confidence            467788888765 236788888999999998877666444321       245778887764  4899999999999998


Q ss_pred             hcCChhhHHHHHHcCcHHHHHHHHhcCCh----HHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHH-
Q 010533          247 ATGNEVVKESYMELKIDELILEILSRQRN----DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSL-  321 (508)
Q Consensus       247 ~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~----~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL-  321 (508)
                      ....+....... .+.++.++..|++...    +.+..+..+|.+|...+.          +...+.+.|+++.|+.+| 
T Consensus       133 l~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~----------~R~~f~~~~~v~~l~~iL~  201 (312)
T PF03224_consen  133 LSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKE----------YRQVFWKSNGVSPLFDILR  201 (312)
T ss_dssp             HTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHH----------HHHHHHTHHHHHHHHHHHH
T ss_pred             HHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcch----------hHHHHHhcCcHHHHHHHHH
Confidence            776554333322 4677888888886322    556778888999986554          344566889999999999 


Q ss_pred             -----hcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCch--hHHH
Q 010533          322 -----HAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDS--NKSA  394 (508)
Q Consensus       322 -----~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~--~k~~  394 (508)
                           .+..+..++..++.++|-|+.+++....+...+.|+.|+++++....+   .|.+-++.+|+||...+.  +...
T Consensus       202 ~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KE---KvvRv~la~l~Nl~~~~~~~~~~~  278 (312)
T PF03224_consen  202 KQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKE---KVVRVSLAILRNLLSKAPKSNIEL  278 (312)
T ss_dssp             ---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SH---HHHHHHHHHHHHTTSSSSTTHHHH
T ss_pred             hhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccc---hHHHHHHHHHHHHHhccHHHHHHH
Confidence                 222246788999999999999999999999999999999999986543   899999999999987554  8999


Q ss_pred             HHhCCcHHHHHHHHhccCCCHHHHHH
Q 010533          395 IIENGGMDKLIVVSARFSDDASVLQE  420 (508)
Q Consensus       395 Iv~~Ggl~~Lv~lL~~~~~~~~v~e~  420 (508)
                      ++..|+++.+-.+..++-+|+++.+.
T Consensus       279 mv~~~~l~~l~~L~~rk~~Dedl~ed  304 (312)
T PF03224_consen  279 MVLCGLLKTLQNLSERKWSDEDLTED  304 (312)
T ss_dssp             HHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred             HHHccHHHHHHHHhcCCCCCHHHHHH
Confidence            99988888888888777788888765

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.13  E-value=4.2e-08  Score=102.57  Aligned_cols=285  Identities=14%  Similarity=0.145  Sum_probs=198.2

Q ss_pred             CcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcch-hHHHhc-----CChHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 010533          173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST-ETFRTG-----GGPKLLVNILIDGNEDPEILNSGFAVVAAS  246 (508)
Q Consensus       173 Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~-~~i~~~-----ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l  246 (508)
                      ..+..++.+|+..  ...++....+.-+.-++.+.+++ ..|.+.     .-..+++.+|.  .++.-++..++.+|..+
T Consensus        53 ~y~~~~l~ll~~~--~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~--~~d~~i~~~a~~iLt~l  128 (429)
T cd00256          53 QYVKTFVNLLSQI--DKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLN--RQDQFIVHMSFSILAKL  128 (429)
T ss_pred             HHHHHHHHHHhcc--CcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHc--CCchhHHHHHHHHHHHH
Confidence            4577888888875  45677888888888888777655 344443     34677888886  35788999999999887


Q ss_pred             hcCChhhHHHHHHcCcHHHHHHHHhcCC-hHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCC
Q 010533          247 ATGNEVVKESYMELKIDELILEILSRQR-NDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL  325 (508)
Q Consensus       247 ~~~~e~nr~~i~~~G~i~~Lv~lL~~~~-~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~  325 (508)
                      ......+-......-...-|...|++.. ...+.-+...|..|...+..|          ..+.+.+++++|+.+|+...
T Consensus       129 ~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R----------~~f~~~~~v~~L~~~L~~~~  198 (429)
T cd00256         129 ACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYR----------FAFVLADGVPTLVKLLSNAT  198 (429)
T ss_pred             HhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHH----------HHHHHccCHHHHHHHHhhcc
Confidence            6433221111000012334556666543 355555667788888766544          34567789999999998755


Q ss_pred             -ChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCc-------hhHHHHHh
Q 010533          326 -SSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSD-------SNKSAIIE  397 (508)
Q Consensus       326 -d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~-------~~k~~Iv~  397 (508)
                       +..++..++.++|-|+.+++......+.|.|+.|+++++....+   .|.+-++.+|+||...+       .....++.
T Consensus       199 ~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KE---KvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~  275 (429)
T cd00256         199 LGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKE---KVIRIVLAIFRNLISKRVDREVKKTAALQMVQ  275 (429)
T ss_pred             ccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhH---HHHHHHHHHHHHHhhcccccchhhhHHHHHHH
Confidence             45788999999999999988888888889999999999986543   89999999999997532       34456777


Q ss_pred             CCcHHHHHHHHhccCCCHHHHHH---------------------------------------------------------
Q 010533          398 NGGMDKLIVVSARFSDDASVLQE---------------------------------------------------------  420 (508)
Q Consensus       398 ~Ggl~~Lv~lL~~~~~~~~v~e~---------------------------------------------------------  420 (508)
                      .|.++.+-.+..++-+|+.+.+.                                                         
T Consensus       276 ~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~ll  355 (429)
T cd00256         276 CKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELL  355 (429)
T ss_pred             cChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHH
Confidence            66655554454444444322211                                                         


Q ss_pred             ------------------HHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcC
Q 010533          421 ------------------VMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARN  476 (508)
Q Consensus       421 ------------------a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~  476 (508)
                                        ||-=|..++...|.-+..+-..|+=..++++|. |+ ++.|+.+|..++.-|..++
T Consensus       356 k~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~-h~-d~~Vr~eAL~avQklm~~~  427 (429)
T cd00256         356 KILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLN-HE-DPNVRYEALLAVQKLMVHN  427 (429)
T ss_pred             HHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhc-CC-CHHHHHHHHHHHHHHHHhc
Confidence                              444455555556666777777888888999995 64 6899999999988876543

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.04  E-value=1.7e-07  Score=96.30  Aligned_cols=318  Identities=11%  Similarity=0.113  Sum_probs=214.9

Q ss_pred             HHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHH
Q 010533          145 EMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVN  224 (508)
Q Consensus       145 ~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~  224 (508)
                      .++-|+.-|.+++.   +..--......+.|..||..|...   +.+++.....-|--|.--.+++....+.|.++.|++
T Consensus       279 LLrva~ylLlNlAe---d~~~ElKMrrkniV~mLVKaLdr~---n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~k  352 (791)
T KOG1222|consen  279 LLRVAVYLLLNLAE---DISVELKMRRKNIVAMLVKALDRS---NSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLK  352 (791)
T ss_pred             HHHHHHHHHHHHhh---hhhHHHHHHHHhHHHHHHHHHccc---chHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHH
Confidence            34456666666665   333334566778899999999874   456665555555444433455677778899999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchH
Q 010533          225 ILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGY  304 (508)
Q Consensus       225 lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~  304 (508)
                      +.-  ..++++...++..|-+++ -+..+|...+..|.+|.|..+|.+...  ..-|...|..|+.+|+.+.        
T Consensus       353 lfp--~~h~dL~~~tl~LlfNlS-FD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~--------  419 (791)
T KOG1222|consen  353 LFP--IQHPDLRKATLMLLFNLS-FDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKA--------  419 (791)
T ss_pred             hcC--CCCHHHHHHHHHHhhhcc-ccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHH--------
Confidence            985  568999999999999984 556688899999999999999987532  2335667888998886543        


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHH------------HHHhccCCCC--
Q 010533          305 ARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALL------------RCIDDSGLQG--  370 (508)
Q Consensus       305 ~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv------------~lL~~~~~~~--  370 (508)
                        +++-..+|+.++..+-.+++..+-.++...--||+.+..|.+-+++-.|++.|+            ++++.-..++  
T Consensus       420 --MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~  497 (791)
T KOG1222|consen  420 --MFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGA  497 (791)
T ss_pred             --HHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccch
Confidence              344567899999888777755443333333347787777777777766766544            2222111111  


Q ss_pred             --------------------cHHHHHHHHHHHHHhhCCchhHHHHH-hCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010533          371 --------------------NKTVARICCSLLSKLAGSDSNKSAII-ENGGMDKLIVVSARFSDDASVLQEVMSIITVLS  429 (508)
Q Consensus       371 --------------------~~~v~~~al~aL~~La~~~~~k~~Iv-~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La  429 (508)
                                          +....-+|++.|++|+-.|--...|+ +..-+|.+-.-|........++-..+-++..++
T Consensus       498 tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a  577 (791)
T KOG1222|consen  498 TQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMA  577 (791)
T ss_pred             HHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhh
Confidence                                23455688999999987776666665 556789888888865555677777777888787


Q ss_pred             cCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHh
Q 010533          430 LRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVM  485 (508)
Q Consensus       430 ~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~  485 (508)
                       ++..++.-+..+|.++.++++|+..-.+.+..-+-.....-+..+ ...|..++.
T Consensus       578 -~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~H-e~tr~~mik  631 (791)
T KOG1222|consen  578 -RDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKH-ELTRRLMIK  631 (791)
T ss_pred             -hhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence             577777778888999999999987655444433444444444333 334444443

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.97  E-value=6.7e-08  Score=98.40  Aligned_cols=243  Identities=13%  Similarity=0.075  Sum_probs=165.7

Q ss_pred             hHHHhcC---ChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHc------CcHHHHHHHHhcCChHHHHHH
Q 010533          211 ETFRTGG---GPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMEL------KIDELILEILSRQRNDSIQSL  281 (508)
Q Consensus       211 ~~i~~~g---gi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~------G~i~~Lv~lL~~~~~~~~~~A  281 (508)
                      ..+++..   ....++.+|..-..+.++....+..+..++..++...+.+.+.      ....+++.++.+++.-+...+
T Consensus        46 ~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a  125 (312)
T PF03224_consen   46 RELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKA  125 (312)
T ss_dssp             ----------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHH
T ss_pred             HHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHH
Confidence            3455433   3677888887644678999999999999988887666666542      257888888887765667778


Q ss_pred             HHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCC---hhHHHHHHHHHHHhhcChhhHhHHhhcCCHHH
Q 010533          282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLS---SPSLISASIALKAVAVNDEICKSVAENGGIDA  358 (508)
Q Consensus       282 ~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d---~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~  358 (508)
                      +..|..|...++.+..         .. ..+.++.+++.|++...   .+.+.-+..+|.+|...++++..+.+.||++.
T Consensus       126 ~~iLt~Ll~~~~~~~~---------~~-~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~  195 (312)
T PF03224_consen  126 AFILTSLLSQGPKRSE---------KL-VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSP  195 (312)
T ss_dssp             HHHHHHHHTSTTT--H---------HH-HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHcCCcccc---------ch-HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHH
Confidence            8888888765543221         10 13567888888887432   34567788899999999999999999999999


Q ss_pred             HHHHHhc---cCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChh-
Q 010533          359 LLRCIDD---SGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPE-  434 (508)
Q Consensus       359 Lv~lL~~---~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~-  434 (508)
                      +..+|..   .....+..++=+++.+|+-|+.+++....+.+.+.++.|+++++.. ..+.|.+-++++|.||....++ 
T Consensus       196 l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~-~KEKvvRv~la~l~Nl~~~~~~~  274 (312)
T PF03224_consen  196 LFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDS-IKEKVVRVSLAILRNLLSKAPKS  274 (312)
T ss_dssp             HHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH---SHHHHHHHHHHHHHTTSSSSTT
T ss_pred             HHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhc-ccchHHHHHHHHHHHHHhccHHH
Confidence            9999921   1112345788899999999999999999999999999999999853 4689999999999999976554 


Q ss_pred             hHHHHHhcCcHHHHHHHHHcCCCcHHHHHH
Q 010533          435 NAARAMEAGSGDLAIQAMLKFPNAQQLQRS  464 (508)
Q Consensus       435 ~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~  464 (508)
                      +...++..|+.+.+-.+..++-+|+++...
T Consensus       275 ~~~~mv~~~~l~~l~~L~~rk~~Dedl~ed  304 (312)
T PF03224_consen  275 NIELMVLCGLLKTLQNLSERKWSDEDLTED  304 (312)
T ss_dssp             HHHHHHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred             HHHHHHHccHHHHHHHHhcCCCCCHHHHHH
Confidence            888999998888887777666667776543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.90  E-value=2e-06  Score=88.59  Aligned_cols=313  Identities=12%  Similarity=0.055  Sum_probs=214.3

Q ss_pred             ChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHH
Q 010533          162 GSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFA  241 (508)
Q Consensus       162 ~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~  241 (508)
                      -.+|+....+.|.|..|+.+...   .+++++...+..+-++.=+...|++.+..|-+|.++.+|.+..    -...|+.
T Consensus       334 f~eNK~~M~~~~iveKL~klfp~---~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~----~~~iA~~  406 (791)
T KOG1222|consen  334 FDENKIVMEQNGIVEKLLKLFPI---QHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDT----KHGIALN  406 (791)
T ss_pred             hccchHHHHhccHHHHHHHhcCC---CCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcc----cchhhhh
Confidence            46788899999999999998876   4778888888888888777777899999999999999996431    1234666


Q ss_pred             HHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCcchhhh--hh--------cc--------
Q 010533          242 VVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVA--SQ--------VY--------  302 (508)
Q Consensus       242 ~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~~L~~~dd~r~~~--~~--------a~--------  302 (508)
                      .+.++ +-++..|..+.-..+|+.+.+.+-++.+ ++-....+.--|||.+..+....  |+        +.        
T Consensus       407 ~lYh~-S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLm  485 (791)
T KOG1222|consen  407 MLYHL-SCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLM  485 (791)
T ss_pred             hhhhh-ccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHH
Confidence            77776 4567788889888999999988876654 33222222224666544321100  00        00        


Q ss_pred             hHHHHHHhc-C--------CHHHHHHHHhcCCChhHHHHHHHHHHHhhcCh-hhHhHHhhcCCHHHHHHHHhccCCCCcH
Q 010533          303 GYARRFAKI-G--------IARALVHSLHAGLSSPSLISASIALKAVAVND-EICKSVAENGGIDALLRCIDDSGLQGNK  372 (508)
Q Consensus       303 ~~~~~i~~~-g--------~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~-e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~  372 (508)
                      .-.|.|.++ |        .+..|...++...+.+-..+..++|++|+..+ +..+.+-+..-||-+-.-|....++.  
T Consensus       486 K~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~ed--  563 (791)
T KOG1222|consen  486 KVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADED--  563 (791)
T ss_pred             HHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccch--
Confidence            011222211 1        24445555554333445566777888888855 34444445566777777777655544  


Q ss_pred             HHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHH-hcCcHHHHHHH
Q 010533          373 TVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAM-EAGSGDLAIQA  451 (508)
Q Consensus       373 ~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~-~~G~i~~Lv~~  451 (508)
                      +++-+.+-+++.+|..++....+..+|.++.++++|+....+....-+..-+...+-. ++.-+..++ +......++.+
T Consensus       564 dLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~-He~tr~~miket~~~AylIDL  642 (791)
T KOG1222|consen  564 DLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLK-HELTRRLMIKETALGAYLIDL  642 (791)
T ss_pred             hhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHH-HHHHHHHHHhhccchHHHHHH
Confidence            7888888999999988899999999999999999999666666666666666666653 444455444 44556789999


Q ss_pred             HHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHhcc
Q 010533          452 MLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMVS  487 (508)
Q Consensus       452 L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~g  487 (508)
                      |  |..+..+++-+-.+|--++.++.|-.+.+.-+.
T Consensus       643 M--HDkN~eiRkVCDn~LdIiae~d~EWAKrI~~Ek  676 (791)
T KOG1222|consen  643 M--HDKNAEIRKVCDNALDIIAEHDKEWAKRIAGEK  676 (791)
T ss_pred             H--hcccHHHHHHHHHHHHHHHHhhHHHHHHHhhhh
Confidence            9  667888887777788888888787777766544

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=3.4e-07  Score=99.49  Aligned_cols=251  Identities=10%  Similarity=0.048  Sum_probs=189.4

Q ss_pred             hhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCC-cchhHHHhcCCh
Q 010533          141 EDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDV-QSTETFRTGGGP  219 (508)
Q Consensus       141 ~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~-~~~~~i~~~ggi  219 (508)
                      +|...+.+++.+|.+...-. +.+--.-+--.-.||.|+.||+...  ..++...|+.+|++|++-. .+...+++.++|
T Consensus       180 ~Des~Qleal~Elce~L~mg-nEesLs~fpv~slvp~Lv~LL~~E~--n~DIMl~AcRaltyl~evlP~S~a~vV~~~aI  256 (1051)
T KOG0168|consen  180 SDESQQLEALTELCEMLSMG-NEESLSGFPVKSLVPVLVALLSHEH--NFDIMLLACRALTYLCEVLPRSSAIVVDEHAI  256 (1051)
T ss_pred             CChHHHHHHHHHHHHHHhhc-chhhhccccHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHHhhccchhheeecccch
Confidence            37888888888887765420 2222223333457999999999863  5788888999999998755 445677899999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCC---Ccchh
Q 010533          220 KLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTP---DDDQV  296 (508)
Q Consensus       220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~---dd~r~  296 (508)
                      |.|++=|.. -+..++.++++.+|-.+...|+   ..|.++|++...+..|.-.+..+++.|.++..|+|..   |+.  
T Consensus       257 Pvl~~kL~~-IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f--  330 (1051)
T KOG0168|consen  257 PVLLEKLLT-IEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEF--  330 (1051)
T ss_pred             HHHHHhhhh-hhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc--
Confidence            999986642 4678999999999999977666   5788999999999999877778999999888888842   322  


Q ss_pred             hhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc----ChhhHhHHhhcCCHHHHHHHHhccCCCCcH
Q 010533          297 VASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV----NDEICKSVAENGGIDALLRCIDDSGLQGNK  372 (508)
Q Consensus       297 ~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~----~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~  372 (508)
                               ..++  .++|.|..+|+.. |...++.+|.++.+++.    .++.-+.+...|-|.-...|+.-.+..-+.
T Consensus       331 ---------~~v~--ealPlL~~lLs~~-D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~  398 (1051)
T KOG0168|consen  331 ---------HFVM--EALPLLTPLLSYQ-DKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSN  398 (1051)
T ss_pred             ---------hHHH--HHHHHHHHHHhhc-cchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccc
Confidence                     1344  3699999999875 56688999999988875    345567888888888888888643222233


Q ss_pred             HHHHHHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhccC
Q 010533          373 TVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFS  412 (508)
Q Consensus       373 ~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~  412 (508)
                      .+....+..|..++. ++.....+.+.+....|..+|..++
T Consensus       399 ~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s  439 (1051)
T KOG0168|consen  399 GTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYS  439 (1051)
T ss_pred             cchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccC
Confidence            567777888888875 5888888889898899999987443

>PRK09687 putative lyase; Provisional

Probab=98.85  E-value=9.9e-07  Score=88.29  Aligned_cols=254  Identities=13%  Similarity=0.047  Sum_probs=175.9

Q ss_pred             HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHh
Q 010533          124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL  203 (508)
Q Consensus       124 l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l  203 (508)
                      ++.|...+.+.       |......++..|..+-    +         ..+++.+..++.+   .+..+...+.++|..+
T Consensus        25 ~~~L~~~L~d~-------d~~vR~~A~~aL~~~~----~---------~~~~~~l~~ll~~---~d~~vR~~A~~aLg~l   81 (280)
T PRK09687         25 DDELFRLLDDH-------NSLKRISSIRVLQLRG----G---------QDVFRLAIELCSS---KNPIERDIGADILSQL   81 (280)
T ss_pred             HHHHHHHHhCC-------CHHHHHHHHHHHHhcC----c---------chHHHHHHHHHhC---CCHHHHHHHHHHHHhc
Confidence            55566666554       6666677777776552    1         2357788888877   4788888899999987


Q ss_pred             hcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHH
Q 010533          204 VHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYD  283 (508)
Q Consensus       204 ~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~  283 (508)
                      -.....     ....++.|..++.. ..+..|+..++.+|++++..... .    ...++..+...+...+..+...+++
T Consensus        82 g~~~~~-----~~~a~~~L~~l~~~-D~d~~VR~~A~~aLG~~~~~~~~-~----~~~a~~~l~~~~~D~~~~VR~~a~~  150 (280)
T PRK09687         82 GMAKRC-----QDNVFNILNNLALE-DKSACVRASAINATGHRCKKNPL-Y----SPKIVEQSQITAFDKSTNVRFAVAF  150 (280)
T ss_pred             CCCccc-----hHHHHHHHHHHHhc-CCCHHHHHHHHHHHhcccccccc-c----chHHHHHHHHHhhCCCHHHHHHHHH
Confidence            542210     12345666666443 45789999999999998643321 1    0113455666666655578888888


Q ss_pred             HHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHH
Q 010533          284 AIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCI  363 (508)
Q Consensus       284 aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL  363 (508)
                      +|..+..                    ..+++.|+.+|++ +++.+...++.+|+.+...++        ..++.|+.+|
T Consensus       151 aLg~~~~--------------------~~ai~~L~~~L~d-~~~~VR~~A~~aLg~~~~~~~--------~~~~~L~~~L  201 (280)
T PRK09687        151 ALSVIND--------------------EAAIPLLINLLKD-PNGDVRNWAAFALNSNKYDNP--------DIREAFVAML  201 (280)
T ss_pred             HHhccCC--------------------HHHHHHHHHHhcC-CCHHHHHHHHHHHhcCCCCCH--------HHHHHHHHHh
Confidence            8865531                    1368999999986 467788999999998843221        3467889999


Q ss_pred             hccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC
Q 010533          364 DDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAG  443 (508)
Q Consensus       364 ~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G  443 (508)
                      .+.    +.+|...|+.+|+.+-.          ..++|.|+..|.  .++  ++..++.+|..+.  ++         -
T Consensus       202 ~D~----~~~VR~~A~~aLg~~~~----------~~av~~Li~~L~--~~~--~~~~a~~ALg~ig--~~---------~  252 (280)
T PRK09687        202 QDK----NEEIRIEAIIGLALRKD----------KRVLSVLIKELK--KGT--VGDLIIEAAGELG--DK---------T  252 (280)
T ss_pred             cCC----ChHHHHHHHHHHHccCC----------hhHHHHHHHHHc--CCc--hHHHHHHHHHhcC--CH---------h
Confidence            753    34899999999988532          257999999998  333  6677888888875  33         2


Q ss_pred             cHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 010533          444 SGDLAIQAMLKFPNAQQLQRSSCFMIR  470 (508)
Q Consensus       444 ~i~~Lv~~L~~h~~~~~vq~~A~~aL~  470 (508)
                      .++.|.+++..++ +..|++.|-++|.
T Consensus       253 a~p~L~~l~~~~~-d~~v~~~a~~a~~  278 (280)
T PRK09687        253 LLPVLDTLLYKFD-DNEIITKAIDKLK  278 (280)
T ss_pred             HHHHHHHHHhhCC-ChhHHHHHHHHHh
Confidence            5788999998776 7889999988875

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.82  E-value=2.5e-06  Score=89.42  Aligned_cols=275  Identities=13%  Similarity=0.126  Sum_probs=182.3

Q ss_pred             hHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHH
Q 010533          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKL  221 (508)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~  221 (508)
                      |.-....+...|..+...  ++.+..-....-.++.|...|++.  .+.+.+.-|+..|..++...+-|..|.+.+|++.
T Consensus       114 d~~i~~~a~~iLt~l~~~--~~~~~~~~~l~~~~~~l~~~l~~~--~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~  189 (429)
T cd00256         114 DQFIVHMSFSILAKLACF--GLAKMEGSDLDYYFNWLKEQLNNI--TNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPT  189 (429)
T ss_pred             chhHHHHHHHHHHHHHhc--CccccchhHHHHHHHHHHHHhhcc--CCcchHHHHHHHHHHHhCCchHHHHHHHccCHHH
Confidence            555566677777776543  222111111111234455555543  2344555566777777777777888999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCcchhhhhh
Q 010533          222 LVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQ  300 (508)
Q Consensus       222 Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~~L~~~dd~r~~~~~  300 (508)
                      |+.+|+.......++-.++-+++-++ -++.......+.+.|+.|+++++.... .++|-+..+|+||.......   +.
T Consensus       190 L~~~L~~~~~~~Ql~Y~~ll~lWlLS-F~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~---~~  265 (429)
T cd00256         190 LVKLLSNATLGFQLQYQSIFCIWLLT-FNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDR---EV  265 (429)
T ss_pred             HHHHHhhccccHHHHHHHHHHHHHHh-ccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccc---ch
Confidence            99999876557788989998888874 444455555677999999999997654 68888999999998533111   00


Q ss_pred             cchHHHHHHhcCCHHHHHHHHhcC--CChhHHHHHHH-------HHHHhhcC------------------------hhhH
Q 010533          301 VYGYARRFAKIGIARALVHSLHAG--LSSPSLISASI-------ALKAVAVN------------------------DEIC  347 (508)
Q Consensus       301 a~~~~~~i~~~g~i~~Lv~lL~~~--~d~~~~~~a~~-------aL~~La~~------------------------~e~~  347 (508)
                      .......+++.|.++ +++.|...  +|+++..++-.       .+..++.-                        .||.
T Consensus       266 ~~~~~~~mv~~~l~~-~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~  344 (429)
T cd00256         266 KKTAALQMVQCKVLK-TLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENA  344 (429)
T ss_pred             hhhHHHHHHHcChHH-HHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHH
Confidence            112344566666555 55555543  36655544322       11223321                        2456


Q ss_pred             hHHhhcCC--HHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHH
Q 010533          348 KSVAENGG--IDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSI  424 (508)
Q Consensus       348 ~~i~e~Gg--i~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~a  424 (508)
                      .++-+.+.  ++.|+++|..+.+   +.++.-||.=|+.++. .|.+|..+-+-||=+.++++|.  .+++.|+.+|+.+
T Consensus       345 ~kf~~~~~~llk~L~~iL~~s~d---~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~--h~d~~Vr~eAL~a  419 (429)
T cd00256         345 DRLNEKNYELLKILIHLLETSVD---PIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLN--HEDPNVRYEALLA  419 (429)
T ss_pred             HHHHhcchHHHHHHHHHHhcCCC---cceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhc--CCCHHHHHHHHHH
Confidence            66666553  5778889965433   3677888888999885 6788888888999999999998  6799999999999


Q ss_pred             HHHHhc
Q 010533          425 ITVLSL  430 (508)
Q Consensus       425 L~~La~  430 (508)
                      +--|..
T Consensus       420 vQklm~  425 (429)
T cd00256         420 VQKLMV  425 (429)
T ss_pred             HHHHHH
Confidence            887754

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.72  E-value=1.2e-05  Score=85.90  Aligned_cols=160  Identities=15%  Similarity=0.165  Sum_probs=119.4

Q ss_pred             ChhHHHHHHHHHHHhhcC-hhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCCcHHH
Q 010533          326 SSPSLISASIALKAVAVN-DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDK  403 (508)
Q Consensus       326 d~~~~~~a~~aL~~La~~-~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~  403 (508)
                      |......+|.++.+++.. .....-..+..+..+|+.++.++ +   ..|...++++|.||.. ...-|..+++.|||+.
T Consensus       390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp-~---~~i~~~~lgai~NlVmefs~~kskfl~~ngId~  465 (678)
T KOG1293|consen  390 DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP-E---IMIMGITLGAICNLVMEFSNLKSKFLRNNGIDI  465 (678)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc-c---hhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHH
Confidence            344556666666666542 22223355667889999999653 2   3799999999999974 5678889999999999


Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcH-HHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHH
Q 010533          404 LIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSG-DLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFC  482 (508)
Q Consensus       404 Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i-~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~  482 (508)
                      |.+.+.  ..++.++..+.|+|+++..+..+-.+........ ..|+.+. .. .+..||+++-..+||++-.+.+....
T Consensus       466 l~s~~~--~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~-nd-~d~~Vqeq~fqllRNl~c~~~~svdf  541 (678)
T KOG1293|consen  466 LESMLT--DPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLI-ND-PDWAVQEQCFQLLRNLTCNSRKSVDF  541 (678)
T ss_pred             HHHHhc--CCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHH-hC-CCHHHHHHHHHHHHHhhcCcHHHHHH
Confidence            999998  6678999999999999998777665554444443 3444444 33 46899999999999999988899999


Q ss_pred             HHhccccccHH
Q 010533          483 SVMVSRNLSDR  493 (508)
Q Consensus       483 ~~~~g~~~~~~  493 (508)
                      +++.-..+.+.
T Consensus       542 ll~~~~~~ld~  552 (678)
T KOG1293|consen  542 LLEKFKDVLDK  552 (678)
T ss_pred             HHHhhhHHHHH
Confidence            99876544443

>PRK09687 putative lyase; Provisional

Probab=98.66  E-value=4.7e-06  Score=83.45  Aligned_cols=248  Identities=8%  Similarity=-0.004  Sum_probs=167.2

Q ss_pred             cHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhh
Q 010533          174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV  253 (508)
Q Consensus       174 avp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~n  253 (508)
                      .++.|..+|.+   .+..+...++.+|..+-.          ....+.+..++.  ++++.++..++++|+.+.. .+..
T Consensus        24 ~~~~L~~~L~d---~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~--~~d~~vR~~A~~aLg~lg~-~~~~   87 (280)
T PRK09687         24 NDDELFRLLDD---HNSLKRISSIRVLQLRGG----------QDVFRLAIELCS--SKNPIERDIGADILSQLGM-AKRC   87 (280)
T ss_pred             cHHHHHHHHhC---CCHHHHHHHHHHHHhcCc----------chHHHHHHHHHh--CCCHHHHHHHHHHHHhcCC-Cccc
Confidence            37788888876   477888888888775432          234566777765  4689999999999998732 1111


Q ss_pred             HHHHHHcCcHHHHHHHHhc-CChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHH
Q 010533          254 KESYMELKIDELILEILSR-QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLIS  332 (508)
Q Consensus       254 r~~i~~~G~i~~Lv~lL~~-~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~  332 (508)
                           ...+++.|..++.. .+..+...|+.+|..++......              ...+++.+..++.+. +..+...
T Consensus        88 -----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~--------------~~~a~~~l~~~~~D~-~~~VR~~  147 (280)
T PRK09687         88 -----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY--------------SPKIVEQSQITAFDK-STNVRFA  147 (280)
T ss_pred             -----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc--------------chHHHHHHHHHhhCC-CHHHHHH
Confidence                 11356777777444 34477778999999886432110              011345555555543 6778888


Q ss_pred             HHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccC
Q 010533          333 ASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFS  412 (508)
Q Consensus       333 a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~  412 (508)
                      ++.+|+.+...          .+++.|+.+|.+.    +.+|...|+.+|+.+...+        ...++.|+.+|.  .
T Consensus       148 a~~aLg~~~~~----------~ai~~L~~~L~d~----~~~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L~--D  203 (280)
T PRK09687        148 VAFALSVINDE----------AAIPLLINLLKDP----NGDVRNWAAFALNSNKYDN--------PDIREAFVAMLQ--D  203 (280)
T ss_pred             HHHHHhccCCH----------HHHHHHHHHhcCC----CHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHhc--C
Confidence            89988766432          2678999999863    3489999999999983211        145678999997  6


Q ss_pred             CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHhcc-cccc
Q 010533          413 DDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMVS-RNLS  491 (508)
Q Consensus       413 ~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~g-~~~~  491 (508)
                      .++.|+..|+++|..+-  ++         -+++.|++.++..    .+...++.||.++.  +++....+...- ..-.
T Consensus       204 ~~~~VR~~A~~aLg~~~--~~---------~av~~Li~~L~~~----~~~~~a~~ALg~ig--~~~a~p~L~~l~~~~~d  266 (280)
T PRK09687        204 KNEEIRIEAIIGLALRK--DK---------RVLSVLIKELKKG----TVGDLIIEAAGELG--DKTLLPVLDTLLYKFDD  266 (280)
T ss_pred             CChHHHHHHHHHHHccC--Ch---------hHHHHHHHHHcCC----chHHHHHHHHHhcC--CHhHHHHHHHHHhhCCC
Confidence            68999999999998863  33         4688999999642    26678999999874  466666665532 2334


Q ss_pred             HHHHhhh
Q 010533          492 DRQRRTT  498 (508)
Q Consensus       492 ~~~~~~~  498 (508)
                      .+-+++.
T Consensus       267 ~~v~~~a  273 (280)
T PRK09687        267 NEIITKA  273 (280)
T ss_pred             hhHHHHH
Confidence            4444443

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.65  E-value=0.00016  Score=78.81  Aligned_cols=340  Identities=13%  Similarity=0.125  Sum_probs=232.2

Q ss_pred             ChHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHH
Q 010533          118 NPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCL  197 (508)
Q Consensus       118 ~~v~~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al  197 (508)
                      +.+.+.++.|..-+.+..      =.++-+.|++.|..+++     .+|..++..| +++|+..|+..- .|+++...+|
T Consensus        18 ~s~aETI~kLcDRvessT------L~eDRR~A~rgLKa~sr-----kYR~~Vga~G-mk~li~vL~~D~-~D~E~ik~~L   84 (970)
T KOG0946|consen   18 QSAAETIEKLCDRVESST------LLEDRRDAVRGLKAFSR-----KYREEVGAQG-MKPLIQVLQRDY-MDPEIIKYAL   84 (970)
T ss_pred             ccHHhHHHHHHHHHhhcc------chhhHHHHHHHHHHHHH-----HHHHHHHHcc-cHHHHHHHhhcc-CCHHHHHHHH
Confidence            456778888877665531      46788899999988865     4776766554 888889887643 5889999999


Q ss_pred             HHHHHhhcCC-------cch----------hHHHh-cCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhc-CChhhHHHHH
Q 010533          198 KTMALLVHDV-------QST----------ETFRT-GGGPKLLVNILIDGNEDPEILNSGFAVVAASAT-GNEVVKESYM  258 (508)
Q Consensus       198 ~aLa~l~~~~-------~~~----------~~i~~-~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~-~~e~nr~~i~  258 (508)
                      .++..+....       +++          +.|+. .+-|..|+..+...  |-.|+..++..+.++.+ ...+.++.++
T Consensus        85 dTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~--DF~VR~~aIqLlsalls~r~~e~q~~ll  162 (970)
T KOG0946|consen   85 DTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF--DFHVRLYAIQLLSALLSCRPTELQDALL  162 (970)
T ss_pred             HHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh--chhhhhHHHHHHHHHHhcCCHHHHHHHH
Confidence            9999886422       222          22333 46788888888743  66788888888888644 4456788888


Q ss_pred             Hc-CcHHHHHHHHhcCChHHHHH-HHHHHHHhcCCCcchhhhhhcchHHHHHH-hcCCHHHHHHHHhcCC--Ch-hHHHH
Q 010533          259 EL-KIDELILEILSRQRNDSIQS-LYDAIRVLLTPDDDQVVASQVYGYARRFA-KIGIARALVHSLHAGL--SS-PSLIS  332 (508)
Q Consensus       259 ~~-G~i~~Lv~lL~~~~~~~~~~-A~~aL~~L~~~dd~r~~~~~a~~~~~~i~-~~g~i~~Lv~lL~~~~--d~-~~~~~  332 (508)
                      .. -||..|+.+|.... +++++ +.-.|..|+.+.          .++++++ =.++.+.|.+++....  |. -++.+
T Consensus       163 ~~P~gIS~lmdlL~Dsr-E~IRNe~iLlL~eL~k~n----------~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveD  231 (970)
T KOG0946|consen  163 VSPMGISKLMDLLRDSR-EPIRNEAILLLSELVKDN----------SSIQKLVAFENAFERLFSIIEEEGGLDGGIVVED  231 (970)
T ss_pred             HCchhHHHHHHHHhhhh-hhhchhHHHHHHHHHccC----------chHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHH
Confidence            77 48999999998644 55565 566666777543          3456666 2389999999998744  43 35677


Q ss_pred             HHHHHHHhhcCh-hhHhHHhhcCCHHHHHHHHhccCCCCc--------HHH--HHHHHHHHHHhhC--Cc-----hhHHH
Q 010533          333 ASIALKAVAVND-EICKSVAENGGIDALLRCIDDSGLQGN--------KTV--ARICCSLLSKLAG--SD-----SNKSA  394 (508)
Q Consensus       333 a~~aL~~La~~~-e~~~~i~e~Ggi~~Lv~lL~~~~~~~~--------~~v--~~~al~aL~~La~--~~-----~~k~~  394 (508)
                      +...|-||-.++ .|-..+.+.|-|+.|..+|..+. .++        ..|  +..++.+++.|..  +.     .+..+
T Consensus       232 CL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~-~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~  310 (970)
T KOG0946|consen  232 CLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFE-FGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKA  310 (970)
T ss_pred             HHHHHHHHHhhCcchhhHHhccccHHHHHhhcCccc-ccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            777788888754 55666667777999998886431 111        111  2356777777752  32     24457


Q ss_pred             HHhCCcHHHHHHHHhccC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCc---------HHHHHHHHHcCCCcHHHHHH
Q 010533          395 IIENGGMDKLIVVSARFS-DDASVLQEVMSIITVLSLRSPENAARAMEAGS---------GDLAIQAMLKFPNAQQLQRS  464 (508)
Q Consensus       395 Iv~~Ggl~~Lv~lL~~~~-~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~---------i~~Lv~~L~~h~~~~~vq~~  464 (508)
                      +...+++..|..++- |+ -...|+..+.-++++...+|..|+..+....+         +-.+.-.|-........+-.
T Consensus       311 l~ss~ll~~Lc~il~-~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcA  389 (970)
T KOG0946|consen  311 LVSSHLLDVLCTILM-HPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCA  389 (970)
T ss_pred             HHHcchHHHHHHHHc-CCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHH
Confidence            888899999999886 33 34679999999999999999888888876432         12222223222222334334


Q ss_pred             HHHHHHHhhhcCccchHHHHh
Q 010533          465 SCFMIRNLVARNPENSFCSVM  485 (508)
Q Consensus       465 A~~aL~nL~~~~~e~~~~~~~  485 (508)
                      ....++....+|.+....|+.
T Consensus       390 v~ycf~s~l~dN~~gq~~~l~  410 (970)
T KOG0946|consen  390 VLYCFRSYLYDNDDGQRKFLK  410 (970)
T ss_pred             HHHHHHHHHhcchhhHHHHHH
Confidence            455777777888888777765

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.61  E-value=1.9e-05  Score=91.43  Aligned_cols=214  Identities=12%  Similarity=0.062  Sum_probs=119.0

Q ss_pred             CcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChh
Q 010533          173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV  252 (508)
Q Consensus       173 Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~  252 (508)
                      +++|.|+.+|+.   ++.++...|+.+|..+....         .-.+.|...|.+  +++.++..++.+|..+-.    
T Consensus       652 ~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~---------~~~~~L~~~L~~--~d~~VR~~A~~aL~~~~~----  713 (897)
T PRK13800        652 GFGPALVAALGD---GAAAVRRAAAEGLRELVEVL---------PPAPALRDHLGS--PDPVVRAAALDVLRALRA----  713 (897)
T ss_pred             hHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhcc---------CchHHHHHHhcC--CCHHHHHHHHHHHHhhcc----
Confidence            467888888865   47778877777776653211         112456666753  577888888877776421    


Q ss_pred             hHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHH
Q 010533          253 VKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLIS  332 (508)
Q Consensus       253 nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~  332 (508)
                              +-...|+..|...+..+...|+.+|..+-                       ..+.|..++.+ .++.+...
T Consensus       714 --------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~-----------------------~~~~l~~~l~D-~~~~VR~~  761 (897)
T PRK13800        714 --------GDAALFAAALGDPDHRVRIEAVRALVSVD-----------------------DVESVAGAATD-ENREVRIA  761 (897)
T ss_pred             --------CCHHHHHHHhcCCCHHHHHHHHHHHhccc-----------------------CcHHHHHHhcC-CCHHHHHH
Confidence                    12335666777666566667776666431                       12334444443 24556666


Q ss_pred             HHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccC
Q 010533          333 ASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFS  412 (508)
Q Consensus       333 a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~  412 (508)
                      ++.+|..+...+        .++++.|..++.+.    ++.|+..++.+|+.+...+         ..++.++.+|.  .
T Consensus       762 aa~aL~~~~~~~--------~~~~~~L~~ll~D~----d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~--d  818 (897)
T PRK13800        762 VAKGLATLGAGG--------APAGDAVRALTGDP----DPLVRAAALAALAELGCPP---------DDVAAATAALR--A  818 (897)
T ss_pred             HHHHHHHhcccc--------chhHHHHHHHhcCC----CHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhc--C
Confidence            666666554321        12245566555542    2366666666666653211         11234555565  4


Q ss_pred             CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 010533          413 DDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNL  472 (508)
Q Consensus       413 ~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL  472 (508)
                      +++.|+..|+.+|..+..  +         ..++.|+.+|+.  .+..|++.|.++|..+
T Consensus       819 ~d~~VR~~Aa~aL~~l~~--~---------~a~~~L~~~L~D--~~~~VR~~A~~aL~~~  865 (897)
T PRK13800        819 SAWQVRQGAARALAGAAA--D---------VAVPALVEALTD--PHLDVRKAAVLALTRW  865 (897)
T ss_pred             CChHHHHHHHHHHHhccc--c---------chHHHHHHHhcC--CCHHHHHHHHHHHhcc
Confidence            456666666666665531  1         123556666642  3456666666666654

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=1.1e-05  Score=88.06  Aligned_cols=248  Identities=11%  Similarity=0.076  Sum_probs=185.4

Q ss_pred             CHHHHHHHHHHHHHhhc-CCcch-hHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHH
Q 010533          189 SKRVLDSCLKTMALLVH-DVQST-ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELI  266 (508)
Q Consensus       189 ~~~~~~~al~aLa~l~~-~~~~~-~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~L  266 (508)
                      |+..+..++.-|+.++. +++.. .-|--.-.+|.|+.+|+.. .+.+++..||++|.++|.-.+.....+++.|+||.|
T Consensus       181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E-~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl  259 (1051)
T KOG0168|consen  181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHE-HNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVL  259 (1051)
T ss_pred             ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHhhccchhheeecccchHHH
Confidence            77778778887777553 33211 1222234689999999864 569999999999999998778778888899999999


Q ss_pred             HHHHhcCCh-HHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc--C
Q 010533          267 LEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV--N  343 (508)
Q Consensus       267 v~lL~~~~~-~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~--~  343 (508)
                      ++-|..-.- ++-+.+..||-.|+..            |-+.|.++|+|-..+..|.=++ -.++..|.....|++.  .
T Consensus       260 ~~kL~~IeyiDvAEQ~LqALE~iSR~------------H~~AiL~AG~l~a~LsylDFFS-i~aQR~AlaiaaN~Cksi~  326 (1051)
T KOG0168|consen  260 LEKLLTIEYIDVAEQSLQALEKISRR------------HPKAILQAGALSAVLSYLDFFS-IHAQRVALAIAANCCKSIR  326 (1051)
T ss_pred             HHhhhhhhhhHHHHHHHHHHHHHHhh------------ccHHHHhcccHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCC
Confidence            988876433 6667778888888753            4567889999999999887653 4566677666777775  3


Q ss_pred             hhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC---C-chhHHHHHhCCcHHHHHHHHhccC--CCHHH
Q 010533          344 DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG---S-DSNKSAIIENGGMDKLIVVSARFS--DDASV  417 (508)
Q Consensus       344 ~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~---~-~~~k~~Iv~~Ggl~~Lv~lL~~~~--~~~~v  417 (508)
                      .+--..|+|  .+|.|-.+|+.+.    ...++.+|-++..++.   + ++--+.+...|-|.-+.++|.-..  -+..+
T Consensus       327 sd~f~~v~e--alPlL~~lLs~~D----~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~  400 (1051)
T KOG0168|consen  327 SDEFHFVME--ALPLLTPLLSYQD----KKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGT  400 (1051)
T ss_pred             CccchHHHH--HHHHHHHHHhhcc----chhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccc
Confidence            444455555  5899999998753    2688999999999872   3 344577888999999999986211  11234


Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCC
Q 010533          418 LQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFP  456 (508)
Q Consensus       418 ~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~  456 (508)
                      .-..+.+|..+|.+.|.....+...++...|..+|..+.
T Consensus       401 ~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s  439 (1051)
T KOG0168|consen  401 YTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYS  439 (1051)
T ss_pred             hhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccC
Confidence            556778889999988999999999999999999996543

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.48  E-value=7.1e-05  Score=86.82  Aligned_cols=211  Identities=11%  Similarity=0.062  Sum_probs=152.5

Q ss_pred             HHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhH
Q 010533          175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVK  254 (508)
Q Consensus       175 vp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr  254 (508)
                      .+.|..+|++   ++..++..++.+|..+-.           +....++..|.  .++..++..++++|..+        
T Consensus       686 ~~~L~~~L~~---~d~~VR~~A~~aL~~~~~-----------~~~~~l~~~L~--D~d~~VR~~Av~aL~~~--------  741 (897)
T PRK13800        686 APALRDHLGS---PDPVVRAAALDVLRALRA-----------GDAALFAAALG--DPDHRVRIEAVRALVSV--------  741 (897)
T ss_pred             hHHHHHHhcC---CCHHHHHHHHHHHHhhcc-----------CCHHHHHHHhc--CCCHHHHHHHHHHHhcc--------
Confidence            3677778876   477888888888876532           22456777776  46889999999988764        


Q ss_pred             HHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHH
Q 010533          255 ESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISAS  334 (508)
Q Consensus       255 ~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~  334 (508)
                            +..+.|..++...+..+...++.+|..+...+                  ...++.|..++++. ++.+...++
T Consensus       742 ------~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~------------------~~~~~~L~~ll~D~-d~~VR~aA~  796 (897)
T PRK13800        742 ------DDVESVAGAATDENREVRIAVAKGLATLGAGG------------------APAGDAVRALTGDP-DPLVRAAAL  796 (897)
T ss_pred             ------cCcHHHHHHhcCCCHHHHHHHHHHHHHhcccc------------------chhHHHHHHHhcCC-CHHHHHHHH
Confidence                  11244667777777788888999998775322                  13478888888764 688888998


Q ss_pred             HHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCC
Q 010533          335 IALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDD  414 (508)
Q Consensus       335 ~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~  414 (508)
                      .+|+.+...+.         .+..++..|.+.    ++.|...|+.+|..+..          ...++.|+.+|.  .++
T Consensus       797 ~aLg~~g~~~~---------~~~~l~~aL~d~----d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~--D~~  851 (897)
T PRK13800        797 AALAELGCPPD---------DVAAATAALRAS----AWQVRQGAARALAGAAA----------DVAVPALVEALT--DPH  851 (897)
T ss_pred             HHHHhcCCcch---------hHHHHHHHhcCC----ChHHHHHHHHHHHhccc----------cchHHHHHHHhc--CCC
Confidence            88888754321         235577778653    34799999999987642          235689999998  778


Q ss_pred             HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 010533          415 ASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRN  471 (508)
Q Consensus       415 ~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~n  471 (508)
                      ..|+..|+.+|..+. .++.         ..+.|..+++.  .++.|++.|..||..
T Consensus       852 ~~VR~~A~~aL~~~~-~~~~---------a~~~L~~al~D--~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        852 LDVRKAAVLALTRWP-GDPA---------ARDALTTALTD--SDADVRAYARRALAH  896 (897)
T ss_pred             HHHHHHHHHHHhccC-CCHH---------HHHHHHHHHhC--CCHHHHHHHHHHHhh
Confidence            999999999999873 3443         34566777863  578999999999864

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.41  E-value=0.0002  Score=78.08  Aligned_cols=267  Identities=16%  Similarity=0.181  Sum_probs=190.6

Q ss_pred             hHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCh------hhH----------HHHH-HcCcHHHHHHHHhcC
Q 010533          211 ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE------VVK----------ESYM-ELKIDELILEILSRQ  273 (508)
Q Consensus       211 ~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e------~nr----------~~i~-~~G~i~~Lv~lL~~~  273 (508)
                      ..-+.+.|+++++..|.+...|+++...++..+..+.+..+      +.+          +.++ ..+-|..|+..+...
T Consensus        55 R~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~  134 (970)
T KOG0946|consen   55 REEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF  134 (970)
T ss_pred             HHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh
Confidence            44566789999999999888899999999999998866543      222          3444 447889999999876


Q ss_pred             ChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHH-hcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhh
Q 010533          274 RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-KIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAE  352 (508)
Q Consensus       274 ~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~-~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e  352 (508)
                      +-.+.+.+...|.+|...--.        +-...+. ---||..|+.+|++... .+.-++...|..|..++...++++.
T Consensus       135 DF~VR~~aIqLlsalls~r~~--------e~q~~ll~~P~gIS~lmdlL~DsrE-~IRNe~iLlL~eL~k~n~~IQKlVA  205 (970)
T KOG0946|consen  135 DFHVRLYAIQLLSALLSCRPT--------ELQDALLVSPMGISKLMDLLRDSRE-PIRNEAILLLSELVKDNSSIQKLVA  205 (970)
T ss_pred             chhhhhHHHHHHHHHHhcCCH--------HHHHHHHHCchhHHHHHHHHhhhhh-hhchhHHHHHHHHHccCchHHHHHH
Confidence            657888888888887643211        1222333 33789999999987432 2455666778889888888877664


Q ss_pred             -cCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCchhHHHHHhCCcHHHHHHHHhccC-CC--------HH--HHH
Q 010533          353 -NGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFS-DD--------AS--VLQ  419 (508)
Q Consensus       353 -~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~Ggl~~Lv~lL~~~~-~~--------~~--v~e  419 (508)
                       ..+...|.+++...+....--|+..|+.+|-||- .|..|..-+.+.+-||.|..+|..+- .+        ..  ..-
T Consensus       206 FENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~  285 (970)
T KOG0946|consen  206 FENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVI  285 (970)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHH
Confidence             5678889999986432111258899999999986 57789999998888999998885321 11        11  123


Q ss_pred             HHHHHHHHHhc-CC-----hhhHHHHHhcCcHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhhcCccchHHHHhcc
Q 010533          420 EVMSIITVLSL-RS-----PENAARAMEAGSGDLAIQAMLKFPN-AQQLQRSSCFMIRNLVARNPENSFCSVMVS  487 (508)
Q Consensus       420 ~a~~aL~~La~-~~-----~~~~~~i~~~G~i~~Lv~~L~~h~~-~~~vq~~A~~aL~nL~~~~~e~~~~~~~~g  487 (508)
                      .++-++..|.. +|     ..|.+.+...+++..|+.++ .|++ ..+|+..+...+.+++.+|..+...|.+-.
T Consensus       286 ~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il-~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~  359 (970)
T KOG0946|consen  286 EALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTIL-MHPGVPADILTESIITVAEVVRGNARNQDEFADVT  359 (970)
T ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHH-cCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhcc
Confidence            34455555542 12     23456788889999999887 4664 457888898899999988888888887653

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.40  E-value=4.7e-05  Score=82.82  Aligned_cols=288  Identities=16%  Similarity=0.125  Sum_probs=171.7

Q ss_pred             hHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHh-hcCCcchhHHHhcCChH
Q 010533          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL-VHDVQSTETFRTGGGPK  220 (508)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l-~~~~~~~~~i~~~ggi~  220 (508)
                      +..-.+.|+-.+.++.+.  +|+   .+... .+|.|..+|..   .+..++..|+.++..+ .++     .... ..++
T Consensus       127 ~~~VRk~A~~~l~~i~~~--~p~---~~~~~-~~~~l~~lL~d---~~~~V~~~a~~~l~~i~~~~-----~~~~-~~~~  191 (526)
T PF01602_consen  127 SPYVRKKAALALLKIYRK--DPD---LVEDE-LIPKLKQLLSD---KDPSVVSAALSLLSEIKCND-----DSYK-SLIP  191 (526)
T ss_dssp             SHHHHHHHHHHHHHHHHH--CHC---CHHGG-HHHHHHHHTTH---SSHHHHHHHHHHHHHHHCTH-----HHHT-THHH
T ss_pred             chHHHHHHHHHHHHHhcc--CHH---HHHHH-HHHHHhhhccC---CcchhHHHHHHHHHHHccCc-----chhh-hhHH
Confidence            344445566666666554  333   22222 57777777755   3677777777777776 221     1111 3344


Q ss_pred             HHHHHHhc--CCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhh
Q 010533          221 LLVNILID--GNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVA  298 (508)
Q Consensus       221 ~Lv~lL~~--~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~  298 (508)
                      .+++.|.+  ...++..+...++++...+...+.....   ...++.+...|.+.+..++-+++.++..+...+.     
T Consensus       192 ~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----  263 (526)
T PF01602_consen  192 KLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----  263 (526)
T ss_dssp             HHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----
T ss_pred             HHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----
Confidence            44444331  2457888888888888776555544411   3456677777776555777777777777653221     


Q ss_pred             hhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHH
Q 010533          299 SQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARIC  378 (508)
Q Consensus       299 ~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~a  378 (508)
                                .-..++++|+.+|.+ +++++..-++.+|..++...  ...+ .  .....+..+....   +..+...+
T Consensus       264 ----------~~~~~~~~L~~lL~s-~~~nvr~~~L~~L~~l~~~~--~~~v-~--~~~~~~~~l~~~~---d~~Ir~~~  324 (526)
T PF01602_consen  264 ----------LLQKAINPLIKLLSS-SDPNVRYIALDSLSQLAQSN--PPAV-F--NQSLILFFLLYDD---DPSIRKKA  324 (526)
T ss_dssp             ----------HHHHHHHHHHHHHTS-SSHHHHHHHHHHHHHHCCHC--HHHH-G--THHHHHHHHHCSS---SHHHHHHH
T ss_pred             ----------HHHhhHHHHHHHhhc-ccchhehhHHHHHHHhhccc--chhh-h--hhhhhhheecCCC---ChhHHHHH
Confidence                      112568999999984 56778888888888888754  1122 2  3344555665322   35899999


Q ss_pred             HHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCc
Q 010533          379 CSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNA  458 (508)
Q Consensus       379 l~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~  458 (508)
                      +.+|..++. +.|...|     ++.|...+.. ..++.+++.++.+|..++.+.+......     +..+++++...  .
T Consensus       325 l~lL~~l~~-~~n~~~I-----l~eL~~~l~~-~~d~~~~~~~i~~I~~la~~~~~~~~~~-----v~~l~~ll~~~--~  390 (526)
T PF01602_consen  325 LDLLYKLAN-ESNVKEI-----LDELLKYLSE-LSDPDFRRELIKAIGDLAEKFPPDAEWY-----VDTLLKLLEIS--G  390 (526)
T ss_dssp             HHHHHHH---HHHHHHH-----HHHHHHHHHH-C--HHHHHHHHHHHHHHHHHHGSSHHHH-----HHHHHHHHHCT--G
T ss_pred             HHHHhhccc-ccchhhH-----HHHHHHHHHh-ccchhhhhhHHHHHHHHHhccCchHHHH-----HHHHHHhhhhc--c
Confidence            999999874 4444443     5567777731 3467799999999999987665544443     35566666532  2


Q ss_pred             HHHHHHHHHHHHHhhhcCccchHHHHh
Q 010533          459 QQLQRSSCFMIRNLVARNPENSFCSVM  485 (508)
Q Consensus       459 ~~vq~~A~~aL~nL~~~~~e~~~~~~~  485 (508)
                      ..+..++...++++..++|+.+...+.
T Consensus       391 ~~~~~~~~~~i~~ll~~~~~~~~~~l~  417 (526)
T PF01602_consen  391 DYVSNEIINVIRDLLSNNPELREKILK  417 (526)
T ss_dssp             GGCHCHHHHHHHHHHHHSTTTHHHHHH
T ss_pred             ccccchHHHHHHHHhhcChhhhHHHHH
Confidence            334445555666666666665554443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.37  E-value=0.00027  Score=72.41  Aligned_cols=279  Identities=15%  Similarity=0.129  Sum_probs=187.7

Q ss_pred             cHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHh-------cCChHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 010533          174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRT-------GGGPKLLVNILIDGNEDPEILNSGFAVVAAS  246 (508)
Q Consensus       174 avp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~-------~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l  246 (508)
                      .+-.++.|++...  ..+....++.-+.-++..+..+..+..       .-.-+..+.+|.+  .+.-+.+.+.++++.+
T Consensus        66 ~v~~fi~LlS~~~--kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r--~d~~iv~~~~~Ils~l  141 (442)
T KOG2759|consen   66 YVKTFINLLSHID--KDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNR--QDTFIVEMSFRILSKL  141 (442)
T ss_pred             HHHHHHHHhchhh--hHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhc--CChHHHHHHHHHHHHH
Confidence            4677888887652  334555667777777766666655432       1125678888875  3666777688888776


Q ss_pred             hcC-Chh-hHHH-HHHcCcHHHHHHHHhc-CChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHH-
Q 010533          247 ATG-NEV-VKES-YMELKIDELILEILSR-QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSL-  321 (508)
Q Consensus       247 ~~~-~e~-nr~~-i~~~G~i~~Lv~lL~~-~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL-  321 (508)
                      +.- +.. .... -+.   ...|..+|++ .+++...-+.+.|..|.+.+..|.          .++...|+..++..+ 
T Consensus       142 a~~g~~~~~~~e~~~~---~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~----------~~v~adg~~~l~~~l~  208 (442)
T KOG2759|consen  142 ACFGNCKMELSELDVY---KGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRY----------AFVIADGVSLLIRILA  208 (442)
T ss_pred             HHhccccccchHHHHH---HHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhh----------eeeecCcchhhHHHHh
Confidence            432 111 1111 111   2345566666 344666667778998988887665          355668888888888 


Q ss_pred             hcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCc-------hhHHH
Q 010533          322 HAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSD-------SNKSA  394 (508)
Q Consensus       322 ~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~-------~~k~~  394 (508)
                      .+..+-.++...+.++|-|+.++..++.+-..+-|+.|.++++....+   .|.+-++++++||....       +....
T Consensus       209 s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KE---KV~Rivlai~~Nll~k~~~~~~~k~~~~~  285 (442)
T KOG2759|consen  209 STKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKE---KVTRIVLAIFRNLLDKGPDRETKKDIASQ  285 (442)
T ss_pred             ccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccCchhhHHHHHHHH
Confidence            443356788999999999999999998887778899999999976543   89999999999997533       33345


Q ss_pred             HHhCCcHHHHHHHHh-ccCCCHH---------------------------------------------------------
Q 010533          395 IIENGGMDKLIVVSA-RFSDDAS---------------------------------------------------------  416 (508)
Q Consensus       395 Iv~~Ggl~~Lv~lL~-~~~~~~~---------------------------------------------------------  416 (508)
                      ++..+ ++..++.|. +.-+++.                                                         
T Consensus       286 mv~~~-v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnenn  364 (442)
T KOG2759|consen  286 MVLCK-VLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENN  364 (442)
T ss_pred             HHhcC-chHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhcc
Confidence            55544 444455443 2222221                                                         


Q ss_pred             ------------------HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhc
Q 010533          417 ------------------VLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR  475 (508)
Q Consensus       417 ------------------v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~  475 (508)
                                        +.--||.=|.......|+-+..+-..||=+.++++|. | .++.|+.+|..|+.-|-.+
T Consensus       365 yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Lln-h-~d~~Vry~ALlavQ~lm~~  439 (442)
T KOG2759|consen  365 YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLN-H-EDPEVRYHALLAVQKLMVH  439 (442)
T ss_pred             HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhc-C-CCchHHHHHHHHHHHHHhh
Confidence                              1122555556666667888888888899999999994 5 5689999999988776554

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=2e-05  Score=79.29  Aligned_cols=151  Identities=13%  Similarity=0.213  Sum_probs=128.5

Q ss_pred             ChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCCcHHHH
Q 010533          326 SSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKL  404 (508)
Q Consensus       326 d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~L  404 (508)
                      +.+-+..+..-|..+..+=+|...++..||..+++..+.+.    +..+.+.|+++|+.++. ||.....+++.||++.|
T Consensus        96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~----~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L  171 (342)
T KOG2160|consen   96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENS----DAELRELAARVIGTAVQNNPKSQEQVIELGALSKL  171 (342)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCC----cHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence            44555666666777777778889999999999999977753    34899999999999985 78999999999999999


Q ss_pred             HHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchH
Q 010533          405 IVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSF  481 (508)
Q Consensus       405 v~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~  481 (508)
                      +..+. +.++-.++.+|+.++++|-.+++.-...+...+|...|..+|+....+...|+.+...|..+.........
T Consensus       172 l~~ls-~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d  247 (342)
T KOG2160|consen  172 LKILS-SDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDED  247 (342)
T ss_pred             HHHHc-cCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhh
Confidence            99998 45567888999999999998888889999999999999999998767789999999999999875554443

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=5.6e-05  Score=76.16  Aligned_cols=183  Identities=21%  Similarity=0.183  Sum_probs=135.8

Q ss_pred             CHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHH
Q 010533          189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILE  268 (508)
Q Consensus       189 ~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~  268 (508)
                      +.+-...|+..|..++++-.+-.+++..||..+++..|.  ..+.++.+.|+++|+.++..++...+.+++.|+.+.|+.
T Consensus        96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~--~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~  173 (342)
T KOG2160|consen   96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLE--NSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK  173 (342)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhc--CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence            556677789999988876666689999999999999886  468999999999999999999999999999999999999


Q ss_pred             HHhcCCh-HHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCC-ChhHHHHHHHHHHHhhcChhh
Q 010533          269 ILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SSPSLISASIALKAVAVNDEI  346 (508)
Q Consensus       269 lL~~~~~-~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~-d~~~~~~a~~aL~~La~~~e~  346 (508)
                      .|.+.++ .+...|..|+++|.++...         -...+...+|...|..+|++.. +...+..+...+.+|...+..
T Consensus       174 ~ls~~~~~~~r~kaL~AissLIRn~~~---------g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s  244 (342)
T KOG2160|consen  174 ILSSDDPNTVRTKALFAISSLIRNNKP---------GQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKS  244 (342)
T ss_pred             HHccCCCchHHHHHHHHHHHHHhcCcH---------HHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhh
Confidence            9997554 6667788889988876532         1234557788999999999864 456777888888888874433


Q ss_pred             HhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHh
Q 010533          347 CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKL  385 (508)
Q Consensus       347 ~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~L  385 (508)
                      ...++..-+.+..+..+....+   .++.+.++.++-.+
T Consensus       245 ~~d~~~~~~f~~~~~~l~~~l~---~~~~e~~l~~~l~~  280 (342)
T KOG2160|consen  245 DEDIASSLGFQRVLENLISSLD---FEVNEAALTALLSL  280 (342)
T ss_pred             hhhHHHHhhhhHHHHHHhhccc---hhhhHHHHHHHHHH
Confidence            3334443344443333333222   26666666665544

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.32  E-value=2.6e-06  Score=74.11  Aligned_cols=110  Identities=15%  Similarity=0.044  Sum_probs=95.7

Q ss_pred             cHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHH
Q 010533          371 NKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQ  450 (508)
Q Consensus       371 ~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~  450 (508)
                      +.+..+....-|+|.|.+|-|...+.+...++.+++.|.  ..+..+.+.+.+.|+|+|. ++.|.+.|++++|+|.++.
T Consensus        30 ~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~--e~ne~LvefgIgglCNlC~-d~~n~~~I~ea~g~plii~  106 (173)
T KOG4646|consen   30 NIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLE--EQNELLVEFGIGGLCNLCL-DKTNAKFIREALGLPLIIF  106 (173)
T ss_pred             cHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhh--cccHHHHHHhHHHHHhhcc-ChHHHHHHHHhcCCceEEe
Confidence            458888999999999999999999999999999999998  6789999999999999996 8999999999999999999


Q ss_pred             HHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHh
Q 010533          451 AMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVM  485 (508)
Q Consensus       451 ~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~  485 (508)
                      .+.+++  ..+...|..++..|.-.+...+..++.
T Consensus       107 ~lssp~--e~tv~sa~~~l~~l~~~~Rt~r~ell~  139 (173)
T KOG4646|consen  107 VLSSPP--EITVHSAALFLQLLEFGERTERDELLS  139 (173)
T ss_pred             ecCCCh--HHHHHHHHHHHHHhcCcccchhHHhcc
Confidence            997654  456677888998888766666655544

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.31  E-value=0.00046  Score=70.96  Aligned_cols=263  Identities=14%  Similarity=0.173  Sum_probs=181.9

Q ss_pred             HHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcC-----C----hhhHHHHHHcCcHHHH
Q 010533          196 CLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATG-----N----EVVKESYMELKIDELI  266 (508)
Q Consensus       196 al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~-----~----e~nr~~i~~~G~i~~L  266 (508)
                      .++-+..++..+.-.+.+++-.|++.++++|.  +++.++...++..+..+.-.     +    +.--+.+++.+++++|
T Consensus       104 ~IQ~mhvlAt~PdLYp~lveln~V~slL~LLg--HeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLL  181 (536)
T KOG2734|consen  104 IIQEMHVLATMPDLYPILVELNAVQSLLELLG--HENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALL  181 (536)
T ss_pred             HHHHHHhhhcChHHHHHHHHhccHHHHHHHhc--CCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHH
Confidence            45556666554444578899999999999997  56888999999999888522     1    1345577888999999


Q ss_pred             HHHHhcCChHH------HHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCC--ChhHHHHHHHHHH
Q 010533          267 LEILSRQRNDS------IQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL--SSPSLISASIALK  338 (508)
Q Consensus       267 v~lL~~~~~~~------~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~--d~~~~~~a~~aL~  338 (508)
                      +.-+.+-+.++      +.++...+-||..-+         .+++..+++.|.+.-|+.-+....  ++.. ..+...|+
T Consensus       182 vqnveRLdEsvkeea~gv~~~L~vveNlv~~r---------~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk-~YasEiLa  251 (536)
T KOG2734|consen  182 VQNVERLDESVKEEADGVHNTLAVVENLVEVR---------PAICTEIVEQGLLSWLLKRLKGKAAFDANK-QYASEILA  251 (536)
T ss_pred             HHHHHHhhhcchhhhhhhHHHHHHHHHHHhcc---------HHHHHHHHHhhHHHHHHHHHhcccCcchhH-HHHHHHHH
Confidence            99998754422      334455566665433         246677888787777777555432  3322 23333343


Q ss_pred             Hh-hcChhhHhHHhhcCCHHHHHHHHhccCCC----C-cHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccC
Q 010533          339 AV-AVNDEICKSVAENGGIDALLRCIDDSGLQ----G-NKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFS  412 (508)
Q Consensus       339 ~L-a~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~----~-~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~  412 (508)
                      -+ ...+++...+....|+..+++-+.-+..+    . ..+..++.+.+|..+-..++|+..++...|++...-.|+ + 
T Consensus       252 illq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr-~-  329 (536)
T KOG2734|consen  252 ILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLR-E-  329 (536)
T ss_pred             HHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHH-H-
Confidence            33 34567888888999999999876532111    1 247888899999888889999999999999988777776 2 


Q ss_pred             CCHHHHHHHHHHHHHHhcCCh--hhHHHHHhcCcHHHHHHHHHcCC--------CcHHHHHHHHHHHHHhh
Q 010533          413 DDASVLQEVMSIITVLSLRSP--ENAARAMEAGSGDLAIQAMLKFP--------NAQQLQRSSCFMIRNLV  473 (508)
Q Consensus       413 ~~~~v~e~a~~aL~~La~~~~--~~~~~i~~~G~i~~Lv~~L~~h~--------~~~~vq~~A~~aL~nL~  473 (508)
                       ....+..+..+|-.+..+.+  .+|..+++.+|...+.-+.-+-|        ....+.+..|..|..+-
T Consensus       330 -Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~  399 (536)
T KOG2734|consen  330 -KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLL  399 (536)
T ss_pred             -HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHH
Confidence             24456788999999888777  89999999999888877532211        22345556676665554

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.25  E-value=1.8e-06  Score=60.22  Aligned_cols=40  Identities=35%  Similarity=0.457  Sum_probs=37.8

Q ss_pred             CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010533          388 SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS  429 (508)
Q Consensus       388 ~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La  429 (508)
                      +++++..|++.|++|+|+++|.  +.++.++++|+|+|.|||
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~--~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLK--SPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTT--SSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHc--CCCHHHHHHHHHHHHHHh
Confidence            4789999999999999999999  789999999999999998

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.24  E-value=7.4e-06  Score=71.30  Aligned_cols=147  Identities=14%  Similarity=0.171  Sum_probs=118.6

Q ss_pred             CCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchh
Q 010533          312 GIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSN  391 (508)
Q Consensus       312 g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~  391 (508)
                      +.+..||+-....++.+.++.+..-|.|.|-++.|-..+.+...++..+..|...    |..+++-+.+.|.|++-.+.|
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~----ne~LvefgIgglCNlC~d~~n   91 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQ----NELLVEFGIGGLCNLCLDKTN   91 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcc----cHHHHHHhHHHHHhhccChHH
Confidence            5677788777776677788888888999999999999999999999999999864    337999999999999999999


Q ss_pred             HHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 010533          392 KSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRN  471 (508)
Q Consensus       392 k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~n  471 (508)
                      +..|++++|+|.++..+.  +......-.++.+|..|+..+..-+..+.    -|.++++|..+.      ..++.-.||
T Consensus        92 ~~~I~ea~g~plii~~ls--sp~e~tv~sa~~~l~~l~~~~Rt~r~ell----~p~Vv~~v~r~~------~s~s~~~rn  159 (173)
T KOG4646|consen   92 AKFIREALGLPLIIFVLS--SPPEITVHSAALFLQLLEFGERTERDELL----SPAVVRTVQRWR------ESKSHDERN  159 (173)
T ss_pred             HHHHHHhcCCceEEeecC--CChHHHHHHHHHHHHHhcCcccchhHHhc----cHHHHHHHHHHH------HHhhHHHHH
Confidence            999999999999999998  55577888999999999987766666664    466777776542      223344666


Q ss_pred             hhh
Q 010533          472 LVA  474 (508)
Q Consensus       472 L~~  474 (508)
                      |++
T Consensus       160 La~  162 (173)
T KOG4646|consen  160 LAS  162 (173)
T ss_pred             HHH
Confidence            654

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.23  E-value=0.00023  Score=72.85  Aligned_cols=225  Identities=14%  Similarity=0.178  Sum_probs=156.5

Q ss_pred             HHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh
Q 010533          196 CLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN  275 (508)
Q Consensus       196 al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~  275 (508)
                      |...|..++.-++-|..++.+.|+..++..|.+...+-.+|-+.+-+++-+ +-++...+.+-..+.|+.|+++++....
T Consensus       177 ~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlL-tFn~~~ae~~~~~~li~~L~~Ivk~~~K  255 (442)
T KOG2759|consen  177 AARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLL-TFNPHAAEKLKRFDLIQDLSDIVKESTK  255 (442)
T ss_pred             HHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHh-hcCHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            334444455555667899999999999999965567788998888888887 4566666666677999999999997644


Q ss_pred             -HHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCC--ChhHHHHHHHH-------HHHhhcCh-
Q 010533          276 -DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL--SSPSLISASIA-------LKAVAVND-  344 (508)
Q Consensus       276 -~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~--d~~~~~~a~~a-------L~~La~~~-  344 (508)
                       .+.+-.+++++|++.-.+.+-..   .+++..++..+. +.-++.|....  |+++..++-..       ...|+..| 
T Consensus       256 EKV~Rivlai~~Nll~k~~~~~~~---k~~~~~mv~~~v-~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDe  331 (442)
T KOG2759|consen  256 EKVTRIVLAIFRNLLDKGPDRETK---KDIASQMVLCKV-LKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDE  331 (442)
T ss_pred             HHHHHHHHHHHHHHhccCchhhHH---HHHHHHHHhcCc-hHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence             68888999999998433222211   134445555454 44455555433  55444332221       12233333 


Q ss_pred             -----------------------hhHhHHhhcC--CHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCchhHHHHHhC
Q 010533          345 -----------------------EICKSVAENG--GIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIEN  398 (508)
Q Consensus       345 -----------------------e~~~~i~e~G--gi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~  398 (508)
                                             ||..++-+..  .++.|+.+|+.+.|   +-+..-||.=|+... ..|+++..|.+.
T Consensus       332 Y~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~D---p~iL~VAc~DIge~Vr~yP~gk~vv~k~  408 (442)
T KOG2759|consen  332 YKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSND---PIILCVACHDIGEYVRHYPEGKAVVEKY  408 (442)
T ss_pred             HHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCC---CceeehhhhhHHHHHHhCchHhHHHHHh
Confidence                                   3333344332  36788999987543   367778888888876 479999999999


Q ss_pred             CcHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010533          399 GGMDKLIVVSARFSDDASVLQEVMSIITVLSL  430 (508)
Q Consensus       399 Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~  430 (508)
                      ||=+.++++|+  .+++.|+-+|+.|+-.|..
T Consensus       409 ggKe~vM~Lln--h~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  409 GGKERVMNLLN--HEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             chHHHHHHHhc--CCCchHHHHHHHHHHHHHh
Confidence            99999999998  6799999999999887754

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.21  E-value=2.5e-06  Score=59.44  Aligned_cols=41  Identities=29%  Similarity=0.398  Sum_probs=37.3

Q ss_pred             ChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhh
Q 010533          432 SPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA  474 (508)
Q Consensus       432 ~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~  474 (508)
                      +|++++.+++.|+++.|+++|+  +.+..++++|+|+|+||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~--~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLK--SPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTT--SSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHc--CCCHHHHHHHHHHHHHHhC
Confidence            5889999999999999999996  4678999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.18  E-value=0.0005  Score=74.82  Aligned_cols=346  Identities=16%  Similarity=0.182  Sum_probs=211.1

Q ss_pred             HHHHHhhcCCChhHHHHHHHHH---HhhccccCCCcc----ccCCCCCCC---------------CCC-hHHHHHHHHHH
Q 010533           73 VKENMEDLGMEPTEALQDAIQT---LSLQGVDLSGIV----KCVPGESSL---------------KDN-PLIQSLERLKQ  129 (508)
Q Consensus        73 v~eni~~~~m~p~eal~~aI~q---~~~qgvdLs~i~----~~~~~~~~~---------------~~~-~v~~~l~~L~~  129 (508)
                      +++-.+.+. ...+-.++++.+   +..+|.|.+...    +-.... +.               ..+ .+.-++..+..
T Consensus         9 l~~~~~~~~-~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~s~-~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~k   86 (526)
T PF01602_consen    9 LAKILNSFK-IDISKKKEALKKLIYLMMLGYDISFLFMEVIKLISSK-DLELKRLGYLYLSLYLHEDPELLILIINSLQK   86 (526)
T ss_dssp             HHHHHHCSS-THHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCSSS-SHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH
T ss_pred             HHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence            344555555 344455666666   377899876432    222211 10               111 12235556666


Q ss_pred             HhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcc
Q 010533          130 LDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS  209 (508)
Q Consensus       130 ~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~  209 (508)
                      -+.+.       +.....-||+.|..++.    ++..    + -.+|.+..+|.+   +++-++..|+-++..+....  
T Consensus        87 dl~~~-------n~~~~~lAL~~l~~i~~----~~~~----~-~l~~~v~~ll~~---~~~~VRk~A~~~l~~i~~~~--  145 (526)
T PF01602_consen   87 DLNSP-------NPYIRGLALRTLSNIRT----PEMA----E-PLIPDVIKLLSD---PSPYVRKKAALALLKIYRKD--  145 (526)
T ss_dssp             HHCSS-------SHHHHHHHHHHHHHH-S----HHHH----H-HHHHHHHHHHHS---SSHHHHHHHHHHHHHHHHHC--
T ss_pred             hhcCC-------CHHHHHHHHhhhhhhcc----cchh----h-HHHHHHHHHhcC---CchHHHHHHHHHHHHHhccC--
Confidence            55554       56666777777777763    3321    1 247788888887   46788988988888887543  


Q ss_pred             hhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 010533          210 TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLL  289 (508)
Q Consensus       210 ~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~  289 (508)
                       ++.+..+-++.+.++|..  .++.++..|+.++..+ ..++..-..+. ...+..|..++...++-.+..+...|..++
T Consensus       146 -p~~~~~~~~~~l~~lL~d--~~~~V~~~a~~~l~~i-~~~~~~~~~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~  220 (526)
T PF01602_consen  146 -PDLVEDELIPKLKQLLSD--KDPSVVSAALSLLSEI-KCNDDSYKSLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYA  220 (526)
T ss_dssp             -HCCHHGGHHHHHHHHTTH--SSHHHHHHHHHHHHHH-HCTHHHHTTHH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTST
T ss_pred             -HHHHHHHHHHHHhhhccC--CcchhHHHHHHHHHHH-ccCcchhhhhH-HHHHHHhhhcccccchHHHHHHHHHHHhcc
Confidence             222222257888888853  4799999999999988 22222110111 123344444444455555666777777776


Q ss_pred             CCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCC
Q 010533          290 TPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQ  369 (508)
Q Consensus       290 ~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~  369 (508)
                      ..+..         ...   ....++.+..+|++. ++.++..++.++..+...++..     ..+++.|+.+|.+.   
T Consensus       221 ~~~~~---------~~~---~~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~~~~~-----~~~~~~L~~lL~s~---  279 (526)
T PF01602_consen  221 PMEPE---------DAD---KNRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPSPELL-----QKAINPLIKLLSSS---  279 (526)
T ss_dssp             SSSHH---------HHH---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSSHHHH-----HHHHHHHHHHHTSS---
T ss_pred             cCChh---------hhh---HHHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcchHHH-----HhhHHHHHHHhhcc---
Confidence            54321         110   024578888888853 5678888889988888776622     23568899999842   


Q ss_pred             CcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHH
Q 010533          370 GNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAI  449 (508)
Q Consensus       370 ~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv  449 (508)
                       +..+.-.++..|..++...  .. .+.  .....+..+. +.++..++..++..|..++  +++|...+     ++.|.
T Consensus       280 -~~nvr~~~L~~L~~l~~~~--~~-~v~--~~~~~~~~l~-~~~d~~Ir~~~l~lL~~l~--~~~n~~~I-----l~eL~  345 (526)
T PF01602_consen  280 -DPNVRYIALDSLSQLAQSN--PP-AVF--NQSLILFFLL-YDDDPSIRKKALDLLYKLA--NESNVKEI-----LDELL  345 (526)
T ss_dssp             -SHHHHHHHHHHHHHHCCHC--HH-HHG--THHHHHHHHH-CSSSHHHHHHHHHHHHHH----HHHHHHH-----HHHHH
T ss_pred             -cchhehhHHHHHHHhhccc--ch-hhh--hhhhhhheec-CCCChhHHHHHHHHHhhcc--cccchhhH-----HHHHH
Confidence             2478899999999998654  22 223  3444445554 3678999999999999998  67887775     45566


Q ss_pred             HHHHcCCCcHHHHHHHHHHHHHhhhcCccchHH
Q 010533          450 QAMLKFPNAQQLQRSSCFMIRNLVARNPENSFC  482 (508)
Q Consensus       450 ~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~  482 (508)
                      ..+... .+..+++.++..|+.++.+.+.....
T Consensus       346 ~~l~~~-~d~~~~~~~i~~I~~la~~~~~~~~~  377 (526)
T PF01602_consen  346 KYLSEL-SDPDFRRELIKAIGDLAEKFPPDAEW  377 (526)
T ss_dssp             HHHHHC---HHHHHHHHHHHHHHHHHHGSSHHH
T ss_pred             HHHHhc-cchhhhhhHHHHHHHHHhccCchHHH
Confidence            667432 35679999999999999776554433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.18  E-value=0.0013  Score=67.69  Aligned_cols=264  Identities=13%  Similarity=0.106  Sum_probs=181.5

Q ss_pred             HHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCC---cc-------hhHHHhc
Q 010533          147 MGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDV---QS-------TETFRTG  216 (508)
Q Consensus       147 ~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~---~~-------~~~i~~~  216 (508)
                      -..++++.-++.   -|.---.+++.++|+.|+.||.+.   +.++....+..|-.|++.+   ++       -..+++.
T Consensus       102 hd~IQ~mhvlAt---~PdLYp~lveln~V~slL~LLgHe---NtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg  175 (536)
T KOG2734|consen  102 HDIIQEMHVLAT---MPDLYPILVELNAVQSLLELLGHE---NTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDG  175 (536)
T ss_pred             HHHHHHHHhhhc---ChHHHHHHHHhccHHHHHHHhcCC---CchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhc
Confidence            345667767765   455545889999999999999984   6788887888887777532   11       1355677


Q ss_pred             CChHHHHHHHhcCCCCH----HHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh--HHHHHHHHHHHHhcC
Q 010533          217 GGPKLLVNILIDGNEDP----EILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN--DSIQSLYDAIRVLLT  290 (508)
Q Consensus       217 ggi~~Lv~lL~~~~~~~----~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~--~~~~~A~~aL~~L~~  290 (508)
                      +.++.||.-+.+-.++.    .=...++.++-|+..-.+.....+++.|.+.-|+.-+.....  .-...|...|.-+..
T Consensus       176 ~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq  255 (536)
T KOG2734|consen  176 QVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQ  255 (536)
T ss_pred             cHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhc
Confidence            88899998887654322    233556677777777677777888888877776665543221  334445555554443


Q ss_pred             CCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCC--C------hhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHH
Q 010533          291 PDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL--S------SPSLISASIALKAVAVNDEICKSVAENGGIDALLRC  362 (508)
Q Consensus       291 ~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~--d------~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~l  362 (508)
                      +.+         ++.+.+....|+..|+.-+.-+.  |      .+..++...+|+.+....+++..+....|+....-+
T Consensus       256 ~s~---------e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lm  326 (536)
T KOG2734|consen  256 NSD---------ENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLM  326 (536)
T ss_pred             cCc---------hhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHH
Confidence            322         24445557789999988776432  2      256789999999988999999999999999887766


Q ss_pred             HhccCCCCcHHHHHHHHHHHHHhh-CCc--hhHHHHHhCCcHHHHHHHHhccC--------CCHHHHHHHHHHHHHHhc
Q 010533          363 IDDSGLQGNKTVARICCSLLSKLA-GSD--SNKSAIIENGGMDKLIVVSARFS--------DDASVLQEVMSIITVLSL  430 (508)
Q Consensus       363 L~~~~~~~~~~v~~~al~aL~~La-~~~--~~k~~Iv~~Ggl~~Lv~lL~~~~--------~~~~v~e~a~~aL~~La~  430 (508)
                      |+.  +   +...-.++.+|-... +.+  ++...+++.+|+..+..+.-+-+        .....-|+.|+.|+.|-.
T Consensus       327 lr~--K---k~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~  400 (536)
T KOG2734|consen  327 LRE--K---KVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR  400 (536)
T ss_pred             HHH--H---HHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence            664  1   145567788888765 444  67788999999998888654211        224577889999988753

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.07  E-value=0.0011  Score=72.16  Aligned_cols=307  Identities=12%  Similarity=0.102  Sum_probs=186.9

Q ss_pred             HHHHHHHHHHhCCCCChhhHHHHHH-CCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcC----ChHH
Q 010533          147 MGLFDKLIELCGGNEGSVNAAVATK-NGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGG----GPKL  221 (508)
Q Consensus       147 ~~al~~L~~lc~~~~~~~~r~~i~~-~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~g----gi~~  221 (508)
                      ...|..|.-+|.. -+|+  ....+ +.++-.++.=..+.. .+..+...|+++|..-+.-.  +..|-.++    ..+.
T Consensus       148 ~~slealGyice~-i~pe--vl~~~sN~iLtaIv~gmrk~e-~s~~vRLaa~~aL~nsLef~--~~nF~~E~ern~iMqv  221 (859)
T KOG1241|consen  148 ESSLEALGYICED-IDPE--VLEQQSNDILTAIVQGMRKEE-TSAAVRLAALNALYNSLEFT--KANFNNEMERNYIMQV  221 (859)
T ss_pred             HHHHHHHHHHHcc-CCHH--HHHHHHhHHHHHHHhhccccC-CchhHHHHHHHHHHHHHHHH--HHhhccHhhhceeeee
Confidence            5577888888874 2343  44444 333444444333322 46788888888887654211  00111111    1233


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCC-cchhhhh-
Q 010533          222 LVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPD-DDQVVAS-  299 (508)
Q Consensus       222 Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~d-d~r~~~~-  299 (508)
                      +++.=  .+++.+++..++.+|-.+.+-+-+.-+..|+......-+..+++.++++.-.+...=+++|..+ |.-.+++ 
T Consensus       222 vcEat--q~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e  299 (859)
T KOG1241|consen  222 VCEAT--QSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGE  299 (859)
T ss_pred             eeecc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33332  2578999999999999987766556666677667777888899877766555655555555211 1111111 


Q ss_pred             --------hcchHHHHHHhcCCHHHHHHHHhcCC-Ch-----hHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhc
Q 010533          300 --------QVYGYARRFAKIGIARALVHSLHAGL-SS-----PSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDD  365 (508)
Q Consensus       300 --------~a~~~~~~i~~~g~i~~Lv~lL~~~~-d~-----~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~  365 (508)
                              .++-+++.-. .+.+|.|+++|.... |.     +.-..+..+|.-++.       .+....++.++.++..
T Consensus       300 ~~d~~~~p~~~~fa~~a~-~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~-------~~~D~Iv~~Vl~Fiee  371 (859)
T KOG1241|consen  300 AVDQGLPPSSKYFARQAL-QDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQ-------CVGDDIVPHVLPFIEE  371 (859)
T ss_pred             HhhcCCCchhhHHHHHHH-hHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHH-------HhcccchhhhHHHHHH
Confidence                    1122233222 267899999998743 11     222333333322222       2223356677777776


Q ss_pred             cCCCCcHHHHHHHHHHHHHhh-CCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHH-HHHhcC
Q 010533          366 SGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAA-RAMEAG  443 (508)
Q Consensus       366 ~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~-~i~~~G  443 (508)
                      +-..+|..=.+.+.-+++.+- |.+..+..=+..+++|.++.+|.  .++-.++..+.|+|..++...|+.+. .....+
T Consensus       372 ~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~--D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~  449 (859)
T KOG1241|consen  372 NIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMS--DPSLWVKDTAAWTLGRIADFLPEAIINQELLQS  449 (859)
T ss_pred             hcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhc--CchhhhcchHHHHHHHHHhhchhhcccHhhhhH
Confidence            655666677778888888765 55555544445589999999998  55677889999999999977775433 233345


Q ss_pred             cHHHHHHHHHcCCCcHHHHHHHHHHHHHhhh
Q 010533          444 SGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA  474 (508)
Q Consensus       444 ~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~  474 (508)
                      .+..+++-|..   .+.|-.++|||+-+|+.
T Consensus       450 ~l~~l~~gL~D---ePrva~N~CWAf~~Lae  477 (859)
T KOG1241|consen  450 KLSALLEGLND---EPRVASNVCWAFISLAE  477 (859)
T ss_pred             HHHHHHHHhhh---CchHHHHHHHHHHHHHH
Confidence            56666666654   46778899999999983

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.04  E-value=9.3e-05  Score=76.32  Aligned_cols=172  Identities=17%  Similarity=0.220  Sum_probs=130.6

Q ss_pred             HHHHHHcCcHHHHHHHHhcCCh--HHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHH
Q 010533          254 KESYMELKIDELILEILSRQRN--DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLI  331 (508)
Q Consensus       254 r~~i~~~G~i~~Lv~lL~~~~~--~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~  331 (508)
                      ++.|...|++..|+.++..++.  .+...+...|-.+...           +|...++.-| +..++.+.+....++...
T Consensus       173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a-----------eN~d~va~~~-~~~Il~lAK~~e~~e~aR  240 (832)
T KOG3678|consen  173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA-----------ENRDRVARIG-LGVILNLAKEREPVELAR  240 (832)
T ss_pred             hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh-----------hhhhHHhhcc-chhhhhhhhhcCcHHHHH
Confidence            4566778999999999998765  4566677777765532           2334455444 667777766544567788


Q ss_pred             HHHHHHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh--CCchhHHHHHhCCcHHHHHHHH
Q 010533          332 SASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA--GSDSNKSAIIENGGMDKLIVVS  408 (508)
Q Consensus       332 ~a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La--~~~~~k~~Iv~~Ggl~~Lv~lL  408 (508)
                      .+++.|.+|-. .++.|+++++.||++.++-..+..    ++.+++.|.-+|+|++  +..+.+..|++..+.+.|.-+-
T Consensus       241 ~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt----~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA  316 (832)
T KOG3678|consen  241 SVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRT----DPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA  316 (832)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHhhcccchheeecccC----CHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh
Confidence            88889999876 778999999999999988766653    3589999999999988  4668899999998888888876


Q ss_pred             hccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCc
Q 010533          409 ARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGS  444 (508)
Q Consensus       409 ~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~  444 (508)
                      .  +.+.-.+-+||-+++.|+. +.+.-..+...|-
T Consensus       317 ~--skDel~R~~AClAV~vlat-~KE~E~~VrkS~T  349 (832)
T KOG3678|consen  317 F--SKDELLRLHACLAVAVLAT-NKEVEREVRKSGT  349 (832)
T ss_pred             c--chHHHHHHHHHHHHhhhhh-hhhhhHHHhhccc
Confidence            6  6677888999999999985 5555555544443

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.95  E-value=3.2e-05  Score=64.88  Aligned_cols=69  Identities=22%  Similarity=0.239  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHhc
Q 010533          418 LQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMV  486 (508)
Q Consensus       418 ~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~  486 (508)
                      +...+.+|+|||.+++.++..+.+.||++.++........+|-+++.|.|+||||+..|+++++.+.+-
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L   71 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL   71 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            566789999999999999999999999999999987777889999999999999999999998877643

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=97.89  E-value=0.0041  Score=67.06  Aligned_cols=227  Identities=15%  Similarity=0.124  Sum_probs=140.7

Q ss_pred             CCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHh
Q 010533          231 EDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK  310 (508)
Q Consensus       231 ~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~  310 (508)
                      .+......||.++.+.+..-..-|..+-...++.+|+.+|..+...+...+.++|.||...      ||   .+...+.+
T Consensus       389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVme------fs---~~kskfl~  459 (678)
T KOG1293|consen  389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVME------FS---NLKSKFLR  459 (678)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhh------cc---cHHHHHHH
Confidence            4566777777776665432222333344567899999999776667888899999999853      22   24456778


Q ss_pred             cCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhh--HhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-C
Q 010533          311 IGIARALVHSLHAGLSSPSLISASIALKAVAVNDEI--CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-G  387 (508)
Q Consensus       311 ~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~--~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La-~  387 (508)
                      .|||+.|...+.+. +.+++....|+|+++..+.+.  +......=+...++.+..+    +++.|+++|+.+|+||. +
T Consensus       460 ~ngId~l~s~~~~~-~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd----~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  460 NNGIDILESMLTDP-DFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLIND----PDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             cCcHHHHHHHhcCC-CchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhC----CCHHHHHHHHHHHHHhhcC
Confidence            99999999998875 678899999999999986544  3333333334555655554    34689999999999995 4


Q ss_pred             CchhHHHHHhCCc--HHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHhcCcHHHHHH------HHHcCCCc
Q 010533          388 SDSNKSAIIENGG--MDKLIVVSARFSDDASVLQEVMSIITVLSLRSP-ENAARAMEAGSGDLAIQ------AMLKFPNA  458 (508)
Q Consensus       388 ~~~~k~~Iv~~Gg--l~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~-~~~~~i~~~G~i~~Lv~------~L~~h~~~  458 (508)
                      ..+-.+-+++.-+  +..+...++ ......+..+...-+.++..... ++..++  .|..+.++-      -++.-+..
T Consensus       535 ~~~svdfll~~~~~~ld~i~l~lk-~a~~~pi~ie~~~~~~~l~~~~d~~~~~am--~~~fk~lvl~~e~~~n~~q~s~~  611 (678)
T KOG1293|consen  535 SRKSVDFLLEKFKDVLDKIDLQLK-IAIGSPILIEFLAKKMRLLNPLDTQQKKAM--EGIFKILVLLAEVNENKKQLSIE  611 (678)
T ss_pred             cHHHHHHHHHhhhHHHHHHHHHHh-hccCCceehhhHHHHHHhccchhHHHHHHH--HHHHHHHHHHHHHHHHHHhhccH
Confidence            4455666665433  333333443 33333344444554444443332 223322  233333332      22333334


Q ss_pred             HHHHHHHHHHHHHhhh
Q 010533          459 QQLQRSSCFMIRNLVA  474 (508)
Q Consensus       459 ~~vq~~A~~aL~nL~~  474 (508)
                      ....-++.|-+.|+..
T Consensus       612 ~qls~~~~~~iinl~~  627 (678)
T KOG1293|consen  612 QQLSLNIMSEIINLTT  627 (678)
T ss_pred             HHHHHHHHHHHHhccC
Confidence            4555678899999875

>PF05536 Neurochondrin: Neurochondrin

Probab=97.89  E-value=0.021  Score=62.49  Aligned_cols=142  Identities=18%  Similarity=0.152  Sum_probs=104.2

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCC-CChhhHHHHHHCCcHHHHHHHHhcccC----CCHHHHHHHH
Q 010533          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGN-EGSVNAAVATKNGGVELVCSICYKMRC----GSKRVLDSCL  197 (508)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~-~~~~~r~~i~~~Gavp~Lv~lL~~~~~----~~~~~~~~al  197 (508)
                      .+++....+.+.       +.+....+|--+.++|+.. .+...+..+.++=+.+.|-+||++...    +....+.-++
T Consensus         6 ~l~~c~~lL~~~-------~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lav   78 (543)
T PF05536_consen    6 SLEKCLSLLKSA-------DDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAV   78 (543)
T ss_pred             HHHHHHHHhccC-------CcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHH
Confidence            456666666554       6677888899999999872 122334456677778999999987542    2346677789


Q ss_pred             HHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcC
Q 010533          198 KTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ  273 (508)
Q Consensus       198 ~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~  273 (508)
                      ..|+.++.+.+....---.+-||.|++++...+ +.++...++.+|..++ .++..++.+++.|+++.|.+++.++
T Consensus        79 svL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s-~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~~  152 (543)
T PF05536_consen   79 SVLAAFCRDPELASSPQMVSRIPLLLEILSSSS-DLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPNQ  152 (543)
T ss_pred             HHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCC-chhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHhC
Confidence            999999886432211111346999999998643 3688999999999997 6788999999999999999999874

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=97.88  E-value=0.0011  Score=68.56  Aligned_cols=181  Identities=13%  Similarity=0.175  Sum_probs=133.8

Q ss_pred             hHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-HHHHHHHHHHHHhc
Q 010533          211 ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLL  289 (508)
Q Consensus       211 ~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~~L~  289 (508)
                      +.++..||...|++++....-+..+...+.++|-.+.  ..+|++.++..| +..++.+-+.... +..+..+..|.+|-
T Consensus       174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~--~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF  250 (832)
T KOG3678|consen  174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL--VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF  250 (832)
T ss_pred             hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH--hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence            5778889999999999865555667888999998874  357999998777 4555555443322 66777777887774


Q ss_pred             CCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc--ChhhHhHHhhcCCHHHHHHHHhccC
Q 010533          290 TPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV--NDEICKSVAENGGIDALLRCIDDSG  367 (508)
Q Consensus       290 ~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~--~~e~~~~i~e~Ggi~~Lv~lL~~~~  367 (508)
                               .++.+.+..+++.|+++.++--.+. +++.++..++.+|+|++.  ..+..+++++.-.-+-|.-+-.+ .
T Consensus       251 ---------KHSeet~~~Lvaa~~lD~vl~~~rR-t~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~s-k  319 (832)
T KOG3678|consen  251 ---------KHSEETCQRLVAAGGLDAVLYWCRR-TDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFS-K  319 (832)
T ss_pred             ---------hhhHHHHHHHHhhcccchheeeccc-CCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcc-h
Confidence                     3456778889999999998766554 378999999999999886  45667888887776666644332 2


Q ss_pred             CCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcH---HHHHHHH
Q 010533          368 LQGNKTVARICCSLLSKLAGSDSNKSAIIENGGM---DKLIVVS  408 (508)
Q Consensus       368 ~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl---~~Lv~lL  408 (508)
                      |   .-+.-.||-+...|+.+.+.-..+.+.|-+   ++++..+
T Consensus       320 D---el~R~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~  360 (832)
T KOG3678|consen  320 D---ELLRLHACLAVAVLATNKEVEREVRKSGTLALVEPLVASL  360 (832)
T ss_pred             H---HHHHHHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhcc
Confidence            2   256678999999999999988888888764   4444444

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.84  E-value=0.0024  Score=68.19  Aligned_cols=265  Identities=12%  Similarity=0.100  Sum_probs=162.1

Q ss_pred             HHHHhhcCCcchhHHHhcCChHHHHHHH--------hcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHH
Q 010533          199 TMALLVHDVQSTETFRTGGGPKLLVNIL--------IDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEIL  270 (508)
Q Consensus       199 aLa~l~~~~~~~~~i~~~ggi~~Lv~lL--------~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL  270 (508)
                      +|-.+..+...-..+....|+..|+++=        .....+..+...|+++|.|+...++..|+.+++.|+.+.+++.|
T Consensus         4 ~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~L   83 (446)
T PF10165_consen    4 TLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERL   83 (446)
T ss_pred             HHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHH
Confidence            3333333333334444444555554443        12346789999999999999999999999999999999999999


Q ss_pred             hcC-----ChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHH-hcCCHHHHHHHHhcCC----------------Chh
Q 010533          271 SRQ-----RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-KIGIARALVHSLHAGL----------------SSP  328 (508)
Q Consensus       271 ~~~-----~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~-~~g~i~~Lv~lL~~~~----------------d~~  328 (508)
                      +.+     +.++.--.++.|+-++....         +..+.++ +.+++..|+..|..+-                +..
T Consensus        84 k~~~~~~~~~d~~Fl~~RLLFLlTa~~~---------~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~  154 (446)
T PF10165_consen   84 KNYSDSSQPSDVEFLDSRLLFLLTALRP---------DDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEE  154 (446)
T ss_pred             HcccccCCChhHHHHHHHHHHHHhcCCh---------hHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHH
Confidence            986     34666678888887775331         1233455 6688888887766421                123


Q ss_pred             HHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhcc-----CCCCcHHHHHHHHHHHHHhhCCchhHHHH--------
Q 010533          329 SLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDS-----GLQGNKTVARICCSLLSKLAGSDSNKSAI--------  395 (508)
Q Consensus       329 ~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~-----~~~~~~~v~~~al~aL~~La~~~~~k~~I--------  395 (508)
                      .+.+++.+++|+.........-.+.+.++.|+.++...     .+.+.......+..+|.++-  ......+        
T Consensus       155 ~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlp--l~~~~~l~~~~~~~~  232 (446)
T PF10165_consen  155 ALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLP--LECLDSLLSPKFQQS  232 (446)
T ss_pred             HHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCC--hHHHhhhhcccCCcc
Confidence            46778888888876322211112344566666665543     11222356677777777762  1111111        


Q ss_pred             ------HhCCcHHHHHHHHhc----cCCC--HHHHHHHHHHHHHHhcCChhhHHHHHhc----------------CcHHH
Q 010533          396 ------IENGGMDKLIVVSAR----FSDD--ASVLQEVMSIITVLSLRSPENAARAMEA----------------GSGDL  447 (508)
Q Consensus       396 ------v~~Ggl~~Lv~lL~~----~~~~--~~v~e~a~~aL~~La~~~~~~~~~i~~~----------------G~i~~  447 (508)
                            .....+..|+.+|.+    +...  .....-.+.+|..++..+...++.+...                ..-..
T Consensus       233 ~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~r  312 (446)
T PF10165_consen  233 SLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSR  312 (446)
T ss_pred             cccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHH
Confidence                  112245677777753    2211  2345566778888886555544444421                23457


Q ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHhhhcC
Q 010533          448 AIQAMLKFPNAQQLQRSSCFMIRNLVARN  476 (508)
Q Consensus       448 Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~  476 (508)
                      |+++| +++. ..++..++..|..|+..+
T Consensus       313 LlrLm-t~~~-~~~k~~vaellf~Lc~~d  339 (446)
T PF10165_consen  313 LLRLM-TSPD-PQLKDAVAELLFVLCKED  339 (446)
T ss_pred             HHHHh-CCCC-chHHHHHHHHHHHHHhhh
Confidence            88888 4665 788888888888887654

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.79  E-value=0.00011  Score=61.68  Aligned_cols=68  Identities=16%  Similarity=0.155  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc
Q 010533          375 ARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEA  442 (508)
Q Consensus       375 ~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~  442 (508)
                      ....+.+|++|+. ++.+++.|.+.||+|.+++.-.--..+|-++|+|.++|.+||.+|++|++.|.+.
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L   71 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL   71 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            4577889999985 7899999999999999999876445579999999999999999999999887654

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.79  E-value=0.024  Score=64.03  Aligned_cols=296  Identities=13%  Similarity=0.109  Sum_probs=195.8

Q ss_pred             HHHHHHHHHHHHHhCCCCChhhHH----HHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCCh
Q 010533          144 NEMMGLFDKLIELCGGNEGSVNAA----VATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGP  219 (508)
Q Consensus       144 ~~~~~al~~L~~lc~~~~~~~~r~----~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi  219 (508)
                      +.+.-+|.+|+++.+.  +|.-..    ...--|-.|.+..+|...  .+..++..|++.+..++...+=-..+...|.+
T Consensus      1740 ~~v~m~LtAL~Nli~~--nPdlasvfgSe~~lig~F~l~~~~lr~~--~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL 1815 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSA--NPDLASVFGSEILLIGNFPLLITYLRCR--KHPKLQILALQVILLATANKECVTDLATCNVL 1815 (2235)
T ss_pred             HHHHHHHHHHHHHHhh--CcchhhhccchhhhhcccHHHHHHHHHc--CCchHHHHHHHHHHHHhcccHHHHHHHhhhHH
Confidence            4567789999999886  553221    222246788888888776  46678888999998877654333667788888


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCc--chh
Q 010533          220 KLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDD--DQV  296 (508)
Q Consensus       220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~~L~~~dd--~r~  296 (508)
                      ..|+.+|.+   -+...+.++.+|..+++..+-.| .-++.|++..+..++-..+. .....++..|..|..+.-  +|+
T Consensus      1816 ~~LL~lLHS---~PS~R~~vL~vLYAL~S~~~i~k-eA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV 1891 (2235)
T KOG1789|consen 1816 TTLLTLLHS---QPSMRARVLDVLYALSSNGQIGK-EALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRV 1891 (2235)
T ss_pred             HHHHHHHhc---ChHHHHHHHHHHHHHhcCcHHHH-HHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCce
Confidence            888888854   46778888889988876554444 45677888888888876544 333445666666664431  122


Q ss_pred             h-------------------------------------------------------------------------h-h--h
Q 010533          297 V-------------------------------------------------------------------------A-S--Q  300 (508)
Q Consensus       297 ~-------------------------------------------------------------------------~-~--~  300 (508)
                      .                                                                         + |  .
T Consensus      1892 ~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~E 1971 (2235)
T KOG1789|consen 1892 TITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSE 1971 (2235)
T ss_pred             eeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhh
Confidence            0                                                                         0 0  0


Q ss_pred             -------cchHHHHHHh-------------cCCHHHHHHHHhcCC-ChhHHHHHHHHHHH-hhcChhhHhHHhhcCCHHH
Q 010533          301 -------VYGYARRFAK-------------IGIARALVHSLHAGL-SSPSLISASIALKA-VAVNDEICKSVAENGGIDA  358 (508)
Q Consensus       301 -------a~~~~~~i~~-------------~g~i~~Lv~lL~~~~-d~~~~~~a~~aL~~-La~~~e~~~~i~e~Ggi~~  358 (508)
                             ..-+.|.++.             .|.++.+.++|.... ....+.-...++-. +...+.....+-..|-+|.
T Consensus      1972 a~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK 2051 (2235)
T KOG1789|consen 1972 ADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPK 2051 (2235)
T ss_pred             hccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHH
Confidence                   0011222221             123455556665422 11222222333333 3345666677888899999


Q ss_pred             HHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCh-hhHH
Q 010533          359 LLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSP-ENAA  437 (508)
Q Consensus       359 Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~-~~~~  437 (508)
                      ++..|...+.    .+=..|+.+|..|+.+.-+.+++.....+..++..|.+   .+....-||-+|-.+..++. +..+
T Consensus      2052 ~~~Am~~~n~----s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK---~~~~~GLA~EalkR~~~r~~~eLVA 2124 (2235)
T KOG1789|consen 2052 FCTAMCLQNT----SAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKK---QPSLMGLAAEALKRLMKRNTGELVA 2124 (2235)
T ss_pred             HHHHHHhcCC----cCcHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHh---cchHHHHHHHHHHHHHHHhHHHHHH
Confidence            9999975432    45579999999999999999999988888889999873   34455678888888876654 4466


Q ss_pred             HHHhcCcHHHHHHHHHc
Q 010533          438 RAMEAGSGDLAIQAMLK  454 (508)
Q Consensus       438 ~i~~~G~i~~Lv~~L~~  454 (508)
                      +.+..|.+|.|+++|..
T Consensus      2125 Q~LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2125 QMLKCGLVPYLLQLLDS 2141 (2235)
T ss_pred             HHhccCcHHHHHHHhcc
Confidence            67788999999999853

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.79  E-value=0.0037  Score=65.11  Aligned_cols=299  Identities=13%  Similarity=0.079  Sum_probs=192.2

Q ss_pred             HHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCC
Q 010533          152 KLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNE  231 (508)
Q Consensus       152 ~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~  231 (508)
                      .|-++.++  .+.-+....-.-..+.+..++-+   ++.++...++..+-.+..+...-..+.+.+.--.++..|.+...
T Consensus         6 ~Lv~l~~~--~p~l~~~~~~~~~~~~i~~~lL~---~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~   80 (371)
T PF14664_consen    6 DLVDLLKR--HPTLKYDLVLSFFGERIQCMLLS---DSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNK   80 (371)
T ss_pred             HHHHHHHh--CchhhhhhhHHHHHHHHHHHHCC---CcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCC
Confidence            34444444  44444444433345555543333   24889999999999998887666777888888889999987766


Q ss_pred             CHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhc
Q 010533          232 DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKI  311 (508)
Q Consensus       232 ~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~  311 (508)
                      +..-.++|++.++.+...... .+ .+-.|++..|+.+....++.....+..+|.-|+..+            -+.++++
T Consensus        81 ~~~ER~QALkliR~~l~~~~~-~~-~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~------------P~lv~~~  146 (371)
T PF14664_consen   81 NDVEREQALKLIRAFLEIKKG-PK-EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLN------------PELVAEC  146 (371)
T ss_pred             ChHHHHHHHHHHHHHHHhcCC-cc-cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC------------HHHHHHc
Confidence            777788999999987644221 11 134578889999998876666666778888887644            1345589


Q ss_pred             CCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccC---CCCcH--HHHHHHHHHHHHh-
Q 010533          312 GIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSG---LQGNK--TVARICCSLLSKL-  385 (508)
Q Consensus       312 g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~---~~~~~--~v~~~al~aL~~L-  385 (508)
                      ||+..|++.+-+++ .++.+.++.++-++...+...+.+...--++.++.-+.+..   ...+.  +....+..++..+ 
T Consensus       147 gG~~~L~~~l~d~~-~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~L  225 (371)
T PF14664_consen  147 GGIRVLLRALIDGS-FSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLL  225 (371)
T ss_pred             CCHHHHHHHHHhcc-HhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHH
Confidence            99999999998854 33667888899888888877776665445677777766541   11111  2334444444333 


Q ss_pred             hCCchhHH-HHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhc-------------------CCh------------
Q 010533          386 AGSDSNKS-AIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL-------------------RSP------------  433 (508)
Q Consensus       386 a~~~~~k~-~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~-------------------~~~------------  433 (508)
                      -+.+..-. ..-+..|+..|++.|.  .+++.+++.....+..+-.                   +..            
T Consensus       226 rsW~GLl~l~~~~~~~lksLv~~L~--~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e  303 (371)
T PF14664_consen  226 RSWPGLLYLSMNDFRGLKSLVDSLR--LPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAE  303 (371)
T ss_pred             hcCCceeeeecCCchHHHHHHHHHc--CCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccc
Confidence            22221110 0111246778888887  5667787777776665320                   000            


Q ss_pred             -------------h--------hHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhh
Q 010533          434 -------------E--------NAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV  473 (508)
Q Consensus       434 -------------~--------~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~  473 (508)
                                   .        ....++++|.++.|+++.... .+..+.+.|...|.++-
T Consensus       304 ~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~li~~~-~d~~l~~KAtlLL~elL  363 (371)
T PF14664_consen  304 AKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVELIESS-EDSSLSRKATLLLGELL  363 (371)
T ss_pred             cccccCccccccccHHHHHHHHHHHHHHHcChHHHHHHHHhcC-CCchHHHHHHHHHHHHH
Confidence                         0        012456788899999988754 35677888888887653

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.78  E-value=0.012  Score=58.33  Aligned_cols=278  Identities=10%  Similarity=0.100  Sum_probs=151.5

Q ss_pred             HHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHh--cCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhH
Q 010533          177 LVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRT--GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVK  254 (508)
Q Consensus       177 ~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~--~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr  254 (508)
                      -|+.+|.+.   ++.++..|...+..++.. .. ..+..  ..-++.+.+++....  +  .+.|+.++.|++ ..+..|
T Consensus         7 elv~ll~~~---sP~v~~~AV~~l~~lt~~-~~-~~~~~~~~~~lk~l~qL~~~~~--~--~~~a~~alVnls-q~~~l~   76 (353)
T KOG2973|consen    7 ELVELLHSL---SPPVRKAAVEHLLGLTGR-GL-QSLSKYSEALLKDLTQLLKDLD--P--AEPAATALVNLS-QKEELR   76 (353)
T ss_pred             HHHHHhccC---ChHHHHHHHHHHhhcccc-ch-hhhccchhhhHHHHHHHccCcc--c--ccHHHHHHHHHH-hhHHHH
Confidence            356666663   556777777767666654 11 12221  234666777765321  1  667888888885 456677


Q ss_pred             HHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCCh-hHHHHH
Q 010533          255 ESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSS-PSLISA  333 (508)
Q Consensus       255 ~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~-~~~~~a  333 (508)
                      +.++.. .+..++..+.......-...|.+|.||+.+|+.-..+-...+..   .+.|.+.........+.+. .-....
T Consensus        77 ~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~---~~~~lm~l~~~~~d~~~n~~a~f~yl  152 (353)
T KOG2973|consen   77 KKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEK---KDSGLMRLARAFCDKSYNAYAEFHYL  152 (353)
T ss_pred             HHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccc---cccchHHHHHHHhCcccccccchhHH
Confidence            777765 77777777766544566778999999999886532211000000   0133444444444433331 223445


Q ss_pred             HHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHH-HHHHHHHHHhhCCchhHHHHHhCCcHHHHH-------
Q 010533          334 SIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVA-RICCSLLSKLAGSDSNKSAIIENGGMDKLI-------  405 (508)
Q Consensus       334 ~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~-~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv-------  405 (508)
                      +..+.+|+..+.-+..+.+..-+  +.+-+-......+ .|. ....+.|+|++-...+...+.+ -.+..|.       
T Consensus       153 A~vf~nls~~~~gR~l~~~~k~~--p~~kll~ft~~~s-~vRr~GvagtlkN~cFd~~~h~~lL~-e~~~lLp~iLlPla  228 (353)
T KOG2973|consen  153 APVFANLSQFEAGRKLLLEPKRF--PDQKLLPFTSEDS-QVRRGGVAGTLKNCCFDAKLHEVLLD-ESINLLPAILLPLA  228 (353)
T ss_pred             HHHHHHHhhhhhhhhHhcchhhh--hHhhhhcccccch-hhhccchHHHHHhhhccchhHHHHhc-chHHHHHHHHhhcC
Confidence            55667777655444444433211  1111111111111 222 3446666676654444444444 2222222       


Q ss_pred             -----------------HHHh---ccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHH
Q 010533          406 -----------------VVSA---RFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSS  465 (508)
Q Consensus       406 -----------------~lL~---~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A  465 (508)
                                       ++|-   .--.++.++..-+-+|.-||. ...-+..+.+.|+.+ +++-+.++..++++ +.+
T Consensus       229 gpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T~~GRe~lR~kgvYp-ilRElhk~e~ded~-~~a  305 (353)
T KOG2973|consen  229 GPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-TRAGREVLRSKGVYP-ILRELHKWEEDEDI-REA  305 (353)
T ss_pred             CccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-hhHhHHHHHhcCchH-HHHHHhcCCCcHHH-HHH
Confidence                             3331   112367899999999999996 445566666665554 55666566677776 567


Q ss_pred             HHHHHHhhhc
Q 010533          466 CFMIRNLVAR  475 (508)
Q Consensus       466 ~~aL~nL~~~  475 (508)
                      |.-+.++-.+
T Consensus       306 ce~vvq~Lv~  315 (353)
T KOG2973|consen  306 CEQVVQMLVR  315 (353)
T ss_pred             HHHHHHHHHh
Confidence            7766666554

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.76  E-value=0.0015  Score=70.36  Aligned_cols=316  Identities=12%  Similarity=0.075  Sum_probs=176.0

Q ss_pred             HHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHH----CCcHHHHHHHHhcccCCCHHHHHHH
Q 010533          121 IQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATK----NGGVELVCSICYKMRCGSKRVLDSC  196 (508)
Q Consensus       121 ~~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~----~Gavp~Lv~lL~~~~~~~~~~~~~a  196 (508)
                      .+.+..|.+.|.+.       |...+-.|+.+|.+.|..  +.+.-..-.-    .=.+|.++.+.+++   .+.++..|
T Consensus       127 pelLp~L~~~L~s~-------d~n~~EgA~~AL~KIcED--sa~~lds~~~~rpl~~mipkfl~f~~h~---spkiRs~A  194 (885)
T KOG2023|consen  127 PELLPQLCELLDSP-------DYNTCEGAFGALQKICED--SAQFLDSDVLTRPLNIMIPKFLQFFKHP---SPKIRSHA  194 (885)
T ss_pred             hhHHHHHHHHhcCC-------cccccchhHHHHHHHHhh--hHHHHhhhcccCchHHhHHHHHHHHhCC---ChhHHHHH
Confidence            46788888888876       666777889999999975  3321111000    12478888888875   56666666


Q ss_pred             HHHHHHhhcCCcchhHHHhcCChHHHHHHH--hcCCCCHHHHHHHHHHHHHhhcCChhhHHHHH--HcCcHHHHHHHHhc
Q 010533          197 LKTMALLVHDVQSTETFRTGGGPKLLVNIL--IDGNEDPEILNSGFAVVAASATGNEVVKESYM--ELKIDELILEILSR  272 (508)
Q Consensus       197 l~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL--~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~--~~G~i~~Lv~lL~~  272 (508)
                      +..+....-.+  ...+..  .+...++.|  ..+.++++|+...|+++..+..-.+   +.++  -.++++.++..-+.
T Consensus       195 ~~cvNq~i~~~--~qal~~--~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~---dkl~phl~~IveyML~~tqd  267 (885)
T KOG2023|consen  195 VGCVNQFIIIQ--TQALYV--HIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRP---DKLVPHLDNIVEYMLQRTQD  267 (885)
T ss_pred             HhhhhheeecC--cHHHHH--HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcH---HhcccchHHHHHHHHHHccC
Confidence            66554433222  112211  133333332  1245789999999999888753222   3344  22567777776666


Q ss_pred             CChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCC-ChhHHHH-------------------
Q 010533          273 QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SSPSLIS-------------------  332 (508)
Q Consensus       273 ~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~-d~~~~~~-------------------  332 (508)
                      +++++--+||.....++....++....   .|..     ..||.|++-|.=.. |..++.+                   
T Consensus       268 ~dE~VALEACEFwla~aeqpi~~~~L~---p~l~-----kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfh  339 (885)
T KOG2023|consen  268 VDENVALEACEFWLALAEQPICKEVLQ---PYLD-----KLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFH  339 (885)
T ss_pred             cchhHHHHHHHHHHHHhcCcCcHHHHH---HHHH-----HHHHHHHccCccccccHHHhcCccccccCCchhhhccchhh
Confidence            666888889999999987654432211   1222     34566555433111 1111110                   


Q ss_pred             ---------------------------HHHHHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Q 010533          333 ---------------------------ASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK  384 (508)
Q Consensus       333 ---------------------------a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~  384 (508)
                                                 .-|-|+..+. .=+....|.....++.++-+|+.+-.++...+++.+.-+|+.
T Consensus       340 ksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGA  419 (885)
T KOG2023|consen  340 KSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGA  419 (885)
T ss_pred             hchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHH
Confidence                                       0011111110 001111222233456666666655444557888999999999


Q ss_pred             hhC-C-chhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcC---ChhhHHHHHhcCcHHHHHHHHHc-CCCc
Q 010533          385 LAG-S-DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLR---SPENAARAMEAGSGDLAIQAMLK-FPNA  458 (508)
Q Consensus       385 La~-~-~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~---~~~~~~~i~~~G~i~~Lv~~L~~-h~~~  458 (508)
                      +|. . +..-..+-  .-+|.|+++|.  ...+-|+.-+||+|..-+.-   .+  ....    ..+.+-.++++ -.++
T Consensus       420 IAEGcM~g~~p~Lp--eLip~l~~~L~--DKkplVRsITCWTLsRys~wv~~~~--~~~~----f~pvL~~ll~~llD~N  489 (885)
T KOG2023|consen  420 IAEGCMQGFVPHLP--ELIPFLLSLLD--DKKPLVRSITCWTLSRYSKWVVQDS--RDEY----FKPVLEGLLRRLLDSN  489 (885)
T ss_pred             HHHHHhhhcccchH--HHHHHHHHHhc--cCccceeeeeeeeHhhhhhhHhcCC--hHhh----hHHHHHHHHHHHhccc
Confidence            983 1 11111121  24677888887  66789999999999986521   11  1111    22333333222 1246


Q ss_pred             HHHHHHHHHHHHHhh
Q 010533          459 QQLQRSSCFMIRNLV  473 (508)
Q Consensus       459 ~~vq~~A~~aL~nL~  473 (508)
                      .+||+.||.|..-+-
T Consensus       490 K~VQEAAcsAfAtle  504 (885)
T KOG2023|consen  490 KKVQEAACSAFATLE  504 (885)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            899999999988764

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.75  E-value=0.0095  Score=68.03  Aligned_cols=412  Identities=13%  Similarity=0.101  Sum_probs=226.4

Q ss_pred             cCCchhhhhhhhhhcccCCCCCCCCCCcCCCcccccccCCcc-CCCCc-------chhhhhhHHHHHHHHHHHHhhcCCC
Q 010533           12 FSNSEQIDFQKQSSLITLPQPRAHPFVPKDHPFFVRTDLTAH-EMGPP-------KTVRTISQEAFDEVVKENMEDLGME   83 (508)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~isQetfd~~v~eni~~~~m~   83 (508)
                      -|.+-+.--+++..|.+..-++.  +.|.....+..+.++.. ||.+=       ..-++|+-|+-...=..-++-+-++
T Consensus        14 ~spDn~vr~~Ae~~l~~~~~~~~--~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E   91 (1075)
T KOG2171|consen   14 LSPDNEVRRQAEEALETLAKTEP--LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSE   91 (1075)
T ss_pred             cCCCchHHHHHHHHHHHhhcccc--hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhc
Confidence            35555666677777876554443  66666666655555433 33222       1234456555533333455666677


Q ss_pred             hhHHHHHHHHHHhhccccCCCcccc-CCCCCCCCCChHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCC
Q 010533           84 PTEALQDAIQTLSLQGVDLSGIVKC-VPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEG  162 (508)
Q Consensus        84 p~eal~~aI~q~~~qgvdLs~i~~~-~~~~~~~~~~~v~~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~  162 (508)
                      ++.-+|..+.+--+      .|.+. .+.       .=-+.+..|-....+.       +......|+..|..+...   
T Consensus        92 ~~~~vr~k~~dviA------eia~~~l~e-------~WPell~~L~q~~~S~-------~~~~rE~al~il~s~~~~---  148 (1075)
T KOG2171|consen   92 TEPSVRHKLADVIA------EIARNDLPE-------KWPELLQFLFQSTKSP-------NPSLRESALLILSSLPET---  148 (1075)
T ss_pred             cchHHHHHHHHHHH------HHHHhcccc-------chHHHHHHHHHHhcCC-------CcchhHHHHHHHHhhhhh---
Confidence            77777666643210      11111 000       0223455555555443       666666777777766542   


Q ss_pred             hhhHHHHHHCCcHHHHHHHHhccc-CCCHHHHHHHHHHHHHhhcCCc-chhHHHh-cCChHHHHHHHhcC--CCCHHHHH
Q 010533          163 SVNAAVATKNGGVELVCSICYKMR-CGSKRVLDSCLKTMALLVHDVQ-STETFRT-GGGPKLLVNILIDG--NEDPEILN  237 (508)
Q Consensus       163 ~~~r~~i~~~Gavp~Lv~lL~~~~-~~~~~~~~~al~aLa~l~~~~~-~~~~i~~-~ggi~~Lv~lL~~~--~~~~~v~~  237 (508)
                      ..+    ...+-++.+..++..+- .++..+...++.++.......+ ++..+.. ..-+|.++..|...  .++.+...
T Consensus       149 ~~~----~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~  224 (1075)
T KOG2171|consen  149 FGN----TLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAK  224 (1075)
T ss_pred             hcc----ccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHH
Confidence            111    11334566666665331 1233488888888877664442 2222222 23466666666432  34566677


Q ss_pred             HHHHHHHHhhcCChhh-HHHHHHcCcHHHHHHHHhcC--ChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhc--C
Q 010533          238 SGFAVVAASATGNEVV-KESYMELKIDELILEILSRQ--RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKI--G  312 (508)
Q Consensus       238 ~a~~~L~~l~~~~e~n-r~~i~~~G~i~~Lv~lL~~~--~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~--g  312 (508)
                      .++.++-.++...+.. |..+.  .+|...+++-++.  ++.+...|...|..++..         +....|.....  -
T Consensus       225 ~~l~~l~El~e~~pk~l~~~l~--~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~---------Ap~~~k~~~~~~~~  293 (1075)
T KOG2171|consen  225 SALEALIELLESEPKLLRPHLS--QIIQFSLEIAKNKELENSIRHLALEFLVSLSEY---------APAMCKKLALLGHT  293 (1075)
T ss_pred             HHHHHHHHHHhhchHHHHHHHH--HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh---------hHHHhhhchhhhcc
Confidence            8888888876544432 22222  3566666666654  235666677777766632         11122322221  2


Q ss_pred             CHHHHHHHHhcCCCh---------------hHHHHHHHHHHHhhcChhhHhHHhhcCC---HHHHHHHHhccCCCCcHHH
Q 010533          313 IARALVHSLHAGLSS---------------PSLISASIALKAVAVNDEICKSVAENGG---IDALLRCIDDSGLQGNKTV  374 (508)
Q Consensus       313 ~i~~Lv~lL~~~~d~---------------~~~~~a~~aL~~La~~~e~~~~i~e~Gg---i~~Lv~lL~~~~~~~~~~v  374 (508)
                      .++.++..+....+.               .--..+-.+|-.||.         ..||   +++++..+.....+.++.-
T Consensus       294 lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~---------~L~g~~v~p~~~~~l~~~l~S~~w~~  364 (1075)
T KOG2171|consen  294 LVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLAL---------HLGGKQVLPPLFEALEAMLQSTEWKE  364 (1075)
T ss_pred             HHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHh---------cCChhhehHHHHHHHHHHhcCCCHHH
Confidence            356666666543311               011122233333332         2343   5566665554333446788


Q ss_pred             HHHHHHHHHHhh-CCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHH
Q 010533          375 ARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAML  453 (508)
Q Consensus       375 ~~~al~aL~~La-~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~  453 (508)
                      +++++.+|+.++ |+.+.-..... ..++.++..|+  ..+|.|+-.||-+|..++..=....+.-...-..+.|+..|.
T Consensus       365 R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~--DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld  441 (1075)
T KOG2171|consen  365 RHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLN--DPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLD  441 (1075)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcC--CCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhc
Confidence            899999999987 44333222221 24556666666  567999999999999998644333333334446778888885


Q ss_pred             cCCCcHHHHHHHHHHHHHhhhcC
Q 010533          454 KFPNAQQLQRSSCFMIRNLVARN  476 (508)
Q Consensus       454 ~h~~~~~vq~~A~~aL~nL~~~~  476 (508)
                      . +.++.||..|+.|+-|+....
T Consensus       442 ~-~~~~rV~ahAa~al~nf~E~~  463 (1075)
T KOG2171|consen  442 S-TQNVRVQAHAAAALVNFSEEC  463 (1075)
T ss_pred             c-cCchHHHHHHHHHHHHHHHhC
Confidence            4 577899999999999987543

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.67  E-value=0.0025  Score=68.08  Aligned_cols=270  Identities=14%  Similarity=0.098  Sum_probs=166.7

Q ss_pred             HHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHH--h-----cccCCCHHHHHHHHHHHHHhh-cCCcchhHHHhcCChHH
Q 010533          150 FDKLIELCGGNEGSVNAAVATKNGGVELVCSIC--Y-----KMRCGSKRVLDSCLKTMALLV-HDVQSTETFRTGGGPKL  221 (508)
Q Consensus       150 l~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL--~-----~~~~~~~~~~~~al~aLa~l~-~~~~~~~~i~~~ggi~~  221 (508)
                      |..||-+..   ++....-+....++..|+.+=  .     .....+.++...|+..|++++ .....|..+++.|+.+.
T Consensus         2 L~~LRiLsR---d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~   78 (446)
T PF10165_consen    2 LETLRILSR---DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEK   78 (446)
T ss_pred             HHHHHHHcc---CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHH
Confidence            455555554   444444555555566665543  0     122256788889999999876 33355788899999999


Q ss_pred             HHHHHhcCCC---CHHHHHHHHHHHHHhhcCChhhHHHHH-HcCcHHHHHHHHhcCCh-----------------HHHHH
Q 010533          222 LVNILIDGNE---DPEILNSGFAVVAASATGNEVVKESYM-ELKIDELILEILSRQRN-----------------DSIQS  280 (508)
Q Consensus       222 Lv~lL~~~~~---~~~v~~~a~~~L~~l~~~~e~nr~~i~-~~G~i~~Lv~lL~~~~~-----------------~~~~~  280 (508)
                      +++.|+.+.+   +.++.-...+.|--++......+..++ +.+++..|+..|..+-.                 .+..+
T Consensus        79 l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~E  158 (446)
T PF10165_consen   79 LCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSE  158 (446)
T ss_pred             HHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHH
Confidence            9999987632   577777788888777766777777777 55899999888864210                 34556


Q ss_pred             HHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcC---C--C---hhHHHHHHHHHHHhhcCh-hh-----
Q 010533          281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAG---L--S---SPSLISASIALKAVAVND-EI-----  346 (508)
Q Consensus       281 A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~---~--d---~~~~~~a~~aL~~La~~~-e~-----  346 (508)
                      +..+++|++..-.....        .  -....++.|+.+|...   .  +   ......+..+|.++-... +.     
T Consensus       159 iLKllFNit~~~~~~~~--------~--~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~  228 (446)
T PF10165_consen  159 ILKLLFNITLHYPKSVP--------E--EFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPK  228 (446)
T ss_pred             HHHHHHHhhhccCcccc--------h--hhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhccc
Confidence            78888898754332221        0  0123455555555543   2  1   234555666666552211 11     


Q ss_pred             --Hh----HHhhcCCHHHHHHHHhccCCCC----cHHHHHHHHHHHHHhhCC-chhHHHHHh---------------CCc
Q 010533          347 --CK----SVAENGGIDALLRCIDDSGLQG----NKTVARICCSLLSKLAGS-DSNKSAIIE---------------NGG  400 (508)
Q Consensus       347 --~~----~i~e~Ggi~~Lv~lL~~~~~~~----~~~v~~~al~aL~~La~~-~~~k~~Iv~---------------~Gg  400 (508)
                        ..    .......+..|+++|....+..    ..+.+...+.+|.+++.. ...|..+..               .+.
T Consensus       229 ~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~t  308 (446)
T PF10165_consen  229 FQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDT  308 (446)
T ss_pred             CCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcc
Confidence              00    0112223666777776432111    125778889999999864 455555543               223


Q ss_pred             H-HHHHHHHhccCCCHHHHHHHHHHHHHHhcCChh
Q 010533          401 M-DKLIVVSARFSDDASVLQEVMSIITVLSLRSPE  434 (508)
Q Consensus       401 l-~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~  434 (508)
                      + ..|+++|.  +..+.++..+.-.|..||.+|+.
T Consensus       309 L~~rLlrLmt--~~~~~~k~~vaellf~Lc~~d~~  341 (446)
T PF10165_consen  309 LRSRLLRLMT--SPDPQLKDAVAELLFVLCKEDAS  341 (446)
T ss_pred             hHHHHHHHhC--CCCchHHHHHHHHHHHHHhhhHH
Confidence            3 58899997  44489999999999999976543

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=97.65  E-value=0.013  Score=62.42  Aligned_cols=312  Identities=13%  Similarity=0.101  Sum_probs=185.8

Q ss_pred             hHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcH--HHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCCh
Q 010533          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGV--ELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGP  219 (508)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gav--p~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi  219 (508)
                      .....++++..+...|.+ .+|  ...+...+++  .+....++..  .+..+...+|++|..-+..-  +..|-.++-.
T Consensus       147 p~~~k~~sl~~~gy~ces-~~P--e~li~~sN~il~aiv~ga~k~e--t~~avRLaaL~aL~dsl~fv--~~nf~~E~er  219 (858)
T COG5215         147 PVSGKCESLGICGYHCES-EAP--EDLIQMSNVILFAIVMGALKNE--TTSAVRLAALKALMDSLMFV--QGNFCYEEER  219 (858)
T ss_pred             chHhHHHHHHHHHHHhhc-cCH--HHHHHHhhHHHHHHHHhhcccC--chHHHHHHHHHHHHHHHHHH--HHhhcchhhh
Confidence            456678899999999985 244  3455555543  2333455554  47788888888887622100  1122222222


Q ss_pred             ----HHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCC-c-
Q 010533          220 ----KLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPD-D-  293 (508)
Q Consensus       220 ----~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~d-d-  293 (508)
                          +.+++.=  ..++.+++..++.++..+..-+-.--+.+++.-....+...+++.++++.-.|...-+.+|..+ | 
T Consensus       220 Ny~mqvvceat--q~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~  297 (858)
T COG5215         220 NYFMQVVCEAT--QGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDG  297 (858)
T ss_pred             chhheeeehhc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhh
Confidence                2333332  2578999999999998886544444557777767777788888877765555544433444221 0 


Q ss_pred             -------chhhhhhcchHHHHHHhcCCHHHHHHHHhc-CCCh-----hHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHH
Q 010533          294 -------DQVVASQVYGYARRFAKIGIARALVHSLHA-GLSS-----PSLISASIALKAVAVNDEICKSVAENGGIDALL  360 (508)
Q Consensus       294 -------~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~-~~d~-----~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv  360 (508)
                             +.+|. +.|..++.-+. ..+|.|++||.. +.|.     ++-..+..+|--.+.   +|.    .-.+.+++
T Consensus       298 ~~e~~~~pe~p~-qn~~fa~aav~-dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq---~~g----d~i~~pVl  368 (858)
T COG5215         298 EMEDKYLPEVPA-QNHGFARAAVA-DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQ---LKG----DKIMRPVL  368 (858)
T ss_pred             HHHHhhcccCch-hhcchHHHHHH-HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHH---Hhh----hHhHHHHH
Confidence                   12233 45555554432 579999999987 3321     222233333322221   111    12345667


Q ss_pred             HHHhccCCCCcHHHHHHHHHHHHHhhC--CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 010533          361 RCIDDSGLQGNKTVARICCSLLSKLAG--SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAAR  438 (508)
Q Consensus       361 ~lL~~~~~~~~~~v~~~al~aL~~La~--~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~  438 (508)
                      ......-..++..=.+.+.-+++.+-.  +.+....++. .++|.|...|.  .+.-.+++-++|++..|+.    ....
T Consensus       369 ~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~-qalp~i~n~m~--D~~l~vk~ttAwc~g~iad----~va~  441 (858)
T COG5215         369 GFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVP-QALPGIENEMS--DSCLWVKSTTAWCFGAIAD----HVAM  441 (858)
T ss_pred             HHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHH-hhhHHHHHhcc--cceeehhhHHHHHHHHHHH----HHHH
Confidence            777655444556677788888888763  2355566664 67899999887  4456789999999999984    2333


Q ss_pred             HHh-cCcHHHHHHHH-HcCCCcHHHHHHHHHHHHHhhhcCcc
Q 010533          439 AME-AGSGDLAIQAM-LKFPNAQQLQRSSCFMIRNLVARNPE  478 (508)
Q Consensus       439 i~~-~G~i~~Lv~~L-~~h~~~~~vq~~A~~aL~nL~~~~~e  478 (508)
                      ++. .|-++..+.+. ..-.+++.+..++||..-|++-+-++
T Consensus       442 ~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~  483 (858)
T COG5215         442 IISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAK  483 (858)
T ss_pred             hcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhh
Confidence            333 33344444332 22234567778999999999865433

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.61  E-value=0.00015  Score=49.82  Aligned_cols=39  Identities=31%  Similarity=0.540  Sum_probs=36.0

Q ss_pred             chhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010533          389 DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS  429 (508)
Q Consensus       389 ~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La  429 (508)
                      ++++..+++.|+++.|+++|.  ++++.+++.++++|.||+
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~--~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLK--SEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHc
Confidence            458899999999999999998  678999999999999997

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.58  E-value=0.00015  Score=49.82  Aligned_cols=39  Identities=13%  Similarity=0.297  Sum_probs=34.9

Q ss_pred             hhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhh
Q 010533          433 PENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV  473 (508)
Q Consensus       433 ~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~  473 (508)
                      ++++..+++.|+++.|+++|.  +++..+++.++|+|+||+
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~--~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLK--SEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHc
Confidence            458889999999999999996  457899999999999986

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF05536 Neurochondrin: Neurochondrin

Probab=97.53  E-value=0.0076  Score=65.95  Aligned_cols=196  Identities=16%  Similarity=0.118  Sum_probs=130.2

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCC-----ChhHH-HHHHHH
Q 010533          263 DELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-----SSPSL-ISASIA  336 (508)
Q Consensus       263 i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~-----d~~~~-~~a~~a  336 (508)
                      +...+.+|+..+++-.-.+...+..++.++|...      ...+.+.++=|.+-|-.+|+++.     ++... .-+...
T Consensus         7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~------~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lavsv   80 (543)
T PF05536_consen    7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDS------QTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSV   80 (543)
T ss_pred             HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhH------HHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence            4556678887665444445556667776554321      22345667767888889999854     22333 334445


Q ss_pred             HHHhhcChhhH--hHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCC
Q 010533          337 LKAVAVNDEIC--KSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDD  414 (508)
Q Consensus       337 L~~La~~~e~~--~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~  414 (508)
                      |..++..++..  ..+++  -||.|++++....+   ..+...|+.+|..++.+++++.++++.|+++.|.+.+..   .
T Consensus        81 L~~f~~~~~~a~~~~~~~--~IP~Lle~l~~~s~---~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~---~  152 (543)
T PF05536_consen   81 LAAFCRDPELASSPQMVS--RIPLLLEILSSSSD---LETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN---Q  152 (543)
T ss_pred             HHHHcCChhhhcCHHHHH--HHHHHHHHHHcCCc---hhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh---C
Confidence            67778777664  34553  58999999987644   379999999999999999999999999999999999983   5


Q ss_pred             HHHHHHHHHHHHHHhcCChhhH-----HHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcC
Q 010533          415 ASVLQEVMSIITVLSLRSPENA-----ARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARN  476 (508)
Q Consensus       415 ~~v~e~a~~aL~~La~~~~~~~-----~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~  476 (508)
                      +...+.++.+|.+++.+.....     ..+.  ..++.+-+......+  ..+-+.|..|.++-.+.
T Consensus       153 ~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~--~il~~La~~fs~~~~--~~kfell~~L~~~L~~~  215 (543)
T PF05536_consen  153 SFQMEIALNLLLNLLSRLGQKSWAEDSQLLH--SILPSLARDFSSFHG--EDKFELLEFLSAFLPRS  215 (543)
T ss_pred             cchHHHHHHHHHHHHHhcchhhhhhhHHHHH--HHHHHHHHHHHhhcc--chHHHHHHHHHHhcCcC
Confidence            6788999999999886543111     1111  123334333432222  23446788777776654

>PTZ00429 beta-adaptin; Provisional

Probab=97.49  E-value=0.27  Score=55.75  Aligned_cols=295  Identities=12%  Similarity=0.016  Sum_probs=160.7

Q ss_pred             HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHh
Q 010533          124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL  203 (508)
Q Consensus       124 l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l  203 (508)
                      +..|+..|.+.       +....+++++.+-.....  +.+.      ....|-++.++.+.   +.++..-+.-.+...
T Consensus        34 ~~ELr~~L~s~-------~~~~kk~alKkvIa~mt~--G~Dv------S~LF~dVvk~~~S~---d~elKKLvYLYL~~y   95 (746)
T PTZ00429         34 GAELQNDLNGT-------DSYRKKAAVKRIIANMTM--GRDV------SYLFVDVVKLAPST---DLELKKLVYLYVLST   95 (746)
T ss_pred             HHHHHHHHHCC-------CHHHHHHHHHHHHHHHHC--CCCc------hHHHHHHHHHhCCC---CHHHHHHHHHHHHHH
Confidence            44466666665       666778888776655433  2211      12466667777663   444433333333333


Q ss_pred             hcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHH
Q 010533          204 VHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYD  283 (508)
Q Consensus       204 ~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~  283 (508)
                      ...+   ++.. --.+..+.+-|.  +.++.++..|+++++.+.  .++.-+.     .++.+.+.|...+.-|.+.|+-
T Consensus        96 a~~~---pela-lLaINtl~KDl~--d~Np~IRaLALRtLs~Ir--~~~i~e~-----l~~~lkk~L~D~~pYVRKtAal  162 (746)
T PTZ00429         96 ARLQ---PEKA-LLAVNTFLQDTT--NSSPVVRALAVRTMMCIR--VSSVLEY-----TLEPLRRAVADPDPYVRKTAAM  162 (746)
T ss_pred             cccC---hHHH-HHHHHHHHHHcC--CCCHHHHHHHHHHHHcCC--cHHHHHH-----HHHHHHHHhcCCCHHHHHHHHH
Confidence            3222   1110 012333333333  458899999999998763  2322222     3456677776666678888887


Q ss_pred             HHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHH
Q 010533          284 AIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCI  363 (508)
Q Consensus       284 aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL  363 (508)
                      ++..|-..+..            .+.+.|.++.|.++|.+ .|+.++.++..+|..+...+...-.+ ..+-+..|+..+
T Consensus       163 ai~Kly~~~pe------------lv~~~~~~~~L~~LL~D-~dp~Vv~nAl~aL~eI~~~~~~~l~l-~~~~~~~Ll~~L  228 (746)
T PTZ00429        163 GLGKLFHDDMQ------------LFYQQDFKKDLVELLND-NNPVVASNAAAIVCEVNDYGSEKIES-SNEWVNRLVYHL  228 (746)
T ss_pred             HHHHHHhhCcc------------cccccchHHHHHHHhcC-CCccHHHHHHHHHHHHHHhCchhhHH-HHHHHHHHHHHh
Confidence            88777533211            12245778889998875 47889999999998886532111111 122345566666


Q ss_pred             hccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhc
Q 010533          364 DDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLR-SPENAARAMEA  442 (508)
Q Consensus       364 ~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~-~~~~~~~i~~~  442 (508)
                      .+.+    ...+-..+.+|....  +......  ...+..+...|+  +.++.|.-.|+.++.++... +++....+.. 
T Consensus       229 ~e~~----EW~Qi~IL~lL~~y~--P~~~~e~--~~il~~l~~~Lq--~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~-  297 (746)
T PTZ00429        229 PECN----EWGQLYILELLAAQR--PSDKESA--ETLLTRVLPRMS--HQNPAVVMGAIKVVANLASRCSQELIERCTV-  297 (746)
T ss_pred             hcCC----hHHHHHHHHHHHhcC--CCCcHHH--HHHHHHHHHHhc--CCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH-
Confidence            5532    266667777775532  2221111  134556666666  46789999999999988743 2333332221 


Q ss_pred             CcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCc
Q 010533          443 GSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNP  477 (508)
Q Consensus       443 G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~  477 (508)
                      ....+++.++.   +++.+|--+...|.-++.+.|
T Consensus       298 rl~~pLv~L~s---s~~eiqyvaLr~I~~i~~~~P  329 (746)
T PTZ00429        298 RVNTALLTLSR---RDAETQYIVCKNIHALLVIFP  329 (746)
T ss_pred             HHHHHHHHhhC---CCccHHHHHHHHHHHHHHHCH
Confidence            12244444431   234555555555555554444

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.44  E-value=0.025  Score=62.09  Aligned_cols=278  Identities=9%  Similarity=0.014  Sum_probs=159.4

Q ss_pred             CCcHHHHHHHHhcccCC----CH---HHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCC--CCHHHHHHHHHH
Q 010533          172 NGGVELVCSICYKMRCG----SK---RVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGN--EDPEILNSGFAV  242 (508)
Q Consensus       172 ~Gavp~Lv~lL~~~~~~----~~---~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~--~~~~v~~~a~~~  242 (508)
                      .+.+|.|+++|.+.+.+    +.   .-.-.||..++.++.|.          .++.++.+.+.+-  ++-.-.+.+.-+
T Consensus       318 ~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~----------Iv~~Vl~Fiee~i~~pdwr~reaavmA  387 (859)
T KOG1241|consen  318 QDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD----------IVPHVLPFIEENIQNPDWRNREAAVMA  387 (859)
T ss_pred             hHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc----------chhhhHHHHHHhcCCcchhhhhHHHHH
Confidence            57899999999763321    11   12334666666655543          5667777776443  334455666666


Q ss_pred             HHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHh
Q 010533          243 VAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLH  322 (508)
Q Consensus       243 L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~  322 (508)
                      ++.+..+.+..+-.-+..+++|.++.++..+.--+...+.|+|..++..-    +....  +  .....+.++.++.-|.
T Consensus       388 FGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l----~e~~~--n--~~~l~~~l~~l~~gL~  459 (859)
T KOG1241|consen  388 FGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFL----PEAII--N--QELLQSKLSALLEGLN  459 (859)
T ss_pred             HHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhc----hhhcc--c--HhhhhHHHHHHHHHhh
Confidence            66665666666655556789999999998544456677999999887321    00000  0  0111244566666665


Q ss_pred             cCCChhHHHHHHHHHHHhhcC-h----hh-HhHHhhcCCHHHHHHHHhccCCC---CcHHHHHHHHHHHHHhhCC--chh
Q 010533          323 AGLSSPSLISASIALKAVAVN-D----EI-CKSVAENGGIDALLRCIDDSGLQ---GNKTVARICCSLLSKLAGS--DSN  391 (508)
Q Consensus       323 ~~~d~~~~~~a~~aL~~La~~-~----e~-~~~i~e~Ggi~~Lv~lL~~~~~~---~~~~v~~~al~aL~~La~~--~~~  391 (508)
                      +  .+.+-.++||++-+|+.. .    ++ ...... ---+.+++-|-...+.   ....++..+..+|..|..+  ++.
T Consensus       460 D--ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~v  536 (859)
T KOG1241|consen  460 D--EPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDV  536 (859)
T ss_pred             h--CchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHH
Confidence            4  367889999999999831 1    11 000111 1122233322211221   1247888999999998642  344


Q ss_pred             HHHHHhCCcHHHHHH----HHhc----cCC---CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHH
Q 010533          392 KSAIIENGGMDKLIV----VSAR----FSD---DASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQ  460 (508)
Q Consensus       392 k~~Iv~~Ggl~~Lv~----lL~~----~~~---~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~  460 (508)
                      -..+.  +....++.    .|..    +.+   -..+|..-|.+|..+-.+-+.-..++.+. ....++++|.+ +++..
T Consensus       537 y~~v~--~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~-iM~lflri~~s-~~s~~  612 (859)
T KOG1241|consen  537 YPMVQ--KLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQ-IMGLFLRIFES-KRSAV  612 (859)
T ss_pred             HHHHH--HHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHH-HHHHHHHHHcC-Ccccc
Confidence            44333  33333332    2221    111   12467778888888765444434444332 56778888876 56677


Q ss_pred             HHHHHHHHHHHhhh
Q 010533          461 LQRSSCFMIRNLVA  474 (508)
Q Consensus       461 vq~~A~~aL~nL~~  474 (508)
                      +++.|-.|+.-++.
T Consensus       613 v~e~a~laV~tl~~  626 (859)
T KOG1241|consen  613 VHEEAFLAVSTLAE  626 (859)
T ss_pred             chHHHHHHHHHHHH
Confidence            88888888887764

>PTZ00429 beta-adaptin; Provisional

Probab=97.41  E-value=0.21  Score=56.70  Aligned_cols=285  Identities=15%  Similarity=0.049  Sum_probs=147.5

Q ss_pred             hHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHH
Q 010533          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKL  221 (508)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~  221 (508)
                      +.---+.|+-.+.++-..  +++   .+.+.|.++.|..+|..   .+..++.+|+.+|..+....... --...+.+..
T Consensus       153 ~pYVRKtAalai~Kly~~--~pe---lv~~~~~~~~L~~LL~D---~dp~Vv~nAl~aL~eI~~~~~~~-l~l~~~~~~~  223 (746)
T PTZ00429        153 DPYVRKTAAMGLGKLFHD--DMQ---LFYQQDFKKDLVELLND---NNPVVASNAAAIVCEVNDYGSEK-IESSNEWVNR  223 (746)
T ss_pred             CHHHHHHHHHHHHHHHhh--Ccc---cccccchHHHHHHHhcC---CCccHHHHHHHHHHHHHHhCchh-hHHHHHHHHH
Confidence            444445555566665543  343   44567888999998875   57899999999998886533211 1122333455


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhc
Q 010533          222 LVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQV  301 (508)
Q Consensus       222 Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a  301 (508)
                      ++..|..  .++..|...+.+|..-.   +......  ...+..+...|++.+..|+-+|+.++.++....+.       
T Consensus       224 Ll~~L~e--~~EW~Qi~IL~lL~~y~---P~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~-------  289 (746)
T PTZ00429        224 LVYHLPE--CNEWGQLYILELLAAQR---PSDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQ-------  289 (746)
T ss_pred             HHHHhhc--CChHHHHHHHHHHHhcC---CCCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCH-------
Confidence            5555543  35777777777775422   2111111  24566677777776668888899999888743211       


Q ss_pred             chHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHH
Q 010533          302 YGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSL  381 (508)
Q Consensus       302 ~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~a  381 (508)
                       +..+.... ....+|+.|+.  ++++++.-+...|..+....   ..+...- ++...   -..+|  ...|....+.+
T Consensus       290 -~~~~~~~~-rl~~pLv~L~s--s~~eiqyvaLr~I~~i~~~~---P~lf~~~-~~~Ff---~~~~D--p~yIK~~KLeI  356 (746)
T PTZ00429        290 -ELIERCTV-RVNTALLTLSR--RDAETQYIVCKNIHALLVIF---PNLLRTN-LDSFY---VRYSD--PPFVKLEKLRL  356 (746)
T ss_pred             -HHHHHHHH-HHHHHHHHhhC--CCccHHHHHHHHHHHHHHHC---HHHHHHH-HHhhh---cccCC--cHHHHHHHHHH
Confidence             11111111 12366677643  24555555554454444321   1111110 11111   11111  12566666777


Q ss_pred             HHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHH
Q 010533          382 LSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQL  461 (508)
Q Consensus       382 L~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~v  461 (508)
                      |..|+. ++|...|+     .-|.+...  ..+..+++.++.++..+|.+-|.....     .+..|++++... .  .+
T Consensus       357 L~~Lan-e~Nv~~IL-----~EL~eYa~--d~D~ef~r~aIrAIg~lA~k~~~~a~~-----cV~~Ll~ll~~~-~--~~  420 (746)
T PTZ00429        357 LLKLVT-PSVAPEIL-----KELAEYAS--GVDMVFVVEVVRAIASLAIKVDSVAPD-----CANLLLQIVDRR-P--EL  420 (746)
T ss_pred             HHHHcC-cccHHHHH-----HHHHHHhh--cCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHhcCC-c--hh
Confidence            766663 33333333     23334443  335566667777777776655543332     234455555321 1  12


Q ss_pred             HHHHHHHHHHhhhcCcc
Q 010533          462 QRSSCFMIRNLVARNPE  478 (508)
Q Consensus       462 q~~A~~aL~nL~~~~~e  478 (508)
                      ..++..+++++..+.|+
T Consensus       421 v~e~i~vik~IlrkyP~  437 (746)
T PTZ00429        421 LPQVVTAAKDIVRKYPE  437 (746)
T ss_pred             HHHHHHHHHHHHHHCcc
Confidence            23455566666554444

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.38  E-value=0.17  Score=58.19  Aligned_cols=284  Identities=12%  Similarity=0.111  Sum_probs=147.0

Q ss_pred             CcHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhhcCCcchhHHHh---cCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q 010533          173 GGVELVCSICYKM-RCGSKRVLDSCLKTMALLVHDVQSTETFRT---GGGPKLLVNILIDGNEDPEILNSGFAVVAASAT  248 (508)
Q Consensus       173 Gavp~Lv~lL~~~-~~~~~~~~~~al~aLa~l~~~~~~~~~i~~---~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~  248 (508)
                      ..+|.++..|... +.+|.+....++..|..++.-.   +.+..   ...++..+++-.+..=+..++..|+.+|..++.
T Consensus       202 ~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~---pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e  278 (1075)
T KOG2171|consen  202 DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESE---PKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSE  278 (1075)
T ss_pred             HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhc---hHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence            4688888877543 2245666777888887776532   33333   223444555544433466777788877776643


Q ss_pred             CChhhHHHHHHc--CcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHH-hcC---CHHHHHHHHh
Q 010533          249 GNEVVKESYMEL--KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-KIG---IARALVHSLH  322 (508)
Q Consensus       249 ~~e~nr~~i~~~--G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~-~~g---~i~~Lv~lL~  322 (508)
                      .-+...+..-..  -.++.++.++....++    .-|.=.--.-+|+...+...+..-.-.++ ..|   .+|+++..+.
T Consensus       279 ~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D----~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~  354 (1075)
T KOG2171|consen  279 YAPAMCKKLALLGHTLVPVLLAMMTEEEDD----DEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALE  354 (1075)
T ss_pred             hhHHHhhhchhhhccHHHHHHHhcCCcccc----hhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHH
Confidence            322211111111  2344444444332111    00000000001110111110111111122 223   3566665554


Q ss_pred             cC---CChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC--chhHHHHHh
Q 010533          323 AG---LSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGS--DSNKSAIIE  397 (508)
Q Consensus       323 ~~---~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~--~~~k~~Iv~  397 (508)
                      ..   ++..-...+..+|+.++.   -|..... |-++.++.+.-..-.++++.|+-+||.+|+.++.+  ++....- .
T Consensus       355 ~~l~S~~w~~R~AaL~Als~i~E---Gc~~~m~-~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~-~  429 (1075)
T KOG2171|consen  355 AMLQSTEWKERHAALLALSVIAE---GCSDVMI-GNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKH-H  429 (1075)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHc---ccHHHHH-HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHH-H
Confidence            32   233344566666666664   2333222 23444443333222234569999999999999863  3433322 2


Q ss_pred             CCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHH----HHHcCCCcHHHHHHHHHHHHHhh
Q 010533          398 NGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQ----AMLKFPNAQQLQRSSCFMIRNLV  473 (508)
Q Consensus       398 ~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~----~L~~h~~~~~vq~~A~~aL~nL~  473 (508)
                      .-.+|.|+..|.. ..++.|+.+|+++|-|+....+   ..++ .+..+.|++    .|. .++.+.||+++..+|...+
T Consensus       430 e~l~~aL~~~ld~-~~~~rV~ahAa~al~nf~E~~~---~~~l-~pYLd~lm~~~l~~L~-~~~~~~v~e~vvtaIasvA  503 (1075)
T KOG2171|consen  430 ERLPPALIALLDS-TQNVRVQAHAAAALVNFSEECD---KSIL-EPYLDGLMEKKLLLLL-QSSKPYVQEQAVTAIASVA  503 (1075)
T ss_pred             HhccHHHHHHhcc-cCchHHHHHHHHHHHHHHHhCc---HHHH-HHHHHHHHHHHHHHHh-cCCchhHHHHHHHHHHHHH
Confidence            3456788888863 4678999999999999986443   2233 233444443    443 3466889999999998876


Q ss_pred             h
Q 010533          474 A  474 (508)
Q Consensus       474 ~  474 (508)
                      .
T Consensus       504 ~  504 (1075)
T KOG2171|consen  504 D  504 (1075)
T ss_pred             H
Confidence            3

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=0.11  Score=59.06  Aligned_cols=265  Identities=14%  Similarity=0.107  Sum_probs=154.9

Q ss_pred             HHHHHHHHHHHHhhcCCcchhHHH-----hcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHH
Q 010533          191 RVLDSCLKTMALLVHDVQSTETFR-----TGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDEL  265 (508)
Q Consensus       191 ~~~~~al~aLa~l~~~~~~~~~i~-----~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~  265 (508)
                      +-+.-++.+|.++...+++-..+.     --|--+.+..+|+.+ .+++++..++.++..+. .+.++-..+++.|.+..
T Consensus      1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~-~~~~iq~LaL~Vi~~~T-an~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCR-KHPKLQILALQVILLAT-ANKECVTDLATCNVLTT 1817 (2235)
T ss_pred             HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHc-CCchHHHHHHHHHHHHh-cccHHHHHHHhhhHHHH
Confidence            445567888888887664322222     235567777788764 57889999999998774 45667778889999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHH------
Q 010533          266 ILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKA------  339 (508)
Q Consensus       266 Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~------  339 (508)
                      |+.+|.+.. +..+-+..+|..|+...+.          ++.-++.|++.-+.+.+-..........++..|+.      
T Consensus      1818 LL~lLHS~P-S~R~~vL~vLYAL~S~~~i----------~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl 1886 (2235)
T KOG1789|consen 1818 LLTLLHSQP-SMRARVLDVLYALSSNGQI----------GKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKL 1886 (2235)
T ss_pred             HHHHHhcCh-HHHHHHHHHHHHHhcCcHH----------HHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccc
Confidence            999998743 3444466677777654322          22222344443333332221111111111111111      


Q ss_pred             ---------------------------------------------------------hhcC--------hhhHh------
Q 010533          340 ---------------------------------------------------------VAVN--------DEICK------  348 (508)
Q Consensus       340 ---------------------------------------------------------La~~--------~e~~~------  348 (508)
                                                                               ++..        ++...      
T Consensus      1887 ~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqs 1966 (2235)
T KOG1789|consen 1887 TGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQS 1966 (2235)
T ss_pred             cCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhh
Confidence                                                                     1110        00000      


Q ss_pred             ----HH---hhcCCH------------------------HHHHHHHhccCCCC-cHHHHHHHHHHHHHhhCCchhHHHHH
Q 010533          349 ----SV---AENGGI------------------------DALLRCIDDSGLQG-NKTVARICCSLLSKLAGSDSNKSAII  396 (508)
Q Consensus       349 ----~i---~e~Ggi------------------------~~Lv~lL~~~~~~~-~~~v~~~al~aL~~La~~~~~k~~Iv  396 (508)
                          ..   ..-||+                        +.++++|.....++ ..++...|+..|  +..++...+.|.
T Consensus      1967 Ag~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L--~r~hP~LADqip 2044 (2235)
T KOG1789|consen 1967 AGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVEL--VRHHPNLADQLP 2044 (2235)
T ss_pred             cchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHH--HHhCcchhhhCC
Confidence                00   001221                        22334443322111 123333333322  235777788888


Q ss_pred             hCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcC
Q 010533          397 ENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARN  476 (508)
Q Consensus       397 ~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~  476 (508)
                      -.|-+|.++.+|.  ..+..+-..|..+|..|+. |.-++.++.....+..++..|++.++   .---||.+|..+..|+
T Consensus      2045 ~LGylPK~~~Am~--~~n~s~P~SaiRVlH~Lse-n~~C~~AMA~l~~i~~~m~~mkK~~~---~~GLA~EalkR~~~r~ 2118 (2235)
T KOG1789|consen 2045 SLGYLPKFCTAMC--LQNTSAPRSAIRVLHELSE-NQFCCDAMAQLPCIDGIMKSMKKQPS---LMGLAAEALKRLMKRN 2118 (2235)
T ss_pred             CccchHHHHHHHH--hcCCcCcHHHHHHHHHHhh-ccHHHHHHhccccchhhHHHHHhcch---HHHHHHHHHHHHHHHh
Confidence            8899999999997  2334455889999999995 77888888887777789999987543   3347999999888753

>TIGR02270 conserved hypothetical protein

Probab=97.23  E-value=0.065  Score=56.61  Aligned_cols=56  Identities=11%  Similarity=0.082  Sum_probs=39.4

Q ss_pred             cHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhh
Q 010533          400 GMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA  474 (508)
Q Consensus       400 gl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~  474 (508)
                      .++.|+.+++    ++.+++.++.+|..+-  +|         ..++.|++.|.    +..+.+.|-.++..++-
T Consensus       241 a~~~L~~ll~----d~~vr~~a~~AlG~lg--~p---------~av~~L~~~l~----d~~~aR~A~eA~~~ItG  296 (410)
T TIGR02270       241 AQAWLRELLQ----AAATRREALRAVGLVG--DV---------EAAPWCLEAMR----EPPWARLAGEAFSLITG  296 (410)
T ss_pred             HHHHHHHHhc----ChhhHHHHHHHHHHcC--Cc---------chHHHHHHHhc----CcHHHHHHHHHHHHhhC
Confidence            4556666665    2447888888887663  33         36788888884    34588899999999874

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.00  E-value=0.018  Score=52.29  Aligned_cols=133  Identities=14%  Similarity=0.196  Sum_probs=101.8

Q ss_pred             hHhHHhhcCCHHHHHHHHhccCCC--CcHHHHHHHHHHHHHhhCCch-hHHHHHhCCcHHHHHHHHhccCCCHHHHHHHH
Q 010533          346 ICKSVAENGGIDALLRCIDDSGLQ--GNKTVARICCSLLSKLAGSDS-NKSAIIENGGMDKLIVVSARFSDDASVLQEVM  422 (508)
Q Consensus       346 ~~~~i~e~Ggi~~Lv~lL~~~~~~--~~~~v~~~al~aL~~La~~~~-~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~  422 (508)
                      +...+...||+..|+++++++.+.  ...++...++.++..|..++- .++ ......+..++..++....++.+++.+.
T Consensus         3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd-~l~~~FI~Kia~~Vn~~~~d~~i~q~sL   81 (160)
T PF11841_consen    3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD-TLSDSFIKKIASYVNSSAMDASILQRSL   81 (160)
T ss_pred             hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh-hccHHHHHHHHHHHccccccchHHHHHH
Confidence            345678899999999999986541  013788889999999987654 343 5566678889999986555789999999


Q ss_pred             HHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchH
Q 010533          423 SIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSF  481 (508)
Q Consensus       423 ~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~  481 (508)
                      +.|-++...++.....+-+.=-++.|+..|+.  .++.+|.+|-..|-.|-.+.++..+
T Consensus        82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~--~~~~iq~naiaLinAL~~kA~~~~r  138 (160)
T PF11841_consen   82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQV--SNQEIQTNAIALINALFLKADDSKR  138 (160)
T ss_pred             HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHc--CCHHHHHHHHHHHHHHHhcCChHHH
Confidence            99999999888777777666668999999976  5688998888777777666555443

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.00  E-value=0.024  Score=51.45  Aligned_cols=129  Identities=12%  Similarity=0.199  Sum_probs=96.3

Q ss_pred             HHHHHhcCCHHHHHHHHhcCCC-----hhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHH
Q 010533          305 ARRFAKIGIARALVHSLHAGLS-----SPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICC  379 (508)
Q Consensus       305 ~~~i~~~g~i~~Lv~lL~~~~d-----~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al  379 (508)
                      +..+...||+..|++.+++++.     .+.+..+..++..|....-......+.--|..++..+.....  ++.+...++
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~--d~~i~q~sL   81 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAM--DASILQRSL   81 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccc--cchHHHHHH
Confidence            4467778999999999999874     356666666776666544334445554456677777775432  458999999


Q ss_pred             HHHHHhhCCchhHHHHHhCCc-HHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHH
Q 010533          380 SLLSKLAGSDSNKSAIIENGG-MDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAA  437 (508)
Q Consensus       380 ~aL~~La~~~~~k~~Iv~~Gg-l~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~  437 (508)
                      ..|.++..++...-..|+... ++.|+..|+  ..++.+|.++.+.+-+|-.+-++..+
T Consensus        82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq--~~~~~iq~naiaLinAL~~kA~~~~r  138 (160)
T PF11841_consen   82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQ--VSNQEIQTNAIALINALFLKADDSKR  138 (160)
T ss_pred             HHHHHHHhCCHHHHHHHhccCCHHHHHHHHH--cCCHHHHHHHHHHHHHHHhcCChHHH
Confidence            999999987777666666664 899999999  67899999999999999876665443

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.95  E-value=0.15  Score=57.83  Aligned_cols=255  Identities=14%  Similarity=0.184  Sum_probs=145.7

Q ss_pred             HHhcCChHHHHHHHhcC---CCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhc---C-C----hHHHHHH
Q 010533          213 FRTGGGPKLLVNILIDG---NEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSR---Q-R----NDSIQSL  281 (508)
Q Consensus       213 i~~~ggi~~Lv~lL~~~---~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~---~-~----~~~~~~A  281 (508)
                      +.+.||+..++.+|..-   +...++....++.|..+| +...||+.+++.|+++.|++.|+.   . .    .++.+..
T Consensus       113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~-Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L  191 (802)
T PF13764_consen  113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCC-KVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL  191 (802)
T ss_pred             hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHH-hhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence            34578999999988652   335677778888888875 568999999999999999999963   1 2    1233333


Q ss_pred             HHHHHHhc---CCCcchhhhhhcchHHHHHH----hcCCHHHHHHHHhcCC---ChhHHHHHHHHHHHhhcC-hhhHhHH
Q 010533          282 YDAIRVLL---TPDDDQVVASQVYGYARRFA----KIGIARALVHSLHAGL---SSPSLISASIALKAVAVN-DEICKSV  350 (508)
Q Consensus       282 ~~aL~~L~---~~dd~r~~~~~a~~~~~~i~----~~g~i~~Lv~lL~~~~---d~~~~~~a~~aL~~La~~-~e~~~~i  350 (508)
                      ...+-.|.   ..++.+...+.    .....    ...-+..+++.+.+..   ++.+...++..|-+|+.. ++..+.+
T Consensus       192 L~IiE~ll~ea~~~~~~~~~~~----~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~L  267 (802)
T PF13764_consen  192 LEIIESLLSEANSSSSSESKSS----SSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDAL  267 (802)
T ss_pred             HHHHHHHHHHHhhhhhhhcccc----ccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHH
Confidence            33333332   21111110000    00000    0012666777776532   467888899999999984 4444555


Q ss_pred             hhcCCHHHHHHHHhccCCC--C-cHHHHHHHHHHHHHhhCC---chhHHHHHhCCcHHHHHHHHhccCC------CHH--
Q 010533          351 AENGGIDALLRCIDDSGLQ--G-NKTVARICCSLLSKLAGS---DSNKSAIIENGGMDKLIVVSARFSD------DAS--  416 (508)
Q Consensus       351 ~e~Ggi~~Lv~lL~~~~~~--~-~~~v~~~al~aL~~La~~---~~~k~~Iv~~Ggl~~Lv~lL~~~~~------~~~--  416 (508)
                      ++.  .++.+++ ....+.  . +.-.++..|.+..++-.+   ...|+.|++.|.+...++.|..|..      ++.  
T Consensus       268 v~~--F~p~l~f-~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk  344 (802)
T PF13764_consen  268 VEH--FKPYLDF-DKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWK  344 (802)
T ss_pred             HHH--HHHhcCh-hhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHH
Confidence            442  2232221 111100  1 112233333333444322   2568999999999999998875543      122  


Q ss_pred             ------HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCcc
Q 010533          417 ------VLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPE  478 (508)
Q Consensus       417 ------v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e  478 (508)
                            -...++..|.-||.+++..+ .+++.+++ .++..|..-++...+-.-|=-.|-.+.. +++
T Consensus       345 ~~l~~psLp~iL~lL~GLa~gh~~tQ-~~~~~~~l-~~lH~LEqvss~~~IGslAEnlLeal~~-~~~  409 (802)
T PF13764_consen  345 EFLSRPSLPYILRLLRGLARGHEPTQ-LLIAEQLL-PLLHRLEQVSSEEHIGSLAENLLEALAE-NED  409 (802)
T ss_pred             HHhcCCcHHHHHHHHHHHHhcCHHHH-HHHHhhHH-HHHHHhhcCCCccchHHHHHHHHHHHhc-Chh
Confidence                  34568899999998776544 44666677 4455565555444554444445544443 454

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.86  E-value=0.027  Score=60.96  Aligned_cols=263  Identities=11%  Similarity=0.128  Sum_probs=153.9

Q ss_pred             cHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcC--------ChHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010533          174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGG--------GPKLLVNILIDGNEDPEILNSGFAVVAA  245 (508)
Q Consensus       174 avp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~g--------gi~~Lv~lL~~~~~~~~v~~~a~~~L~~  245 (508)
                      ++|.|+.+|.+.   |.-...-|..+|.-++.|.   ..+.+..        -+|.++++.++  .+++++..|+.++-.
T Consensus       129 lLp~L~~~L~s~---d~n~~EgA~~AL~KIcEDs---a~~lds~~~~rpl~~mipkfl~f~~h--~spkiRs~A~~cvNq  200 (885)
T KOG2023|consen  129 LLPQLCELLDSP---DYNTCEGAFGALQKICEDS---AQFLDSDVLTRPLNIMIPKFLQFFKH--PSPKIRSHAVGCVNQ  200 (885)
T ss_pred             HHHHHHHHhcCC---cccccchhHHHHHHHHhhh---HHHHhhhcccCchHHhHHHHHHHHhC--CChhHHHHHHhhhhh
Confidence            478889999875   3334445677777777654   4444442        36778888874  478999999988865


Q ss_pred             hhcCChhhHHHHH-Hc-CcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHH-h-cCCHHHHHHHH
Q 010533          246 SATGNEVVKESYM-EL-KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-K-IGIARALVHSL  321 (508)
Q Consensus       246 l~~~~e~nr~~i~-~~-G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~-~-~g~i~~Lv~lL  321 (508)
                      .-..   ..+.++ .. .-++.|..+-...+++++++.|.+|..|..   .|.         ..++ . .+.++-.+..-
T Consensus       201 ~i~~---~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Lle---vr~---------dkl~phl~~IveyML~~t  265 (885)
T KOG2023|consen  201 FIII---QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLE---VRP---------DKLVPHLDNIVEYMLQRT  265 (885)
T ss_pred             eeec---CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH---hcH---------HhcccchHHHHHHHHHHc
Confidence            4322   223333 21 234444444333345899999999998872   121         1232 1 14456666655


Q ss_pred             hcCCChhHHHHHHHHHHHhhcChhhHhHHhh---cCCHHHHHHHHhccCCCC----------------------------
Q 010533          322 HAGLSSPSLISASIALKAVAVNDEICKSVAE---NGGIDALLRCIDDSGLQG----------------------------  370 (508)
Q Consensus       322 ~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e---~Ggi~~Lv~lL~~~~~~~----------------------------  370 (508)
                      ++. |.++--++|.-...+|..+ .|..+..   ..-||.|++-|.-+.++.                            
T Consensus       266 qd~-dE~VALEACEFwla~aeqp-i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~  343 (885)
T KOG2023|consen  266 QDV-DENVALEACEFWLALAEQP-ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKE  343 (885)
T ss_pred             cCc-chhHHHHHHHHHHHHhcCc-CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchh
Confidence            543 5678888998888888876 4444332   124566664443211000                            


Q ss_pred             ------------------------cHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCC--HHHHHHHHHH
Q 010533          371 ------------------------NKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDD--ASVLQEVMSI  424 (508)
Q Consensus       371 ------------------------~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~--~~v~e~a~~a  424 (508)
                                              +..+++....+|--||.       |-....++.++-+|+.+-.+  =.++|.++-+
T Consensus       344 ~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan-------vf~~elL~~l~PlLk~~L~~~~W~vrEagvLA  416 (885)
T KOG2023|consen  344 HGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN-------VFGDELLPILLPLLKEHLSSEEWKVREAGVLA  416 (885)
T ss_pred             ccCccccccccccccccccccccccccHhhccHHHHHHHHH-------hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHH
Confidence                                    02233333333333332       33334566777777655433  3589999999


Q ss_pred             HHHHhcCChhhHHHHHhc--CcHHHHHHHHHcCCCcHHHHHHHHHHHHHhh
Q 010533          425 ITVLSLRSPENAARAMEA--GSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV  473 (508)
Q Consensus       425 L~~La~~~~~~~~~i~~~--G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~  473 (508)
                      |.+++.+-   .+-++..  ..+|.++++|..  ..+-|++-.||-|...+
T Consensus       417 lGAIAEGc---M~g~~p~LpeLip~l~~~L~D--KkplVRsITCWTLsRys  462 (885)
T KOG2023|consen  417 LGAIAEGC---MQGFVPHLPELIPFLLSLLDD--KKPLVRSITCWTLSRYS  462 (885)
T ss_pred             HHHHHHHH---hhhcccchHHHHHHHHHHhcc--CccceeeeeeeeHhhhh
Confidence            99998642   2222221  147888888854  45678888999988764

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=96.82  E-value=0.21  Score=50.13  Aligned_cols=243  Identities=9%  Similarity=0.096  Sum_probs=147.4

Q ss_pred             hhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHH--HHHHHhcCCCCHHHHHHHH
Q 010533          163 SVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKL--LVNILIDGNEDPEILNSGF  240 (508)
Q Consensus       163 ~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~--Lv~lL~~~~~~~~v~~~a~  240 (508)
                      ......++.+|.+|.++.....   .|.++...|...+..+.--+..-..+....-...  ++.+-.  ..+.-+....+
T Consensus       118 VseillvvNaeilklildcIgg---eddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaa--kcndiaRvRVl  192 (524)
T KOG4413|consen  118 VSEILLVVNAEILKLILDCIGG---EDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAA--KCNDIARVRVL  192 (524)
T ss_pred             HHHHHHHhhhhHHHHHHHHHcC---CcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHh--hhhhHHHHHHH
Confidence            3344566789999999998876   4678888889998887754433344444443322  222211  12344555666


Q ss_pred             HHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHH-hcCCHHHHH
Q 010533          241 AVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-KIGIARALV  318 (508)
Q Consensus       241 ~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~-~~g~i~~Lv  318 (508)
                      ..+-.+.+.++..-...-+.|.+..|..-|+...+ -++.+.......|...           +|.+.++ +.|.|+.+.
T Consensus       193 eLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaet-----------eHgreflaQeglIdlic  261 (524)
T KOG4413|consen  193 ELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAET-----------EHGREFLAQEGLIDLIC  261 (524)
T ss_pred             HHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHH-----------hhhhhhcchhhHHHHHH
Confidence            77777777777777777788988888888876444 4455555666666532           2445565 779999999


Q ss_pred             HHHhcCC-Ch-hHHHHHH---HHHHHhhcCh----hhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCc
Q 010533          319 HSLHAGL-SS-PSLISAS---IALKAVAVND----EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSD  389 (508)
Q Consensus       319 ~lL~~~~-d~-~~~~~a~---~aL~~La~~~----e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~  389 (508)
                      +++.... ++ +......   ..+++++.-+    ..|++..-  .|+-.++++..    .+++.++.|..+|+.|-++.
T Consensus       262 nIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealii--aidgsfEmiEm----nDpdaieaAiDalGilGSnt  335 (524)
T KOG4413|consen  262 NIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALII--AIDGSFEMIEM----NDPDAIEAAIDALGILGSNT  335 (524)
T ss_pred             HHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHH--HHHhhHHhhhc----CCchHHHHHHHHHHhccCCc
Confidence            9887533 33 1111111   2234444322    22333221  12333444443    23489999999999998899


Q ss_pred             hhHHHHHhCCc--HHH-HHHHHhccCCCHHHHHHHHHHHHHHh
Q 010533          390 SNKSAIIENGG--MDK-LIVVSARFSDDASVLQEVMSIITVLS  429 (508)
Q Consensus       390 ~~k~~Iv~~Gg--l~~-Lv~lL~~~~~~~~v~e~a~~aL~~La  429 (508)
                      ++++.+.+.|-  .+. +.++..+  +...-++.+..+|.+++
T Consensus       336 eGadlllkTgppaaehllarafdq--nahakqeaaihaLaaIa  376 (524)
T KOG4413|consen  336 EGADLLLKTGPPAAEHLLARAFDQ--NAHAKQEAAIHALAAIA  376 (524)
T ss_pred             chhHHHhccCChHHHHHHHHHhcc--cccchHHHHHHHHHHhh
Confidence            99998888774  233 3333332  22334677888888877

>TIGR02270 conserved hypothetical protein

Probab=96.76  E-value=0.4  Score=50.73  Aligned_cols=224  Identities=10%  Similarity=0.010  Sum_probs=137.1

Q ss_pred             CcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChh
Q 010533          173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV  252 (508)
Q Consensus       173 Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~  252 (508)
                      .+++.|+..|+..  ++.++...+..++..  .+.        ..++..|++.|..  .+..+...+..+|+.+  +.+ 
T Consensus        54 ~a~~~L~~aL~~d--~~~ev~~~aa~al~~--~~~--------~~~~~~L~~~L~d--~~~~vr~aaa~ALg~i--~~~-  116 (410)
T TIGR02270        54 AATELLVSALAEA--DEPGRVACAALALLA--QED--------ALDLRSVLAVLQA--GPEGLCAGIQAALGWL--GGR-  116 (410)
T ss_pred             hHHHHHHHHHhhC--CChhHHHHHHHHHhc--cCC--------hHHHHHHHHHhcC--CCHHHHHHHHHHHhcC--Cch-
Confidence            4688888888654  345555433333321  111        1137889999874  4667888888888764  222 


Q ss_pred             hHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHH
Q 010533          253 VKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLIS  332 (508)
Q Consensus       253 nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~  332 (508)
                              +..+.|+.+|.+.+..+...+..++....                     ....+.|..+|++ .++.+...
T Consensus       117 --------~a~~~L~~~L~~~~p~vR~aal~al~~r~---------------------~~~~~~L~~~L~d-~d~~Vra~  166 (410)
T TIGR02270       117 --------QAEPWLEPLLAASEPPGRAIGLAALGAHR---------------------HDPGPALEAALTH-EDALVRAA  166 (410)
T ss_pred             --------HHHHHHHHHhcCCChHHHHHHHHHHHhhc---------------------cChHHHHHHHhcC-CCHHHHHH
Confidence                    35677888887665555555554443211                     1245788888874 47888899


Q ss_pred             HHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccC
Q 010533          333 ASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFS  412 (508)
Q Consensus       333 a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~  412 (508)
                      ++.+|+.+-..          ..++.|...+.+.    ++.|...|+.+|..+- .+         +++++++.+..  .
T Consensus       167 A~raLG~l~~~----------~a~~~L~~al~d~----~~~VR~aA~~al~~lG-~~---------~A~~~l~~~~~--~  220 (410)
T TIGR02270       167 ALRALGELPRR----------LSESTLRLYLRDS----DPEVRFAALEAGLLAG-SR---------LAWGVCRRFQV--L  220 (410)
T ss_pred             HHHHHHhhccc----------cchHHHHHHHcCC----CHHHHHHHHHHHHHcC-CH---------hHHHHHHHHHh--c
Confidence            99998887643          3566677666653    4589999999986653 22         23456666443  2


Q ss_pred             CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHhc
Q 010533          413 DDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMV  486 (508)
Q Consensus       413 ~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~  486 (508)
                      ...........++ .+. +++         ..++.|..+++.    +.+++.+.+++..+  +.|.....+++.
T Consensus       221 ~g~~~~~~l~~~l-al~-~~~---------~a~~~L~~ll~d----~~vr~~a~~AlG~l--g~p~av~~L~~~  277 (410)
T TIGR02270       221 EGGPHRQRLLVLL-AVA-GGP---------DAQAWLRELLQA----AATRREALRAVGLV--GDVEAAPWCLEA  277 (410)
T ss_pred             cCccHHHHHHHHH-HhC-Cch---------hHHHHHHHHhcC----hhhHHHHHHHHHHc--CCcchHHHHHHH
Confidence            2233333333333 333 333         356777777753    34889999999875  567777776664

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=96.71  E-value=0.0055  Score=49.48  Aligned_cols=88  Identities=14%  Similarity=0.202  Sum_probs=66.7

Q ss_pred             HHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhh
Q 010533          356 IDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPEN  435 (508)
Q Consensus       356 i~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~  435 (508)
                      |+.|++.|..+   +++.++..++.+|+.+-          ....++.|+++++  .+++.|+..|+.+|..+-  +   
T Consensus         1 i~~L~~~l~~~---~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~--d~~~~vr~~a~~aL~~i~--~---   60 (88)
T PF13646_consen    1 IPALLQLLQND---PDPQVRAEAARALGELG----------DPEAIPALIELLK--DEDPMVRRAAARALGRIG--D---   60 (88)
T ss_dssp             HHHHHHHHHTS---SSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHT--SSSHHHHHHHHHHHHCCH--H---
T ss_pred             CHHHHHHHhcC---CCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHc--CCCHHHHHHHHHHHHHhC--C---
Confidence            57889988543   24589999999998542          1145899999997  678999999999999873  2   


Q ss_pred             HHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 010533          436 AARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIR  470 (508)
Q Consensus       436 ~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~  470 (508)
                            ...++.|.+++.. +++..|+..|.++|.
T Consensus        61 ------~~~~~~L~~~l~~-~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 ------PEAIPALIKLLQD-DDDEVVREAAAEALG   88 (88)
T ss_dssp             ------HHTHHHHHHHHTC--SSHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHcC-CCcHHHHHHHHhhcC
Confidence                  2367888898865 456778888888873

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=96.67  E-value=0.0095  Score=48.06  Aligned_cols=88  Identities=20%  Similarity=0.255  Sum_probs=66.8

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHH
Q 010533          314 ARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKS  393 (508)
Q Consensus       314 i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~  393 (508)
                      |+.|++.|.+.+++.+...++.+|+.+...          ..++.|+.++.+    +++.|+..++.+|+.+-       
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~----------~~~~~L~~~l~d----~~~~vr~~a~~aL~~i~-------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGDP----------EAIPALIELLKD----EDPMVRRAAARALGRIG-------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTHH----------HHHHHHHHHHTS----SSHHHHHHHHHHHHCCH-------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCCH----------hHHHHHHHHHcC----CCHHHHHHHHHHHHHhC-------
Confidence            688999996666888999999988855321          247889999954    24589999999999872       


Q ss_pred             HHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHH
Q 010533          394 AIIENGGMDKLIVVSARFSDDASVLQEVMSIIT  426 (508)
Q Consensus       394 ~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~  426 (508)
                         ...+++.|.++|.. .++..++..|+.+|+
T Consensus        60 ---~~~~~~~L~~~l~~-~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 ---DPEAIPALIKLLQD-DDDEVVREAAAEALG   88 (88)
T ss_dssp             ---HHHTHHHHHHHHTC--SSHHHHHHHHHHHH
T ss_pred             ---CHHHHHHHHHHHcC-CCcHHHHHHHHhhcC
Confidence               33488999999973 345778899988874

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=96.56  E-value=0.0049  Score=45.46  Aligned_cols=55  Identities=13%  Similarity=0.128  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 010533          415 ASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNL  472 (508)
Q Consensus       415 ~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL  472 (508)
                      +.+++.|+++|.+++...++...... ...++.|+.+|+.  ++..|+..|||+|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d--~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQD--DDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTS--SSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcC--CCHHHHHHHHHHHhcC
Confidence            46899999999999877777666643 4578899998854  4569999999999875

...

>PRK14707 hypothetical protein; Provisional

Probab=96.51  E-value=0.92  Score=55.47  Aligned_cols=294  Identities=13%  Similarity=0.098  Sum_probs=173.7

Q ss_pred             HCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCC
Q 010533          171 KNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGN  250 (508)
Q Consensus       171 ~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~  250 (508)
                      ...+|-.++..+++.  ++..--..+...|+..+-.......-++..++-..+..|....+.... ..+..+|..-..++
T Consensus       203 ~~q~ia~~lNa~sKW--p~~~~c~~aa~~la~~l~~~~~l~~~~~~q~va~~lN~lsKwp~~~~C-~~a~~~lA~rl~~~  279 (2710)
T PRK14707        203 DAQGVATVLNALCKW--PDTPDCGNAVSALAERLADESRLRNELKPQELGNALNALSKWADTPVC-AAAASALAERLVDD  279 (2710)
T ss_pred             chHHHHHHHHHHhcC--CCChhHHHHHHHHHHHHcCcHHHHHhCChHHHHHHHHHHhcCCCchHH-HHHHHHHHHHHhhh
Confidence            344555666656554  233333345555655443332222334567888888888876554443 34444444433445


Q ss_pred             hhhHHHHHHcCcHHHHHHHHhcCCh-HHHHHHHHHHH-HhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChh
Q 010533          251 EVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIR-VLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSP  328 (508)
Q Consensus       251 e~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~-~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~  328 (508)
                      ..-++.+-.. .+...+..|..-.+ .+-+.|+..|. .|. +| ..        ..+ -.+.-.+...++.|.+-+|..
T Consensus       280 ~~l~~al~~q-~vanalNalSKwpd~~vc~~Aa~~la~rl~-~d-~~--------l~~-~~~~~~~~~~LNalsKWpd~~  347 (2710)
T PRK14707        280 PGLRKALDPI-NVTQALNALSKWADLPVCAEAAIALAERLA-DD-PE--------LCK-ALNARGLSTALNALSKWPDNP  347 (2710)
T ss_pred             HHHHHhcCHH-HHHHHHhhhhcCCCchHHHHHHHHHHHHHh-cc-Hh--------hhh-ccchHHHHHHHHHhhcCCCch
Confidence            5445544332 23344455554332 44444443333 333 22 11        011 112234666777777777655


Q ss_pred             HHHHHHHHH-HHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHH-hhCCchhHHHHHhCCcHHHHHH
Q 010533          329 SLISASIAL-KAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK-LAGSDSNKSAIIENGGMDKLIV  406 (508)
Q Consensus       329 ~~~~a~~aL-~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~-La~~~~~k~~Iv~~Ggl~~Lv~  406 (508)
                      +-..++.+| ..|+.+++.++.+- .-|+..+++.|..-++.   .+...+...|.. |.++++.+..+ +..++.-++.
T Consensus       348 ~C~~Aa~~LA~rl~~d~~l~~~l~-~q~~a~~lNalsKWp~~---~~c~~aa~~LA~~l~~d~~l~~~~-~~Q~van~ln  422 (2710)
T PRK14707        348 VCAAAVSALAERLVADPELRKDLE-PQGVSSVLNALSKWPDT---PVCAAAASALAEHVVDDLELRKGL-DPQGVSNALN  422 (2710)
T ss_pred             hHHHHHHHHHHHhccCHhhhcccc-hhHHHHHHhhhhcCCCc---hHHHHHHHHHHHHhccChhhhhhc-chhhHHHHHH
Confidence            556666666 56777888887765 34678889999988775   577777777766 55666666666 5567888889


Q ss_pred             HHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHhc
Q 010533          407 VSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMV  486 (508)
Q Consensus       407 lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~  486 (508)
                      .|.+++ +..++..++.+|+.-..++++.++.+--.+ +..++.++.+.|+++.. ++|+..|.-=..+.+++++.|--+
T Consensus       423 alsKWP-d~~~C~~aa~~lA~~la~d~~l~~~~~p~~-va~~LnalSKWPd~p~c-~~aa~~La~~l~~~~~l~~a~~~q  499 (2710)
T PRK14707        423 ALAKWP-DLPICGQAVSALAGRLAHDTELCKALDPIN-VTQALDALSKWPDTPIC-GQTASALAARLAHERRLRKALKPQ  499 (2710)
T ss_pred             HhhcCC-cchhHHHHHHHHHHHHhccHHHHhhcChHH-HHHHHHHhhcCCCChhH-HHHHHHHHHHhcccHHHHhhcCHH
Confidence            998876 456778888888876668888887764444 55666888889988665 445555544445667776665443


Q ss_pred             c
Q 010533          487 S  487 (508)
Q Consensus       487 g  487 (508)
                      +
T Consensus       500 ~  500 (2710)
T PRK14707        500 E  500 (2710)
T ss_pred             H
Confidence            3

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=96.50  E-value=0.058  Score=56.24  Aligned_cols=149  Identities=13%  Similarity=0.136  Sum_probs=112.9

Q ss_pred             ChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHH
Q 010533          326 SSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLI  405 (508)
Q Consensus       326 d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv  405 (508)
                      ++++...+...++++..+.+..+.+.+.+.--.++..|......  ..=.++|+..++.+..-+.+...+ -.|.+..|+
T Consensus        38 ~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~--~~ER~QALkliR~~l~~~~~~~~~-~~~vvralv  114 (371)
T PF14664_consen   38 SKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKN--DVEREQALKLIRAFLEIKKGPKEI-PRGVVRALV  114 (371)
T ss_pred             cHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCC--hHHHHHHHHHHHHHHHhcCCcccC-CHHHHHHHH
Confidence            36777888889999999999999999988766677778764332  244569999999986543332222 446678889


Q ss_pred             HHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHh
Q 010533          406 VVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVM  485 (508)
Q Consensus       406 ~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~  485 (508)
                      .+..  ..+...+..|..+|+.|+..+|+.   +.+.||+..|++.+-.++  ..+....+.++-.+. .+|..|+++..
T Consensus       115 aiae--~~~D~lr~~cletL~El~l~~P~l---v~~~gG~~~L~~~l~d~~--~~~~~~l~~~lL~lL-d~p~tR~yl~~  186 (371)
T PF14664_consen  115 AIAE--HEDDRLRRICLETLCELALLNPEL---VAECGGIRVLLRALIDGS--FSISESLLDTLLYLL-DSPRTRKYLRP  186 (371)
T ss_pred             HHHh--CCchHHHHHHHHHHHHHHhhCHHH---HHHcCCHHHHHHHHHhcc--HhHHHHHHHHHHHHh-CCcchhhhhcC
Confidence            8888  466789999999999999999875   557899999999997643  336667788888875 47888877665

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.33  E-value=0.63  Score=53.04  Aligned_cols=227  Identities=14%  Similarity=0.129  Sum_probs=132.8

Q ss_pred             HHHHCCcHHHHHHHHhcccC--CCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcC--CCC----HHHHHHH
Q 010533          168 VATKNGGVELVCSICYKMRC--GSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDG--NED----PEILNSG  239 (508)
Q Consensus       168 ~i~~~Gavp~Lv~lL~~~~~--~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~--~~~----~~v~~~a  239 (508)
                      .+.+.|++..|++++.+...  .+.+++...++.|...+.-..+|..+++.|+++.|++.|..-  .+.    .++.+..
T Consensus       112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L  191 (802)
T PF13764_consen  112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL  191 (802)
T ss_pred             HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence            55667899999999976432  345677777788877777667789999999999999988532  112    5777777


Q ss_pred             HHHHHHhhcCChhhHHHHH------HcC--------cHHHHHHHHhcCC----hHHHHHHHHHHHHhcCCCcchhhhhhc
Q 010533          240 FAVVAASATGNEVVKESYM------ELK--------IDELILEILSRQR----NDSIQSLYDAIRVLLTPDDDQVVASQV  301 (508)
Q Consensus       240 ~~~L~~l~~~~e~nr~~i~------~~G--------~i~~Lv~lL~~~~----~~~~~~A~~aL~~L~~~dd~r~~~~~a  301 (508)
                      +.++..+...  .+...+.      ...        -+..+++.+.+..    ..+.+..++.|-+|+.+++..      
T Consensus       192 L~IiE~ll~e--a~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~------  263 (802)
T PF13764_consen  192 LEIIESLLSE--ANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEK------  263 (802)
T ss_pred             HHHHHHHHHH--HhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHH------
Confidence            7776665432  2222121      112        2667777777542    267778889999999887532      


Q ss_pred             chHHHHHHhcCCHHHHHHHHhcCC-----ChhH-HHHHHHHHHHhhcC---hhhHhHHhhcCCHHHHHHHHhccCCCC--
Q 010533          302 YGYARRFAKIGIARALVHSLHAGL-----SSPS-LISASIALKAVAVN---DEICKSVAENGGIDALLRCIDDSGLQG--  370 (508)
Q Consensus       302 ~~~~~~i~~~g~i~~Lv~lL~~~~-----d~~~-~~~a~~aL~~La~~---~e~~~~i~e~Ggi~~Lv~lL~~~~~~~--  370 (508)
                         .+.+++  -..+.++ +....     +... +..-|.....+-.+   +..+..|.+.|.+...++.|..+....  
T Consensus       264 ---m~~Lv~--~F~p~l~-f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~  337 (802)
T PF13764_consen  264 ---MDALVE--HFKPYLD-FDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKN  337 (802)
T ss_pred             ---HHHHHH--HHHHhcC-hhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCccccc
Confidence               233432  1333333 22221     1112 22233333333322   245778999999998888876542210  


Q ss_pred             --c--------HHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHh
Q 010533          371 --N--------KTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSA  409 (508)
Q Consensus       371 --~--------~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~  409 (508)
                        +        ..-+..++..|+-|+......+.++..+++ +++..|.
T Consensus       338 ~~s~eWk~~l~~psLp~iL~lL~GLa~gh~~tQ~~~~~~~l-~~lH~LE  385 (802)
T PF13764_consen  338 TDSPEWKEFLSRPSLPYILRLLRGLARGHEPTQLLIAEQLL-PLLHRLE  385 (802)
T ss_pred             CCCHHHHHHhcCCcHHHHHHHHHHHHhcCHHHHHHHHhhHH-HHHHHhh
Confidence              1        112334566666666544444444555556 3334443

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=96.31  E-value=0.0086  Score=44.15  Aligned_cols=54  Identities=22%  Similarity=0.105  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 010533          373 TVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVL  428 (508)
Q Consensus       373 ~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~L  428 (508)
                      .++..|+.+|++++........-.....++.|+.+|+  .+++.|+..||++|.+|
T Consensus         2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~--d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQ--DDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTT--SSSHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHhcC
Confidence            5889999999999865433333344468999999998  56789999999999875

...

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.12  E-value=0.05  Score=53.41  Aligned_cols=100  Identities=14%  Similarity=0.168  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcC-CcchhHHHhcCChHH
Q 010533          143 LNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHD-VQSTETFRTGGGPKL  221 (508)
Q Consensus       143 ~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~-~~~~~~i~~~ggi~~  221 (508)
                      ...+..||+.|..+|--  .|+.|..+.+..++..|+++|...  ....++..++.+|.+++-+ .++...|-+.+|+..
T Consensus       105 ~~li~~aL~vLQGl~LL--Hp~Sr~lF~r~~~m~lll~LL~~~--~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~  180 (257)
T PF08045_consen  105 DSLIALALRVLQGLCLL--HPPSRKLFHREQNMELLLDLLSPS--NPPAIQSACLDTLVCILLDSPENQRDFEELNGLST  180 (257)
T ss_pred             hHHHHHHHHHHHHHHHc--CchHHHHHhhhhhHHHHHHHhccC--CCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHH
Confidence            34567789999999987  899999999999999999999554  4678899999999776644 466788889999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHh
Q 010533          222 LVNILIDGNEDPEILNSGFAVVAAS  246 (508)
Q Consensus       222 Lv~lL~~~~~~~~v~~~a~~~L~~l  246 (508)
                      ++.++++.+.+.++.-.++..|...
T Consensus       181 v~~llk~~~~~~~~r~K~~EFL~fy  205 (257)
T PF08045_consen  181 VCSLLKSKSTDRELRLKCIEFLYFY  205 (257)
T ss_pred             HHHHHccccccHHHhHHHHHHHHHH
Confidence            9999987766666666666555544

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=96.05  E-value=1.5  Score=48.58  Aligned_cols=172  Identities=12%  Similarity=0.165  Sum_probs=111.5

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhH---HhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCch
Q 010533          314 ARALVHSLHAGLSSPSLISASIALKAVAVNDEICKS---VAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDS  390 (508)
Q Consensus       314 i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~---i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~  390 (508)
                      +..++..|++. .+.+...++.+++.|+.-=..|..   +...|.  .|.+.|..    ..++++-..+++|..+...-.
T Consensus       801 ~stiL~rLnnk-sa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylge----eypEvLgsILgAikaI~nvig  873 (1172)
T KOG0213|consen  801 CSTILWRLNNK-SAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGE----EYPEVLGSILGAIKAIVNVIG  873 (1172)
T ss_pred             HHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCc----ccHHHHHHHHHHHHHHHHhcc
Confidence            34555666653 466778888888888865555533   333343  24455543    245899888888888763211


Q ss_pred             -hHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhH--HHHHhcCcHHHHHHHHHcCCCcHHHHHHHHH
Q 010533          391 -NKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENA--ARAMEAGSGDLAIQAMLKFPNAQQLQRSSCF  467 (508)
Q Consensus       391 -~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~--~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~  467 (508)
                       -+..=--.|.+|.|.-.|+  +.+..|++++...+..+|.+.|+..  ++...  +---|+++|+.|  +..++++|..
T Consensus       874 m~km~pPi~dllPrltPILk--nrheKVqen~IdLvg~IadrgpE~v~aREWMR--IcfeLlelLkah--kK~iRRaa~n  947 (1172)
T KOG0213|consen  874 MTKMTPPIKDLLPRLTPILK--NRHEKVQENCIDLVGTIADRGPEYVSAREWMR--ICFELLELLKAH--KKEIRRAAVN  947 (1172)
T ss_pred             ccccCCChhhhcccchHhhh--hhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHHHHHH--HHHHHHHHHh
Confidence             1110011267899999998  7789999999999999999988752  22222  233577888887  3678888877


Q ss_pred             HHHHhhh-cCccchHHHHhccccccHHHHhhh
Q 010533          468 MIRNLVA-RNPENSFCSVMVSRNLSDRQRRTT  498 (508)
Q Consensus       468 aL~nL~~-~~~e~~~~~~~~g~~~~~~~~~~~  498 (508)
                      -+..++. -.|.-.-..+-.|-.+..||.|+-
T Consensus       948 TfG~IakaIGPqdVLatLlnnLkvqeRq~Rvc  979 (1172)
T KOG0213|consen  948 TFGYIAKAIGPQDVLATLLNNLKVQERQNRVC  979 (1172)
T ss_pred             hhhHHHHhcCHHHHHHHHHhcchHHHHHhchh
Confidence            7766653 235444455555778888888864

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.88  E-value=0.84  Score=51.62  Aligned_cols=149  Identities=20%  Similarity=0.200  Sum_probs=101.7

Q ss_pred             HHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHH--HHHHHHhccC
Q 010533          336 ALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMD--KLIVVSARFS  412 (508)
Q Consensus       336 aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~--~Lv~lL~~~~  412 (508)
                      +||++.. ++++|+.+.+.||+..+.+++... +..  ++...+++.|.+++...+.+.......-+.  .+-.++.+ .
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f-~~~--~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~-w  569 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESF-DNE--ELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNK-W  569 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhc-cch--hHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhh-c
Confidence            7888887 779999999999999999999976 443  899999999999986554433322222222  33334443 3


Q ss_pred             CCHHHHHHHHHHHHHHhcCChh---------hHHHHHh--------------cCcHHH-HHHHHHcCCCcHHHHHHHHHH
Q 010533          413 DDASVLQEVMSIITVLSLRSPE---------NAARAME--------------AGSGDL-AIQAMLKFPNAQQLQRSSCFM  468 (508)
Q Consensus       413 ~~~~v~e~a~~aL~~La~~~~~---------~~~~i~~--------------~G~i~~-Lv~~L~~h~~~~~vq~~A~~a  468 (508)
                      ++...--.+++.|+.+..+.++         ....+++              .....+ +..++. .+..++.+-.|.|+
T Consensus       570 ~~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~-~s~~~g~~lWal~t  648 (699)
T KOG3665|consen  570 DSIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILR-LSKSDGSQLWALWT  648 (699)
T ss_pred             chhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhc-ccCCCchHHHHHHH
Confidence            4446778899999998865321         0111111              111233 545554 34567788999999


Q ss_pred             HHHhhhcCccchHHHHhcccc
Q 010533          469 IRNLVARNPENSFCSVMVSRN  489 (508)
Q Consensus       469 L~nL~~~~~e~~~~~~~~g~~  489 (508)
                      +.|++..++++++.+...|..
T Consensus       649 i~~~~~~~~~~~~~~~~~~~~  669 (699)
T KOG3665|consen  649 IKNVLEQNKEYCKLVRESNGF  669 (699)
T ss_pred             HHHHHHcChhhhhhhHhccch
Confidence            999999999988888877753

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.87  E-value=2.8  Score=46.97  Aligned_cols=241  Identities=10%  Similarity=0.100  Sum_probs=129.3

Q ss_pred             CCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHh
Q 010533          231 EDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK  310 (508)
Q Consensus       231 ~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~  310 (508)
                      .+..+++.|+.+|+......+.|-+.+    ++..|..++....+.++++=...+-.| .|.|... -..+.|-.-.|++
T Consensus       306 ~~~~LrvlainiLgkFL~n~d~NirYv----aLn~L~r~V~~d~~avqrHr~tIleCL-~DpD~SI-krralELs~~lvn  379 (866)
T KOG1062|consen  306 SNSGLRVLAINILGKFLLNRDNNIRYV----ALNMLLRVVQQDPTAVQRHRSTILECL-KDPDVSI-KRRALELSYALVN  379 (866)
T ss_pred             CCchHHHHHHHHHHHHhcCCccceeee----ehhhHHhhhcCCcHHHHHHHHHHHHHh-cCCcHHH-HHHHHHHHHHHhc
Confidence            467888889998888766666554432    455666666655444555433223222 1222100 0111222222221


Q ss_pred             cC----CHHHHHHHHhcCCChhHHHHHHHHHHHhhc--ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Q 010533          311 IG----IARALVHSLHAGLSSPSLISASIALKAVAV--NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK  384 (508)
Q Consensus       311 ~g----~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~--~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~  384 (508)
                      ..    .+.-|+..|.+. +++...+.+..+..++.  .+++...      |+.+++.+....+..+.++..+.+.+|.+
T Consensus       380 ~~Nv~~mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W~------idtml~Vl~~aG~~V~~dv~~nll~LIa~  452 (866)
T KOG1062|consen  380 ESNVRVMVKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRWH------IDTMLKVLKTAGDFVNDDVVNNLLRLIAN  452 (866)
T ss_pred             cccHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchhH------HHHHHHHHHhcccccchhhHHHHHHHHhc
Confidence            11    235566666665 66677777766666664  3343332      35566666654443344566665555554


Q ss_pred             hhCCchhHHHHHhCCcHHHHHHHHhc----cCCCHHHHHHHHHHHHHHh---cCC--hhhHHHHHhcCcHHHHHHHHHcC
Q 010533          385 LAGSDSNKSAIIENGGMDKLIVVSAR----FSDDASVLQEVMSIITVLS---LRS--PENAARAMEAGSGDLAIQAMLKF  455 (508)
Q Consensus       385 La~~~~~k~~Iv~~Ggl~~Lv~lL~~----~~~~~~v~e~a~~aL~~La---~~~--~~~~~~i~~~G~i~~Lv~~L~~h  455 (508)
                      =. .+....++.+      |...+..    ..+.+.++.-+.|+|..-.   ...  .+--..+-+..++..|.+++..|
T Consensus       453 ~~-~e~~~y~~~r------Ly~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~  525 (866)
T KOG1062|consen  453 AF-QELHEYAVLR------LYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSH  525 (866)
T ss_pred             CC-cchhhHHHHH------HHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhc
Confidence            21 2222222221      1111110    1345667778888887532   110  11111233455678888999999


Q ss_pred             CCcHHHHHHHHHHHHHhhhc----CccchHHHHhcccccc
Q 010533          456 PNAQQLQRSSCFMIRNLVAR----NPENSFCSVMVSRNLS  491 (508)
Q Consensus       456 ~~~~~vq~~A~~aL~nL~~~----~~e~~~~~~~~g~~~~  491 (508)
                      ..+..++..|..||..|.+|    +++.++.+..-++++.
T Consensus       526 ~s~~~tk~yal~Al~KLSsr~~s~~~ri~~lI~~~~~s~~  565 (866)
T KOG1062|consen  526 SSDSTTKGYALTALLKLSSRFHSSSERIKQLISSYKSSLD  565 (866)
T ss_pred             cchHHHHHHHHHHHHHHHhhccccHHHHHHHHHHhccccc
Confidence            88888888899999999876    3456666666676554

>PRK14707 hypothetical protein; Provisional

Probab=95.66  E-value=3.5  Score=50.79  Aligned_cols=236  Identities=13%  Similarity=0.113  Sum_probs=136.5

Q ss_pred             CChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-HHHHHHHHHHH-HhcCCCcc
Q 010533          217 GGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIR-VLLTPDDD  294 (508)
Q Consensus       217 ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~-~L~~~dd~  294 (508)
                      ..+...+.-|.... +..+-..+...|..-..++..-++.+ +.-.+..++..|..=.+ .+=+.|+.+|- .|+-+++-
T Consensus       289 q~vanalNalSKwp-d~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l  366 (2710)
T PRK14707        289 INVTQALNALSKWA-DLPVCAEAAIALAERLADDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLVADPEL  366 (2710)
T ss_pred             HHHHHHHhhhhcCC-CchHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhh
Confidence            34555555665543 44444444444444334444444433 22344555566655322 33333433333 34433322


Q ss_pred             hhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHH-HhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHH
Q 010533          295 QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALK-AVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKT  373 (508)
Q Consensus       295 r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~-~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~  373 (508)
                      +.          . .+.-++..+++.|.+-++..+-..++.+|. .|..+.+.++.+- .-||.-+++.|..-+|.   .
T Consensus       367 ~~----------~-l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~-~Q~van~lnalsKWPd~---~  431 (2710)
T PRK14707        367 RK----------D-LEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLD-PQGVSNALNALAKWPDL---P  431 (2710)
T ss_pred             hc----------c-cchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcc-hhhHHHHHHHhhcCCcc---h
Confidence            11          1 123467788888888777656666666664 4555666666554 44678888999988765   6


Q ss_pred             HHHHHHHHHHH-hhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHH-HHhcCChhhHHHHHhcCcHHHHHHH
Q 010533          374 VARICCSLLSK-LAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIIT-VLSLRSPENAARAMEAGSGDLAIQA  451 (508)
Q Consensus       374 v~~~al~aL~~-La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~-~La~~~~~~~~~i~~~G~i~~Lv~~  451 (508)
                      +...+...|.. ++.+.+.+..+ +.-.|.-.+..+.++++++ +...+...|+ .|+ ++++.++.+--. .+..-+..
T Consensus       432 ~C~~aa~~lA~~la~d~~l~~~~-~p~~va~~LnalSKWPd~p-~c~~aa~~La~~l~-~~~~l~~a~~~q-~~~~~L~a  507 (2710)
T PRK14707        432 ICGQAVSALAGRLAHDTELCKAL-DPINVTQALDALSKWPDTP-ICGQTASALAARLA-HERRLRKALKPQ-EVVIALHS  507 (2710)
T ss_pred             hHHHHHHHHHHHHhccHHHHhhc-ChHHHHHHHHHhhcCCCCh-hHHHHHHHHHHHhc-ccHHHHhhcCHH-HHHHHHHH
Confidence            77777777766 45555555554 3334777888888887664 4555555555 455 678876665433 34445577


Q ss_pred             HHcCCCcHHHHHHHHHHHHHhh
Q 010533          452 MLKFPNAQQLQRSSCFMIRNLV  473 (508)
Q Consensus       452 L~~h~~~~~vq~~A~~aL~nL~  473 (508)
                      |.++|+.....+.+.|...-+.
T Consensus       508 LSK~Pd~~~c~~A~~~lA~rl~  529 (2710)
T PRK14707        508 LSKWPDTPICAEAASALAERVV  529 (2710)
T ss_pred             hhcCCCcHHHHHHHHHHHHHhc
Confidence            8889987766666666555544

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=95.65  E-value=0.096  Score=48.75  Aligned_cols=113  Identities=17%  Similarity=0.254  Sum_probs=78.4

Q ss_pred             HHHHHHHHhcCCCh-hHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCC-----CCcHHHHHHHHHHHHHhhC
Q 010533          314 ARALVHSLHAGLSS-PSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGL-----QGNKTVARICCSLLSKLAG  387 (508)
Q Consensus       314 i~~Lv~lL~~~~d~-~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~-----~~~~~v~~~al~aL~~La~  387 (508)
                      ...+++.+++.... ..+......|++  ..-...+.+++.||+..|+++|.....     ..+.++...++.+|+.|..
T Consensus        68 p~~~i~~L~~~~~~~~~L~~L~v~Lrt--~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n  145 (187)
T PF06371_consen   68 PEWYIKKLKSRPSTSKILKSLRVSLRT--NPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN  145 (187)
T ss_dssp             HHHHHHHHTTT--HHHHHHHHHHHHHH--S-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHccCccHHHHHHHHHHhcc--CCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc
Confidence            45566666654422 333333333322  123567889999999999998874321     1234788999999999999


Q ss_pred             CchhHHHHHh-CCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010533          388 SDSNKSAIIE-NGGMDKLIVVSARFSDDASVLQEVMSIITVLSL  430 (508)
Q Consensus       388 ~~~~k~~Iv~-~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~  430 (508)
                      +..+...+++ .+++..|+..|.  +.+..++..++-.|+.+|.
T Consensus       146 ~~~G~~~v~~~~~~v~~i~~~L~--s~~~~~r~~~leiL~~lc~  187 (187)
T PF06371_consen  146 TKYGLEAVLSHPDSVNLIALSLD--SPNIKTRKLALEILAALCL  187 (187)
T ss_dssp             SHHHHHHHHCSSSHHHHHHHT----TTSHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHcCcHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHC
Confidence            8888888876 567899999998  7889999999999999983

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.60  E-value=0.79  Score=52.51  Aligned_cols=245  Identities=11%  Similarity=0.042  Sum_probs=148.6

Q ss_pred             HHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHH-HhcCChHHHHHHHhcCCCCHHHHH-HHHHHHHHhhcCChh
Q 010533          175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETF-RTGGGPKLLVNILIDGNEDPEILN-SGFAVVAASATGNEV  252 (508)
Q Consensus       175 vp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i-~~~ggi~~Lv~lL~~~~~~~~v~~-~a~~~L~~l~~~~e~  252 (508)
                      +|+.++.|-+     +-....||..|+-.++--.=-..+ +.-|.-|.+++||.+.  -.++.- .++-|-.-+ .-++.
T Consensus       474 LPiVLQVLLS-----QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~--a~ELrpiLVFIWAKIL-AvD~S  545 (1387)
T KOG1517|consen  474 LPIVLQVLLS-----QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSS--ARELRPILVFIWAKIL-AVDPS  545 (1387)
T ss_pred             cchHHHHHHH-----HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccc--hHhhhhhHHHHHHHHH-hcCch
Confidence            5666665543     233455666666665422100122 2346789999999854  233332 222222223 33466


Q ss_pred             hHHHHHHcCcHHHHHHHHhcCCh--HHHHH-HHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhH
Q 010533          253 VKESYMELKIDELILEILSRQRN--DSIQS-LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPS  329 (508)
Q Consensus       253 nr~~i~~~G~i~~Lv~lL~~~~~--~~~~~-A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~  329 (508)
                      +...+++.+|-...+.+|.....  ..++. |+-.|..++.+-    ..|     .+...+.+.|..-+..|.+...+=+
T Consensus       546 CQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf----~lG-----Q~acl~~~li~iCle~lnd~~~pLL  616 (1387)
T KOG1517|consen  546 CQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF----KLG-----QKACLNGNLIGICLEHLNDDPEPLL  616 (1387)
T ss_pred             hHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHccc----chh-----HHHhccccHHHHHHHHhcCCccHHH
Confidence            66778888888888888876322  24444 555566665431    111     1222245667767777776433434


Q ss_pred             HHHHHHHHHHhhcC-hhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-----CchhHHHH--------
Q 010533          330 LISASIALKAVAVN-DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-----SDSNKSAI--------  395 (508)
Q Consensus       330 ~~~a~~aL~~La~~-~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~-----~~~~k~~I--------  395 (508)
                      +.=+|.+|+.|-.+ ++..-.=++.++.+.|+.+|.+.    -++|..+|+.+|+.+-+     .++.+..+        
T Consensus       617 rQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~----vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~  692 (1387)
T KOG1517|consen  617 RQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDP----VPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDD  692 (1387)
T ss_pred             HHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCc----cHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchh
Confidence            45677889999874 55555666888999999999863    34899999999999865     34444333        


Q ss_pred             ----HhCCc---HHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc
Q 010533          396 ----IENGG---MDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEA  442 (508)
Q Consensus       396 ----v~~Gg---l~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~  442 (508)
                          ++.-.   .-.++.+++  -+++-++.+.+-+|+.+..++..+...+.-.
T Consensus       693 ~~~~~E~~i~~~~~~ll~~vs--dgsplvr~ev~v~ls~~~~g~~~~~~~va~n  744 (1387)
T KOG1517|consen  693 ERTSIEDLIIKGLMSLLALVS--DGSPLVRTEVVVALSHFVVGYVSHLKVVAGN  744 (1387)
T ss_pred             hhhhHHHHHHhhHHHHHHHHh--ccchHHHHHHHHHHHHHHHhhHHHhHHHhhh
Confidence                11111   125555665  4568888889999999998887766655543

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=95.54  E-value=0.088  Score=55.93  Aligned_cols=174  Identities=14%  Similarity=0.094  Sum_probs=116.1

Q ss_pred             hhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHH
Q 010533          252 VVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLI  331 (508)
Q Consensus       252 ~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~  331 (508)
                      .-|.-+.++.+.++|+++|..+...+..-+...++|+..      +|+.   -...+.+.|.|..|++++.+. |..++.
T Consensus       422 ~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv------~fsn---L~~~fL~~~iIdvl~~~v~sK-DdaLqa  491 (743)
T COG5369         422 FLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVV------PFSN---LGAGFLEKSIIDVLVNLVMSK-DDALQA  491 (743)
T ss_pred             HHHhhccccchHHHHHHHhcCccceeeccchhhhhheee------eccc---hHHHHHHhhHHHHHHHHhhcc-hhhhhh
Confidence            346666677889999999987544333334555666553      2221   112345789999999999864 667889


Q ss_pred             HHHHHHHHhhcChhh--HhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC----CchhHHHHHhCCcH----
Q 010533          332 SASIALKAVAVNDEI--CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG----SDSNKSAIIENGGM----  401 (508)
Q Consensus       332 ~a~~aL~~La~~~e~--~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~----~~~~k~~Iv~~Ggl----  401 (508)
                      +..|.|..+.-+..+  +-.....-|+..++++..+.    ...|+++++.+|+|+.-    |+.-++...+..-.    
T Consensus       492 ns~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDp----c~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylf  567 (743)
T COG5369         492 NSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDP----CFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLF  567 (743)
T ss_pred             cchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCc----ccccHHHHHHHHHhcccccccccccceeEEecChHHHHH
Confidence            999999998875432  33455566788888887653    35899999999999853    23344444444333    


Q ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 010533          402 DKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAME  441 (508)
Q Consensus       402 ~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~  441 (508)
                      ..|++-|+  ..+|-..+..|-.|.++++-+.....-+.+
T Consensus       568 k~l~~k~e--~~np~~i~~~~yilv~~aa~d~~l~~~V~~  605 (743)
T COG5369         568 KRLIDKYE--ENNPMEILEGCYILVRNAACDDTLDYIVQS  605 (743)
T ss_pred             HHHHHHHH--hcCchhhhhhHHHHHHHHhccchHHHHHHh
Confidence            34555565  556777778899999998766554444443

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=95.53  E-value=1.2  Score=48.30  Aligned_cols=205  Identities=15%  Similarity=0.155  Sum_probs=123.6

Q ss_pred             CCHHHHHHHHHHHHHhhcCCcchhHHH-----hcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhh---HHHHHH
Q 010533          188 GSKRVLDSCLKTMALLVHDVQSTETFR-----TGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV---KESYME  259 (508)
Q Consensus       188 ~~~~~~~~al~aLa~l~~~~~~~~~i~-----~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~n---r~~i~~  259 (508)
                      ..++++-..++++.++.+-.    .+.     -.|.+|.|.-+|++  .+.++++.++..++.+|...++.   |+ .|.
T Consensus       658 ~ypEvLgsil~Ai~~I~sv~----~~~~mqpPi~~ilP~ltPILrn--kh~Kv~~nti~lvg~I~~~~peyi~~rE-WMR  730 (975)
T COG5181         658 DYPEVLGSILKAICSIYSVH----RFRSMQPPISGILPSLTPILRN--KHQKVVANTIALVGTICMNSPEYIGVRE-WMR  730 (975)
T ss_pred             ccHHHHHHHHHHHHHHhhhh----cccccCCchhhccccccHhhhh--hhHHHhhhHHHHHHHHHhcCcccCCHHH-HHH
Confidence            57888888888888776532    222     24678999999984  46899999999999998766542   22 221


Q ss_pred             cCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHH
Q 010533          260 LKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKA  339 (508)
Q Consensus       260 ~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~  339 (508)
                        +.--|++.|++.+.++.++|..++..++.                .|.-...+..|++-|+.   .+-+..+|.+++ 
T Consensus       731 --IcfeLvd~Lks~nKeiRR~A~~tfG~Is~----------------aiGPqdvL~~LlnnLkv---qeRq~Rvctsva-  788 (975)
T COG5181         731 --ICFELVDSLKSWNKEIRRNATETFGCISR----------------AIGPQDVLDILLNNLKV---QERQQRVCTSVA-  788 (975)
T ss_pred             --HHHHHHHHHHHhhHHHHHhhhhhhhhHHh----------------hcCHHHHHHHHHhcchH---HHHHhhhhhhhh-
Confidence              23347889999888999999988887762                23222334444444443   223345555432 


Q ss_pred             hhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC--CchhHHHHHhCCcHHHHHHHHhccCCCHHH
Q 010533          340 VAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG--SDSNKSAIIENGGMDKLIVVSARFSDDASV  417 (508)
Q Consensus       340 La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~--~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v  417 (508)
                      ++.--+.      +|-..+|=.+|.+. +.++..|+.-.+.++.-+-.  ....++-|-  -..|.|-++|.  ..++.-
T Consensus       789 I~iVae~------cgpfsVlP~lm~dY-~TPe~nVQnGvLkam~fmFeyig~~s~dYvy--~itPlleDAlt--DrD~vh  857 (975)
T COG5181         789 ISIVAEY------CGPFSVLPTLMSDY-ETPEANVQNGVLKAMCFMFEYIGQASLDYVY--SITPLLEDALT--DRDPVH  857 (975)
T ss_pred             hhhhHhh------cCchhhHHHHHhcc-cCchhHHHHhHHHHHHHHHHHHHHHHHHHHH--HhhHHHHhhhc--ccchHH
Confidence            1111122      23334444456553 34455666655555544431  222333332  24577777887  556777


Q ss_pred             HHHHHHHHHHHhcCC
Q 010533          418 LQEVMSIITVLSLRS  432 (508)
Q Consensus       418 ~e~a~~aL~~La~~~  432 (508)
                      +.-|..++.+|+++-
T Consensus       858 Rqta~nvI~Hl~Lnc  872 (975)
T COG5181         858 RQTAMNVIRHLVLNC  872 (975)
T ss_pred             HHHHHHHHHHHhcCC
Confidence            778888888888753

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=95.51  E-value=2.5  Score=46.94  Aligned_cols=222  Identities=18%  Similarity=0.197  Sum_probs=133.6

Q ss_pred             CCHHHHHHHHHHHHHhhcCCcchhHHH-hcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhh---HHHHHHcCcH
Q 010533          188 GSKRVLDSCLKTMALLVHDVQSTETFR-TGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV---KESYMELKID  263 (508)
Q Consensus       188 ~~~~~~~~al~aLa~l~~~~~~~~~i~-~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~n---r~~i~~~G~i  263 (508)
                      ..++++-..+++|.++.+-..-...+. -.+.+|.|.-+|++  .+.+|++.++..++.+|...++.   |+ .|.  +.
T Consensus       853 eypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILkn--rheKVqen~IdLvg~IadrgpE~v~aRE-WMR--Ic  927 (1172)
T KOG0213|consen  853 EYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKN--RHEKVQENCIDLVGTIADRGPEYVSARE-WMR--IC  927 (1172)
T ss_pred             ccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhh--hHHHHHHHHHHHHHHHHhcCcccCCHHH-HHH--HH
Confidence            467887777777777665221000111 24568888889974  46899999999999998655442   22 221  23


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcC
Q 010533          264 ELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN  343 (508)
Q Consensus       264 ~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~  343 (508)
                      --|+++|++++.++.++|..++..++.                .|.-...+..|++-|+.   .+-+..+|.+++ ++.-
T Consensus       928 feLlelLkahkK~iRRaa~nTfG~Iak----------------aIGPqdVLatLlnnLkv---qeRq~RvcTtva-IaIV  987 (1172)
T KOG0213|consen  928 FELLELLKAHKKEIRRAAVNTFGYIAK----------------AIGPQDVLATLLNNLKV---QERQNRVCTTVA-IAIV  987 (1172)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHH----------------hcCHHHHHHHHHhcchH---HHHHhchhhhhh-hhhh
Confidence            347789999888999999988887652                23222334444444432   223445666542 2222


Q ss_pred             hhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC--CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHH
Q 010533          344 DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG--SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEV  421 (508)
Q Consensus       344 ~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~--~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a  421 (508)
                      -|.|      |-..+|=.+|.+. .-++..|+.-.+.+|+-+-.  ....++-|-  -..|.|-++|.  ..++.-+.-|
T Consensus       988 aE~c------~pFtVLPalmneY-rtPe~nVQnGVLkalsf~FeyigemskdYiy--av~PlleDAlm--DrD~vhRqta 1056 (1172)
T KOG0213|consen  988 AETC------GPFTVLPALMNEY-RTPEANVQNGVLKALSFMFEYIGEMSKDYIY--AVTPLLEDALM--DRDLVHRQTA 1056 (1172)
T ss_pred             hhhc------CchhhhHHHHhhc-cCchhHHHHhHHHHHHHHHHHHHHHhhhHHH--HhhHHHHHhhc--cccHHHHHHH
Confidence            2333      2233344455543 33445677766666665542  334455554  25688888887  5567778889


Q ss_pred             HHHHHHHhcCChhhHHHHHhcCcHHHHHHHH
Q 010533          422 MSIITVLSLRSPENAARAMEAGSGDLAIQAM  452 (508)
Q Consensus       422 ~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L  452 (508)
                      +.++.+|+++-+       ..|..+.++.+|
T Consensus      1057 ~~~I~Hl~Lg~~-------g~g~eda~iHLL 1080 (1172)
T KOG0213|consen 1057 MNVIKHLALGVP-------GTGCEDALIHLL 1080 (1172)
T ss_pred             HHHHHHHhcCCC-------CcCcHHHHHHHH
Confidence            999999998633       245666666665

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.49  E-value=5.7  Score=44.63  Aligned_cols=321  Identities=15%  Similarity=0.141  Sum_probs=176.5

Q ss_pred             HHHHHHHhhcCCChhHHHHHHHHHH--hhcccc--CCCc-----cccCCCCCC-----------CCCChHHH-HHHHHHH
Q 010533           71 EVVKENMEDLGMEPTEALQDAIQTL--SLQGVD--LSGI-----VKCVPGESS-----------LKDNPLIQ-SLERLKQ  129 (508)
Q Consensus        71 ~~v~eni~~~~m~p~eal~~aI~q~--~~qgvd--Ls~i-----~~~~~~~~~-----------~~~~~v~~-~l~~L~~  129 (508)
                      +.+|.++.+=.-++..=-+..++-+  ..-|.+  ++.|     +-+..-...           +++|.+.. ....|+.
T Consensus        35 a~IRa~ire~~~d~~~r~rniaKLlYi~MLGypahFGqieclKLias~~f~dKRiGYLaamLlLdE~qdvllLltNslkn  114 (866)
T KOG1062|consen   35 AAIRASIREPTNDPRKRHRNIAKLLYIHMLGYPAHFGQIECLKLIASDNFLDKRIGYLAAMLLLDERQDLLLLLTNSLKN  114 (866)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCCccchhhHHHHHhcCCCchHHHHHHHHHHHHhccchHHHHHHHHHHHh
Confidence            3455566665555555555655552  666765  2222     111100000           13344443 4445555


Q ss_pred             HhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcc
Q 010533          130 LDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS  209 (508)
Q Consensus       130 ~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~  209 (508)
                      -|.++       +.-.+.-||..|..+|+.    +-   +  .+..|-+.++|+..   ++-++.+|+-+..-+....++
T Consensus       115 DL~s~-------nq~vVglAL~alg~i~s~----Em---a--rdlapeVe~Ll~~~---~~~irKKA~Lca~r~irK~P~  175 (866)
T KOG1062|consen  115 DLNSS-------NQYVVGLALCALGNICSP----EM---A--RDLAPEVERLLQHR---DPYIRKKAALCAVRFIRKVPD  175 (866)
T ss_pred             hccCC-------CeeehHHHHHHhhccCCH----HH---h--HHhhHHHHHHHhCC---CHHHHHHHHHHHHHHHHcCch
Confidence            55554       777788899999999963    21   1  23578888899883   677777776666555443221


Q ss_pred             hhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcC-----Ch---------
Q 010533          210 TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ-----RN---------  275 (508)
Q Consensus       210 ~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~-----~~---------  275 (508)
                         .+ +--++..-++|..  .+..|...++..+..+|..++++-..+.+  .++-+|..|+.-     +.         
T Consensus       176 ---l~-e~f~~~~~~lL~e--k~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~d  247 (866)
T KOG1062|consen  176 ---LV-EHFVIAFRKLLCE--KHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISD  247 (866)
T ss_pred             ---HH-HHhhHHHHHHHhh--cCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCc
Confidence               11 1123334445542  34667777778888888877766666555  677777777641     10         


Q ss_pred             -HHHHHHHHHHHHhcCCCcchhhh--------------hhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHh
Q 010533          276 -DSIQSLYDAIRVLLTPDDDQVVA--------------SQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAV  340 (508)
Q Consensus       276 -~~~~~A~~aL~~L~~~dd~r~~~--------------~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~L  340 (508)
                       -.+-...+.|+-|-.+|....+.              ++...|+- +.  .++..++.+.   ++..++.-+...|+..
T Consensus       248 PFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAI-LY--E~V~TI~~I~---~~~~LrvlainiLgkF  321 (866)
T KOG1062|consen  248 PFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAI-LY--ECVRTIMDIR---SNSGLRVLAINILGKF  321 (866)
T ss_pred             hHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHH-HH--HHHHHHHhcc---CCchHHHHHHHHHHHH
Confidence             23444666677666555332110              00011111 00  1233333332   2345666677777665


Q ss_pred             hcCh-hhHhHHhhcCC-----------H----HHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHH
Q 010533          341 AVND-EICKSVAENGG-----------I----DALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKL  404 (508)
Q Consensus       341 a~~~-e~~~~i~e~Gg-----------i----~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~L  404 (508)
                      -.++ .|.+.+. ..+           +    ..++++|++.    |..+.+.|+.++-.|. ++.|...+++     -|
T Consensus       322 L~n~d~NirYva-Ln~L~r~V~~d~~avqrHr~tIleCL~Dp----D~SIkrralELs~~lv-n~~Nv~~mv~-----eL  390 (866)
T KOG1062|consen  322 LLNRDNNIRYVA-LNMLLRVVQQDPTAVQRHRSTILECLKDP----DVSIKRRALELSYALV-NESNVRVMVK-----EL  390 (866)
T ss_pred             hcCCccceeeee-hhhHHhhhcCCcHHHHHHHHHHHHHhcCC----cHHHHHHHHHHHHHHh-ccccHHHHHH-----HH
Confidence            5433 3333221 111           1    2356677652    4589999999988876 4455555543     67


Q ss_pred             HHHHhccCCCHHHHHHHHHHHHHHhcC-ChhhHH
Q 010533          405 IVVSARFSDDASVLQEVMSIITVLSLR-SPENAA  437 (508)
Q Consensus       405 v~lL~~~~~~~~v~e~a~~aL~~La~~-~~~~~~  437 (508)
                      +..|.  +.++..+....+-+..++.+ .|++++
T Consensus       391 l~fL~--~~d~~~k~~~as~I~~laEkfaP~k~W  422 (866)
T KOG1062|consen  391 LEFLE--SSDEDFKADIASKIAELAEKFAPDKRW  422 (866)
T ss_pred             HHHHH--hccHHHHHHHHHHHHHHHHhcCCcchh
Confidence            88887  55788888888888888743 345444

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.39  E-value=3.4  Score=41.50  Aligned_cols=265  Identities=10%  Similarity=0.121  Sum_probs=140.5

Q ss_pred             hHHHHHHHHHHHHHHhCCCCChhhHHHHH-HCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChH
Q 010533          142 DLNEMMGLFDKLIELCGGNEGSVNAAVAT-KNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPK  220 (508)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~i~-~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~  220 (508)
                      .+.-...|...+..+...    ..+.+.. +.-.++.|.+++...+   +  ...|..+|.++..+..-+..+++. -+.
T Consensus        16 sP~v~~~AV~~l~~lt~~----~~~~~~~~~~~~lk~l~qL~~~~~---~--~~~a~~alVnlsq~~~l~~~ll~~-~~k   85 (353)
T KOG2973|consen   16 SPPVRKAAVEHLLGLTGR----GLQSLSKYSEALLKDLTQLLKDLD---P--AEPAATALVNLSQKEELRKKLLQD-LLK   85 (353)
T ss_pred             ChHHHHHHHHHHhhcccc----chhhhccchhhhHHHHHHHccCcc---c--ccHHHHHHHHHHhhHHHHHHHHHH-HHH
Confidence            344444455555555432    1111111 1234666777765532   1  334556677776665555555555 444


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHH------cCcHHHHHHHHhcCCh--HHHHHHHHHHHHhcCCC
Q 010533          221 LLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYME------LKIDELILEILSRQRN--DSIQSLYDAIRVLLTPD  292 (508)
Q Consensus       221 ~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~------~G~i~~Lv~lL~~~~~--~~~~~A~~aL~~L~~~d  292 (508)
                      .++..+..  ....+....|.++.|++.........+..      .|.+.........+.+  .-....+-.+.+|+...
T Consensus        86 ~l~~~~~~--p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~  163 (353)
T KOG2973|consen   86 VLMDMLTD--PQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQFE  163 (353)
T ss_pred             HHHHHhcC--cccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhhhh
Confidence            45554432  22456667777888886655544444332      3344444444443322  22334455666776433


Q ss_pred             cchhhhhhcchHHHHHH-hcCCHHHHHHHHhcCC--ChhHH-HHHHHHHHHhhcChhhHhHHhhcCCHHHHH--------
Q 010533          293 DDQVVASQVYGYARRFA-KIGIARALVHSLHAGL--SSPSL-ISASIALKAVAVNDEICKSVAENGGIDALL--------  360 (508)
Q Consensus       293 d~r~~~~~a~~~~~~i~-~~g~i~~Lv~lL~~~~--d~~~~-~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv--------  360 (508)
                      ..           |.+. +...  .+.+.|..++  +..+. ..++++|.|.+....+...+.+ -++..|-        
T Consensus       164 ~g-----------R~l~~~~k~--~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~-e~~~lLp~iLlPlag  229 (353)
T KOG2973|consen  164 AG-----------RKLLLEPKR--FPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLD-ESINLLPAILLPLAG  229 (353)
T ss_pred             hh-----------hhHhcchhh--hhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhc-chHHHHHHHHhhcCC
Confidence            22           2232 2221  1112222222  22222 3455666666666555555544 2333222        


Q ss_pred             ----------------HHHhccC-CCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHH
Q 010533          361 ----------------RCIDDSG-LQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMS  423 (508)
Q Consensus       361 ----------------~lL~~~~-~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~  423 (508)
                                      ++|.... ..+++++.+.-+.+|-.|+....+|+.+.+ -|+.++++-+..+..++.+.+.+-.
T Consensus       230 pee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~-kgvYpilRElhk~e~ded~~~ace~  308 (353)
T KOG2973|consen  230 PEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRS-KGVYPILRELHKWEEDEDIREACEQ  308 (353)
T ss_pred             ccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHh-cCchHHHHHHhcCCCcHHHHHHHHH
Confidence                            3333111 123679999999999999988888887766 4577888888888888888777666


Q ss_pred             HHHHHhcCCh
Q 010533          424 IITVLSLRSP  433 (508)
Q Consensus       424 aL~~La~~~~  433 (508)
                      ..-.|....|
T Consensus       309 vvq~Lv~~e~  318 (353)
T KOG2973|consen  309 VVQMLVRLEP  318 (353)
T ss_pred             HHHHHHhccc
Confidence            6666654444

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.35  E-value=0.2  Score=49.30  Aligned_cols=101  Identities=12%  Similarity=0.136  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHhh-CCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHH
Q 010533          373 TVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQA  451 (508)
Q Consensus       373 ~v~~~al~aL~~La-~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~  451 (508)
                      .++..|+.+|.-++ -++..+....+..++..|+++|. ....+.++-.++-+|..+...+|.|.+.+-+.+|+..++.+
T Consensus       106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~-~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l  184 (257)
T PF08045_consen  106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLS-PSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL  184 (257)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhc-cCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence            45667788888887 48999999999999999999995 24568999999999999999999999999999999999999


Q ss_pred             HHcCCCcHHHHHHHHHHHHHhhh
Q 010533          452 MLKFPNAQQLQRSSCFMIRNLVA  474 (508)
Q Consensus       452 L~~h~~~~~vq~~A~~aL~nL~~  474 (508)
                      ++..+.+..++-+...-|.-...
T Consensus       185 lk~~~~~~~~r~K~~EFL~fyl~  207 (257)
T PF08045_consen  185 LKSKSTDRELRLKCIEFLYFYLM  207 (257)
T ss_pred             HccccccHHHhHHHHHHHHHHHc
Confidence            98877777787777666655444

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=95.32  E-value=0.15  Score=48.99  Aligned_cols=189  Identities=17%  Similarity=0.169  Sum_probs=96.3

Q ss_pred             CCHHHHHHHHHHHHHhhcCC--hhhHHHHHHc--CcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHH
Q 010533          231 EDPEILNSGFAVVAASATGN--EVVKESYMEL--KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYAR  306 (508)
Q Consensus       231 ~~~~v~~~a~~~L~~l~~~~--e~nr~~i~~~--G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~  306 (508)
                      .+=+.+..++.-|..++.++  ......+.+.  ..+..++..+.+....+.+.||.++..|+..-.      ...+   
T Consensus        19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~------~~~~---   89 (228)
T PF12348_consen   19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLG------SHFE---   89 (228)
T ss_dssp             SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHG------GGGH---
T ss_pred             cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh------HhHH---
Confidence            34556667777777776655  3334444321  344555555554344688899999988874221      1111   


Q ss_pred             HHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh
Q 010533          307 RFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA  386 (508)
Q Consensus       307 ~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La  386 (508)
                      .+++ ..+|.|+..+.+. ...+...+..+|..+...-....        ..+...+.....+.++.+...++..|..+.
T Consensus        90 ~~~~-~~l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~~--------~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l  159 (228)
T PF12348_consen   90 PYAD-ILLPPLLKKLGDS-KKFIREAANNALDAIIESCSYSP--------KILLEILSQGLKSKNPQVREECAEWLAIIL  159 (228)
T ss_dssp             HHHH-HHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H----------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcHH--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            1111 3478888887764 34456667677766665422111        222344443334456789999999998875


Q ss_pred             C-CchhHHHHHh----CCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 010533          387 G-SDSNKSAIIE----NGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAM  440 (508)
Q Consensus       387 ~-~~~~k~~Iv~----~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~  440 (508)
                      . .+.....+-.    ...++.+...+.  ..++.|++.|-.++..+...-|+....+.
T Consensus       160 ~~~~~~~~~l~~~~~~~~l~~~l~~~l~--D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~  216 (228)
T PF12348_consen  160 EKWGSDSSVLQKSAFLKQLVKALVKLLS--DADPEVREAARECLWALYSHFPERAESIL  216 (228)
T ss_dssp             TT-----GGG--HHHHHHHHHHHHHHHT--SS-HHHHHHHHHHHHHHHHHH-HHH----
T ss_pred             HHccchHhhhcccchHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHCCHhhccch
Confidence            3 3311121211    124566666676  66799999999999999765555544443

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=95.31  E-value=2.3  Score=44.34  Aligned_cols=286  Identities=17%  Similarity=0.171  Sum_probs=144.7

Q ss_pred             HHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhH
Q 010533          175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVK  254 (508)
Q Consensus       175 vp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr  254 (508)
                      |..+++=+.+.  ....+++.++-.|+.-+.+.+=+..|+..|....+++.+....++. +...++.++..+...+..+-
T Consensus        23 v~ylld~l~~~--~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~-~~~l~~a~i~~~l~~d~~~~   99 (361)
T PF07814_consen   23 VEYLLDGLESS--SSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDD-ILALATAAILYVLSRDGLNM   99 (361)
T ss_pred             HHHHHhhcccC--CCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchH-HHHHHHHHHHHHHccCCcch
Confidence            44555545532  3446676666667766665555678888999999999996544433 44444444444333333333


Q ss_pred             HHHHHcCcHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhc---C-----C
Q 010533          255 ESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHA---G-----L  325 (508)
Q Consensus       255 ~~i~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~---~-----~  325 (508)
                      ..+-..+....++.++..... ....... ..        .+.       +.....+ +.+..+...+..   .     .
T Consensus       100 ~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~-~~--------~~~-------~lsk~~~-~~~~~~~~~~~~~~~~~~~~~~  162 (361)
T PF07814_consen  100 HLLLDRDSLRLLLKLLKVDKSLDVPSDSD-SS--------RKK-------NLSKVQQ-KSRSLCKELLSSGSSWKSPKPP  162 (361)
T ss_pred             hhhhchhHHHHHHHHhccccccccccchh-hh--------hhh-------hhhHHHH-HHHHHHHHHHhccccccccCCc
Confidence            333355666776777761100 0000000 00        000       0000000 011111111100   0     0


Q ss_pred             ChhHHHHHHHHHHHh--------------h-cChhhHhHHhhcCCHHHHHHHHhc----c-----CCCC---cHHHHHHH
Q 010533          326 SSPSLISASIALKAV--------------A-VNDEICKSVAENGGIDALLRCIDD----S-----GLQG---NKTVARIC  378 (508)
Q Consensus       326 d~~~~~~a~~aL~~L--------------a-~~~e~~~~i~e~Ggi~~Lv~lL~~----~-----~~~~---~~~v~~~a  378 (508)
                      .-+.+.-+..++-.+              . ..+-++..+.+.||++.+++.+.+    .     .+.+   +......+
T Consensus       163 ~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~c  242 (361)
T PF07814_consen  163 ELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERC  242 (361)
T ss_pred             ccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHH
Confidence            000111111122112              1 123457788889999999999862    1     0011   23456678


Q ss_pred             HHHHHHhh-CCchhHHHHHhCC--cHHHHHH-HHhcc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHH---HHH
Q 010533          379 CSLLSKLA-GSDSNKSAIIENG--GMDKLIV-VSARF-SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDL---AIQ  450 (508)
Q Consensus       379 l~aL~~La-~~~~~k~~Iv~~G--gl~~Lv~-lL~~~-~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~---Lv~  450 (508)
                      +.+|.+.+ .+++|...++...  .++.+.. ++... .....++..++..|.||+-+||+.+..+...+.+..   +..
T Consensus       243 l~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~  322 (361)
T PF07814_consen  243 LSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVT  322 (361)
T ss_pred             HHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHH
Confidence            88888876 4778887776542  2333333 33321 112345678999999999999988888876643322   222


Q ss_pred             HHHcC-------C--CcHHHHHHHHHHHHHhhhcCccch
Q 010533          451 AMLKF-------P--NAQQLQRSSCFMIRNLVARNPENS  480 (508)
Q Consensus       451 ~L~~h-------~--~~~~vq~~A~~aL~nL~~~~~e~~  480 (508)
                      .+..-       +  ..-+..--+..++.||+.+++.+|
T Consensus       323 ~~~~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~s~~nR  361 (361)
T PF07814_consen  323 SFFCVLSLPNYVPEESSFDILILALGLLINLVEHSEANR  361 (361)
T ss_pred             hhcccccccccccccccchHHHHHHHhHHHheeeCccCC
Confidence            22110       0  111223346778889988877664

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=95.28  E-value=2.3  Score=42.92  Aligned_cols=220  Identities=12%  Similarity=0.149  Sum_probs=136.0

Q ss_pred             HHHHHHHhhcCCcchh-HHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHc-CcHHHHHHHHhcC
Q 010533          196 CLKTMALLVHDVQSTE-TFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMEL-KIDELILEILSRQ  273 (508)
Q Consensus       196 al~aLa~l~~~~~~~~-~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~-G~i~~Lv~lL~~~  273 (508)
                      |...+..+.-+.+-|. .+.+...-..++++|+.+-.+.++|-..+-+++-+. -+....+.|-+. ..+..|+.+.+..
T Consensus       169 av~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lT-f~~~~aqdi~K~~dli~dli~iVk~~  247 (432)
T COG5231         169 AVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILT-FSKECAQDIDKMDDLINDLIAIVKER  247 (432)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444443 334555778899999988888999999988888774 444444444332 5677778888764


Q ss_pred             Ch-HHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCC--ChhHHHHHHH---HH----HHhhcC
Q 010533          274 RN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL--SSPSLISASI---AL----KAVAVN  343 (508)
Q Consensus       274 ~~-~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~--d~~~~~~a~~---aL----~~La~~  343 (508)
                      .. .+.+-.|+.+.+++. ..+       .++...+.-.|-+.+-+++|....  |.++..+.-.   .|    ..|+..
T Consensus       248 ~keKV~Rlc~~Iv~n~~d-K~p-------K~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~f  319 (432)
T COG5231         248 AKEKVLRLCCGIVANVLD-KSP-------KGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIF  319 (432)
T ss_pred             HHHHHHHHHHHHHHHHhc-ccc-------cchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            33 677888888888873 221       124445554454555555555433  4444332211   11    111111


Q ss_pred             h------------------------hhHhHHhhcC--CHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCchhHHHHH
Q 010533          344 D------------------------EICKSVAENG--GIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAII  396 (508)
Q Consensus       344 ~------------------------e~~~~i~e~G--gi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv  396 (508)
                      +                        .|...+.+..  .++.|..+++...+  + -...-||.=|..+. ..|+....+.
T Consensus       320 D~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~--n-t~i~vAc~Di~~~Vr~~PE~~~vl~  396 (432)
T COG5231         320 DNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNP--N-TWICVACSDIFQLVRASPEINAVLS  396 (432)
T ss_pred             HHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCC--C-ceEeeeHhhHHHHHHhCchHHHHHH
Confidence            1                        2223333222  35677788876433  2 24445666666665 5789999999


Q ss_pred             hCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010533          397 ENGGMDKLIVVSARFSDDASVLQEVMSIITVLS  429 (508)
Q Consensus       397 ~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La  429 (508)
                      +.||=+.++++|+  .+++.|+-+|..++-.+.
T Consensus       397 Kyg~k~~im~L~n--h~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         397 KYGVKEIIMNLIN--HDDDDVKFEALQALQTCI  427 (432)
T ss_pred             HhhhHHHHHHHhc--CCCchhhHHHHHHHHHHH
Confidence            9999999999998  678999999999987664

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.27  E-value=2.9  Score=48.17  Aligned_cols=265  Identities=15%  Similarity=0.152  Sum_probs=156.6

Q ss_pred             HHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcC-
Q 010533          151 DKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDG-  229 (508)
Q Consensus       151 ~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~-  229 (508)
                      .-|.-+.++  +.+|...+.++.++..++.++-+     .+.....+..+..|....+   .-+...-+..+|+.|+++ 
T Consensus       664 DcLisllKn--nteNqklFreanGvklilpflin-----dehRSslLrivscLitvdp---kqvhhqelmalVdtLksgm  733 (2799)
T KOG1788|consen  664 DCLISLLKN--NTENQKLFREANGVKLILPFLIN-----DEHRSSLLRIVSCLITVDP---KQVHHQELMALVDTLKSGM  733 (2799)
T ss_pred             HHHHHHHhc--cchhhHHHHhhcCceEEEEeeec-----hHHHHHHHHHHHHHhccCc---ccccHHHHHHHHHHHHhcc
Confidence            345556676  88899999999999888887743     2334444566666654331   222233355667777652 


Q ss_pred             ----CC-C----HHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh--------------HHHHHHHHHHH
Q 010533          230 ----NE-D----PEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN--------------DSIQSLYDAIR  286 (508)
Q Consensus       230 ----~~-~----~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~--------------~~~~~A~~aL~  286 (508)
                          +. +    -...+..+.+++.+..-+-..+..|.++||...|...|.....              +....... ++
T Consensus       734 vt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFr-lf  812 (2799)
T KOG1788|consen  734 VTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFR-LF  812 (2799)
T ss_pred             eeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHH-HH
Confidence                11 1    2345666788888766666677888999999998888864211              11111111 11


Q ss_pred             --HhcCCCcchhhhhh--c-chHHHHHHhcC---------CHHHHHHHHh-cCCChhH--HHHHHHHHHHhhcC------
Q 010533          287 --VLLTPDDDQVVASQ--V-YGYARRFAKIG---------IARALVHSLH-AGLSSPS--LISASIALKAVAVN------  343 (508)
Q Consensus       287 --~L~~~dd~r~~~~~--a-~~~~~~i~~~g---------~i~~Lv~lL~-~~~d~~~--~~~a~~aL~~La~~------  343 (508)
                        .+|.+..+|.-+..  . ......+.+.|         .|..|.++-- .-..+.+  -..+|..+..+-.+      
T Consensus       813 TlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavnt  892 (2799)
T KOG1788|consen  813 TLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNT  892 (2799)
T ss_pred             HHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeecc
Confidence              23334334432211  0 01122333455         1222222211 1111111  23566666655322      


Q ss_pred             -----hhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhccC-CCHH
Q 010533          344 -----DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFS-DDAS  416 (508)
Q Consensus       344 -----~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~-~~~~  416 (508)
                           +..+++|..+|++..|++.+-...    +.++-+-+.+|..++. +|.|....-..|+++.|++.+.-+. ++..
T Consensus       893 PsGqfnpdk~~iynagavRvlirslLlny----pK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgssp  968 (2799)
T KOG1788|consen  893 PSGQFNPDKQKIYNAGAVRVLIRSLLLNY----PKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSP  968 (2799)
T ss_pred             CCCCcCchHhhhcccchhHHHHHHHHhhC----hHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCch
Confidence                 234788999999999998876542    2788899999999985 8889988888999999999886443 2344


Q ss_pred             HHHHHHHHHHHHhc
Q 010533          417 VLQEVMSIITVLSL  430 (508)
Q Consensus       417 v~e~a~~aL~~La~  430 (508)
                      ..-++...+..|+.
T Consensus       969 fLshalkIvemLga  982 (2799)
T KOG1788|consen  969 FLSHALKIVEMLGA  982 (2799)
T ss_pred             HhhccHHHHHHHhh
Confidence            55666666666653

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=95.17  E-value=0.31  Score=50.96  Aligned_cols=115  Identities=9%  Similarity=0.052  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHh-cccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHH
Q 010533          143 LNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICY-KMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKL  221 (508)
Q Consensus       143 ~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~-~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~  221 (508)
                      ..-...++..+...-.+  +|..-..+.++|.++.+++.+. ..-.+..+++..--+++.++|=.+...+.+.+.+.++.
T Consensus       123 ~~v~s~a~~ivs~~I~n--ePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~  200 (379)
T PF06025_consen  123 PSVFSLAINIVSDFIHN--EPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDK  200 (379)
T ss_pred             hHHHHHHHHHHHHHHhc--CCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHH
Confidence            34445566667777766  7777789999999999999888 55446778887777777777654455688888999999


Q ss_pred             HHHHHhcCC-----CCHHHHHHHHHHHHHhhcCChhhHHHHHH
Q 010533          222 LVNILIDGN-----EDPEILNSGFAVVAASATGNEVVKESYME  259 (508)
Q Consensus       222 Lv~lL~~~~-----~~~~v~~~a~~~L~~l~~~~e~nr~~i~~  259 (508)
                      +++++.+..     ...+.....-..+-++...|+.-|..+++
T Consensus       201 ~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~  243 (379)
T PF06025_consen  201 LFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID  243 (379)
T ss_pred             HHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence            999875421     01122222223344455667777777665

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=94.94  E-value=2  Score=42.17  Aligned_cols=205  Identities=13%  Similarity=0.006  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHHHHHhCCCCChhhHHHHHH-CCcHHHHHH-HHhccc--------CCCHHHHHHHHHHHHHhhcCCcchhH
Q 010533          143 LNEMMGLFDKLIELCGGNEGSVNAAVATK-NGGVELVCS-ICYKMR--------CGSKRVLDSCLKTMALLVHDVQSTET  212 (508)
Q Consensus       143 ~~~~~~al~~L~~lc~~~~~~~~r~~i~~-~Gavp~Lv~-lL~~~~--------~~~~~~~~~al~aLa~l~~~~~~~~~  212 (508)
                      .+.-..|+.+|.+.-..  .+.-.-.+-. -|.+..|++ +.+-++        .....-.++|+..+-.++...+.|..
T Consensus         9 ~~~Re~Al~eLsk~r~~--~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~   86 (262)
T PF04078_consen    9 PETRENALLELSKKRES--FPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMP   86 (262)
T ss_dssp             HHHHHHHHHHHHHTCCC---TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHH
T ss_pred             cchHHHHHHHHHHhhhc--ccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence            33445566666554332  3333223333 566666554 333221        01235577788888888887888999


Q ss_pred             HHhcCChHHHHHHHhcCCCC---HHHHHHHHHHHHHhhcC-ChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHh
Q 010533          213 FRTGGGPKLLVNILIDGNED---PEILNSGFAVVAASATG-NEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVL  288 (508)
Q Consensus       213 i~~~ggi~~Lv~lL~~~~~~---~~v~~~a~~~L~~l~~~-~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L  288 (508)
                      |+++.-+-.|--+|...+..   +.+.-..+.+++.+... +.+.-..+.....+|..++.|..+++-...-|.-.+..+
T Consensus        87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI  166 (262)
T PF04078_consen   87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI  166 (262)
T ss_dssp             HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            99999988888888654433   34666778888888653 334455566889999999999987653333344455555


Q ss_pred             cCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHh
Q 010533          289 LTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVA  351 (508)
Q Consensus       289 ~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~  351 (508)
                      ..+|+.-.-+++..+.--.++  ..+..++.-|....++.+++.+..+-..|+.++..+..+.
T Consensus       167 L~dd~GL~yiC~t~eRf~av~--~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~  227 (262)
T PF04078_consen  167 LLDDVGLNYICQTAERFFAVA--MVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALR  227 (262)
T ss_dssp             HHSHHHHHHHTSSHHHHHHHH--HHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHH
T ss_pred             HcchhHHHHHhcCHHHHHHHH--HHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHH
Confidence            555432222223333322232  3455556555555577899999999999999887776655

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=94.90  E-value=0.13  Score=54.71  Aligned_cols=179  Identities=9%  Similarity=0.051  Sum_probs=112.0

Q ss_pred             hcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcc
Q 010533          215 TGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDD  294 (508)
Q Consensus       215 ~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~  294 (508)
                      +....++|+++|..  .+.-+.-.+...+.+....-..-+.-+.+.|.|..|+.++.+.++..+.+..|+|+.+..+++.
T Consensus       429 d~~I~elLi~~Ls~--Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~  506 (743)
T COG5369         429 DYPIVELLIDALSN--PEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQK  506 (743)
T ss_pred             ccchHHHHHHHhcC--ccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcc
Confidence            45568889999863  2333334445555555555556677888999999999999987777888899999999988875


Q ss_pred             hhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc----ChhhHhHHhhcCCH----HHHHHHHhcc
Q 010533          295 QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV----NDEICKSVAENGGI----DALLRCIDDS  366 (508)
Q Consensus       295 r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~----~~e~~~~i~e~Ggi----~~Lv~lL~~~  366 (508)
                      ...       -+-+ ..-|+..+++...+ ++-.++..+...|+|+.-    +++.+......---    +.|++.++..
T Consensus       507 ~ek-------f~~L-akig~~kvl~~~ND-pc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~  577 (743)
T COG5369         507 NEK-------FKFL-AKIGVEKVLSYTND-PCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEEN  577 (743)
T ss_pred             hhh-------hhhH-HhcCHHHHHHHhcC-cccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhc
Confidence            322       2223 33567888887653 233578888899999864    23334433333222    3344555543


Q ss_pred             CCCCcHHHHHHHHHHHHHhhCCchh-HHHHHhCCc-HHHHHHHH
Q 010533          367 GLQGNKTVARICCSLLSKLAGSDSN-KSAIIENGG-MDKLIVVS  408 (508)
Q Consensus       367 ~~~~~~~v~~~al~aL~~La~~~~~-k~~Iv~~Gg-l~~Lv~lL  408 (508)
                          ++-...+.|-.|-++|..+++ +..|.+..- +..+.+.|
T Consensus       578 ----np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil  617 (743)
T COG5369         578 ----NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL  617 (743)
T ss_pred             ----CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence                224555667777777665554 455554433 34444444

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=94.88  E-value=3.8  Score=41.81  Aligned_cols=190  Identities=18%  Similarity=0.198  Sum_probs=111.1

Q ss_pred             CChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchh
Q 010533          217 GGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQV  296 (508)
Q Consensus       217 ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~  296 (508)
                      ..++.++++|...  +..+...+.+.++...           ..-+++.|..+|...+..+...|..+|..+-       
T Consensus        43 ~~~~~~~~~l~~~--~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~-------  102 (335)
T COG1413          43 EAADELLKLLEDE--DLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGELG-------  102 (335)
T ss_pred             hhHHHHHHHHcCC--CHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC-------
Confidence            3566777777643  5666666666654431           1125778888888766666666766665432       


Q ss_pred             hhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCC-------
Q 010533          297 VASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQ-------  369 (508)
Q Consensus       297 ~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~-------  369 (508)
                                   ...++++|+.+|....+..+...+.++|+.+-...          ++..++.++.+....       
T Consensus       103 -------------~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~  159 (335)
T COG1413         103 -------------DPEAVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALD  159 (335)
T ss_pred             -------------ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhcc
Confidence                         11357888888886445667777878776665432          367777777753210       


Q ss_pred             -CcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHH
Q 010533          370 -GNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLA  448 (508)
Q Consensus       370 -~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~L  448 (508)
                       ....+...+...|..+          ...-.++.++..+.  ..+..++..+..+|..+...+         ....+.+
T Consensus       160 ~~~~~~r~~a~~~l~~~----------~~~~~~~~l~~~l~--~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l  218 (335)
T COG1413         160 AALLDVRAAAAEALGEL----------GDPEAIPLLIELLE--DEDADVRRAAASALGQLGSEN---------VEAADLL  218 (335)
T ss_pred             chHHHHHHHHHHHHHHc----------CChhhhHHHHHHHh--CchHHHHHHHHHHHHHhhcch---------hhHHHHH
Confidence             0001222222222221          12235677788787  455678888888888887543         2234555


Q ss_pred             HHHHHcCCCcHHHHHHHHHHHHHh
Q 010533          449 IQAMLKFPNAQQLQRSSCFMIRNL  472 (508)
Q Consensus       449 v~~L~~h~~~~~vq~~A~~aL~nL  472 (508)
                      ...+..  .+..++..++.+|..+
T Consensus       219 ~~~~~~--~~~~vr~~~~~~l~~~  240 (335)
T COG1413         219 VKALSD--ESLEVRKAALLALGEI  240 (335)
T ss_pred             HHHhcC--CCHHHHHHHHHHhccc
Confidence            555532  3456666666666554

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=94.88  E-value=1.6  Score=45.76  Aligned_cols=126  Identities=13%  Similarity=0.114  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHhC-CC-CChhhHHHHHH-CCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcch-hHHHhcCChHH
Q 010533          146 MMGLFDKLIELCG-GN-EGSVNAAVATK-NGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST-ETFRTGGGPKL  221 (508)
Q Consensus       146 ~~~al~~L~~lc~-~~-~~~~~r~~i~~-~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~-~~i~~~ggi~~  221 (508)
                      ++..++.+..... .. .+..-|. +.+ ......|..++++...-...+...|+..++.+.+..+.. ..+.+.|.++.
T Consensus        77 lK~lLk~l~~~~~~~~~~~~~lrn-l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~  155 (379)
T PF06025_consen   77 LKSLLKFLSHAMQHSGGFGDRLRN-LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDA  155 (379)
T ss_pred             HHHHHHHHHHHhccCCCccccccc-ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHH
Confidence            3444555555555 21 1222222 333 344555666777655456688888999999988765544 56667888899


Q ss_pred             HHHHHh-cC-CCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcC
Q 010533          222 LVNILI-DG-NEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ  273 (508)
Q Consensus       222 Lv~lL~-~~-~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~  273 (508)
                      +++.+. .. ..+.++....-.++..+|. |....+.+.+.+.++.+++++.+.
T Consensus       156 ~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~  208 (379)
T PF06025_consen  156 FLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSP  208 (379)
T ss_pred             HHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCH
Confidence            999887 33 3578888888899999986 566788899999999999999874

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=94.72  E-value=2.6  Score=42.96  Aligned_cols=187  Identities=17%  Similarity=0.195  Sum_probs=115.6

Q ss_pred             CcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChh
Q 010533          173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV  252 (508)
Q Consensus       173 Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~  252 (508)
                      -.++.++.++.+.   +..+...+...+..+-          ....++.+.++|..  .+..++..+..+|+.+  +++ 
T Consensus        43 ~~~~~~~~~l~~~---~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d--~~~~vr~~a~~aLg~~--~~~-  104 (335)
T COG1413          43 EAADELLKLLEDE---DLLVRLSAAVALGELG----------SEEAVPLLRELLSD--EDPRVRDAAADALGEL--GDP-  104 (335)
T ss_pred             hhHHHHHHHHcCC---CHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcC--CCHHHHHHHHHHHHcc--CCh-
Confidence            4677888888773   5566655555544322          23367888888863  4678888888877664  222 


Q ss_pred             hHHHHHHcCcHHHHHHHHhc-CChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCCh----
Q 010533          253 VKESYMELKIDELILEILSR-QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSS----  327 (508)
Q Consensus       253 nr~~i~~~G~i~~Lv~lL~~-~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~----  327 (508)
                              -.++.|+..|.. ++..+...+.++|..+-                    ...++.+|+..+......    
T Consensus       105 --------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~--------------------~~~a~~~l~~~l~~~~~~~a~~  156 (335)
T COG1413         105 --------EAVPPLVELLENDENEGVRAAAARALGKLG--------------------DERALDPLLEALQDEDSGSAAA  156 (335)
T ss_pred             --------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcC--------------------chhhhHHHHHHhccchhhhhhh
Confidence                    257888899986 44467777888887653                    123478888888763211    


Q ss_pred             -------hHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCc
Q 010533          328 -------PSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGG  400 (508)
Q Consensus       328 -------~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Gg  400 (508)
                             .+...+..+|+.+          .+.-.++.+...+.+.    +..++..+..+|..+....        ...
T Consensus       157 ~~~~~~~~~r~~a~~~l~~~----------~~~~~~~~l~~~l~~~----~~~vr~~Aa~aL~~~~~~~--------~~~  214 (335)
T COG1413         157 ALDAALLDVRAAAAEALGEL----------GDPEAIPLLIELLEDE----DADVRRAAASALGQLGSEN--------VEA  214 (335)
T ss_pred             hccchHHHHHHHHHHHHHHc----------CChhhhHHHHHHHhCc----hHHHHHHHHHHHHHhhcch--------hhH
Confidence                   1112222222222          1223567788888763    2379999999998886543        234


Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010533          401 MDKLIVVSARFSDDASVLQEVMSIITVLS  429 (508)
Q Consensus       401 l~~Lv~lL~~~~~~~~v~e~a~~aL~~La  429 (508)
                      .+.+...+.  ..+..++..++.+|..+-
T Consensus       215 ~~~l~~~~~--~~~~~vr~~~~~~l~~~~  241 (335)
T COG1413         215 ADLLVKALS--DESLEVRKAALLALGEIG  241 (335)
T ss_pred             HHHHHHHhc--CCCHHHHHHHHHHhcccC
Confidence            566777776  556777777777666553

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=94.70  E-value=2.3  Score=41.33  Aligned_cols=160  Identities=14%  Similarity=0.046  Sum_probs=103.1

Q ss_pred             CHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcC---CCCHHHHHHHHHHHHHhhcCChh-hHHHHHHcCcHH
Q 010533          189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDG---NEDPEILNSGFAVVAASATGNEV-VKESYMELKIDE  264 (508)
Q Consensus       189 ~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~---~~~~~v~~~a~~~L~~l~~~~e~-nr~~i~~~G~i~  264 (508)
                      ..--.++++..+-+++...+.|..|+++...-.+-.+|...   ...+-+.-.++.+|+.+...++. .-..+...++||
T Consensus        92 qsnRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP  171 (293)
T KOG3036|consen   92 QSNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP  171 (293)
T ss_pred             ccchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH
Confidence            34557788888888888778889999999888888888543   34556777888999988754443 344456889999


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcCh
Q 010533          265 LILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVND  344 (508)
Q Consensus       265 ~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~  344 (508)
                      ..++.+..+++....-|.-.+..+..||+.-.=++..+|.--.+.  -.+..++.-|.+.+++.++..+..+..+|+.++
T Consensus       172 lCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~--~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp  249 (293)
T KOG3036|consen  172 LCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVA--LVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP  249 (293)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence            999999998875455455556555555542211112222111111  123334444444456677788888888888777


Q ss_pred             hhHhHH
Q 010533          345 EICKSV  350 (508)
Q Consensus       345 e~~~~i  350 (508)
                      ..+..+
T Consensus       250 rar~aL  255 (293)
T KOG3036|consen  250 RARAAL  255 (293)
T ss_pred             HHHHHH
Confidence            655543

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=94.57  E-value=0.18  Score=48.49  Aligned_cols=157  Identities=15%  Similarity=0.114  Sum_probs=85.5

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHhhcChhh-HhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhH
Q 010533          314 ARALVHSLHAGLSSPSLISASIALKAVAVNDEI-CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNK  392 (508)
Q Consensus       314 i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~-~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k  392 (508)
                      +..++..+.+- ...+...+|.++..|+..-.. ....++ ..++.|++.+.+.    +..+...|-.+|..+..+-...
T Consensus        55 ~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~~l~~Ll~~~~~~----~~~i~~~a~~~L~~i~~~~~~~  128 (228)
T PF12348_consen   55 LDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYAD-ILLPPLLKKLGDS----KKFIREAANNALDAIIESCSYS  128 (228)
T ss_dssp             -HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHGGG-------HHHHHHHHHHHHHHHTTS-H-
T ss_pred             HHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHccc----cHHHHHHHHHHHHHHHHHCCcH
Confidence            44555554432 245788999999988863211 222221 2357777777653    3478899999999987643311


Q ss_pred             HHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHh----cCcHHHHHHHHHcCCCcHHHHHHHHHH
Q 010533          393 SAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAME----AGSGDLAIQAMLKFPNAQQLQRSSCFM  468 (508)
Q Consensus       393 ~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~----~G~i~~Lv~~L~~h~~~~~vq~~A~~a  468 (508)
                      ..++    ++.+...+.  ..++.++..++..|..+....+.....+-.    ...++.+..++..  .++.|++.|-.+
T Consensus       129 ~~~~----~~~l~~~~~--~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D--~~~~VR~~Ar~~  200 (228)
T PF12348_consen  129 PKIL----LEILSQGLK--SKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSD--ADPEVREAAREC  200 (228)
T ss_dssp             -HHH----HHHHHHHTT---S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTS--S-HHHHHHHHHH
T ss_pred             HHHH----HHHHHHHHh--CCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCC--CCHHHHHHHHHH
Confidence            1111    345555565  568999999999999887665522222222    2245566666643  568898888888


Q ss_pred             HHHhhhcCccchHHHH
Q 010533          469 IRNLVARNPENSFCSV  484 (508)
Q Consensus       469 L~nL~~~~~e~~~~~~  484 (508)
                      +..+-...|+....++
T Consensus       201 ~~~l~~~~~~~a~~~~  216 (228)
T PF12348_consen  201 LWALYSHFPERAESIL  216 (228)
T ss_dssp             HHHHHHHH-HHH----
T ss_pred             HHHHHHHCCHhhccch
Confidence            8888776676666665

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.46  E-value=0.9  Score=48.83  Aligned_cols=225  Identities=16%  Similarity=0.105  Sum_probs=122.6

Q ss_pred             HHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHh-cCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHH
Q 010533          177 LVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRT-GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKE  255 (508)
Q Consensus       177 ~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~-~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~  255 (508)
                      .|...|+.   ...+++..|-.+|..++.+-.+.+..++ ..-++.++.-+.  ++++.++..|+.||.+.......  .
T Consensus       212 GLf~~LsD---~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~--ss~~~iq~~al~Wi~efV~i~g~--~  284 (675)
T KOG0212|consen  212 GLFNMLSD---SSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQ--SSEPEIQLKALTWIQEFVKIPGR--D  284 (675)
T ss_pred             HHHHHhcC---CcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhcccccc--CCcHHHHHHHHHHHHHHhcCCCc--c
Confidence            34444444   3567777777777777654444455544 345677776664  56899999999999987654332  2


Q ss_pred             HH-HHcCcHHHHHHHHhcCChH-H---HHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcC-CHHHHHHHHhcCCChhH
Q 010533          256 SY-MELKIDELILEILSRQRND-S---IQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIG-IARALVHSLHAGLSSPS  329 (508)
Q Consensus       256 ~i-~~~G~i~~Lv~lL~~~~~~-~---~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g-~i~~Lv~lL~~~~d~~~  329 (508)
                      .+ .-.|++..++..+...... .   -+..-..|..+.......      .    . .+.| .++.|...+... ..+.
T Consensus       285 ~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~------~----~-id~~~ii~vl~~~l~~~-~~~t  352 (675)
T KOG0212|consen  285 LLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLK------E----E-IDYGSIIEVLTKYLSDD-REET  352 (675)
T ss_pred             hhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhc------c----c-cchHHHHHHHHHHhhcc-hHHH
Confidence            22 2446666666666554331 1   111222233333211000      0    0 1111 234444444432 1233


Q ss_pred             HHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHh
Q 010533          330 LISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSA  409 (508)
Q Consensus       330 ~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~  409 (508)
                      ...+..-+..|-.+-.+.-........+.|++-|.+..|    +|+..++.+|++++.++...      +-.+.+.++|+
T Consensus       353 ri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd----~vvl~~L~lla~i~~s~~~~------~~~~fl~sLL~  422 (675)
T KOG0212|consen  353 RIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSD----EVVLLALSLLASICSSSNSP------NLRKFLLSLLE  422 (675)
T ss_pred             HHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchh----HHHHHHHHHHHHHhcCcccc------cHHHHHHHHHH
Confidence            333333233333322222222223345667777876433    89999999999999755443      34677778887


Q ss_pred             ccCCCHH-HHHHHHHHHHHHhc
Q 010533          410 RFSDDAS-VLQEVMSIITVLSL  430 (508)
Q Consensus       410 ~~~~~~~-v~e~a~~aL~~La~  430 (508)
                      .+..++. +...+.-.++.||.
T Consensus       423 ~f~e~~~~l~~Rg~lIIRqlC~  444 (675)
T KOG0212|consen  423 MFKEDTKLLEVRGNLIIRQLCL  444 (675)
T ss_pred             HHhhhhHHHHhhhhHHHHHHHH
Confidence            7766654 44567777788874

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=94.18  E-value=7.3  Score=39.54  Aligned_cols=226  Identities=11%  Similarity=0.098  Sum_probs=133.9

Q ss_pred             CCHHHHHHHHHHHHHhhcCChhhH----HHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHH
Q 010533          231 EDPEILNSGFAVVAASATGNEVVK----ESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYAR  306 (508)
Q Consensus       231 ~~~~v~~~a~~~L~~l~~~~e~nr----~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~  306 (508)
                      ++..|...+|+-++.+..+++.|-    ..++.+|..+.++..+-..++++-.+|...|..++.-.+          -..
T Consensus        94 ddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpa----------ale  163 (524)
T KOG4413|consen   94 DDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPA----------ALE  163 (524)
T ss_pred             CcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHH----------HHH
Confidence            456677777777777666666442    234588999999999988777888888888988875432          122


Q ss_pred             HHHhcCCHHHH--HHHHhcCCChhHHHHHHHHHHHh-hcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHH
Q 010533          307 RFAKIGIARAL--VHSLHAGLSSPSLISASIALKAV-AVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLS  383 (508)
Q Consensus       307 ~i~~~g~i~~L--v~lL~~~~d~~~~~~a~~aL~~L-a~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~  383 (508)
                      .|.++..++++  .++.... +.-+...+...+-.+ +..++.....-.+|-+..|..=|... +  +.-|...++....
T Consensus       164 aiFeSellDdlhlrnlaakc-ndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGt-e--DtLVianciElvt  239 (524)
T KOG4413|consen  164 AIFESELLDDLHLRNLAAKC-NDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGT-E--DTLVIANCIELVT  239 (524)
T ss_pred             HhcccccCChHHHhHHHhhh-hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCC-c--ceeehhhHHHHHH
Confidence            34444444433  2222222 222334444444444 34666666666778777777767642 3  2367788999999


Q ss_pred             HhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHH----hcC--Chh-hHHHHHhcCcHHHHHHHHHcCC
Q 010533          384 KLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVL----SLR--SPE-NAARAMEAGSGDLAIQAMLKFP  456 (508)
Q Consensus       384 ~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~L----a~~--~~~-~~~~i~~~G~i~~Lv~~L~~h~  456 (508)
                      .|+...-.++-+.+.|.|+.|...+....++|--...++.....+    +.-  .++ .+.++.-  .++-..+.+.  .
T Consensus       240 eLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealii--aidgsfEmiE--m  315 (524)
T KOG4413|consen  240 ELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALII--AIDGSFEMIE--M  315 (524)
T ss_pred             HHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHH--HHHhhHHhhh--c
Confidence            999888888888888999999998875455554444333322222    111  111 1111110  1222223332  3


Q ss_pred             CcHHHHHHHHHHHHHhhh
Q 010533          457 NAQQLQRSSCFMIRNLVA  474 (508)
Q Consensus       457 ~~~~vq~~A~~aL~nL~~  474 (508)
                      +++..+..|.-++.-|.+
T Consensus       316 nDpdaieaAiDalGilGS  333 (524)
T KOG4413|consen  316 NDPDAIEAAIDALGILGS  333 (524)
T ss_pred             CCchHHHHHHHHHHhccC
Confidence            566777777777777654

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=94.11  E-value=11  Score=43.00  Aligned_cols=266  Identities=12%  Similarity=0.132  Sum_probs=152.6

Q ss_pred             CHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHH
Q 010533          189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILE  268 (508)
Q Consensus       189 ~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~  268 (508)
                      ..+++..-..+|+..+.-++....-.++...|.++.+...+++++.+...+-.++..++- .+.|-.. +..-.||.|+.
T Consensus       543 s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q-~~~~~g~-m~e~~iPslis  620 (1005)
T KOG2274|consen  543 SDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQ-IAANYGP-MQERLIPSLIS  620 (1005)
T ss_pred             cHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHH-HHHhhcc-hHHHHHHHHHH
Confidence            457777778888888876644455566778899999888888999887777777666642 2222111 22347999999


Q ss_pred             HHhcCCh----HHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc-C
Q 010533          269 ILSRQRN----DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-N  343 (508)
Q Consensus       269 lL~~~~~----~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~-~  343 (508)
                      +|.....    ....-+...|..+.+...+..        ...+.. -+.|++.++.-...|.+.+.++..+|+.+-. .
T Consensus       621 il~~~~~~~~~~l~~~aidvLttvvr~tp~pL--------~~~l~~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~  691 (1005)
T KOG2274|consen  621 VLQLNADKAPAGLCAIAIDVLTTVLRNTPSPL--------PNLLIC-YAFPAVAKITLHSDDHETLQNATECLRALISVT  691 (1005)
T ss_pred             HHcCcccccCchhhHHHHHHHHHHHhcCCCCc--------cHHHHH-HHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence            9987652    444446666665554432211        122322 3688998887544467788899899977654 3


Q ss_pred             hhhHhHHhhcCCHH--HHHHHHhccCCCCcHHHHHHHHHHHHHhh-------C--CchhHHHHHhCCcHHHHHHHHhccC
Q 010533          344 DEICKSVAENGGID--ALLRCIDDSGLQGNKTVARICCSLLSKLA-------G--SDSNKSAIIENGGMDKLIVVSARFS  412 (508)
Q Consensus       344 ~e~~~~i~e~Ggi~--~Lv~lL~~~~~~~~~~v~~~al~aL~~La-------~--~~~~k~~Iv~~Ggl~~Lv~lL~~~~  412 (508)
                      .+-...-...+|..  .++..+..--+   ++.-+.++...+.|.       +  -..|-+.|     +..++.=|.. .
T Consensus       692 ~eq~~t~~~e~g~~~~yImqV~sqLLd---p~~sds~a~~VG~lV~tLit~a~~el~~n~d~I-----L~Avisrmq~-a  762 (1005)
T KOG2274|consen  692 LEQLLTWHDEPGHNLWYIMQVLSQLLD---PETSDSAAAFVGPLVLTLITHASSELGPNLDQI-----LRAVISRLQQ-A  762 (1005)
T ss_pred             HHHHHhhccCCCccHHHHHHHHHHHcC---CccchhHHHHHhHHHHHHHHHHHHHhchhHHHH-----HHHHHHHHHH-h
Confidence            33332233344444  44433332111   011122222333221       1  12222223     2233333332 3


Q ss_pred             CCHHHHHHHHHHHHHHhcCChhhHHHHHhc----CcHHHHHHHHHcCCCcH---------HHH-HHHHHHHHHhhh
Q 010533          413 DDASVLQEVMSIITVLSLRSPENAARAMEA----GSGDLAIQAMLKFPNAQ---------QLQ-RSSCFMIRNLVA  474 (508)
Q Consensus       413 ~~~~v~e~a~~aL~~La~~~~~~~~~i~~~----G~i~~Lv~~L~~h~~~~---------~vq-~~A~~aL~nL~~  474 (508)
                      ...++..+-..+++.|...+++..-.++-.    +|-+.+--.|....++.         +|+ +.-|-|+.++.+
T Consensus       763 e~lsviQsLi~VfahL~~t~~~~~l~FL~Slp~~~g~~AlefVMteW~srqhl~~g~ye~kv~i~alc~al~~~~~  838 (1005)
T KOG2274|consen  763 ETLSVIQSLIMVFAHLVHTDLDQLLNFLSSLPGPTGEPALEFVMTEWTSRQHLYFGEYEGKVSIKALCKALQHLIS  838 (1005)
T ss_pred             hhHHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCCCCCcHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHhhhc
Confidence            457888899999999998887765555543    56666655564433222         122 456888888875

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=94.07  E-value=1.3  Score=47.51  Aligned_cols=163  Identities=15%  Similarity=0.197  Sum_probs=112.1

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHH
Q 010533          314 ARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKS  393 (508)
Q Consensus       314 i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~  393 (508)
                      ...+++++.++.. ..+..+...|..|+.+..+...++...|+..|..++.+....-+.++...++.++..|-.+.-..=
T Consensus        85 a~~i~e~l~~~~~-~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW  163 (713)
T KOG2999|consen   85 AKRIMEILTEGNN-ISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW  163 (713)
T ss_pred             HHHHHHHHhCCCc-HHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence            3455667777643 333447778888999999999999999999999999986552245788888888877653221111


Q ss_pred             HHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhh
Q 010533          394 AIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV  473 (508)
Q Consensus       394 ~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~  473 (508)
                      ..+...+|.....+.+...-+..+...|++.|-++...++.....+.+.--+..|+..++.  .+..++..|...|..|.
T Consensus       164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~--~n~~i~~~aial~nal~  241 (713)
T KOG2999|consen  164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQV--SNQRIQTCAIALLNALF  241 (713)
T ss_pred             eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHh--cchHHHHHHHHHHHHHH
Confidence            1112223334444443223456788899999999999888888888888888999998875  46778888666665565


Q ss_pred             hcCccc
Q 010533          474 ARNPEN  479 (508)
Q Consensus       474 ~~~~e~  479 (508)
                      .+-|+-
T Consensus       242 ~~a~~~  247 (713)
T KOG2999|consen  242 RKAPDD  247 (713)
T ss_pred             hhCChH
Confidence            554444

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=94.06  E-value=3.2  Score=45.14  Aligned_cols=251  Identities=10%  Similarity=0.026  Sum_probs=129.3

Q ss_pred             CcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCH--HHHHHHHHHHHHhhcCC
Q 010533          173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDP--EILNSGFAVVAASATGN  250 (508)
Q Consensus       173 Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~--~v~~~a~~~L~~l~~~~  250 (508)
                      +.+|.+-.+|.+.......++..+..+.-++.+       .+...|++.++.-+-..-.+.  .....++..++.++...
T Consensus       213 yiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~-------~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~a  285 (569)
T KOG1242|consen  213 YIVPILPSILTNFGDKINKVREAAVEAAKAIMR-------CLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCA  285 (569)
T ss_pred             hHHhhHHHHHHHhhccchhhhHHHHHHHHHHHH-------hcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhc
Confidence            456777777766533444554444444333321       122234433332211000011  22234455555443222


Q ss_pred             hhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHH
Q 010533          251 EVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSL  330 (508)
Q Consensus       251 e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~  330 (508)
                      +.. -......++|.|.++|.....++++.+..+|..++.--++.           .|-  -.+|.|++.+..-. . -.
T Consensus       286 p~q-Ls~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~-----------dI~--~~ip~Lld~l~dp~-~-~~  349 (569)
T KOG1242|consen  286 PKQ-LSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNP-----------DIQ--KIIPTLLDALADPS-C-YT  349 (569)
T ss_pred             hHH-HHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccH-----------HHH--HHHHHHHHHhcCcc-c-ch
Confidence            222 22334578999999998877788888888888777433321           111  24678888776432 1 11


Q ss_pred             HHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhc
Q 010533          331 ISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSAR  410 (508)
Q Consensus       331 ~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~  410 (508)
                      ......|..=.    +.. .++.-.+..++-+|.......+..+.+.++..+.|++.--+....+.  -.+|.|+.-++.
T Consensus       350 ~e~~~~L~~tt----FV~-~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~la--pfl~~Llp~lk~  422 (569)
T KOG1242|consen  350 PECLDSLGATT----FVA-EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLA--PFLPSLLPGLKE  422 (569)
T ss_pred             HHHHHhhccee----eee-eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHh--hhHHHHhhHHHH
Confidence            22222222111    111 12334556666666654444456888999999999985322222221  234444444432


Q ss_pred             c--CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCC
Q 010533          411 F--SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPN  457 (508)
Q Consensus       411 ~--~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~  457 (508)
                      -  ...|.++.-+..+|..+-.|- .+..   ..+.+|.+.+.+..+..
T Consensus       423 ~~~d~~PEvR~vaarAL~~l~e~~-g~~~---f~d~~p~l~e~~~~~k~  467 (569)
T KOG1242|consen  423 NLDDAVPEVRAVAARALGALLERL-GEVS---FDDLIPELSETLTSEKS  467 (569)
T ss_pred             HhcCCChhHHHHHHHHHHHHHHHH-Hhhc---ccccccHHHHhhccchh
Confidence            1  225899999999998776432 1111   14566777776655543

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=94.02  E-value=9.6  Score=41.45  Aligned_cols=273  Identities=11%  Similarity=-0.027  Sum_probs=143.1

Q ss_pred             HCCcHHHHHHHHhcccC----CCH---HHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCC--CCHHHHHHHHH
Q 010533          171 KNGGVELVCSICYKMRC----GSK---RVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGN--EDPEILNSGFA  241 (508)
Q Consensus       171 ~~Gavp~Lv~lL~~~~~----~~~---~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~--~~~~v~~~a~~  241 (508)
                      -++++|.|++||.+.+.    +|.   .-...||+..+.++.+.          .+.+++.+.+.+-  ++-.-.+.+.-
T Consensus       319 v~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~----------i~~pVl~FvEqni~~~~w~nreaavm  388 (858)
T COG5215         319 VADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDK----------IMRPVLGFVEQNIRSESWANREAAVM  388 (858)
T ss_pred             HHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhH----------hHHHHHHHHHHhccCchhhhHHHHHH
Confidence            45689999999976321    122   22445777667665542          3445666665432  22333455666


Q ss_pred             HHHHhhcC-ChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHH-hcCCHHHHHH
Q 010533          242 VVAASATG-NEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-KIGIARALVH  319 (508)
Q Consensus       242 ~L~~l~~~-~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~-~~g~i~~Lv~  319 (508)
                      +++.+..+ ++..+..++ ..++|.+...+....--+...++|.+..++.             +.-.+. ..|-+++.+.
T Consensus       389 AfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad-------------~va~~i~p~~Hl~~~vs  454 (858)
T COG5215         389 AFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIAD-------------HVAMIISPCGHLVLEVS  454 (858)
T ss_pred             HhhhhhcCccHHHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHH-------------HHHHhcCccccccHHHH
Confidence            66665332 233333444 2567777776653222566678899988862             222333 4466666555


Q ss_pred             HHhcCC-C-hhHHHHHHHHHHHhhcC-h-------hhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC--
Q 010533          320 SLHAGL-S-SPSLISASIALKAVAVN-D-------EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG--  387 (508)
Q Consensus       320 lL~~~~-d-~~~~~~a~~aL~~La~~-~-------e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~--  387 (508)
                      ...-|- | +....+.||+.-+|... .       .....+.. ..+..|+..-.....  +......+..+|+.|..  
T Consensus       455 a~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~-ai~~~Lv~~t~~~~N--e~n~R~s~fsaLgtli~~~  531 (858)
T COG5215         455 ASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYL-AILNALVKGTELALN--ESNLRVSLFSALGTLILIC  531 (858)
T ss_pred             HHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHH-HHHHHHHHHHHhhcc--chhHHHHHHHHHHHHHhhc
Confidence            544332 2 56678889998887632 1       11111111 012223322221111  12677788899988853  


Q ss_pred             CchhHHHHHhCCcHHHHHHHHhc-------------cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHc
Q 010533          388 SDSNKSAIIENGGMDKLIVVSAR-------------FSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLK  454 (508)
Q Consensus       388 ~~~~k~~Iv~~Ggl~~Lv~lL~~-------------~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~  454 (508)
                      .|.....++  |.......-|..             -.....+|.+-|.+|..+..+.+.-...+- .-...+++++|++
T Consensus       532 ~d~V~~~~a--~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~-D~lm~Lf~r~les  608 (858)
T COG5215         532 PDAVSDILA--GFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVE-DQLMELFIRILES  608 (858)
T ss_pred             chhHHHHHH--HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHH-HHHHHHHHHHHhc
Confidence            334444333  222222221110             011346788888898888755443222221 2246778888876


Q ss_pred             CCCcHHHHHHHHHHHHHhhh
Q 010533          455 FPNAQQLQRSSCFMIRNLVA  474 (508)
Q Consensus       455 h~~~~~vq~~A~~aL~nL~~  474 (508)
                      . +...+-...-.+|.+|..
T Consensus       609 ~-~~t~~~~dV~~aIsal~~  627 (858)
T COG5215         609 T-KPTTAFGDVYTAISALST  627 (858)
T ss_pred             c-CCchhhhHHHHHHHHHHH
Confidence            4 333445566667777764

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=93.71  E-value=2.1  Score=48.42  Aligned_cols=308  Identities=12%  Similarity=0.102  Sum_probs=166.0

Q ss_pred             hhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcc---hhHHHhcCChHHHHHHHhcCCC----CHHH
Q 010533          163 SVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS---TETFRTGGGPKLLVNILIDGNE----DPEI  235 (508)
Q Consensus       163 ~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~---~~~i~~~ggi~~Lv~lL~~~~~----~~~v  235 (508)
                      ..+...+++.|+|..|+.+=+-..  .--=+..||-.|.++-.-.+.   -+.++-...+..-+++|.....    +..+
T Consensus       384 ~kfa~~fv~~~gi~kll~vpr~s~--~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~~~~~l~~cs~~~~~~~~~~  461 (1516)
T KOG1832|consen  384 RKFAAMFVERRGILKLLAVPRVSE--TFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKLAIELLDCSQDQARKNSAL  461 (1516)
T ss_pred             hHHHHHHHHhhhhHHHhcCCCchh--hhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHHHHHHHHhcchhhccchHHH
Confidence            445567888888888776532210  000123456666554221110   0233344456666667764311    1122


Q ss_pred             HHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcC-------Ch------------HHHHHHHHHHHHhc-CCCcch
Q 010533          236 LNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ-------RN------------DSIQSLYDAIRVLL-TPDDDQ  295 (508)
Q Consensus       236 ~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~-------~~------------~~~~~A~~aL~~L~-~~dd~r  295 (508)
                      --.++...+.+       -+.|-..+++..|+.+|+.-       .+            ..-+..|.+|+.-- ..=-++
T Consensus       462 ff~~~f~frai-------l~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC~alR~Yf~AHl~Ik  534 (1516)
T KOG1832|consen  462 FFAAAFVFRAI-------LDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFHTCFALRQYFRAHLLIK  534 (1516)
T ss_pred             HHHHHHHHHHH-------HHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            22222222211       12233345666666666431       11            12234577776421 100011


Q ss_pred             hhhhhcchHHHHHHhcCCHHHHHHHHhcCCC-----hhHHHHHHHHHHHhhc-Ch-------hhHhHHhhcCCHHHHHHH
Q 010533          296 VVASQVYGYARRFAKIGIARALVHSLHAGLS-----SPSLISASIALKAVAV-ND-------EICKSVAENGGIDALLRC  362 (508)
Q Consensus       296 ~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d-----~~~~~~a~~aL~~La~-~~-------e~~~~i~e~Ggi~~Lv~l  362 (508)
                           ...+.+.-...|+.+..+.-+.....     ....+.+||-+-.+-. -+       +-...+...||+..++.+
T Consensus       535 -----ve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l  609 (1516)
T KOG1832|consen  535 -----VESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLEL  609 (1516)
T ss_pred             -----HHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHH
Confidence                 11223333355666666654444321     2345666665533321 11       224456778999999988


Q ss_pred             HhccCCCC----cHHHHHHHHHHHHHhhCCchhHHHHHhC--------CcHHHHHHHHh-ccCC-CHHHHHHHHHHHHHH
Q 010533          363 IDDSGLQG----NKTVARICCSLLSKLAGSDSNKSAIIEN--------GGMDKLIVVSA-RFSD-DASVLQEVMSIITVL  428 (508)
Q Consensus       363 L~~~~~~~----~~~v~~~al~aL~~La~~~~~k~~Iv~~--------Ggl~~Lv~lL~-~~~~-~~~v~e~a~~aL~~L  428 (508)
                      ....++-.    -.+++..|+.+|.-+..-|+.+.+++.+        .|+..|++.-. ++.- +|+++..|+.+|-|+
T Consensus       610 ~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIinc  689 (1516)
T KOG1832|consen  610 CQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINC  689 (1516)
T ss_pred             HhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhhee
Confidence            76543211    1378888899888887778887777643        26666666433 3333 799999999999998


Q ss_pred             hcCChhhHH-----------------------------------HHHhcCcHHHHHHHHHc--CCCcH-HHHHHHHHHHH
Q 010533          429 SLRSPENAA-----------------------------------RAMEAGSGDLAIQAMLK--FPNAQ-QLQRSSCFMIR  470 (508)
Q Consensus       429 a~~~~~~~~-----------------------------------~i~~~G~i~~Lv~~L~~--h~~~~-~vq~~A~~aL~  470 (508)
                      ...-|+++.                                   ++....||..|+.+|+.  -+..+ .+++-||.+|.
T Consensus       690 Vc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~  769 (1516)
T KOG1832|consen  690 VCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLL  769 (1516)
T ss_pred             ecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHh
Confidence            754433322                                   22345788899998853  22333 36677999998


Q ss_pred             HhhhcCccchHHHHh
Q 010533          471 NLVARNPENSFCSVM  485 (508)
Q Consensus       471 nL~~~~~e~~~~~~~  485 (508)
                      -|+ |+++.|+.+-.
T Consensus       770 GLa-R~~tVrQIltK  783 (1516)
T KOG1832|consen  770 GLA-RDDTVRQILTK  783 (1516)
T ss_pred             ccc-cCcHHHHHHHh
Confidence            885 78888877654

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=93.41  E-value=3.6  Score=44.31  Aligned_cols=157  Identities=15%  Similarity=0.177  Sum_probs=102.0

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCC---hhHHHHHHHHHHHh
Q 010533          264 ELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLS---SPSLISASIALKAV  340 (508)
Q Consensus       264 ~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d---~~~~~~a~~aL~~L  340 (508)
                      ..+.+++.++++..+..+...|..|+.+          +..++.++...++..|..++.++..   .+++.....+++.|
T Consensus        86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d----------~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~el  155 (713)
T KOG2999|consen   86 KRIMEILTEGNNISKMEALKELDSLSLD----------PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSEL  155 (713)
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHhhcccc----------HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHH
Confidence            4566778887776666677777777754          2456788888999999999998764   34444444444443


Q ss_pred             hcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC-chhHHHHHhCCcHHHHHHHHhccCCCHHHHH
Q 010533          341 AVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGS-DSNKSAIIENGGMDKLIVVSARFSDDASVLQ  419 (508)
Q Consensus       341 a~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~-~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e  419 (508)
                      ...--.....+...+|..+..+....  ..+..+...|+..|.++..+ +.-.+.|.+.--++.|+..++  .++..++.
T Consensus       156 mehgvvsW~~~~~~fV~~~a~~V~~~--~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq--~~n~~i~~  231 (713)
T KOG2999|consen  156 MEHGVVSWESVSNDFVVSMASYVNAK--REDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQ--VSNQRIQT  231 (713)
T ss_pred             HhhceeeeeecccHHHHHHHHHHhhh--hhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHH--hcchHHHH
Confidence            22111111222222333334444321  11346888999999999754 456666767677999999998  77889999


Q ss_pred             HHHHHHHHHhcCChh
Q 010533          420 EVMSIITVLSLRSPE  434 (508)
Q Consensus       420 ~a~~aL~~La~~~~~  434 (508)
                      +|.+.|-.|-.+-|+
T Consensus       232 ~aial~nal~~~a~~  246 (713)
T KOG2999|consen  232 CAIALLNALFRKAPD  246 (713)
T ss_pred             HHHHHHHHHHhhCCh
Confidence            999888888765543

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=93.41  E-value=0.39  Score=41.54  Aligned_cols=107  Identities=18%  Similarity=0.183  Sum_probs=70.9

Q ss_pred             HHHHHHHHHH-HHhhcCCChhHHH----HHHHHHHhhccccCCCccccCCCCCCCCCChHHHHHHHHHHHhhcCCCCCCh
Q 010533           66 QEAFDEVVKE-NMEDLGMEPTEAL----QDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSD  140 (508)
Q Consensus        66 Qetfd~~v~e-ni~~~~m~p~eal----~~aI~q~~~qgvdLs~i~~~~~~~~~~~~~~v~~~l~~L~~~l~~~~~~~~~  140 (508)
                      .-|||+.+.| +-..++-+|-+--    ++=+..|+.+++                     ..++.|...+..+      
T Consensus         3 ltsfdeY~~El~sg~L~WSP~H~se~FW~ENa~kf~~~~~---------------------~llk~L~~lL~~s------   55 (119)
T PF11698_consen    3 LTSFDEYLSELESGHLEWSPVHKSEKFWRENADKFEENNF---------------------ELLKKLIKLLDKS------   55 (119)
T ss_dssp             --HHHHHHHHHHHT-----GGGG-HHHHHHHSGGGSSGGG---------------------HHHHHHHHHH-SH------
T ss_pred             CCcHHHHHHHHhcCCccccCCCCCccHHHHHHHHHHHccc---------------------HHHHHHHHHHccC------
Confidence            4589888888 3445555564432    222223333333                     2467777777432      


Q ss_pred             hhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhh
Q 010533          141 EDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLV  204 (508)
Q Consensus       141 ~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~  204 (508)
                      .|...+.-|+..|..+++.  .|.-|..+.+.|+=..+..|+.+   +|+++...||.++..++
T Consensus        56 ~d~~~laVac~Dig~~vr~--~p~gr~ii~~lg~K~~vM~Lm~h---~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   56 DDPTTLAVACHDIGEFVRH--YPNGRNIIEKLGAKERVMELMNH---EDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHHHHHHHHHHHH---GGGHHHHHHHSHHHHHHHHTS----SSHHHHHHHHHHHHHHH
T ss_pred             CCcceeehhhcchHHHHHH--ChhHHHHHHhcChHHHHHHHhcC---CCHHHHHHHHHHHHHHH
Confidence            2777788899999999987  88889999999999999999998   58999999999987654

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.34  E-value=7.7  Score=43.16  Aligned_cols=215  Identities=11%  Similarity=0.107  Sum_probs=136.8

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhh
Q 010533          220 KLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVAS  299 (508)
Q Consensus       220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~  299 (508)
                      +.++.+|.  +.-+-+...|+.++..++.+.++.   +.  .++|.|++-|..+++.++.+|..+++-|++-+ ++    
T Consensus       147 ~Dv~tLL~--sskpYvRKkAIl~lykvFLkYPeA---lr--~~FprL~EkLeDpDp~V~SAAV~VICELArKn-Pk----  214 (877)
T KOG1059|consen  147 DDVFTLLN--SSKPYVRKKAILLLYKVFLKYPEA---LR--PCFPRLVEKLEDPDPSVVSAAVSVICELARKN-PQ----  214 (877)
T ss_pred             HHHHHHHh--cCchHHHHHHHHHHHHHHHhhhHh---Hh--hhHHHHHHhccCCCchHHHHHHHHHHHHHhhC-Cc----
Confidence            44666775  345778888888888877665543   11  35788999999888899999999999998643 11    


Q ss_pred             hcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcC-hhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHH
Q 010533          300 QVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DEICKSVAENGGIDALLRCIDDSGLQGNKTVARIC  378 (508)
Q Consensus       300 ~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~-~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~a  378 (508)
                          +.-     -.-|.+..+|.+.++.=++..+....++|+-- +...+.     -+++|.++|.+...   ..++=+|
T Consensus       215 ----nyL-----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~A---mSLlYEC  277 (877)
T KOG1059|consen  215 ----NYL-----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVA---MSLLYEC  277 (877)
T ss_pred             ----ccc-----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHH---HHHHHHH
Confidence                111     23488888888766554666666666667653 333232     35788888875321   2455555


Q ss_pred             HHHHHH--h-hCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcC
Q 010533          379 CSLLSK--L-AGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKF  455 (508)
Q Consensus       379 l~aL~~--L-a~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h  455 (508)
                      ..++-.  + +|.+++-..|-  =++..|-.++.  .+++.++--+|-++.-+...+|...++-     -+.++++|.. 
T Consensus       278 vNTVVa~s~s~g~~d~~asiq--LCvqKLr~fie--dsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~D-  347 (877)
T KOG1059|consen  278 VNTVVAVSMSSGMSDHSASIQ--LCVQKLRIFIE--DSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDD-  347 (877)
T ss_pred             HHHheeehhccCCCCcHHHHH--HHHHHHhhhhh--cCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhcc-
Confidence            544422  2 23334433332  24566666666  5678888888888888887777654442     3567777754 


Q ss_pred             CCcHHHHHHHHHHHHHhhh
Q 010533          456 PNAQQLQRSSCFMIRNLVA  474 (508)
Q Consensus       456 ~~~~~vq~~A~~aL~nL~~  474 (508)
                       .++.++-.|.-.|.-|++
T Consensus       348 -kD~SIRlrALdLl~gmVs  365 (877)
T KOG1059|consen  348 -KDESIRLRALDLLYGMVS  365 (877)
T ss_pred             -CCchhHHHHHHHHHHHhh
Confidence             456677777777777764

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=93.33  E-value=4.3  Score=46.88  Aligned_cols=179  Identities=16%  Similarity=0.059  Sum_probs=118.4

Q ss_pred             HHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHH-HHHHHHHHHhhcCCcchhHHHhcCChHHHHHHH
Q 010533          148 GLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVL-DSCLKTMALLVHDVQSTETFRTGGGPKLLVNIL  226 (508)
Q Consensus       148 ~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~-~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL  226 (508)
                      .||.-|.+...-  ++=....+..-|..|..++||++....=..++ .=-.+.|+   -|..-+.++++.+|-..++..|
T Consensus       489 RAL~LL~RFLDl--GpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILA---vD~SCQ~dLvKe~g~~YF~~vL  563 (1387)
T KOG1517|consen  489 RALVLLARFLDL--GPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILA---VDPSCQADLVKENGYKYFLQVL  563 (1387)
T ss_pred             HHHHHHHHHhcc--chhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHh---cCchhHHHHHhccCceeEEEEe
Confidence            344444444433  44444566778999999999998632111111 11112222   2322247899999999999998


Q ss_pred             hcC-CCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCcchhhhhhcchH
Q 010533          227 IDG-NEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGY  304 (508)
Q Consensus       227 ~~~-~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~~L~~~dd~r~~~~~a~~~  304 (508)
                      ... .-+++-..-++-+|+.++....-..+...+.+.+..-++.|+.+.. -..+-.|-.|..|=.|-          +.
T Consensus       564 ~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~----------~~  633 (1387)
T KOG1517|consen  564 DPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDY----------DE  633 (1387)
T ss_pred             cCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhc----------ch
Confidence            762 2244666777888888888777777888888999999999988533 34444666676664332          23


Q ss_pred             HHHHH-hcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc
Q 010533          305 ARRFA-KIGIARALVHSLHAGLSSPSLISASIALKAVAV  342 (508)
Q Consensus       305 ~~~i~-~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~  342 (508)
                      +|-.. +.++.+.|+.+|.+. -+++...+..||+.+..
T Consensus       634 Arw~G~r~~AhekL~~~LsD~-vpEVRaAAVFALgtfl~  671 (1387)
T KOG1517|consen  634 ARWSGRRDNAHEKLILLLSDP-VPEVRAAAVFALGTFLS  671 (1387)
T ss_pred             hhhccccccHHHHHHHHhcCc-cHHHHHHHHHHHHHHhc
Confidence            44444 668899999999863 47888999999988766

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.30  E-value=0.95  Score=50.47  Aligned_cols=213  Identities=12%  Similarity=0.082  Sum_probs=136.9

Q ss_pred             hhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHH
Q 010533          251 EVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSL  330 (508)
Q Consensus       251 e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~  330 (508)
                      ..-|...++-|+...|+.+.....+.....+.-+|..       .++|.+    .+   ....++++.+++..-...--.
T Consensus       494 K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~-------~i~f~~----~~---~~~v~~~~~s~~~~d~~~~en  559 (748)
T KOG4151|consen  494 KYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAG-------KIDFPG----ER---SYEVVKPLDSALHNDEKGLEN  559 (748)
T ss_pred             HHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhh-------hcCCCC----Cc---hhhhhhhhcchhhhhHHHHHH
Confidence            3345566788999999988876655555555555541       111211    00   013567777766542211223


Q ss_pred             HHHHHHHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCc-hhHHHHHh-CCcHHHHHHH
Q 010533          331 ISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSD-SNKSAIIE-NGGMDKLIVV  407 (508)
Q Consensus       331 ~~a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~-~~k~~Iv~-~Ggl~~Lv~l  407 (508)
                      .+...++.||+. ++..+++|...-+++.+-+++.+  +  ++.+++.++..+-||..++ -....|++ ..+++.....
T Consensus       560 ~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~e--e--~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~  635 (748)
T KOG4151|consen  560 FEALEALTNLASISESDRQKILKEKALGKIEELMTE--E--NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLN  635 (748)
T ss_pred             HHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhc--c--cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHH
Confidence            567788999998 44556778877666666666554  2  3489999999999998665 45666777 5578877777


Q ss_pred             HhccCCCHHHHHHHHHHHHHHhcCChhhHH-HHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHh
Q 010533          408 SARFSDDASVLQEVMSIITVLSLRSPENAA-RAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVM  485 (508)
Q Consensus       408 L~~~~~~~~v~e~a~~aL~~La~~~~~~~~-~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~  485 (508)
                      +.  .........+++++..|+.-...++. ..-...+.+.++.++..  .+..+|.-+...+.|+.....+....+..
T Consensus       636 ~e--~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~--~~~~~qhrgl~~~ln~~~~~~ei~~~~~~  710 (748)
T KOG4151|consen  636 LE--VADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQD--EDDEIQHRGLVIILNLFEALFEIAEKIFE  710 (748)
T ss_pred             HH--hhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcC--chhhhhhhhhhhhhhHHHHHHHHHHHhcc
Confidence            76  45566777888888877765555555 33334567777777743  45788988888888876555555555543

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=93.27  E-value=9.6  Score=43.47  Aligned_cols=236  Identities=14%  Similarity=0.065  Sum_probs=140.6

Q ss_pred             CCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCcchhhhhhcchHHHHH
Q 010533          230 NEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRF  308 (508)
Q Consensus       230 ~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i  308 (508)
                      +..+.+.-.+++++...+.....+.+.+-.  .+...+..+.-+.. .+.-.|++++...+...              .+
T Consensus       461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~--fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~--------------vl  524 (1005)
T KOG2274|consen  461 QESPFLLLRAFLTISKFSSSTVINPQLLQH--FLNATVNALTMDVPPPVKISAVRAFCGYCKVK--------------VL  524 (1005)
T ss_pred             ccCHHHHHHHHHHHHHHHhhhccchhHHHH--HHHHHHHhhccCCCCchhHHHHHHHHhccCce--------------ec
Confidence            455666667777777654332333332211  22333444443322 34445666666655211              11


Q ss_pred             H--hcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHh
Q 010533          309 A--KIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKL  385 (508)
Q Consensus       309 ~--~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~L  385 (508)
                      .  .-+.++.|+++...+ ..+++.-+..+|+..+. +++.. .-.++-..|.++.++....+.+  .|...+-.++..|
T Consensus       525 ~~~~p~ild~L~qlas~~-s~evl~llmE~Ls~vv~~dpef~-as~~skI~P~~i~lF~k~s~DP--~V~~~~qd~f~el  600 (1005)
T KOG2274|consen  525 LSLQPMILDGLLQLASKS-SDEVLVLLMEALSSVVKLDPEFA-ASMESKICPLTINLFLKYSEDP--QVASLAQDLFEEL  600 (1005)
T ss_pred             cccchHHHHHHHHHcccc-cHHHHHHHHHHHHHHhccChhhh-hhhhcchhHHHHHHHHHhcCCc--hHHHHHHHHHHHH
Confidence            1  236788888887765 35677777888877776 44433 3334456788888877665544  7777777778777


Q ss_pred             hCCchhHHHHHhCCcHHHHHHHHhccCC--CHHHHHHHHHHHHHHhcCCh-hhHHHHHhcCcHHHHHHHHHcCCCcHHHH
Q 010533          386 AGSDSNKSAIIENGGMDKLIVVSARFSD--DASVLQEVMSIITVLSLRSP-ENAARAMEAGSGDLAIQAMLKFPNAQQLQ  462 (508)
Q Consensus       386 a~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~--~~~v~e~a~~aL~~La~~~~-~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq  462 (508)
                      ....++...+.+ -.+|.|++.|.....  .+..+.-+.-.|..+..+.| ..-+.++. -..|++.++. -|+++..+-
T Consensus       601 ~q~~~~~g~m~e-~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~-~~FpaVak~t-lHsdD~~tl  677 (1005)
T KOG2274|consen  601 LQIAANYGPMQE-RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC-YAFPAVAKIT-LHSDDHETL  677 (1005)
T ss_pred             HHHHHhhcchHH-HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH-HHhHHhHhhe-eecCChHHH
Confidence            654444333322 468999999983221  14555666666665553332 23333332 3578888887 588887777


Q ss_pred             HHHHHHHHHhhhcCccchHHHHhccc
Q 010533          463 RSSCFMIRNLVARNPENSFCSVMVSR  488 (508)
Q Consensus       463 ~~A~~aL~nL~~~~~e~~~~~~~~g~  488 (508)
                      ..|-.+||-+.+.++++....-.+++
T Consensus       678 Q~~~EcLra~Is~~~eq~~t~~~e~g  703 (1005)
T KOG2274|consen  678 QNATECLRALISVTLEQLLTWHDEPG  703 (1005)
T ss_pred             HhHHHHHHHHHhcCHHHHHhhccCCC
Confidence            78888999998877777666655544

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=93.24  E-value=1.2  Score=41.98  Aligned_cols=119  Identities=13%  Similarity=0.119  Sum_probs=78.0

Q ss_pred             HHHHHHHHHhhcChhhHhHHhhcC----------------CHHHHHHHHhccCC--CCcHHHHHHHHHHHHHhhCCchhH
Q 010533          331 ISASIALKAVAVNDEICKSVAENG----------------GIDALLRCIDDSGL--QGNKTVARICCSLLSKLAGSDSNK  392 (508)
Q Consensus       331 ~~a~~aL~~La~~~e~~~~i~e~G----------------gi~~Lv~lL~~~~~--~~~~~v~~~al~aL~~La~~~~~k  392 (508)
                      .-+|-.|+||+..++.|..+.+.+                .+..|++++..+.+  ....+-......+|.|++..+++|
T Consensus        13 dl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR   92 (192)
T PF04063_consen   13 DLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGR   92 (192)
T ss_pred             HHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHH
Confidence            446667788888877777555332                35667777765111  001256678899999999999999


Q ss_pred             HHHHhCC--c--HHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc---CcHHHHHHHH
Q 010533          393 SAIIENG--G--MDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEA---GSGDLAIQAM  452 (508)
Q Consensus       393 ~~Iv~~G--g--l~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~---G~i~~Lv~~L  452 (508)
                      ..+.+..  .  +..|+..+. |. +..=++.++++|.|+|...+.+ ..++..   +.++.|+--+
T Consensus        93 ~~~l~~~~~~~~l~kLl~ft~-~~-s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPL  156 (192)
T PF04063_consen   93 QFFLDPQRYDGPLQKLLPFTE-HK-SVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPL  156 (192)
T ss_pred             HHHhCchhhhhHHHHHHHHhc-cC-cHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhc
Confidence            9998654  2  455555554 33 6666788999999999855544 444442   4455555444

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=92.78  E-value=18  Score=41.06  Aligned_cols=160  Identities=11%  Similarity=0.020  Sum_probs=99.7

Q ss_pred             chHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCH--HHHHHHHhccCCCCcHHHHHHHH
Q 010533          302 YGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGI--DALLRCIDDSGLQGNKTVARICC  379 (508)
Q Consensus       302 ~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi--~~Lv~lL~~~~~~~~~~v~~~al  379 (508)
                      +++++.+.+.||+..+...++.+...+....+.+.+.+++...++.......--+  ..+-.++....   ..+..-.++
T Consensus       503 ~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~---~~ersY~~~  579 (699)
T KOG3665|consen  503 PETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWD---SIERSYNAA  579 (699)
T ss_pred             HHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---hhhHHHHHH
Confidence            5688999999999999999999866778889999999998755432211100001  12222333321   125556777


Q ss_pred             HHHHHhhCCch------hH----HHHHh--------------CCcHHH-HHHHHhccCCCHHHHHHHHHHHHHHhcCChh
Q 010533          380 SLLSKLAGSDS------NK----SAIIE--------------NGGMDK-LIVVSARFSDDASVLQEVMSIITVLSLRSPE  434 (508)
Q Consensus       380 ~aL~~La~~~~------~k----~~Iv~--------------~Ggl~~-Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~  434 (508)
                      +.|+.+..+.+      .+    +.+++              ..-..+ +..++. .+..+..+-.|.+++.+++..+++
T Consensus       580 siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~-~s~~~g~~lWal~ti~~~~~~~~~  658 (699)
T KOG3665|consen  580 SILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILR-LSKSDGSQLWALWTIKNVLEQNKE  658 (699)
T ss_pred             HHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhc-ccCCCchHHHHHHHHHHHHHcChh
Confidence            77777653211      11    11111              111223 444443 244567789999999999999999


Q ss_pred             hHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHH
Q 010533          435 NAARAMEAGSGDLAIQAMLKFPNAQQLQRSSC  466 (508)
Q Consensus       435 ~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~  466 (508)
                      +++.+.+.|+++.+.+... ++....++..+-
T Consensus       659 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  689 (699)
T KOG3665|consen  659 YCKLVRESNGFELIENIRV-LSEVVDVKEEAV  689 (699)
T ss_pred             hhhhhHhccchhhhhhcch-hHHHHHHHHHHH
Confidence            9999999999999887654 222344444443

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=92.49  E-value=1.7  Score=45.89  Aligned_cols=139  Identities=15%  Similarity=0.132  Sum_probs=95.6

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCC---C--hhHHHHHHH-HHHH
Q 010533          266 ILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL---S--SPSLISASI-ALKA  339 (508)
Q Consensus       266 Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~---d--~~~~~~a~~-aL~~  339 (508)
                      +..+++..+++-+-+|.-....++.+||+-.      .+.|.+.++=|.+-+-.+|++.+   |  +.+...+.. .|..
T Consensus        16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a------~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLac   89 (698)
T KOG2611|consen   16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVA------LNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLAC   89 (698)
T ss_pred             HHHHhcccChHHHHHHHHHHHHHhcccchhh------hhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHH
Confidence            4445554454444555555556778887632      34566678888888889998754   2  245444443 3566


Q ss_pred             hhcChhhH--hHHhhcCCHHHHHHHHhccCCCC---cHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccC
Q 010533          340 VAVNDEIC--KSVAENGGIDALLRCIDDSGLQG---NKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFS  412 (508)
Q Consensus       340 La~~~e~~--~~i~e~Ggi~~Lv~lL~~~~~~~---~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~  412 (508)
                      .+..+|..  ..+++  .||.|+..|....+..   +-.+++.+-.+|..+|+.+.+...++..||++.+-++-.-|+
T Consensus        90 FC~~pElAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~  165 (698)
T KOG2611|consen   90 FCRVPELASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPD  165 (698)
T ss_pred             HhCChhhccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCC
Confidence            67777653  35554  5899999998654331   234889999999999999999999999999999987665443

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=92.39  E-value=0.25  Score=42.72  Aligned_cols=81  Identities=17%  Similarity=0.316  Sum_probs=60.7

Q ss_pred             hhHhHHhhcC--CHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHH
Q 010533          345 EICKSVAENG--GIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEV  421 (508)
Q Consensus       345 e~~~~i~e~G--gi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a  421 (508)
                      ||..++.+..  .++.|+++|..+.   ++.++.-||.=|+.++. .|..+..+-+.|+=+.++++|.  .+++.|+.+|
T Consensus        32 ENa~kf~~~~~~llk~L~~lL~~s~---d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~--h~d~eVr~eA  106 (119)
T PF11698_consen   32 ENADKFEENNFELLKKLIKLLDKSD---DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMN--HEDPEVRYEA  106 (119)
T ss_dssp             HHSGGGSSGGGHHHHHHHHHH-SHH---HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS---SSHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHccCC---CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhc--CCCHHHHHHH
Confidence            4444554433  3678899996542   45788889999999875 6888888878888899999998  5799999999


Q ss_pred             HHHHHHHhc
Q 010533          422 MSIITVLSL  430 (508)
Q Consensus       422 ~~aL~~La~  430 (508)
                      +-++--|..
T Consensus       107 L~avQklm~  115 (119)
T PF11698_consen  107 LLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999887754

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.35  E-value=16  Score=40.81  Aligned_cols=93  Identities=10%  Similarity=0.047  Sum_probs=50.5

Q ss_pred             CHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHH
Q 010533          189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILE  268 (508)
Q Consensus       189 ~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~  268 (508)
                      ++-..+-||+.++++-.     .++.++ --+.+-++|.+.++..-+...++-++..+-.++++   .+-..+.+..++.
T Consensus       124 n~~fv~LAL~~I~niG~-----re~~ea-~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~  194 (938)
T KOG1077|consen  124 NPTFVCLALHCIANIGS-----REMAEA-FADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVH  194 (938)
T ss_pred             CcHHHHHHHHHHHhhcc-----HhHHHH-hhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHH
Confidence            45556667777766432     111111 11223366766666666777777676666555443   2223456777777


Q ss_pred             HHhcCChHHHHHHHHHHHHhcC
Q 010533          269 ILSRQRNDSIQSLYDAIRVLLT  290 (508)
Q Consensus       269 lL~~~~~~~~~~A~~aL~~L~~  290 (508)
                      +|...+..+..++...+-.|+.
T Consensus       195 LL~D~~~gv~ta~~sLi~~lvk  216 (938)
T KOG1077|consen  195 LLDDQHMGVVTAATSLIEALVK  216 (938)
T ss_pred             HhCccccceeeehHHHHHHHHH
Confidence            7765444455555555555553

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.32  E-value=5.2  Score=44.05  Aligned_cols=150  Identities=13%  Similarity=0.115  Sum_probs=97.0

Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHH
Q 010533          304 YARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLL  382 (508)
Q Consensus       304 ~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL  382 (508)
                      ....|..+|+.-++|.-|.+. =-++..++...+..|+. ++.+...     +++.|++++.+.    ..+|...|..+|
T Consensus       365 ~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE----~~~VRL~ai~aL  434 (823)
T KOG2259|consen  365 EEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDE----IEVVRLKAIFAL  434 (823)
T ss_pred             cccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccH----HHHHHHHHHHHH
Confidence            344567889989998877642 14688888888999998 4444332     467888888763    238889999999


Q ss_pred             HHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHH
Q 010533          383 SKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQ  462 (508)
Q Consensus       383 ~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq  462 (508)
                      ..++.+-     .++..-++.++..|.  ..++.++++.--.|.+.-..+-+....     .+..++..|.++|.+..  
T Consensus       435 ~~Is~~l-----~i~eeql~~il~~L~--D~s~dvRe~l~elL~~~~~~d~~~i~m-----~v~~lL~~L~kyPqDrd--  500 (823)
T KOG2259|consen  435 TMISVHL-----AIREEQLRQILESLE--DRSVDVREALRELLKNARVSDLECIDM-----CVAHLLKNLGKYPQDRD--  500 (823)
T ss_pred             HHHHHHh-----eecHHHHHHHHHHHH--hcCHHHHHHHHHHHHhcCCCcHHHHHH-----HHHHHHHHhhhCCCCcH--
Confidence            9988652     234456788899998  456888877666666554433332222     23455666777776643  


Q ss_pred             HHHHHHHHHhhhcCcc
Q 010533          463 RSSCFMIRNLVARNPE  478 (508)
Q Consensus       463 ~~A~~aL~nL~~~~~e  478 (508)
                       ..-.+++.+...++-
T Consensus       501 -~i~~cm~~iGqnH~~  515 (823)
T KOG2259|consen  501 -EILRCMGRIGQNHRR  515 (823)
T ss_pred             -HHHHHHHHHhccChh
Confidence             233345555554443

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=92.25  E-value=2.5  Score=39.10  Aligned_cols=97  Identities=13%  Similarity=0.128  Sum_probs=68.6

Q ss_pred             HHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhccc------CCCHHHHHHHHHHHHHhhcCCcchhHHHh-cCChH
Q 010533          148 GLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMR------CGSKRVLDSCLKTMALLVHDVQSTETFRT-GGGPK  220 (508)
Q Consensus       148 ~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~------~~~~~~~~~al~aLa~l~~~~~~~~~i~~-~ggi~  220 (508)
                      +.+..|+...+. ....+...+.+.||+..|+.+|....      ..+.+.+..|+..+-++++.......++. .+++.
T Consensus        83 ~~L~~L~v~Lrt-~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~  161 (187)
T PF06371_consen   83 KILKSLRVSLRT-NPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVN  161 (187)
T ss_dssp             HHHHHHHHHHHH-S-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHH
T ss_pred             HHHHHHHHHhcc-CCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHH
Confidence            556666665554 24556677778999999999986432      13446778888888888886655666666 57899


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhh
Q 010533          221 LLVNILIDGNEDPEILNSGFAVVAASA  247 (508)
Q Consensus       221 ~Lv~lL~~~~~~~~v~~~a~~~L~~l~  247 (508)
                      .++..|.  +.+..+...++..|..+|
T Consensus       162 ~i~~~L~--s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  162 LIALSLD--SPNIKTRKLALEILAALC  186 (187)
T ss_dssp             HHHHT----TTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHC--CCCHHHHHHHHHHHHHHH
Confidence            9999886  467889999999888876

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.01  E-value=24  Score=39.42  Aligned_cols=158  Identities=15%  Similarity=0.139  Sum_probs=90.1

Q ss_pred             CHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhH
Q 010533          313 IARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNK  392 (508)
Q Consensus       313 ~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k  392 (508)
                      ++..|-+.|.+. ..++..-+...+..|+........+-..  .+.++..|+...|   ..+++.++.+|..++. .+|.
T Consensus       330 ~~~~Lg~fls~r-E~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterD---vSirrravDLLY~mcD-~~Na  402 (938)
T KOG1077|consen  330 AVNQLGQFLSHR-ETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERD---VSIRRRAVDLLYAMCD-VSNA  402 (938)
T ss_pred             HHHHHHHHhhcc-cccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccc---hHHHHHHHHHHHHHhc-hhhH
Confidence            455555555542 3334333444444455543222333222  6778888885433   4899999999988874 3455


Q ss_pred             HHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCh-h------hHHHHH-------hcCcHHHHHHHHHcCCCc
Q 010533          393 SAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSP-E------NAARAM-------EAGSGDLAIQAMLKFPNA  458 (508)
Q Consensus       393 ~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~-~------~~~~i~-------~~G~i~~Lv~~L~~h~~~  458 (508)
                      ..||+     -+++.|.  ..+..++|.-..=++.|+..-- +      ..-.++       +.++--.++++   -.++
T Consensus       403 k~IV~-----elLqYL~--tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQi---VvNn  472 (938)
T KOG1077|consen  403 KQIVA-----ELLQYLE--TADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQI---VVNN  472 (938)
T ss_pred             HHHHH-----HHHHHHh--hcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhhee---Eecc
Confidence            55543     5677776  4678899988887777774211 1      111111       11112222222   2467


Q ss_pred             HHHHHHHHHHHHHhhhcCccchHHHHhccc
Q 010533          459 QQLQRSSCFMIRNLVARNPENSFCSVMVSR  488 (508)
Q Consensus       459 ~~vq~~A~~aL~nL~~~~~e~~~~~~~~g~  488 (508)
                      +++|..||.-+..... .|.....++..|+
T Consensus       473 edlq~yaak~~fe~Lq-~~a~hE~mVKvgg  501 (938)
T KOG1077|consen  473 EDLQGYAAKRLFEYLQ-KPACHENMVKVGG  501 (938)
T ss_pred             hhhhHHHHHHHHHHHh-hhHHHHHHHHhhh
Confidence            8888888887766543 4666677777764

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=91.47  E-value=11  Score=39.29  Aligned_cols=251  Identities=18%  Similarity=0.184  Sum_probs=128.5

Q ss_pred             hHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCcchhh
Q 010533          219 PKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVV  297 (508)
Q Consensus       219 i~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~~L~~~dd~r~~  297 (508)
                      +..+++=|.. .....+++.++--|..-|. ++.-|..+...|.+..+++.+....+ ....-+..++..+...|..-. 
T Consensus        23 v~ylld~l~~-~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~-   99 (361)
T PF07814_consen   23 VEYLLDGLES-SSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNM-   99 (361)
T ss_pred             HHHHHhhccc-CCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcch-
Confidence            3444444542 3345666666666666554 56778899999999999999965433 344444444444443332111 


Q ss_pred             hhhcchHHHHHHhcCCHHHHHHHHh--cCCC--hhHHHHHHHHHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcH
Q 010533          298 ASQVYGYARRFAKIGIARALVHSLH--AGLS--SPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNK  372 (508)
Q Consensus       298 ~~~a~~~~~~i~~~g~i~~Lv~lL~--~~~d--~~~~~~a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~  372 (508)
                              ..+-..+.+..++.++.  ...+  ......-..-+..... .-..|..+...+-...-    ..+.+.   
T Consensus       100 --------~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~----~~~~~l---  164 (361)
T PF07814_consen  100 --------HLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKS----PKPPEL---  164 (361)
T ss_pred             --------hhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccc----cCCccc---
Confidence                    11223455666677777  1101  0000000010111000 00111111111100000    001111   


Q ss_pred             HHHHHHHHHHHHhh---------------CCchhHHHHHhCCcHHHHHHHHhc----cC-----C-----CHHHHHHHHH
Q 010533          373 TVARICCSLLSKLA---------------GSDSNKSAIIENGGMDKLIVVSAR----FS-----D-----DASVLQEVMS  423 (508)
Q Consensus       373 ~v~~~al~aL~~La---------------~~~~~k~~Iv~~Ggl~~Lv~lL~~----~~-----~-----~~~v~e~a~~  423 (508)
                      .-+.-++.+|..++               ..+.-|+.+.+.||+..|++.+..    +.     +     +-...+.+..
T Consensus       165 sp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~  244 (361)
T PF07814_consen  165 SPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLS  244 (361)
T ss_pred             ccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHH
Confidence            22233344444331               123457888899999999999862    11     1     1125566888


Q ss_pred             HHHHHhcCChhhHHHHHhcCc--HH-HHHHHHHcC-CCcHHHHHHHHHHHHHhhhcCccchHHHHhcc
Q 010533          424 IITVLSLRSPENAARAMEAGS--GD-LAIQAMLKF-PNAQQLQRSSCFMIRNLVARNPENSFCSVMVS  487 (508)
Q Consensus       424 aL~~La~~~~~~~~~i~~~G~--i~-~Lv~~L~~h-~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~g  487 (508)
                      +|=+-+..+++|...++....  .+ .+..++... ......+..+...|-|++.+||+.+..|...+
T Consensus       245 ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~  312 (361)
T PF07814_consen  245 ILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPK  312 (361)
T ss_pred             HHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhH
Confidence            888888888888888776532  22 222233221 11123345688899999999999988877653

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.32  E-value=29  Score=39.05  Aligned_cols=250  Identities=15%  Similarity=0.112  Sum_probs=130.7

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHH
Q 010533          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (508)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~  202 (508)
                      ++.-|.+...+    ...-+...+.--++-+++.|..  .|+-+.     -.|..+..+|.+.   +..+...|..+|..
T Consensus       204 Al~Yl~~~idq----i~~~~~~LqlViVE~Irkv~~~--~p~~~~-----~~i~~i~~lL~st---ssaV~fEaa~tlv~  269 (948)
T KOG1058|consen  204 ALNYLLSNIDQ----IPSFNDSLQLVIVELIRKVCLA--NPAEKA-----RYIRCIYNLLSST---SSAVIFEAAGTLVT  269 (948)
T ss_pred             HHHHHHhhHhh----ccCccHHHHHHHHHHHHHHHhc--CHHHhh-----HHHHHHHHHHhcC---CchhhhhhcceEEE
Confidence            45555444333    2222445556667778888876  555433     3467788889884   66788888777777


Q ss_pred             hhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHH-HHHH
Q 010533          203 LVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDS-IQSL  281 (508)
Q Consensus       203 l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~-~~~A  281 (508)
                      +.++.                          .....|+.++..+..+-.+|...++-   +..|.. |+..+..+ +.-+
T Consensus       270 lS~~p--------------------------~alk~Aa~~~i~l~~kesdnnvklIv---ldrl~~-l~~~~~~il~~l~  319 (948)
T KOG1058|consen  270 LSNDP--------------------------TALKAAASTYIDLLVKESDNNVKLIV---LDRLSE-LKALHEKILQGLI  319 (948)
T ss_pred             ccCCH--------------------------HHHHHHHHHHHHHHHhccCcchhhhh---HHHHHH-HhhhhHHHHHHHH
Confidence            66543                          22223333322222222222222211   112222 22212222 2234


Q ss_pred             HHHHHHhcCCCc-chhhhhhcchHHHHHHhcCCHHHHHHHHhc-----CC---Ch--hHHHHHHHHHHHhhcC-hhhHhH
Q 010533          282 YDAIRVLLTPDD-DQVVASQVYGYARRFAKIGIARALVHSLHA-----GL---SS--PSLISASIALKAVAVN-DEICKS  349 (508)
Q Consensus       282 ~~aL~~L~~~dd-~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~-----~~---d~--~~~~~a~~aL~~La~~-~e~~~~  349 (508)
                      ...|+.|+..|- .|   +++.+.+-.++.+.-+.-+++.|+.     +.   +.  .-..-...++...|.+ ++... 
T Consensus       320 mDvLrvLss~dldvr---~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aa-  395 (948)
T KOG1058|consen  320 MDVLRVLSSPDLDVR---SKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAA-  395 (948)
T ss_pred             HHHHHHcCcccccHH---HHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHH-
Confidence            555555554431 11   1223333344444445555555542     21   11  1234455667666663 44433 


Q ss_pred             HhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 010533          350 VAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVL  428 (508)
Q Consensus       350 i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~L  428 (508)
                          ..|+.|++.+.+.++    ......+..++..- ..|..|..|+     ..|++.+.. -.+..+.+.++|.+..-
T Consensus       396 ----tvV~~ll~fisD~N~----~aas~vl~FvrE~iek~p~Lr~~ii-----~~l~~~~~~-irS~ki~rgalwi~GeY  461 (948)
T KOG1058|consen  396 ----TVVSLLLDFISDSNE----AAASDVLMFVREAIEKFPNLRASII-----EKLLETFPQ-IRSSKICRGALWILGEY  461 (948)
T ss_pred             ----HHHHHHHHHhccCCH----HHHHHHHHHHHHHHHhCchHHHHHH-----HHHHHhhhh-hcccccchhHHHHHHHH
Confidence                346889999987532    44445555555544 3566666664     456666643 23567889999999998


Q ss_pred             hcCChh
Q 010533          429 SLRSPE  434 (508)
Q Consensus       429 a~~~~~  434 (508)
                      |....+
T Consensus       462 ce~~~~  467 (948)
T KOG1058|consen  462 CEGLSE  467 (948)
T ss_pred             HhhhHH
Confidence            876654

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=91.31  E-value=6.6  Score=38.68  Aligned_cols=177  Identities=13%  Similarity=0.183  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh----HHHH-HHHHHHHHhcCCCcchhhhhhcchHHHHHH
Q 010533          235 ILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN----DSIQ-SLYDAIRVLLTPDDDQVVASQVYGYARRFA  309 (508)
Q Consensus       235 v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~----~~~~-~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~  309 (508)
                      -.+.++..+..+|+ |++.|..|+++...-.|...|+..+.    +.++ ...+++..|...||..        ....+.
T Consensus        66 RVcnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~e--------vi~fLl  136 (262)
T PF04078_consen   66 RVCNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPE--------VISFLL  136 (262)
T ss_dssp             HHHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HH--------HHHHHH
T ss_pred             HHHHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHH--------HHHHHH
Confidence            34566666666665 78899999999988888888876543    4443 4678888898877643        334555


Q ss_pred             hcCCHHHHHHHHhcCCChhHHHHHHHHHHHh----------hcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHH
Q 010533          310 KIGIARALVHSLHAGLSSPSLISASIALKAV----------AVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICC  379 (508)
Q Consensus       310 ~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~L----------a~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al  379 (508)
                      +...+|..+..|+.|++- .+.-+...+..+          +...|--..+..  .+..++.-|..   .+++.+.+..+
T Consensus       137 ~tEiiplcLr~me~Gsel-SKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~--vL~~mV~~l~~---~pS~RLLKhII  210 (262)
T PF04078_consen  137 QTEIIPLCLRIMEFGSEL-SKTVATFILQKILLDDVGLNYICQTAERFFAVAM--VLNKMVEQLVK---QPSPRLLKHII  210 (262)
T ss_dssp             CTTHHHHHHHHHHHS-HH-HHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHH--HHHHHHHHHHH---S--HHHHHHHH
T ss_pred             hhchHHHHHHHHHhccHH-HHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHH--HHHHHHHHHcc---CCChhHHHHHH
Confidence            788999999999987521 122222333333          333332222221  34444444443   23569999999


Q ss_pred             HHHHHhhCCchhHHHHHhCCcHHHHHH--HHhc-cCCCHHHHHHHHHHHHHH
Q 010533          380 SLLSKLAGSDSNKSAIIENGGMDKLIV--VSAR-FSDDASVLQEVMSIITVL  428 (508)
Q Consensus       380 ~aL~~La~~~~~k~~Iv~~Ggl~~Lv~--lL~~-~~~~~~v~e~a~~aL~~L  428 (508)
                      ++--.|+.++..+.++.+  .+|..+.  .+.. ..+|+.+++.--..+.|+
T Consensus       211 rCYlRLsdnprar~aL~~--~LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl  260 (262)
T PF04078_consen  211 RCYLRLSDNPRAREALRQ--CLPDQLRDGTFSNILKDDPSTKRWLQQLLSNL  260 (262)
T ss_dssp             HHHHHHTTSTTHHHHHHH--HS-GGGTSSTTTTGGCS-HHHHHHHHHHHHHT
T ss_pred             HHHHHHccCHHHHHHHHH--hCcHHHhcHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            999999999999998874  4443221  0000 023566666555554444

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=91.08  E-value=1.8  Score=47.17  Aligned_cols=171  Identities=13%  Similarity=0.209  Sum_probs=108.4

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHh---HHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCch
Q 010533          314 ARALVHSLHAGLSSPSLISASIALKAVAVNDEICK---SVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDS  390 (508)
Q Consensus       314 i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~---~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~  390 (508)
                      +..++.+|++. .+.+...++.+.+.|+.-=.+|.   .+...|.  .|.+-|..    ..++++-..+.++..+.+.-.
T Consensus       606 vStiL~~L~~k-~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge----~ypEvLgsil~Ai~~I~sv~~  678 (975)
T COG5181         606 VSTILKLLRSK-PPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGE----DYPEVLGSILKAICSIYSVHR  678 (975)
T ss_pred             HHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCc----ccHHHHHHHHHHHHHHhhhhc
Confidence            45566677754 45666666666666654333332   2333332  23333432    345888888888877753221


Q ss_pred             h---HHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhH--HHHHhcCcHHHHHHHHHcCCCcHHHHHHH
Q 010533          391 N---KSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENA--ARAMEAGSGDLAIQAMLKFPNAQQLQRSS  465 (508)
Q Consensus       391 ~---k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~--~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A  465 (508)
                      .   +--|  .|.+|.|.-.|+  +.+..|+.+....+..+|.+.|+..  ++...  .---|++.|+.|  +..++++|
T Consensus       679 ~~~mqpPi--~~ilP~ltPILr--nkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR--IcfeLvd~Lks~--nKeiRR~A  750 (975)
T COG5181         679 FRSMQPPI--SGILPSLTPILR--NKHQKVVANTIALVGTICMNSPEYIGVREWMR--ICFELVDSLKSW--NKEIRRNA  750 (975)
T ss_pred             ccccCCch--hhccccccHhhh--hhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHHHHHh--hHHHHHhh
Confidence            1   1112  377899999998  7788999999999999999888742  22221  223567788776  56888888


Q ss_pred             HHHHHHhhh-cCccchHHHHhccccccHHHHhhhh
Q 010533          466 CFMIRNLVA-RNPENSFCSVMVSRNLSDRQRRTTK  499 (508)
Q Consensus       466 ~~aL~nL~~-~~~e~~~~~~~~g~~~~~~~~~~~~  499 (508)
                      ...+..++. -.|.-.-.++-.|-.+..||.|+-.
T Consensus       751 ~~tfG~Is~aiGPqdvL~~LlnnLkvqeRq~Rvct  785 (975)
T COG5181         751 TETFGCISRAIGPQDVLDILLNNLKVQERQQRVCT  785 (975)
T ss_pred             hhhhhhHHhhcCHHHHHHHHHhcchHHHHHhhhhh
Confidence            877766653 2354445555558888899988754

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=90.31  E-value=23  Score=36.06  Aligned_cols=183  Identities=13%  Similarity=0.158  Sum_probs=94.6

Q ss_pred             CHHHHHHHHHHHHHhhcCChhhHHHHHH---cCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHH
Q 010533          232 DPEILNSGFAVVAASATGNEVVKESYME---LKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRF  308 (508)
Q Consensus       232 ~~~v~~~a~~~L~~l~~~~e~nr~~i~~---~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i  308 (508)
                      ..+.++.++..+..+...+..  ..++.   .-.+..+.+.++.+..+-+..|+.++.-|+..=      | ..+....+
T Consensus        56 ~~~~Re~aL~~l~~~l~~~~~--~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltl------g-~g~~~~ei  126 (309)
T PF05004_consen   56 SSSTREAALEALIRALSSRYL--PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTL------G-AGEDSEEI  126 (309)
T ss_pred             CHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhc------C-CCccHHHH
Confidence            356666777666666543321  12221   124667777777765544444555555444320      0 00112234


Q ss_pred             HhcCCHHHHHHHHhcCCC-hhHHHHHHHHHHHhhc---Ch-hhHhHHhhcCCHHHHHH--HHhccCC------CCcHHHH
Q 010533          309 AKIGIARALVHSLHAGLS-SPSLISASIALKAVAV---ND-EICKSVAENGGIDALLR--CIDDSGL------QGNKTVA  375 (508)
Q Consensus       309 ~~~g~i~~Lv~lL~~~~d-~~~~~~a~~aL~~La~---~~-e~~~~i~e~Ggi~~Lv~--lL~~~~~------~~~~~v~  375 (508)
                      .+ ...|+|..++..++. ..+...++.+|+-++.   .+ +......+  .++.+..  .+.....      .+++.++
T Consensus       127 ~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~  203 (309)
T PF05004_consen  127 FE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALV  203 (309)
T ss_pred             HH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence            43 457888888887653 3343445545544332   21 11111111  1121111  1111111      1124688


Q ss_pred             HHHHHHHHHhhC-CchhH-HHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010533          376 RICCSLLSKLAG-SDSNK-SAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS  429 (508)
Q Consensus       376 ~~al~aL~~La~-~~~~k-~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La  429 (508)
                      ..|+.+-+-|.. -+..+ .... ...+|.|+.+|.  +++..||..|--+|+-|.
T Consensus       204 ~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~--s~d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  204 AAALSAWALLLTTLPDSKLEDLL-EEALPALSELLD--SDDVDVRIAAGEAIALLY  256 (309)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhc--CCCHHHHHHHHHHHHHHH
Confidence            888888877764 34422 2222 356999999999  788999998888877664

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=90.20  E-value=15  Score=41.35  Aligned_cols=221  Identities=17%  Similarity=0.092  Sum_probs=130.8

Q ss_pred             ChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHH--HHH
Q 010533          162 GSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEIL--NSG  239 (508)
Q Consensus       162 ~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~--~~a  239 (508)
                      ...-|...++-|++..|+++..-.   .+.....+-.+|+.-.+-    +-.+....++++..++.   ++.+..  -..
T Consensus       493 ~K~~~~~~Ik~~~~~aLlrl~~~q---~e~akl~~~~aL~~~i~f----~~~~~~~v~~~~~s~~~---~d~~~~en~E~  562 (748)
T KOG4151|consen  493 EKYERAKKIKPGGYEALLRLGQQQ---FEEAKLKWYHALAGKIDF----PGERSYEVVKPLDSALH---NDEKGLENFEA  562 (748)
T ss_pred             hHHhcCccccccHHHHHHHHHHHh---chHHHHHHHHHHhhhcCC----CCCchhhhhhhhcchhh---hhHHHHHHHHH
Confidence            455566788899999999988653   334444455555521110    01111233444444443   222222  467


Q ss_pred             HHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHh-cCCHHHHH
Q 010533          240 FAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK-IGIARALV  318 (508)
Q Consensus       240 ~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~-~g~i~~Lv  318 (508)
                      +.++.|+++.++..|+.|.+.-+++.+-+.+...+...++.+...+.||.....         =+.+.+++ ...++...
T Consensus       563 L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~---------~~e~si~e~~~~l~~w~  633 (748)
T KOG4151|consen  563 LEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPL---------LYERSIVEYKDRLKLWN  633 (748)
T ss_pred             HHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHH---------HHHHHhhccccCchHHH
Confidence            788899999999999998877667765555554444667778888888876432         25566775 35666666


Q ss_pred             HHHhcCCChhHHHHHHHHHHHhhcChhh-HhHHh-hcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CchhHHHH
Q 010533          319 HSLHAGLSSPSLISASIALKAVAVNDEI-CKSVA-ENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAI  395 (508)
Q Consensus       319 ~lL~~~~d~~~~~~a~~aL~~La~~~e~-~~~i~-e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~I  395 (508)
                      ..+.. .+...-...+.++..++...++ |..+. -.-+...++.++.+.    +..+++-.+..+.++.+ ..+....+
T Consensus       634 ~~~e~-~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~----~~~~qhrgl~~~ln~~~~~~ei~~~~  708 (748)
T KOG4151|consen  634 LNLEV-ADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE----DDEIQHRGLVIILNLFEALFEIAEKI  708 (748)
T ss_pred             HHHHh-hhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc----hhhhhhhhhhhhhhHHHHHHHHHHHh
Confidence            66654 2332333445556556665444 44233 345677788877754    23788888888877654 33444445


Q ss_pred             HhCCcHHHHHH
Q 010533          396 IENGGMDKLIV  406 (508)
Q Consensus       396 v~~Ggl~~Lv~  406 (508)
                      .....++.+..
T Consensus       709 ~~~~~~~~l~~  719 (748)
T KOG4151|consen  709 FETEVMELLSG  719 (748)
T ss_pred             ccchHHHHHHH
Confidence            55444444433

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=89.88  E-value=24  Score=35.79  Aligned_cols=227  Identities=13%  Similarity=0.069  Sum_probs=133.6

Q ss_pred             HHHHHHHHHHhCCCCChhhHHHHH-HCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHH---h--cCChH
Q 010533          147 MGLFDKLIELCGGNEGSVNAAVAT-KNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFR---T--GGGPK  220 (508)
Q Consensus       147 ~~al~~L~~lc~~~~~~~~r~~i~-~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~---~--~ggi~  220 (508)
                      .-|.+-+.++.-   .+++|..+- +...--.++.+++..- ++.++|...+-.+..++=.    +.+.   +  -.-+.
T Consensus       167 lfav~cl~~l~~---~~e~R~i~waentcs~r~~e~l~n~v-g~~qlQY~SL~~iw~lTf~----~~~aqdi~K~~dli~  238 (432)
T COG5231         167 LFAVSCLSNLEF---DVEKRKIEWAENTCSRRFMEILQNYV-GVKQLQYNSLIIIWILTFS----KECAQDIDKMDDLIN  238 (432)
T ss_pred             HHHHHHHhhhhh---hHHHHHHHHHHhhHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHhcC----HHHHHHHHHHHHHHH
Confidence            344555555554   677775543 4445567888887653 5667777766555554421    1222   1  23466


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhhcCCh--hhHHHHHHcCcHHHHHHHHhcC--ChHHHHHHHHHHHH--------h
Q 010533          221 LLVNILIDGNEDPEILNSGFAVVAASATGNE--VVKESYMELKIDELILEILSRQ--RNDSIQSLYDAIRV--------L  288 (508)
Q Consensus       221 ~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e--~nr~~i~~~G~i~~Lv~lL~~~--~~~~~~~A~~aL~~--------L  288 (508)
                      .|+.+.+.. ...+|...++..+.+++.+.+  .....+...++.+ -+++|...  +++-+..-..-++.        |
T Consensus       239 dli~iVk~~-~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k-~vq~L~erkysDEel~~di~~i~s~l~~~~k~l  316 (432)
T COG5231         239 DLIAIVKER-AKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISK-CVQVLLERKYSDEELVIDIERIRSRLVQNTKKL  316 (432)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHH-HHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence            677776542 346788899999999987553  2233344434444 45555432  33222222222221        2


Q ss_pred             cCCCcchhhh--------------hhcchHHHHHHhc--CCHHHHHHHHhcCCChhHHHHHHHHHHHhhc-ChhhHhHHh
Q 010533          289 LTPDDDQVVA--------------SQVYGYARRFAKI--GIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVA  351 (508)
Q Consensus       289 ~~~dd~r~~~--------------~~a~~~~~~i~~~--g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~-~~e~~~~i~  351 (508)
                      |.-|....+.              +-=+.|...+.+.  ..+..|.++|+...+...+.-||.-+..+.. .+|....+.
T Consensus       317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~  396 (432)
T COG5231         317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLS  396 (432)
T ss_pred             hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHH
Confidence            2111111110              1123566666643  4688999999875433345567777777665 788888888


Q ss_pred             hcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC
Q 010533          352 ENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG  387 (508)
Q Consensus       352 e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~  387 (508)
                      .-||-..++++|.+. +   .+|.=+|+.++..+-+
T Consensus       397 Kyg~k~~im~L~nh~-d---~~VkfeAl~a~q~~i~  428 (432)
T COG5231         397 KYGVKEIIMNLINHD-D---DDVKFEALQALQTCIS  428 (432)
T ss_pred             HhhhHHHHHHHhcCC-C---chhhHHHHHHHHHHHh
Confidence            999999999999853 3   3899999999887653

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=89.65  E-value=15  Score=35.88  Aligned_cols=151  Identities=14%  Similarity=0.229  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh----HHHH-HHHHHHHHhcCCCcchhhhhhcchHHHHHHh
Q 010533          236 LNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN----DSIQ-SLYDAIRVLLTPDDDQVVASQVYGYARRFAK  310 (508)
Q Consensus       236 ~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~----~~~~-~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~  310 (508)
                      ...++..+..++ .|++.|..|..+..--.|-..|...+.    +.++ .+.+++..|...||.-+        .+.+..
T Consensus        96 VcnaL~LlQcvA-SHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eV--------i~fLl~  166 (293)
T KOG3036|consen   96 VCNALALLQCVA-SHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEV--------IRFLLT  166 (293)
T ss_pred             HHHHHHHHHHHh-cCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHH--------HHHHHH
Confidence            345555555554 578899999999887777777775432    5444 57888999998776433        455668


Q ss_pred             cCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChh----hHhHHhhcCCHHHHHHHH-hccCCCCcHHHHHHHHHHHHHh
Q 010533          311 IGIARALVHSLHAGLSSPSLISASIALKAVAVNDE----ICKSVAENGGIDALLRCI-DDSGLQGNKTVARICCSLLSKL  385 (508)
Q Consensus       311 ~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e----~~~~i~e~Ggi~~Lv~lL-~~~~~~~~~~v~~~al~aL~~L  385 (508)
                      .+.+|..+..+..|+.. .+.-+..-+..+-.+|.    .|+...+=-.|..+++-| ..-.+.++..+.+.++.+.-+|
T Consensus       167 TeIVPlCLrime~GSel-SKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrL  245 (293)
T KOG3036|consen  167 TEIVPLCLRIMESGSEL-SKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRL  245 (293)
T ss_pred             hhhHHHHHHHHhcccHH-HHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            89999999999988632 22222233333333331    233222222222222211 1111234568888888888888


Q ss_pred             hCCchhHHHHH
Q 010533          386 AGSDSNKSAII  396 (508)
Q Consensus       386 a~~~~~k~~Iv  396 (508)
                      +.++..+.++.
T Consensus       246 sdnprar~aL~  256 (293)
T KOG3036|consen  246 SDNPRARAALR  256 (293)
T ss_pred             cCCHHHHHHHH
Confidence            88887777665

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=89.64  E-value=2.3  Score=33.54  Aligned_cols=67  Identities=13%  Similarity=0.163  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC
Q 010533          375 ARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAG  443 (508)
Q Consensus       375 ~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G  443 (508)
                      ++.+++++++++..+..-.-+-+.+.++.++++... ++...++--+..+|.-++ ++.+-++.+-+.|
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~-s~v~siRGT~fy~Lglis-~T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAEN-SPVLSIRGTCFYVLGLIS-STEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHh-CCccchHHHHHHHHHHHh-CCHHHHHHHHHcC
Confidence            578999999999888888878788999999999874 456788888888888888 5777777776665

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=89.55  E-value=1.9  Score=33.93  Aligned_cols=67  Identities=13%  Similarity=0.230  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCC
Q 010533          330 LISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENG  399 (508)
Q Consensus       330 ~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~G  399 (508)
                      ++.+.|++++++..+.-...+.+.+.++.++++...++-   ..++-.|+.+|.-++...+..+.+-+.|
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v---~siRGT~fy~Lglis~T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPV---LSIRGTCFYVLGLISSTEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCc---cchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence            567889999999988777777788899999999886533   3799999999999999988888877765

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=89.52  E-value=28  Score=35.89  Aligned_cols=204  Identities=11%  Similarity=0.078  Sum_probs=131.9

Q ss_pred             HHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCc-chhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHH
Q 010533          256 SYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDD-DQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISAS  334 (508)
Q Consensus       256 ~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd-~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~  334 (508)
                      .+...|.+..|+..|..-+=+..+.++....++....- .+.     ......+.. ..-+.|..++....++++--.+.
T Consensus        71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~-----~p~v~yl~~-~~peil~~L~~gy~~~dial~~g  144 (335)
T PF08569_consen   71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRS-----PPTVDYLER-HRPEILDILLRGYENPDIALNCG  144 (335)
T ss_dssp             HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB-------HHHHHHHT---THHHHHHHHGGGSTTTHHHHH
T ss_pred             HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCC-----CchHHHHHh-CCHHHHHHHHHHhcCccccchHH
Confidence            44556888888888876555778888877777765431 111     012334442 11233333333333455444444


Q ss_pred             HHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHh-hCCchhHHHHHhCC---cHHHHHHHHhc
Q 010533          335 IALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKL-AGSDSNKSAIIENG---GMDKLIVVSAR  410 (508)
Q Consensus       335 ~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~L-a~~~~~k~~Iv~~G---gl~~Lv~lL~~  410 (508)
                      ..|+.....+..++.+.....+..+.+.+..    ++.+|...|+..++.| ..+...........   .....-.+|. 
T Consensus       145 ~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~----~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~-  219 (335)
T PF08569_consen  145 DMLRECIKHESLAKIILYSECFWKFFKYVQL----PNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLE-  219 (335)
T ss_dssp             HHHHHHTTSHHHHHHHHTSGGGGGHHHHTTS----SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-
T ss_pred             HHHHHHHhhHHHHHHHhCcHHHHHHHHHhcC----CccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcc-
Confidence            4556666677778888887777777766653    3679999999999996 56777666666544   3567777887 


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc----CcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhh
Q 010533          411 FSDDASVLQEVMSIITVLSLRSPENAARAMEA----GSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA  474 (508)
Q Consensus       411 ~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~----G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~  474 (508)
                       +++--.+++++-.|..|-+ ++.|...+...    .-+..++.+|+.  .+..+|-+|--...-.++
T Consensus       220 -s~NYvtkrqslkLL~elll-dr~n~~vm~~yi~~~~nLkl~M~lL~d--~sk~Iq~eAFhvFKvFVA  283 (335)
T PF08569_consen  220 -SSNYVTKRQSLKLLGELLL-DRSNFNVMTRYISSPENLKLMMNLLRD--KSKNIQFEAFHVFKVFVA  283 (335)
T ss_dssp             --SSHHHHHHHHHHHHHHHH-SGGGHHHHHHHTT-HHHHHHHHHHTT---S-HHHHHHHHHHHHHHHH
T ss_pred             -CCCeEeehhhHHHHHHHHH-chhHHHHHHHHHCCHHHHHHHHHHhcC--cchhhhHHHHHHHHHHHh
Confidence             7889999999999999986 77777655542    235566666754  457799999888877776

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=89.25  E-value=27  Score=41.35  Aligned_cols=72  Identities=15%  Similarity=0.130  Sum_probs=48.7

Q ss_pred             hhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCch-hHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010533          351 AENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDS-NKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS  429 (508)
Q Consensus       351 ~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~-~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La  429 (508)
                      ++.+-+|.|...|.+..+    -|+..|+++|.-|....- -|.++.+  .+....-+|- | .+..|+..+|+.|+.++
T Consensus       653 ~seyllPLl~Q~ltD~EE----~Viv~aL~~ls~Lik~~ll~K~~v~~--i~~~v~PlL~-h-PN~WIR~~~~~iI~~~~  724 (1431)
T KOG1240|consen  653 VSEYLLPLLQQGLTDGEE----AVIVSALGSLSILIKLGLLRKPAVKD--ILQDVLPLLC-H-PNLWIRRAVLGIIAAIA  724 (1431)
T ss_pred             HHHHHHHHHHHhccCcch----hhHHHHHHHHHHHHHhcccchHHHHH--HHHhhhhhee-C-chHHHHHHHHHHHHHHH
Confidence            355667888888887522    689999999999875432 2333332  3344444454 3 57899999999999887


Q ss_pred             c
Q 010533          430 L  430 (508)
Q Consensus       430 ~  430 (508)
                      .
T Consensus       725 ~  725 (1431)
T KOG1240|consen  725 R  725 (1431)
T ss_pred             h
Confidence            3

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.13  E-value=43  Score=37.60  Aligned_cols=184  Identities=12%  Similarity=0.090  Sum_probs=107.9

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc
Q 010533          263 DELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV  342 (508)
Q Consensus       263 i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~  342 (508)
                      -+-++.+|.+..+-+..-|..+|..+...            |-..+-  -++|.|++-|.+ +|+.++..+..+++.||.
T Consensus       146 a~Dv~tLL~sskpYvRKkAIl~lykvFLk------------YPeAlr--~~FprL~EkLeD-pDp~V~SAAV~VICELAr  210 (877)
T KOG1059|consen  146 ADDVFTLLNSSKPYVRKKAILLLYKVFLK------------YPEALR--PCFPRLVEKLED-PDPSVVSAAVSVICELAR  210 (877)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHh------------hhHhHh--hhHHHHHHhccC-CCchHHHHHHHHHHHHHh
Confidence            34567777776555666677666655421            112222  468889888876 589999999999999998


Q ss_pred             -ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhc----------
Q 010533          343 -NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSAR----------  410 (508)
Q Consensus       343 -~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~----------  410 (508)
                       ++.++-.+.     |.+.++|.++..   ..++-..+.+.++|+- -|....     --+|+|.++|++          
T Consensus       211 KnPknyL~LA-----P~ffkllttSsN---NWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmSLlYEC  277 (877)
T KOG1059|consen  211 KNPQNYLQLA-----PLFYKLLVTSSN---NWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMSLLYEC  277 (877)
T ss_pred             hCCccccccc-----HHHHHHHhccCC---CeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHHHHHHH
Confidence             677776654     788899987543   2677777888888874 232221     245667666652          


Q ss_pred             ------------cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCcc
Q 010533          411 ------------FSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPE  478 (508)
Q Consensus       411 ------------~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e  478 (508)
                                  ++++.....-|+.=|+.++..+..|-+-+    |.-.+-.++++||.  -||..-=..|+.|.-..+.
T Consensus       278 vNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYl----gLlam~KI~ktHp~--~Vqa~kdlIlrcL~DkD~S  351 (877)
T KOG1059|consen  278 VNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYL----GLLAMSKILKTHPK--AVQAHKDLILRCLDDKDES  351 (877)
T ss_pred             HHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHH----HHHHHHHHhhhCHH--HHHHhHHHHHHHhccCCch
Confidence                        11222222233333333433333333332    34455556666653  4555555566666544443


Q ss_pred             ch
Q 010533          479 NS  480 (508)
Q Consensus       479 ~~  480 (508)
                      .|
T Consensus       352 IR  353 (877)
T KOG1059|consen  352 IR  353 (877)
T ss_pred             hH
Confidence            33

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=88.85  E-value=33  Score=37.54  Aligned_cols=198  Identities=14%  Similarity=0.006  Sum_probs=110.6

Q ss_pred             hHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHH-----HHHHHHHhcCCCc
Q 010533          219 PKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQS-----LYDAIRVLLTPDD  293 (508)
Q Consensus       219 i~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~-----A~~aL~~L~~~dd  293 (508)
                      .+.+.++|.  .....-+..+.+.++-+..+.  .-+.+.+.+.+..|-...+.......+.     ...+..+|..   
T Consensus       136 l~~l~~ll~--~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~---  208 (569)
T KOG1242|consen  136 LELLLELLT--STKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGP---  208 (569)
T ss_pred             HHHHHHHhc--cccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCC---
Confidence            345555665  233444445555555443221  2234455667777777766543322221     1111222221   


Q ss_pred             chhhhhhcchHHHHHHhcCCHHHHHHHHhcCCC--hhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHH-HHHhccCCCC
Q 010533          294 DQVVASQVYGYARRFAKIGIARALVHSLHAGLS--SPSLISASIALKAVAVNDEICKSVAENGGIDALL-RCIDDSGLQG  370 (508)
Q Consensus       294 ~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d--~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv-~lL~~~~~~~  370 (508)
                                    ..+-+.++.+-.++.++.|  ..+...+..+...+..       ....+|++.++ .++..-.+. 
T Consensus       209 --------------~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~-------~~~~~aVK~llpsll~~l~~~-  266 (569)
T KOG1242|consen  209 --------------PFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMR-------CLSAYAVKLLLPSLLGSLLEA-  266 (569)
T ss_pred             --------------CCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHH-------hcCcchhhHhhhhhHHHHHHH-
Confidence                          1133456777777776654  4455544444433322       12234544433 222211111 


Q ss_pred             cHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhc--CChhhHHHHHhcCcHHHH
Q 010533          371 NKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL--RSPENAARAMEAGSGDLA  448 (508)
Q Consensus       371 ~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~--~~~~~~~~i~~~G~i~~L  448 (508)
                      .+.-...++.+|+.++.+..-.-...-...+|.+.+.|.  ...+.|++.+..+|..++.  +|++...      .+|.|
T Consensus       267 kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~--DT~~evr~a~~~~l~~~~svidN~dI~~------~ip~L  338 (569)
T KOG1242|consen  267 KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLW--DTKPEVRKAGIETLLKFGSVIDNPDIQK------IIPTL  338 (569)
T ss_pred             hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHc--cCCHHHHHHHHHHHHHHHHhhccHHHHH------HHHHH
Confidence            234556888899988877666666777789999999998  6789999999999999874  4554222      46888


Q ss_pred             HHHHH
Q 010533          449 IQAML  453 (508)
Q Consensus       449 v~~L~  453 (508)
                      ++++.
T Consensus       339 ld~l~  343 (569)
T KOG1242|consen  339 LDALA  343 (569)
T ss_pred             HHHhc
Confidence            88884

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=88.48  E-value=35  Score=35.78  Aligned_cols=218  Identities=15%  Similarity=0.102  Sum_probs=106.8

Q ss_pred             CHHHHHHHHHHHHHhh-cCCcchhHHHhcCChHHHHHHHhcCC---CCHHHHHHHHHHHHHhhcCChhhHHHHH-HcCcH
Q 010533          189 SKRVLDSCLKTMALLV-HDVQSTETFRTGGGPKLLVNILIDGN---EDPEILNSGFAVVAASATGNEVVKESYM-ELKID  263 (508)
Q Consensus       189 ~~~~~~~al~aLa~l~-~~~~~~~~i~~~ggi~~Lv~lL~~~~---~~~~v~~~a~~~L~~l~~~~e~nr~~i~-~~G~i  263 (508)
                      |.++...+++.|+++. +.+.-+..+.+......+++.+....   --..+...-++.|--+..-+...|..++ +.+|+
T Consensus       110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl  189 (532)
T KOG4464|consen  110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL  189 (532)
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence            4566666777777664 22222344555444444444332110   0122333444444444344556777765 88999


Q ss_pred             HHHHHHHhcCCh---------------HHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhc-----
Q 010533          264 ELILEILSRQRN---------------DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHA-----  323 (508)
Q Consensus       264 ~~Lv~lL~~~~~---------------~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~-----  323 (508)
                      +.+...|...-.               ...-++..+++|++.+.+.-+....++. .+.+.  +.+...+..+..     
T Consensus       190 ~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke~~~~~-~r~l~--~llr~cl~~vT~~~~~~  266 (532)
T KOG4464|consen  190 ELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDSDKDVKEEHAIQ-ARHLT--ILLRHCLLIVTLRDSTE  266 (532)
T ss_pred             HHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccccccchhhHHH-HHHHH--HHHHHHHhhccccchHH
Confidence            999999975311               1112344556677765443221111110 11111  122222222221     


Q ss_pred             ----CCC---hhHHHHHHHHHHHhhcChhhHhH-HhhcC--CHHHHHHHHhccC-----CCCcHHHHHHHHHHHHHhhCC
Q 010533          324 ----GLS---SPSLISASIALKAVAVNDEICKS-VAENG--GIDALLRCIDDSG-----LQGNKTVARICCSLLSKLAGS  388 (508)
Q Consensus       324 ----~~d---~~~~~~a~~aL~~La~~~e~~~~-i~e~G--gi~~Lv~lL~~~~-----~~~~~~v~~~al~aL~~La~~  388 (508)
                          +..   +.+....|.++...- ..|+|.. +..-.  -++++..+|....     +....+++...+.+|..+|..
T Consensus       267 elhshav~~L~nv~~k~~~~~~~~~-p~E~~sq~f~~~n~~~mdVi~~lLn~~~~qq~~~ss~~EllsPvlsVL~~car~  345 (532)
T KOG4464|consen  267 ELHSHAVNLLDNVPEKCLDVLAGAK-PHECCSQCFEKRNGRNMDVILRLLNFSEKQQEKESSLHELLSPVLSVLTECARS  345 (532)
T ss_pred             HHhhccCCccCCchhhhhhcccCCC-CcchHHHHHHHhcchhHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHhh
Confidence                110   122233333321111 2233332 22112  2445555554321     112357888999999999998


Q ss_pred             chhHHHHHhCCcHHHHHHHHhc
Q 010533          389 DSNKSAIIENGGMDKLIVVSAR  410 (508)
Q Consensus       389 ~~~k~~Iv~~Ggl~~Lv~lL~~  410 (508)
                      +.+.+...+...+|+|.++=++
T Consensus       346 ~R~~Rkylr~qVLPPLrDV~~R  367 (532)
T KOG4464|consen  346 HRVMRKYLRQQVLPPLRDVSQR  367 (532)
T ss_pred             hHHHHHHHHHhcCCchhhhhcC
Confidence            8888888888899999877664

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=88.39  E-value=2.2  Score=42.13  Aligned_cols=167  Identities=11%  Similarity=0.076  Sum_probs=94.4

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcC--CHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchh
Q 010533          314 ARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENG--GIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSN  391 (508)
Q Consensus       314 i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~G--gi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~  391 (508)
                      +..+..++.+.+. +-+..+...++-++.++.....+...+  ....+..++....+......+--++++|.|+..++..
T Consensus        65 ~~~~~~~~~~Wp~-~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~  143 (268)
T PF08324_consen   65 LILLLKILLSWPP-ESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPG  143 (268)
T ss_dssp             HHHHHHHHCCS-C-CC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHHhCCC-ccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCcc
Confidence            3444455544432 223444444444444554444443332  2456666666544334457778899999999999888


Q ss_pred             HHHHHhCCcHHHHHHHHhccCC-----CHHHHHHHHHHHHHHhcCChhhH-HHHHhcCcHHHHHHHHHcCCCcHHHHHHH
Q 010533          392 KSAIIENGGMDKLIVVSARFSD-----DASVLQEVMSIITVLSLRSPENA-ARAMEAGSGDLAIQAMLKFPNAQQLQRSS  465 (508)
Q Consensus       392 k~~Iv~~Ggl~~Lv~lL~~~~~-----~~~v~e~a~~aL~~La~~~~~~~-~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A  465 (508)
                      +..+.+... ..+++.+.....     +..++-.++..+.|++....... ..=.....+..+++.+.....++++.-.+
T Consensus       144 ~~~~~~~~~-~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~  222 (268)
T PF08324_consen  144 RQLLLSHFD-SSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRL  222 (268)
T ss_dssp             HHHHHCTHH-TCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHH
T ss_pred             HHHHHhccc-chHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHH
Confidence            888875443 244444433222     57788888888889875211111 00000112455555444454678888889


Q ss_pred             HHHHHHhhhcCccchHH
Q 010533          466 CFMIRNLVARNPENSFC  482 (508)
Q Consensus       466 ~~aL~nL~~~~~e~~~~  482 (508)
                      ..||.+++...++....
T Consensus       223 LvAlGtL~~~~~~~~~~  239 (268)
T PF08324_consen  223 LVALGTLLSSSDSAKQL  239 (268)
T ss_dssp             HHHHHHHHCCSHHHHHH
T ss_pred             HHHHHHHhccChhHHHH
Confidence            99999999755544433

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=88.14  E-value=58  Score=37.82  Aligned_cols=186  Identities=10%  Similarity=0.073  Sum_probs=93.0

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCC-hhHH-HHHHHHHHHhhc
Q 010533          265 LILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLS-SPSL-ISASIALKAVAV  342 (508)
Q Consensus       265 ~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d-~~~~-~~a~~aL~~La~  342 (508)
                      .+++.+++++.++..+|.-||.+++.+.-+                 ..+|-+++.+.+.+. ..++ -..-..|.....
T Consensus       861 ~iieaf~sp~edvksAAs~ALGsl~vgnl~-----------------~yLpfil~qi~sqpk~QyLLLhSlkevi~~~sv  923 (1233)
T KOG1824|consen  861 TIIEAFNSPSEDVKSAASYALGSLAVGNLP-----------------KYLPFILEQIESQPKRQYLLLHSLKEVIVSASV  923 (1233)
T ss_pred             HHHHHcCCChHHHHHHHHHHhhhhhcCchH-----------------hHHHHHHHHHhcchHhHHHHHHHHHHHHHHhcc
Confidence            455666666666666666777776654311                 235666665554321 1111 111111222221


Q ss_pred             ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHH
Q 010533          343 NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVM  422 (508)
Q Consensus       343 ~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~  422 (508)
                      + ..      ...++.++.+|-.+.+......+.-...+|+.|+..+.-       .-+|.|-..+.  ++.+..+--++
T Consensus       924 d-~~------~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epe-------sLlpkL~~~~~--S~a~~~rs~vv  987 (1233)
T KOG1824|consen  924 D-GL------KPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPE-------SLLPKLKLLLR--SEASNTRSSVV  987 (1233)
T ss_pred             c-hh------hhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChH-------HHHHHHHHHhc--CCCcchhhhhh
Confidence            1 00      112344555554443322112333334445555432211       23567777776  66677777777


Q ss_pred             HHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHhc
Q 010533          423 SIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMV  486 (508)
Q Consensus       423 ~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~  486 (508)
                      .++.-.-...|.-...+... .+.-.+.+++.  .+..|++.|..++...+.+-|...+-++.+
T Consensus       988 savKfsisd~p~~id~~lk~-~ig~fl~~~~d--pDl~VrrvaLvv~nSaahNKpslIrDllpe 1048 (1233)
T KOG1824|consen  988 SAVKFSISDQPQPIDPLLKQ-QIGDFLKLLRD--PDLEVRRVALVVLNSAAHNKPSLIRDLLPE 1048 (1233)
T ss_pred             heeeeeecCCCCccCHHHHH-HHHHHHHHHhC--CchhHHHHHHHHHHHHHccCHhHHHHHHHH
Confidence            76665444555555544433 34444566654  357888888888866555556665555543

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.83  E-value=55  Score=37.20  Aligned_cols=87  Identities=10%  Similarity=0.117  Sum_probs=50.9

Q ss_pred             CCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcC--CCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHH
Q 010533          188 GSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDG--NEDPEILNSGFAVVAASATGNEVVKESYMELKIDEL  265 (508)
Q Consensus       188 ~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~--~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~  265 (508)
                      +++-++++|+.+|+++--      .+    ..|.++-..+.-  ...+-|...|+.+|-.+=+-..+.+..+.+     .
T Consensus       120 pN~LiRasALRvlSsIRv------p~----IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e-----~  184 (968)
T KOG1060|consen  120 PNQLIRASALRVLSSIRV------PM----IAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEE-----V  184 (968)
T ss_pred             CcHHHHHHHHHHHHhcch------hh----HHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHH-----H
Confidence            456677777777766421      00    112222222211  235678888888887775555666665543     4


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHhc
Q 010533          266 ILEILSRQRNDSIQSLYDAIRVLL  289 (508)
Q Consensus       266 Lv~lL~~~~~~~~~~A~~aL~~L~  289 (508)
                      +-.+|...++-++..|..|.-.+|
T Consensus       185 I~~LLaD~splVvgsAv~AF~evC  208 (968)
T KOG1060|consen  185 IKKLLADRSPLVVGSAVMAFEEVC  208 (968)
T ss_pred             HHHHhcCCCCcchhHHHHHHHHhc
Confidence            555666666677788887777776

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=86.58  E-value=10  Score=36.45  Aligned_cols=125  Identities=15%  Similarity=0.119  Sum_probs=78.7

Q ss_pred             HHHHHHHHhCCCCChhhHHHHHHCCcHHHH-HH-------HHhccc--CCCHHHHHHHHHHHHHhhcCCcchhHHHhcCC
Q 010533          149 LFDKLIELCGGNEGSVNAAVATKNGGVELV-CS-------ICYKMR--CGSKRVLDSCLKTMALLVHDVQSTETFRTGGG  218 (508)
Q Consensus       149 al~~L~~lc~~~~~~~~r~~i~~~Gavp~L-v~-------lL~~~~--~~~~~~~~~al~aLa~l~~~~~~~~~i~~~gg  218 (508)
                      ++.+|.+.-++  ++.-...+-...+++.. ++       +|+...  .....-.++++..|-.++...+.+..|+++..
T Consensus        65 aL~EL~rkreq--~~dlAl~lW~s~gvmt~LLqEiisvYpiL~p~~l~~~~snRvcnaL~lLQclaShPetk~~Fl~Ahi  142 (315)
T COG5209          65 ALDELFRKREQ--SPDLALELWRSDGVMTFLLQEIISVYPILSPSKLDERESNRVCNALNLLQCLASHPETKKVFLDAHI  142 (315)
T ss_pred             HHHHHHHHHhc--CCCeeeeehhccchHHHHHHHHHhhhhccCccccCchhhhHHHHHHHHHHHHhcCcchheeeeeccc
Confidence            78887776655  55554455555666542 21       222211  12234578888888888888777788888887


Q ss_pred             hHHHHHHHhc---CCCCHHHHHHHHHHHHHhhcCCh-hhHHHHHHcCcHHHHHHHHhcCCh
Q 010533          219 PKLLVNILID---GNEDPEILNSGFAVVAASATGNE-VVKESYMELKIDELILEILSRQRN  275 (508)
Q Consensus       219 i~~Lv~lL~~---~~~~~~v~~~a~~~L~~l~~~~e-~nr~~i~~~G~i~~Lv~lL~~~~~  275 (508)
                      .-.+-.+|..   ++.-.-+.-.++.+++.+...+. ..-..+....++|++++++..+++
T Consensus       143 plflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSE  203 (315)
T COG5209         143 PLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSE  203 (315)
T ss_pred             ceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhH
Confidence            6555555543   33344566677788888754333 233444566899999999988764

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=86.22  E-value=5  Score=36.49  Aligned_cols=147  Identities=14%  Similarity=0.130  Sum_probs=84.0

Q ss_pred             HHHHHHHHhc-CCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCchh
Q 010533          314 ARALVHSLHA-GLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSN  391 (508)
Q Consensus       314 i~~Lv~lL~~-~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~  391 (508)
                      ++.++.-|.. ...+++...+..++..+-  +.......+ -.-+.+-..+.... .   +-...++.+|..|- +.++.
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~~~~-~---d~~i~~~~~l~~lfp~~~dv   77 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE-KISDFIESLLDEGE-M---DSLIIAFSALTALFPGPPDV   77 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHCCHH-C---CHHHHHHHHHHHHCTTTHHH
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHcccc-c---hhHHHHHHHHHHHhCCCHHH
Confidence            3344444443 223456666666665553  222221111 01133444454332 2   24456777777774 56676


Q ss_pred             HHHHH-hCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHH-HHHHHHHHH
Q 010533          392 KSAII-ENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQ-LQRSSCFMI  469 (508)
Q Consensus       392 k~~Iv-~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~-vq~~A~~aL  469 (508)
                      ...+. ..|.++.++.++.+++.+..++..++-+|..=|. +...+..|. ..+++.|-+..+.. .+.. ++--|+..|
T Consensus        78 ~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~~~r~~I~-~~~~~~L~~~~~~~-~~~~~ir~~A~v~L  154 (157)
T PF11701_consen   78 GSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DKSCRTFIS-KNYVSWLKELYKNS-KDDSEIRVLAAVGL  154 (157)
T ss_dssp             HHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SHHHHHCCH-HHCHHHHHHHTTTC-C-HH-CHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cHHHHHHHH-HHHHHHHHHHHccc-cchHHHHHHHHHHH
Confidence            66665 6677899999998777888898888888888774 555555555 55778888887544 3344 555565555


Q ss_pred             H
Q 010533          470 R  470 (508)
Q Consensus       470 ~  470 (508)
                      .
T Consensus       155 ~  155 (157)
T PF11701_consen  155 C  155 (157)
T ss_dssp             H
T ss_pred             h
Confidence            4

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=85.86  E-value=54  Score=35.18  Aligned_cols=123  Identities=11%  Similarity=0.102  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHHhhcCCh---hhHHHHHHcCcHHHHHHHHhcCCh------HHHHH-HHHHHHHhcCCCcchhhhhhcc
Q 010533          233 PEILNSGFAVVAASATGNE---VVKESYMELKIDELILEILSRQRN------DSIQS-LYDAIRVLLTPDDDQVVASQVY  302 (508)
Q Consensus       233 ~~v~~~a~~~L~~l~~~~e---~nr~~i~~~G~i~~Lv~lL~~~~~------~~~~~-A~~aL~~L~~~dd~r~~~~~a~  302 (508)
                      .+-+-.++-.+...+...+   .||+.+.++=|.+-+-++|++++.      .+.+. +...|...|.+.+..     +|
T Consensus        25 D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElA-----sh   99 (698)
T KOG2611|consen   25 DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELA-----SH   99 (698)
T ss_pred             hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhc-----cC
Confidence            3445556666666654333   467788888888889899987431      44444 566677777665431     12


Q ss_pred             hHHHHHHhcCCHHHHHHHHhcCCChh------HHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhc
Q 010533          303 GYARRFAKIGIARALVHSLHAGLSSP------SLISASIALKAVAVNDEICKSVAENGGIDALLRCIDD  365 (508)
Q Consensus       303 ~~~~~i~~~g~i~~Lv~lL~~~~d~~------~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~  365 (508)
                         +.++  +.||.|.+.+..+.|++      .+.++-.+|..++..+.--+.++..||++.+-++-.-
T Consensus       100 ---~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~  163 (698)
T KOG2611|consen  100 ---EEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYEL  163 (698)
T ss_pred             ---HHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhC
Confidence               2344  46999999999876554      7788889999999988778889999999999876543

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.31  E-value=12  Score=42.28  Aligned_cols=170  Identities=14%  Similarity=0.156  Sum_probs=96.4

Q ss_pred             cCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHh
Q 010533          272 RQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVA  351 (508)
Q Consensus       272 ~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~  351 (508)
                      +.+..++.++|.++..|+--.+           .     .+.+++|+.+|+++.  +++.-+...+..++...   +.+.
T Consensus       298 S~n~sVVmA~aql~y~lAP~~~-----------~-----~~i~kaLvrLLrs~~--~vqyvvL~nIa~~s~~~---~~lF  356 (968)
T KOG1060|consen  298 SRNPSVVMAVAQLFYHLAPKNQ-----------V-----TKIAKALVRLLRSNR--EVQYVVLQNIATISIKR---PTLF  356 (968)
T ss_pred             cCCcHHHHHHHhHHHhhCCHHH-----------H-----HHHHHHHHHHHhcCC--cchhhhHHHHHHHHhcc---hhhh
Confidence            3344778888888888873211           1     134789999998754  34444444444454321   1111


Q ss_pred             hcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhcc--CCCHHHHHHHHHHHHHHh
Q 010533          352 ENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARF--SDDASVLQEVMSIITVLS  429 (508)
Q Consensus       352 e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~--~~~~~v~e~a~~aL~~La  429 (508)
                          -|.+-++.-...|.  ..+..-=+..|.+|+.          ++-+..+++=++.|  +.+..+...++.+|...+
T Consensus       357 ----~P~lKsFfv~ssDp--~~vk~lKleiLs~La~----------esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA  420 (968)
T KOG1060|consen  357 ----EPHLKSFFVRSSDP--TQVKILKLEILSNLAN----------ESNISEILRELQTYIKSSDRSFAAAAVKAIGRCA  420 (968)
T ss_pred             ----hhhhhceEeecCCH--HHHHHHHHHHHHHHhh----------hccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence                12333333222221  1233333566777663          23333333333322  344457777788888777


Q ss_pred             cCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHh
Q 010533          430 LRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVM  485 (508)
Q Consensus       430 ~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~  485 (508)
                      .+.-....     -.+..|+.+|+.|  ++.|..++...|+-|..++|...-.++.
T Consensus       421 ~~~~sv~~-----tCL~gLv~Llssh--de~Vv~eaV~vIk~Llq~~p~~h~~ii~  469 (968)
T KOG1060|consen  421 SRIGSVTD-----TCLNGLVQLLSSH--DELVVAEAVVVIKRLLQKDPAEHLEILF  469 (968)
T ss_pred             HhhCchhh-----HHHHHHHHHHhcc--cchhHHHHHHHHHHHHhhChHHHHHHHH
Confidence            65443333     2456788999887  5788889999999999888766644443

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=85.25  E-value=41  Score=33.28  Aligned_cols=77  Identities=12%  Similarity=0.131  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHH
Q 010533          329 SLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVS  408 (508)
Q Consensus       329 ~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL  408 (508)
                      .+-.++.+++.|-..          -.|+.|.+.|.+..+++  .|..+|+.+|+.+++.          .+++.|.+.+
T Consensus       203 frhEvAfVfGQl~s~----------~ai~~L~k~L~d~~E~p--MVRhEaAeALGaIa~e----------~~~~vL~e~~  260 (289)
T KOG0567|consen  203 FRHEVAFVFGQLQSP----------AAIPSLIKVLLDETEHP--MVRHEAAEALGAIADE----------DCVEVLKEYL  260 (289)
T ss_pred             HHHHHHHHHhhccch----------hhhHHHHHHHHhhhcch--HHHHHHHHHHHhhcCH----------HHHHHHHHHc
Confidence            345677777766543          25788999998876654  8999999999998743          3556666666


Q ss_pred             hccCCCHHHHHHHHHHHHHHh
Q 010533          409 ARFSDDASVLQEVMSIITVLS  429 (508)
Q Consensus       409 ~~~~~~~~v~e~a~~aL~~La  429 (508)
                      .  ..++-|++.+..+|-.+-
T Consensus       261 ~--D~~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  261 G--DEERVVRESCEVALDMLE  279 (289)
T ss_pred             C--CcHHHHHHHHHHHHHHHH
Confidence            5  334456666655655443

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=85.14  E-value=19  Score=39.87  Aligned_cols=141  Identities=12%  Similarity=0.133  Sum_probs=75.7

Q ss_pred             CHHHHHHHHhcCC---ChhHHHHHHHHHHHhh----cChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHh
Q 010533          313 IARALVHSLHAGL---SSPSLISASIALKAVA----VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKL  385 (508)
Q Consensus       313 ~i~~Lv~lL~~~~---d~~~~~~a~~aL~~La----~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~L  385 (508)
                      .+..+..++++..   .+.+...+..++++|.    .+.+.|...+-..-++.+.+.|.......+.+-....+.+|+|+
T Consensus       394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~  473 (574)
T smart00638      394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA  473 (574)
T ss_pred             HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence            3566667666432   2334444555555554    33333321111123455665555421112224445566667665


Q ss_pred             hCCchhHHHHHhCCcHHHHHHHHh-ccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHH
Q 010533          386 AGSDSNKSAIIENGGMDKLIVVSA-RFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRS  464 (508)
Q Consensus       386 a~~~~~k~~Iv~~Ggl~~Lv~lL~-~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~  464 (508)
                      ...          ..++.|...+. ....+..++..|+++|..++...|+..+        +.++.+......+.+++-.
T Consensus       474 g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~--------~~l~~i~~n~~e~~EvRia  535 (574)
T smart00638      474 GHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ--------EVLLPIYLNRAEPPEVRMA  535 (574)
T ss_pred             CCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH--------HHHHHHHcCCCCChHHHHH
Confidence            321          12344444443 3334578999999999999866665433        4456666666667777777


Q ss_pred             HHHHHHH
Q 010533          465 SCFMIRN  471 (508)
Q Consensus       465 A~~aL~n  471 (508)
                      |+.+|-.
T Consensus       536 A~~~lm~  542 (574)
T smart00638      536 AVLVLME  542 (574)
T ss_pred             HHHHHHh
Confidence            7766654

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=84.76  E-value=48  Score=37.80  Aligned_cols=52  Identities=21%  Similarity=0.233  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 010533          373 TVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVL  428 (508)
Q Consensus       373 ~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~L  428 (508)
                      .|.+.|.-++.+|-.-  .+..+.+.|.+..+..++.  ..+|.|..+|..+|..+
T Consensus       142 yVRk~Aalav~kly~l--d~~l~~~~g~~~~l~~l~~--D~dP~Vi~nAl~sl~~i  193 (757)
T COG5096         142 YVRKTAALAVAKLYRL--DKDLYHELGLIDILKELVA--DSDPIVIANALASLAEI  193 (757)
T ss_pred             HHHHHHHHHHHHHHhc--CHhhhhcccHHHHHHHHhh--CCCchHHHHHHHHHHHh
Confidence            4444444444444211  1222333344444444443  34444444444444444

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=84.72  E-value=67  Score=35.28  Aligned_cols=270  Identities=13%  Similarity=0.049  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHH
Q 010533          120 LIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKT  199 (508)
Q Consensus       120 v~~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~a  199 (508)
                      +..++..|+.+|.+.       .......|++.|.+++..  .|+-. -.    +-|-+=+|..+   .+..+...|+++
T Consensus       301 ~~~~vs~L~~fL~s~-------rv~~rFsA~Riln~lam~--~P~kv-~v----cN~evEsLIsd---~Nr~IstyAITt  363 (898)
T COG5240         301 VDQTVSSLRTFLKST-------RVVLRFSAMRILNQLAMK--YPQKV-SV----CNKEVESLISD---ENRTISTYAITT  363 (898)
T ss_pred             HHHHHHHHHHHHhcc-------hHHHHHHHHHHHHHHHhh--CCcee-ee----cChhHHHHhhc---ccccchHHHHHH
Confidence            445677777777765       566667778888777765  44311 00    11122222222   233444444444


Q ss_pred             HHHhhcCCcchhHHHhcCChHHHHHHHhcCC--CCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-H
Q 010533          200 MALLVHDVQSTETFRTGGGPKLLVNILIDGN--EDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-D  276 (508)
Q Consensus       200 La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~--~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-~  276 (508)
                      |.-  .|.+        ..|..|+.++-..-  -+......++.+++.+|..-+.-+..+     +.-|...|...+. +
T Consensus       364 LLK--TGt~--------e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~-----l~FL~~~L~~eGg~e  428 (898)
T COG5240         364 LLK--TGTE--------ETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSY-----LDFLGSSLLQEGGLE  428 (898)
T ss_pred             HHH--cCch--------hhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHH-----HHHHHHHHHhcccch
Confidence            332  1211        12333333322110  011112233444555555555444433     3445555554333 5


Q ss_pred             HHHHHHHHHHHhcCCC-cchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCC
Q 010533          277 SIQSLYDAIRVLLTPD-DDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGG  355 (508)
Q Consensus       277 ~~~~A~~aL~~L~~~d-d~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Gg  355 (508)
                      ..+.+..+|.-+...+ +.               +..+++.|+..+.++.-+.+.......|+.=.-...+-...     
T Consensus       429 FK~~~Vdaisd~~~~~p~s---------------kEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~y-----  488 (898)
T COG5240         429 FKKYMVDAISDAMENDPDS---------------KERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKY-----  488 (898)
T ss_pred             HHHHHHHHHHHHHhhCchH---------------HHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchH-----
Confidence            5555666665444322 21               11345666666666544445455544443221111111111     


Q ss_pred             HHHHH-HHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChh
Q 010533          356 IDALL-RCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPE  434 (508)
Q Consensus       356 i~~Lv-~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~  434 (508)
                      |..+. +++-.     |.-|...|+.+|...+.+-+.+  +.-......|-++++  ..+.+|++.|.-.|.+|-.  .+
T Consensus       489 vrhIyNR~iLE-----N~ivRsaAv~aLskf~ln~~d~--~~~~sv~~~lkRcln--D~DdeVRdrAsf~l~~~~~--~d  557 (898)
T COG5240         489 VRHIYNRLILE-----NNIVRSAAVQALSKFALNISDV--VSPQSVENALKRCLN--DQDDEVRDRASFLLRNMRL--SD  557 (898)
T ss_pred             HHHHHHHHHHh-----hhHHHHHHHHHHHHhccCcccc--ccHHHHHHHHHHHhh--cccHHHHHHHHHHHHhhhh--hh
Confidence            11122 22211     2367888999998887542211  111112235556666  5578999999999999863  33


Q ss_pred             hHHHHHhc---CcHHHHHHHH
Q 010533          435 NAARAMEA---GSGDLAIQAM  452 (508)
Q Consensus       435 ~~~~i~~~---G~i~~Lv~~L  452 (508)
                      .+..+++.   |-+|.+..-+
T Consensus       558 a~~pl~~sd~~~dipsle~~l  578 (898)
T COG5240         558 ACEPLFSSDELGDIPSLELEL  578 (898)
T ss_pred             hhhccccccccCCcchhHHhh
Confidence            34444433   4455555444

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=84.71  E-value=2  Score=27.48  Aligned_cols=28  Identities=11%  Similarity=0.131  Sum_probs=24.4

Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010533          401 MDKLIVVSARFSDDASVLQEVMSIITVLSL  430 (508)
Q Consensus       401 l~~Lv~lL~~~~~~~~v~e~a~~aL~~La~  430 (508)
                      +|.++++++  .+++.|+..|+.+|..|+.
T Consensus         2 lp~l~~~l~--D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLN--DPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT---SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcC--CCCHHHHHHHHHHHHHHHh
Confidence            688999998  7789999999999999874

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=84.47  E-value=4.1  Score=46.21  Aligned_cols=193  Identities=11%  Similarity=0.081  Sum_probs=118.3

Q ss_pred             HhhcCChhhHHHHHHcCcHHHHHHHHhcCCh------HHHHHHHHHHHHhcCCCcchhhh-hhcchHHHHHHhcCCHHHH
Q 010533          245 ASATGNEVVKESYMELKIDELILEILSRQRN------DSIQSLYDAIRVLLTPDDDQVVA-SQVYGYARRFAKIGIARAL  317 (508)
Q Consensus       245 ~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~------~~~~~A~~aL~~L~~~dd~r~~~-~~a~~~~~~i~~~g~i~~L  317 (508)
                      ++..+-|..|+.-+..|+.+..+.-++.+..      +.....||-+-.+..--   ..| +...+-+..+.+.+++..+
T Consensus       530 Hl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~g---p~f~~~~w~~aenflkls~v~~~  606 (1516)
T KOG1832|consen  530 HLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLG---PTFVKAQWPAAENFLKLSGVVTM  606 (1516)
T ss_pred             HHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhC---hhhhhhcchHHHHHHHhHHHHHH
Confidence            3445566667777777777777775554321      45555666555443211   112 2233455667778999999


Q ss_pred             HHHHhcCCC-------hhHHHHHHHHHHHhhcChhhHhHHhh-------c-CCHHHHHHHHhccCCCCcHHHHHHHHHHH
Q 010533          318 VHSLHAGLS-------SPSLISASIALKAVAVNDEICKSVAE-------N-GGIDALLRCIDDSGLQGNKTVARICCSLL  382 (508)
Q Consensus       318 v~lL~~~~d-------~~~~~~a~~aL~~La~~~e~~~~i~e-------~-Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL  382 (508)
                      +++.....+       .+.+..+..+|.-+..-++....++.       + .|+..|+..-.-.....+++++..|+.+|
T Consensus       607 L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vI  686 (1516)
T KOG1832|consen  607 LELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVI  686 (1516)
T ss_pred             HHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhh
Confidence            998775432       14455566666555555555544442       2 26666665543333334689999999999


Q ss_pred             HHhhC-CchhH-----------------------------------HHHHhCCcHHHHHHHHhccC---CCHHHHHHHHH
Q 010533          383 SKLAG-SDSNK-----------------------------------SAIIENGGMDKLIVVSARFS---DDASVLQEVMS  423 (508)
Q Consensus       383 ~~La~-~~~~k-----------------------------------~~Iv~~Ggl~~Lv~lL~~~~---~~~~v~e~a~~  423 (508)
                      -|+.. .|+++                                   .++....||..|+.+|+-..   .-..++.-||.
T Consensus       687 incVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~  766 (1516)
T KOG1832|consen  687 INCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACR  766 (1516)
T ss_pred             heeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHH
Confidence            99853 33432                                   23444578999999997211   12468999999


Q ss_pred             HHHHHhcCChhhHHHHHh
Q 010533          424 IITVLSLRSPENAARAME  441 (508)
Q Consensus       424 aL~~La~~~~~~~~~i~~  441 (508)
                      +|.-|+ |++..++-+..
T Consensus       767 ~L~GLa-R~~tVrQIltK  783 (1516)
T KOG1832|consen  767 VLLGLA-RDDTVRQILTK  783 (1516)
T ss_pred             HHhccc-cCcHHHHHHHh
Confidence            999999 78887776544

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.79  E-value=26  Score=39.42  Aligned_cols=94  Identities=16%  Similarity=0.130  Sum_probs=60.3

Q ss_pred             CCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHH
Q 010533          188 GSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELIL  267 (508)
Q Consensus       188 ~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv  267 (508)
                      .++.++..|+.++..+-.+.      +..-...++.+.|+  .+++.++..+.-++..+   +.-+.+.....|.++.|.
T Consensus        98 ~np~iR~lAlrtm~~l~v~~------i~ey~~~Pl~~~l~--d~~~yvRktaa~~vakl---~~~~~~~~~~~gl~~~L~  166 (734)
T KOG1061|consen   98 PNPLIRALALRTMGCLRVDK------ITEYLCDPLLKCLK--DDDPYVRKTAAVCVAKL---FDIDPDLVEDSGLVDALK  166 (734)
T ss_pred             CCHHHHHHHhhceeeEeehH------HHHHHHHHHHHhcc--CCChhHHHHHHHHHHHh---hcCChhhccccchhHHHH
Confidence            45666666666665543221      11223455666665  34667776666666554   344567777889999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHhcCCC
Q 010533          268 EILSRQRNDSIQSLYDAIRVLLTPD  292 (508)
Q Consensus       268 ~lL~~~~~~~~~~A~~aL~~L~~~d  292 (508)
                      .++...+..++.+|.++|..+...+
T Consensus       167 ~ll~D~~p~VVAnAlaaL~eI~e~~  191 (734)
T KOG1061|consen  167 DLLSDSNPMVVANALAALSEIHESH  191 (734)
T ss_pred             HHhcCCCchHHHHHHHHHHHHHHhC
Confidence            9998655688899988888876443

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.36  E-value=55  Score=35.79  Aligned_cols=196  Identities=13%  Similarity=0.155  Sum_probs=110.3

Q ss_pred             CcHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHH---HHHHH
Q 010533          261 KIDELILEILSRQRNDSIQSLYDAIRVLL-TPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLI---SASIA  336 (508)
Q Consensus       261 G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~-~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~---~a~~a  336 (508)
                      ..++.++.-+.++....+..|.--|.... ...+.           -...-+|++..++.++.+........   ..-..
T Consensus       250 ~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-----------~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~  318 (675)
T KOG0212|consen  250 DMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-----------LLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGL  318 (675)
T ss_pred             cchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-----------hhhhhhhhhhhcccCCCCCccccHHHHHHHHHHH
Confidence            47788888888776666655533333322 11110           01113355666666555432211211   11122


Q ss_pred             HHHhhcChhhHhHHhhcC-CHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCH
Q 010533          337 LKAVAVNDEICKSVAENG-GIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDA  415 (508)
Q Consensus       337 L~~La~~~e~~~~i~e~G-gi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~  415 (508)
                      |..+...+...+. ++-| .++.+.+.+.+..    .+..-.++.-+..|-..-.++-..-.....+.|+..|.  ..+.
T Consensus       319 l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~----~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLs--d~sd  391 (675)
T KOG0212|consen  319 LLKLVSSERLKEE-IDYGSIIEVLTKYLSDDR----EETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLS--DRSD  391 (675)
T ss_pred             HHHHHhhhhhccc-cchHHHHHHHHHHhhcch----HHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhc--Cchh
Confidence            3334433333333 3333 2455666665432    25566777777766544444444444455678888887  4567


Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHH-HHHHHHHHHHHhhhc-CccchH
Q 010533          416 SVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQ-LQRSSCFMIRNLVAR-NPENSF  481 (508)
Q Consensus       416 ~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~-vq~~A~~aL~nL~~~-~~e~~~  481 (508)
                      .|...++..|+++|. +++..      |..+.+..+|..+..+.. +...|...||-|+.. ++|..-
T Consensus       392 ~vvl~~L~lla~i~~-s~~~~------~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IY  452 (675)
T KOG0212|consen  392 EVVLLALSLLASICS-SSNSP------NLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIY  452 (675)
T ss_pred             HHHHHHHHHHHHHhc-Ccccc------cHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHH
Confidence            899999999999996 43322      557777777776665555 455688899998864 666653

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.25  E-value=12  Score=43.51  Aligned_cols=197  Identities=22%  Similarity=0.250  Sum_probs=119.4

Q ss_pred             HHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHH
Q 010533          240 FAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVH  319 (508)
Q Consensus       240 ~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~  319 (508)
                      ..+|..+..++++|.+.|.++.|+..++..+-+.  +-.......+..|...|-.++             .+..+-.|++
T Consensus       663 wDcLisllKnnteNqklFreanGvklilpflind--ehRSslLrivscLitvdpkqv-------------hhqelmalVd  727 (2799)
T KOG1788|consen  663 WDCLISLLKNNTENQKLFREANGVKLILPFLIND--EHRSSLLRIVSCLITVDPKQV-------------HHQELMALVD  727 (2799)
T ss_pred             HHHHHHHHhccchhhHHHHhhcCceEEEEeeech--HHHHHHHHHHHHHhccCcccc-------------cHHHHHHHHH
Confidence            4556666677888999999998888888887442  222223344555554442222             1123556777


Q ss_pred             HHhcCCC-----------hhHHHHHHHHHHHhhcCh-hhHhHHhhcCCHHHHHHHHhcc------CCCCcHH--------
Q 010533          320 SLHAGLS-----------SPSLISASIALKAVAVND-EICKSVAENGGIDALLRCIDDS------GLQGNKT--------  373 (508)
Q Consensus       320 lL~~~~d-----------~~~~~~a~~aL~~La~~~-e~~~~i~e~Ggi~~Lv~lL~~~------~~~~~~~--------  373 (508)
                      .|+++--           -+++.+..+++|.+-.-+ .....+.++||...|+..|-..      .+.++.-        
T Consensus       728 tLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfki  807 (2799)
T KOG1788|consen  728 TLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKI  807 (2799)
T ss_pred             HHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHH
Confidence            7776421           145677778888877644 3445667888887776554311      1111000        


Q ss_pred             -------------------------------------------------HHH---------------HHHHHHHHh----
Q 010533          374 -------------------------------------------------VAR---------------ICCSLLSKL----  385 (508)
Q Consensus       374 -------------------------------------------------v~~---------------~al~aL~~L----  385 (508)
                                                                       +.+               .||.-+-.+    
T Consensus       808 lFrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfeledni  887 (2799)
T KOG1788|consen  808 LFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNI  887 (2799)
T ss_pred             HHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccce
Confidence                                                             000               011111100    


Q ss_pred             -h-----C-CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHH
Q 010533          386 -A-----G-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAML  453 (508)
Q Consensus       386 -a-----~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~  453 (508)
                       +     | ....++.|-.+|++..|++.+-  -..+..|-.-+..|..++.-+|.|+......|.++.+++++.
T Consensus       888 favntPsGqfnpdk~~iynagavRvlirslL--lnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiy  960 (2799)
T KOG1788|consen  888 FAVNTPSGQFNPDKQKIYNAGAVRVLIRSLL--LNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIY  960 (2799)
T ss_pred             eeeccCCCCcCchHhhhcccchhHHHHHHHH--hhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhh
Confidence             0     1 0123566777888888888655  345788888888899999889999999888999999988763

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.18  E-value=63  Score=36.45  Aligned_cols=189  Identities=14%  Similarity=0.109  Sum_probs=110.4

Q ss_pred             hHHHHHHHhcCCC--CHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchh
Q 010533          219 PKLLVNILIDGNE--DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQV  296 (508)
Q Consensus       219 i~~Lv~lL~~~~~--~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~  296 (508)
                      ++.++.=|+.+..  +.+....++++++.++.+-+..      .++|..|+++++..-+-++++++-.++.+-+--.+..
T Consensus       348 l~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~------~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~  421 (734)
T KOG1061|consen  348 LAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS------NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKY  421 (734)
T ss_pred             HHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh------hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCch
Confidence            3334443443332  5667788999999998776642      6889999999986655566667766766543211110


Q ss_pred             hhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHH
Q 010533          297 VASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVAR  376 (508)
Q Consensus       297 ~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~  376 (508)
                               .     -.++.+..-+.+-.+++...+..|.|+.-+.+=++        ....|-.++....++ .+.|+-
T Consensus       422 ---------~-----~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~--------a~elL~~f~en~~dE-~~~Vql  478 (734)
T KOG1061|consen  422 ---------E-----SVVAILCENLDSLQEPEAKAALIWILGEYAERIEN--------ALELLESFLENFKDE-TAEVQL  478 (734)
T ss_pred             ---------h-----hhhhhhcccccccCChHHHHHHHHHHhhhhhccCc--------HHHHHHHHHhhcccc-hHHHHH
Confidence                     1     13455555555555788888888988776654222        223344444444333 356666


Q ss_pred             HHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc
Q 010533          377 ICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEA  442 (508)
Q Consensus       377 ~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~  442 (508)
                      +.+.+.-.+.. .+..++.++.     .++..=..+.+++.++..+..-=+-|. .++..++.++-+
T Consensus       479 ~LLta~ik~Fl~~p~~tq~~l~-----~vL~~~~~d~~~~dlrDr~l~Y~RlLs-~~~~~a~~v~~~  539 (734)
T KOG1061|consen  479 ELLTAAIKLFLKKPTETQELLQ-----GVLPLATADTDNPDLRDRGLIYWRLLS-EDPLIAKDVVLA  539 (734)
T ss_pred             HHHHHHHHHHhcCCccHHHHHH-----HHHhhhhccccChhhhhhHHHHHHHhh-cCHHHHHHHHhc
Confidence            66666555432 3334443332     222222235667888888777666666 577777777644

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.01  E-value=22  Score=39.47  Aligned_cols=75  Identities=23%  Similarity=0.239  Sum_probs=58.1

Q ss_pred             hhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHH
Q 010533          345 EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMS  423 (508)
Q Consensus       345 e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~  423 (508)
                      +--..|+..|+.-.++.-|.+.    -.+|.++|+..+..||. .+.-..     .++..|++.++  .....|+..|.-
T Consensus       364 ~~~~siI~sGACGA~VhGlEDE----f~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfN--DE~~~VRL~ai~  432 (823)
T KOG2259|consen  364 EEEESIIPSGACGALVHGLEDE----FYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFN--DEIEVVRLKAIF  432 (823)
T ss_pred             ccccccccccccceeeeechHH----HHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhc--cHHHHHHHHHHH
Confidence            3445688889888888888763    23899999999999985 444432     35789999998  556789999999


Q ss_pred             HHHHHhc
Q 010533          424 IITVLSL  430 (508)
Q Consensus       424 aL~~La~  430 (508)
                      +|..|+.
T Consensus       433 aL~~Is~  439 (823)
T KOG2259|consen  433 ALTMISV  439 (823)
T ss_pred             HHHHHHH
Confidence            9998874

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=82.54  E-value=3.3  Score=43.96  Aligned_cols=187  Identities=10%  Similarity=0.007  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHhhcCChhhHHHH-HHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcC--CCcchhhhhhcchHHHHHHhc
Q 010533          235 ILNSGFAVVAASATGNEVVKESY-MELKIDELILEILSRQRNDSIQSLYDAIRVLLT--PDDDQVVASQVYGYARRFAKI  311 (508)
Q Consensus       235 v~~~a~~~L~~l~~~~e~nr~~i-~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~--~dd~r~~~~~a~~~~~~i~~~  311 (508)
                      +...|++++..... |+..|... .-..+...++..|.+..-.++..++|++.+++.  .+....+-+   ...|.++. 
T Consensus       407 v~~aA~Ra~~VyVL-Hp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s---~~eR~sg~-  481 (728)
T KOG4535|consen  407 VKAAASRALGVYVL-HPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDS---FQERFSGL-  481 (728)
T ss_pred             HHHHHHhhceeEEe-ccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchH---HHHHHHHH-
Confidence            33445555444432 33333332 233444555555543222566678899998862  111100000   11222221 


Q ss_pred             CCHHHHHHHHhcCC-C-hhHHHHHHHHHHHhhcChh----hHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHh
Q 010533          312 GIARALVHSLHAGL-S-SPSLISASIALKAVAVNDE----ICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKL  385 (508)
Q Consensus       312 g~i~~Lv~lL~~~~-d-~~~~~~a~~aL~~La~~~e----~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~L  385 (508)
                       .|..++.+..... + ..+..++..+|+|+..-=+    .--.....|.+..++...-   -.....|+.++|-+++||
T Consensus       482 -ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~---~~~~~kV~WNaCya~gNL  557 (728)
T KOG4535|consen  482 -LLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVL---TEAAMKVRWNACYAMGNL  557 (728)
T ss_pred             -HHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhccccee---cccccccchHHHHHHHHh
Confidence             2334444333222 2 3467788888888764211    0011112222222222211   122458999999999999


Q ss_pred             hCCchhHHHHHh-CC-cHHHHHHHHhccCCCHHHHHHHHHHHHHHhcC
Q 010533          386 AGSDSNKSAIIE-NG-GMDKLIVVSARFSDDASVLQEVMSIITVLSLR  431 (508)
Q Consensus       386 a~~~~~k~~Iv~-~G-gl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~  431 (508)
                      ..|+..+-.=.. +| ..+.|..++..| .+-.|+-+|+++|+.-..+
T Consensus       558 fkn~a~~lq~~~wA~~~F~~L~~Lv~~~-~NFKVRi~AA~aL~vp~~r  604 (728)
T KOG4535|consen  558 FKNPALPLQTAPWASQAFNALTSLVTSC-KNFKVRIRAAAALSVPGKR  604 (728)
T ss_pred             hcCccccccCCCchHHHHHHHHHHHHHh-ccceEeehhhhhhcCCCCc
Confidence            988776422111 12 357888888866 4788999999999876654

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=82.44  E-value=8.5  Score=36.31  Aligned_cols=130  Identities=7%  Similarity=-0.091  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHhcCCCcchhhhhh-cch----HHHHHH-hcCCHHHHHHHHhcCCC-----hhHHHHHHHHHHHhhcChhh
Q 010533          278 IQSLYDAIRVLLTPDDDQVVASQ-VYG----YARRFA-KIGIARALVHSLHAGLS-----SPSLISASIALKAVAVNDEI  346 (508)
Q Consensus       278 ~~~A~~aL~~L~~~dd~r~~~~~-a~~----~~~~i~-~~g~i~~Lv~lL~~~~d-----~~~~~~a~~aL~~La~~~e~  346 (508)
                      ...+|..|.||+..+.....+-+ ..+    ..+... +..++..|++++..+.+     ..-...++..|.|++..++-
T Consensus        12 adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~g   91 (192)
T PF04063_consen   12 ADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEG   91 (192)
T ss_pred             HHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHH
Confidence            34477888888876643221100 000    001111 22468888888877331     23456778889999999999


Q ss_pred             HhHHhhcC-CHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCC---cHHHHHHHH
Q 010533          347 CKSVAENG-GIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENG---GMDKLIVVS  408 (508)
Q Consensus       347 ~~~i~e~G-gi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~G---gl~~Lv~lL  408 (508)
                      ++.+.+.. +..++-+++.. .++.+..-..-++++|+|++-..+....+....   .+|.|+--|
T Consensus        92 R~~~l~~~~~~~~l~kLl~f-t~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPL  156 (192)
T PF04063_consen   92 RQFFLDPQRYDGPLQKLLPF-TEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPL  156 (192)
T ss_pred             HHHHhCchhhhhHHHHHHHH-hccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhc
Confidence            88888543 33233333331 222344566788999999998777666666533   345444444

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=81.54  E-value=12  Score=31.07  Aligned_cols=66  Identities=9%  Similarity=0.034  Sum_probs=43.9

Q ss_pred             CcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--cCcHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 010533          399 GGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAME--AGSGDLAIQAMLKFPNAQQLQRSSCFMIRNL  472 (508)
Q Consensus       399 Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~--~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL  472 (508)
                      -.+++++..+.  ..+..|+..||-+|.+++.--   +..++.  ....+.|.+++..  .++.|+ .+|..|-++
T Consensus        27 ~Il~pVL~~~~--D~d~rVRy~AcEaL~ni~k~~---~~~~l~~f~~IF~~L~kl~~D--~d~~Vr-~~a~~Ld~l   94 (97)
T PF12755_consen   27 EILPPVLKCFD--DQDSRVRYYACEALYNISKVA---RGEILPYFNEIFDALCKLSAD--PDENVR-SAAELLDRL   94 (97)
T ss_pred             HHHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcC--CchhHH-HHHHHHHHH
Confidence            35788888888  678999999999999998522   233332  2345666666643  345665 555666554

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=80.84  E-value=68  Score=32.58  Aligned_cols=195  Identities=18%  Similarity=0.117  Sum_probs=94.3

Q ss_pred             hhhhHHHHHHHHHHHHhhcCCCh----hHHHHHHHHHHhhccccCCCccccCCCCCCCCCChHHHHHHHHHHHhhcCCCC
Q 010533           62 RTISQEAFDEVVKENMEDLGMEP----TEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDK  137 (508)
Q Consensus        62 ~~isQetfd~~v~eni~~~~m~p----~eal~~aI~q~~~qgvdLs~i~~~~~~~~~~~~~~v~~~l~~L~~~l~~~~~~  137 (508)
                      -.-+|+.|.+.+++.|+.+.=.-    +.+++..+.-|..+=  +...+.          ....+.++.+...+...   
T Consensus        34 e~~~~~~~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~--~~d~v~----------~~~~tL~~~~~k~lkkg---   98 (309)
T PF05004_consen   34 EESSQEDLEDKLKEAIDLLTEKSSSTREAALEALIRALSSRY--LPDFVE----------DRRETLLDALLKSLKKG---   98 (309)
T ss_pred             cccchhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc--cHHHHH----------HHHHHHHHHHHHHhccC---
Confidence            34567777777777777765333    334443333332221  111000          11223444455544332   


Q ss_pred             CChhhHHHHHHHHHHHHHHhCCC-CChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhh---cCCcchhHH
Q 010533          138 FSDEDLNEMMGLFDKLIELCGGN-EGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLV---HDVQSTETF  213 (508)
Q Consensus       138 ~~~~~~~~~~~al~~L~~lc~~~-~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~---~~~~~~~~i  213 (508)
                          ..++..-|++.+..+|-.= .+... ..+. ....|+|...+.... ........|+.+|+.++   .+..     
T Consensus        99 ----~~~E~~lA~~~l~Ll~ltlg~g~~~-~ei~-~~~~~~L~~~l~d~s-~~~~~R~~~~~aLai~~fv~~~d~-----  166 (309)
T PF05004_consen   99 ----KSEEQALAARALALLALTLGAGEDS-EEIF-EELKPVLKRILTDSS-ASPKARAACLEALAICTFVGGSDE-----  166 (309)
T ss_pred             ----CHHHHHHHHHHHHHHhhhcCCCccH-HHHH-HHHHHHHHHHHhCCc-cchHHHHHHHHHHHHHHHhhcCCh-----
Confidence                3356666777777776530 01111 1222 246888888887642 23344455565555432   2110     


Q ss_pred             HhcCChHHHHHHHh---------cC--------CCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChH
Q 010533          214 RTGGGPKLLVNILI---------DG--------NEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRND  276 (508)
Q Consensus       214 ~~~ggi~~Lv~lL~---------~~--------~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~  276 (508)
                         ..+..+++.|.         ..        .+++.+...|+.+-+-+.+.-+..+-.-.-...++.|+.+|.+.+.+
T Consensus       167 ---~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~  243 (309)
T PF05004_consen  167 ---EETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVD  243 (309)
T ss_pred             ---hHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence               11121112221         11        12345666666555555444444221111124689999999987667


Q ss_pred             HHHHHHHHHH
Q 010533          277 SIQSLYDAIR  286 (508)
Q Consensus       277 ~~~~A~~aL~  286 (508)
                      ++.+|..+|.
T Consensus       244 VRiAAGEaiA  253 (309)
T PF05004_consen  244 VRIAAGEAIA  253 (309)
T ss_pred             HHHHHHHHHH
Confidence            7777655554

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	508
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-17
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-08
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-06
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	5e-15
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	8e-09
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-07
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-14
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-07
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-12
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-08
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-05
3nmz_A	458	APC variant protein; protein-protein complex, arma	7e-11
3nmz_A	458	APC variant protein; protein-protein complex, arma	6e-10
3nmz_A	458	APC variant protein; protein-protein complex, arma	6e-06
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-10
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	4e-08
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-07
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	4e-07
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	4e-07
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	6e-08
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	7e-07
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-06
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	7e-07
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-05
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	7e-07
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-06
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	6e-04
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	6e-06
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-04
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-04

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 83.8 bits (207), Expect = 3e-17
 Identities = 52/320 (16%), Positives = 115/320 (35%), Gaps = 21/320 (6%)

Query: 161 EGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPK 220
           + +   A+      V  +                    T+  L H  +        GG  
Sbjct: 44  KEASRHAIMRSPQMVSAIVRTM--QNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIP 101

Query: 221 LLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQS 280
            LV +L  G+    +L      +       E  K +       + ++ +L++     +  
Sbjct: 102 ALVKML--GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAI 159

Query: 281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAV 340
             D +++L   + +  +              G  +ALV+ +        L + S  LK +
Sbjct: 160 TTDCLQILAYGNQESKLI---------ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 210

Query: 341 AVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGG 400
           +V      ++ E GG+ AL   + D     ++ + + C   L  L  SD+        G 
Sbjct: 211 SVCSSNKPAIVEAGGMQALGLHLTD----PSQRLVQNCLWTLRNL--SDAATKQEGMEGL 264

Query: 401 MDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQ 460
           +  L+ +    SDD +V+     I++ L+  + +N     + G  +  ++ +L+  + + 
Sbjct: 265 LGTLVQLLG--SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 322

Query: 461 LQRSSCFMIRNLVARNPENS 480
           +   +   +R+L +R+ E  
Sbjct: 323 ITEPAICALRHLTSRHQEAE 342

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 56.1 bits (135), Expect = 1e-08
 Identities = 28/274 (10%), Positives = 82/274 (29%), Gaps = 22/274 (8%)

Query: 185 MRCGSKRVLDSCLKTMALLV-HDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVV 243
           +      V+      ++ L  ++ ++       GG + LV  ++   +  +I       +
Sbjct: 272 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331

Query: 244 ---AASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQ----- 295
               +     E+ + +        +++++L    +  +      +   L           
Sbjct: 332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLR 391

Query: 296 -------VVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICK 348
                  +V   V  +     +  +       +        +   + AL  +A +     
Sbjct: 392 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 451

Query: 349 SVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVS 408
            +     I   ++ +        + + R+   +L +LA       AI   G    L  + 
Sbjct: 452 VIRGLNTIPLFVQLLYS----PIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL 507

Query: 409 ARFSDDASVLQEVMSIITVLSLRSPENAARAMEA 442
              S +  V     +++  +S   P++  + +  
Sbjct: 508 H--SRNEGVATYAAAVLFRMSEDKPQDYKKRLSV 539

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 23/141 (16%), Positives = 53/141 (37%), Gaps = 14/141 (9%)

Query: 342 VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGM 401
           +N +   +      I  L + ++D     ++ V      ++ +L+  ++++ AI+ +  M
Sbjct: 3   INYQD-DAELATRAIPELTKLLND----EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 57

Query: 402 DKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQA---MLKFPNA 458
              IV + + ++D    +     +  LS    E      ++G     I A   ML  P  
Sbjct: 58  VSAIVRTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSG----GIPALVKMLGSPV- 111

Query: 459 QQLQRSSCFMIRNLVARNPEN 479
             +   +   + NL+      
Sbjct: 112 DSVLFYAITTLHNLLLHQEGA 132

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 77.0 bits (189), Expect = 5e-15
 Identities = 53/328 (16%), Positives = 117/328 (35%), Gaps = 23/328 (7%)

Query: 153 LIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTET 212
           + +L          A+      V  +                    T+  L H  +    
Sbjct: 174 VHQLSKKEA--SRHAIMRSPQMVSAIVRTMQ--NTNDVETARCTSGTLHNLSHHREGLLA 229

Query: 213 FRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSR 272
               GG   LVN+L  G+    +L      +       E  K +       + ++ +L++
Sbjct: 230 IFKSGGIPALVNML--GSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 287

Query: 273 QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLIS 332
                +    D +++L   + +  +              G  +ALV+ +        L +
Sbjct: 288 TNVKFLAITTDCLQILAYGNQESKLI---------ILASGGPQALVNIMRTYTYEKLLWT 338

Query: 333 ASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNK 392
            S  LK ++V      ++ E GG+ AL   + D     ++ + + C   L  L  SD+  
Sbjct: 339 TSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD----PSQRLVQNCLWTLRNL--SDAAT 392

Query: 393 SAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAM 452
                 G +  L+ +    SDD +V+     I++ L+  + +N     + G  +  ++ +
Sbjct: 393 KQEGMEGLLGTLVQLLG--SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV 450

Query: 453 LKFPNAQQLQRSSCFMIRNLVARNPENS 480
           L+  + + +   +   +R+L +R+ +  
Sbjct: 451 LRAGDREDITEPAICALRHLTSRHQDAE 478

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 57.4 bits (138), Expect = 8e-09
 Identities = 28/275 (10%), Positives = 83/275 (30%), Gaps = 22/275 (8%)

Query: 185 MRCGSKRVLDSCLKTMA-LLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAV- 242
           +      V+      ++ L  ++ ++       GG + LV  ++   +  +I        
Sbjct: 408 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467

Query: 243 --VAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQ----- 295
             + +     E+ + +        +++++L    +  +      +   L           
Sbjct: 468 RHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLR 527

Query: 296 -------VVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICK 348
                  +V   V  +     +  +       +        + + + AL  +A +     
Sbjct: 528 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRI 587

Query: 349 SVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVS 408
            +     I   ++ +        + + R+   +L +LA       AI   G    L  + 
Sbjct: 588 VIRGLNTIPLFVQLLYS----PIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL 643

Query: 409 ARFSDDASVLQEVMSIITVLSLRSPENAARAMEAG 443
              S +  V     +++  +S   P++  + +   
Sbjct: 644 H--SRNEGVATYAAAVLFRMSEDKPQDYKKRLSVE 676

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 51.6 bits (123), Expect = 4e-07
 Identities = 30/181 (16%), Positives = 63/181 (34%), Gaps = 19/181 (10%)

Query: 308 FAKIGIARALVHSLHAGLSSPSLI----SASIALKAVAVNDE--ICKSVAENGGIDALLR 361
           F +       + S     + P+ +      S  LK   VN       +      I  L +
Sbjct: 98  FPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTK 157

Query: 362 CIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEV 421
            ++D     ++ V      ++ +L+  ++++ AI+ +  M   IV + + ++D    +  
Sbjct: 158 LLND----EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCT 213

Query: 422 MSIITVLSLRSPENAARAMEAGSGDLAIQA---MLKFPNAQQLQRSSCFMIRNLVARNPE 478
              +  LS    E      ++G     I A   ML  P    +   +   + NL+     
Sbjct: 214 SGTLHNLS-HHREGLLAIFKSG----GIPALVNMLGSPVD-SVLFHAITTLHNLLLHQEG 267

Query: 479 N 479
            
Sbjct: 268 A 268

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 75.6 bits (186), Expect = 1e-14
 Identities = 53/320 (16%), Positives = 113/320 (35%), Gaps = 21/320 (6%)

Query: 161 EGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPK 220
           + +   A+      V  +                    T+  L H  +        GG  
Sbjct: 47  KEASRHAIMRSPQMVSAIVRTM--QNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIP 104

Query: 221 LLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQS 280
            LV +L  G+    +L      +       E  K +       + ++ +L++     +  
Sbjct: 105 ALVKML--GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAI 162

Query: 281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAV 340
             D +++L   + +                 G  +ALV+ +        L + S  LK +
Sbjct: 163 TTDCLQILAYGNQE---------SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 213

Query: 341 AVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGG 400
           +V      ++ E GG+ AL   + D     ++ + + C   L  L  SD+        G 
Sbjct: 214 SVCSSNKPAIVEAGGMQALGLHLTD----PSQRLVQNCLWTLRNL--SDAATKQEGMEGL 267

Query: 401 MDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQ 460
           +  L  V    SDD +V+     I++ L+  + +N     + G  +  ++ +L+  + + 
Sbjct: 268 LGTL--VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 325

Query: 461 LQRSSCFMIRNLVARNPENS 480
           +   +   +R+L +R+ E  
Sbjct: 326 ITEPAICALRHLTSRHQEAE 345

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 34/259 (13%), Positives = 68/259 (26%), Gaps = 47/259 (18%)

Query: 153 LIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTET 212
           L  L   N    N  +  + GG+E +           + + +  +  +  L    Q  E 
Sbjct: 290 LSNLTCNNY--KNKMMVCQVGGIEALVRTV-LRAGDREDITEPAICALRHLTSRHQEAEM 346

Query: 213 ----FRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASA--TGNEVVKESYMELKIDELI 266
                R   G  ++V +L   +  P I     A V                 E      +
Sbjct: 347 AQNAVRLHYGLPVVVKLLHPPSHWPLIK----ATVGLIRNLALCPANHAPLREQGAIPRL 402

Query: 267 LEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLS 326
           +++L R   D+ +            +  ++                              
Sbjct: 403 VQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE------------------------- 437

Query: 327 SPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA 386
                  + AL  +A +      +     I   ++ +        + + R+   +L +LA
Sbjct: 438 -----GCTGALHILARDVHNRIVIRGLNTIPLFVQLLYS----PIENIQRVAAGVLCELA 488

Query: 387 GSDSNKSAIIENGGMDKLI 405
                  AI   G    L 
Sbjct: 489 QDKEAAEAIEAEGATAPLT 507

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 22/133 (16%), Positives = 49/133 (36%), Gaps = 13/133 (9%)

Query: 350 VAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSA 409
                 I  L + ++D     ++ V      ++ +L+  ++++ AI+ +  M   IV + 
Sbjct: 13  ELATRAIPELTKLLND----EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 68

Query: 410 RFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQA---MLKFPNAQQLQRSSC 466
           + ++D    +     +  LS    E      ++G     I A   ML  P    +   + 
Sbjct: 69  QNTNDVETARCTAGTLHNLS-HHREGLLAIFKSG----GIPALVKMLGSPV-DSVLFYAI 122

Query: 467 FMIRNLVARNPEN 479
             + NL+      
Sbjct: 123 TTLHNLLLHQEGA 135

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 70.3 bits (171), Expect = 7e-13
 Identities = 85/542 (15%), Positives = 164/542 (30%), Gaps = 171/542 (31%)

Query: 1   MRTV-PKSYYKHFSNSEQIDFQKQSSLITL---PQPRAHPFV----PKDHPFFVRTDLTA 52
            +++  K    H   S+           TL    +     FV      ++ F + + +  
Sbjct: 42  PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM-SPIKT 100

Query: 53  HEMGP-PKTVRTISQ--------EAFDE--VVKENMEDLGMEPTEALQDAIQTL-SLQGV 100
            +  P   T   I Q        + F +  V +        +P   L+ A+  L   + V
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL-------QPYLKLRQALLELRPAKNV 153

Query: 101 DLSGIVKCVPGESSLKDNPLIQSLERLKQLD-----LNSKDKFSDEDLNEMMGLFDKLIE 155
            + G++    G++ +  +    S +   ++D     LN K+  S E + EM+      I+
Sbjct: 154 LIDGVLGS--GKTWVALDVC-LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 156 --LCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLV-HDVQSTET 212
                 ++ S N  +   +   EL            +R+L S      LLV  +VQ+ + 
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAEL------------RRLLKSKPYENCLLVLLNVQNAKA 258

Query: 213 FRT-GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILS 271
           +       K+L+          ++ +     ++A+ T +  +    M L  DE+   +L 
Sbjct: 259 WNAFNLSCKILLT-----TRFKQVTD----FLSAATTTHISLDHHSMTLTPDEV-KSLLL 308

Query: 272 RQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLI 331
           +  +   Q L                         R       R L           S+I
Sbjct: 309 KYLDCRPQDL------------------------PREVLTTNPRRL-----------SII 333

Query: 332 SASIALKAVAVNDEIC-----KSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA 386
           + SI        D +      K V      D L   I+ S               L+ L 
Sbjct: 334 AESIR-------DGLATWDNWKHV----NCDKLTTIIESS---------------LNVLE 367

Query: 387 GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGD 446
            ++  K         D+L V    F   A +   ++S+   +     ++    +      
Sbjct: 368 PAEYRKM-------FDRLSV----FPPSAHIPTILLSL---IWFDVIKSDVMVV------ 407

Query: 447 LAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMVSRNLSDRQRRTTKSARMQPL 506
                        +L + S      LV + P+ S  S+                   +  
Sbjct: 408 -----------VNKLHKYS------LVEKQPKESTISIP------SIYLELKVKLENEYA 444

Query: 507 MH 508
           +H
Sbjct: 445 LH 446

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.9 bits (152), Expect = 2e-10
 Identities = 80/615 (13%), Positives = 162/615 (26%), Gaps = 248/615 (40%)

Query: 1   MRTVPKSYYKHF-SNSEQIDFQ----------KQSSLITL------------PQPRAHPF 37
           + +  +   + F     +I+++          +Q S++T              Q  A   
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130

Query: 38  VPKDHPFF-VRTDL---------TAHEM-GPPKTVRTISQEAFDEVVKENMED------L 80
           V +  P+  +R  L             + G  KT   +        V+  M+       L
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL-DVCLSYKVQCKMDFKIFWLNL 189

Query: 81  GMEPT-EALQDAIQTLSLQ-------GVD---------------LSGIVKCVPGESSLK- 116
               + E + + +Q L  Q         D               L  ++K  P E+ L  
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 117 -DNPLIQSLERLKQLDLNSK------DK-------------FSDEDLN------EMMGLF 150
             N  +Q+ +     +L+ K       K              S +  +      E+  L 
Sbjct: 250 LLN--VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 151 DKLI---------ELCGGNEGSVNAAVATKNGGVELVCSIC-------------YKMRCG 188
            K +         E+   N                   SI              +K    
Sbjct: 308 LKYLDCRPQDLPREVLTTNP---------------RRLSIIAESIRDGLATWDNWKHVNC 352

Query: 189 SK--RVLDSCLKT------------MALLVHDVQSTETFRTGGGPKLLVNIL---IDGNE 231
            K   +++S L              +++                  LL  ++   +  ++
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT--------ILLS-LIWFDVIKSD 403

Query: 232 DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTP 291
              ++N             ++ K S            ++ +Q  +S  S+      L   
Sbjct: 404 VMVVVN-------------KLHKYS------------LVEKQPKESTISIPSIYLELKVK 438

Query: 292 DDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSV- 350
            +++                        +LH      S++      K    +D I   + 
Sbjct: 439 LENEY-----------------------ALHR-----SIVDHYNIPKTFDSDDLIPPYLD 470

Query: 351 -------------AENGGIDALLRCI--DDSGLQGNKTVARICCSLLSKLAGSDSNKSAI 395
                         E+     L R +  D   L+      +I      +   +  N S  
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE-----QKI------RHDSTAWNASGS 519

Query: 396 IENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKF 455
           I N     L        D+    + +++ I     +  EN   +      DL ++  L  
Sbjct: 520 ILNTLQQ-LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT---DL-LRIALMA 574

Query: 456 PN-------AQQLQR 463
            +        +Q+QR
Sbjct: 575 EDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 4e-04
 Identities = 35/231 (15%), Positives = 71/231 (30%), Gaps = 46/231 (19%)

Query: 227 IDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-------DSIQ 279
            D  +  ++  S    + +    + ++           L   +LS+Q         + ++
Sbjct: 33  FDCKDVQDMPKS----ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR 88

Query: 280 S----LYDAIRVLLTPDDDQVVASQVYGYAR--------RFAKIGIARA-LVHSLHAGLS 326
                L   I+   T      + +++Y   R         FAK  ++R      L   L 
Sbjct: 89  INYKFLMSPIK---TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145

Query: 327 SPSLISAS-IAL-------KAVAVNDEICKSVAE----NGGID--ALLRCIDDSGL--QG 370
              L  A  + +       K      ++C S       +  I    L  C     +    
Sbjct: 146 --ELRPAKNVLIDGVLGSGKTWVAL-DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202

Query: 371 NKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEV 421
            K + +I  +  S+   S + K  I       + ++ S  + +   VL  V
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 43/201 (21%), Positives = 85/201 (42%), Gaps = 26/201 (12%)

Query: 284 AIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV- 342
               +L+  ++Q+ A             G   ALV  L +  +   L  A  AL  +A  
Sbjct: 35  KFSQILSDGNEQIQA---------VIDAGALPALVQLLSSP-NEQILQEALWALSNIASG 84

Query: 343 NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGM 401
            +E  ++V + G + AL++ +       N+ + +     LS +A G +    A+I+ G +
Sbjct: 85  GNEQIQAVIDAGALPALVQLLSS----PNEQILQEALWALSNIASGGNEQIQAVIDAGAL 140

Query: 402 DKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQA---MLKFPNA 458
             L  V    S +  +LQE +  ++ ++    E     ++AG    A+ A   +L  PN 
Sbjct: 141 PAL--VQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG----ALPALVQLLSSPNE 194

Query: 459 QQLQRSSCFMIRNLVARNPEN 479
            Q+ + + + + N+ +   E 
Sbjct: 195 -QILQEALWALSNIASGGNEQ 214

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 33/155 (21%), Positives = 69/155 (44%), Gaps = 13/155 (8%)

Query: 325 LSSPSLISASIALKAV----AVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCS 380
           LSSP+      AL A+    +  +E  ++V + G + AL++ +       N+ + +    
Sbjct: 105 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS----PNEQILQEALW 160

Query: 381 LLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARA 439
            LS +A G +    A+I+ G +  L  V    S +  +LQE +  ++ ++    E     
Sbjct: 161 ALSNIASGGNEQIQAVIDAGALPAL--VQLLSSPNEQILQEALWALSNIASGGNEQKQAV 218

Query: 440 MEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA 474
            EAG     ++ +    N +++Q+ +   +  L +
Sbjct: 219 KEAG-ALEKLEQLQSHEN-EKIQKEAQEALEKLQS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 9/120 (7%)

Query: 312 GIARALVHSLHAGLSSPSLISASIAL-KAVAVNDEICKSVAENGGIDALLRCIDDSGLQG 370
           G   ALV  L +  +   L  A  AL    +  +E  ++V + G + AL++ +       
Sbjct: 138 GALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS----P 192

Query: 371 NKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS 429
           N+ + +     LS +A G +  K A+ E G ++KL  + +   ++  + +E    +  L 
Sbjct: 193 NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS--HENEKIQKEAQEALEKLQ 250

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 63.4 bits (154), Expect = 7e-11
 Identities = 56/404 (13%), Positives = 136/404 (33%), Gaps = 34/404 (8%)

Query: 91  AIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLF 150
            +  L +Q +  +     + G S        ++   L  +  +  D         ++ L 
Sbjct: 71  CLPLL-IQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLL 129

Query: 151 DKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST 210
           +++   C     +          G++   +    M    +  +   +  +  L  D +  
Sbjct: 130 EQIRAYCE----TCWEWQEAHEPGMDQDKNP---MPAPVEHQICPAVCVLMKLSFDEEHR 182

Query: 211 ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVV----AASATGNEVVKESYMELKIDEL- 265
                 GG + +  +L    E   + N  +++     A  A  N    +   +  +  + 
Sbjct: 183 HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 242

Query: 266 -ILEILSRQ-RNDSIQSLYDAIRVL--LTPDDDQVVASQVYGYARRFAKIGIARALVHSL 321
             +  L  Q +++S         VL  L+   D      +        ++G  +AL+   
Sbjct: 243 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTL-------REVGSVKALMECA 295

Query: 322 HAGLSSPSLISASIALKAVAVNDEICKS--VAENGGIDALLRCIDDSGLQGNKTVARICC 379
                  +L S   AL  ++ +    K+   A +G +  L+  +          +     
Sbjct: 296 LEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGG 355

Query: 380 SLL----SKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPEN 435
            +L    S +A ++ ++  + EN  +  L  +    S   +++      +  LS R+P++
Sbjct: 356 GILRNVSSLIATNEDHRQILRENNCLQTL--LQHLKSHSLTIVSNACGTLWNLSARNPKD 413

Query: 436 AARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPEN 479
                + G     ++ ++   + + +   S   +RNL+A  P  
Sbjct: 414 QEALWDMG-AVSMLKNLIHSKH-KMIAMGSAAALRNLMANRPAK 455

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 60.4 bits (146), Expect = 6e-10
 Identities = 54/314 (17%), Positives = 108/314 (34%), Gaps = 32/314 (10%)

Query: 175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPE 234
           VE+V S+   +    K  +   L  M+       S  + R  G   LL+ +L   ++D  
Sbjct: 31  VEMVYSLLSMLGTHDKDDMSRTLLAMS---SSQDSCISMRQSGCLPLLIQLLHGNDKDS- 86

Query: 235 ILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDD 294
                  V+  ++ G++  +      +    +  I+  Q +D        +  LL     
Sbjct: 87  -------VLLGNSRGSKEARA-----RASAALHNIIHSQPDDKRGRREIRVLHLLEQIRA 134

Query: 295 QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENG 354
                  +  A           +            +  A   L  ++ ++E   ++ E G
Sbjct: 135 YCETCWEWQEAHEPGMDQDKNPMPAP-----VEHQICPAVCVLMKLSFDEEHRHAMNELG 189

Query: 355 GIDALLRCI-------DDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIEN-GGMDKLI 405
           G+ A+   +         +    + T+ R     L+ L  G  +NK+ +    G M  L 
Sbjct: 190 GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRAL- 248

Query: 406 VVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSS 465
            V+   S+   + Q + S++  LS R+  N+ + +       A+         +   +S 
Sbjct: 249 -VAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSV 307

Query: 466 CFMIRNLVARNPEN 479
              + NL A   EN
Sbjct: 308 LSALWNLSAHCTEN 321

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 47.6 bits (113), Expect = 6e-06
 Identities = 32/204 (15%), Positives = 67/204 (32%), Gaps = 11/204 (5%)

Query: 287 VLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEI 346
           + L   +D+           + A+   + AL + +H+             L  +      
Sbjct: 76  IQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAY 135

Query: 347 CKSVAEN-GGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLI 405
           C++  E     +  +    +      +        +L KL+  + ++ A+ E GG+  + 
Sbjct: 136 CETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIA 195

Query: 406 ---------VVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFP 456
                              ++ +     +T L+     N A          A+ A LK  
Sbjct: 196 ELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE 255

Query: 457 NAQQLQRSSCFMIRNLVARNPENS 480
           + + LQ+    ++RNL  R   NS
Sbjct: 256 S-EDLQQVIASVLRNLSWRADVNS 278

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 61.2 bits (148), Expect = 2e-10
 Identities = 35/257 (13%), Positives = 75/257 (29%), Gaps = 27/257 (10%)

Query: 231 EDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVL-- 288
                L    + +       E +K   + +    +       ++    Q    A+ +L  
Sbjct: 8   HHSSGLVPRGSHMRGQRGEVEQMKSC-LRVLSQPMPPTAGEAEQAADQQEREGALELLAD 66

Query: 289 LTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPS----LISASIALKAVAVND 344
           L  + D          A  F ++     LV      L + +      +A +         
Sbjct: 67  LCENMD---------NAADFCQLSGMHLLVGRY---LEAGAAGLRWRAAQLIGTCSQNVA 114

Query: 345 EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDK 403
            I + V   G +  LLR +D        TV       +S L    ++     +   G   
Sbjct: 115 AIQEQVLGLGALRKLLRLLDRDA---CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSV 171

Query: 404 LIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQR 463
           L  + A       +  +   ++  L +  PE+       G     +  +++  ++     
Sbjct: 172 L--MRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVA-LVRTEHS-PFHE 227

Query: 464 SSCFMIRNLVARNPENS 480
                + +LV   P+  
Sbjct: 228 HVLGALCSLVTDFPQGV 244

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 54.1 bits (130), Expect = 4e-08
 Identities = 31/170 (18%), Positives = 65/170 (38%), Gaps = 12/170 (7%)

Query: 321 LHAGLSSPS---LISASIALKAVAVNDEICKSVAENGGIDALLR-------CIDDSGLQG 370
               + +P    +  A   L  ++ ++E   ++ E GG+ A+             +    
Sbjct: 37  DKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHY 96

Query: 371 NKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS 429
           + T+ R     L+ L  G  +NK+ +    G  + +V   + S+   + Q + S++  LS
Sbjct: 97  SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK-SESEDLQQVIASVLRNLS 155

Query: 430 LRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPEN 479
            R+  N+ + +       A+         +   +S    + NL A   EN
Sbjct: 156 WRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 205

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 43/231 (18%), Positives = 87/231 (37%), Gaps = 26/231 (11%)

Query: 260 LKIDELILEILSRQRNDSIQSLYDAIRVL--LTPDDDQVVASQVYGYARRFAKIGIARAL 317
           L++D  +  + +   + +++    A   L  LT  D    A+         +  G  RAL
Sbjct: 82  LQVDCEMYGLTNDHYSITLRRY--AGMALTNLTFGDVANKATLC-------SMKGCMRAL 132

Query: 318 VHSLHAGLSSPSLISASIALK--AVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVA 375
           V  L +  S       +  L+  +   +    K++ E G + AL+ C  +   +      
Sbjct: 133 VAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSV 191

Query: 376 RICCSLLSKLA-GSDSNKSAIIENGGMDKLIV---VSARFSDDASVLQEVMSIITVLSL- 430
               S L  L+     NK+ I    G    +V        ++  ++++    I+  +S  
Sbjct: 192 ---LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 248

Query: 431 --RSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPEN 479
              + ++     E       +Q  LK  +   +  ++C  + NL ARNP++
Sbjct: 249 IATNEDHRQILRENNCLQTLLQ-HLKSHS-LTIVSNACGTLWNLSARNPKD 297

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 51.0 bits (122), Expect = 4e-07
 Identities = 45/299 (15%), Positives = 93/299 (31%), Gaps = 67/299 (22%)

Query: 156 LCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLV--HDVQSTETF 213
           L  G+  +  A + +  G +  + +    ++  S+ +       +  L    DV S +T 
Sbjct: 111 LTFGDVAN-KATLCSMKGCMRALVAQ---LKSESEDLQQVIASVLRNLSWRADVNSKKTL 166

Query: 214 RTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ 273
           R  G  K L+   ++  ++  + +        SA  N                L     +
Sbjct: 167 REVGSVKALMECALEVKKESTLKS------VLSALWN----------------LSAHCTE 204

Query: 274 RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISA 333
               I ++  A+  L+                            +       +   + S 
Sbjct: 205 NKADICAVDGALAFLV--------------------------GTLTYRSQTNTLAIIESG 238

Query: 334 SIALKAV----AVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKL-AGS 388
              L+ V    A N++  + + EN  +  LL+ +       + T+    C  L  L A +
Sbjct: 239 GGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS----HSLTIVSNACGTLWNLSARN 294

Query: 389 DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSP--ENAARAMEAGSG 445
             ++ A+ + G +  L   +   S    +     + +  L    P     A  M  GS 
Sbjct: 295 PKDQEALWDMGAVSML--KNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSS 351

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 51.0 bits (122), Expect = 4e-07
 Identities = 26/147 (17%), Positives = 48/147 (32%), Gaps = 14/147 (9%)

Query: 343 NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMD 402
                   A   G+D     +        +        +L KL+  + ++ A+ E GG+ 
Sbjct: 21  ETCWEWQEAHEPGMDQDKNPMPAP----VEHQICPAVCVLMKLSFDEEHRHAMNELGGLQ 76

Query: 403 KLI---------VVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAML 453
            +                    ++ +     +T L+     N A          A+ A L
Sbjct: 77  AIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQL 136

Query: 454 KFPNAQQLQRSSCFMIRNLVARNPENS 480
           K  + + LQ+    ++RNL  R   NS
Sbjct: 137 KSES-EDLQQVIASVLRNLSWRADVNS 162

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 53.7 bits (129), Expect = 6e-08
 Identities = 44/335 (13%), Positives = 103/335 (30%), Gaps = 34/335 (10%)

Query: 153 LIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA-LLVHDVQSTE 211
           L  +  GN       +  + G V +   +   +    + V +  +  +  +        +
Sbjct: 89  LTNIASGNSLQTRIVI--QAGAVPIFIEL---LSSEFEDVQEQAVWALGNIAGDSTMCRD 143

Query: 212 TFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILS 271
                     L+ +    N      N+ +A+           K    E       L +LS
Sbjct: 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLC-----RGKSPPPEFAKVSPCLNVLS 198

Query: 272 RQ-RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSL 330
                     L DA   L        ++       +     G+ R LV  L         
Sbjct: 199 WLLFVSDTDVLADACWALSY------LSDGPNDKIQAVIDAGVCRRLVELL----MHNDY 248

Query: 331 ISASIALKA----VAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKL- 385
              S AL+A    V  +D   + +     + +LL  +        +++ +  C  +S + 
Sbjct: 249 KVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS----PKESIKKEACWTISNIT 304

Query: 386 AGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSG 445
           AG+ +    +I+      LI +    + +    +E    IT  +        + +     
Sbjct: 305 AGNRAQIQTVIDANIFPALISILQ--TAEFRTRKEAAWAITNATSGGSAEQIKYLVELGC 362

Query: 446 DLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENS 480
              +  +L   ++ ++ + +   + N++    + +
Sbjct: 363 IKPLCDLLTVMDS-KIVQVALNGLENILRLGEQEA 396

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 51.0 bits (121), Expect = 7e-07
 Identities = 52/324 (16%), Positives = 101/324 (31%), Gaps = 34/324 (10%)

Query: 157 CGGNEGSVNAAVATKNGGVELVCSICYKMRCGSK---RVLDSCLKTMALLVHDVQSTETF 213
            G   G   A     +G    +   C +          +       +A L  D +  E  
Sbjct: 357 LGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKL 416

Query: 214 RTGGGP-KLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSR 272
                    L+++   GN+              +   N        E+  + + L   ++
Sbjct: 417 IEDKASIHALMDLARGGNQSC-------LYGVVTTFVNLCNAYEKQEMLPEMIELAKFAK 469

Query: 273 QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLIS 332
           Q       L          DD   +  ++       A  GI  AL        S  S   
Sbjct: 470 QHIPEEHEL----------DDVDFINKRI----TVLANEGITTALCALAKTE-SHNSQEL 514

Query: 333 ASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNK 392
            +  L AV    E+   V + GG+ ALL       L+G +   R     L+++  + + +
Sbjct: 515 IARVLNAVCGLKELRGKVVQEGGVKALL----RMALEGTEKGKRHATQALARIGITINPE 570

Query: 393 SAIIENGGMDKLIVVSARFSDDASVLQ--EVMSIITVLSLRSPENAARAMEAGSGDLAIQ 450
            +      +D +  +      D + L+  E +  +T L+  +     R ++         
Sbjct: 571 VSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEY 630

Query: 451 AMLKFPNAQQLQRSSCFMIRNLVA 474
            +++      L R++   + NLV 
Sbjct: 631 YLMEDH--LYLTRAAAQCLCNLVM 652

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 50.2 bits (119), Expect = 1e-06
 Identities = 26/217 (11%), Positives = 74/217 (34%), Gaps = 14/217 (6%)

Query: 264 ELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHA 323
           + +L +         +    A+  +    + +V  S           + + R L++ L  
Sbjct: 539 KALLRMALEGTEKGKRHATQALARIGITINPEVSFSG-------QRSLDVIRPLLNLLQQ 591

Query: 324 GLSSPSLISASIALKAVA-VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLL 382
             ++     + +AL  +A +N+ + + + +  G+  +   + +     +  + R     L
Sbjct: 592 DCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED----HLYLTRAAAQCL 647

Query: 383 SKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEA 442
             L  S+        N    K + +     +D          + +++  S +   + +  
Sbjct: 648 CNLVMSEDVIKMFEGNNDRVKFLALLCE-DEDEETATACAGALAIITSVSVKCCEKILAI 706

Query: 443 GSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPEN 479
            S    +  ++  P+   +Q     +I N++    E 
Sbjct: 707 ASWLDILHTLIANPS-PAVQHRGIVIILNMINAGEEI 742

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 49.2 bits (118), Expect = 7e-07
 Identities = 24/135 (17%), Positives = 57/135 (42%), Gaps = 15/135 (11%)

Query: 349 SVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVV 407
                  +  +++ ++      ++   +     LS++A G +    A+I+ G +  L  V
Sbjct: 7   HHHHGSELPQMVQQLNS----PDQQELQSALRKLSQIASGGNEQIQAVIDAGALPAL--V 60

Query: 408 SARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAM---LKFPNAQQLQRS 464
               S +  +LQE +  ++ ++    E     ++AG    A+ A+   L  PN Q + + 
Sbjct: 61  QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG----ALPALVQLLSSPNEQ-ILQE 115

Query: 465 SCFMIRNLVARNPEN 479
           + + + N+ +   E 
Sbjct: 116 ALWALSNIASGGNEQ 130

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 30/152 (19%), Positives = 64/152 (42%), Gaps = 26/152 (17%)

Query: 284 AIRVLLTPDDDQVVASQVYGYARRFAKIGIARA-LVHSLHAGLSSPSLISASIALKAV-- 340
           A+  + +  ++Q+ A              +  A  + +L   LSSP+      AL A+  
Sbjct: 77  ALSNIASGGNEQIQA--------------VIDAGALPALVQLLSSPNEQILQEALWALSN 122

Query: 341 --AVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIE 397
             +  +E  ++V + G + AL++ +       N+ + +     LS +A G +  K A+ E
Sbjct: 123 IASGGNEQIQAVIDAGALPALVQLLSS----PNEQILQEALWALSNIASGGNEQKQAVKE 178

Query: 398 NGGMDKLIVVSARFSDDASVLQEVMSIITVLS 429
            G ++KL     +  ++  + +E    +  L 
Sbjct: 179 AGALEKL--EQLQSHENEKIQKEAQEALEKLQ 208

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 49.6 bits (118), Expect = 7e-07
 Identities = 34/180 (18%), Positives = 59/180 (32%), Gaps = 20/180 (11%)

Query: 315 RALVHSLHAGLSSPSLISASI-ALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNK 372
              V  L A    PS ISA+   ++       E  K V +  GI  LL+ +       N+
Sbjct: 11  ERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV----QNE 66

Query: 373 TVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLR 431
            V R  C  L  L    + NK  + E  G+ +L+ V  + + D    +++  ++  LS  
Sbjct: 67  DVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQV-LKQTRDLETKKQITGLLWNLSSN 125

Query: 432 SPENAARAMEAGS------------GDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPEN 479
                    EA                              +  +    +RN+ +   + 
Sbjct: 126 DKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADG 185

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 49.2 bits (116), Expect = 2e-06
 Identities = 31/205 (15%), Positives = 66/205 (32%), Gaps = 18/205 (8%)

Query: 312 GIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQG 370
                ++  L          +A+  L+ +   ND++   V +  GI  L+  +D      
Sbjct: 48  PELPEVIAMLGFR-LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH----P 102

Query: 371 NKTVARICCSLLSKLA--GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVL 428
            K V    C  L  ++      NK AI    G+  L+ +  R + D  + + +   +  L
Sbjct: 103 KKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRL-LRKARDMDLTEVITGTLWNL 161

Query: 429 SLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMVSR 488
           S          ++     L  + ++     ++     C   +            +    R
Sbjct: 162 S-SHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDC---KPRHIEWESVLTNTAGCLR 217

Query: 489 NLSD-----RQRRTTKSARMQPLMH 508
           N+S      R++       +  L+ 
Sbjct: 218 NVSSERSEARRKLRECDGLVDALIF 242

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 41.5 bits (96), Expect = 6e-04
 Identities = 25/167 (14%), Positives = 58/167 (34%), Gaps = 13/167 (7%)

Query: 245 ASATGNEVVKESYMELKIDELILEILSRQRNDSIQ-SLYDAIRVLLTPDDDQVVASQVYG 303
            + T      E   + ++  + + +L   +  +I  +   AI+ L           +   
Sbjct: 292 NTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSA- 350

Query: 304 YARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCI 363
                 +     A+   L        + +AS AL+ +AV+    + +     I  L++ +
Sbjct: 351 ----LRQEKALSAIADLLTNE-HERVVKAASGALRNLAVDARNKELIG-KHAIPNLVKNL 404

Query: 364 DDSGLQGNK-----TVARICCSLLSKLAGSDSNKSAIIENGGMDKLI 405
                  +      TV  I  ++   +A +      + E  G++KL+
Sbjct: 405 PGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLV 451

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 47.7 bits (113), Expect = 6e-06
 Identities = 37/274 (13%), Positives = 80/274 (29%), Gaps = 18/274 (6%)

Query: 202 LLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELK 261
           +        +     G    L+ +L   +    +       +  + +     K     L 
Sbjct: 170 IAGDGSAFRDLVIKHGAIDPLLALLAVPDLS-TLACGYLRNLTWTLSNLCRNKNPAPPLD 228

Query: 262 IDELILEILSR-QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHS 320
             E IL  L R   ++  + L D+   +        +            K G+   LV  
Sbjct: 229 AVEQILPTLVRLLHHNDPEVLADSCWAISY------LTDGPNERIEMVVKKGVVPQLVKL 282

Query: 321 LHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICC 379
           L A    P +  A  A+  +    DE  + V + G +      + +        + +   
Sbjct: 283 LGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP----KTNIQKEAT 337

Query: 380 SLLSKL-AGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAAR 438
             +S + AG       ++ +G +    +V      D    +E    IT  +         
Sbjct: 338 WTMSNITAGRQDQIQQVVNHGLVPF--LVGVLSKADFKTQKEAAWAITNYTSGGTVEQIV 395

Query: 439 AMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNL 472
            +        +  +L   +  ++ +     I N+
Sbjct: 396 YLVHCGIIEPLMNLLSAKDT-KIIQVILDAISNI 428

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 31/229 (13%), Positives = 77/229 (33%), Gaps = 19/229 (8%)

Query: 202 LLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELK 261
           L     +  E     G    LV +L  G  +  I+      +    TG +   +  ++  
Sbjct: 259 LTDGPNERIEMVVKKGVVPQLVKLL--GATELPIVTPALRAIGNIVTGTDEQTQKVIDAG 316

Query: 262 IDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSL 321
              +   +L+  + +  +     +  +     DQ+     +G              +  +
Sbjct: 317 ALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG----------LVPFLVGV 366

Query: 322 HAGLSSPSLISASIALKAVAV--NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICC 379
            +     +   A+ A+         E    +   G I+ L+  +     +  + +     
Sbjct: 367 LSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAIS 426

Query: 380 SLLS---KLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSII 425
           ++     KL  ++     I E GG+DK+   + +  ++ SV +  +++I
Sbjct: 427 NIFQAAEKLGETEKLSIMIEECGGLDKI--EALQRHENESVYKASLNLI 473

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 43/337 (12%), Positives = 104/337 (30%), Gaps = 37/337 (10%)

Query: 153 LIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA-LLVHDVQSTE 211
           L  +  G        V      V L       +  GS  V +  +  +  +        +
Sbjct: 155 LTNIASGTSAQTKVVV--DADAVPL---FIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 209

Query: 212 TFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV-KESYMELKIDELILEIL 270
                   + ++ +                  A     N    K+   +  +    L  L
Sbjct: 210 YVLQCNAMEPILGLFNSNKPS-------LIRTATWTLSNLCRGKKPQPDWSVVSQALPTL 262

Query: 271 SRQ-RNDSIQSLYDAIRVL--LTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSS 327
           ++   +   ++L DA   +  L+    + + + +         + I + LV  L    S+
Sbjct: 263 AKLIYSMDTETLVDACWAISYLSDGPQEAIQAVI--------DVRIPKRLVELLSHE-ST 313

Query: 328 PSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKL- 385
                A  A+  +   ND   + V   G + AL   +        + + +  C  +S + 
Sbjct: 314 LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP----KENIKKEACWTISNIT 369

Query: 386 AGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAA--RAMEAG 443
           AG+     A+I+   +  L+ +      +    +E    I+  S    +     R + + 
Sbjct: 370 AGNTEQIQAVIDANLIPPLVKLLE--VAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQ 427

Query: 444 SGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENS 480
                +  +L+  +  ++   +   + N++     + 
Sbjct: 428 GCIKPLCDLLEIADN-RIIEVTLDALENILKMGEADK 463

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	508
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.98
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.97
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.97
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.97
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.97
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.97
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.96
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.96
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.96
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.96
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.96
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.95
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.94
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.93
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.92
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.91
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.91
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.9
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.9
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.9
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.89
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.85
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.84
3grl_A	651	General vesicular transport factor P115; vesicle t	99.71
3grl_A	651	General vesicular transport factor P115; vesicle t	99.61
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.13
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.1
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.08
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.08
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.96
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	98.91
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	98.9
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	98.85
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	98.83
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.77
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.71
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.61
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.55
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.52
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.49
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.49
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.45
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.39
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.31
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.18
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.18
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.17
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	97.99
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.91
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	97.9
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.79
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.7
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.49
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	97.43
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.25
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.21
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.17
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.13
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.05
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	96.78
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	96.55
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	96.44
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	96.33
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	96.24
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.83
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	95.51
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	95.41
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	95.31
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	94.75
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	94.19
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	94.17
2x1g_F	971	Cadmus; transport protein, developmental protein,	93.57
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	93.47
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	93.25
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	92.83
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	92.76
2x19_B	963	Importin-13; nuclear transport, protein transport;	92.64
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	92.55
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	91.34
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	91.11
2x1g_F	971	Cadmus; transport protein, developmental protein,	90.63
2x19_B	963	Importin-13; nuclear transport, protein transport;	89.78
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	89.2
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	88.95
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	88.6
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	88.31
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	87.47
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	87.45
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	86.04
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	85.91
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	84.29
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	83.34
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	80.83

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1.1e-36  Score=322.17  Aligned_cols=343  Identities=13%  Similarity=0.125  Sum_probs=283.5

Q ss_pred             HHHHHHHHhhcCCC-----CCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcH----------HHHHHHHhccc-
Q 010533          123 SLERLKQLDLNSKD-----KFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGV----------ELVCSICYKMR-  186 (508)
Q Consensus       123 ~l~~L~~~l~~~~~-----~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gav----------p~Lv~lL~~~~-  186 (508)
                      ++..|.+++.....     +-..++.+.+.+|++.|.++...  .++......+.|++          +.+++++.+.. 
T Consensus        71 ~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  148 (458)
T 3nmz_A           71 CLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHS--QPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP  148 (458)
T ss_dssp             CHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHH--SCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred             CHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHcc--CcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence            46667777765310     11225679999999999999987  67777788888888          77778787642 


Q ss_pred             CCC----------HHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcC---------CCCHHHHHHHHHHHHHhh
Q 010533          187 CGS----------KRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDG---------NEDPEILNSGFAVVAASA  247 (508)
Q Consensus       187 ~~~----------~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~---------~~~~~v~~~a~~~L~~l~  247 (508)
                      ..+          ...+++|+++|.++..+.+.|..+++.||++.|+.+|...         ..+..++..|+|+|.++|
T Consensus       149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa  228 (458)
T 3nmz_A          149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT  228 (458)
T ss_dssp             SSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence            011          1346689999999987777899999999999999999521         134678999999999999


Q ss_pred             cCChhhHHHHHHc-CcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCC
Q 010533          248 TGNEVVKESYMEL-KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLS  326 (508)
Q Consensus       248 ~~~e~nr~~i~~~-G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d  326 (508)
                      ..++.+|..+... |+||.|+.+|++++.+++..|||+|++|+..++.        ++...|++.|+|++|+++|....+
T Consensus       229 ~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~--------~~k~~I~~~GaI~~LV~lLl~s~~  300 (458)
T 3nmz_A          229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADV--------NSKKTLREVGSVKALMECALEVKK  300 (458)
T ss_dssp             TTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCH--------HHHHHHHHTTHHHHHHHHHTTCCS
T ss_pred             CCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCH--------HHHHHHHHcCCHHHHHHHHhcCCC
Confidence            8888888888755 5599999999988889999999999999975321        244567799999999998766557


Q ss_pred             hhHHHHHHHHHHHhhc-ChhhHhHHh-hcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh----CCchhHHHHHhCCc
Q 010533          327 SPSLISASIALKAVAV-NDEICKSVA-ENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA----GSDSNKSAIIENGG  400 (508)
Q Consensus       327 ~~~~~~a~~aL~~La~-~~e~~~~i~-e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La----~~~~~k~~Iv~~Gg  400 (508)
                      ..++..++.+|++|+. .++++..|+ +.||++.|+.+|....+..+.++++.|+++|++|+    ++++++..|++.|+
T Consensus       301 ~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~  380 (458)
T 3nmz_A          301 ESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC  380 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHccc
Confidence            7899999999999999 889999988 79999999999986533211258999999999998    58999999999999


Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccc
Q 010533          401 MDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPEN  479 (508)
Q Consensus       401 l~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~  479 (508)
                      +|.|+.+|.  +.+..++++|+++|+||+.++++++..+++.|+++.|+++|+.  .+..+++.|+|||+||+.++|+-
T Consensus       381 i~~Lv~LL~--~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s--~~~~v~~~Aa~AL~nL~~~~p~k  455 (458)
T 3nmz_A          381 LQTLLQHLK--SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS--KHKMIAMGSAAALRNLMANRPAK  455 (458)
T ss_dssp             HHHHHHHSS--CSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTC--SSHHHHHHHHHHHHHHHTCCSCC
T ss_pred             HHHHHHHHc--CCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHcCCHhh
Confidence            999999998  6678999999999999998899999999999999999999953  57899999999999999988754

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=6e-36  Score=322.27  Aligned_cols=336  Identities=12%  Similarity=0.146  Sum_probs=290.4

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHH
Q 010533          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (508)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~  202 (508)
                      +++.|...+.+.       |.+.+.+|+..+|++.+.+ ..+....++++|+||.||++|++.  ++.+++..|+|+|++
T Consensus        58 ~i~~~v~~l~s~-------d~~~q~~a~~~~rklls~e-~~ppi~~ii~~G~ip~LV~lL~~~--~~~~lq~~Aa~aL~n  127 (510)
T 3ul1_B           58 SVEDIVKGINSN-------NLESQLQATQAARKLLSRE-KQPPIDNIIRAGLIPKFVSFLGKT--DCSPIQFESAWALTN  127 (510)
T ss_dssp             CHHHHHHHHTSS-------CHHHHHHHHHHHHHHHTCS-SCCCHHHHHHTTHHHHHHHHTTCT--TCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhcCC-------CHHHHHHHHHHHHHHhcCC-CCchHHHHHHCCCHHHHHHHHCCC--CCHHHHHHHHHHHHH
Confidence            478888888876       8999999999999987753 333457788999999999999875  467899999999999


Q ss_pred             hhcCC-cchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-----H
Q 010533          203 LVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-----D  276 (508)
Q Consensus       203 l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-----~  276 (508)
                      ++.+. +.+..+++.|++|.|+++|.  +++.++++.++|+|++++.+++.+|..+.+.|++++|+.+|..++.     .
T Consensus       128 ias~~~e~~~~vv~~GaIp~Lv~lL~--s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~  205 (510)
T 3ul1_B          128 IASGTSEQTKAVVDGGAIPAFISLLA--SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG  205 (510)
T ss_dssp             HHTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHH
T ss_pred             HhcCCHHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHH
Confidence            98765 55688999999999999997  4689999999999999999899999999999999999999987543     5


Q ss_pred             HHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcC-hhhHhHHhhcCC
Q 010533          277 SIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DEICKSVAENGG  355 (508)
Q Consensus       277 ~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~-~e~~~~i~e~Gg  355 (508)
                      ++++++|+|.+++.+.++...+         ....|+++.|+.+|.+. +++++.++||+|++|+.. ++....+++.|+
T Consensus       206 ~~~~a~~~L~nl~~~~~~~~~~---------~~~~~~lp~L~~LL~~~-~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~  275 (510)
T 3ul1_B          206 YLRNLTWTLSNLCRNKNPAPPL---------DAVEQILPTLVRLLHHN-DPEVLADSCWAISYLTDGPNERIEMVVKKGV  275 (510)
T ss_dssp             HHHHHHHHHHHHHCCCSSCCCH---------HHHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHhhcccchhHH---------HHHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhchhhhHHHHHhccc
Confidence            7889999999999877654321         12347899999999864 678999999999999985 456678889999


Q ss_pred             HHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChh
Q 010533          356 IDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPE  434 (508)
Q Consensus       356 i~~Lv~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~  434 (508)
                      ++.|+.+|...    +..++..++.+|++|+ +++.++..+++.|+++.|+.+|.  +.++.+++.|||+|.||+.++++
T Consensus       276 i~~Lv~lL~~~----~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~--~~~~~v~~~A~~aL~nl~a~~~~  349 (510)
T 3ul1_B          276 VPQLVKLLGAT----ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT--NPKTNIQKEATWTMSNITAGRQD  349 (510)
T ss_dssp             HHHHHHHHTCS----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTT--CSSHHHHHHHHHHHHHHTTSCHH
T ss_pred             chhhhhhhcCC----ChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhc--CCCHHHHHHHHHHHHHHHcCcHH
Confidence            99999999863    3489999999999996 57788999999999999999998  67899999999999999999999


Q ss_pred             hHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhh-cCccchHHHHhccc
Q 010533          435 NAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA-RNPENSFCSVMVSR  488 (508)
Q Consensus       435 ~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~-~~~e~~~~~~~~g~  488 (508)
                      +...+.+.|+++.|+++|+.  .+..++++|+|+|+|++. .+++++.++++.|.
T Consensus       350 ~~~~v~~~g~i~~Lv~lL~~--~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~  402 (510)
T 3ul1_B          350 QIQQVVNHGLVPFLVGVLSK--ADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI  402 (510)
T ss_dssp             HHHHHHHTTHHHHHHHHHHS--SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCC
Confidence            99999999999999999975  468999999999999987 47888899998884

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1.8e-36  Score=320.53  Aligned_cols=339  Identities=16%  Similarity=0.137  Sum_probs=264.5

Q ss_pred             HHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccC---------CCHH
Q 010533          121 IQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRC---------GSKR  191 (508)
Q Consensus       121 ~~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~---------~~~~  191 (508)
                      .+.+..|.+.+.+.       |.++   ..+.|-.++.   +++.|..++++|+||.||++|+..+.         ++++
T Consensus        31 ~~~~~~l~~~~~~~-------~~~~---~~~~ll~~~~---~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~   97 (458)
T 3nmz_A           31 VEMVYSLLSMLGTH-------DKDD---MSRTLLAMSS---SQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKE   97 (458)
T ss_dssp             ---------------------CCHH---HHHHHHHHHS---STTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHH
T ss_pred             HHHHHHHHHHhcCC-------CHHH---HHHHHHHHHc---CCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHH
Confidence            35566677766554       5553   5556666665   57799999999999999999997543         4579


Q ss_pred             HHHHHHHHHHHhhcCCcch-hHHHhcCCh----------HHHHHHHhcCCCCH------------HHHHHHHHHHHHhhc
Q 010533          192 VLDSCLKTMALLVHDVQST-ETFRTGGGP----------KLLVNILIDGNEDP------------EILNSGFAVVAASAT  248 (508)
Q Consensus       192 ~~~~al~aLa~l~~~~~~~-~~i~~~ggi----------~~Lv~lL~~~~~~~------------~v~~~a~~~L~~l~~  248 (508)
                      ++.+|.|+|++++.+++.. ...++.|.+          +.++++|...+.+.            ..+++|+|+|.++ +
T Consensus        98 ~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nl-s  176 (458)
T 3nmz_A           98 ARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKL-S  176 (458)
T ss_dssp             HHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHH-T
T ss_pred             HHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHh-c
Confidence            9999999999999887543 444455555          55677776543111            2234999999999 5


Q ss_pred             CChhhHHHHHHcCcHHHHHHHHhcC-----------ChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhc-CCHHH
Q 010533          249 GNEVVKESYMELKIDELILEILSRQ-----------RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKI-GIARA  316 (508)
Q Consensus       249 ~~e~nr~~i~~~G~i~~Lv~lL~~~-----------~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~-g~i~~  316 (508)
                      .+++||+.+++.|++++|+.+|...           +..++++|+|+|.+|+.+++.         +...+.+. |+||+
T Consensus       177 ~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~---------~k~~i~~~~GaIp~  247 (458)
T 3nmz_A          177 FDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA---------NKATLCSMKGCMRA  247 (458)
T ss_dssp             TSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHH---------HHHHHHHCHHHHHH
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcc---------cHHHHHHcCCcHHH
Confidence            5699999999999999999999531           126789999999999987742         23345444 56999


Q ss_pred             HHHHHhcCCChhHHHHHHHHHHHhhcC--hhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CchhHH
Q 010533          317 LVHSLHAGLSSPSLISASIALKAVAVN--DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKS  393 (508)
Q Consensus       317 Lv~lL~~~~d~~~~~~a~~aL~~La~~--~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~  393 (508)
                      |+.+|++. +++++..++|+|++|+..  ++++..|++.|||+.|+++|..+.   +..+++.++.+|++|+. +++++.
T Consensus       248 LV~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~---~~~v~~~A~~aL~nLs~~~~~nk~  323 (458)
T 3nmz_A          248 LVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK---KESTLKSVLSALWNLSAHCTENKA  323 (458)
T ss_dssp             HHHGGGCS-CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCC---SHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHhCC-CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCC---CHHHHHHHHHHHHHHccCCHHHHH
Confidence            99999964 688999999999999984  678899999999999999875432   34899999999999998 889999


Q ss_pred             HHH-hCCcHHHHHHHHhccCCCH--HHHHHHHHHHHHHhc---CChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHH
Q 010533          394 AII-ENGGMDKLIVVSARFSDDA--SVLQEVMSIITVLSL---RSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCF  467 (508)
Q Consensus       394 ~Iv-~~Ggl~~Lv~lL~~~~~~~--~v~e~a~~aL~~La~---~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~  467 (508)
                      .|+ ..|++|.|+++|....+..  .++++|+++|+||+.   +++++++.+++.|+++.|+++|+.  .+..++++|||
T Consensus       324 ~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~--~~~~v~~~A~~  401 (458)
T 3nmz_A          324 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS--HSLTIVSNACG  401 (458)
T ss_dssp             HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSC--SCHHHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcC--CChHHHHHHHH
Confidence            998 7899999999998432221  599999999999997   799999999999999999999965  45789999999


Q ss_pred             HHHHhhhcCccchHHHHhccc
Q 010533          468 MIRNLVARNPENSFCSVMVSR  488 (508)
Q Consensus       468 aL~nL~~~~~e~~~~~~~~g~  488 (508)
                      +|+||+.++++++..++++|+
T Consensus       402 aL~nLa~~~~~~~~~i~~~G~  422 (458)
T 3nmz_A          402 TLWNLSARNPKDQEALWDMGA  422 (458)
T ss_dssp             HHHHHHSSCHHHHHHHHHHTH
T ss_pred             HHHHHHcCCHHHHHHHHHCCC
Confidence            999999889999999999985

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=1.4e-34  Score=312.79  Aligned_cols=336  Identities=12%  Similarity=0.147  Sum_probs=289.6

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHH
Q 010533          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (508)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~  202 (508)
                      .++.+...+.+.       |.+.+.+++..+|++.+.+ ..+....+++.|+||.||.+|+..  ++.+++..|+++|++
T Consensus        77 ~l~~lv~~l~s~-------d~~~q~~a~~~~rklLs~~-~~~~i~~ii~~G~ip~Lv~lL~~~--~~~~~q~~Aa~aL~n  146 (529)
T 3tpo_A           77 SVEDIVKGINSN-------NLESQLQATQAARKLLSRE-KQPPIDNIIRAGLIPKFVSFLGKT--DCSPIQFESAWALTN  146 (529)
T ss_dssp             CHHHHHHHHTSS-------CHHHHHHHHHHHHHHHTSS-SCCCHHHHHHTTHHHHHHHHHTCT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCC-------CHHHHHHHHHHHHHHHcCC-CCchHHHHHHCCCHHHHHHHHcCC--CCHHHHHHHHHHHHH
Confidence            366777777776       8999999999999976542 344567889999999999999875  468899999999999


Q ss_pred             hhcCC-cchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-----H
Q 010533          203 LVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-----D  276 (508)
Q Consensus       203 l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-----~  276 (508)
                      ++.+. +.+..+++.|++|.|+.+|.  +++.++++.|+|+|++++..++.+|..+++.|++++|+.+|..+..     .
T Consensus       147 ia~~~~~~~~~vv~~Gaip~Lv~LL~--s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~  224 (529)
T 3tpo_A          147 IASGTSEQTKAVVDGGAIPAFISLLA--SPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG  224 (529)
T ss_dssp             HHTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHH
T ss_pred             HHcCCHHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHH
Confidence            98765 44578999999999999997  4589999999999999999999999999999999999999987543     5


Q ss_pred             HHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcC-hhhHhHHhhcCC
Q 010533          277 SIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DEICKSVAENGG  355 (508)
Q Consensus       277 ~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~-~e~~~~i~e~Gg  355 (508)
                      ++++++|+|.+++.+.++...+         ....|++|.|+.+|.+. +++++.++||+|++|+.. ++....+++.|+
T Consensus       225 ~~~~a~~~L~nl~~~~~~~~~~---------~~~~~~lp~L~~LL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~  294 (529)
T 3tpo_A          225 YLRNLTWTLSNLCRNKNPAPPL---------DAVEQILPTLVRLLHHN-DPEVLADSCWAISYLTDGPNERIEMVVKKGV  294 (529)
T ss_dssp             HHHHHHHHHHHHHCCCTTCCCH---------HHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHSSCHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHhcccchhhH---------HHHhhHHHHHHHHhcCC-cHHHHHHHHHHHHHhhhhhhhhHHHHHhccc
Confidence            7889999999999877554321         12347899999999864 688999999999999984 566778889999


Q ss_pred             HHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChh
Q 010533          356 IDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPE  434 (508)
Q Consensus       356 i~~Lv~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~  434 (508)
                      ++.|+.+|.+.    +..++..++.+|++|+ +++..+..+++.|+++.|+.+|.  +.++.+++.|||+|+||+.++++
T Consensus       295 i~~Lv~lL~~~----~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~--~~~~~i~~~a~~aL~nl~~~~~~  368 (529)
T 3tpo_A          295 VPQLVKLLGAT----ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT--NPKTNIQKEATWTMSNITAGRQD  368 (529)
T ss_dssp             HHHHHHHHTCS----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTT--CSSHHHHHHHHHHHHHHHTSCHH
T ss_pred             hHHHHHHhcCC----ChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHc--CCCHHHHHHHHHHHHHHhcccHH
Confidence            99999999853    3489999999999997 47788999999999999999998  67899999999999999999999


Q ss_pred             hHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhh-cCccchHHHHhccc
Q 010533          435 NAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA-RNPENSFCSVMVSR  488 (508)
Q Consensus       435 ~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~-~~~e~~~~~~~~g~  488 (508)
                      +...+++.|+++.|+.+|..  ++..+++.|||+|.|++. .+++++.++++.|.
T Consensus       369 ~~~~v~~~g~i~~Lv~lL~~--~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~  421 (529)
T 3tpo_A          369 QIQQVVNHGLVPFLVGVLSK--ADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGI  421 (529)
T ss_dssp             HHHHHHHTTHHHHHHHHHHS--SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTC
T ss_pred             HHHHHHhcCcHHHHHHHhcC--CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcC
Confidence            99999999999999999975  468999999999999987 47889999999884

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=2.6e-34  Score=320.55  Aligned_cols=438  Identities=11%  Similarity=0.097  Sum_probs=327.7

Q ss_pred             cCCchhhhhhhhhhccc-CCCCC--------CCCCCcCCCcccccccCCccCCCCcchhhhhhHHHHHHHHHHHHhhcCC
Q 010533           12 FSNSEQIDFQKQSSLIT-LPQPR--------AHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDLGM   82 (508)
Q Consensus        12 ~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isQetfd~~v~eni~~~~m   82 (508)
                      .+++.+.-+.+.+.|+. .|-||        ..|+||.+++.+... +...|..+.+   -+..-.-+..++..+-+.+.
T Consensus       257 ~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~-~~~~q~~A~~---al~~aa~~~~~R~~I~~~gv  332 (810)
T 3now_A          257 LAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTD-DELQQRVACE---CLIAASSKKDKAKALCEQGV  332 (810)
T ss_dssp             SSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSS-CHHHHHHHHH---HHHHHTTSHHHHHTTHHHHH
T ss_pred             ccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCC-CHHHHHHHHH---HHHHHcCCcHHHHHHHHcCc
Confidence            45666777777777766 34455        669999999888654 3333333221   11111222223333222211


Q ss_pred             --------ChhHHHHHHHHHHhhccccCCCcccc---CCCCCCCCCChHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHH
Q 010533           83 --------EPTEALQDAIQTLSLQGVDLSGIVKC---VPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFD  151 (508)
Q Consensus        83 --------~p~eal~~aI~q~~~qgvdLs~i~~~---~~~~~~~~~~~v~~~l~~L~~~l~~~~~~~~~~~~~~~~~al~  151 (508)
                              +.+..    |+.|..-  .|.++...   .+.....+...+...++.++..+.+..     .|.+....+++
T Consensus       333 ~~L~~Ll~s~~~~----vr~~Al~--~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~-----~d~~v~~~Ave  401 (810)
T 3now_A          333 DILKRLYHSKNDG----IRVRALV--GLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPG-----KDKDIRRWAAD  401 (810)
T ss_dssp             HHHHHHTTCSCHH----HHHHHHH--HHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSS-----CCSSHHHHHHH
T ss_pred             HHHHHHHcCCCHH----HHHHHHH--HHHHhccccccCccccchhhccHHHHHHHHHHHhcCCC-----CCHHHHHHHHH
Confidence                    12211    1222111  12222111   111111122334556777888777631     15778899999


Q ss_pred             HHHHHhCCCCChhhHHHHH-HCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcc---------------------
Q 010533          152 KLIELCGGNEGSVNAAVAT-KNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS---------------------  209 (508)
Q Consensus       152 ~L~~lc~~~~~~~~r~~i~-~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~---------------------  209 (508)
                      .|..++.   ++..|..++ +.|++|.||.+|++   ++..++..|+++|.+++.+.+.                     
T Consensus       402 aLayLS~---~~~vk~~lv~d~g~Ip~LV~LL~s---~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~  475 (810)
T 3now_A          402 GLAYLTL---DAECKEKLIEDKASIHALMDLARG---GNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEE  475 (810)
T ss_dssp             HHHHHTT---SHHHHHHHHHCHHHHHHHHHHHHT---TCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCS
T ss_pred             HHHHHhC---CcHHHHHHHHccchHHHHHHHhCC---CChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccc
Confidence            9999998   455555555 58999999999997   4788999999999999975421                     


Q ss_pred             ---------h---hHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHH
Q 010533          210 ---------T---ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDS  277 (508)
Q Consensus       210 ---------~---~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~  277 (508)
                               +   ..+++.|++|.|+.+|++  +++.+++.++|+|++++. ++++|..+++.|++++|+.+|++++...
T Consensus       476 ~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s--~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~  552 (810)
T 3now_A          476 HELDDVDFINKRITVLANEGITTALCALAKT--ESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKG  552 (810)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC--CCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred             cccccHHHHHHHHHHHHHCcCHHHHHHHHcC--CCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHH
Confidence                     1   567889999999999984  579999999999999974 6779999999999999999999988788


Q ss_pred             HHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcC-hhhHhHHhhcCCH
Q 010533          278 IQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DEICKSVAENGGI  356 (508)
Q Consensus       278 ~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~-~e~~~~i~e~Ggi  356 (508)
                      +++|+|+|.+|+...++...|+.     ..  ..|++++|+++|....+.....+++++|.||+.. +++++.|++.||+
T Consensus       553 k~~Aa~AL~nL~~~~~p~~~~~~-----~~--~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l  625 (810)
T 3now_A          553 KRHATQALARIGITINPEVSFSG-----QR--SLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGV  625 (810)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHTTT-----HH--HHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHhcCCChhhhhcc-----hh--hhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCH
Confidence            99999999999976555443321     01  1369999999997543334457899999999985 6889999999999


Q ss_pred             HHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHh-CCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhh
Q 010533          357 DALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIE-NGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPEN  435 (508)
Q Consensus       357 ~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~-~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~  435 (508)
                      +.|+.+|.+..    ..++++|+++|+||+.+++.+..+++ .|+++.|+.++.  +.+..+++.|||+|++|+.+++++
T Consensus       626 ~~Lv~LL~s~~----~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~--s~d~~vq~~Aa~ALanLt~~s~~~  699 (810)
T 3now_A          626 SKIEYYLMEDH----LYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCE--DEDEETATACAGALAIITSVSVKC  699 (810)
T ss_dssp             HHHHHHHHSCC----TTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGG--CSSHHHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHcCCC----HHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhc--CCCHHHHHHHHHHHHHHhCCCHHH
Confidence            99999998642    27999999999999998888888885 789999999998  678999999999999999888999


Q ss_pred             HHHHHh-cCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHhccc
Q 010533          436 AARAME-AGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMVSR  488 (508)
Q Consensus       436 ~~~i~~-~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~g~  488 (508)
                      ++.+++ .|+++.|+++|..  ++..+|+.|+|+|.|++..++++...+++.|+
T Consensus       700 ~~~ii~~~g~I~~Lv~LL~s--~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~  751 (810)
T 3now_A          700 CEKILAIASWLDILHTLIAN--PSPAVQHRGIVIILNMINAGEEIAKKLFETDI  751 (810)
T ss_dssp             HHHHHTSTTHHHHHHHHHTC--SSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTH
T ss_pred             HHHHHHHcCCHHHHHHHHCC--CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCC
Confidence            999999 8999999999963  67899999999999999888999999999985

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=3.3e-34  Score=310.07  Aligned_cols=353  Identities=12%  Similarity=0.078  Sum_probs=285.9

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHH
Q 010533          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (508)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~  202 (508)
                      +|..|...|.+.       +.+.+..|++.|++++.. .++++|..+++.|+||.|+.+|++.  .+.+++..+.++|.+
T Consensus        91 ~Ip~LV~LL~s~-------~~~vq~~Aa~AL~nLa~~-~~~~nk~~I~~~GaIp~LV~LL~s~--~~~~~~e~aa~aL~n  160 (584)
T 3l6x_A           91 GIPVLVGLLDHP-------KKEVHLGACGALKNISFG-RDQDNKIAIKNCDGVPALVRLLRKA--RDMDLTEVITGTLWN  160 (584)
T ss_dssp             HHHHHHHGGGCS-------SHHHHHHHHHHHHHHTSS-SCHHHHHHHHHTTHHHHHHHHHHHC--CSHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHCCC-------CHHHHHHHHHHHHHHHcc-CCHHHHHHHHHcCCHHHHHHHHcCC--CCHHHHHHHHHHHHH
Confidence            578899998876       789999999999999973 1589999999999999999999975  367788888888888


Q ss_pred             hhcCCcchhHHHhcCChHHHHHHHh----------------cCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHc-CcHHH
Q 010533          203 LVHDVQSTETFRTGGGPKLLVNILI----------------DGNEDPEILNSGFAVVAASATGNEVVKESYMEL-KIDEL  265 (508)
Q Consensus       203 l~~~~~~~~~i~~~ggi~~Lv~lL~----------------~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~-G~i~~  265 (508)
                      |+...+.+..++. +|++.|+++|.                ++..+.++++.++++|++++..++++|+.+++. |+++.
T Consensus       161 LS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~  239 (584)
T 3l6x_A          161 LSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDA  239 (584)
T ss_dssp             HTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHH
T ss_pred             HhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHH
Confidence            8876677888885 68999999872                123468999999999999998888889999986 56789


Q ss_pred             HHHHHhc------CChHHHHHHHHHHHHhcCCCcchhh----h------------hhcchHHHHHHhcCCHHHHHHHHhc
Q 010533          266 ILEILSR------QRNDSIQSLYDAIRVLLTPDDDQVV----A------------SQVYGYARRFAKIGIARALVHSLHA  323 (508)
Q Consensus       266 Lv~lL~~------~~~~~~~~A~~aL~~L~~~dd~r~~----~------------~~a~~~~~~i~~~g~i~~Lv~lL~~  323 (508)
                      |+.+|++      .+...+++++|+|+||+..-+..++    +            .....-...+.+.++++.|+.+|+.
T Consensus       240 LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~  319 (584)
T 3l6x_A          240 LIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKE  319 (584)
T ss_dssp             HHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHcc
Confidence            9999985      2347899999999999965211110    0            0001111222334567889999987


Q ss_pred             CCChhHHHHHHHHHHHhhcCh-----hhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhC
Q 010533          324 GLSSPSLISASIALKAVAVND-----EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIEN  398 (508)
Q Consensus       324 ~~d~~~~~~a~~aL~~La~~~-----e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~  398 (508)
                      +.++.+++++++||++|+..+     .+...|.+.||++.|+++|...    +..+++.++++|+||+.++.++..| +.
T Consensus       320 s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~----~~~v~~~A~~aL~nLs~~~~~~~~I-~~  394 (584)
T 3l6x_A          320 SKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNE----HERVVKAASGALRNLAVDARNKELI-GK  394 (584)
T ss_dssp             CCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCS----CHHHHHHHHHHHHHHHTTCSCHHHH-HH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCC----CHHHHHHHHHHHHHHhCChhHHHHH-Hh
Confidence            667889999999999998643     3334566789999999999863    2489999999999999988898876 67


Q ss_pred             CcHHHHHHHHhccCC------CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 010533          399 GGMDKLIVVSARFSD------DASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNL  472 (508)
Q Consensus       399 Ggl~~Lv~lL~~~~~------~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL  472 (508)
                      |++|.||++|.....      +..++..+|++|.||+.+++++++.|++.|+++.|+++++.++..+.+++.|||+|+||
T Consensus       395 g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl  474 (584)
T 3l6x_A          395 HAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTI  474 (584)
T ss_dssp             HHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence            999999999973211      46889999999999999999999999999999999999987545789999999999999


Q ss_pred             hhcCccchHHHHhccccccH
Q 010533          473 VARNPENSFCSVMVSRNLSD  492 (508)
Q Consensus       473 ~~~~~e~~~~~~~~g~~~~~  492 (508)
                      .. +.+++..|-++|...++
T Consensus       475 ~~-~~elr~~~kk~G~~~~~  493 (584)
T 3l6x_A          475 WG-YKELRKPLEKEGWKKSD  493 (584)
T ss_dssp             HT-SHHHHHHHHTTTCCGGG
T ss_pred             Hc-CHHHHHHHHHcCCCHHH
Confidence            86 69999999999965443

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=2.9e-34  Score=294.79  Aligned_cols=280  Identities=14%  Similarity=0.177  Sum_probs=241.6

Q ss_pred             CHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcC---------CCCHHHHHHHHHHHHHhhcCChhhHHHHHH
Q 010533          189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDG---------NEDPEILNSGFAVVAASATGNEVVKESYME  259 (508)
Q Consensus       189 ~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~---------~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~  259 (508)
                      ....++.|+++|..++.+.+.|..+++.||++.|+.+|...         ..+..++..|+++|.++|..++.+|..+..
T Consensus        45 ~~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~  124 (354)
T 3nmw_A           45 VEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS  124 (354)
T ss_dssp             GGGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            44667789999999998878899999999999999999521         124679999999999999888889988875


Q ss_pred             c-CcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHH
Q 010533          260 L-KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALK  338 (508)
Q Consensus       260 ~-G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~  338 (508)
                      . |+||.|+.+|++++.++++.|+|+|++|+..++.        ++...+++.|+|++|+++|.+..+..+++.++++|+
T Consensus       125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~--------~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~  196 (354)
T 3nmw_A          125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADV--------NSKKTLREVGSVKALMECALEVKKESTLKSVLSALW  196 (354)
T ss_dssp             CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCH--------HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCH--------HHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            5 5599999999988889999999999999975321        244567799999999998765556789999999999


Q ss_pred             Hhhc-ChhhHhHHh-hcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh----CCchhHHHHHhCCcHHHHHHHHhccC
Q 010533          339 AVAV-NDEICKSVA-ENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA----GSDSNKSAIIENGGMDKLIVVSARFS  412 (508)
Q Consensus       339 ~La~-~~e~~~~i~-e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La----~~~~~k~~Iv~~Ggl~~Lv~lL~~~~  412 (508)
                      +|+. .++++..|+ +.|+++.|+++|....+..+.++++.++++|++|+    ++++++..|++.|++|.|+++|+  +
T Consensus       197 nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~--~  274 (354)
T 3nmw_A          197 NLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK--S  274 (354)
T ss_dssp             HHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTT--C
T ss_pred             HHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHc--C
Confidence            9999 778888888 79999999999986433211258999999999998    48999999999999999999998  6


Q ss_pred             CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccch
Q 010533          413 DDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENS  480 (508)
Q Consensus       413 ~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~  480 (508)
                      ++..++++|+++|+||+.+++++++.+++.|+++.|+++|+.  .+..+++.|+|+|+||+.++|+..
T Consensus       275 ~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s--~~~~i~~~A~~aL~nL~~~~~~~~  340 (354)
T 3nmw_A          275 HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS--KHKMIAMGSAAALRNLMANRPAKY  340 (354)
T ss_dssp             SCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTC--SSHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             CChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHcCCHHHH
Confidence            788999999999999998899999999999999999999954  578899999999999999877754

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=2.6e-33  Score=301.75  Aligned_cols=393  Identities=14%  Similarity=0.159  Sum_probs=316.2

Q ss_pred             hccCCchhhhhhhhhh----cccCCCCC-----CCCCCcCCCcccccccCCccCCCCcchhhhhhHHHHHHHHHHHHhhc
Q 010533           10 KHFSNSEQIDFQKQSS----LITLPQPR-----AHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDL   80 (508)
Q Consensus        10 ~~~~~~~~~~~~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isQetfd~~v~eni~~~   80 (508)
                      .-+|++++.|++++++    ||++++||     ..|.||.+|+||++.|++.+|++++.+=.-|.-.             
T Consensus        65 ~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~-------------  131 (510)
T 3ul1_B           65 GINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG-------------  131 (510)
T ss_dssp             HHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTS-------------
T ss_pred             HhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcC-------------
Confidence            4589999999999998    89999999     8899999999999999988888765322211100             


Q ss_pred             CCChhHHHHHHHHHHhhccccCCCccccCCCCCCCCCChHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCC
Q 010533           81 GMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGN  160 (508)
Q Consensus        81 ~m~p~eal~~aI~q~~~qgvdLs~i~~~~~~~~~~~~~~v~~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~  160 (508)
                          +.-.+.+|   -..                       +++..|...+.+.       +.+....|++.|.+++.. 
T Consensus       132 ----~~e~~~~v---v~~-----------------------GaIp~Lv~lL~s~-------~~~v~e~A~~aL~nLa~d-  173 (510)
T 3ul1_B          132 ----TSEQTKAV---VDG-----------------------GAIPAFISLLASP-------HAHISEQAVWALGNIAGD-  173 (510)
T ss_dssp             ----CHHHHHHH---HHT-----------------------THHHHHHHHTTCS-------CHHHHHHHHHHHHHHHTT-
T ss_pred             ----CHHHHHHH---HHC-----------------------CCHHHHHHHHcCC-------CHHHHHHHHHHHHHHHhC-
Confidence                01112222   011                       2467778887765       788889999999999987 


Q ss_pred             CChhhHHHHHHCCcHHHHHHHHhcccC--CCHHHHHHHHHHHHHhhcCCcchhHH-HhcCChHHHHHHHhcCCCCHHHHH
Q 010533          161 EGSVNAAVATKNGGVELVCSICYKMRC--GSKRVLDSCLKTMALLVHDVQSTETF-RTGGGPKLLVNILIDGNEDPEILN  237 (508)
Q Consensus       161 ~~~~~r~~i~~~Gavp~Lv~lL~~~~~--~~~~~~~~al~aLa~l~~~~~~~~~i-~~~ggi~~Lv~lL~~~~~~~~v~~  237 (508)
                       ++.+|..+.+.|++|.|+.+|.+.+.  ....++..+.+++++++.+......+ ...++++.|+++|.  +++.+++.
T Consensus       174 -~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~--~~~~~v~~  250 (510)
T 3ul1_B          174 -GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH--HNDPEVLA  250 (510)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTT--CSCHHHHH
T ss_pred             -CHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHh--cCCHHHHH
Confidence             89999999999999999999986531  12356778899999998766444444 34678999999997  46889999


Q ss_pred             HHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHH
Q 010533          238 SGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARAL  317 (508)
Q Consensus       238 ~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~L  317 (508)
                      .++++|++++..+++.++.+++.|+++.|+.+|.+.+..++..++++|.+|+..++         ++...+.+.|+++.|
T Consensus       251 ~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~---------~~~~~i~~~g~l~~L  321 (510)
T 3ul1_B          251 DSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD---------EQTQKVIDAGALAVF  321 (510)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH---------HHHHHHHHTTGGGGC
T ss_pred             HHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCH---------HHHHHHhhccchHHH
Confidence            99999999988887778888899999999999998887899999999999987664         245567789999999


Q ss_pred             HHHHhcCCChhHHHHHHHHHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh--CCchhHHH
Q 010533          318 VHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA--GSDSNKSA  394 (508)
Q Consensus       318 v~lL~~~~d~~~~~~a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La--~~~~~k~~  394 (508)
                      +.+|++. +..++..+||+|++|+. +.+.+..+.+.|+++.|+.+|.+.    +.+++++|+++|+||+  ++++....
T Consensus       322 ~~LL~~~-~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~----~~~v~~~Aa~aL~Nl~~~~~~~~~~~  396 (510)
T 3ul1_B          322 PSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA----DFKTQKEAAWAITNYTSGGTVEQIVY  396 (510)
T ss_dssp             C-CTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS----CHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             HHHhcCC-CHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC----CHHHHHHHHHHHHHHHccCCHHHHHH
Confidence            9999864 67899999999999987 567788899999999999999863    3489999999999997  36678888


Q ss_pred             HHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhc-----CC-hhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHH
Q 010533          395 IIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL-----RS-PENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFM  468 (508)
Q Consensus       395 Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~-----~~-~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~a  468 (508)
                      +++.|++++|+++|.  +.++.++..++.+|.+|..     ++ ...+..+.+.||++.|-. |+.|+ +..+.+.|...
T Consensus       397 L~~~g~i~~L~~LL~--~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~-Lq~~~-n~~i~~~A~~i  472 (510)
T 3ul1_B          397 LVHCGIIEPLMNLLS--AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEA-LQRHE-NESVYKASLNL  472 (510)
T ss_dssp             HHHTTCHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHH-GGGCS-SHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHH-HHcCC-CHHHHHHHHHH
Confidence            999999999999998  7789999999999999873     12 233556778899988754 55674 57888888888


Q ss_pred             HHHhhh
Q 010533          469 IRNLVA  474 (508)
Q Consensus       469 L~nL~~  474 (508)
                      |-..-.
T Consensus       473 ie~yf~  478 (510)
T 3ul1_B          473 IEKYFS  478 (510)
T ss_dssp             HHHHCC
T ss_pred             HHHHCC
Confidence            876543

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=6.6e-33  Score=299.88  Aligned_cols=335  Identities=10%  Similarity=0.082  Sum_probs=272.7

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHH
Q 010533          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (508)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~  202 (508)
                      .+..|...|.+.       +.+.+..|++.|+++|..  +.++|..+.+.|+||.||++|++   ++.+++..|+++|.+
T Consensus        49 ~i~~LV~~L~s~-------~~~~q~~Aa~~L~~La~~--~~~~k~~V~~~G~Ip~LV~LL~s---~~~~vq~~Aa~AL~n  116 (584)
T 3l6x_A           49 ELPEVIAMLGFR-------LDAVKSNAAAYLQHLCYR--NDKVKTDVRKLKGIPVLVGLLDH---PKKEVHLGACGALKN  116 (584)
T ss_dssp             CHHHHHHHTTCS-------CHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTHHHHHHHGGGC---SSHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHCCC-------CHHHHHHHHHHHHHHHcC--ChHHHHHHHHcCCcHHHHHHHCC---CCHHHHHHHHHHHHH
Confidence            377788888775       788889999999999987  89999999999999999999998   478999999999999


Q ss_pred             hhcC--CcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHh---------
Q 010533          203 LVHD--VQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILS---------  271 (508)
Q Consensus       203 l~~~--~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~---------  271 (508)
                      |+.+  .+++..+++.|||+.||++|.+. .+.++++.++++|++++. ++.+|..|++ |+++.|+++|.         
T Consensus       117 La~~~~~~nk~~I~~~GaIp~LV~LL~s~-~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~  193 (584)
T 3l6x_A          117 ISFGRDQDNKIAIKNCDGVPALVRLLRKA-RDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWERE  193 (584)
T ss_dssp             HTSSSCHHHHHHHHHTTHHHHHHHHHHHC-CSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC--
T ss_pred             HHccCCHHHHHHHHHcCCHHHHHHHHcCC-CCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhccccccccc
Confidence            9874  57789999999999999999863 468899999999999975 7889999996 57999999872         


Q ss_pred             --------c-CChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhc-CCHHHHHHHHhcC-----CChhHHHHHHHH
Q 010533          272 --------R-QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKI-GIARALVHSLHAG-----LSSPSLISASIA  336 (508)
Q Consensus       272 --------~-~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~-g~i~~Lv~lL~~~-----~d~~~~~~a~~a  336 (508)
                              . .+..++.+|+++|+||+.+++         ++.+.|++. |++++|+.+|++.     .+...+++++++
T Consensus       194 ~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~---------~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~a  264 (584)
T 3l6x_A          194 PNEDCKPRHIEWESVLTNTAGCLRNVSSERS---------EARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCL  264 (584)
T ss_dssp             --------CCCCHHHHHHHHHHHHHHTSSCH---------HHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHH
T ss_pred             ccccccccccccHHHHHHHHHHHHHHhcCCH---------HHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHH
Confidence                    1 123789999999999997653         234556665 5568999999853     345688999999


Q ss_pred             HHHhhcChhh--------------------------HhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCc-
Q 010533          337 LKAVAVNDEI--------------------------CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSD-  389 (508)
Q Consensus       337 L~~La~~~e~--------------------------~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~-  389 (508)
                      |+||+..-+.                          ...+.+.++++.|+.+|..+.   +..++++|+++|++|+.+. 
T Consensus       265 L~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~---~~~v~E~Aa~AL~nL~ag~~  341 (584)
T 3l6x_A          265 LRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESK---TPAILEASAGAIQNLCAGRW  341 (584)
T ss_dssp             HHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHSSCS
T ss_pred             HHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCC---CHHHHHHHHHHHHHHHcCCc
Confidence            9999975211                          112223345667889997642   3589999999999996432 


Q ss_pred             ----hhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCC------cH
Q 010533          390 ----SNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPN------AQ  459 (508)
Q Consensus       390 ----~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~------~~  459 (508)
                          .++..|.+.||+|.|+++|.  ++++.+++.||++|.||+. ++.++..| +.|+++.||++|.....      ..
T Consensus       342 ~~~~~~~~~v~~~~glp~Lv~LL~--s~~~~v~~~A~~aL~nLs~-~~~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~  417 (584)
T 3l6x_A          342 TYGRYIRSALRQEKALSAIADLLT--NEHERVVKAASGALRNLAV-DARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSE  417 (584)
T ss_dssp             HHHHHHHHHHTSHHHHHHHHHGGG--CSCHHHHHHHHHHHHHHHT-TCSCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCH
T ss_pred             cccHHHHHHHHHcCcHHHHHHHHc--CCCHHHHHHHHHHHHHHhC-ChhHHHHH-HhCCHHHHHHHhcCCcccccccchH
Confidence                34455667899999999998  6789999999999999995 67777665 78999999999964321      35


Q ss_pred             HHHHHHHHHHHHhhhcCccchHHHHhccc
Q 010533          460 QLQRSSCFMIRNLVARNPENSFCSVMVSR  488 (508)
Q Consensus       460 ~vq~~A~~aL~nL~~~~~e~~~~~~~~g~  488 (508)
                      .++..||++|.|++.+++++++.+++.|+
T Consensus       418 ~v~~~a~~tL~NL~a~~~~~~~~I~~~g~  446 (584)
T 3l6x_A          418 DTVISILNTINEVIAENLEAAKKLRETQG  446 (584)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHCCC
Confidence            78889999999999999999999999985

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=1.6e-32  Score=291.73  Aligned_cols=333  Identities=13%  Similarity=0.136  Sum_probs=271.8

Q ss_pred             HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHh
Q 010533          124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL  203 (508)
Q Consensus       124 l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l  203 (508)
                      ++.|...+.+.       +.+.+..|++.|+++|..  ++.++..+.+.|+||.||.+|++   ++.+++..|+++|.++
T Consensus         4 l~~lv~~L~s~-------~~~~q~~A~~~L~~l~~~--~~~~~~~i~~~g~i~~Lv~lL~s---~~~~~~~~A~~aL~nL   71 (457)
T 1xm9_A            4 IPKAVQYLSSQ-------DEKYQAIGAYYIQHTCFQ--DESAKQQVYQLGGICKLVDLLRS---PNQNVQQAAAGALRNL   71 (457)
T ss_dssp             HHHHHHHHHSS-------CTHHHHHHHHHHHHHTSS--CSSHHHHHHHTTHHHHHHHHTTS---SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCC-------CHHHHHHHHHHHHHHHcC--ChHHHHHHHHcCCHHHHHHHHcC---CCHHHHHHHHHHHHHH
Confidence            56677777775       788899999999999986  77788899999999999999997   4788999999999999


Q ss_pred             hcC-CcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHh--------cC-
Q 010533          204 VHD-VQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILS--------RQ-  273 (508)
Q Consensus       204 ~~~-~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~--------~~-  273 (508)
                      +.+ .+.+..+++.||+|.|+++|.. +.+.++++.++|+|++++.. +.+|..+++ |+++.|+.+|.        +. 
T Consensus        72 a~~~~~~k~~i~~~G~i~~Lv~lL~~-~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~  148 (457)
T 1xm9_A           72 VFRSTTNKLETRRQNGIREAVSLLRR-TGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNS  148 (457)
T ss_dssp             HSSCHHHHHHHHHTTCHHHHHHHHTT-CCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC----
T ss_pred             hcCCHHHHHHHHHcCCHHHHHHHHhh-CCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCcc
Confidence            876 5678889999999999999973 34789999999999999876 789999999 99999999993        22 


Q ss_pred             -------ChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhc-CCHHHHHHHHhcC-----CChhHHHHHHHHHHHh
Q 010533          274 -------RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKI-GIARALVHSLHAG-----LSSPSLISASIALKAV  340 (508)
Q Consensus       274 -------~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~-g~i~~Lv~lL~~~-----~d~~~~~~a~~aL~~L  340 (508)
                             +..++++|+|+|+||+.++          ++.+.+.+. |++++|+.+|+++     .+..++.+++++|++|
T Consensus       149 ~~~~e~~~~~v~~~a~~aL~nLs~~~----------~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nL  218 (457)
T 1xm9_A          149 NMSREVVDPEVFFNATGCLRNLSSAD----------AGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNL  218 (457)
T ss_dssp             -----CCCHHHHHHHHHHHHHHTTSH----------HHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHH
T ss_pred             chhcccccHHHHHHHHHHHHHHccCH----------HHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhc
Confidence                   2257779999999999652          344566687 9999999999862     2445778888889988


Q ss_pred             hcC---------------------------------------------------hhhHhHHhhcCCHHHHHHHHhccCCC
Q 010533          341 AVN---------------------------------------------------DEICKSVAENGGIDALLRCIDDSGLQ  369 (508)
Q Consensus       341 a~~---------------------------------------------------~e~~~~i~e~Ggi~~Lv~lL~~~~~~  369 (508)
                      +..                                                   ++..+.+.+.|+++.|+.+|....  
T Consensus       219 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~--  296 (457)
T 1xm9_A          219 SYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSK--  296 (457)
T ss_dssp             TTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCC--
T ss_pred             ccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcC--
Confidence            631                                                   112245667888999999998742  


Q ss_pred             CcHHHHHHHHHHHHHhhC-Cch----h-HHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC
Q 010533          370 GNKTVARICCSLLSKLAG-SDS----N-KSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAG  443 (508)
Q Consensus       370 ~~~~v~~~al~aL~~La~-~~~----~-k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G  443 (508)
                       +..+++.|+++|.||+. +..    . +..|.+.||+|.|+++|.  +++..+++.|+++|.+|+. ++++...| ..|
T Consensus       297 -~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~--~~~~~v~~~A~~aL~nls~-~~~~~~~i-~~~  371 (457)
T 1xm9_A          297 -KDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQ--SGNSDVVRSGASLLSNMSR-HPLLHRVM-GNQ  371 (457)
T ss_dssp             -CHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTT--CSCHHHHHHHHHHHHHHHT-SGGGHHHH-HHH
T ss_pred             -CHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHh--CCCHhHHHHHHHHHHHHhc-CHHHHHHH-HHh
Confidence             34899999999999975 332    2 233446899999999998  6789999999999999995 67776655 568


Q ss_pred             cHHHHHHHHHcCCC----cHHHHHHHHHHHHHhhhcCccchHHHHhccc
Q 010533          444 SGDLAIQAMLKFPN----AQQLQRSSCFMIRNLVARNPENSFCSVMVSR  488 (508)
Q Consensus       444 ~i~~Lv~~L~~h~~----~~~vq~~A~~aL~nL~~~~~e~~~~~~~~g~  488 (508)
                      +++.|+++|.....    +..++..++++|.|++.+++++...+.+.|+
T Consensus       372 ~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~  420 (457)
T 1xm9_A          372 VFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSM  420 (457)
T ss_dssp             THHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHH
T ss_pred             hhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCC
Confidence            99999999975322    2468889999999999999999999998885

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=2.8e-32  Score=294.86  Aligned_cols=392  Identities=14%  Similarity=0.153  Sum_probs=315.9

Q ss_pred             hccCCchhhhhhhhhh----cccCCCCC-----CCCCCcCCCcccccccCCccCCCCcchhhhhhHHHHHHHHHHHHhhc
Q 010533           10 KHFSNSEQIDFQKQSS----LITLPQPR-----AHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDL   80 (508)
Q Consensus        10 ~~~~~~~~~~~~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isQetfd~~v~eni~~~   80 (508)
                      .-+|++++.|+++++.    ||++++||     ..|+||.+|.||.+.+++.+|++++.+-.-|+..+-           
T Consensus        84 ~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~-----------  152 (529)
T 3tpo_A           84 GINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS-----------  152 (529)
T ss_dssp             HHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCH-----------
T ss_pred             HhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCH-----------
Confidence            4589999999999998    79999999     789999999999999998888875532222211000           


Q ss_pred             CCChhHHHHHHHHHHhhccccCCCccccCCCCCCCCCChHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCC
Q 010533           81 GMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGN  160 (508)
Q Consensus        81 ~m~p~eal~~aI~q~~~qgvdLs~i~~~~~~~~~~~~~~v~~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~  160 (508)
                            -...+|   -..                       +++..|...+.+.       +.+....|++.|.+++.. 
T Consensus       153 ------~~~~~v---v~~-----------------------Gaip~Lv~LL~s~-------~~~v~e~A~~aL~nLa~~-  192 (529)
T 3tpo_A          153 ------EQTKAV---VDG-----------------------GAIPAFISLLASP-------HAHISEQAVWALGNIAGA-  192 (529)
T ss_dssp             ------HHHHHH---HHT-----------------------THHHHHHHHTTCS-------CHHHHHHHHHHHHHHHTT-
T ss_pred             ------HHHHHH---HHC-----------------------CCHHHHHHHHcCC-------CHHHHHHHHHHHHHHhcc-
Confidence                  011122   111                       2467778877775       788889999999999987 


Q ss_pred             CChhhHHHHHHCCcHHHHHHHHhcccC--CCHHHHHHHHHHHHHhhcCCcchhHH-HhcCChHHHHHHHhcCCCCHHHHH
Q 010533          161 EGSVNAAVATKNGGVELVCSICYKMRC--GSKRVLDSCLKTMALLVHDVQSTETF-RTGGGPKLLVNILIDGNEDPEILN  237 (508)
Q Consensus       161 ~~~~~r~~i~~~Gavp~Lv~lL~~~~~--~~~~~~~~al~aLa~l~~~~~~~~~i-~~~ggi~~Lv~lL~~~~~~~~v~~  237 (508)
                       ++.+|..+.+.|++|.|+.+|...+.  ....++..+.++|+.++.+..+...+ ...+++|.|+++|.  +++.+++.
T Consensus       193 -~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~--~~~~~v~~  269 (529)
T 3tpo_A          193 -GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH--HNDPEVLA  269 (529)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTT--SSCHHHHH
T ss_pred             -CHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhc--CCcHHHHH
Confidence             89999999999999999999986431  12356778899999998765444443 44688999999997  46899999


Q ss_pred             HHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHH
Q 010533          238 SGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARAL  317 (508)
Q Consensus       238 ~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~L  317 (508)
                      .++|+|++++..+++.++.+++.|+++.|+.+|.+.+..++..++++|.+|+..++         ++...+.+.|+++.|
T Consensus       270 ~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~---------~~~~~i~~~g~l~~L  340 (529)
T 3tpo_A          270 DSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD---------EQTQKVIDAGALAVF  340 (529)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH---------HHHHHHHHTTGGGGH
T ss_pred             HHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccch---------HHHHHHhhcccHHHH
Confidence            99999999998888888888999999999999998887899999999999987654         244567789999999


Q ss_pred             HHHHhcCCChhHHHHHHHHHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh--CCchhHHH
Q 010533          318 VHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA--GSDSNKSA  394 (508)
Q Consensus       318 v~lL~~~~d~~~~~~a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La--~~~~~k~~  394 (508)
                      +.+|++. ++.++..+||+|++|+. +++.+..+.+.|+++.|+.+|.+.    +.+++.+|+++|+||+  ++++....
T Consensus       341 ~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~----~~~v~~~A~~aL~nl~~~~~~~~~~~  415 (529)
T 3tpo_A          341 PSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA----DFKTQKAAAWAITNYTSGGTVEQIVY  415 (529)
T ss_dssp             HHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS----CHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC----CHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            9999864 67899999999999997 567788899999999999999864    3489999999999997  36678888


Q ss_pred             HHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhc-----CC-hhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHH
Q 010533          395 IIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL-----RS-PENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFM  468 (508)
Q Consensus       395 Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~-----~~-~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~a  468 (508)
                      +++.|++++|+++|.  +.++.++..++.+|.+|..     ++ +..+..+.+.||++.|-.+ ..|. +..|.+.|...
T Consensus       416 l~~~g~i~~L~~LL~--~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~L-q~~~-n~~i~~~A~~i  491 (529)
T 3tpo_A          416 LVHCGIIEPLMNLLS--AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL-QRHE-NESVYKASLNL  491 (529)
T ss_dssp             HHHTTCHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGG-GGCS-SHHHHHHHHHH
T ss_pred             HHHCcCHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHH-HcCC-CHHHHHHHHHH
Confidence            999999999999998  7789999999999999863     22 2345567789999987554 5674 67888888888


Q ss_pred             HHHhh
Q 010533          469 IRNLV  473 (508)
Q Consensus       469 L~nL~  473 (508)
                      |-..-
T Consensus       492 ie~yf  496 (529)
T 3tpo_A          492 IEKYF  496 (529)
T ss_dssp             HHHHC
T ss_pred             HHHHC
Confidence            86643

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=1.3e-30  Score=280.74  Aligned_cols=336  Identities=12%  Similarity=0.096  Sum_probs=288.1

Q ss_pred             HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHH
Q 010533          122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA  201 (508)
Q Consensus       122 ~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa  201 (508)
                      ..+..|...+.+.       |.+....|++.|+++++. ...+++..+.+.|++|.|+.+|++.  ++.+++..|+++|.
T Consensus        74 ~~l~~lv~~L~s~-------~~~~~~~A~~~L~~l~s~-~~~~~~~~~~~~g~v~~Lv~lL~~~--~~~~v~~~A~~~L~  143 (528)
T 4b8j_A           74 ESLPAMIGGVYSD-------DNNLQLEATTQFRKLLSI-ERSPPIEEVIQSGVVPRFVQFLTRE--DFPQLQFEAAWALT  143 (528)
T ss_dssp             -CHHHHHHHHTSS-------CHHHHHHHHHHHHHHHTC-SSSCCHHHHHHTTCHHHHHHHHTCT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCC-------CHHHHHHHHHHHHHHhcC-CCCchHHHHHHCCCHHHHHHHhCCC--CCHHHHHHHHHHHH
Confidence            3477778887765       788899999999999775 1336777889999999999999874  24889999999999


Q ss_pred             HhhcCC-cchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhc-CChHHHH
Q 010533          202 LLVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSR-QRNDSIQ  279 (508)
Q Consensus       202 ~l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~-~~~~~~~  279 (508)
                      .++.+. +.+..+++.|+++.|+.+|.+  ++..++..++++|++++..++.+|..+.+.|+++.|+.+|.. .+..++.
T Consensus       144 ~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~  221 (528)
T 4b8j_A          144 NIASGTSENTKVVIDHGAVPIFVKLLGS--SSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLR  221 (528)
T ss_dssp             HHHTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHH
T ss_pred             HHhCCCHHHHHHHHhCCcHHHHHHHhcC--CCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHH
Confidence            998864 556788899999999999985  589999999999999998889999999999999999999954 4558899


Q ss_pred             HHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcCh-hhHhHHhhcCCHHH
Q 010533          280 SLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVND-EICKSVAENGGIDA  358 (508)
Q Consensus       280 ~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~-e~~~~i~e~Ggi~~  358 (508)
                      +++|+|.+|+.......          .....|+++.|+.+|.+. ++.++..++++|++|+..+ +..+.+++.|+++.
T Consensus       222 ~a~~~L~~L~~~~~~~~----------~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~  290 (528)
T 4b8j_A          222 NATWTLSNFCRGKPQPS----------FEQTRPALPALARLIHSN-DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR  290 (528)
T ss_dssp             HHHHHHHHHHCSSSCCC----------HHHHTTHHHHHHHHTTCC-CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHcCCCCCc----------HHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHH
Confidence            99999999997642211          233469999999999764 7889999999999999854 45678889999999


Q ss_pred             HHHHHhccCCCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhccCC-CHHHHHHHHHHHHHHhcCChhhH
Q 010533          359 LLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSD-DASVLQEVMSIITVLSLRSPENA  436 (508)
Q Consensus       359 Lv~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~~-~~~v~e~a~~aL~~La~~~~~~~  436 (508)
                      |+.+|.+.    +..++..|+.+|++|+. ++.....+++.|+++.|+.+|.  .. ++.+++.||++|.+|+.++++..
T Consensus       291 Lv~lL~~~----~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~~v~~~A~~~L~nl~~~~~~~~  364 (528)
T 4b8j_A          291 LVELLLHP----SPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLT--QNLKKSIKKEACWTISNITAGNKDQI  364 (528)
T ss_dssp             HHHHTTCS----CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHH--SCCCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHcCC----ChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHc--CCCcHHHHHHHHHHHHHHHCCCHHHH
Confidence            99999864    34899999999999986 6778888999999999999998  55 89999999999999998899999


Q ss_pred             HHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhc-CccchHHHHhccc
Q 010533          437 ARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR-NPENSFCSVMVSR  488 (508)
Q Consensus       437 ~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~-~~e~~~~~~~~g~  488 (508)
                      ..+++.|+++.|+++|...  +..+++.|+|+|.|++.. +++++.++++.|.
T Consensus       365 ~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~  415 (528)
T 4b8j_A          365 QAVINAGIIGPLVNLLQTA--EFDIKKEAAWAISNATSGGSHDQIKYLVSEGC  415 (528)
T ss_dssp             HHHHHTTCHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTC
T ss_pred             HHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCC
Confidence            9999999999999999764  689999999999999986 7899999887763

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=1.8e-31  Score=283.66  Aligned_cols=339  Identities=12%  Similarity=0.128  Sum_probs=273.1

Q ss_pred             HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHH
Q 010533          122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA  201 (508)
Q Consensus       122 ~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa  201 (508)
                      +++..|...+.+.       +.+.+..|++.|++++..  ++++|..+++.|+||.|+++|+..  ++.+++..|.++|.
T Consensus        44 g~i~~Lv~lL~s~-------~~~~~~~A~~aL~nLa~~--~~~~k~~i~~~G~i~~Lv~lL~~~--~~~~~~~~a~~aL~  112 (457)
T 1xm9_A           44 GGICKLVDLLRSP-------NQNVQQAAAGALRNLVFR--STTNKLETRRQNGIREAVSLLRRT--GNAEIQKQLTGLLW  112 (457)
T ss_dssp             THHHHHHHHTTSS-------CHHHHHHHHHHHHHHHSS--CHHHHHHHHHTTCHHHHHHHHTTC--CCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHcCC-------CHHHHHHHHHHHHHHhcC--CHHHHHHHHHcCCHHHHHHHHhhC--CCHHHHHHHHHHHH
Confidence            4788899998775       788899999999999986  799999999999999999999832  47899999999999


Q ss_pred             HhhcCCcchhHHHhcCChHHHHHHHhc--------CC------CCHHHHHHHHHHHHHhhcCChhhHHHHHHc-CcHHHH
Q 010533          202 LLVHDVQSTETFRTGGGPKLLVNILID--------GN------EDPEILNSGFAVVAASATGNEVVKESYMEL-KIDELI  266 (508)
Q Consensus       202 ~l~~~~~~~~~i~~~ggi~~Lv~lL~~--------~~------~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~-G~i~~L  266 (508)
                      +++.+.+.|..+++ |++|.|+++|..        ..      .+.+++..++|+|+++|.. +++|+.+++. |+++.|
T Consensus       113 nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~L  190 (457)
T 1xm9_A          113 NLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSL  190 (457)
T ss_dssp             HHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHH
T ss_pred             HHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHH
Confidence            99987777888999 999999999931        11      3567888999999999876 8899999998 999999


Q ss_pred             HHHHhc------CChHHHHHHHHHHHHhcCCCcchh----------------------hhhh------------------
Q 010533          267 LEILSR------QRNDSIQSLYDAIRVLLTPDDDQV----------------------VASQ------------------  300 (508)
Q Consensus       267 v~lL~~------~~~~~~~~A~~aL~~L~~~dd~r~----------------------~~~~------------------  300 (508)
                      +.+|++      .+..++.+++++|++|+..-+...                      -|+.                  
T Consensus       191 v~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (457)
T 1xm9_A          191 MAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEE  270 (457)
T ss_dssp             HHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCC
T ss_pred             HHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccc
Confidence            999986      234678889999999974210000                      0000                  


Q ss_pred             -cchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcCh-h----hHhH-HhhcCCHHHHHHHHhccCCCCcHH
Q 010533          301 -VYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVND-E----ICKS-VAENGGIDALLRCIDDSGLQGNKT  373 (508)
Q Consensus       301 -a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~-e----~~~~-i~e~Ggi~~Lv~lL~~~~~~~~~~  373 (508)
                       ..+..+.+.+.|+++.|+.+|+...++.+++.++|+|++|+..+ .    ..+. |.+.||++.|+++|.+.    +.+
T Consensus       271 ~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~----~~~  346 (457)
T 1xm9_A          271 TNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG----NSD  346 (457)
T ss_dssp             SSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS----CHH
T ss_pred             cCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCC----CHh
Confidence             00112234456789999999998777889999999999999743 2    2133 44789999999999864    348


Q ss_pred             HHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCC----CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHH
Q 010533          374 VARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSD----DASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAI  449 (508)
Q Consensus       374 v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~----~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv  449 (508)
                      ++++|+++|++|+.++.++..|. .|++|+|+++|.....    ++.++..++++|.+|..++++++..+.+.||++.|+
T Consensus       347 v~~~A~~aL~nls~~~~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~  425 (457)
T 1xm9_A          347 VVRSGASLLSNMSRHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNII  425 (457)
T ss_dssp             HHHHHHHHHHHHHTSGGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHH-HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHH
Confidence            99999999999999888887765 5899999999983211    247889999999999989999999999999999999


Q ss_pred             HHHHcCCCcHHHHHHHHHHHHHhhhcCccch
Q 010533          450 QAMLKFPNAQQLQRSSCFMIRNLVARNPENS  480 (508)
Q Consensus       450 ~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~  480 (508)
                      +++.. ..+..+.+.|+|.|.|+..+ .+.|
T Consensus       426 ~L~~~-~~~~~i~~~A~~~L~~~~~~-~~l~  454 (457)
T 1xm9_A          426 NLCRS-SASPKAAEAARLLLSDMWSS-KELQ  454 (457)
T ss_dssp             HHHHC-TTCHHHHHHHHHHHHTTSSS-TTCS
T ss_pred             HHHcC-CCcHHHHHHHHHHHHHHHcc-hhhh
Confidence            99974 33678999999999999764 4444

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=9.9e-32  Score=275.95  Aligned_cols=278  Identities=15%  Similarity=0.127  Sum_probs=235.9

Q ss_pred             hhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcc--------cCCCHHHHHHHHHHHHHhhcCCc-ch
Q 010533          140 DEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKM--------RCGSKRVLDSCLKTMALLVHDVQ-ST  210 (508)
Q Consensus       140 ~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~--------~~~~~~~~~~al~aLa~l~~~~~-~~  210 (508)
                      ..+...+.+|++.|.+++.   ++++|..+.+.|++|.|+.+|.+.        +..+.+++..|.++|.+++.+.+ .+
T Consensus        43 ~~~~~~~~~A~~aL~nls~---d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k  119 (354)
T 3nmw_A           43 APVEHQICPAVCVLMKLSF---DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANK  119 (354)
T ss_dssp             CGGGGTHHHHHHHHHHHHT---SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHH
T ss_pred             CcchHHHHHHHHHHHHHcC---CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            3456777899999999997   689999999999999999999632        00235789999999999997654 55


Q ss_pred             hHHHhcCC-hHHHHHHHhcCCCCHHHHHHHHHHHHHhhcC-ChhhHHHHHHcCcHHHHHHHHh-cCChHHHHHHHHHHHH
Q 010533          211 ETFRTGGG-PKLLVNILIDGNEDPEILNSGFAVVAASATG-NEVVKESYMELKIDELILEILS-RQRNDSIQSLYDAIRV  287 (508)
Q Consensus       211 ~~i~~~gg-i~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~-~e~nr~~i~~~G~i~~Lv~lL~-~~~~~~~~~A~~aL~~  287 (508)
                      ..+...+| +|.|+++|.  +++.++++.++++|++++.. ++.+|..+++.|+|+.|+++|. +++.++++.|+++|++
T Consensus       120 ~~i~~~~GaIp~LV~LL~--s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~n  197 (354)
T 3nmw_A          120 ATLCSMKGCMRALVAQLK--SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWN  197 (354)
T ss_dssp             HHHHHCHHHHHHHHHGGG--CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCcHHHHHHHHC--CCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            66666655 999999998  46899999999999999874 6789999999999999999864 4556888999999999


Q ss_pred             hcCCCcchhhhhhcchHHHHHH-hcCCHHHHHHHHhcCCCh---hHHHHHHHHHHHhhc----ChhhHhHHhhcCCHHHH
Q 010533          288 LLTPDDDQVVASQVYGYARRFA-KIGIARALVHSLHAGLSS---PSLISASIALKAVAV----NDEICKSVAENGGIDAL  359 (508)
Q Consensus       288 L~~~dd~r~~~~~a~~~~~~i~-~~g~i~~Lv~lL~~~~d~---~~~~~a~~aL~~La~----~~e~~~~i~e~Ggi~~L  359 (508)
                      |+...+         ++...|+ ..|+|++|+++|+...+.   +++++++++|++|+.    ++++++.+.+.|+++.|
T Consensus       198 Ls~~~~---------~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~L  268 (354)
T 3nmw_A          198 LSAHCT---------ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTL  268 (354)
T ss_dssp             HHTTCH---------HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHH
T ss_pred             HHccCh---------hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHH
Confidence            997331         2334676 689999999999876543   589999999999995    88999999999999999


Q ss_pred             HHHHhccCCCCcHHHHHHHHHHHHHhh-CCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHH
Q 010533          360 LRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAA  437 (508)
Q Consensus       360 v~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~  437 (508)
                      +.+|.+.    +..++++|+++|++|+ ++++++..|++.|++|+|+++|+  ++++.+++.|+++|.+|+.++|+..+
T Consensus       269 v~lL~~~----~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~--s~~~~i~~~A~~aL~nL~~~~~~~~~  341 (354)
T 3nmw_A          269 LQHLKSH----SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH--SKHKMIAMGSAAALRNLMANRPAKYK  341 (354)
T ss_dssp             HHHTTCS----CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTT--CSSHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred             HHHHcCC----ChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHh--CCCHHHHHHHHHHHHHHHcCCHHHHh
Confidence            9999863    3489999999999999 58899999999999999999998  77899999999999999988877543

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.98  E-value=5.5e-31  Score=293.78  Aligned_cols=335  Identities=12%  Similarity=0.077  Sum_probs=267.5

Q ss_pred             HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhccc---------------
Q 010533          122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMR---------------  186 (508)
Q Consensus       122 ~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~---------------  186 (508)
                      ++++.|...+.+.       +...+..|++.|...|.   ++.+|..+.+.|+ |.|+.++++.+               
T Consensus       290 G~v~~li~Ll~s~-------~~~~q~~A~~al~~aa~---~~~~R~~I~~~gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~  358 (810)
T 3now_A          290 GILQMILAMATTD-------DELQQRVACECLIAASS---KKDKAKALCEQGV-DILKRLYHSKNDGIRVRALVGLCKLG  358 (810)
T ss_dssp             THHHHHHHHHHSS-------CHHHHHHHHHHHHHHTT---SHHHHHTTHHHHH-HHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHhCCC-------CHHHHHHHHHHHHHHcC---CcHHHHHHHHcCc-HHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence            4677788877775       67777788888888776   5778888887764 77777764321               


Q ss_pred             ------C-------------------------CCHHHHHHHHHHHHHhhcCCcchhHHH-hcCChHHHHHHHhcCCCCHH
Q 010533          187 ------C-------------------------GSKRVLDSCLKTMALLVHDVQSTETFR-TGGGPKLLVNILIDGNEDPE  234 (508)
Q Consensus       187 ------~-------------------------~~~~~~~~al~aLa~l~~~~~~~~~i~-~~ggi~~Lv~lL~~~~~~~~  234 (508)
                            .                         .|.+++.+|+++|++|+.+.+.+..++ +.|++|.||++|++  ++..
T Consensus       359 s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s--~d~~  436 (810)
T 3now_A          359 SYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARG--GNQS  436 (810)
T ss_dssp             TTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHT--TCGG
T ss_pred             cccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCC--CChH
Confidence                  0                         034456677777777776666666676 46899999999984  5789


Q ss_pred             HHHHHHHHHHHhhcCCh-----------------------------hhH---HHHHHcCcHHHHHHHHhcCChHHHHHHH
Q 010533          235 ILNSGFAVVAASATGNE-----------------------------VVK---ESYMELKIDELILEILSRQRNDSIQSLY  282 (508)
Q Consensus       235 v~~~a~~~L~~l~~~~e-----------------------------~nr---~~i~~~G~i~~Lv~lL~~~~~~~~~~A~  282 (508)
                      ++..++++|.|++...+                             .++   +.++++|++|+|+.+|+++++.+++.|+
T Consensus       437 i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa  516 (810)
T 3now_A          437 CLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIA  516 (810)
T ss_dssp             GHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHH
Confidence            99999999999987542                             234   6788999999999999998889999999


Q ss_pred             HHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHH---hhcCCHHHH
Q 010533          283 DAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSV---AENGGIDAL  359 (508)
Q Consensus       283 ~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i---~e~Ggi~~L  359 (508)
                      |+|.||+.+++          +...+++.|++|+|+.+|+++ +...+..++|||++|+...+....+   ...|++++|
T Consensus       517 ~aL~NLA~d~~----------~r~~Vv~~Gaip~Lv~LL~s~-~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppL  585 (810)
T 3now_A          517 RVLNAVCGLKE----------LRGKVVQEGGVKALLRMALEG-TEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPL  585 (810)
T ss_dssp             HHHHHHHTSHH----------HHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHH
T ss_pred             HHHHHHcCCHH----------HHHHHHHCCCHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHH
Confidence            99999996543          345677999999999999986 4668999999999998632222211   124699999


Q ss_pred             HHHHhccCCCCcHHHHHHHHHHHHHhhCC-chhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 010533          360 LRCIDDSGLQGNKTVARICCSLLSKLAGS-DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAAR  438 (508)
Q Consensus       360 v~lL~~~~~~~~~~v~~~al~aL~~La~~-~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~  438 (508)
                      +.+|...  . +.....+|+++|.||+.. ++++..|+++||++.|+.+|.  ++++.+++.|+++|+||+. +++.+..
T Consensus       586 v~LL~~~--~-~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~--s~~~~Vq~~A~~~L~NLa~-~~~~~~~  659 (810)
T 3now_A          586 LNLLQQD--C-TALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLM--EDHLYLTRAAAQCLCNLVM-SEDVIKM  659 (810)
T ss_dssp             HHTTSTT--S-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH--SCCTTHHHHHHHHHHHHTT-SHHHHHH
T ss_pred             HHHhCCC--C-cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhC-ChHHHHH
Confidence            9999742  1 123456899999999975 689999999999999999998  5678999999999999996 6778888


Q ss_pred             HHh-cCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHh-ccc
Q 010533          439 AME-AGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVM-VSR  488 (508)
Q Consensus       439 i~~-~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~-~g~  488 (508)
                      +++ .|+++.|+.++..  .+..+|+.|||+|.|++.+++++++.+++ +|+
T Consensus       660 ~v~~~g~l~~Lv~LL~s--~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~  709 (810)
T 3now_A          660 FEGNNDRVKFLALLCED--EDEETATACAGALAIITSVSVKCCEKILAIASW  709 (810)
T ss_dssp             HHSSSSHHHHHHHGGGC--SSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTH
T ss_pred             HHhccCcHHHHHHHhcC--CCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence            886 7899999999954  56899999999999999988999999998 553

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.97  E-value=3.7e-29  Score=269.78  Aligned_cols=334  Identities=12%  Similarity=0.115  Sum_probs=286.0

Q ss_pred             HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHh
Q 010533          124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL  203 (508)
Q Consensus       124 l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l  203 (508)
                      +..|...+.+.       +.+.+..|+..|++++..+ +.+++..+.+.|++|.|+.+|++.  .+.+++..|+++|..+
T Consensus        89 i~~lv~~L~s~-------~~~~~~~A~~~L~~ll~~~-~~~~~~~~~~~g~i~~Lv~~L~~~--~~~~v~~~A~~~L~~l  158 (530)
T 1wa5_B           89 LPQMTQQLNSD-------DMQEQLSATVKFRQILSRE-HRPPIDVVIQAGVVPRLVEFMREN--QPEMLQLEAAWALTNI  158 (530)
T ss_dssp             HHHHHHHHSCS-------SHHHHHHHHHHHHHHTCCS-SSCSHHHHHHTTCHHHHHHTTSTT--SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCC-------CHHHHHHHHHHHHHHhCCC-CCccHHHHHHCCCHHHHHHHhCCC--CCHHHHHHHHHHHHHH
Confidence            66677777665       7888999999999997651 345567788999999999999874  2688999999999999


Q ss_pred             hcCC-cchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHH
Q 010533          204 VHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLY  282 (508)
Q Consensus       204 ~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~  282 (508)
                      +.+. +.+..+++.|+++.|+.+|.+  .+.++++.++++|++++..++.++..++..|+++.|+.+|.+.+..++..++
T Consensus       159 ~~~~~~~~~~~~~~g~i~~Lv~lL~~--~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~  236 (530)
T 1wa5_B          159 ASGTSAQTKVVVDADAVPLFIQLLYT--GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTAT  236 (530)
T ss_dssp             TTSCHHHHHHHHHTTCHHHHHHHHHH--CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHH
T ss_pred             hCCCHHHHHHHHHCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHH
Confidence            8765 345778889999999999985  5899999999999999988889999999999999999999986668999999


Q ss_pred             HHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcC-hhhHhHHhhcCCHHHHHH
Q 010533          283 DAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DEICKSVAENGGIDALLR  361 (508)
Q Consensus       283 ~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~-~e~~~~i~e~Ggi~~Lv~  361 (508)
                      |+|.+|+.+++...         ......|+++.|+.+|.+. ++.++..++++|++|+.. ++....+++.|+++.|+.
T Consensus       237 ~~L~~L~~~~~~~~---------~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~  306 (530)
T 1wa5_B          237 WTLSNLCRGKKPQP---------DWSVVSQALPTLAKLIYSM-DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVE  306 (530)
T ss_dssp             HHHHHHHCCSSSCC---------CHHHHGGGHHHHHHHTTCC-CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHhCCCCCCC---------cHHHHHhHHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHH
Confidence            99999997653221         1233568999999999864 688999999999999974 567888999999999999


Q ss_pred             HHhccCCCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 010533          362 CIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAM  440 (508)
Q Consensus       362 lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~  440 (508)
                      +|.+.    +..++..|+.+|++|+. ++.....+++.|+++.|+.+|.  .+++.+++.|+++|.+|+.+++++...++
T Consensus       307 lL~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~vr~~A~~aL~~l~~~~~~~~~~~~  380 (530)
T 1wa5_B          307 LLSHE----STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS--SPKENIKKEACWTISNITAGNTEQIQAVI  380 (530)
T ss_dssp             GGGCS----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHCCC----ChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99853    35899999999999985 5677888899999999999998  55899999999999999988999999999


Q ss_pred             hcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhc-Cc--cchHHHHhcc
Q 010533          441 EAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR-NP--ENSFCSVMVS  487 (508)
Q Consensus       441 ~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~-~~--e~~~~~~~~g  487 (508)
                      +.|+++.|+++|..  .++.+++.|+|+|.|++.. ++  ++.+++++.|
T Consensus       381 ~~~~l~~L~~lL~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~  428 (530)
T 1wa5_B          381 DANLIPPLVKLLEV--AEYKTKKEACWAISNASSGGLQRPDIIRYLVSQG  428 (530)
T ss_dssp             HTTCHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTT
T ss_pred             HCCCHHHHHHHHhc--CCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCC
Confidence            99999999999975  4689999999999999875 45  7888888766

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.97  E-value=4.3e-29  Score=267.45  Aligned_cols=342  Identities=16%  Similarity=0.138  Sum_probs=288.7

Q ss_pred             HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHH-CCcHHHHHHHHhcccCCCHHHHHHHHHHH
Q 010533          122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATK-NGGVELVCSICYKMRCGSKRVLDSCLKTM  200 (508)
Q Consensus       122 ~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~-~Gavp~Lv~lL~~~~~~~~~~~~~al~aL  200 (508)
                      .++..|...+.+.       |......|+..|.+++.   +.+++..+.. .|++|.|+++|++.  .+.+++..|+.+|
T Consensus        17 ~~i~~Lv~lL~~~-------~~~v~~~A~~~L~~l~~---~~~~~~~~~~~~~~i~~Lv~~L~~~--~~~~~~~~a~~~L   84 (529)
T 1jdh_A           17 RAIPELTKLLNDE-------DQVVVNKAAVMVHQLSK---KEASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTAGTL   84 (529)
T ss_dssp             CHHHHHHHHHTCS-------CHHHHHHHHHHHHHHHT---SHHHHHHHHTCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred             hhHHHHHHHhCCC-------CHHHHHHHHHHHHHHHc---CCccHHHHHhCcchHHHHHHHHhcC--CCHHHHHHHHHHH
Confidence            4678888887765       78888999999999997   4567766665 49999999999864  3788999999999


Q ss_pred             HHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHH
Q 010533          201 ALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQS  280 (508)
Q Consensus       201 a~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~  280 (508)
                      ..++.+.+.+..+.+.|+++.|+++|.+  +++.++..++++|++++..++.++..+++.|+++.|+++|++++..+...
T Consensus        85 ~~ls~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~  162 (529)
T 1jdh_A           85 HNLSHHREGLLAIFKSGGIPALVKMLGS--PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAI  162 (529)
T ss_dssp             HHHTTSHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHH
T ss_pred             HHHHcCchhHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHH
Confidence            9998776778889999999999999974  57999999999999999888888999999999999999999877778888


Q ss_pred             HHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHH
Q 010533          281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALL  360 (508)
Q Consensus       281 A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv  360 (508)
                      ++.+|.+|+..++         ++...+.+.|+++.|+.+|+++.+......++.+|++|+..++++..+++.|+++.|+
T Consensus       163 ~~~~L~~la~~~~---------~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~  233 (529)
T 1jdh_A          163 TTDCLQILAYGNQ---------ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG  233 (529)
T ss_dssp             HHHHHHHHHTTCH---------HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHhCCH---------HHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHH
Confidence            8899999987542         3456677889999999999987666677888999999999999999999999998888


Q ss_pred             HHHhccC-----------------------------------CCCcHHHHHHHHHHHHHhhCC-chhHHHHHhCCcHHHH
Q 010533          361 RCIDDSG-----------------------------------LQGNKTVARICCSLLSKLAGS-DSNKSAIIENGGMDKL  404 (508)
Q Consensus       361 ~lL~~~~-----------------------------------~~~~~~v~~~al~aL~~La~~-~~~k~~Iv~~Ggl~~L  404 (508)
                      .++.+..                                   ...+.+++..++++|++|+.+ ++++..+.+.|+++.|
T Consensus       234 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L  313 (529)
T 1jdh_A          234 LHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL  313 (529)
T ss_dssp             TTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHH
T ss_pred             HHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHH
Confidence            7765421                                   123468889999999999864 5799999999999999


Q ss_pred             HHHHhccCCCHHHHHHHHHHHHHHhcCChh---hHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchH
Q 010533          405 IVVSARFSDDASVLQEVMSIITVLSLRSPE---NAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSF  481 (508)
Q Consensus       405 v~lL~~~~~~~~v~e~a~~aL~~La~~~~~---~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~  481 (508)
                      +++|..+.+++.+++.++++|.+|+.++++   .+..+++.|+++.|+++|+. +.+..+++.+||+|+|++. +++++.
T Consensus       314 ~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~-~~~~~v~~~a~~~l~nl~~-~~~~~~  391 (529)
T 1jdh_A          314 VRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHP-PSHWPLIKATVGLIRNLAL-CPANHA  391 (529)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTST-TCCHHHHHHHHHHHHHHTT-SGGGHH
T ss_pred             HHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhcc-ccchHHHHHHHHHHHHHhc-ChhhhH
Confidence            999986555689999999999999987655   46789999999999999964 4456899999999999986 567778


Q ss_pred             HHHhccc
Q 010533          482 CSVMVSR  488 (508)
Q Consensus       482 ~~~~~g~  488 (508)
                      .+++.|.
T Consensus       392 ~~~~~~~  398 (529)
T 1jdh_A          392 PLREQGA  398 (529)
T ss_dssp             HHHHTTH
T ss_pred             HHHHcCC
Confidence            8888774

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.97  E-value=7.4e-29  Score=267.03  Aligned_cols=392  Identities=11%  Similarity=0.121  Sum_probs=313.7

Q ss_pred             ccCCchhhhhhhhhhc----ccCCCCC-----CCCCCcCCCcccccccCCccCCCCcchhhhhhHHHHHHHHHHHHhhcC
Q 010533           11 HFSNSEQIDFQKQSSL----ITLPQPR-----AHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDLG   81 (508)
Q Consensus        11 ~~~~~~~~~~~~~~~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isQetfd~~v~eni~~~~   81 (508)
                      -.|++++.|+.+.+.|    +..++||     ..|+||..+.||...+++.+++.+..+-..|+.               
T Consensus        83 L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~---------------  147 (528)
T 4b8j_A           83 VYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIAS---------------  147 (528)
T ss_dssp             HTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHT---------------
T ss_pred             HcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhC---------------
Confidence            3577889999998884    6677677     679999999999877654444433221111111               


Q ss_pred             CChhHHHHHHHHHHhhccccCCCccccCCCCCCCCCChHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCC
Q 010533           82 MEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNE  161 (508)
Q Consensus        82 m~p~eal~~aI~q~~~qgvdLs~i~~~~~~~~~~~~~~v~~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~  161 (508)
                       ...+ .+..+   -..                       .++..|...+.+.       +.+....+++.|.++|..  
T Consensus       148 -~~~~-~~~~~---~~~-----------------------g~i~~L~~lL~~~-------~~~v~~~a~~aL~~l~~~--  190 (528)
T 4b8j_A          148 -GTSE-NTKVV---IDH-----------------------GAVPIFVKLLGSS-------SDDVREQAVWALGNVAGD--  190 (528)
T ss_dssp             -SCHH-HHHHH---HHT-----------------------THHHHHHHHTTCS-------CHHHHHHHHHHHHHHHHT--
T ss_pred             -CCHH-HHHHH---HhC-----------------------CcHHHHHHHhcCC-------CHHHHHHHHHHHHHHhCC--
Confidence             0000 11111   111                       2477777777665       678888999999999986  


Q ss_pred             ChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHH
Q 010533          162 GSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFA  241 (508)
Q Consensus       162 ~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~  241 (508)
                      ++.+|..+.+.|++|.|+.+|...  .+..++..|+++|.+++.+.+........|+++.|+.+|.  ..+.+++..+++
T Consensus       191 ~~~~~~~i~~~g~l~~Ll~lL~~~--~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~v~~~a~~  266 (528)
T 4b8j_A          191 SPKCRDLVLANGALLPLLAQLNEH--TKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIH--SNDEEVLTDACW  266 (528)
T ss_dssp             CHHHHHHHHHTTCHHHHHHTCCTT--CCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred             ChhhHHHHHHCCcHHHHHHHHhcC--CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence            788999999999999999999543  4788999999999999987544555667899999999996  468999999999


Q ss_pred             HHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHH
Q 010533          242 VVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSL  321 (508)
Q Consensus       242 ~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL  321 (508)
                      +|++++...+...+.+++.|+++.|+.+|.+.+..++..|+++|.+|+..++         +..+.+.+.|+++.|+.+|
T Consensus       267 aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~---------~~~~~~~~~~~l~~L~~lL  337 (528)
T 4b8j_A          267 ALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDD---------AQTQCIIDHQALPCLLSLL  337 (528)
T ss_dssp             HHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH---------HHHHHHHTTTHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCH---------HHHHHHHHhhhHHHHHHHH
Confidence            9999988777777888899999999999998877899999999999997553         2345667889999999999


Q ss_pred             hcCCChhHHHHHHHHHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC--CchhHHHHHhC
Q 010533          322 HAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG--SDSNKSAIIEN  398 (508)
Q Consensus       322 ~~~~d~~~~~~a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~--~~~~k~~Iv~~  398 (508)
                      .+..++.++..+||+|++|+. +++....+++.|+++.|+.+|...    +.+++..|+++|.+|+.  +++....+++.
T Consensus       338 ~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~----~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~  413 (528)
T 4b8j_A          338 TQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA----EFDIKKEAAWAISNATSGGSHDQIKYLVSE  413 (528)
T ss_dssp             HSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred             cCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC----CHHHHHHHHHHHHHHHcCCCHHHHHHHHHC
Confidence            975467899999999999997 566778899999999999999864    34899999999999974  57888999999


Q ss_pred             CcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChh-----------hHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHH
Q 010533          399 GGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPE-----------NAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCF  467 (508)
Q Consensus       399 Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~-----------~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~  467 (508)
                      |+++.|+.+|.  ..++.++..++.+|.+|+...+.           .+..+.+.|+++.|..++ .| .++.+++.|.+
T Consensus       414 ~~i~~L~~lL~--~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~-~~-~~~~v~~~a~~  489 (528)
T 4b8j_A          414 GCIKPLCDLLI--CPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQ-SH-DNNEIYEKAVK  489 (528)
T ss_dssp             TCHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGG-GC-SSHHHHHHHHH
T ss_pred             CCHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHH-cC-CCHHHHHHHHH
Confidence            99999999998  67899999999999999853333           577788899999988865 45 46889999999


Q ss_pred             HHHHhhhc
Q 010533          468 MIRNLVAR  475 (508)
Q Consensus       468 aL~nL~~~  475 (508)
                      .|.++...
T Consensus       490 il~~~~~~  497 (528)
T 4b8j_A          490 ILEAYWMD  497 (528)
T ss_dssp             HHHHHCC-
T ss_pred             HHHHHCCC
Confidence            99998653

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.97  E-value=3.8e-28  Score=254.57  Aligned_cols=334  Identities=11%  Similarity=0.107  Sum_probs=278.4

Q ss_pred             HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHC-CcHHHHHHHHhcccCCCHHHHHHHHHHHHH
Q 010533          124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKN-GGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (508)
Q Consensus       124 l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~-Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~  202 (508)
                      +..|...+.+.       |.+....|+..|++++....++.. ..+.+. |++|.|+.+|++.  .+.+++..|+++|..
T Consensus        22 l~~l~~~l~s~-------~~~~r~~A~~~L~~l~~~~~~~~~-~~~~~~~~~i~~L~~~L~~~--~~~~v~~~a~~~L~~   91 (450)
T 2jdq_A           22 TSDMIEMIFSK-------SPEQQLSATQKFRKLLSKEPNPPI-DEVISTPGVVARFVEFLKRK--ENCTLQFESAWVLTN   91 (450)
T ss_dssp             CHHHHHHHHSS-------CHHHHHHHHHHHHHHHHSSSSCCH-HHHHTSTTHHHHHHHHHTCT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCC-------CHHHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCcHHHHHHHHCCC--CCHHHHHHHHHHHHH
Confidence            55666666665       788889999999997642113333 345666 9999999999874  368899999999999


Q ss_pred             hhcCC-cchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhc-CChHHHHH
Q 010533          203 LVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSR-QRNDSIQS  280 (508)
Q Consensus       203 l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~-~~~~~~~~  280 (508)
                      ++.+. +.+..+++.|+++.|+++|.+  ++..+++.++++|++++..++.+|..+++.|+++.|+.+|.+ .+..++..
T Consensus        92 l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~  169 (450)
T 2jdq_A           92 IASGNSLQTRIVIQAGAVPIFIELLSS--EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRN  169 (450)
T ss_dssp             HHSSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHH
T ss_pred             HhcCCHHHHHHHHhCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHH
Confidence            98754 445677889999999999984  589999999999999998888899999999999999999996 45589999


Q ss_pred             HHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc-ChhhHhHHhhcCCHHHH
Q 010533          281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDAL  359 (508)
Q Consensus       281 A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~-~~e~~~~i~e~Ggi~~L  359 (508)
                      ++|+|.+|+.+++....        ..++ .|+++.|+.+|++. ++.++..++++|++|+. .++....+.+.|+++.|
T Consensus       170 a~~~L~~l~~~~~~~~~--------~~~~-~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L  239 (450)
T 2jdq_A          170 AVWALSNLCRGKSPPPE--------FAKV-SPCLNVLSWLLFVS-DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRL  239 (450)
T ss_dssp             HHHHHHHHHCCSSSCCC--------GGGT-GGGHHHHHHHTTCC-CHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHH
T ss_pred             HHHHHHHHhCCCCCCCC--------HHHH-HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHH
Confidence            99999999976522111        0122 58999999999864 67899999999999998 45778888899999999


Q ss_pred             HHHHhccCCCCcHHHHHHHHHHHHHhhCC-chhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 010533          360 LRCIDDSGLQGNKTVARICCSLLSKLAGS-DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAAR  438 (508)
Q Consensus       360 v~lL~~~~~~~~~~v~~~al~aL~~La~~-~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~  438 (508)
                      +.+|.+.    +..++..++.+|++|+.. +..+..+++.|+++.|+.+|.  .+++.+++.|+++|.+|+.++++..+.
T Consensus       240 ~~ll~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~--~~~~~vr~~a~~~L~~l~~~~~~~~~~  313 (450)
T 2jdq_A          240 VELLMHN----DYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLS--SPKESIKKEACWTISNITAGNRAQIQT  313 (450)
T ss_dssp             HHHTTCS----CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTT--CSSHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHCCC----chhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            9999742    358999999999999864 566777889999999999998  568999999999999999889999999


Q ss_pred             HHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhc-CccchHHHHhcc
Q 010533          439 AMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR-NPENSFCSVMVS  487 (508)
Q Consensus       439 i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~-~~e~~~~~~~~g  487 (508)
                      +++.|+++.|+++|+.  .++.+++.|||+|.|++.+ +++..+.+++.|
T Consensus       314 ~~~~~~l~~L~~~l~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~  361 (450)
T 2jdq_A          314 VIDANIFPALISILQT--AEFRTRKEAAWAITNATSGGSAEQIKYLVELG  361 (450)
T ss_dssp             HHHTTHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHT
T ss_pred             HHHCCCHHHHHHHHhc--CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCC
Confidence            9999999999999975  4689999999999999976 678888887665

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.97  E-value=5e-28  Score=259.18  Aligned_cols=318  Identities=17%  Similarity=0.191  Sum_probs=254.7

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHH
Q 010533          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (508)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~  202 (508)
                      ++..|...+.+.      .+.+....++..|++++.   +++++..+.+.|++|.|+++|++.   +.+++..|+++|..
T Consensus        60 ~i~~Lv~~L~~~------~~~~~~~~a~~~L~~ls~---~~~~~~~i~~~g~i~~L~~lL~~~---~~~v~~~a~~~L~~  127 (529)
T 1jdh_A           60 MVSAIVRTMQNT------NDVETARCTAGTLHNLSH---HREGLLAIFKSGGIPALVKMLGSP---VDSVLFYAITTLHN  127 (529)
T ss_dssp             HHHHHHHHHHHC------CCHHHHHHHHHHHHHHTT---SHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhcC------CCHHHHHHHHHHHHHHHc---CchhHHHHHHcCCHHHHHHHHcCC---CHHHHHHHHHHHHH
Confidence            466676666532      157788899999999987   567999999999999999999884   68899999999999


Q ss_pred             hhcCC-cchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-HHHHH
Q 010533          203 LVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQS  280 (508)
Q Consensus       203 l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~~  280 (508)
                      ++.+. +.+..+++.|+++.|+++|.+  ++.+++..++.+|.+++..+++++..+++.|+++.|+.+|++++. .....
T Consensus       128 l~~~~~~~~~~i~~~g~i~~L~~ll~~--~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~  205 (529)
T 1jdh_A          128 LLLHQEGAKMAVRLAGGLQKMVALLNK--TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT  205 (529)
T ss_dssp             HHHHCTTHHHHHHHHTHHHHHHHGGGC--CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHH
T ss_pred             HhcCCcchHHHHHHcCCHHHHHHHHhc--CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHH
Confidence            98764 456778899999999999985  578899999999999998889999999999999999999998765 55667


Q ss_pred             HHHHHHHhcCCCcchhhhhhcchHHHHHHhcC---------------------------------------CHHHHHHHH
Q 010533          281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIG---------------------------------------IARALVHSL  321 (508)
Q Consensus       281 A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g---------------------------------------~i~~Lv~lL  321 (508)
                      ++.+|.+|+..++++.          .+.+.|                                       +++.|+.+|
T Consensus       206 a~~~L~~l~~~~~~~~----------~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll  275 (529)
T 1jdh_A          206 TSRVLKVLSVCSSNKP----------AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL  275 (529)
T ss_dssp             HHHHHHHHTTSTTHHH----------HHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCcccHH----------HHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHH
Confidence            8899999997665443          233333                                       455666666


Q ss_pred             hcCCChhHHHHHHHHHHHhhcC-hhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC-ch---hHHHHH
Q 010533          322 HAGLSSPSLISASIALKAVAVN-DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGS-DS---NKSAII  396 (508)
Q Consensus       322 ~~~~d~~~~~~a~~aL~~La~~-~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~-~~---~k~~Iv  396 (508)
                      .+ .+++++..++++|++|+.. ++++..+.+.||++.|+.+|....+  +.+++..++.+|++|+.. ++   .+..++
T Consensus       276 ~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~  352 (529)
T 1jdh_A          276 GS-DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD--REDITEPAICALRHLTSRHQEAEMAQNAVR  352 (529)
T ss_dssp             TC-SCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHTSSSTTHHHHHHHHH
T ss_pred             cC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCC--HHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence            43 3677889999999999885 5789999999999999999986433  248999999999999864 23   467899


Q ss_pred             hCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 010533          397 ENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRN  471 (508)
Q Consensus       397 ~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~n  471 (508)
                      +.|++|.|+++|.. ..++.+++.++++|.+++. +++++..+++.|+++.|+++|+.  .+..++++|+|+|.|
T Consensus       353 ~~~~i~~L~~lL~~-~~~~~v~~~a~~~l~nl~~-~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~l~n  423 (529)
T 1jdh_A          353 LHYGLPVVVKLLHP-PSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVR--AHQDTQRRTSMGGTQ  423 (529)
T ss_dssp             HTTCHHHHHHTTST-TCCHHHHHHHHHHHHHHTT-SGGGHHHHHHTTHHHHHHHHHHH--HHHHHC---------
T ss_pred             HcCChhHHHHHhcc-ccchHHHHHHHHHHHHHhc-ChhhhHHHHHcCCHHHHHHHHHH--HhHHHHHHHhcccCc
Confidence            99999999999982 3347999999999999996 67788999999999999999975  457788888887776

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.96  E-value=9.8e-28  Score=265.10  Aligned_cols=341  Identities=16%  Similarity=0.136  Sum_probs=284.6

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHC-CcHHHHHHHHhcccCCCHHHHHHHHHHHH
Q 010533          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKN-GGVELVCSICYKMRCGSKRVLDSCLKTMA  201 (508)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~-Gavp~Lv~lL~~~~~~~~~~~~~al~aLa  201 (508)
                      ++..|...+.+.       +......|+..|.++|..   ..++..+... |++|.|+++|++.  .+.+++..|+.+|.
T Consensus        15 ~i~~Lv~lL~~~-------~~~vr~~A~~~L~~La~~---~~~~~~i~~~~~~i~~Lv~~L~~~--~~~~~~~~A~~~L~   82 (644)
T 2z6h_A           15 AIPELTKLLNDE-------DQVVVNKAAVMVHQLSKK---EASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTAGTLH   82 (644)
T ss_dssp             THHHHHHHHTCS-------CHHHHHHHHHHHHHHHTS---TTHHHHHTTCHHHHHHHHHHHHSC--CCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHcCC-------CHHHHHHHHHHHHHHHCC---ChhHHHHHhccChHHHHHHHHhcC--CCHHHHHHHHHHHH
Confidence            477777777665       788889999999999985   4566666654 8999999999874  47889999999999


Q ss_pred             HhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHH
Q 010533          202 LLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSL  281 (508)
Q Consensus       202 ~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A  281 (508)
                      .++...+.+..+.+.|+++.|+++|.+  ++..++..++++|.+++..++.++..+++.|+++.|+++|++++..++..+
T Consensus        83 ~Ls~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a  160 (644)
T 2z6h_A           83 NLSHHREGLLAIFKSGGIPALVKMLGS--PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAIT  160 (644)
T ss_dssp             HHTTSHHHHHHHHTTTHHHHHHHHTTC--SSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHH
T ss_pred             HHhcChhhHHHHHHcCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHH
Confidence            988776778889999999999999974  479999999999999998878889899999999999999998776777778


Q ss_pred             HHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHH
Q 010533          282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLR  361 (508)
Q Consensus       282 ~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~  361 (508)
                      +.+|.+|+..+         .++...+++.|+++.|+.+|++.....++..++.+|++|+..++++..+++.|+++.|+.
T Consensus       161 ~~~L~~La~~~---------~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~  231 (644)
T 2z6h_A          161 TDCLQILAYGN---------QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGL  231 (644)
T ss_dssp             HHHHHHHHTTC---------HHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHT
T ss_pred             HHHHHHHHhcC---------cHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHH
Confidence            88999999643         234556778899999999999876667788999999999999999999999999988877


Q ss_pred             HHhccC-----------------------------------CCCcHHHHHHHHHHHHHhhCC-chhHHHHHhCCcHHHHH
Q 010533          362 CIDDSG-----------------------------------LQGNKTVARICCSLLSKLAGS-DSNKSAIIENGGMDKLI  405 (508)
Q Consensus       362 lL~~~~-----------------------------------~~~~~~v~~~al~aL~~La~~-~~~k~~Iv~~Ggl~~Lv  405 (508)
                      ++....                                   ...+.+++..++++|++|+.+ ++++..+++.|+++.|+
T Consensus       232 ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv  311 (644)
T 2z6h_A          232 HLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV  311 (644)
T ss_dssp             TTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHH
Confidence            664310                                   112458889999999999864 58899999999999999


Q ss_pred             HHHhccCCCHHHHHHHHHHHHHHhcCChh---hHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHH
Q 010533          406 VVSARFSDDASVLQEVMSIITVLSLRSPE---NAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFC  482 (508)
Q Consensus       406 ~lL~~~~~~~~v~e~a~~aL~~La~~~~~---~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~  482 (508)
                      ++|..+++.+.+++.|+++|.+|+.++++   .+..+++.|+++.|+++|+. +++..+++.|||+|+|++. +++++..
T Consensus       312 ~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nLa~-~~~~~~~  389 (644)
T 2z6h_A          312 RTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHP-PSHWPLIKATVGLIRNLAL-CPANHAP  389 (644)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTST-TCCHHHHHHHHHHHHHHTT-SGGGHHH
T ss_pred             HHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCc-cCchHHHHHHHHHHHHHcc-CHHHHHH
Confidence            99985444589999999999999976653   35568899999999999964 4557899999999999986 4667788


Q ss_pred             HHhccc
Q 010533          483 SVMVSR  488 (508)
Q Consensus       483 ~~~~g~  488 (508)
                      +++.|.
T Consensus       390 i~~~~~  395 (644)
T 2z6h_A          390 LREQGA  395 (644)
T ss_dssp             HHHTTH
T ss_pred             HHHcCC
Confidence            888774

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.96  E-value=1.6e-27  Score=256.90  Aligned_cols=389  Identities=12%  Similarity=0.131  Sum_probs=307.0

Q ss_pred             cCCchhhhhhhhhh----cccCCCCC-----CCCCCcCCCcccccccCCccCCCCcchhhhhhHHHHHHHHHHHHhhcCC
Q 010533           12 FSNSEQIDFQKQSS----LITLPQPR-----AHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDLGM   82 (508)
Q Consensus        12 ~~~~~~~~~~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isQetfd~~v~eni~~~~m   82 (508)
                      .|++.+.++.+.+.    ++.+++|+     ..|+||..+.||...++..+++.+..+-..|+..               
T Consensus        97 ~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~---------------  161 (530)
T 1wa5_B           97 NSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASG---------------  161 (530)
T ss_dssp             SCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS---------------
T ss_pred             cCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC---------------
Confidence            46678888888887    35555665     4799999999998765444443322111111110               


Q ss_pred             ChhHHHHHHHHHHhhccccCCCccccCCCCCCCCCChHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCC
Q 010533           83 EPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEG  162 (508)
Q Consensus        83 ~p~eal~~aI~q~~~qgvdLs~i~~~~~~~~~~~~~~v~~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~  162 (508)
                      .+ + .++.   +-..|                       ++..|...+.+.       +.+....|++.|.++|..  +
T Consensus       162 ~~-~-~~~~---~~~~g-----------------------~i~~Lv~lL~~~-------~~~vr~~A~~aL~~l~~~--~  204 (530)
T 1wa5_B          162 TS-A-QTKV---VVDAD-----------------------AVPLFIQLLYTG-------SVEVKEQAIWALGNVAGD--S  204 (530)
T ss_dssp             CH-H-HHHH---HHHTT-----------------------CHHHHHHHHHHC-------CHHHHHHHHHHHHHHHTT--C
T ss_pred             CH-H-HHHH---HHHCC-----------------------CHHHHHHHHcCC-------CHHHHHHHHHHHHHHhCC--C
Confidence            00 0 1111   11122                       245555555554       678888999999999986  7


Q ss_pred             hhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCC-cchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHH
Q 010533          163 SVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFA  241 (508)
Q Consensus       163 ~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~  241 (508)
                      +.++..+...|++|.|+.+|.+   .+.+++..|+++|..++.+. +........++++.|+.+|..  ++..++..+++
T Consensus       205 ~~~~~~~~~~~~l~~L~~ll~~---~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~--~d~~v~~~a~~  279 (530)
T 1wa5_B          205 TDYRDYVLQCNAMEPILGLFNS---NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS--MDTETLVDACW  279 (530)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGS---CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTC--CCHHHHHHHHH
T ss_pred             ccchHHHHHcCcHHHHHHHhcc---CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcC--CCHHHHHHHHH
Confidence            8899999999999999999987   47889999999999999765 444566678999999999974  57899999999


Q ss_pred             HHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHH
Q 010533          242 VVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSL  321 (508)
Q Consensus       242 ~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL  321 (508)
                      +|.+++...+..++.+++.|+++.|+.+|.+.+..++..|+++|.+|+..++         +..+.+.+.|+++.|+.+|
T Consensus       280 ~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~---------~~~~~~~~~~~l~~L~~lL  350 (530)
T 1wa5_B          280 AISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND---------LQTQVVINAGVLPALRLLL  350 (530)
T ss_dssp             HHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH---------HHHHHHHHTTHHHHHHHHT
T ss_pred             HHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCH---------HHHHHHHHcchHHHHHHHH
Confidence            9999998888888889999999999999998777889999999999997653         2345566889999999999


Q ss_pred             hcCCChhHHHHHHHHHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC--Cc--hhHHHHH
Q 010533          322 HAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG--SD--SNKSAII  396 (508)
Q Consensus       322 ~~~~d~~~~~~a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~--~~--~~k~~Iv  396 (508)
                      .+. +..+...++++|++|+. +++..+.+++.|+++.|+.+|.+.    +..++..++++|++|+.  .+  +....++
T Consensus       351 ~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~  425 (530)
T 1wa5_B          351 SSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA----EYKTKKEACWAISNASSGGLQRPDIIRYLV  425 (530)
T ss_dssp             TCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHTTTCTHHHHHHH
T ss_pred             cCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC----CHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            875 67899999999999996 667788889999999999999863    34899999999999973  44  7788899


Q ss_pred             hCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChh-----------hHHHHHhcCcHHHHHHHHHcCCCcHHHHHHH
Q 010533          397 ENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPE-----------NAARAMEAGSGDLAIQAMLKFPNAQQLQRSS  465 (508)
Q Consensus       397 ~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~-----------~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A  465 (508)
                      +.|+++.|+.+|.  ..++.+++.++++|.+|+...+.           .+..+.+.|+++.|..++ .|+ +..+++.|
T Consensus       426 ~~~~l~~L~~ll~--~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~-~~~-~~~v~~~a  501 (530)
T 1wa5_B          426 SQGCIKPLCDLLE--IADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQ-QNE-NDKIYEKA  501 (530)
T ss_dssp             HTTCHHHHHHHTT--TCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGG-GCS-CHHHHHHH
T ss_pred             HCCCHHHHHHHHh--CCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHH-cCC-CHHHHHHH
Confidence            9999999999998  66899999999999999864332           356788999999998866 454 57899999


Q ss_pred             HHHHHHhhhc
Q 010533          466 CFMIRNLVAR  475 (508)
Q Consensus       466 ~~aL~nL~~~  475 (508)
                      .++|.++...
T Consensus       502 ~~il~~~~~~  511 (530)
T 1wa5_B          502 YKIIETYFGE  511 (530)
T ss_dssp             HHHHHHHSSS
T ss_pred             HHHHHHHCCc
Confidence            9999998753

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.96  E-value=4.5e-27  Score=246.41  Aligned_cols=324  Identities=12%  Similarity=0.126  Sum_probs=273.0

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHH
Q 010533          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (508)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~  202 (508)
                      .+..|...+.+.      .+.+....+++.|.+++..  +++++..+.+.|++|.|+.+|++   ++.+++..|+++|..
T Consensus        65 ~i~~L~~~L~~~------~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~lL~~---~~~~vr~~a~~~L~~  133 (450)
T 2jdq_A           65 VVARFVEFLKRK------ENCTLQFESAWVLTNIASG--NSLQTRIVIQAGAVPIFIELLSS---EFEDVQEQAVWALGN  133 (450)
T ss_dssp             HHHHHHHHHTCT------TCHHHHHHHHHHHHHHHSS--CHHHHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHCCC------CCHHHHHHHHHHHHHHhcC--CHHHHHHHHhCCCHHHHHHHHcC---CCHHHHHHHHHHHHH
Confidence            466677776553      1567788999999999986  77888888899999999999987   478999999999999


Q ss_pred             hhcCC-cchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCC-hhhHHHHHHcCcHHHHHHHHhcCChHHHHH
Q 010533          203 LVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGN-EVVKESYMELKIDELILEILSRQRNDSIQS  280 (508)
Q Consensus       203 l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~-e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~  280 (508)
                      ++.+. +.+..+++.|+++.|+++|.. ..+..++..++++|++++... +..+..++ .|+++.|+.+|.+.+..++..
T Consensus       134 l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~  211 (450)
T 2jdq_A          134 IAGDSTMCRDYVLDCNILPPLLQLFSK-QNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLAD  211 (450)
T ss_dssp             HHTTCHHHHHHHHHTTCHHHHHHHTTS-CCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHH
T ss_pred             HccCCHHHHHHHHHCCCHHHHHHHhcC-CCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHH
Confidence            98765 346778889999999999974 357899999999999998654 33333333 789999999999877789999


Q ss_pred             HHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcC-hhhHhHHhhcCCHHHH
Q 010533          281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DEICKSVAENGGIDAL  359 (508)
Q Consensus       281 A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~-~e~~~~i~e~Ggi~~L  359 (508)
                      ++|+|.+|+..+.         +..+.+.+.|+++.|+.+|.+ .+..++..++++|++|+.. ++..+.+.+.|+++.|
T Consensus       212 a~~~L~~l~~~~~---------~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L  281 (450)
T 2jdq_A          212 ACWALSYLSDGPN---------DKIQAVIDAGVCRRLVELLMH-NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSL  281 (450)
T ss_dssp             HHHHHHHHTSSSH---------HHHHHHHHTTTHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHH
T ss_pred             HHHHHHHHHCCCc---------HHHHHHHHcCcHHHHHHHHCC-CchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHH
Confidence            9999999997542         234566788999999999985 4678999999999999985 4556778899999999


Q ss_pred             HHHHhccCCCCcHHHHHHHHHHHHHhh-CCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcC-ChhhHH
Q 010533          360 LRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLR-SPENAA  437 (508)
Q Consensus       360 v~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~-~~~~~~  437 (508)
                      +.+|.+.    +..++..++++|++|+ ++++....+++.|++|.|+.+|.  .+++.+++.|+++|.+|+.+ ++++.+
T Consensus       282 ~~ll~~~----~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~--~~~~~v~~~a~~~L~~l~~~~~~~~~~  355 (450)
T 2jdq_A          282 LHLLSSP----KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQ--TAEFRTRKEAAWAITNATSGGSAEQIK  355 (450)
T ss_dssp             HHHTTCS----SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred             HHHHcCC----CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh--cCCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence            9999863    3589999999999998 47788888999999999999998  56899999999999999975 788888


Q ss_pred             HHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCc
Q 010533          438 RAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNP  477 (508)
Q Consensus       438 ~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~  477 (508)
                      .+++.|+++.|+++|..  .+..+++.|+++|.+++...+
T Consensus       356 ~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~  393 (450)
T 2jdq_A          356 YLVELGCIKPLCDLLTV--MDSKIVQVALNGLENILRLGE  393 (450)
T ss_dssp             HHHHHTCHHHHHHGGGS--SCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHhcC--CCHHHHHHHHHHHHHHHHhch
Confidence            89999999999999974  468999999999999987543

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.96  E-value=1.5e-26  Score=255.67  Aligned_cols=333  Identities=14%  Similarity=0.139  Sum_probs=277.8

Q ss_pred             HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHH
Q 010533          122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA  201 (508)
Q Consensus       122 ~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa  201 (508)
                      .++..|...+.+.       +......++..|.+++..  +++++..+.+.|++|.|+.+|++.  ....++..++.+|.
T Consensus       140 g~i~~Lv~lL~~~-------~~~~~~~a~~~L~~La~~--~~~~~~~i~~~g~v~~Lv~lL~~~--~~~~~~~~a~~~L~  208 (644)
T 2z6h_A          140 GGLQKMVALLNKT-------NVKFLAITTDCLQILAYG--NQESKLIILASGGPQALVNIMRTY--TYEKLLWTTSRVLK  208 (644)
T ss_dssp             THHHHHHHGGGCC-------CHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTHHHHHHHHHTTC--CCHHHHHHHHHHHH
T ss_pred             CChHHHHHHHCcC-------CHHHHHHHHHHHHHHHhc--CcHHHHHHHHcCChHHHHHHHHcC--ChHHHHHHHHHHHH
Confidence            4677888887764       555666677899999986  789999999999999999999876  35667777888888


Q ss_pred             HhhcCCcchhHHHhcCChHHHHHHHhc-------------------------------------CCCCHHHHHHHHHHHH
Q 010533          202 LLVHDVQSTETFRTGGGPKLLVNILID-------------------------------------GNEDPEILNSGFAVVA  244 (508)
Q Consensus       202 ~l~~~~~~~~~i~~~ggi~~Lv~lL~~-------------------------------------~~~~~~v~~~a~~~L~  244 (508)
                      +++...+.+..+++.|+++.|+++|..                                     .+.+.+++..++++|+
T Consensus       209 nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~  288 (644)
T 2z6h_A          209 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS  288 (644)
T ss_dssp             HHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            888766777888888888877766543                                     1357888999999999


Q ss_pred             HhhcCChhhHHHHHHcCcHHHHHHHHhcCC--hHHHHHHHHHHHHhcCCCcchhhhhhcchHHH-HHHhcCCHHHHHHHH
Q 010533          245 ASATGNEVVKESYMELKIDELILEILSRQR--NDSIQSLYDAIRVLLTPDDDQVVASQVYGYAR-RFAKIGIARALVHSL  321 (508)
Q Consensus       245 ~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~--~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~-~i~~~g~i~~Lv~lL  321 (508)
                      +++..++.+++.+.+.|+++.|+.+|...+  ..++..|+++|.+|+..+..       .+..+ .+.+.|+++.|+++|
T Consensus       289 ~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~-------~~~~q~~v~~~~~l~~L~~lL  361 (644)
T 2z6h_A          289 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQE-------AEMAQNAVRLHYGLPVVVKLL  361 (644)
T ss_dssp             HHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTT-------HHHHHHHHHHTTHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCch-------HHHHHHHHHHccChHHHHHHh
Confidence            998888889999999999999999998743  47889999999999864321       11223 356889999999999


Q ss_pred             hcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccC-----------------C-CCcHHHHHHHHHHHH
Q 010533          322 HAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSG-----------------L-QGNKTVARICCSLLS  383 (508)
Q Consensus       322 ~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~-----------------~-~~~~~v~~~al~aL~  383 (508)
                      ++..+..++..+|++|++|+..+++...+.+.|+++.|+++|....                 + ..+.+++..++.+|+
T Consensus       362 ~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~  441 (644)
T 2z6h_A          362 HPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALH  441 (644)
T ss_dssp             STTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHH
T ss_pred             CccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHH
Confidence            9765568999999999999999888899999999999999998621                 0 013478889999999


Q ss_pred             HhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHH
Q 010533          384 KLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQR  463 (508)
Q Consensus       384 ~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~  463 (508)
                      +|+.++.++..+.+.|+++.|+++|.  ..++.+++.++++|.+|+ .+++.+..+.+.|+++.|++++.  ..++.+++
T Consensus       442 ~La~~~~~~~~l~~~~~i~~Lv~lL~--~~~~~v~~~a~~aL~~l~-~~~~~~~~i~~~g~l~~L~~ll~--~~~~~vr~  516 (644)
T 2z6h_A          442 ILARDVHNRIVIRGLNTIPLFVQLLY--SPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLH--SRNEGVAT  516 (644)
T ss_dssp             HHTTSHHHHHHHHHTTCHHHHHHHTT--CSCHHHHHHHHHHHHHHH-TSHHHHHHHHHTTCHHHHHHHTT--CSCHHHHH
T ss_pred             HHhcCHHHHHHHHhCCcHHHHHHHHc--CCCHHHHHHHHHHHHHHH-cCHHHHHHHHHcCChhHHHHHHc--CCCHHHHH
Confidence            99999999999999999999999998  678999999999999999 47889999999999999999884  35789999


Q ss_pred             HHHHHHHHhhhcCc
Q 010533          464 SSCFMIRNLVARNP  477 (508)
Q Consensus       464 ~A~~aL~nL~~~~~  477 (508)
                      .|+++|.+|+...+
T Consensus       517 ~A~~aL~~l~~~~~  530 (644)
T 2z6h_A          517 YAAAVLFRMSEDKP  530 (644)
T ss_dssp             HHHHHHHHHTTTSC
T ss_pred             HHHHHHHHHhccCc
Confidence            99999999987544

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.96  E-value=7e-27  Score=263.75  Aligned_cols=342  Identities=16%  Similarity=0.140  Sum_probs=284.3

Q ss_pred             HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHC-CcHHHHHHHHhcccCCCHHHHHHHHHHH
Q 010533          122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKN-GGVELVCSICYKMRCGSKRVLDSCLKTM  200 (508)
Q Consensus       122 ~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~-Gavp~Lv~lL~~~~~~~~~~~~~al~aL  200 (508)
                      .++..|...+.+.       +......|+..|..+|..   ..++..+... |+++.|+++|++.  .+.+++..|+.+|
T Consensus       150 g~ip~Lv~lL~~~-------d~~vr~~A~~~L~~L~~~---~~~~~~i~~~~~~i~~Lv~~L~~~--~d~~vr~~Aa~aL  217 (780)
T 2z6g_A          150 RAIPELTKLLNDE-------DQVVVNKAAVMVHQLSKK---EASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTSGTL  217 (780)
T ss_dssp             HHHHHHHHHHHCS-------CHHHHHHHHHHHHHHHTS---HHHHHHHTTCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHCCC-------CHHHHHHHHHHHHHHhCC---ChhHHHHHhccChHHHHHHHHcCC--CCHHHHHHHHHHH
Confidence            4677788877765       778888999999999984   5566667654 8999999999875  3788999999999


Q ss_pred             HHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHH
Q 010533          201 ALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQS  280 (508)
Q Consensus       201 a~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~  280 (508)
                      ..++...+++..+.+.|+++.|+++|.+  .+..++..++++|.+++..++.++..+++.|+++.|+.+|++.+..+...
T Consensus       218 ~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~--~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~  295 (780)
T 2z6g_A          218 HNLSHHREGLLAIFKSGGIPALVNMLGS--PVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAI  295 (780)
T ss_dssp             HHHHTSHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHH
T ss_pred             HHHhCCchhHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHH
Confidence            9988766667888899999999999985  47999999999999999888888999999999999999999876678888


Q ss_pred             HHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHH
Q 010533          281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALL  360 (508)
Q Consensus       281 A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv  360 (508)
                      ++.+|.+|+..++         +....+++.|+++.|+.+|+++........++.+|++|+..++++..+++.|+++.|+
T Consensus       296 a~~aL~~La~~~~---------e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll  366 (780)
T 2z6g_A          296 TTDCLQILAYGNQ---------ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG  366 (780)
T ss_dssp             HHHHHHHHHTTCH---------HHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHG
T ss_pred             HHHHHHHHhcCCh---------HHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHH
Confidence            9999999986432         3445667889999999999987656667788999999999889999999999888887


Q ss_pred             HHHhccC-----------------------------------CCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCCcHHHH
Q 010533          361 RCIDDSG-----------------------------------LQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKL  404 (508)
Q Consensus       361 ~lL~~~~-----------------------------------~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~L  404 (508)
                      .+|.+..                                   ...+..++..|+++|++|+. +++++..+++.|+++.|
T Consensus       367 ~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~L  446 (780)
T 2z6g_A          367 LHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL  446 (780)
T ss_dssp             GGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHH
T ss_pred             HHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHH
Confidence            7664320                                   12346888999999999986 45889999999999999


Q ss_pred             HHHHhccCCCHHHHHHHHHHHHHHhcCChhh---HHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchH
Q 010533          405 IVVSARFSDDASVLQEVMSIITVLSLRSPEN---AARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSF  481 (508)
Q Consensus       405 v~lL~~~~~~~~v~e~a~~aL~~La~~~~~~---~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~  481 (508)
                      +++|....+.+.+++.|+++|.+|+.++++.   +..+...|+++.|+++|. +++...+++.|||+|+||+. +++++.
T Consensus       447 v~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~-~~~~~~v~~~A~~aL~nLa~-~~~~~~  524 (780)
T 2z6g_A          447 VRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLH-PPSHWPLIKATVGLIRNLAL-CPANHA  524 (780)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTS-TTCCHHHHHHHHHHHHHHHS-SHHHHH
T ss_pred             HHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhc-CCChHHHHHHHHHHHHHHhc-CHHHHH
Confidence            9999854444689999999999999876653   568889999999999996 44556899999999999986 577778


Q ss_pred             HHHhccc
Q 010533          482 CSVMVSR  488 (508)
Q Consensus       482 ~~~~~g~  488 (508)
                      .+++.|.
T Consensus       525 ~i~~~g~  531 (780)
T 2z6g_A          525 PLREQGA  531 (780)
T ss_dssp             HHHHTTH
T ss_pred             HHHHCCC
Confidence            8888773

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.95  E-value=4e-26  Score=220.12  Aligned_cols=242  Identities=18%  Similarity=0.270  Sum_probs=216.1

Q ss_pred             CChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchh
Q 010533          217 GGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQV  296 (508)
Q Consensus       217 ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~  296 (508)
                      |+++.|+++|.+  ++.+++..++++|.+++..++.++..+++.|+++.|+.+|++.+.+++..++++|.+|+.+++   
T Consensus         2 ~~i~~L~~~L~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~---   76 (252)
T 4hxt_A            2 NDVEKLVKLLTS--TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD---   76 (252)
T ss_dssp             CHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH---
T ss_pred             CcHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh---
Confidence            578999999985  469999999999999998888899999999999999999999887899999999999997642   


Q ss_pred             hhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhh-cChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHH
Q 010533          297 VASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA-VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVA  375 (508)
Q Consensus       297 ~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La-~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~  375 (508)
                            ++...+.+.|+++.|+.+|++ .++.++..++++|++|+ .+++++..+.+.|+++.|+++|.+.    +..++
T Consensus        77 ------~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~----~~~~~  145 (252)
T 4hxt_A           77 ------EAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST----DSEVQ  145 (252)
T ss_dssp             ------HHHHHHHHTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS----CHHHH
T ss_pred             ------HHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC----CHHHH
Confidence                  345567789999999999996 46889999999999999 5788999999999999999999863    34899


Q ss_pred             HHHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHc
Q 010533          376 RICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLK  454 (508)
Q Consensus       376 ~~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~  454 (508)
                      ..++++|++|+. +++.+..+++.|+++.|+.+|.  ++++.+++.++++|.+|+..+++++..+++.|+++.|+++++.
T Consensus       146 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~  223 (252)
T 4hxt_A          146 KEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT--STDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTS  223 (252)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHC--CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCC
Confidence            999999999986 5677789999999999999998  6789999999999999998899999999999999999999963


Q ss_pred             CCCcHHHHHHHHHHHHHhhhcCcc
Q 010533          455 FPNAQQLQRSSCFMIRNLVARNPE  478 (508)
Q Consensus       455 h~~~~~vq~~A~~aL~nL~~~~~e  478 (508)
                        .++.+++.|+|+|+||+...+.
T Consensus       224 --~~~~v~~~a~~~L~~l~~~~~~  245 (252)
T 4hxt_A          224 --TDSEVQKEAQRALENIKSGGWL  245 (252)
T ss_dssp             --SCHHHHHHHHHHHHHHHHTCBC
T ss_pred             --CcHHHHHHHHHHHHHHHcCCCc
Confidence              4679999999999999976543

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.95  E-value=2.3e-25  Score=251.42  Aligned_cols=333  Identities=14%  Similarity=0.132  Sum_probs=267.4

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHH
Q 010533          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (508)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~  202 (508)
                      ++..|...+.+.       +......++..|+.++..  +++++..+.+.|+++.|+.+|+..  ........++.+|.+
T Consensus       277 ~v~~Lv~lL~~~-------~~~v~~~a~~aL~~La~~--~~e~~~~i~~~~~i~~Lv~lL~~~--~~~~~~~~a~~aL~~  345 (780)
T 2z6g_A          277 GLQKMVALLNKT-------NVKFLAITTDCLQILAYG--NQESKLIILASGGPQALVNIMRTY--TYEKLLWTTSRVLKV  345 (780)
T ss_dssp             HHHHHHHGGGCC-------CHHHHHHHHHHHHHHHTT--CHHHHHHHHTTTHHHHHHHHHTTC--CCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhcC-------CHHHHHHHHHHHHHHhcC--ChHHHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHHHHHHH
Confidence            445555555443       555566677888889876  789999999999999999999875  344555556666666


Q ss_pred             hhcCCcchhHHHhcCChHHHHHHHhc-------------------------------------CCCCHHHHHHHHHHHHH
Q 010533          203 LVHDVQSTETFRTGGGPKLLVNILID-------------------------------------GNEDPEILNSGFAVVAA  245 (508)
Q Consensus       203 l~~~~~~~~~i~~~ggi~~Lv~lL~~-------------------------------------~~~~~~v~~~a~~~L~~  245 (508)
                      ++.....+..+++.|+++.|+.+|..                                     .+.+.+++..++++|++
T Consensus       346 Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~  425 (780)
T 2z6g_A          346 LSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSN  425 (780)
T ss_dssp             HHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             hhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            66555556677777766666554432                                     13578899999999999


Q ss_pred             hhcCChhhHHHHHHcCcHHHHHHHHhcCC-h-HHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhc
Q 010533          246 SATGNEVVKESYMELKIDELILEILSRQR-N-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHA  323 (508)
Q Consensus       246 l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~-~-~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~  323 (508)
                      ++..++.++..+++.|+++.|+.+|...+ . .++..|+++|.+|+..+...      ......+.+.|+++.|+++|.+
T Consensus       426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~------~~~~~~v~~~~~l~~L~~lL~~  499 (780)
T 2z6g_A          426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDA------EMAQNAVRLHYGLPVVVKLLHP  499 (780)
T ss_dssp             HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTH------HHHHHHHHHTTCHHHHHHTTST
T ss_pred             HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchH------HHHHHHHHHcCCHHHHHHHhcC
Confidence            98888889999999999999999998743 2 78889999999998644210      0122356688999999999987


Q ss_pred             CCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccC-----------------C-CCcHHHHHHHHHHHHHh
Q 010533          324 GLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSG-----------------L-QGNKTVARICCSLLSKL  385 (508)
Q Consensus       324 ~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~-----------------~-~~~~~v~~~al~aL~~L  385 (508)
                      ..+..++..+|++|++|+..+++...+.+.|+++.|+++|.+..                 + ....+++..++.+|++|
T Consensus       500 ~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~L  579 (780)
T 2z6g_A          500 PSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHIL  579 (780)
T ss_dssp             TCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHH
Confidence            65458999999999999999888899999999999999997521                 0 01236788999999999


Q ss_pred             hCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHH
Q 010533          386 AGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSS  465 (508)
Q Consensus       386 a~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A  465 (508)
                      +.++.++..+++.|+++.|+.+|.  +.++.+++.|+.+|.+|+ .+++.+..+.+.|+++.|++++. + .++.|++.|
T Consensus       580 a~~~~~~~~l~~~~~i~~Lv~lL~--~~~~~v~~~a~~aL~~L~-~~~~~~~~i~~~g~i~~L~~Ll~-~-~~~~Vr~~A  654 (780)
T 2z6g_A          580 ARDIHNRIVIRGLNTIPLFVQLLY--SPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLH-S-RNEGVATYA  654 (780)
T ss_dssp             TTSHHHHHHHHHTCCHHHHHHGGG--CSCHHHHHHHHHHHHHHH-TSHHHHHHHHHTTCHHHHHHGGG-C-SCHHHHHHH
T ss_pred             hcChhhHHHHHHCCcHHHHHHHHc--CCCHHHHHHHHHHHHHHh-cCHHHHHHHHHCCCHHHHHHHHc-C-CCHHHHHHH
Confidence            999999999999999999999998  678999999999999998 57899999999999999999985 3 578999999


Q ss_pred             HHHHHHhhhcCc
Q 010533          466 CFMIRNLVARNP  477 (508)
Q Consensus       466 ~~aL~nL~~~~~  477 (508)
                      +|+|.+|+...+
T Consensus       655 ~~aL~~l~~~~~  666 (780)
T 2z6g_A          655 AAVLFRMSEDKP  666 (780)
T ss_dssp             HHHHHHHHTTSC
T ss_pred             HHHHHHHHcCCh
Confidence            999999987554

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.94  E-value=8.2e-26  Score=219.14  Aligned_cols=238  Identities=17%  Similarity=0.198  Sum_probs=210.8

Q ss_pred             CChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchh
Q 010533          217 GGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQV  296 (508)
Q Consensus       217 ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~  296 (508)
                      ...+.+++.|.+  ++.+++..++++|+++.+.++.++..+++.|+++.|+.+|++.+.+++..|+++|.+|+.+++   
T Consensus        12 ~~~~~~~~~L~s--~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~---   86 (252)
T 4db8_A           12 SELPQMTQQLNS--DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN---   86 (252)
T ss_dssp             CSHHHHHHHHHS--SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH---
T ss_pred             chHHHHHHHHcC--CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH---
Confidence            357889999974  578899999999987666678889999999999999999998887899999999999997542   


Q ss_pred             hhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhH-hHHhhcCCHHHHHHHHhccCCCCcHHHH
Q 010533          297 VASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEIC-KSVAENGGIDALLRCIDDSGLQGNKTVA  375 (508)
Q Consensus       297 ~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~-~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~  375 (508)
                            ++...+++.|+++.|+.+|++. ++.++..++++|++|+..++.+ ..+.+.|+++.|+++|.+.    +..++
T Consensus        87 ------~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~----~~~v~  155 (252)
T 4db8_A           87 ------EQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP----NEQIL  155 (252)
T ss_dssp             ------HHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS----CHHHH
T ss_pred             ------HHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC----CHHHH
Confidence                  3456777899999999999974 6889999999999999988887 8899999999999999763    35899


Q ss_pred             HHHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHc
Q 010533          376 RICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLK  454 (508)
Q Consensus       376 ~~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~  454 (508)
                      ..++++|++|+. +++++..+++.|+++.|+++|.  .+++.+++.++++|.+|+..+++++..+++.|+++.|+++|..
T Consensus       156 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~  233 (252)
T 4db8_A          156 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH  233 (252)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGG--CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTC
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHC--CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCC
Confidence            999999999986 5688888999999999999998  5689999999999999998899999999999999999999964


Q ss_pred             CCCcHHHHHHHHHHHHHhhh
Q 010533          455 FPNAQQLQRSSCFMIRNLVA  474 (508)
Q Consensus       455 h~~~~~vq~~A~~aL~nL~~  474 (508)
                        .++.+++.|+|+|.||+.
T Consensus       234 --~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          234 --ENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             --SSSHHHHTHHHHHHTTC-
T ss_pred             --CCHHHHHHHHHHHHHHhc
Confidence              467999999999999974

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.93  E-value=1.6e-24  Score=208.81  Aligned_cols=240  Identities=19%  Similarity=0.286  Sum_probs=212.0

Q ss_pred             CcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCc-chhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCh
Q 010533          173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQ-STETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE  251 (508)
Q Consensus       173 Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~-~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e  251 (508)
                      |++|.|+.+|++.   +.+++..|+++|..++.+.+ .+..+++.|+++.|+++|.+  ++.+++..++++|++++..++
T Consensus         2 ~~i~~L~~~L~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~   76 (252)
T 4hxt_A            2 NDVEKLVKLLTST---DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS--TDSEVQKEAARALANIASGPD   76 (252)
T ss_dssp             CHHHHHHHHTTCS---CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCH
T ss_pred             CcHHHHHHHHcCC---CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHcCCh
Confidence            6899999999884   68899999999999987664 67888999999999999985  479999999999999988889


Q ss_pred             hhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHH
Q 010533          252 VVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLI  331 (508)
Q Consensus       252 ~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~  331 (508)
                      .++..+++.|+++.|+.+|++++.+++..++++|.+|+..++         ++...+.+.|+++.|+++|++. ++.++.
T Consensus        77 ~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~---------~~~~~~~~~~~i~~L~~~l~~~-~~~~~~  146 (252)
T 4hxt_A           77 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD---------EAIKAIVDAGGVEVLVKLLTST-DSEVQK  146 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCH---------HHHHHHHHTTHHHHHHHHTTCS-CHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH---------HHHHHHHHCCCHHHHHHHHcCC-CHHHHH
Confidence            999999999999999999998777899999999999995432         3455677889999999999864 678999


Q ss_pred             HHHHHHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHh
Q 010533          332 SASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSA  409 (508)
Q Consensus       332 ~a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~  409 (508)
                      .++++|++|+. +++.+..+.+.|+++.|+.+|.+.    +..++..++.+|.+|+. +++.+..+++.|+++.|++++.
T Consensus       147 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~----~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~  222 (252)
T 4hxt_A          147 EAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST----DSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLT  222 (252)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGG
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCC----CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHC
Confidence            99999999998 556678899999999999999853    34899999999999986 6788889999999999999998


Q ss_pred             ccCCCHHHHHHHHHHHHHHhcCCh
Q 010533          410 RFSDDASVLQEVMSIITVLSLRSP  433 (508)
Q Consensus       410 ~~~~~~~v~e~a~~aL~~La~~~~  433 (508)
                        .+++.+++.|+++|.+|+...+
T Consensus       223 --~~~~~v~~~a~~~L~~l~~~~~  244 (252)
T 4hxt_A          223 --STDSEVQKEAQRALENIKSGGW  244 (252)
T ss_dssp             --CSCHHHHHHHHHHHHHHHHTCB
T ss_pred             --CCcHHHHHHHHHHHHHHHcCCC
Confidence              6789999999999999997544

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.92  E-value=2.9e-24  Score=208.14  Aligned_cols=237  Identities=18%  Similarity=0.250  Sum_probs=206.5

Q ss_pred             CcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhc-CCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCh
Q 010533          173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVH-DVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE  251 (508)
Q Consensus       173 Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~-~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e  251 (508)
                      ..+|.++.+|++.   +.+++..|+++|..++. +.+.+..+++.|+++.|+++|.+  ++.+++..++++|++++..++
T Consensus        12 ~~~~~~~~~L~s~---~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~   86 (252)
T 4db8_A           12 SELPQMTQQLNSD---DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGN   86 (252)
T ss_dssp             CSHHHHHHHHHSS---CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC--SCHHHHHHHHHHHHHHTTSCH
T ss_pred             chHHHHHHHHcCC---CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCH
Confidence            4589999999984   67888889999966543 34556788999999999999985  469999999999999998889


Q ss_pred             hhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHH
Q 010533          252 VVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLI  331 (508)
Q Consensus       252 ~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~  331 (508)
                      .++..+++.|+++.|+.+|++++..++..|+++|.+|+.+++.+         ...+.+.|+++.|+.+|++. ++.++.
T Consensus        87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~---------~~~~~~~~~i~~L~~lL~~~-~~~v~~  156 (252)
T 4db8_A           87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ---------IQAVIDAGALPALVQLLSSP-NEQILQ  156 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH---------HHHHHHTTHHHHHHHGGGCS-CHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchH---------HHHHHHCCCHHHHHHHHhCC-CHHHHH
Confidence            99999999999999999999987789999999999999766432         24677889999999999874 678999


Q ss_pred             HHHHHHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCchhHHHHHhCCcHHHHHHHHh
Q 010533          332 SASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSA  409 (508)
Q Consensus       332 ~a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~Ggl~~Lv~lL~  409 (508)
                      .++++|++|+. ++++...+++.|+++.|+++|.+.    +..++..++.+|.+|+ ++++++..+++.|+++.|+.+|.
T Consensus       157 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~  232 (252)
T 4db8_A          157 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP----NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS  232 (252)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS----SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTT
T ss_pred             HHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCC----CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhC
Confidence            99999999998 567788899999999999999863    3489999999999998 57788999999999999999998


Q ss_pred             ccCCCHHHHHHHHHHHHHHhc
Q 010533          410 RFSDDASVLQEVMSIITVLSL  430 (508)
Q Consensus       410 ~~~~~~~v~e~a~~aL~~La~  430 (508)
                        .+++.+++.|+++|.+|+.
T Consensus       233 --~~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          233 --HENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             --CSSSHHHHTHHHHHHTTC-
T ss_pred             --CCCHHHHHHHHHHHHHHhc
Confidence              6688999999999999983

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.91  E-value=1.2e-23  Score=202.77  Aligned_cols=204  Identities=14%  Similarity=0.117  Sum_probs=172.2

Q ss_pred             ChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhh
Q 010533          218 GPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVV  297 (508)
Q Consensus       218 gi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~  297 (508)
                      .+|.+|++|.+...+.+++..++++|.++|..++.+|..+++.|+||+|+++|++++.++++.|+|+|++|+.+++    
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~----   84 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN----   84 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH----
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH----
Confidence            5899999998654455899999999999998899999999999999999999999888999999999999997542    


Q ss_pred             hhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhc---cC-------
Q 010533          298 ASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDD---SG-------  367 (508)
Q Consensus       298 ~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~---~~-------  367 (508)
                           ++...|++.|+||+|+++|++..+.++++.++++||+|+..++++..|++ +|+++|++++..   ..       
T Consensus        85 -----~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~  158 (233)
T 3tt9_A           85 -----DNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPK  158 (233)
T ss_dssp             -----HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCC
T ss_pred             -----HHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCccccccc
Confidence                 35567889999999999998655778999999999999999999999997 579999886531   10       


Q ss_pred             --CCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCCc-HHHHHHHHhcc----CCCHHHHHHHHHHHHHHhcC
Q 010533          368 --LQGNKTVARICCSLLSKLAG-SDSNKSAIIENGG-MDKLIVVSARF----SDDASVLQEVMSIITVLSLR  431 (508)
Q Consensus       368 --~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~Gg-l~~Lv~lL~~~----~~~~~v~e~a~~aL~~La~~  431 (508)
                        ...+.+++.++.++|+||+. ++++|..|++++| |+.|+.+++..    ..+...+|+|+++|+||+.+
T Consensus       159 ~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          159 ANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             ccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence              01245899999999999987 5699999998865 79999999742    22457899999999999975

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.91  E-value=9.8e-23  Score=223.81  Aligned_cols=327  Identities=13%  Similarity=0.076  Sum_probs=261.9

Q ss_pred             HHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHH-CCcHHHHHHHHhcccCCCHHHHHHHHH
Q 010533          120 LIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATK-NGGVELVCSICYKMRCGSKRVLDSCLK  198 (508)
Q Consensus       120 v~~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~-~Gavp~Lv~lL~~~~~~~~~~~~~al~  198 (508)
                      +....+.++.++.+.       +.+....|++.|.-+..   ++.-|..+++ .|.++.|+.+++..  .+..+...++.
T Consensus       332 i~~La~~~~~~L~~~-------~~~~~~~AvEgLaYLSl---~~~VKe~L~~d~~~L~~Lv~llk~~--~d~s~~Ygal~  399 (778)
T 3opb_A          332 LKQLSEIFINAISRR-------IVPKVEMSVEALAYLSL---KASVKIMIRSNESFTEILLTMIKSQ--KMTHCLYGLLV  399 (778)
T ss_dssp             HHHHHHHHHHHTTTC-------CHHHHHHHHHHHHHHTT---SSHHHHHHHHCHHHHHHHHHHHTTT--CCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHhC---CHHHHHHHHhCHHHHHHHHHHHhCC--CCchHHHHHHH
Confidence            556677777777664       55668889999999977   5666666666 55699999999863  46788999999


Q ss_pred             HHHHhhcCCc---------------------------------------chhHHHhcCChHHHHHHHhcCCCCHHHHHHH
Q 010533          199 TMALLVHDVQ---------------------------------------STETFRTGGGPKLLVNILIDGNEDPEILNSG  239 (508)
Q Consensus       199 aLa~l~~~~~---------------------------------------~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a  239 (508)
                      +|++++++.+                                       .+..+.+.|+++.|+.++.+  +++.+++.+
T Consensus       400 IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S--~s~~~re~A  477 (778)
T 3opb_A          400 IMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHN--LSPNCKQQV  477 (778)
T ss_dssp             HHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGG--SCHHHHHHH
T ss_pred             HHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcC--CCHHHHHHH
Confidence            9999987432                                       12344678999999999975  578999999


Q ss_pred             HHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChH---HHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHH
Q 010533          240 FAVVAASATGNEVVKESYMELKIDELILEILSRQRND---SIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARA  316 (508)
Q Consensus       240 ~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~---~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~  316 (508)
                      +++|.+++ .++.+|..+++.|++++|+.+|.++...   ...+|+++|.+|+...++...|++..       -.|+|++
T Consensus       478 ~~aL~nLS-~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~-------~~~aI~p  549 (778)
T 3opb_A          478 VRIIYNIT-RSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYS-------ALNAIPF  549 (778)
T ss_dssp             HHHHHHHH-TSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSC-------STTHHHH
T ss_pred             HHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCc-------cccchHH
Confidence            99999996 5688999999999999999999987542   77899999999997776665553210       1389999


Q ss_pred             HHHHHhcCCCh-------------hHHHHHHHHHHHhhcCh-----hhHhHHhhc-CCHHHHHHHHhccCCCCcHHHHHH
Q 010533          317 LVHSLHAGLSS-------------PSLISASIALKAVAVND-----EICKSVAEN-GGIDALLRCIDDSGLQGNKTVARI  377 (508)
Q Consensus       317 Lv~lL~~~~d~-------------~~~~~a~~aL~~La~~~-----e~~~~i~e~-Ggi~~Lv~lL~~~~~~~~~~v~~~  377 (508)
                      |+++|..+++.             -...+++.||.|||..+     +.++.|++. |+++.|.++|.+.    +..++++
T Consensus       550 Lv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~----n~~VrrA  625 (778)
T 3opb_A          550 LFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE----NVPLQRS  625 (778)
T ss_dssp             HHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS----SHHHHHH
T ss_pred             HHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC----CHHHHHH
Confidence            99999832211             12678999999999865     457888885 9999999999863    3489999


Q ss_pred             HHHHHHHhhCCchhH-HHHHhC------CcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc-CcHHHHH
Q 010533          378 CCSLLSKLAGSDSNK-SAIIEN------GGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEA-GSGDLAI  449 (508)
Q Consensus       378 al~aL~~La~~~~~k-~~Iv~~------Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~-G~i~~Lv  449 (508)
                      |+.+|.||+.+++.. ..+.+.      +++++||.++.  +++..+++.|+|+|++++..++.+++.+++. ++++.++
T Consensus       626 A~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~--s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll  703 (778)
T 3opb_A          626 TLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQ--LSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAI  703 (778)
T ss_dssp             HHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHc--CCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHH
Confidence            999999999888764 344322      34889999998  7899999999999999987799999999998 8999999


Q ss_pred             HHHHcCCCcHHHHHHHHHHHHHhhh
Q 010533          450 QAMLKFPNAQQLQRSSCFMIRNLVA  474 (508)
Q Consensus       450 ~~L~~h~~~~~vq~~A~~aL~nL~~  474 (508)
                      .+++.-.++.+++..+..+++||+.
T Consensus       704 ~lL~~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          704 QVFADQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHhccCCCHHHHHHHHHHHHHHHH
Confidence            9998744678999999999999995

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.90  E-value=3.1e-23  Score=199.91  Aligned_cols=200  Identities=15%  Similarity=0.132  Sum_probs=170.0

Q ss_pred             cHHHHHHHHhcCCh--HHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHH
Q 010533          262 IDELILEILSRQRN--DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKA  339 (508)
Q Consensus       262 ~i~~Lv~lL~~~~~--~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~  339 (508)
                      .++.|+++|++++.  .++..|+++|.+|+..++         ++.+.+++.|+||+|+++|++. +++++..++|+|++
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~---------~~r~~I~~~G~Ip~LV~lL~s~-~~~vq~~Aa~aL~n   78 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKS---------EARKRVNQLRGILKLLQLLKVQ-NEDVQRAVCGALRN   78 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCH---------HHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCc---------HHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence            58999999998876  788899999999996442         3445677999999999999874 68899999999999


Q ss_pred             hhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHh----c----
Q 010533          340 VAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSA----R----  410 (508)
Q Consensus       340 La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~----~----  410 (508)
                      |+. +++++..|++.|||++|+++|....   +.+++++++++|++|+..+++|..|++ +|+|+|++++.    .    
T Consensus        79 La~~~~~nk~~I~~~GaI~~Lv~lL~~~~---~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~  154 (233)
T 3tt9_A           79 LVFEDNDNKLEVAELNGVPRLLQVLKQTR---DLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEG  154 (233)
T ss_dssp             HHTTCHHHHHHHHHTTHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGG
T ss_pred             HHhCCHHHHHHHHHcCCHHHHHHHHccCC---CHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCccc
Confidence            998 6899999999999999999998532   348999999999999999999999997 57999998652    1    


Q ss_pred             ------cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc-CcHHHHHHHHHc----CCCcHHHHHHHHHHHHHhhhc
Q 010533          411 ------FSDDASVLQEVMSIITVLSLRSPENAARAMEA-GSGDLAIQAMLK----FPNAQQLQRSSCFMIRNLVAR  475 (508)
Q Consensus       411 ------~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~-G~i~~Lv~~L~~----h~~~~~vq~~A~~aL~nL~~~  475 (508)
                            +..++.++++|.++|+||+..++++++.+.+. |+++.|+.+++.    ...+.+.+++|..+|+||+.|
T Consensus       155 ~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          155 DYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             GCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             ccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence                  12467999999999999998889999999987 557999999875    222457789999999999875

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.90  E-value=4e-22  Score=187.89  Aligned_cols=198  Identities=19%  Similarity=0.245  Sum_probs=174.5

Q ss_pred             HcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHH
Q 010533          259 ELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALK  338 (508)
Q Consensus       259 ~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~  338 (508)
                      ..|+.+.|+.+|++.+.+++..|+++|.+|+..++         ++.+.+.+.|+++.|+++|++. ++.++..++++|+
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~---------~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~   79 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGN---------EQIQAVIDAGALPALVQLLSSP-NEQILQEALWALS   79 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH---------HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCH---------HHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence            45889999999998888899999999999996542         3456778899999999999875 6889999999999


Q ss_pred             Hhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhccCCCHH
Q 010533          339 AVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDAS  416 (508)
Q Consensus       339 ~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~  416 (508)
                      +|+. +++++..+++.|+++.|+.+|.+.    +..++..++++|++|+. +++.+..+++.|+++.|+++|.  .+++.
T Consensus        80 ~l~~~~~~~~~~i~~~g~i~~L~~lL~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~  153 (210)
T 4db6_A           80 NIASGGNEQIQAVIDAGALPALVQLLSSP----NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS--SPNEQ  153 (210)
T ss_dssp             HHTTSCHHHHHHHHHTTCHHHHHHHTTCS----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT--CSCHH
T ss_pred             HHhcCCcHHHHHHHHCCCHHHHHHHHcCC----cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHc--CCCHH
Confidence            9995 778889999999999999999864    35899999999999985 6677888999999999999998  66899


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhh
Q 010533          417 VLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA  474 (508)
Q Consensus       417 v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~  474 (508)
                      +++.++++|.+|+..+++++..+.+.|+++.|++++..  .++.+++.|+++|++|+.
T Consensus       154 v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          154 ILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH--ENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGC--SCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHhc
Confidence            99999999999998889999999999999999999963  568999999999999974

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.90  E-value=5.5e-22  Score=217.92  Aligned_cols=281  Identities=12%  Similarity=0.097  Sum_probs=221.6

Q ss_pred             HHHHHHHHHHHHhhcCCcchhHHHhcC-ChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCh------------------
Q 010533          191 RVLDSCLKTMALLVHDVQSTETFRTGG-GPKLLVNILIDGNEDPEILNSGFAVVAASATGNE------------------  251 (508)
Q Consensus       191 ~~~~~al~aLa~l~~~~~~~~~i~~~g-gi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e------------------  251 (508)
                      +-+.+|++.|++++.+.+-|+.+++.. .++.|+++|+. ..+..+...++.+|.|++...+                  
T Consensus       349 ~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~-~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~  427 (778)
T 3opb_A          349 PKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKS-QKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXX  427 (778)
T ss_dssp             HHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTT-TCCTTHHHHHHHHHHHTTCCCCCCCCCCC-----------
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccc
Confidence            347789999999988877788888765 49999999975 3466788999999999976322                  


Q ss_pred             --------------------hhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhc
Q 010533          252 --------------------VVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKI  311 (508)
Q Consensus       252 --------------------~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~  311 (508)
                                          .+|..+.++|+++.|+.++++.++.++..|+|+|.+|+.++++|.          .+++.
T Consensus       428 ~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~----------~lvqq  497 (778)
T 3opb_A          428 XXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIP----------QLAQQ  497 (778)
T ss_dssp             -------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHH----------HHHHT
T ss_pred             cCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHH----------HHHHC
Confidence                                167778899999999999999888899999999999998766553          67788


Q ss_pred             CCHHHHHHHHhcCCCh--hHHHHHHHHHHHhhcChhhHhHHh--h-cCCHHHHHHHHhccCCCC---------cHHH-HH
Q 010533          312 GIARALVHSLHAGLSS--PSLISASIALKAVAVNDEICKSVA--E-NGGIDALLRCIDDSGLQG---------NKTV-AR  376 (508)
Q Consensus       312 g~i~~Lv~lL~~~~d~--~~~~~a~~aL~~La~~~e~~~~i~--e-~Ggi~~Lv~lL~~~~~~~---------~~~v-~~  376 (508)
                      |++++|+.+|.++++.  .+...++.||.+|+...+....+.  . .|+|++|+++|...++..         -..+ ..
T Consensus       498 Gal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~f  577 (778)
T 3opb_A          498 GAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNY  577 (778)
T ss_dssp             THHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHH
T ss_pred             CCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHH
Confidence            9999999999987533  278899999999986443333231  1 389999999998322211         0012 56


Q ss_pred             HHHHHHHHhhCCc-----hhHHHHHhC-CcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhH-HHHHhcC------
Q 010533          377 ICCSLLSKLAGSD-----SNKSAIIEN-GGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENA-ARAMEAG------  443 (508)
Q Consensus       377 ~al~aL~~La~~~-----~~k~~Iv~~-Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~-~~i~~~G------  443 (508)
                      +|+.+|.|||+.+     +.+..|++. |+++.|..+|.  +++..+++.||++|+||+. +++.. +.+.+.+      
T Consensus       578 eAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~--s~n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~~~~~~~  654 (778)
T 3opb_A          578 EALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLML--DENVPLQRSTLELISNMMS-HPLTIAAKFFNLENPQSLR  654 (778)
T ss_dssp             HHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGG--CSSHHHHHHHHHHHHHHHT-SGGGTGGGTSCCSSHHHHH
T ss_pred             HHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHh--CCCHHHHHHHHHHHHHHhC-CcHHHHHHHHhhcCchhhc
Confidence            9999999999765     457888985 99999999998  6789999999999999996 77764 3554322      


Q ss_pred             cHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHhcc
Q 010533          444 SGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMVS  487 (508)
Q Consensus       444 ~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~g  487 (508)
                      .++.|+.++.  .++..+|+.|+|||.|+++.++..++.+++..
T Consensus       655 rL~lLV~Ll~--s~D~~~r~AAagALAnLts~~~~ia~~ll~~~  696 (778)
T 3opb_A          655 NFNILVKLLQ--LSDVESQRAVAAIFANIATTIPLIAKELLTKK  696 (778)
T ss_dssp             HHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCH
T ss_pred             cHHHHHHHHc--CCCHHHHHHHHHHHHHhcCCChHHHHHHHHcc
Confidence            4778999984  47899999999999999888899999999874

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.89  E-value=1.2e-21  Score=184.62  Aligned_cols=202  Identities=19%  Similarity=0.264  Sum_probs=174.9

Q ss_pred             hHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcC
Q 010533          211 ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLT  290 (508)
Q Consensus       211 ~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~  290 (508)
                      +.....++.+.|+.+|.  +++.+++..++++|++++..++.++..+++.|+++.|+.+|++++..++..|+++|.+|+.
T Consensus         6 ~~~~~~~~~~~l~~LL~--s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~   83 (210)
T 4db6_A            6 HHHHHGSELPQMVQQLN--SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS   83 (210)
T ss_dssp             -------CHHHHHHHTT--CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             ccccccchhHHHHHHhc--CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence            34556788999999997  4689999999999999998899999999999999999999998877899999999999996


Q ss_pred             CCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCC
Q 010533          291 PDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQ  369 (508)
Q Consensus       291 ~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~  369 (508)
                      +++         ++...+.+.|+++.|+.+|++. ++.++..++++|++|+. +++.+..+++.|+++.|+++|.+.   
T Consensus        84 ~~~---------~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---  150 (210)
T 4db6_A           84 GGN---------EQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP---  150 (210)
T ss_dssp             SCH---------HHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS---
T ss_pred             CCc---------HHHHHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC---
Confidence            552         3455677899999999999875 68899999999999996 567778899999999999999863   


Q ss_pred             CcHHHHHHHHHHHHHhhCC-chhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010533          370 GNKTVARICCSLLSKLAGS-DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL  430 (508)
Q Consensus       370 ~~~~v~~~al~aL~~La~~-~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~  430 (508)
                       +..++..++++|.+|+.. ++++..+++.|+++.|++++.  .+++.+++.|+++|.+|+.
T Consensus       151 -~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~--~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          151 -NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS--HENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             -CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGG--CSCHHHHHHHHHHHHHHCC
T ss_pred             -CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHh--CCCHHHHHHHHHHHHHHhc
Confidence             348999999999999875 789999999999999999998  6789999999999999984

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.85  E-value=5.3e-20  Score=184.10  Aligned_cols=224  Identities=13%  Similarity=0.157  Sum_probs=176.6

Q ss_pred             HHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHH-HHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcC
Q 010533          234 EILNSGFAVVAASATGNEVVKESYMELKIDELILE-ILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIG  312 (508)
Q Consensus       234 ~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~-lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g  312 (508)
                      +-...++..|..++. +.+|...|.+.|++++|+. +|.+++..++..|+|+|.+++.+++         +..+.+++.|
T Consensus        55 e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~---------~~~~~vv~~g  124 (296)
T 1xqr_A           55 QEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVA---------AIQEQVLGLG  124 (296)
T ss_dssp             HHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCH---------HHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH---------HHHHHHHHCC
Confidence            456678888888864 5568888999999999999 9998877899999999999997653         2344566899


Q ss_pred             CHHHHHHHHhcCCChhHHHHHHHHHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCch
Q 010533          313 IARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDS  390 (508)
Q Consensus       313 ~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La-~~~~  390 (508)
                      ++++|+.+|++.++..++..++|+|++|+. ++...+.+.+.||++.|+.+|.+.    +..++..++++|++|+ ++++
T Consensus       125 ~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~----d~~v~~~A~~aLs~L~~~~~~  200 (296)
T 1xqr_A          125 ALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ----VQKLKVKSAFLLQNLLVGHPE  200 (296)
T ss_dssp             HHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS----CHHHHHHHHHHHHHHHHHCGG
T ss_pred             CHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC----CHHHHHHHHHHHHHHHhCChH
Confidence            999999999975567899999999999997 456677899999999999999863    3589999999999997 4688


Q ss_pred             hHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc--CcHHHH---HHHHHcCCCcHHHHHHH
Q 010533          391 NKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEA--GSGDLA---IQAMLKFPNAQQLQRSS  465 (508)
Q Consensus       391 ~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~--G~i~~L---v~~L~~h~~~~~vq~~A  465 (508)
                      .+..+++.|++++|+.+|.  ++++.+++.++.+|.+|+...+.........  .....|   .+.++.|..+..+-+.+
T Consensus       201 ~~~~vv~~g~i~~Lv~LL~--~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~  278 (296)
T 1xqr_A          201 HKGTLCSMGMVQQLVALVR--TEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFC  278 (296)
T ss_dssp             GHHHHHHTTHHHHHHHHHT--SCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHc--CCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence            9999999999999999998  6788999999999999997666554443321  122222   33344454344555566


Q ss_pred             HHHHHHhh
Q 010533          466 CFMIRNLV  473 (508)
Q Consensus       466 ~~aL~nL~  473 (508)
                      ...|.++.
T Consensus       279 ~~il~~~f  286 (296)
T 1xqr_A          279 EKLLQTCF  286 (296)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHc
Confidence            66666654

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.84  E-value=1.8e-19  Score=180.29  Aligned_cols=183  Identities=14%  Similarity=0.178  Sum_probs=158.8

Q ss_pred             HHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHH-HHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHH
Q 010533          190 KRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVN-ILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILE  268 (508)
Q Consensus       190 ~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~-lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~  268 (508)
                      .+-...|+..|..++.+.++...|...||++.|+. +|.  ++++.+++.|+|+|++++..++.+++.+++.|++++|+.
T Consensus        54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~--s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~  131 (296)
T 1xqr_A           54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLE--AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR  131 (296)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTT--CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence            34566788888888876566678899999999999 997  468999999999999999999999999999999999999


Q ss_pred             HHhcC-ChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc-Chhh
Q 010533          269 ILSRQ-RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEI  346 (508)
Q Consensus       269 lL~~~-~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~-~~e~  346 (508)
                      +|++. +..++++|+|+|++|+.+...         ..+.+.+.|++++|+.+|++. +..++..+||+|++|+. +++.
T Consensus       132 LL~~~~~~~v~~~A~~ALsnl~~~~~~---------~~~~~~~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~~  201 (296)
T 1xqr_A          132 LLDRDACDTVRVKALFAISCLVREQEA---------GLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEH  201 (296)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHHHTTCHH---------HHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGG
T ss_pred             HHccCCCHHHHHHHHHHHHHHHcCCcH---------HHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChHH
Confidence            99975 558899999999999976532         344677889999999999974 78899999999999987 6788


Q ss_pred             HhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC
Q 010533          347 CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGS  388 (508)
Q Consensus       347 ~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~  388 (508)
                      ++.+++.|+++.|+.+|... +   ..+++.++.+|++|+..
T Consensus       202 ~~~vv~~g~i~~Lv~LL~~~-d---~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          202 KGTLCSMGMVQQLVALVRTE-H---SPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             HHHHHHTTHHHHHHHHHTSC-C---STHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHcCC-C---hhHHHHHHHHHHHHHhC
Confidence            99999999999999999863 2   27999999999999865

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.71  E-value=5.3e-15  Score=158.95  Aligned_cols=343  Identities=12%  Similarity=0.084  Sum_probs=254.6

Q ss_pred             ChHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHH
Q 010533          118 NPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCL  197 (508)
Q Consensus       118 ~~v~~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al  197 (508)
                      ..+.+.++.|..-+++..      -.++-+.|+..|+.+++.  .+   .. +.++++|.|+..|++.. .|.++...++
T Consensus        17 qs~~etI~~L~~Rl~~~t------l~eDRR~Av~~Lk~~sk~--y~---~~-Vg~~~l~~li~~L~~d~-~D~e~v~~~L   83 (651)
T 3grl_A           17 HTEAETIQKLCDRVASST------LLDDRRNAVRALKSLSKK--YR---LE-VGIQAMEHLIHVLQTDR-SDSEIIGYAL   83 (651)
T ss_dssp             -CHHHHHHHHHHHHHHCC------SHHHHHHHHHHHHHTTTT--TT---TH-HHHHTHHHHHHHHHSCT-TCHHHHHHHH
T ss_pred             CChhhHHHHHHHHHhhcc------chhHHHHHHHHHHHHHHH--hH---HH-hhhhhHHHHHHHHhccc-ccHHHHHHHH
Confidence            336677888877776642      578899999999999765  33   23 34678999999998864 6789999999


Q ss_pred             HHHHHhhcCCcc------------------hhHHH-hcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChh-hHHHH
Q 010533          198 KTMALLVHDVQS------------------TETFR-TGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV-VKESY  257 (508)
Q Consensus       198 ~aLa~l~~~~~~------------------~~~i~-~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~-nr~~i  257 (508)
                      .+|..+....+.                  .+.|+ +.++++.|+.+|+  .++-.++..++.+|..+|...+. +++.|
T Consensus        84 etL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~--~~df~vR~~alqlL~~L~~~r~~~~Q~~I  161 (651)
T 3grl_A           84 DTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLE--EFDFHVRWPGVKLLTSLLKQLGPQVQQII  161 (651)
T ss_dssp             HHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTT--CCCHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             HHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhc--CccHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            999877643321                  12333 3578999999997  46889999999999999987776 78888


Q ss_pred             HHc-CcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHH-hcCCHHHHHHHHhcCC---ChhHHHH
Q 010533          258 MEL-KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-KIGIARALVHSLHAGL---SSPSLIS  332 (508)
Q Consensus       258 ~~~-G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~-~~g~i~~Lv~lL~~~~---d~~~~~~  332 (508)
                      ..+ +||+.|+.+|....+.++-++..+|.+|+.++          ...++++ -.|+++.|+++++...   ...++.+
T Consensus       162 l~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n----------~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~D  231 (651)
T 3grl_A          162 LVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSN----------GAIQKIVAFENAFERLLDIITEEGNSDGGIVVED  231 (651)
T ss_dssp             HHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTC----------HHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHH
T ss_pred             HhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCC----------HHHHHHHHHhccHHHHHHHHHhcCCCccchhHHH
Confidence            866 99999999998765444445888999999755          2445555 5699999999999743   1356788


Q ss_pred             HHHHHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCC--cHHHHHH---HHHHHHHhhCC-------chhHHHHHhCC
Q 010533          333 ASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQG--NKTVARI---CCSLLSKLAGS-------DSNKSAIIENG  399 (508)
Q Consensus       333 a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~--~~~v~~~---al~aL~~La~~-------~~~k~~Iv~~G  399 (508)
                      ....|.+|.. |..|...+.|.|+++.|..+|....+..  ......+   ++.+++-|...       ..|+.++.+.|
T Consensus       232 CL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g  311 (651)
T 3grl_A          232 CLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCG  311 (651)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCC
Confidence            8888999998 5567888999999999999987432210  0113334   66677777532       25788999999


Q ss_pred             cHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC-----cHHHHHHH----HHcCCCcHHHHHHHHHHHH
Q 010533          400 GMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAG-----SGDLAIQA----MLKFPNAQQLQRSSCFMIR  470 (508)
Q Consensus       400 gl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G-----~i~~Lv~~----L~~h~~~~~vq~~A~~aL~  470 (508)
                      +++.|++++....-...++..|+.+++.+..+|+.++..+....     ..+.++.+    +.. .....++-.||..+.
T Consensus       312 ~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~-~~~~~lR~Aa~~cl~  390 (651)
T 3grl_A          312 LLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNE-RQPFVLRCAVLYCFQ  390 (651)
T ss_dssp             HHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCT-TSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcc-cccHHHHHHHHHHHH
Confidence            99999999874434678999999999999999999999988653     12333333    322 234677888999999


Q ss_pred             HhhhcCccchHHHHhc
Q 010533          471 NLVARNPENSFCSVMV  486 (508)
Q Consensus       471 nL~~~~~e~~~~~~~~  486 (508)
                      ....+|++.+..++..
T Consensus       391 ay~~~N~~~Q~~i~~~  406 (651)
T 3grl_A          391 CFLYKNQKGQGEIVST  406 (651)
T ss_dssp             HHHTTCHHHHHHHHHT
T ss_pred             HHHhCCHHHHHHHHHh
Confidence            9999998776666643

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.61  E-value=5.2e-14  Score=151.28  Aligned_cols=300  Identities=12%  Similarity=0.105  Sum_probs=230.2

Q ss_pred             cHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChh-
Q 010533          174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV-  252 (508)
Q Consensus       174 avp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~-  252 (508)
                      .|+.|++=+++..  -.+-...|+..|-++..+.   +.-+.++|++.|+..|++..+|.++...++.+|.++...++. 
T Consensus        22 tI~~L~~Rl~~~t--l~eDRR~Av~~Lk~~sk~y---~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~   96 (651)
T 3grl_A           22 TIQKLCDRVASST--LLDDRRNAVRALKSLSKKY---RLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE   96 (651)
T ss_dssp             HHHHHHHHHHHCC--SHHHHHHHHHHHHHTTTTT---TTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred             HHHHHHHHHhhcc--chhHHHHHHHHHHHHHHHh---HHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence            4777777776652  3455667888888887654   566778999999999999889999999999999886554332 


Q ss_pred             ----------------hHHHHH-HcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHh-cCCH
Q 010533          253 ----------------VKESYM-ELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK-IGIA  314 (508)
Q Consensus       253 ----------------nr~~i~-~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~-~g~i  314 (508)
                                      +.+.|+ +.+.|+.|+++|++.+-.+..++...|..|+....        ..+.+.|.. .+||
T Consensus        97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~--------~~~Q~~Il~~p~gi  168 (651)
T 3grl_A           97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLG--------PQVQQIILVSPMGV  168 (651)
T ss_dssp             -----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSH--------HHHHHHHHHSTTHH
T ss_pred             cccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCc--------HHHHHHHHhCcccH
Confidence                            334555 55899999999988766788889999999986432        235667774 4999


Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhh-cCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCchhH
Q 010533          315 RALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAE-NGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNK  392 (508)
Q Consensus       315 ~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e-~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k  392 (508)
                      +.|+++|.+.. ..++.++...|.+|+..+...++++. .|+++.|++++.......-..++..|+.+|.+|. .|..|+
T Consensus       169 ~~Lv~lL~d~r-E~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ  247 (651)
T 3grl_A          169 SRLMDLLADSR-EVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQ  247 (651)
T ss_dssp             HHHHGGGGCSS-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHhCch-HHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHH
Confidence            99999998642 44666788889999997777766664 5999999999986432112478899999999997 477899


Q ss_pred             HHHHhCCcHHHHHHHHhccCC----CHHHHHH---HHHHHHHHhcC------ChhhHHHHHhcCcHHHHHHHHHcCCCcH
Q 010533          393 SAIIENGGMDKLIVVSARFSD----DASVLQE---VMSIITVLSLR------SPENAARAMEAGSGDLAIQAMLKFPNAQ  459 (508)
Q Consensus       393 ~~Iv~~Ggl~~Lv~lL~~~~~----~~~v~e~---a~~aL~~La~~------~~~~~~~i~~~G~i~~Lv~~L~~h~~~~  459 (508)
                      ..+.+.|+++.|..+|.-...    .+....+   +..++..|+..      ++.|+.++.+.|+++.|++++....-..
T Consensus       248 ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~  327 (651)
T 3grl_A          248 NFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPA  327 (651)
T ss_dssp             HHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCH
T ss_pred             HHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCH
Confidence            999999999999999862111    1222334   66677777765      4578999999999999999987544456


Q ss_pred             HHHHHHHHHHHHhhhcCccchHHHHhcc
Q 010533          460 QLQRSSCFMIRNLVARNPENSFCSVMVS  487 (508)
Q Consensus       460 ~vq~~A~~aL~nL~~~~~e~~~~~~~~g  487 (508)
                      .++..|..++..+..+|+.+...|....
T Consensus       328 ~i~~~Al~tla~~irgN~~~Q~~fa~~~  355 (651)
T 3grl_A          328 DILTETINTVSEVIRGCQVNQDYFASVN  355 (651)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHCE
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHhhcc
Confidence            7888999999999999999999988654

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.13  E-value=4.9e-10  Score=124.43  Aligned_cols=200  Identities=12%  Similarity=0.054  Sum_probs=150.7

Q ss_pred             cHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhh
Q 010533          262 IDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA  341 (508)
Q Consensus       262 ~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La  341 (508)
                      .|.++++.|++.+...+..||++|.+|+.+.          ...+.+...|++.+++.-+-..++.+++..++++|+||+
T Consensus        35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~----------~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~  104 (684)
T 4gmo_A           35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDA----------KCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLA  104 (684)
T ss_dssp             TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSH----------HHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCc----------HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            4555778899887788899999999999643          233455677888887665444457889999999999999


Q ss_pred             cC--hhhHhHHhhcCCHHHHHHHHhccCCC-----------C------cHHHHHHHHHHHHHhhC-CchhHHHHHhCCcH
Q 010533          342 VN--DEICKSVAENGGIDALLRCIDDSGLQ-----------G------NKTVARICCSLLSKLAG-SDSNKSAIIENGGM  401 (508)
Q Consensus       342 ~~--~e~~~~i~e~Ggi~~Lv~lL~~~~~~-----------~------~~~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl  401 (508)
                      ..  .+.|..+++.|++++|+.++....+.           .      -.++..+++.+|++|+. +++....|.+.|++
T Consensus       105 ~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l  184 (684)
T 4gmo_A          105 QEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTI  184 (684)
T ss_dssp             HHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHH
T ss_pred             hhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccH
Confidence            74  68899999999999999998642100           0      02456788999999984 67778889999999


Q ss_pred             HHHHHHHhccC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHH--HHcCCCcHHHHHHHHHHHHHhh
Q 010533          402 DKLIVVSARFS-DDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQA--MLKFPNAQQLQRSSCFMIRNLV  473 (508)
Q Consensus       402 ~~Lv~lL~~~~-~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~--L~~h~~~~~vq~~A~~aL~nL~  473 (508)
                      +.|+..|.... ....++..++.+|..|+..|++....+.+.|.......+  +.++..  ..+..+|+.|+|+.
T Consensus       185 ~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~--~~~~la~giL~Ni~  257 (684)
T 4gmo_A          185 LRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTD--PRAVMACGVLHNVF  257 (684)
T ss_dssp             HHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSC--TTHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCc--HHHHHHHHHHHhHh
Confidence            99999885332 347899999999999999999999999988754322222  333433  33568999999974

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.10  E-value=1.6e-08  Score=98.87  Aligned_cols=252  Identities=14%  Similarity=0.061  Sum_probs=177.8

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHH
Q 010533          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (508)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~  202 (508)
                      +++.|...+.+.       +......|++.|.++.    ++         +++|.|+.+|.+   ++..+...|+++|..
T Consensus        24 ~i~~L~~~L~~~-------~~~vr~~A~~~L~~~~----~~---------~~~~~L~~~l~d---~~~~vR~~A~~aL~~   80 (280)
T 1oyz_A           24 NDDELFRLLDDH-------NSLKRISSARVLQLRG----GQ---------DAVRLAIEFCSD---KNYIRRDIGAFILGQ   80 (280)
T ss_dssp             CHHHHHHHTTCS-------SHHHHHHHHHHHHHHC----CH---------HHHHHHHHHHTC---SSHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHcC-------CHHHHHHHHHHHHccC----Cc---------hHHHHHHHHHcC---CCHHHHHHHHHHHHH
Confidence            466677776654       6676777888887774    22         368999999987   477888888898887


Q ss_pred             hhcCCcchhHHHhcCChHHHHHHHhc---CCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHH
Q 010533          203 LVHDVQSTETFRTGGGPKLLVNILID---GNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQ  279 (508)
Q Consensus       203 l~~~~~~~~~i~~~ggi~~Lv~lL~~---~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~  279 (508)
                      +....         ..++.++.+|..   ..++..++..++++|+.++..++...     ...++.|+..|++.+..+..
T Consensus        81 l~~~~---------~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~  146 (280)
T 1oyz_A           81 IKICK---------KCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRR  146 (280)
T ss_dssp             SCCCT---------TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHH
T ss_pred             hcccc---------ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHH
Confidence            65322         123444444321   24688999999999999864332211     13578888999887778888


Q ss_pred             HHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHH
Q 010533          280 SLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDAL  359 (508)
Q Consensus       280 ~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~L  359 (508)
                      .|+++|..+..                    .++++.|+.+|++ +++.+...++++|+.+...++        ..++.|
T Consensus       147 ~a~~aL~~~~~--------------------~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~~~~--------~~~~~L  197 (280)
T 1oyz_A          147 ATAFAISVIND--------------------KATIPLLINLLKD-PNGDVRNWAAFAININKYDNS--------DIRDCF  197 (280)
T ss_dssp             HHHHHHHTC-----------------------CCHHHHHHHHTC-SSHHHHHHHHHHHHHHTCCCH--------HHHHHH
T ss_pred             HHHHHHHhcCC--------------------HHHHHHHHHHHcC-CCHHHHHHHHHHHHhhccCcH--------HHHHHH
Confidence            89999986642                    2578999999986 467788999999988853221        246778


Q ss_pred             HHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 010533          360 LRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARA  439 (508)
Q Consensus       360 v~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i  439 (508)
                      +.++.+.    +..+...++.+|+.+.          ....++.|+.+|.  .+  .++..++.+|..+.  ++      
T Consensus       198 ~~~l~d~----~~~vR~~A~~aL~~~~----------~~~~~~~L~~~l~--d~--~vr~~a~~aL~~i~--~~------  251 (280)
T 1oyz_A          198 VEMLQDK----NEEVRIEAIIGLSYRK----------DKRVLSVLCDELK--KN--TVYDDIIEAAGELG--DK------  251 (280)
T ss_dssp             HHHTTCS----CHHHHHHHHHHHHHTT----------CGGGHHHHHHHHT--SS--SCCHHHHHHHHHHC--CG------
T ss_pred             HHHhcCC----CHHHHHHHHHHHHHhC----------CHhhHHHHHHHhc--Cc--cHHHHHHHHHHhcC--ch------
Confidence            8888652    3589999999999875          2357899999997  32  38889999998885  22      


Q ss_pred             HhcCcHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 010533          440 MEAGSGDLAIQAMLKFPNAQQLQRSSCFMIR  470 (508)
Q Consensus       440 ~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~  470 (508)
                         ..++.|.+++..+.+ ..+...+..+|.
T Consensus       252 ---~~~~~L~~~l~~~~~-~~~~~~~~~~l~  278 (280)
T 1oyz_A          252 ---TLLPVLDTMLYKFDD-NEIITSAIDKLK  278 (280)
T ss_dssp             ---GGHHHHHHHHTTSSC-CHHHHHHHHHHT
T ss_pred             ---hhhHHHHHHHhcCCC-cHHHHHHHHHhh
Confidence               468889999977654 455556655553

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.08  E-value=1.3e-09  Score=123.70  Aligned_cols=311  Identities=12%  Similarity=0.042  Sum_probs=198.0

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHH-------CCcHHHHHHHHhcccCCCHHHHHH
Q 010533          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATK-------NGGVELVCSICYKMRCGSKRVLDS  195 (508)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~-------~Gavp~Lv~lL~~~~~~~~~~~~~  195 (508)
                      .+..|...+.+.       +......++..|..+|+.  .+..   +..       .+.+|.|+.++++   .+.+++..
T Consensus       129 ll~~L~~~l~~~-------~~~~r~~al~~L~~i~~~--~~~~---~~~~~~~~~~~~il~~l~~~l~~---~~~~vR~~  193 (852)
T 4fdd_A          129 LLPKLCSLLDSE-------DYNTCEGAFGALQKICED--SAEI---LDSDVLDRPLNIMIPKFLQFFKH---SSPKIRSH  193 (852)
T ss_dssp             HHHHHHHHHSCS-------SHHHHHHHHHHHHHHHHH--HTTH---HHHCSSSSCHHHHHHHHTTTTTC---SSHHHHHH
T ss_pred             HHHHHHHHHcCC-------CHHHHHHHHHHHHHHHHH--hHHH---hchhhhcchHHHHHHHHHHHhcC---CCHHHHHH
Confidence            456666666654       566677888999998874  2221   111       2356677776665   47889999


Q ss_pred             HHHHHHHhhcCCcchhHHHh--cCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcC
Q 010533          196 CLKTMALLVHDVQSTETFRT--GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ  273 (508)
Q Consensus       196 al~aLa~l~~~~~~~~~i~~--~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~  273 (508)
                      |+++|..+.....  ..+..  ...++.++.++.  .++.+++..++++|..++...+..-...++ +.++.++.++...
T Consensus       194 A~~aL~~~~~~~~--~~~~~~~~~~l~~l~~~~~--d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~  268 (852)
T 4fdd_A          194 AVACVNQFIISRT--QALMLHIDSFIENLFALAG--DEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQ  268 (852)
T ss_dssp             HHHHHHTTTTTTC--HHHHTSHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCS
T ss_pred             HHHHHHHHHhccc--HHHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCC
Confidence            9999988775432  12211  234566777665  458899999999999987654432111122 4778888888876


Q ss_pred             ChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHh---cCCHHHHHHHHh----------cC-----------CChhH
Q 010533          274 RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK---IGIARALVHSLH----------AG-----------LSSPS  329 (508)
Q Consensus       274 ~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~---~g~i~~Lv~lL~----------~~-----------~d~~~  329 (508)
                      ++.+...|++++..++.....           +.+..   ...++.++..|.          ..           .+..+
T Consensus       269 ~~~vr~~a~e~l~~l~~~~~~-----------~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~v  337 (852)
T 4fdd_A          269 DENVALEACEFWLTLAEQPIC-----------KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNL  337 (852)
T ss_dssp             SHHHHHHHHHHHHHHTTSTTH-----------HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCH
T ss_pred             cHHHHHHHHHHHHHHhcchhH-----------HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchH
Confidence            668888999999998854311           11111   134666766662          11           11235


Q ss_pred             HHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHh
Q 010533          330 LISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSA  409 (508)
Q Consensus       330 ~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~  409 (508)
                      ...++.+|..|+....  ..+.. ..++.+..++.+    .+..++..|+.+|++++......-.-.-.+.++.|+.+|.
T Consensus       338 r~~a~~~L~~la~~~~--~~~~~-~l~~~l~~~l~~----~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~  410 (852)
T 4fdd_A          338 RKCSAAALDVLANVYR--DELLP-HILPLLKELLFH----HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLS  410 (852)
T ss_dssp             HHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHHTC----SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcc--HHHHH-HHHHHHHHHhcC----CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcC
Confidence            6677788888875321  11221 234556666653    2468999999999999864322111112356788888887


Q ss_pred             ccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhc
Q 010533          410 RFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR  475 (508)
Q Consensus       410 ~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~  475 (508)
                        ..++.|+..++++|.+++...+.......-.+.++.+++.|..  +++.|+..|||+|.+++..
T Consensus       411 --d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d--~~~~vr~~a~~aL~~l~~~  472 (852)
T 4fdd_A          411 --DKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD--SNKRVQEAACSAFATLEEE  472 (852)
T ss_dssp             --CSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHH
T ss_pred             --CCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHH
Confidence              6689999999999999985322110011112456778888853  4689999999999999853

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.08  E-value=1.7e-08  Score=98.68  Aligned_cols=240  Identities=8%  Similarity=-0.011  Sum_probs=171.2

Q ss_pred             HHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q 010533          168 VATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASA  247 (508)
Q Consensus       168 ~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~  247 (508)
                      .....+.++.|+.+|.+   ++..++..|+++|..+..          .+.++.|+++|.  .++..++..++++|+.+.
T Consensus        18 ~~~~~~~i~~L~~~L~~---~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~--d~~~~vR~~A~~aL~~l~   82 (280)
T 1oyz_A           18 NQCKKLNDDELFRLLDD---HNSLKRISSARVLQLRGG----------QDAVRLAIEFCS--DKNYIRRDIGAFILGQIK   82 (280)
T ss_dssp             HHHHTSCHHHHHHHTTC---SSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHT--CSSHHHHHHHHHHHHHSC
T ss_pred             HHHHHhhHHHHHHHHHc---CCHHHHHHHHHHHHccCC----------chHHHHHHHHHc--CCCHHHHHHHHHHHHHhc
Confidence            34567889999999987   478888889998887642          235788999997  457899999999999874


Q ss_pred             cCChhhHHHHHHcCcHHHHHH-HHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCC
Q 010533          248 TGNEVVKESYMELKIDELILE-ILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLS  326 (508)
Q Consensus       248 ~~~e~nr~~i~~~G~i~~Lv~-lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d  326 (508)
                      ...+...      ..++.|.. +++..+..+...++++|..+...+..         +     ....++.|+.+|.+ .+
T Consensus        83 ~~~~~~~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~---------~-----~~~~~~~L~~~l~d-~~  141 (280)
T 1oyz_A           83 ICKKCED------NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI---------Y-----SPKIVEQSQITAFD-KS  141 (280)
T ss_dssp             CCTTTHH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG---------G-----HHHHHHHHHHHTTC-SC
T ss_pred             cccccch------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc---------c-----cHHHHHHHHHHhhC-CC
Confidence            3222111      12334443 33444557888899999988632210         0     11357888888875 46


Q ss_pred             hhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHH
Q 010533          327 SPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIV  406 (508)
Q Consensus       327 ~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~  406 (508)
                      +.+...++.+|+++..          .+.++.|+.++.+.    +..|...++.+|..+...+        ...++.|+.
T Consensus       142 ~~vR~~a~~aL~~~~~----------~~~~~~L~~~l~d~----~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~  199 (280)
T 1oyz_A          142 TNVRRATAFAISVIND----------KATIPLLINLLKDP----NGDVRNWAAFAININKYDN--------SDIRDCFVE  199 (280)
T ss_dssp             HHHHHHHHHHHHTC-------------CCHHHHHHHHTCS----SHHHHHHHHHHHHHHTCCC--------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCC----CHHHHHHHHHHHHhhccCc--------HHHHHHHHH
Confidence            8888999999987754          24789999999753    3489999999999984322        135688999


Q ss_pred             HHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHH
Q 010533          407 VSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSV  484 (508)
Q Consensus       407 lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~  484 (508)
                      +|.  .+++.++..++.+|..+.  +         ...++.|+.+++.    +.|+..|.++|..+.  .++....+.
T Consensus       200 ~l~--d~~~~vR~~A~~aL~~~~--~---------~~~~~~L~~~l~d----~~vr~~a~~aL~~i~--~~~~~~~L~  258 (280)
T 1oyz_A          200 MLQ--DKNEEVRIEAIIGLSYRK--D---------KRVLSVLCDELKK----NTVYDDIIEAAGELG--DKTLLPVLD  258 (280)
T ss_dssp             HTT--CSCHHHHHHHHHHHHHTT--C---------GGGHHHHHHHHTS----SSCCHHHHHHHHHHC--CGGGHHHHH
T ss_pred             Hhc--CCCHHHHHHHHHHHHHhC--C---------HhhHHHHHHHhcC----ccHHHHHHHHHHhcC--chhhhHHHH
Confidence            997  668999999999999986  2         3478888888854    237888999999874  455555554

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.96  E-value=4.3e-09  Score=116.78  Aligned_cols=172  Identities=10%  Similarity=0.039  Sum_probs=141.8

Q ss_pred             CCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHH-HHhccCCCCcHHHHHHHHHHHHHhh--CC
Q 010533          312 GIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLR-CIDDSGLQGNKTVARICCSLLSKLA--GS  388 (508)
Q Consensus       312 g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~-lL~~~~~~~~~~v~~~al~aL~~La--~~  388 (508)
                      +.|.|+++.|++ +++..+..+|++|++|+.+++..+.+...|+|..++. +|.+.    +.+|+.+|+++|+||+  +.
T Consensus        34 ~~i~Pll~~L~S-~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~----~~~Vr~~A~gaLrnL~~~~g  108 (684)
T 4gmo_A           34 DKILPVLKDLKS-PDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDN----NIDSRAAGWEILKVLAQEEE  108 (684)
T ss_dssp             HTTHHHHHHHSS-SCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCS----CHHHHHHHHHHHHHHHHHSC
T ss_pred             hhHHHHHHHcCC-CCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCC----CHHHHHHHHHHHHHHHhhcC
Confidence            356677788886 4778899999999999998888888999999987665 56543    3589999999999998  45


Q ss_pred             chhHHHHHhCCcHHHHHHHHhccCC------------C-------HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHH
Q 010533          389 DSNKSAIIENGGMDKLIVVSARFSD------------D-------ASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAI  449 (508)
Q Consensus       389 ~~~k~~Iv~~Ggl~~Lv~lL~~~~~------------~-------~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv  449 (508)
                      ++....+++.|++++|..++++...            .       ..+.++++.+|.+||..+.+....+...|+++.|+
T Consensus       109 ~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~  188 (684)
T 4gmo_A          109 ADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLL  188 (684)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHH
T ss_pred             chHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHH
Confidence            6888999999999999999863211            0       13667899999999988888888999999999999


Q ss_pred             HHHHc-CCCcHHHHHHHHHHHHHhhhcCccchHHHHhccc
Q 010533          450 QAMLK-FPNAQQLQRSSCFMIRNLVARNPENSFCSVMVSR  488 (508)
Q Consensus       450 ~~L~~-h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~g~  488 (508)
                      ..|.. ......++..|+.+|.+++..|++....+.+.|.
T Consensus       189 ~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~  228 (684)
T 4gmo_A          189 FRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQE  228 (684)
T ss_dssp             HHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCS
T ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcch
Confidence            98843 3344679999999999999999999999988764

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=98.91  E-value=7.7e-08  Score=89.93  Aligned_cols=188  Identities=11%  Similarity=0.093  Sum_probs=145.8

Q ss_pred             cCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcch
Q 010533          216 GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQ  295 (508)
Q Consensus       216 ~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r  295 (508)
                      .+.++.|++.|.  ..+..++..+++.|+.+..           .++++.|+.+|.+.+..+...++++|..+..     
T Consensus        18 ~~~~~~L~~~L~--~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQ--DDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-----   79 (211)
T ss_dssp             GGGHHHHHHHTT--CSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----
T ss_pred             HhHHHHHHHHHc--CCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----
Confidence            457889999997  4689999999999987632           2578999999998766888889999887641     


Q ss_pred             hhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHH
Q 010533          296 VVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVA  375 (508)
Q Consensus       296 ~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~  375 (508)
                                     .++++.|+.+|.+ +++.+...++.+|+.+...          +.++.|+.+|.+.    +..|.
T Consensus        80 ---------------~~~~~~L~~~l~~-~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~----~~~vr  129 (211)
T 3ltm_A           80 ---------------ERAVEPLIKALKD-EDGWVRQSAAVALGQIGDE----------RAVEPLIKALKDE----DWFVR  129 (211)
T ss_dssp             ---------------GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCS----SHHHH
T ss_pred             ---------------HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHhCC----CHHHH
Confidence                           2468999999876 4678889999999887642          4678899988652    45899


Q ss_pred             HHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcC
Q 010533          376 RICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKF  455 (508)
Q Consensus       376 ~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h  455 (508)
                      ..++.+|+.+..          ...++.|+.+|.  ..++.|+..++.+|..+.  ++         ..++.|.++++. 
T Consensus       130 ~~a~~aL~~~~~----------~~~~~~L~~~l~--d~~~~vr~~a~~aL~~~~--~~---------~~~~~L~~~l~d-  185 (211)
T 3ltm_A          130 IAAAFALGEIGD----------ERAVEPLIKALK--DEDGWVRQSAADALGEIG--GE---------RVRAAMEKLAET-  185 (211)
T ss_dssp             HHHHHHHHHHCC----------GGGHHHHHHHTT--CSSHHHHHHHHHHHHHHC--SH---------HHHHHHHHHHHH-
T ss_pred             HHHHHHHHHcCC----------HHHHHHHHHHHc--CCCHHHHHHHHHHHHHhC--ch---------hHHHHHHHHHhC-
Confidence            999999999843          247899999997  668999999999999985  22         356778888875 


Q ss_pred             CCcHHHHHHHHHHHHHhhhcC
Q 010533          456 PNAQQLQRSSCFMIRNLVARN  476 (508)
Q Consensus       456 ~~~~~vq~~A~~aL~nL~~~~  476 (508)
                       .++.|++.|..+|.++...+
T Consensus       186 -~~~~vr~~A~~aL~~~~~~~  205 (211)
T 3ltm_A          186 -GTGFARKVAVNYLETHKSFN  205 (211)
T ss_dssp             -CCHHHHHHHHHHHHC-----
T ss_pred             -CCHHHHHHHHHHHHhcCCCC
Confidence             46889999999999987543

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=98.90  E-value=6.2e-08  Score=90.56  Aligned_cols=187  Identities=13%  Similarity=0.103  Sum_probs=146.3

Q ss_pred             CCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCh
Q 010533          172 NGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE  251 (508)
Q Consensus       172 ~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e  251 (508)
                      .+.+|.|+.+|++   ++..++..|+..|..+..          .++++.|+++|.+  ++..++..++++|+.+..   
T Consensus        18 ~~~~~~L~~~L~~---~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~--~~~~vr~~a~~aL~~~~~---   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQD---DSYYVRRAAAYALGKIGD----------ERAVEPLIKALKD--EDAWVRRAAADALGQIGD---   79 (211)
T ss_dssp             GGGHHHHHHHTTC---SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTC--SCHHHHHHHHHHHHHHCC---
T ss_pred             HhHHHHHHHHHcC---CCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcC--CCHHHHHHHHHHHHhhCC---
Confidence            4579999999986   478899889888887543          3578999999974  589999999999988631   


Q ss_pred             hhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHH
Q 010533          252 VVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLI  331 (508)
Q Consensus       252 ~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~  331 (508)
                              .++++.|+.+|.+.+..+...|+++|..+..                    .+.++.|+.+|.+ +++.+..
T Consensus        80 --------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------------------~~~~~~L~~~l~d-~~~~vr~  130 (211)
T 3ltm_A           80 --------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--------------------ERAVEPLIKALKD-EDWFVRI  130 (211)
T ss_dssp             --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------------------GGGHHHHHHHTTC-SSHHHHH
T ss_pred             --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------------------HHHHHHHHHHHhC-CCHHHHH
Confidence                    2568899999988777888889999987742                    2468899998865 4678999


Q ss_pred             HHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhcc
Q 010533          332 SASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARF  411 (508)
Q Consensus       332 ~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~  411 (508)
                      .++.+|+++...          ..++.|+.++.+.    +..|...++.+|..+..          ..+++.|..++.  
T Consensus       131 ~a~~aL~~~~~~----------~~~~~L~~~l~d~----~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~--  184 (211)
T 3ltm_A          131 AAAFALGEIGDE----------RAVEPLIKALKDE----DGWVRQSAADALGEIGG----------ERVRAAMEKLAE--  184 (211)
T ss_dssp             HHHHHHHHHCCG----------GGHHHHHHHTTCS----SHHHHHHHHHHHHHHCS----------HHHHHHHHHHHH--
T ss_pred             HHHHHHHHcCCH----------HHHHHHHHHHcCC----CHHHHHHHHHHHHHhCc----------hhHHHHHHHHHh--
Confidence            999999888532          3678899988652    35899999999999843          246788999998  


Q ss_pred             CCCHHHHHHHHHHHHHHhcC
Q 010533          412 SDDASVLQEVMSIITVLSLR  431 (508)
Q Consensus       412 ~~~~~v~e~a~~aL~~La~~  431 (508)
                      .+++.|+..|..+|..+...
T Consensus       185 d~~~~vr~~A~~aL~~~~~~  204 (211)
T 3ltm_A          185 TGTGFARKVAVNYLETHKSF  204 (211)
T ss_dssp             HCCHHHHHHHHHHHHC----
T ss_pred             CCCHHHHHHHHHHHHhcCCC
Confidence            56899999999999998753

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=98.85  E-value=1.2e-07  Score=87.76  Aligned_cols=185  Identities=11%  Similarity=0.094  Sum_probs=145.6

Q ss_pred             cCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcch
Q 010533          216 GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQ  295 (508)
Q Consensus       216 ~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r  295 (508)
                      .+..+.+++.|.  +++..++..++++|..+..           .+.++.|+..|.+.+..+...|+++|..+..     
T Consensus        13 ~~~~~~~i~~L~--~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-----   74 (201)
T 3ltj_A           13 PEKVEMYIKNLQ--DDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-----   74 (201)
T ss_dssp             HHHHHHHHHHTT--CSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred             CcchHHHHHHhc--CCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----
Confidence            456788888997  4689999999999987631           2568999999987666788888888887641     


Q ss_pred             hhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHH
Q 010533          296 VVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVA  375 (508)
Q Consensus       296 ~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~  375 (508)
                                     ..+++.|+.+|.+ .++.+...++++|+.+...          ..++.|+.+|.+.    +..|+
T Consensus        75 ---------------~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~----~~~vr  124 (201)
T 3ltj_A           75 ---------------ERAVEPLIKALKD-EDGWVRQSAAVALGQIGDE----------RAVEPLIKALKDE----DWFVR  124 (201)
T ss_dssp             ---------------GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCS----SHHHH
T ss_pred             ---------------HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHcCC----CHHHH
Confidence                           2468999999876 4788999999999887542          3678888888652    45899


Q ss_pred             HHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcC
Q 010533          376 RICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKF  455 (508)
Q Consensus       376 ~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h  455 (508)
                      ..++.+|+.+..          .+.++.|+.++.  ..++.|+..++.+|..+.  +++         .++.|.+++.. 
T Consensus       125 ~~a~~aL~~~~~----------~~~~~~L~~~l~--d~~~~vr~~A~~aL~~~~--~~~---------~~~~L~~~l~d-  180 (201)
T 3ltj_A          125 IAAAFALGEIGD----------ERAVEPLIKALK--DEDGWVRQSAADALGEIG--GER---------VRAAMEKLAET-  180 (201)
T ss_dssp             HHHHHHHHHHTC----------GGGHHHHHHHTT--CSSHHHHHHHHHHHHHHC--SHH---------HHHHHHHHHHH-
T ss_pred             HHHHHHHHHhCC----------HHHHHHHHHHHc--CCCHHHHHHHHHHHHHhC--chh---------HHHHHHHHHhC-
Confidence            999999999853          357899999998  668999999999999984  332         56778888865 


Q ss_pred             CCcHHHHHHHHHHHHHhh
Q 010533          456 PNAQQLQRSSCFMIRNLV  473 (508)
Q Consensus       456 ~~~~~vq~~A~~aL~nL~  473 (508)
                       .++.|+..|..+|..+-
T Consensus       181 -~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          181 -GTGFARKVAVNYLETHK  197 (201)
T ss_dssp             -CCHHHHHHHHHHHHHCC
T ss_pred             -CCHHHHHHHHHHHHHHH
Confidence             46889999999998864

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=98.83  E-value=1.1e-07  Score=88.03  Aligned_cols=184  Identities=13%  Similarity=0.115  Sum_probs=145.5

Q ss_pred             CcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChh
Q 010533          173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV  252 (508)
Q Consensus       173 Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~  252 (508)
                      +..+.++.+|++   ++..++..|+.+|..+-.          .+.++.|+++|.  .++..++..++++|+.+.  .  
T Consensus        14 ~~~~~~i~~L~~---~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~--~~~~~vr~~a~~~L~~~~--~--   74 (201)
T 3ltj_A           14 EKVEMYIKNLQD---DSYYVRRAAAYALGKIGD----------ERAVEPLIKALK--DEDAWVRRAAADALGQIG--D--   74 (201)
T ss_dssp             HHHHHHHHHTTC---SCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT--CSSHHHHHHHHHHHHHHC--C--
T ss_pred             cchHHHHHHhcC---CCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHc--CCCHHHHHHHHHHHHhhC--C--
Confidence            568899999988   478899889998886543          246899999996  458899999999998863  1  


Q ss_pred             hHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHH
Q 010533          253 VKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLIS  332 (508)
Q Consensus       253 nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~  332 (508)
                             ..+++.|+.+|...+..+...|+++|..+..                    ..+++.|+.+|.+ +++.+...
T Consensus        75 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------------------~~~~~~L~~~l~d-~~~~vr~~  126 (201)
T 3ltj_A           75 -------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--------------------ERAVEPLIKALKD-EDWFVRIA  126 (201)
T ss_dssp             -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------------------GGGHHHHHHHTTC-SSHHHHHH
T ss_pred             -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------------------HHHHHHHHHHHcC-CCHHHHHH
Confidence                   2468899999988777888889999987642                    1468889998865 46788999


Q ss_pred             HHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccC
Q 010533          333 ASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFS  412 (508)
Q Consensus       333 a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~  412 (508)
                      ++++|+.+..          .+.++.|+.++.+.    +..+...++.+|+.+..          ..+++.|..++.  .
T Consensus       127 a~~aL~~~~~----------~~~~~~L~~~l~d~----~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~--d  180 (201)
T 3ltj_A          127 AAFALGEIGD----------ERAVEPLIKALKDE----DGWVRQSAADALGEIGG----------ERVRAAMEKLAE--T  180 (201)
T ss_dssp             HHHHHHHHTC----------GGGHHHHHHHTTCS----SHHHHHHHHHHHHHHCS----------HHHHHHHHHHHH--H
T ss_pred             HHHHHHHhCC----------HHHHHHHHHHHcCC----CHHHHHHHHHHHHHhCc----------hhHHHHHHHHHh--C
Confidence            9999988853          24678889888752    45899999999999832          236788999997  5


Q ss_pred             CCHHHHHHHHHHHHHHh
Q 010533          413 DDASVLQEVMSIITVLS  429 (508)
Q Consensus       413 ~~~~v~e~a~~aL~~La  429 (508)
                      .++.|+..|..+|..|.
T Consensus       181 ~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          181 GTGFARKVAVNYLETHK  197 (201)
T ss_dssp             CCHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            68999999999998874

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.77  E-value=4.4e-07  Score=98.82  Aligned_cols=303  Identities=12%  Similarity=0.067  Sum_probs=191.2

Q ss_pred             HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHH
Q 010533          122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA  201 (508)
Q Consensus       122 ~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa  201 (508)
                      ..+..+...+.+.       +..-.+.|+..+.++++.  +++   .+.+.+.+|.|..+|..   .+..++..|+.+|.
T Consensus       121 ~l~~~l~~~L~d~-------~~~VRk~A~~al~~i~~~--~p~---~~~~~~~~~~l~~lL~d---~d~~V~~~A~~aL~  185 (591)
T 2vgl_B          121 YLCEPLRKCLKDE-------DPYVRKTAAVCVAKLHDI--NAQ---MVEDQGFLDSLRDLIAD---SNPMVVANAVAALS  185 (591)
T ss_dssp             HHHHHHHHHSSCS-------CHHHHHHHHHHHHHHHHS--SCC---CHHHHHHHHHHHHTTSC---SCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCC-------ChHHHHHHHHHHHHHHhh--Chh---hcccccHHHHHHHHhCC---CChhHHHHHHHHHH
Confidence            3455566666654       677778899999999876  554   33345788999999976   47899999999999


Q ss_pred             HhhcCCcchh-HHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHH
Q 010533          202 LLVHDVQSTE-TFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQS  280 (508)
Q Consensus       202 ~l~~~~~~~~-~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~  280 (508)
                      .+..+..... .-...+.+..|+..|..  .++..+...+++++.++...+....     ..++.+...|++.+..++.+
T Consensus       186 ~i~~~~~~~~~~~l~~~~~~~Ll~~l~~--~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~e  258 (591)
T 2vgl_B          186 EISESHPNSNLLDLNPQNINKLLTALNE--CTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRLSHANSAVVLS  258 (591)
T ss_dssp             HHTTSCCSCCSCCCHHHHHHHHHHHHHH--CCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCSCSSTTHHHHH
T ss_pred             HHHhhCCCccchhccHHHHHHHHHcCCC--CCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHcCCChHHHHH
Confidence            9876542110 00112335667777753  4688888899999888655443322     34667777777766688999


Q ss_pred             HHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcC-hhhHhHHhhcCCHHHH
Q 010533          281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DEICKSVAENGGIDAL  359 (508)
Q Consensus       281 A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~-~e~~~~i~e~Ggi~~L  359 (508)
                      |++++..+...-..      ..+..+.+. ....++|+.++.  ++++++..++.+|..+... ++....     -+..+
T Consensus       259 a~~~i~~l~~~~~~------~~~~~~~~~-~~~~~~L~~L~~--~d~~vr~~aL~~l~~i~~~~p~~~~~-----~~~~~  324 (591)
T 2vgl_B          259 AVKVLMKFLELLPK------DSDYYNMLL-KKLAPPLVTLLS--GEPEVQYVALRNINLIVQKRPEILKQ-----EIKVF  324 (591)
T ss_dssp             HHHHHHHSCCSCCB------TTBSHHHHH-HHTHHHHHHHTT--SCHHHHHHHHHHHHHHHHHCCSTTTT-----CTTTT
T ss_pred             HHHHHHHHhhccCC------CHHHHHHHH-HHHHHHHHHHhc--CCccHHHHHHHHHHHHHHhChHHHHH-----HHHhh
Confidence            99999998631100      011122232 245688887664  4788888888888888752 221111     11111


Q ss_pred             HHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 010533          360 LRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARA  439 (508)
Q Consensus       360 v~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i  439 (508)
                         +... ++ +..|...++.+|..++.. .|...|     ++.|...+.  ..+..++..++++|..++.+.+..... 
T Consensus       325 ---~~~~-~d-~~~Ir~~al~~L~~l~~~-~nv~~i-----v~~L~~~l~--~~d~~~r~~~v~aI~~la~~~~~~~~~-  390 (591)
T 2vgl_B          325 ---FVKY-ND-PIYVKLEKLDIMIRLASQ-ANIAQV-----LAELKEYAT--EVDVDFVRKAVRAIGRCAIKVEQSAER-  390 (591)
T ss_dssp             ---SCCT-TS-CHHHHHHHHHHHHHTCCS-STHHHH-----HHHHHHHTT--SSCHHHHHHHHHHHHHHHTTCHHHHHH-
T ss_pred             ---eecc-CC-hHHHHHHHHHHHHHHCCh-hhHHHH-----HHHHHHHHh--cCCHHHHHHHHHHHHHHHHhChhHHHH-
Confidence               1111 11 247888888888887643 333322     344556665  456788888888888888776654433 


Q ss_pred             HhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccch
Q 010533          440 MEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENS  480 (508)
Q Consensus       440 ~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~  480 (508)
                          .++.|++++...  ...+..++..+|+++..++|+.+
T Consensus       391 ----~v~~Ll~ll~~~--~~~v~~e~i~~l~~ii~~~p~~~  425 (591)
T 2vgl_B          391 ----CVSTLLDLIQTK--VNYVVQEAIVVIRDIFRKYPNKY  425 (591)
T ss_dssp             ----HHHHHHHHHHTC--CHHHHHHHHHHHHHHHHHSCSSC
T ss_pred             ----HHHHHHHHHccc--chHHHHHHHHHHHHHHHHCcchH
Confidence                456777777532  34555666677777776666643

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.71  E-value=5.3e-07  Score=102.16  Aligned_cols=319  Identities=15%  Similarity=0.090  Sum_probs=187.4

Q ss_pred             hHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcc-hhHHHhcCChH
Q 010533          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPK  220 (508)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~-~~~i~~~ggi~  220 (508)
                      +......++..|..++..  ... ...-.-.+.+|.|+.+|++   .+..++..|++++..++..... .....-.+.++
T Consensus       372 ~~~~R~aa~~alg~i~~~--~~~-~~~~~l~~~l~~l~~~l~d---~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~  445 (852)
T 4fdd_A          372 EWVVKESGILVLGAIAEG--CMQ-GMIPYLPELIPHLIQCLSD---KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMT  445 (852)
T ss_dssp             SHHHHHHHHHHHHHTTTT--THH-HHGGGHHHHHHHHHHHTTC---SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhc--chH-HHHHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            455566677777777764  221 1111124567888888865   4678888888888877643210 00111224567


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhc-----------
Q 010533          221 LLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLL-----------  289 (508)
Q Consensus       221 ~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~-----------  289 (508)
                      .+++.|..  ++..++..++++|.+++......-..+. .+.++.|+..++.........+..++..++           
T Consensus       446 ~L~~~L~d--~~~~vr~~a~~aL~~l~~~~~~~l~~~l-~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~  522 (852)
T 4fdd_A          446 ELLKRILD--SNKRVQEAACSAFATLEEEACTELVPYL-AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPE  522 (852)
T ss_dssp             HHHHHHTC--SSHHHHHHHHHHHHHHHHHHGGGGGGGH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHH
T ss_pred             HHHHHHhC--CCHHHHHHHHHHHHHHHHHhhHhhHhHH-HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHH
Confidence            77777753  4789999999999998743221111111 256777777777654432222223333222           


Q ss_pred             ----------------CCCcchhhhhhcchHHHHHHh---cC-------CHHHHHHHHhcC----------------CCh
Q 010533          290 ----------------TPDDDQVVASQVYGYARRFAK---IG-------IARALVHSLHAG----------------LSS  327 (508)
Q Consensus       290 ----------------~~dd~r~~~~~a~~~~~~i~~---~g-------~i~~Lv~lL~~~----------------~d~  327 (508)
                                      .+++....  ...+....++.   .+       .++.++++++..                .+.
T Consensus       523 ~~~~l~p~l~~~~~~l~d~~~~~~--~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~  600 (852)
T 4fdd_A          523 YIQMLMPPLIQKWNMLKDEDKDLF--PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDK  600 (852)
T ss_dssp             HHHHHHHHHHHHHHHSCTTCTTHH--HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCT
T ss_pred             HHHHHHHHHHHHHHhcccccHHHH--HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcc
Confidence                            12221110  00111111111   11       123344444321                145


Q ss_pred             hHHHHHHHHHHHhhc--ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-Cc-hhHHHHHhCCcHHH
Q 010533          328 PSLISASIALKAVAV--NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SD-SNKSAIIENGGMDK  403 (508)
Q Consensus       328 ~~~~~a~~aL~~La~--~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~-~~-~~k~~Iv~~Ggl~~  403 (508)
                      +.+..++.+|+.++.  ..+....+.+.+.++.++.++.+.    +.+++..++.+|+.++. .+ ..+..+-  ..+|.
T Consensus       601 ~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~----~~~vr~~a~~~l~~l~~~~~~~~~~~l~--~~lp~  674 (852)
T 4fdd_A          601 DFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK----MPEVRQSSFALLGDLTKACFQHVKPCIA--DFMPI  674 (852)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCS----SHHHHHHHHHHHHHHHHHCGGGTGGGHH--HHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCC----ChhHHHHHHHHHHHHHHHhhHHHHHHHH--HHHHH
Confidence            577777888888875  344444454667888888888652    34899999999999973 22 2222222  25677


Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccch
Q 010533          404 LIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENS  480 (508)
Q Consensus       404 Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~  480 (508)
                      ++..|.  .+++.++.+|++++..++..-.+.....+ ...++.|+.+++.......++++++.+|..|+.++|+..
T Consensus       675 l~~~l~--~~~~~v~~~a~~alg~i~~~~~~~~~p~~-~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~  748 (852)
T 4fdd_A          675 LGTNLN--PEFISVCNNATWAIGEISIQMGIEMQPYI-PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEV  748 (852)
T ss_dssp             HHHTCC--TTSHHHHHHHHHHHHHHHHHHGGGGGGGT-HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHcC--ccchHHHHHHHHHHHHHHHHhhHhHHHHH-HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHh
Confidence            777775  56789999999999999854333322222 356788888886433346789999999999998877644

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.61  E-value=2.5e-07  Score=96.08  Aligned_cols=283  Identities=6%  Similarity=-0.013  Sum_probs=170.4

Q ss_pred             CCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHh---cCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q 010533          172 NGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRT---GGGPKLLVNILIDGNEDPEILNSGFAVVAASAT  248 (508)
Q Consensus       172 ~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~---~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~  248 (508)
                      .+.+|.|+..+.+.. .+..+...++.+|..++.+..  ..+..   ...++.++.+|.....+..++..+++++.++..
T Consensus       127 ~~ll~~L~~~l~~~~-~~~~~r~~al~~l~~l~~~~~--~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~  203 (462)
T 1ibr_B          127 PELIPQLVANVTNPN-STEHMKESTLEAIGYICQDID--PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE  203 (462)
T ss_dssp             TTHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHHSC--GGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhccCC-CCHHHHHHHHHHHHHHHHhCC--chhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence            357888888887631 166777788888888875321  11111   235677777776432268999999999998653


Q ss_pred             CChhhHH-HHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCCh
Q 010533          249 GNEVVKE-SYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSS  327 (508)
Q Consensus       249 ~~e~nr~-~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~  327 (508)
                      .-+.+-. .....-.++.|...+...+.++...++++|..+.......  +.   ++..    .+.++.++..+++ .++
T Consensus       204 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~--~~---~~~~----~~l~~~~~~~~~~-~~~  273 (462)
T 1ibr_B          204 FTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY--ME---TYMG----PALFAITIEAMKS-DID  273 (462)
T ss_dssp             TTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGG--CT---TTTT----TTHHHHHHHHHHC-SSH
T ss_pred             HHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH--HH---HHHH----HHHHHHHHHHHcC-Cch
Confidence            2221110 0001113455555555555578888999998887322110  00   1111    1446666677765 356


Q ss_pred             hHHHHHHHHHHHhhcChhh------------------HhHHhh---cCCHHHHHHHHhccC---CCCcHHHHHHHHHHHH
Q 010533          328 PSLISASIALKAVAVNDEI------------------CKSVAE---NGGIDALLRCIDDSG---LQGNKTVARICCSLLS  383 (508)
Q Consensus       328 ~~~~~a~~aL~~La~~~e~------------------~~~i~e---~Ggi~~Lv~lL~~~~---~~~~~~v~~~al~aL~  383 (508)
                      .+...++..+..++.....                  +..+.+   ...++.+++.|.+..   ++.+..+...|+.+|.
T Consensus       274 ~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~  353 (462)
T 1ibr_B          274 EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLM  353 (462)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHH
Confidence            7778888877777653210                  011111   123566666675421   1112368889999999


Q ss_pred             HhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHhcCcHHHHHHHHHcCCCcHHHH
Q 010533          384 KLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSP-ENAARAMEAGSGDLAIQAMLKFPNAQQLQ  462 (508)
Q Consensus       384 ~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~-~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq  462 (508)
                      .|+..-. . .+.. ..++.+...|.  ..+..+++.|+.+|..++.+.. +.....+ ...++.++.+|..  .++.|+
T Consensus       354 ~l~~~~~-~-~~~~-~~~~~l~~~l~--~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d--~~~~Vr  425 (462)
T 1ibr_B          354 LLATCCE-D-DIVP-HVLPFIKEHIK--NPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKD--PSVVVR  425 (462)
T ss_dssp             HHHHHTT-T-THHH-HHHHHHHHHTT--CSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGC--SCHHHH
T ss_pred             HHHHhcc-H-HHHH-HHHHHHHHHhc--CCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcC--CCHHHH
Confidence            9874221 1 1221 34567777776  5679999999999999996433 2111111 4578889998853  468999


Q ss_pred             HHHHHHHHHhhhc
Q 010533          463 RSSCFMIRNLVAR  475 (508)
Q Consensus       463 ~~A~~aL~nL~~~  475 (508)
                      ..|||+|.+++..
T Consensus       426 ~~a~~~l~~~~~~  438 (462)
T 1ibr_B          426 DTAAWTVGRICEL  438 (462)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999864

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.55  E-value=5.9e-06  Score=90.43  Aligned_cols=263  Identities=12%  Similarity=0.092  Sum_probs=168.5

Q ss_pred             CcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcch-hHHHhcCChHHHHHHHhcC-------------CCCHHHHHH
Q 010533          173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST-ETFRTGGGPKLLVNILIDG-------------NEDPEILNS  238 (508)
Q Consensus       173 Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~-~~i~~~ggi~~Lv~lL~~~-------------~~~~~v~~~  238 (508)
                      +.++.|..+|..   .+..++..|+.+|..+...++.. ..+  ...++.++++|...             ..++..+..
T Consensus       179 ~~~~~l~~lL~D---~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~  253 (618)
T 1w63_A          179 MFLPATKNLLNE---KNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVR  253 (618)
T ss_dssp             GGGGGTTTSTTC---CCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHH
T ss_pred             HHHHHHHHHhCC---CCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHH
Confidence            455555666654   46788888888888887543111 112  25688888888641             347899999


Q ss_pred             HHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcC------ChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcC
Q 010533          239 GFAVVAASATGNEVVKESYMELKIDELILEILSRQ------RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIG  312 (508)
Q Consensus       239 a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~------~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g  312 (508)
                      .+++|+.++..++...+     ..++.|..+++..      +..++.++++++..+..+.              .+.+ .
T Consensus       254 il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~--------------~l~~-~  313 (618)
T 1w63_A          254 ILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSES--------------GLRV-L  313 (618)
T ss_dssp             HHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCH--------------HHHH-H
T ss_pred             HHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCH--------------HHHH-H
Confidence            99999999866554332     3455666666421      1267778888888875311              1111 3


Q ss_pred             CHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhH
Q 010533          313 IARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNK  392 (508)
Q Consensus       313 ~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k  392 (508)
                      ++..|..+|.+ .+++++.-+..+|..++....   .++. .....++.++.+.    +..|...++.+|..|+.... .
T Consensus       314 a~~~L~~~L~~-~d~~vr~~aL~~L~~i~~~~p---~~~~-~~~~~i~~~l~d~----d~~Ir~~alelL~~l~~~~n-v  383 (618)
T 1w63_A          314 AINILGRFLLN-NDKNIRYVALTSLLKTVQTDH---NAVQ-RHRSTIVDCLKDL----DVSIKRRAMELSFALVNGNN-I  383 (618)
T ss_dssp             HHHHHHHHHTC-SSTTTHHHHHHHHHHHHHHHH---HHHG-GGHHHHHHGGGSS----CHHHHHHHHHHHHHHCCSSS-T
T ss_pred             HHHHHHHHHhC-CCCchHHHHHHHHHHHHhhCH---HHHH-HHHHHHHHHccCC----ChhHHHHHHHHHHHHccccc-H
Confidence            57888888876 367788888888888886422   1221 1345677777652    35899999999999986433 3


Q ss_pred             HHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 010533          393 SAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNL  472 (508)
Q Consensus       393 ~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL  472 (508)
                      ..|     ++.|+..+.  ..+..++..++.+|..+|.+.+......     ++.++++++...  ..++..+...++.+
T Consensus       384 ~~i-----v~eL~~~l~--~~d~e~r~~~v~~I~~la~k~~~~~~~~-----v~~ll~lL~~~~--~~v~~~~~~~l~~i  449 (618)
T 1w63_A          384 RGM-----MKELLYFLD--SCEPEFKADCASGIFLAAEKYAPSKRWH-----IDTIMRVLTTAG--SYVRDDAVPNLIQL  449 (618)
T ss_dssp             HHH-----HHHHHHHHH--HCCHHHHHHHHHHHHHHHHSSCCCHHHH-----HHHHHHHHHHTG--GGSCSSHHHHHHHH
T ss_pred             HHH-----HHHHHHHHH--hCCHHHHHHHHHHHHHHHHHhCccHHHH-----HHHHHHHHHhcc--chhHHHHHHHHHHH
Confidence            333     367777777  5678999999999999998764443332     455666665431  22333445556666


Q ss_pred             hhcCccchHHHH
Q 010533          473 VARNPENSFCSV  484 (508)
Q Consensus       473 ~~~~~e~~~~~~  484 (508)
                      ..++|+.+...+
T Consensus       450 i~~~p~l~~~~v  461 (618)
T 1w63_A          450 ITNSVEMHAYTV  461 (618)
T ss_dssp             HHHSCSTHHHHH
T ss_pred             HhcChhHHHHHH
Confidence            655666554433

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.52  E-value=1.9e-05  Score=85.80  Aligned_cols=294  Identities=12%  Similarity=0.088  Sum_probs=177.0

Q ss_pred             hHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHH
Q 010533          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKL  221 (508)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~  221 (508)
                      +.+..+-+.-.+..+++.  +++..     .-+++.|..-|++   +++.++..|+.+|+.+...     .+. ...++.
T Consensus        62 ~~~~Krl~yl~l~~~~~~--~~e~~-----~l~~n~l~kdL~~---~n~~ir~~AL~~L~~i~~~-----~~~-~~l~~~  125 (591)
T 2vgl_B           62 NLELKKLVYLYLMNYAKS--QPDMA-----IMAVNSFVKDCED---PNPLIRALAVRTMGCIRVD-----KIT-EYLCEP  125 (591)
T ss_dssp             CHHHHHHHHHHHHHHHHH--SHHHH-----HTTHHHHGGGSSS---SSHHHHHHHHHHHHTCCSG-----GGH-HHHHHH
T ss_pred             CHHHHHHHHHHHHHHccc--CchHH-----HHHHHHHHHHcCC---CCHHHHHHHHHHHHcCChH-----HHH-HHHHHH
Confidence            444444444455555543  34321     1134555555554   4778888899998887532     111 123566


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhc
Q 010533          222 LVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQV  301 (508)
Q Consensus       222 Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a  301 (508)
                      +.++|.  +.++.|+..|+.++..++..+++   .+.+.+.++.|..+|...+..++.+|.++|..++.++.....+   
T Consensus       126 l~~~L~--d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~---  197 (591)
T 2vgl_B          126 LRKCLK--DEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLL---  197 (591)
T ss_dssp             HHHHSS--CSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSC---
T ss_pred             HHHHcC--CCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccch---
Confidence            778886  46899999999999999776554   2233577899999998766689999999999998654211000   


Q ss_pred             chHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChh-hHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHH
Q 010533          302 YGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDE-ICKSVAENGGIDALLRCIDDSGLQGNKTVARICCS  380 (508)
Q Consensus       302 ~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e-~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~  380 (508)
                       .    + ..+.+..|+..+... ++-.+..+..+|..++..++ ....     .++.+..+|++.    +..|+-+|+.
T Consensus       198 -~----l-~~~~~~~Ll~~l~~~-~~~~q~~il~~l~~l~~~~~~~~~~-----~l~~l~~~l~~~----~~~V~~ea~~  261 (591)
T 2vgl_B          198 -D----L-NPQNINKLLTALNEC-TEWGQIFILDCLSNYNPKDDREAQS-----ICERVTPRLSHA----NSAVVLSAVK  261 (591)
T ss_dssp             -C----C-HHHHHHHHHHHHHHC-CHHHHHHHHHHHHTSCCCSHHHHHH-----HHHHHTTCSCSS----TTHHHHHHHH
T ss_pred             -h----c-cHHHHHHHHHcCCCC-CchHHHHHHHHHHHhCCCChHHHHH-----HHHHHHHHHcCC----ChHHHHHHHH
Confidence             0    0 113356677777654 56566677777777775322 2221     244555555532    3489999999


Q ss_pred             HHHHhhC----CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhh------------------HHH
Q 010533          381 LLSKLAG----SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPEN------------------AAR  438 (508)
Q Consensus       381 aL~~La~----~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~------------------~~~  438 (508)
                      +|..+..    +++....++. ...+.|+.++.   +++.++..|+.+|..++..+|+.                  +..
T Consensus       262 ~i~~l~~~~~~~~~~~~~~~~-~~~~~L~~L~~---~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~  337 (591)
T 2vgl_B          262 VLMKFLELLPKDSDYYNMLLK-KLAPPLVTLLS---GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLE  337 (591)
T ss_dssp             HHHHSCCSCCBTTBSHHHHHH-HTHHHHHHHTT---SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHH
T ss_pred             HHHHHhhccCCCHHHHHHHHH-HHHHHHHHHhc---CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHH
Confidence            9999863    3344443332 34567776653   46788888888888776433321                  111


Q ss_pred             HH-------hcCcHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhhcCccc
Q 010533          439 AM-------EAGSGDLAIQAMLKF--PNAQQLQRSSCFMIRNLVARNPEN  479 (508)
Q Consensus       439 i~-------~~G~i~~Lv~~L~~h--~~~~~vq~~A~~aL~nL~~~~~e~  479 (508)
                      .+       ....+..++.-|..+  ..+..+++.++++|.+++.+.+..
T Consensus       338 al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~  387 (591)
T 2vgl_B          338 KLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQS  387 (591)
T ss_dssp             HHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhH
Confidence            11       122233333333222  246788899999999998776543

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.49  E-value=9.9e-06  Score=91.17  Aligned_cols=314  Identities=10%  Similarity=0.030  Sum_probs=182.2

Q ss_pred             hHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcch--hHHHhcCCh
Q 010533          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST--ETFRTGGGP  219 (508)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~--~~i~~~ggi  219 (508)
                      +......++..|..+|.. -+++. ..-.-...+|.++..+.... .+.+++..+++++..++..-...  ........+
T Consensus       143 ~~~~r~~al~~l~~l~~~-~~~~~-~~~~~~~ll~~l~~~l~~~~-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il  219 (876)
T 1qgr_A          143 TEHMKESTLEAIGYICQD-IDPEQ-LQDKSNEILTAIIQGMRKEE-PSNNVKLAATNALLNSLEFTKANFDKESERHFIM  219 (876)
T ss_dssp             CHHHHHHHHHHHHHHHHH-SCHHH-HGGGHHHHHHHHHHHHSTTC-SCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHh-cCHhh-HHhHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            345556678888888753 01111 00001234555666665431 25678888888888776421100  000011134


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCc------
Q 010533          220 KLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDD------  293 (508)
Q Consensus       220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd------  293 (508)
                      +.+..++.  ..+.+++..++++|..++......-...+....++.++..+...++.+...++..+..++....      
T Consensus       220 ~~l~~~~~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~  297 (876)
T 1qgr_A          220 QVVCEATQ--CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEA  297 (876)
T ss_dssp             HHHHHHTT--CSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcC--CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhh
Confidence            44555543  4578899999999999876554332233344678888888876666778888888887763210      


Q ss_pred             -chh-----hhhhcchHHHHHHhcCCHHHHHHHHhcCC------ChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHH
Q 010533          294 -DQV-----VASQVYGYARRFAKIGIARALVHSLHAGL------SSPSLISASIALKAVAVNDEICKSVAENGGIDALLR  361 (508)
Q Consensus       294 -~r~-----~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~------d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~  361 (508)
                       ...     +......+.+... ...++.++..|....      +..+...+..+|..++..-.  ..++. ..++.+..
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~-~~l~~l~~  373 (876)
T 1qgr_A          298 SEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIVP-HVLPFIKE  373 (876)
T ss_dssp             HHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GGGHH-HHHHHHHH
T ss_pred             ccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--HhhHH-HHHHHHHH
Confidence             000     0000111222222 134778888886421      23566777778877765321  11111 12333444


Q ss_pred             HHhccCCCCcHHHHHHHHHHHHHhhCCc--hhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhH--H
Q 010533          362 CIDDSGLQGNKTVARICCSLLSKLAGSD--SNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENA--A  437 (508)
Q Consensus       362 lL~~~~~~~~~~v~~~al~aL~~La~~~--~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~--~  437 (508)
                      .+.+    .++.++..++.+|+.++...  +.-.... ...+|.|+..|.  ..++.|+..|+++|.+++...+...  .
T Consensus       374 ~l~~----~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~--d~~~~vr~~a~~~l~~~~~~~~~~~~~~  446 (876)
T 1qgr_A          374 HIKN----PDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMK--DPSVVVRDTAAWTVGRICELLPEAAIND  446 (876)
T ss_dssp             HTTC----SSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHCGGGTSST
T ss_pred             HccC----CChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhCchhcccH
Confidence            4432    35689999999999998542  2222222 246889999997  5679999999999999996533210  0


Q ss_pred             HHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhc
Q 010533          438 RAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR  475 (508)
Q Consensus       438 ~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~  475 (508)
                      ..+ ...++.++..|..   ++.|+..+||+|.+++..
T Consensus       447 ~~l-~~~l~~l~~~l~~---~~~v~~~a~~al~~l~~~  480 (876)
T 1qgr_A          447 VYL-APLLQCLIEGLSA---EPRVASNVCWAFSSLAEA  480 (876)
T ss_dssp             TTH-HHHHHHHHHHTTS---CHHHHHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHH
Confidence            111 1345667777743   378999999999999853

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.49  E-value=9.7e-06  Score=86.72  Aligned_cols=292  Identities=10%  Similarity=-0.007  Sum_probs=177.4

Q ss_pred             HHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHH
Q 010533          143 LNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLL  222 (508)
Q Consensus       143 ~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~L  222 (508)
                      .+....++..|..++..- ++..+....-...+|.+..++++   .+..++..++++|..+...-.  ........+|.+
T Consensus       295 ~~vr~~a~~~l~~~~~~~-~~~~~~~~~~~~l~p~l~~~l~d---~~~~vR~~a~~~l~~l~~~~~--~~~~~~~l~p~l  368 (588)
T 1b3u_A          295 AEVRAAASHKVKEFCENL-SADCRENVIMSQILPCIKELVSD---ANQHVKSALASVIMGLSPILG--KDNTIEHLLPLF  368 (588)
T ss_dssp             HHHHHHHHHHHHHHHHTS-CTTTHHHHHHHTHHHHHHHHHTC---SCHHHHHHHHTTGGGGHHHHC--HHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh-ChhhhhhHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhh--HhHHHHHHHHHH
Confidence            344444555555555430 11111111223467788887766   367787777777776653211  122223467788


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcc
Q 010533          223 VNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVY  302 (508)
Q Consensus       223 v~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~  302 (508)
                      ..+|.  .++.+++..++.++..++.....  .. .....+|.|..++...+..++..++.+|..++..      ++.. 
T Consensus       369 ~~~l~--d~~~~Vr~~a~~~l~~l~~~~~~--~~-~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~------~~~~-  436 (588)
T 1b3u_A          369 LAQLK--DECPEVRLNIISNLDCVNEVIGI--RQ-LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ------LGVE-  436 (588)
T ss_dssp             HHHHT--CSCHHHHHHHHTTCHHHHHHSCH--HH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH------HCGG-
T ss_pred             HHHhC--CCchHHHHHHHHHHHHHHHhcCH--HH-HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH------cCHH-
Confidence            88886  35789999998888777542221  11 1234678888888765557777888888877621      0000 


Q ss_pred             hHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHH
Q 010533          303 GYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLL  382 (508)
Q Consensus       303 ~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL  382 (508)
                           +.....++.++.+|.+. +..+...++.+|+.++..-...  ..-...++.|+.++.+    ++..++..++.+|
T Consensus       437 -----~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~----~~~~~R~~a~~~l  504 (588)
T 1b3u_A          437 -----FFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGD----PNYLHRMTTLFCI  504 (588)
T ss_dssp             -----GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTC----SCHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhhC----CCHHHHHHHHHHH
Confidence                 00112467788877653 5678889999998887532111  1112345666665543    2458899999999


Q ss_pred             HHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHH
Q 010533          383 SKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQ  462 (508)
Q Consensus       383 ~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq  462 (508)
                      ..++..-..  .......+|.|+.++.  ..++.|+..++.+|..++..-..   ........+.|.+++.  ..+..|+
T Consensus       505 ~~l~~~~~~--~~~~~~~~~~l~~~l~--d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~~~p~l~~l~~--d~d~~vr  575 (588)
T 1b3u_A          505 NVLSEVCGQ--DITTKHMLPTVLRMAG--DPVANVRFNVAKSLQKIGPILDN---STLQSEVKPILEKLTQ--DQDVDVK  575 (588)
T ss_dssp             HHHHHHHHH--HHHHHHTHHHHHHGGG--CSCHHHHHHHHHHHHHHGGGSCH---HHHHHHHHHHHHHHTT--CSSHHHH
T ss_pred             HHHHHhcCH--HHHHHHHHHHHHhhCC--CCCchHHHHHHHHHHHHHHHhch---hhhHHHHHHHHHHHcC--CCchhHH
Confidence            998742111  1122356788888887  56799999999999999853221   1222334566666542  3578999


Q ss_pred             HHHHHHHHHhh
Q 010533          463 RSSCFMIRNLV  473 (508)
Q Consensus       463 ~~A~~aL~nL~  473 (508)
                      ..|+.||..+.
T Consensus       576 ~~a~~al~~l~  586 (588)
T 1b3u_A          576 YFAQEALTVLS  586 (588)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHhh
Confidence            99999998763

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.45  E-value=3.4e-05  Score=84.38  Aligned_cols=291  Identities=11%  Similarity=0.044  Sum_probs=190.1

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHH
Q 010533          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (508)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~  202 (508)
                      ++..|..-+.+.       +.....-|++.|..+..    ++    +. ...+|.+..+|++   .++.+...|+.++..
T Consensus       108 ~in~l~kDL~~~-------n~~vr~lAL~~L~~i~~----~~----~~-~~l~~~l~~~L~~---~~~~VRk~A~~al~~  168 (618)
T 1w63_A          108 MTNCIKNDLNHS-------TQFVQGLALCTLGCMGS----SE----MC-RDLAGEVEKLLKT---SNSYLRKKAALCAVH  168 (618)
T ss_dssp             HHHHHHHHHSCS-------SSHHHHHHHHHHHHHCC----HH----HH-HHHHHHHHHHHHS---CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCC-------CHhHHHHHHHHHHhcCC----HH----HH-HHHHHHHHHHHcC---CCHHHHHHHHHHHHH
Confidence            445555554443       44444555555555532    21    11 2457888888877   478899999999988


Q ss_pred             hhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhc----------
Q 010533          203 LVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSR----------  272 (508)
Q Consensus       203 l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~----------  272 (508)
                      +....   ++.+. +.++.+.++|.  ..++.|+..|+.+|..++..+++....+.  ..++.++.+|..          
T Consensus       169 l~~~~---p~~v~-~~~~~l~~lL~--D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~  240 (618)
T 1w63_A          169 VIRKV---PELME-MFLPATKNLLN--EKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEH  240 (618)
T ss_dssp             HHHHC---GGGGG-GGGGGTTTSTT--CCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTT
T ss_pred             HHHHC---hHHHH-HHHHHHHHHhC--CCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccc
Confidence            87543   22222 45666666775  45789999999999999765443322332  678889888874          


Q ss_pred             -----CChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcC-----CChhHHHHHHHHHHHhhc
Q 010533          273 -----QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAG-----LSSPSLISASIALKAVAV  342 (508)
Q Consensus       273 -----~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~-----~d~~~~~~a~~aL~~La~  342 (508)
                           .++-.+.....+|..++..|..             . ....++.|..+++..     .+..++..++.++..+..
T Consensus       241 ~~~~~~~~~~q~~il~~L~~l~~~~~~-------------~-~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~  306 (618)
T 1w63_A          241 DVSGISDPFLQVRILRLLRILGRNDDD-------------S-SEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS  306 (618)
T ss_dssp             CSSSSSCHHHHHHHHHHHHHHTTTCHH-------------H-HHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC
T ss_pred             cccCCCCChHHHHHHHHHHHhCCCCHH-------------H-HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC
Confidence                 1334455567778888765411             1 113456666666431     124678888899888765


Q ss_pred             ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHH
Q 010533          343 NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVM  422 (508)
Q Consensus       343 ~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~  422 (508)
                      .++...     .++..|..++.+. +   ..++..++.+|..++...  .. ++. ...+.++.++.  .++..|+..+.
T Consensus       307 ~~~l~~-----~a~~~L~~~L~~~-d---~~vr~~aL~~L~~i~~~~--p~-~~~-~~~~~i~~~l~--d~d~~Ir~~al  371 (618)
T 1w63_A          307 ESGLRV-----LAINILGRFLLNN-D---KNIRYVALTSLLKTVQTD--HN-AVQ-RHRSTIVDCLK--DLDVSIKRRAM  371 (618)
T ss_dssp             CHHHHH-----HHHHHHHHHHTCS-S---TTTHHHHHHHHHHHHHHH--HH-HHG-GGHHHHHHGGG--SSCHHHHHHHH
T ss_pred             CHHHHH-----HHHHHHHHHHhCC-C---CchHHHHHHHHHHHHhhC--HH-HHH-HHHHHHHHHcc--CCChhHHHHHH
Confidence            443222     3567888888753 2   278889999999987531  11 222 35678888887  67899999999


Q ss_pred             HHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCcc
Q 010533          423 SIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPE  478 (508)
Q Consensus       423 ~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e  478 (508)
                      .+|..|+.  ++|...++     ..+.+.+..  .+..+++.+..+|..++.+.+.
T Consensus       372 elL~~l~~--~~nv~~iv-----~eL~~~l~~--~d~e~r~~~v~~I~~la~k~~~  418 (618)
T 1w63_A          372 ELSFALVN--GNNIRGMM-----KELLYFLDS--CEPEFKADCASGIFLAAEKYAP  418 (618)
T ss_dssp             HHHHHHCC--SSSTHHHH-----HHHHHHHHH--CCHHHHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHHcc--cccHHHHH-----HHHHHHHHh--CCHHHHHHHHHHHHHHHHHhCc
Confidence            99999984  45555553     566677754  4678999999999999986533

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.39  E-value=2.9e-05  Score=82.93  Aligned_cols=288  Identities=10%  Similarity=0.016  Sum_probs=175.9

Q ss_pred             hHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHH
Q 010533          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKL  221 (508)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~  221 (508)
                      +......|...|.+++..  .+..   ....-.+|.+..+..+   ++......+...+..+.....   .......++.
T Consensus       100 ~~~vR~~a~~~L~~l~~~--~~~~---~~~~~l~~~l~~l~~~---~~~~~R~~a~~~l~~~~~~~~---~~~~~~l~~~  168 (588)
T 1b3u_A          100 ETVVRDKAVESLRAISHE--HSPS---DLEAHFVPLVKRLAGG---DWFTSRTSACGLFSVCYPRVS---SAVKAELRQY  168 (588)
T ss_dssp             CHHHHHHHHHHHHHHHTT--SCHH---HHHHTHHHHHHHHHTC---SSHHHHHHHGGGHHHHTTTSC---HHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHH--CCHH---HHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHHHhcC---HHHHHHHHHH
Confidence            566667788889998875  3322   1223356777676654   356667677777776654321   1122234566


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhc
Q 010533          222 LVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQV  301 (508)
Q Consensus       222 Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a  301 (508)
                      +..++.  .++..++..++.+|+.++.....   .......++.+..+++..+..+...|+.+|..++..-..       
T Consensus       169 l~~l~~--d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-------  236 (588)
T 1b3u_A          169 FRNLCS--DDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ-------  236 (588)
T ss_dssp             HHHHHT--CSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH-------
T ss_pred             HHHHhC--CCCHHHHHHHHHHHHHHHHHhcH---HhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH-------
Confidence            666665  45899999999999998754332   122346788888888776667777788888877632110       


Q ss_pred             chHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcC--hhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHH
Q 010533          302 YGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN--DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICC  379 (508)
Q Consensus       302 ~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~--~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al  379 (508)
                          ..+ ....++.+..++.+ .+..+...++.+|..++..  ++.    .....++.++.++.+.    +.+++..++
T Consensus       237 ----~~~-~~~~~~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~----~~~vr~~a~  302 (588)
T 1b3u_A          237 ----EDL-EALVMPTLRQAAED-KSWRVRYMVADKFTELQKAVGPEI----TKTDLVPAFQNLMKDC----EAEVRAAAS  302 (588)
T ss_dssp             ----HHH-HHHTHHHHHHHHTC-SSHHHHHHHHHTHHHHHHHHCHHH----HHHTHHHHHHHHHTCS----SHHHHHHHH
T ss_pred             ----HHH-HHHHHHHHHHHccC-CCHHHHHHHHHHHHHHHHHhCccc----chhHHHHHHHHHhCCC----cHHHHHHHH
Confidence                011 12467778787764 3567888999999888752  221    1223478888888752    358999999


Q ss_pred             HHHHHhhCC--chhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCC
Q 010533          380 SLLSKLAGS--DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPN  457 (508)
Q Consensus       380 ~aL~~La~~--~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~  457 (508)
                      .+|..++..  ++.+....-...+|.+..++.  ..++.++..++.+|..++..-...   ......++.+..+++.  .
T Consensus       303 ~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~--d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d--~  375 (588)
T 1b3u_A          303 HKVKEFCENLSADCRENVIMSQILPCIKELVS--DANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKD--E  375 (588)
T ss_dssp             HHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHT--CSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTC--S
T ss_pred             HHHHHHHHHhChhhhhhHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCC--C
Confidence            999998742  222211222345678888887  567889998888888776311110   0111244555555532  2


Q ss_pred             cHHHHHHHHHHHHHhh
Q 010533          458 AQQLQRSSCFMIRNLV  473 (508)
Q Consensus       458 ~~~vq~~A~~aL~nL~  473 (508)
                      ++.|+..++.++..++
T Consensus       376 ~~~Vr~~a~~~l~~l~  391 (588)
T 1b3u_A          376 CPEVRLNIISNLDCVN  391 (588)
T ss_dssp             CHHHHHHHHTTCHHHH
T ss_pred             chHHHHHHHHHHHHHH
Confidence            3556655555555544

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.31  E-value=0.00026  Score=79.37  Aligned_cols=327  Identities=12%  Similarity=0.098  Sum_probs=185.5

Q ss_pred             HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhH-HHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHH
Q 010533          122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNA-AVATKNGGVELVCSICYKMRCGSKRVLDSCLKTM  200 (508)
Q Consensus       122 ~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r-~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aL  200 (508)
                      ..+..|...+.+.      .+......++..|..+|+.- ++..+ ..-.....+|.++..+.+.. .+.+++..++.++
T Consensus       134 ~ll~~L~~~l~~~------~~~~~r~~al~~l~~l~~~~-~~~~~~~~~~~~~ll~~l~~~l~~~~-~~~~vr~~al~~l  205 (861)
T 2bpt_A          134 ELMKIMVDNTGAE------QPENVKRASLLALGYMCESA-DPQSQALVSSSNNILIAIVQGAQSTE-TSKAVRLAALNAL  205 (861)
T ss_dssp             HHHHHHHHHTSTT------SCHHHHHHHHHHHHHHHHTS-STTSSTTGGGHHHHHHHHHHHHSTTC-CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHcC-ChhhhHHHHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHH
Confidence            3455566655432      14556677888888888641 11110 00001124566666665531 2678888899988


Q ss_pred             HHhhcCCcchhHHH----hcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChH
Q 010533          201 ALLVHDVQSTETFR----TGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRND  276 (508)
Q Consensus       201 a~l~~~~~~~~~i~----~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~  276 (508)
                      ..++..-.  ..+.    ....++.+..++.  ..+.+++..++.+|..++...+..-...+....++.++..+...++.
T Consensus       206 ~~~~~~~~--~~~~~~~~~~~ll~~l~~~~~--~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  281 (861)
T 2bpt_A          206 ADSLIFIK--NNMEREGERNYLMQVVCEATQ--AEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDK  281 (861)
T ss_dssp             HHHGGGCH--HHHTSHHHHHHHHHHHHHHHT--CSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHH
T ss_pred             HHHHHHHH--HHccChhHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence            87653211  0110    0112344444443  45789999999999988754332211222225666777777666667


Q ss_pred             HHHHHHHHHHHhcCCCcchhhhhh--------cchHHHHHHhcCCHHHHHHHHhcCC------ChhHHHHHHHHHHHhhc
Q 010533          277 SIQSLYDAIRVLLTPDDDQVVASQ--------VYGYARRFAKIGIARALVHSLHAGL------SSPSLISASIALKAVAV  342 (508)
Q Consensus       277 ~~~~A~~aL~~L~~~dd~r~~~~~--------a~~~~~~i~~~g~i~~Lv~lL~~~~------d~~~~~~a~~aL~~La~  342 (508)
                      +...++.++..++...........        .....+.+. ...++.++..|+...      +..+...++.+|..++.
T Consensus       282 vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~  360 (861)
T 2bpt_A          282 VASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQ  360 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHH
Confidence            888888888877632100000000        001112222 246788888887532      13567778888888875


Q ss_pred             ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCc--hhHHHHHhCCcHHHHHHHHhccCCCHHHHHH
Q 010533          343 NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSD--SNKSAIIENGGMDKLIVVSARFSDDASVLQE  420 (508)
Q Consensus       343 ~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~--~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~  420 (508)
                      .-.  .     ..++.++..+.....+.++.+++.++.+|+.++...  +.-...+. ..++.|+..+.  ..++.++..
T Consensus       361 ~~~--~-----~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~--d~~~~vr~~  430 (861)
T 2bpt_A          361 NCG--N-----HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMN--DQSLQVKET  430 (861)
T ss_dssp             HHG--G-----GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGG--CSCHHHHHH
T ss_pred             Hcc--H-----hHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcC--CCcHHHHHH
Confidence            321  1     123344444332222235689999999999998542  22222222 35778888887  568999999


Q ss_pred             HHHHHHHHhcCChhhH--HHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhc
Q 010533          421 VMSIITVLSLRSPENA--ARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR  475 (508)
Q Consensus       421 a~~aL~~La~~~~~~~--~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~  475 (508)
                      ++++|..++..-+...  ... -...++.+++.|..   ++.++..|||+|.+++..
T Consensus       431 a~~~l~~l~~~~~~~~~~~~~-~~~~l~~l~~~l~~---~~~v~~~a~~al~~l~~~  483 (861)
T 2bpt_A          431 TAWCIGRIADSVAESIDPQQH-LPGVVQACLIGLQD---HPKVATNCSWTIINLVEQ  483 (861)
T ss_dssp             HHHHHHHHHHHHGGGSCTTTT-HHHHHHHHHHHHTS---CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcCCHHH-HHHHHHHHHHHhcc---ChHHHHHHHHHHHHHHHh
Confidence            9999999984211100  000 12346778888843   378999999999998753

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.18  E-value=2.2e-05  Score=81.24  Aligned_cols=272  Identities=9%  Similarity=-0.012  Sum_probs=159.5

Q ss_pred             hHHHHHHHHHHHHHHhCCCCC-hhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcch--hHHHhcCC
Q 010533          142 DLNEMMGLFDKLIELCGGNEG-SVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST--ETFRTGGG  218 (508)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~-~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~--~~i~~~gg  218 (508)
                      +......++..|+.+|+.  . +..-... -...+|.++.+|+... .+.+++..+++++..++..-+..  ......-.
T Consensus       143 ~~~~r~~al~~l~~l~~~--~~~~~~~~~-~~~ll~~l~~~l~~~~-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l  218 (462)
T 1ibr_B          143 TEHMKESTLEAIGYICQD--IDPEQLQDK-SNEILTAIIQGMRKEE-PSNNVKLAATNALLNSLEFTKANFDKESERHFI  218 (462)
T ss_dssp             CHHHHHHHHHHHHHHHHH--SCGGGTGGG-HHHHHHHHHHHHSTTC-CCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHh--CCchhhHhH-HHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            345566788888888863  1 1110000 0236777888886631 15788888999998865421100  00000012


Q ss_pred             hHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCC------
Q 010533          219 PKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPD------  292 (508)
Q Consensus       219 i~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~d------  292 (508)
                      ++.+.+.+.  ..+.+++..++++|..++......-...+..+.++.++..++..++++...+++.+..++...      
T Consensus       219 ~~~l~~~~~--~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~  296 (462)
T 1ibr_B          219 MQVVCEATQ--CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIE  296 (462)
T ss_dssp             HHHHHHHTT--CSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333444443  457899999999999987554321111121266777888887766678888888888776321      


Q ss_pred             ------cchhhhhhcchHHHHHHhcCCHHHHHHHHhcCC------ChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHH
Q 010533          293 ------DDQVVASQVYGYARRFAKIGIARALVHSLHAGL------SSPSLISASIALKAVAVNDEICKSVAENGGIDALL  360 (508)
Q Consensus       293 ------d~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~------d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv  360 (508)
                            +.+..........+... ...+|.++..|....      +..+...++.+|..|+..-.  ..+. ...++.+.
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~~~-~~~~~~l~  372 (462)
T 1ibr_B          297 ASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIV-PHVLPFIK  372 (462)
T ss_dssp             HCCTTCSSSCSSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TTHH-HHHHHHHH
T ss_pred             cccccccCCCccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HHHH-HHHHHHHH
Confidence                  00000000011111111 135677777776431      23577788888888875321  1111 12344555


Q ss_pred             HHHhccCCCCcHHHHHHHHHHHHHhhCCch---hHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcC
Q 010533          361 RCIDDSGLQGNKTVARICCSLLSKLAGSDS---NKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLR  431 (508)
Q Consensus       361 ~lL~~~~~~~~~~v~~~al~aL~~La~~~~---~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~  431 (508)
                      ..|.+    .+..++..++.+|+.++....   .+..+  ...+|.|+.+|.  ..++.|+..||++|..++..
T Consensus       373 ~~l~~----~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~--d~~~~Vr~~a~~~l~~~~~~  438 (462)
T 1ibr_B          373 EHIKN----PDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMK--DPSVVVRDTAAWTVGRICEL  438 (462)
T ss_dssp             HHTTC----SSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGG--CSCHHHHHHHHHHHHHHHHH
T ss_pred             HHhcC----CChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHh
Confidence            55543    356899999999999985322   11112  457899999998  66799999999999999853

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.18  E-value=6.5e-05  Score=84.29  Aligned_cols=305  Identities=12%  Similarity=0.072  Sum_probs=178.5

Q ss_pred             hHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcch--hHHHhcCCh
Q 010533          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST--ETFRTGGGP  219 (508)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~--~~i~~~ggi  219 (508)
                      +......++..|..++.. .++..-.... ...+|.|+..++.   .+..++..+++++..++..-...  ..-.-...+
T Consensus       382 ~~~~r~~a~~~l~~i~~~-~~~~~~~~~l-~~il~~l~~~l~d---~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l  456 (861)
T 2bpt_A          382 NWRNREAAVMAFGSIMDG-PDKVQRTYYV-HQALPSILNLMND---QSLQVKETTAWCIGRIADSVAESIDPQQHLPGVV  456 (861)
T ss_dssp             SHHHHHHHHHHHHHTSSS-SCHHHHHHHH-HHHHHHHHHGGGC---SCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcC-CCHHHHHHHH-HHHHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHH
Confidence            455556677788887753 1111111111 2357777777765   36777777777777665421100  000112345


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhhcCC-----hhhHHHHHHcCcHHHHHHHHhcCC--hHHHHHHHHHHHHhcCCC
Q 010533          220 KLLVNILIDGNEDPEILNSGFAVVAASATGN-----EVVKESYMELKIDELILEILSRQR--NDSIQSLYDAIRVLLTPD  292 (508)
Q Consensus       220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~-----e~nr~~i~~~G~i~~Lv~lL~~~~--~~~~~~A~~aL~~L~~~d  292 (508)
                      +.+++.|..   ++.++..++++|..++...     +.....+  ...++.|+.++.+.+  ..++..++.+|..++...
T Consensus       457 ~~l~~~l~~---~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~  531 (861)
T 2bpt_A          457 QACLIGLQD---HPKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTTMVEYA  531 (861)
T ss_dssp             HHHHHHHTS---CHHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhcc---ChHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHc
Confidence            667777753   3889999999998876421     1111111  235778888887543  367778888898887433


Q ss_pred             cchhhhhhcchHHHHHHhcCCHHHHHHHHhcC--------C------ChhHHHHHHHHHHHhhcC-hhhHhHHhhcCCHH
Q 010533          293 DDQVVASQVYGYARRFAKIGIARALVHSLHAG--------L------SSPSLISASIALKAVAVN-DEICKSVAENGGID  357 (508)
Q Consensus       293 d~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~--------~------d~~~~~~a~~aL~~La~~-~e~~~~i~e~Ggi~  357 (508)
                      ....     ..+..     ..++.+++.|...        +      ...++..++.+|.+++.. .+......+ ..++
T Consensus       532 ~~~~-----~~~~~-----~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~  600 (861)
T 2bpt_A          532 TDTV-----AETSA-----SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMG  600 (861)
T ss_dssp             CGGG-----HHHHH-----HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHH
T ss_pred             chhh-----HHHHH-----HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHH
Confidence            2111     11222     3467777777642        1      134566788888887752 221111111 2456


Q ss_pred             HHHHHHhccCCCCcHHHHHHHHHHHHHhhCC--chhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhh
Q 010533          358 ALLRCIDDSGLQGNKTVARICCSLLSKLAGS--DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPEN  435 (508)
Q Consensus       358 ~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~--~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~  435 (508)
                      .++.++.... . + .+.+.++.++..++..  ++....+-  ..+|.|+..+.  .+++.++..++.++..++..-.+.
T Consensus       601 ~l~~~l~~~~-~-~-~v~~~~~~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~--~~~~~vr~~a~~~l~~l~~~~~~~  673 (861)
T 2bpt_A          601 LFFRLLEKKD-S-A-FIEDDVFYAISALAASLGKGFEKYLE--TFSPYLLKALN--QVDSPVSITAVGFIADISNSLEED  673 (861)
T ss_dssp             HHHHHHHSTT-G-G-GTHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHH--CTTSHHHHHHHHHHHHHHHHTGGG
T ss_pred             HHHHHHccCC-C-C-cHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHhchh
Confidence            6777777531 1 1 5788899999988732  22332222  26788888886  566789999999999988543332


Q ss_pred             HHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhc
Q 010533          436 AARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR  475 (508)
Q Consensus       436 ~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~  475 (508)
                      ....+ ...++.+++.+.....+..++..+..++..++..
T Consensus       674 ~~~~~-~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~  712 (861)
T 2bpt_A          674 FRRYS-DAMMNVLAQMISNPNARRELKPAVLSVFGDIASN  712 (861)
T ss_dssp             GHHHH-HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHH
T ss_pred             ccchH-HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHH
Confidence            22222 2356777777764322467888899999888764

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.17  E-value=5.4e-05  Score=85.12  Aligned_cols=283  Identities=7%  Similarity=0.017  Sum_probs=169.7

Q ss_pred             CCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHh---cCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q 010533          172 NGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRT---GGGPKLLVNILIDGNEDPEILNSGFAVVAASAT  248 (508)
Q Consensus       172 ~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~---~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~  248 (508)
                      ...+|.|+..+.+.. .+..++..++.++..++....  .+...   ...++.++..|.....+..++..+++++..++.
T Consensus       127 ~~ll~~l~~~l~~~~-~~~~~r~~al~~l~~l~~~~~--~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~  203 (876)
T 1qgr_A          127 PELIPQLVANVTNPN-STEHMKESTLEAIGYICQDID--PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE  203 (876)
T ss_dssp             TTHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHHSC--HHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHhcC--HhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence            346788888887631 156777788888888775321  11121   223555666665432368899999999998764


Q ss_pred             CChhh--HHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCC
Q 010533          249 GNEVV--KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLS  326 (508)
Q Consensus       249 ~~e~n--r~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d  326 (508)
                      .-+.+  .... ....++.+...+...+.++...++.+|..+.....         +..........++.++..+.+ .+
T Consensus       204 ~~~~~~~~~~~-~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~---------~~~~~~~~~~l~~~~~~~~~~-~~  272 (876)
T 1qgr_A          204 FTKANFDKESE-RHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY---------QYMETYMGPALFAITIEAMKS-DI  272 (876)
T ss_dssp             GCHHHHTSHHH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSG---------GGCHHHHTTTHHHHHHHHHTC-SS
T ss_pred             HHHHHHHhHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhH---------HHHHHHHHHHHHHHHHHHhcC-Cc
Confidence            32221  1111 11246666666655555777888888888763211         011111222456777776654 35


Q ss_pred             hhHHHHHHHHHHHhhcChh----------------------hHhHHhhcCCHHHHHHHHhccCC---CCcHHHHHHHHHH
Q 010533          327 SPSLISASIALKAVAVNDE----------------------ICKSVAENGGIDALLRCIDDSGL---QGNKTVARICCSL  381 (508)
Q Consensus       327 ~~~~~~a~~aL~~La~~~e----------------------~~~~i~e~Ggi~~Lv~lL~~~~~---~~~~~v~~~al~a  381 (508)
                      +.+...++..+..++....                      ..+... ...++.++..|....+   +.+..+...+..+
T Consensus       273 ~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~  351 (876)
T 1qgr_A          273 DEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVC  351 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHH
Confidence            6677788877777764310                      000000 1235566777753211   1234688888888


Q ss_pred             HHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHhcCcHHHHHHHHHcCCCcHH
Q 010533          382 LSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSP-ENAARAMEAGSGDLAIQAMLKFPNAQQ  460 (508)
Q Consensus       382 L~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~-~~~~~i~~~G~i~~Lv~~L~~h~~~~~  460 (508)
                      |..|+....  ..++. ..++.+...+.  ..+..+++.++.+|..++.+.. +.....+ ...++.++..|..  .++.
T Consensus       352 l~~l~~~~~--~~~~~-~~l~~l~~~l~--~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d--~~~~  423 (876)
T 1qgr_A          352 LMLLATCCE--DDIVP-HVLPFIKEHIK--NPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKD--PSVV  423 (876)
T ss_dssp             HHHHHHHHG--GGGHH-HHHHHHHHHTT--CSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTC--SSHH
T ss_pred             HHHHHHHCc--HhhHH-HHHHHHHHHcc--CCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCC--CCHH
Confidence            888874211  11121 24455666665  5678999999999999996543 3333333 3468888888853  4688


Q ss_pred             HHHHHHHHHHHhhhcCc
Q 010533          461 LQRSSCFMIRNLVARNP  477 (508)
Q Consensus       461 vq~~A~~aL~nL~~~~~  477 (508)
                      |+..|||+|.+++...+
T Consensus       424 vr~~a~~~l~~~~~~~~  440 (876)
T 1qgr_A          424 VRDTAAWTVGRICELLP  440 (876)
T ss_dssp             HHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHHHHHHHhCc
Confidence            99999999999987543

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=97.99  E-value=0.0025  Score=66.47  Aligned_cols=287  Identities=12%  Similarity=0.113  Sum_probs=169.3

Q ss_pred             HHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCc---chhHH-HhcCChHH-HHHHHhcCCCCHHHHHHHHHH
Q 010533          168 VATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQ---STETF-RTGGGPKL-LVNILIDGNEDPEILNSGFAV  242 (508)
Q Consensus       168 ~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~---~~~~i-~~~ggi~~-Lv~lL~~~~~~~~v~~~a~~~  242 (508)
                      ......++..++++|+..  ...++....+.-+.-++.+.+   .+..+ .+...... +..... ..++.-.+..++.+
T Consensus        72 l~~~~~~~~~~l~lL~~~--~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~-~~dd~~~ll~a~~l  148 (480)
T 1ho8_A           72 FKVNGKTLIPLIHLLSTS--DNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSL-KGDFQTVLISGFNV  148 (480)
T ss_dssp             --CSSTTHHHHHHHHHSC--CCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCS-CSSHHHHHHHHHHH
T ss_pred             hhcCchHHHHHHHHHhhc--ChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHh-cccchHHHHHHHHH
Confidence            444456788999999875  467888888888888887654   44333 33332221 222111 23444555666666


Q ss_pred             HHHhhcCCh---hhHHHHHHcCcHHHHHHHHhcCC-hHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcC--CHHH
Q 010533          243 VAASATGNE---VVKESYMELKIDELILEILSRQR-NDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIG--IARA  316 (508)
Q Consensus       243 L~~l~~~~e---~nr~~i~~~G~i~~Lv~lL~~~~-~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g--~i~~  316 (508)
                      +..++....   +.-..+....   -++..|++.. ...+--+...|..|...+..|.          .+.+.+  .+++
T Consensus       149 ~~ll~~~~~~~~~~l~~l~~~~---~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~----------~f~~~~~~~~~~  215 (480)
T 1ho8_A          149 VSLLVQNGLHNVKLVEKLLKNN---NLINILQNIEQMDTCYVCIRLLQELAVIPEYRD----------VIWLHEKKFMPT  215 (480)
T ss_dssp             HHHHTSTTTCCHHHHHHHHHCH---HHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHH----------HHHTTHHHHHHH
T ss_pred             HHHHhccCCccHhHHHHHhhhH---HHHHHhccccCCchHHHHHHHHHHHhcchhHHH----------HHHHcccchhHH
Confidence            555432111   1111222110   3445565532 2333346667777776655443          344332  3666


Q ss_pred             HHHHHhcC-------------C---ChhHHHHHHHHHHHhhcChhhHhHHhhcCCH--HHHHHHHhccCCCCcHHHHHHH
Q 010533          317 LVHSLHAG-------------L---SSPSLISASIALKAVAVNDEICKSVAENGGI--DALLRCIDDSGLQGNKTVARIC  378 (508)
Q Consensus       317 Lv~lL~~~-------------~---d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi--~~Lv~lL~~~~~~~~~~v~~~a  378 (508)
                      ++.+++..             +   ...++..++.++|-|+..++.+..+...+..  ..|+..++....+   .|.+-+
T Consensus       216 l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KE---KvvRv~  292 (480)
T 1ho8_A          216 LFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKE---KVSRLC  292 (480)
T ss_dssp             HHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSH---HHHHHH
T ss_pred             HHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccc---hhHHHH
Confidence            66554421             1   1356788999999999999998888877643  4566777775433   899999


Q ss_pred             HHHHHHhhCCc--h---h-HHHHHhCCcHHHHHHHH-hccCCCH------------------------------------
Q 010533          379 CSLLSKLAGSD--S---N-KSAIIENGGMDKLIVVS-ARFSDDA------------------------------------  415 (508)
Q Consensus       379 l~aL~~La~~~--~---~-k~~Iv~~Ggl~~Lv~lL-~~~~~~~------------------------------------  415 (508)
                      +.+|+||...+  +   . ++.++..++++ +++.| .++-+++                                    
T Consensus       293 la~l~Nll~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~  371 (480)
T 1ho8_A          293 ISIILQCCSTRVKQHKKVIKQLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLC  371 (480)
T ss_dssp             HHHHHHTTSSSSTTHHHHHHHHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHhcccchhhhhHHHHHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcc
Confidence            99999997543  1   1 22343344544 44444 3322322                                    


Q ss_pred             ------------------------------------------------HHHHHHHHHHHHHhcCChhhHHHHHhcCcHHH
Q 010533          416 ------------------------------------------------SVLQEVMSIITVLSLRSPENAARAMEAGSGDL  447 (508)
Q Consensus       416 ------------------------------------------------~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~  447 (508)
                                                                      .+..-||-=|..++...|+-+..+-+.|+=+.
T Consensus       372 WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~  451 (480)
T 1ho8_A          372 WSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKAD  451 (480)
T ss_dssp             CCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHH
T ss_pred             cCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHH
Confidence                                                            12222444455555566777777777888888


Q ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHhhhcC
Q 010533          448 AIQAMLKFPNAQQLQRSSCFMIRNLVARN  476 (508)
Q Consensus       448 Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~  476 (508)
                      ++++| .|+ ++.|+.+|..|+.-+..+|
T Consensus       452 VM~Lm-~h~-d~~Vr~~AL~avQklm~~~  478 (480)
T 1ho8_A          452 IMELL-NHS-DSRVKYEALKATQAIIGYT  478 (480)
T ss_dssp             HHHHT-SCS-SHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHh-cCC-CHHHHHHHHHHHHHHHHhc
Confidence            88888 464 6899999999998877654

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.91  E-value=0.00069  Score=74.06  Aligned_cols=266  Identities=13%  Similarity=0.117  Sum_probs=160.5

Q ss_pred             CcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHh----cC-C----------CCHHHHH
Q 010533          173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILI----DG-N----------EDPEILN  237 (508)
Q Consensus       173 Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~----~~-~----------~~~~v~~  237 (508)
                      +.++.|..+|..   .+..++..|+.++..++....  ..+.  ..++.+++.|.    .. .          .++..+.
T Consensus       187 ~~~~~l~~lL~d---~d~~V~~~a~~~l~~i~~~~~--~~~~--~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi  259 (621)
T 2vgl_A          187 DWTSRVVHLLND---QHLGVVTAATSLITTLAQKNP--EEFK--TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSV  259 (621)
T ss_dssp             SCHHHHHHHTTC---SCHHHHHHHHHHHHHHHHHCH--HHHT--THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHH
T ss_pred             hHHHHHHHHhCC---CCccHHHHHHHHHHHHHHhCh--HHHH--HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHH
Confidence            788899999965   478899999999888876431  1111  23455555443    21 1          1689999


Q ss_pred             HHHHHHHHhhcC-ChhhHHHHHHcCcHHHHHHHHhc-C----------ChHHHHHHHHHHHHhcCCCcchhhhhhcchHH
Q 010533          238 SGFAVVAASATG-NEVVKESYMELKIDELILEILSR-Q----------RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYA  305 (508)
Q Consensus       238 ~a~~~L~~l~~~-~e~nr~~i~~~G~i~~Lv~lL~~-~----------~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~  305 (508)
                      ..+++|+..+.. ++..+..+.+  .+..++..+.. .          ...++-+++.++..+....          +  
T Consensus       260 ~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~----------~--  325 (621)
T 2vgl_A          260 KLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEP----------N--  325 (621)
T ss_dssp             HHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCH----------H--
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcH----------H--
Confidence            999999988753 3444554443  33444433211 1          1266777888888775211          1  


Q ss_pred             HHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHh
Q 010533          306 RRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKL  385 (508)
Q Consensus       306 ~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~L  385 (508)
                        +.. .++..|..+|.+ ++++++.-+..+|..++........+.  .-...++.+|....   +..|...++.+|..|
T Consensus       326 --~~~-~~~~~L~~~L~~-~~~niry~aL~~l~~l~~~~~~~~~~~--~~~~~i~~~L~~d~---d~~Ir~~aL~lL~~l  396 (621)
T 2vgl_A          326 --LLV-RACNQLGQFLQH-RETNLRYLALESMCTLASSEFSHEAVK--THIETVINALKTER---DVSVRQRAVDLLYAM  396 (621)
T ss_dssp             --HHH-HHHHHHHHHSSC-SCHHHHHHHHHHHHHHTTCTTTHHHHH--TTHHHHHHHHTTCC---CHHHHHHHHHHHHHH
T ss_pred             --HHH-HHHHHHHHHhcC-CCcchHHHHHHHHHHHHhccCcHHHHH--HHHHHHHHHhccCC---CHhHHHHHHHHHHHH
Confidence              111 356778888864 478888888889988887542112222  24567778887222   358999999999999


Q ss_pred             hCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHH
Q 010533          386 AGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSS  465 (508)
Q Consensus       386 a~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A  465 (508)
                      + ++.|...|+     ..|...+.  ..+...+..++.++..+|.+.+.....     .+..|++++....+  .+..++
T Consensus       397 ~-~~~Nv~~Iv-----~eL~~yl~--~~d~~~~~~~v~~I~~la~k~~~~~~~-----~v~~Ll~ll~~~~~--~v~~ev  461 (621)
T 2vgl_A          397 C-DRSNAQQIV-----AEMLSYLE--TADYSIREEIVLKVAILAEKYAVDYTW-----YVDTILNLIRIAGD--YVSEEV  461 (621)
T ss_dssp             C-CHHHHHHHH-----HHHHHHHH--HCCHHHHHHHHHHHHHHHHHHCSSTHH-----HHHHHHHHHHHHGG--GSCSHH
T ss_pred             c-ChhhHHHHH-----HHHHHHHH--hcCHHHHHHHHHHHHHHHHhcCCcHHH-----HHHHHHHHHHhhcc--cchHHH
Confidence            7 445555554     36667776  457889999999999998654433222     23445555543111  122233


Q ss_pred             HHHHHHhhhcCccchHHH
Q 010533          466 CFMIRNLVARNPENSFCS  483 (508)
Q Consensus       466 ~~aL~nL~~~~~e~~~~~  483 (508)
                      ...++.++.++|+.+.+.
T Consensus       462 ~~~l~~ii~~~~~~~~~~  479 (621)
T 2vgl_A          462 WYRVIQIVINRDDVQGYA  479 (621)
T ss_dssp             HHHHHHHHGGGCSCHHHH
T ss_pred             HHHHHHHHhCChhHHHHH
Confidence            445555555555554443

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=97.90  E-value=0.0012  Score=68.81  Aligned_cols=241  Identities=10%  Similarity=0.062  Sum_probs=152.4

Q ss_pred             HHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCC--hHHHHHHHhcC-------------CC--CHHHHHHHH
Q 010533          178 VCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGG--PKLLVNILIDG-------------NE--DPEILNSGF  240 (508)
Q Consensus       178 Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~gg--i~~Lv~lL~~~-------------~~--~~~v~~~a~  240 (508)
                      ++..|.+.  ...+.+.-|++.|..|+...+-|..|.+.+|  ++.+++++.+.             ++  ...++-.++
T Consensus       172 ~~~~L~~~--~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l  249 (480)
T 1ho8_A          172 LINILQNI--EQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL  249 (480)
T ss_dssp             HHHHHHCT--TCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred             HHHHhccc--cCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence            44445442  1233344466666666666666777876554  67776665532             11  345677888


Q ss_pred             HHHHHhhcCChhhHHHHHHcCcH--HHHHHHHhcCC-hHHHHHHHHHHHHhcCCCc-chhhhhhcchHHHHHH-hcCCHH
Q 010533          241 AVVAASATGNEVVKESYMELKID--ELILEILSRQR-NDSIQSLYDAIRVLLTPDD-DQVVASQVYGYARRFA-KIGIAR  315 (508)
Q Consensus       241 ~~L~~l~~~~e~nr~~i~~~G~i--~~Lv~lL~~~~-~~~~~~A~~aL~~L~~~dd-~r~~~~~a~~~~~~i~-~~g~i~  315 (508)
                      -+++-+ +-++...+.+...+.+  +.|+++++... +.+.|-+.++|+||...+. ..      ......++ ..++ +
T Consensus       250 l~iWlL-SF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~------~~~~~~~~~~~~~-l  321 (480)
T 1ho8_A          250 LLIWLL-TFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQH------KKVIKQLLLLGNA-L  321 (480)
T ss_dssp             HHHHHH-TTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTH------HHHHHHHHHHHCH-H
T ss_pred             HHHHHH-HcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhh------hhHHHHHHHHccc-h
Confidence            888877 4555566666666644  67778888654 4788989999999986431 00      11223333 3344 5


Q ss_pred             HHHHHHhcCC--ChhHHHHHHHHH-------HHhhcCh------------------------hhHhHHhhcC--CHHHHH
Q 010533          316 ALVHSLHAGL--SSPSLISASIAL-------KAVAVND------------------------EICKSVAENG--GIDALL  360 (508)
Q Consensus       316 ~Lv~lL~~~~--d~~~~~~a~~aL-------~~La~~~------------------------e~~~~i~e~G--gi~~Lv  360 (508)
                      ++++.|....  |+++..++-...       ..++.-+                        ||..++.+.+  .++.|+
T Consensus       322 ~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~  401 (480)
T 1ho8_A          322 PTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLI  401 (480)
T ss_dssp             HHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHH
T ss_pred             HHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHH
Confidence            5666666533  676665543322       2233222                        3444555433  267888


Q ss_pred             HHHhccC------CCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010533          361 RCIDDSG------LQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL  430 (508)
Q Consensus       361 ~lL~~~~------~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~  430 (508)
                      ++|....      +..++.++.-||.=|+.++. .|.+|..+-+.||=+.++++|.  .+++.|+.+|+.++--+..
T Consensus       402 ~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~--h~d~~Vr~~AL~avQklm~  476 (480)
T 1ho8_A          402 ELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLN--HSDSRVKYEALKATQAIIG  476 (480)
T ss_dssp             HHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTS--CSSHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhc--CCCHHHHHHHHHHHHHHHH
Confidence            9997421      12246788899999999985 7888988888899999999998  5789999999999877653

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.79  E-value=0.0058  Score=68.96  Aligned_cols=246  Identities=10%  Similarity=0.064  Sum_probs=148.9

Q ss_pred             cHHHHHHHHhcccC--C---CHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q 010533          174 GVELVCSICYKMRC--G---SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASAT  248 (508)
Q Consensus       174 avp~Lv~lL~~~~~--~---~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~  248 (508)
                      ++..|...|.+.+.  +   ...++..|.-.|....-+..+ +     ..++.|..+|..  ++..+.+.+..+|+.+-.
T Consensus       430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-e-----ev~e~L~~~L~d--d~~~~~~~AalALGli~v  501 (963)
T 4ady_A          430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-I-----EVYEALKEVLYN--DSATSGEAAALGMGLCML  501 (963)
T ss_dssp             HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-H-----HHHHHHHHHHHT--CCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-H-----HHHHHHHHHHhc--CCHHHHHHHHHHHhhhhc
Confidence            46667777765320  1   133444444445443222211 1     235567777763  334455566666765522


Q ss_pred             CChhhHHHHHHcCcHHHHHHHHhcC-ChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCCh
Q 010533          249 GNEVVKESYMELKIDELILEILSRQ-RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSS  327 (508)
Q Consensus       249 ~~e~nr~~i~~~G~i~~Lv~lL~~~-~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~  327 (508)
                      +.- |.+      ++..|+..+... ++.+.+.++.+|..+...+.                  ..++.++++|....++
T Consensus       502 GTg-n~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~------------------e~~~~li~~L~~~~dp  556 (963)
T 4ady_A          502 GTG-KPE------AIHDMFTYSQETQHGNITRGLAVGLALINYGRQ------------------ELADDLITKMLASDES  556 (963)
T ss_dssp             TCC-CHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG------------------GGGHHHHHHHHHCSCH
T ss_pred             ccC-CHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh------------------HHHHHHHHHHHhCCCH
Confidence            221 111      245555555443 44788888888887665442                  4578888888876677


Q ss_pred             hHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHH
Q 010533          328 PSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVV  407 (508)
Q Consensus       328 ~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~l  407 (508)
                      .+...++.+++--.....+..      .|+.|+..+.+..   +.+|+..|+.+|+.++..+.        ..++.+++.
T Consensus       557 ~vRygaa~alglAyaGTGn~~------aIq~LL~~~~~d~---~d~VRraAViaLGlI~~g~~--------e~v~rlv~~  619 (963)
T 4ady_A          557 LLRYGGAFTIALAYAGTGNNS------AVKRLLHVAVSDS---NDDVRRAAVIALGFVLLRDY--------TTVPRIVQL  619 (963)
T ss_dssp             HHHHHHHHHHHHHTTTSCCHH------HHHHHHHHHHHCS---CHHHHHHHHHHHHHHTSSSC--------SSHHHHTTT
T ss_pred             HHHHHHHHHHHHHhcCCCCHH------HHHHHHHHhccCC---cHHHHHHHHHHHHhhccCCH--------HHHHHHHHH
Confidence            676666666643222211111      2455666665432   34799999999998764322        356778886


Q ss_pred             HhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccc
Q 010533          408 SARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPEN  479 (508)
Q Consensus       408 L~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~  479 (508)
                      |.+ ..++.++..++.+|..++.+++..       .++..|..++  |..+..|++.|..||..+..++.+.
T Consensus       620 L~~-~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~--~D~d~~Vrq~Ai~ALG~Ig~gtnna  681 (963)
T 4ady_A          620 LSK-SHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLT--KDPVDFVRQAAMIALSMILIQQTEK  681 (963)
T ss_dssp             GGG-CSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHH--TCSSHHHHHHHHHHHHHHSTTCCTT
T ss_pred             HHh-cCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHc--cCCCHHHHHHHHHHHHHHhcCCccc
Confidence            654 458999999999999999887741       1345555555  4567889999999999988765554

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.70  E-value=0.042  Score=59.84  Aligned_cols=296  Identities=11%  Similarity=0.091  Sum_probs=182.6

Q ss_pred             HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHH
Q 010533          122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA  201 (508)
Q Consensus       122 ~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa  201 (508)
                      -++..++.-+.+.       +.-...-|++.|..+.    .++.    . ...+|.+..+|.+.+ .++-+...|+-++.
T Consensus       111 L~iN~l~kDl~~~-------n~~ir~lALr~L~~i~----~~e~----~-~~l~~~v~~~l~~~d-~~~~VRK~A~~al~  173 (621)
T 2vgl_A          111 LINNAIKNDLASR-------NPTFMGLALHCIANVG----SREM----A-EAFAGEIPKILVAGD-TMDSVKQSAALCLL  173 (621)
T ss_dssp             HHHHHHHHHHHSC-------CHHHHHHHHHHHHHHC----CHHH----H-HHHTTHHHHHHHCSS-SCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCC-------CHHHHHHHHHHhhccC----CHHH----H-HHHHHHHHHHHhCCC-CCHHHHHHHHHHHH
Confidence            3455555555554       4554555666666653    3331    1 135677788883221 47788888888887


Q ss_pred             HhhcCCcchhHHHh-cCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHh----cC---
Q 010533          202 LLVHDVQSTETFRT-GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILS----RQ---  273 (508)
Q Consensus       202 ~l~~~~~~~~~i~~-~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~----~~---  273 (508)
                      .+..-.   ++.+. .+.++.+.++|.  ..++.|+..|+.++..++..++.   .+  ...++.++..|.    .+   
T Consensus       174 kl~~~~---p~~~~~~~~~~~l~~lL~--d~d~~V~~~a~~~l~~i~~~~~~---~~--~~~~~~~~~~L~~ll~~~~~~  243 (621)
T 2vgl_A          174 RLYRTS---PDLVPMGDWTSRVVHLLN--DQHLGVVTAATSLITTLAQKNPE---EF--KTSVSLAVSRLSRIVTSASTD  243 (621)
T ss_dssp             HHHHHC---GGGCCCCSCHHHHHHHTT--CSCHHHHHHHHHHHHHHHHHCHH---HH--TTHHHHHHHHHHHHHHCCSSS
T ss_pred             HHHHhC---hhhcCchhHHHHHHHHhC--CCCccHHHHHHHHHHHHHHhChH---HH--HHHHHHHHHHHHHHHhCCCCC
Confidence            776533   23333 477899999996  45889999999999998765543   21  134555555554    21   


Q ss_pred             ----------ChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCC--------C--hhHHHHH
Q 010533          274 ----------RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL--------S--SPSLISA  333 (508)
Q Consensus       274 ----------~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~--------d--~~~~~~a  333 (508)
                                ++-.+-.....|..++..+|..        ....+.+  .++.++..+.+.+        +  ..++.++
T Consensus       244 ~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~--------~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea  313 (621)
T 2vgl_A          244 LQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPA--------VRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEA  313 (621)
T ss_dssp             CSTTEETTEESHHHHHHHHHHGGGSSSCSSHH--------HHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHH
T ss_pred             ccchhhcCCCCchHHHHHHHHHHHhCCCCCHH--------HHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHH
Confidence                      1223334555565565433321        1222221  3444444332211        2  2677888


Q ss_pred             HHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCC
Q 010533          334 SIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSD  413 (508)
Q Consensus       334 ~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~  413 (508)
                      +.++..+...++....     ++..|..+|.+.    +..++-.++..|..++........+.  .-...++..|. +.+
T Consensus       314 ~~~i~~l~~~~~~~~~-----~~~~L~~~L~~~----~~niry~aL~~l~~l~~~~~~~~~~~--~~~~~i~~~L~-~d~  381 (621)
T 2vgl_A          314 ISLIIHHDSEPNLLVR-----ACNQLGQFLQHR----ETNLRYLALESMCTLASSEFSHEAVK--THIETVINALK-TER  381 (621)
T ss_dssp             HHHHHHHCCCHHHHHH-----HHHHHHHHSSCS----CHHHHHHHHHHHHHHTTCTTTHHHHH--TTHHHHHHHHT-TCC
T ss_pred             HHHHHhcCCcHHHHHH-----HHHHHHHHhcCC----CcchHHHHHHHHHHHHhccCcHHHHH--HHHHHHHHHhc-cCC
Confidence            8888888755544432     346677777632    34899999999999986432222332  35677888885 245


Q ss_pred             CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhc
Q 010533          414 DASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR  475 (508)
Q Consensus       414 ~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~  475 (508)
                      +..|+..++-+|..|+  +++|...++.     .|.+.+..  .+...++.+..+|..++.+
T Consensus       382 d~~Ir~~aL~lL~~l~--~~~Nv~~Iv~-----eL~~yl~~--~d~~~~~~~v~~I~~la~k  434 (621)
T 2vgl_A          382 DVSVRQRAVDLLYAMC--DRSNAQQIVA-----EMLSYLET--ADYSIREEIVLKVAILAEK  434 (621)
T ss_dssp             CHHHHHHHHHHHHHHC--CHHHHHHHHH-----HHHHHHHH--CCHHHHHHHHHHHHHHHHH
T ss_pred             CHhHHHHHHHHHHHHc--ChhhHHHHHH-----HHHHHHHh--cCHHHHHHHHHHHHHHHHh
Confidence            7899999999999998  6778777653     46666654  3567788888889888765

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=97.49  E-value=0.00065  Score=79.87  Aligned_cols=269  Identities=11%  Similarity=0.057  Sum_probs=162.2

Q ss_pred             HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHh
Q 010533          124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL  203 (508)
Q Consensus       124 l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l  203 (508)
                      +..|...+.+.       |.+....|+..|.+..+.+ .... ..-.....++.|++.|.+   .+..++..|+.+|..+
T Consensus         8 l~~lL~~l~s~-------d~~~R~~A~~~L~~~l~~~-~~~~-~~~~~~~il~~Ll~~L~d---~~~~vR~~A~~~L~~l   75 (1230)
T 1u6g_C            8 ISNLLEKMTSS-------DKDFRFMATNDLMTELQKD-SIKL-DDDSERKVVKMILKLLED---KNGEVQNLAVKCLGPL   75 (1230)
T ss_dssp             HHHHHHHTTCS-------SHHHHHHHHHHHHHHTSSS-CCSC-CTTHHHHHHHHHHHHTTC---SSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCC-------CHhHHHHHHHHHHHHHccc-ccCC-ChhHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHH
Confidence            44444555554       7888888999998887641 0100 000112457788888874   4788888888888887


Q ss_pred             hcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhh------HHHHHHcCcHHHHHHHHhc-CChH
Q 010533          204 VHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV------KESYMELKIDELILEILSR-QRND  276 (508)
Q Consensus       204 ~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~n------r~~i~~~G~i~~Lv~lL~~-~~~~  276 (508)
                      ......  .. -...++.++..|.  .++..++..++.+|+.++......      .... -...+|.|+..+.. .+..
T Consensus        76 ~~~~~~--~~-~~~i~~~Ll~~l~--d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~-~~~llp~L~~~l~~~~~~~  149 (1230)
T 1u6g_C           76 VSKVKE--YQ-VETIVDTLCTNML--SDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQEDVS  149 (1230)
T ss_dssp             HTTSCH--HH-HHHHHHHHHHHTT--CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCCSCHH
T ss_pred             HHhCCH--HH-HHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH-HHHHHHHHHHHHcCCCchH
Confidence            754321  11 1123455555554  345678888888888876432211      0111 12468889999974 4557


Q ss_pred             HHHHHHHHHHHhcCC--CcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcC
Q 010533          277 SIQSLYDAIRVLLTP--DDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENG  354 (508)
Q Consensus       277 ~~~~A~~aL~~L~~~--dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~G  354 (508)
                      ++..|+.+|..++..  +..       ..+..     ..++.|+..|.+ .++.+...++.+|..++.....  .+. ..
T Consensus       150 ~~~~al~~l~~~~~~~~~~l-------~~~~~-----~ll~~l~~~L~~-~~~~vR~~a~~al~~l~~~~~~--~~~-~~  213 (1230)
T 1u6g_C          150 VQLEALDIMADMLSRQGGLL-------VNFHP-----SILTCLLPQLTS-PRLAVRKRTIIALGHLVMSCGN--IVF-VD  213 (1230)
T ss_dssp             HHHHHHHHHHHHHHHTCSSC-------TTTHH-----HHHHHHGGGGGC-SSHHHHHHHHHHHHHHTTTC------C-TT
T ss_pred             HHHHHHHHHHHHHHHhHhHH-------HHHHH-----HHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHhcCH--HHH-HH
Confidence            777888888887731  111       01111     235666666664 3567888999999998864221  111 12


Q ss_pred             CHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC-ch-hHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCC
Q 010533          355 GIDALLRCIDDSGLQGNKTVARICCSLLSKLAGS-DS-NKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRS  432 (508)
Q Consensus       355 gi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~-~~-~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~  432 (508)
                      .++.++..|....+.   .+...++.+|..++.. +. ....  -...+|.++..+.  .+++.+++.++.++..++...
T Consensus       214 ~l~~l~~~L~~~~~~---~~r~~a~~~l~~l~~~~~~~~~~~--l~~l~~~ll~~l~--d~~~~vR~~a~~~l~~l~~~~  286 (1230)
T 1u6g_C          214 LIEHLLSELSKNDSM---STTRTYIQCIAAISRQAGHRIGEY--LEKIIPLVVKFCN--VDDDELREYCIQAFESFVRRC  286 (1230)
T ss_dssp             HHHHHHHHHHHTCSS---CSCTTHHHHHHHHHHHSSGGGTTS--CTTHHHHHHHHHS--SCCTTTHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHhccCCch---hHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHC
Confidence            467888888764221   3556677888777632 11 1110  1246788888887  567889999999998887644


Q ss_pred             h
Q 010533          433 P  433 (508)
Q Consensus       433 ~  433 (508)
                      +
T Consensus       287 ~  287 (1230)
T 1u6g_C          287 P  287 (1230)
T ss_dssp             T
T ss_pred             h
Confidence            3

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=97.43  E-value=0.0031  Score=59.46  Aligned_cols=184  Identities=7%  Similarity=0.083  Sum_probs=134.3

Q ss_pred             CcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcch-hHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCh
Q 010533          173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST-ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE  251 (508)
Q Consensus       173 Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~-~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e  251 (508)
                      +.+..|..+|..   .|+.+..+++.+|-.+....+.. ....-....+.++++++  ..+..+.-.|+++|..+..+.+
T Consensus        33 ~~l~~L~~LL~d---kD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk--~~dEkval~A~r~L~~LLe~vp  107 (265)
T 3b2a_A           33 RALFLILELAGE---DDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALS--QENEKVTIKALRALGYLVKDVP  107 (265)
T ss_dssp             HHHHHHHHHTTS---SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCC--STTHHHHHHHHHHHHHHHTTCC
T ss_pred             hHHHHHHHHHhc---cchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHcCCC
Confidence            367788899866   58899999999998888754322 22233567889999986  4689999999999999987776


Q ss_pred             hhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHH
Q 010533          252 VVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLI  331 (508)
Q Consensus       252 ~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~  331 (508)
                      -....+.+  .+..|.++++++++-...+|+..|..|..-+..+                +.+..+..++ .+.|+.++.
T Consensus       108 L~~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~----------------~V~~~l~sLl-~Skd~~vK~  168 (265)
T 3b2a_A          108 MGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK----------------LVRTYINELV-VSPDLYTKV  168 (265)
T ss_dssp             BCHHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH----------------HHHHHHHHHH-TCSSHHHHH
T ss_pred             CCHHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH----------------HHHHHHHHHH-hCCChhHHH
Confidence            66666665  4678888888777667778999999884333211                3467888888 445888999


Q ss_pred             HHHHHHHHhhcCh---hhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCc
Q 010533          332 SASIALKAVAVND---EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSD  389 (508)
Q Consensus       332 ~a~~aL~~La~~~---e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~  389 (508)
                      .+..+|-+++...   ++...|++  ++   -.+|+.  +  |+.+++-|+.+|..+.+.+
T Consensus       169 agl~~L~eia~~S~D~~i~~~I~~--eI---~elL~~--e--D~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          169 AGFCLFLNMLNSSADSGHLTLILD--EI---PSLLQN--D--NEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             HHHHHHHHHGGGCSSCCCGGGTTT--TH---HHHHTC--S--CHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHhhcccCCHHHHHHHHH--HH---HHHHcC--C--CHHHHHHHHHHHHHHHcCc
Confidence            9999999998743   44455543  34   345554  2  4699999999999988654

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=97.25  E-value=0.0034  Score=73.67  Aligned_cols=278  Identities=10%  Similarity=0.039  Sum_probs=164.5

Q ss_pred             HHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcch-hHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhh
Q 010533          175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST-ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV  253 (508)
Q Consensus       175 vp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~-~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~n  253 (508)
                      ++.|+.-+.+   .|.+++..|...|.......... ..-.....++.+++.|.  ..+.+++..|+.+|+.++..... 
T Consensus         8 l~~lL~~l~s---~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~--d~~~~vR~~A~~~L~~l~~~~~~-   81 (1230)
T 1u6g_C            8 ISNLLEKMTS---SDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE--DKNGEVQNLAVKCLGPLVSKVKE-   81 (1230)
T ss_dssp             HHHHHHHTTC---SSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHHTTSCH-
T ss_pred             HHHHHHhcCC---CCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHhCCH-
Confidence            4444444444   57888888888887665432110 00011234566777776  46899999999999998754433 


Q ss_pred             HHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHH
Q 010533          254 KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISA  333 (508)
Q Consensus       254 r~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a  333 (508)
                       ..+  ..+++.|+..|...+..++..++.+|..++..-....   .......... ...+|.|+..+.+..+..+...+
T Consensus        82 -~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~---~~~~~~~~~~-~~llp~L~~~l~~~~~~~~~~~a  154 (1230)
T 1u6g_C           82 -YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPAS---SGSALAANVC-KKITGRLTSAIAKQEDVSVQLEA  154 (1230)
T ss_dssp             -HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC--------CCTHHHHH-HHHHHHHHHHHSCCSCHHHHHHH
T ss_pred             -HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcc---cccchHHHHH-HHHHHHHHHHHcCCCchHHHHHH
Confidence             111  1356778888876666777778888887763211100   0000001111 13589999999753466788888


Q ss_pred             HHHHHHhhcC--hhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhcc
Q 010533          334 SIALKAVAVN--DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARF  411 (508)
Q Consensus       334 ~~aL~~La~~--~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~  411 (508)
                      +.+|..++..  +.....+  ...++.++..|.+    ++..++..++.+|..++......  +. ...++.++..|...
T Consensus       155 l~~l~~~~~~~~~~l~~~~--~~ll~~l~~~L~~----~~~~vR~~a~~al~~l~~~~~~~--~~-~~~l~~l~~~L~~~  225 (1230)
T 1u6g_C          155 LDIMADMLSRQGGLLVNFH--PSILTCLLPQLTS----PRLAVRKRTIIALGHLVMSCGNI--VF-VDLIEHLLSELSKN  225 (1230)
T ss_dssp             HHHHHHHHHHTCSSCTTTH--HHHHHHHGGGGGC----SSHHHHHHHHHHHHHHTTTC------C-TTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhHhHHHHHH--HHHHHHHHHHHcC----CcHHHHHHHHHHHHHHHHhcCHH--HH-HHHHHHHHHHhccC
Confidence            8888887742  1111100  1123445555543    24589999999999998643221  21 23578888888743


Q ss_pred             CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCcc
Q 010533          412 SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPE  478 (508)
Q Consensus       412 ~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e  478 (508)
                       .+..++..++.++..++...+...... -...++.+++.+..  .++.+++.+.+++..++...++
T Consensus       226 -~~~~~r~~a~~~l~~l~~~~~~~~~~~-l~~l~~~ll~~l~d--~~~~vR~~a~~~l~~l~~~~~~  288 (1230)
T 1u6g_C          226 -DSMSTTRTYIQCIAAISRQAGHRIGEY-LEKIIPLVVKFCNV--DDDELREYCIQAFESFVRRCPK  288 (1230)
T ss_dssp             -CSSCSCTTHHHHHHHHHHHSSGGGTTS-CTTHHHHHHHHHSS--CCTTTHHHHHHHHHHHHHCTTC
T ss_pred             -CchhHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHChH
Confidence             224567778888888875433311111 13567888888853  4567888888898888765443

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.21  E-value=0.0052  Score=61.17  Aligned_cols=156  Identities=17%  Similarity=0.187  Sum_probs=116.2

Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHH-hhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHH
Q 010533          315 RALVHSLHAGLSSPSLISASIALKA-VAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKS  393 (508)
Q Consensus       315 ~~Lv~lL~~~~d~~~~~~a~~aL~~-La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~  393 (508)
                      ..+++-|.+. +...+..+..-|.. +..+.++...+++.||+..|++.....    +...+..++.+|.+|....++..
T Consensus       121 ~~iiekL~~~-~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~----~gN~q~Y~L~AL~~LM~~v~Gm~  195 (339)
T 3dad_A          121 NAILEKLYSS-SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA----DHNYQSYILRALGQLMLFVDGML  195 (339)
T ss_dssp             HHHHHHHHHC-CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS----CHHHHHHHHHHHHHHTTSHHHHH
T ss_pred             HHHHHHHhcC-CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc----ChHHHHHHHHHHHHHHhcccccc
Confidence            3344555554 34456666677776 566789999999999999999999764    23899999999999999988888


Q ss_pred             HHHhC-CcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCc----------HHHHHHHHH-cCCCcHHH
Q 010533          394 AIIEN-GGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGS----------GDLAIQAML-KFPNAQQL  461 (508)
Q Consensus       394 ~Iv~~-Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~----------i~~Lv~~L~-~h~~~~~v  461 (508)
                      .|++. ..|..|..++.  +....|.+.|+..|..++..++.+...+.++=-          ...|+..|+ +...+..+
T Consensus       196 gvvs~~~fI~~lyslv~--s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~el  273 (339)
T 3dad_A          196 GVVAHSDTIQWLYTLCA--SLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPEL  273 (339)
T ss_dssp             HHHHCHHHHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHH
T ss_pred             chhCCHHHHHHHHHHHc--CccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHH
Confidence            88853 46888888888  678999999999999999877777665544311          568888885 23457888


Q ss_pred             HHHHHHHHHHhhhcCc
Q 010533          462 QRSSCFMIRNLVARNP  477 (508)
Q Consensus       462 q~~A~~aL~nL~~~~~  477 (508)
                      |.+|-..|-.+...-|
T Consensus       274 q~~amtLIN~lL~~ap  289 (339)
T 3dad_A          274 LVYTVTLINKTLAALP  289 (339)
T ss_dssp             HHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHhcCC
Confidence            8776665555544434

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.17  E-value=0.015  Score=57.92  Aligned_cols=139  Identities=8%  Similarity=0.013  Sum_probs=106.2

Q ss_pred             hHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHh-cCChH
Q 010533          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRT-GGGPK  220 (508)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~-~ggi~  220 (508)
                      +.++.+.++..|+.....  +..+...++..||+..|+.....   .+...+..+|.++..++.....-..++. ...|.
T Consensus       131 ~~~~lr~aLfsLk~~~q~--D~~Fa~EFI~~~GL~~Li~vi~~---~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~  205 (339)
T 3dad_A          131 SGPELRRSLFSLKQIFQE--DKDLVPEFVHSEGLSCLIRVGAA---ADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQ  205 (339)
T ss_dssp             CHHHHHHHHHHHHHHHHT--CTTHHHHHHHTTHHHHHHHHHTT---SCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHH
T ss_pred             CcHHHHHHHHHHHHHhhc--chHHHHHHHHhccHHHHHHHHHh---cChHHHHHHHHHHHHHHhccccccchhCCHHHHH
Confidence            678899999999995555  78888999999999999999877   4788999999999999865333334553 45677


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHc-C---------cHHHHHHHHh---cCChHHHHHHHHHHHH
Q 010533          221 LLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMEL-K---------IDELILEILS---RQRNDSIQSLYDAIRV  287 (508)
Q Consensus       221 ~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~-G---------~i~~Lv~lL~---~~~~~~~~~A~~aL~~  287 (508)
                      .+..++.  +.+..|...++..|..++..++.+...+.++ .         -...|+.+|.   +.+.+++.+|...|-.
T Consensus       206 ~lyslv~--s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~  283 (339)
T 3dad_A          206 WLYTLCA--SLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINK  283 (339)
T ss_dssp             HHHHGGG--CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHc--CccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence            7887877  4679999999999999988887776655432 1         2678999997   3444777776654443

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.13  E-value=7.1e-05  Score=64.44  Aligned_cols=119  Identities=9%  Similarity=0.032  Sum_probs=80.8

Q ss_pred             CcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHh
Q 010533          261 KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAV  340 (508)
Q Consensus       261 G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~L  340 (508)
                      ..++.|+.+|++.+..+...|+++|..+-  +                   ..++.|+.+|++ +++.+...++++|+++
T Consensus        12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~--~-------------------~~~~~L~~~L~d-~~~~vR~~A~~aL~~~   69 (131)
T 1te4_A           12 SGLVPRGSHMADENKWVRRDVSTALSRMG--D-------------------EAFEPLLESLSN-EDWRIRGAAAWIIGNF   69 (131)
T ss_dssp             ---------CCSSCCCSSSSCCSSTTSCS--S-------------------TTHHHHHHGGGC-SCHHHHHHHHHHHGGG
T ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHhC--c-------------------hHHHHHHHHHcC-CCHHHHHHHHHHHHhc
Confidence            45677777777655555555665554331  1                   236889998885 5788999999999887


Q ss_pred             hcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHH
Q 010533          341 AVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQE  420 (508)
Q Consensus       341 a~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~  420 (508)
                      ...          ..++.|+.+|.+.    +..|...++.+|..+..          ..+++.|+.+|+  .+++.|+..
T Consensus        70 ~~~----------~a~~~L~~~L~d~----~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~--d~~~~vr~~  123 (131)
T 1te4_A           70 QDE----------RAVEPLIKLLEDD----SGFVRSGAARSLEQIGG----------ERVRAAMEKLAE--TGTGFARKV  123 (131)
T ss_dssp             CSH----------HHHHHHHHHHHHC----CTHHHHHHHHHHHHHCS----------HHHHHHHHHHTT--SCCTHHHHH
T ss_pred             CCH----------HHHHHHHHHHcCC----CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHh--CCCHHHHHH
Confidence            632          2478899999763    23899999999998752          246889999997  667899999


Q ss_pred             HHHHHHH
Q 010533          421 VMSIITV  427 (508)
Q Consensus       421 a~~aL~~  427 (508)
                      |+.+|..
T Consensus       124 A~~aL~~  130 (131)
T 1te4_A          124 AVNYLET  130 (131)
T ss_dssp             HHHHGGG
T ss_pred             HHHHHHh
Confidence            9988764

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=97.07  E-value=0.014  Score=55.07  Aligned_cols=182  Identities=13%  Similarity=0.134  Sum_probs=118.5

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHhcCC-CcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc-
Q 010533          265 LILEILSRQRNDSIQSLYDAIRVLLTP-DDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-  342 (508)
Q Consensus       265 ~Lv~lL~~~~~~~~~~A~~aL~~L~~~-dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~-  342 (508)
                      .+.+.+.+.+-...+.|...|..+... .+..     ...+ .     ..++.|..+|....+..+...++.+|..|+. 
T Consensus        19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~-----~~~~-~-----~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~   87 (242)
T 2qk2_A           19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLE-----NGEY-G-----ALVSALKKVITKDSNVVLVAMAGKCLALLAKG   87 (242)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBC-----CCCC-H-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHccCCCCC-----CCCH-H-----HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence            366667655546667777777777643 1110     0011 1     2357778888522467788899999999885 


Q ss_pred             -ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHH
Q 010533          343 -NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEV  421 (508)
Q Consensus       343 -~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a  421 (508)
                       .+++...+..  .++.|+..+.+.    +..++..++.+|.+++......      ..+|.|...|.  ..++.+++.+
T Consensus        88 l~~~~~~~~~~--ilp~ll~~l~d~----~~~vr~~a~~aL~~~~~~~~~~------~ll~~l~~~l~--~~~~~vr~~~  153 (242)
T 2qk2_A           88 LAKRFSNYASA--CVPSLLEKFKEK----KPNVVTALREAIDAIYASTSLE------AQQESIVESLS--NKNPSVKSET  153 (242)
T ss_dssp             HGGGGHHHHHH--HHHHHHHGGGCC----CHHHHHHHHHHHHHHHTTSCHH------HHHHHHHHHTT--CSCHHHHHHH
T ss_pred             HhhhHHHHHHH--HHHHHHHHHcCC----CHHHHHHHHHHHHHHHHcCCHH------HHHHHHHHHHc--CCChHHHHHH
Confidence             2222222211  367777777753    3589999999999998654321      24677888887  4689999999


Q ss_pred             HHHHHHHhcCC-hhh-HHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhh
Q 010533          422 MSIITVLSLRS-PEN-AARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA  474 (508)
Q Consensus       422 ~~aL~~La~~~-~~~-~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~  474 (508)
                      +..|..+.... |+. -...+. ..++.|+.+|..  .++.|+..|..+|..++.
T Consensus       154 l~~l~~~l~~~~~~~~~~~~l~-~l~p~l~~~l~D--~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          154 ALFIARALTRTQPTALNKKLLK-LLTTSLVKTLNE--PDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             HHHHHHHHTTCCGGGCCHHHHH-HHHHHHHHHHTS--SCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCccHHHHH-HHHHHHHHHhcC--CChHHHHHHHHHHHHHHH
Confidence            99999965443 431 122222 467888888843  568899999999988874

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.05  E-value=7.4e-05  Score=64.31  Aligned_cols=119  Identities=8%  Similarity=0.039  Sum_probs=81.7

Q ss_pred             CCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchh
Q 010533          312 GIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSN  391 (508)
Q Consensus       312 g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~  391 (508)
                      ..++.|+.+|++ .++.+...++++|..+..           ..++.|+.+|.+.    ++.++..++.+|+++..    
T Consensus        12 ~~~~~l~~~L~~-~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~----~~~vR~~A~~aL~~~~~----   71 (131)
T 1te4_A           12 SGLVPRGSHMAD-ENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNE----DWRIRGAAAWIIGNFQD----   71 (131)
T ss_dssp             ---------CCS-SCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCS----CHHHHHHHHHHHGGGCS----
T ss_pred             ccHHHHHHHhcC-CCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCC----CHHHHHHHHHHHHhcCC----
Confidence            567888888875 355566666666655432           1368888888752    45899999999998753    


Q ss_pred             HHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 010533          392 KSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRN  471 (508)
Q Consensus       392 k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~n  471 (508)
                            ...++.|+.+|.  .+++.|+..++++|..+.  ++         ..++.|+++++  ..++.|+..|+++|..
T Consensus        72 ------~~a~~~L~~~L~--d~~~~VR~~A~~aL~~~~--~~---------~a~~~L~~~l~--d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           72 ------ERAVEPLIKLLE--DDSGFVRSGAARSLEQIG--GE---------RVRAAMEKLAE--TGTGFARKVAVNYLET  130 (131)
T ss_dssp             ------HHHHHHHHHHHH--HCCTHHHHHHHHHHHHHC--SH---------HHHHHHHHHTT--SCCTHHHHHHHHHGGG
T ss_pred             ------HHHHHHHHHHHc--CCCHHHHHHHHHHHHHhC--cH---------HHHHHHHHHHh--CCCHHHHHHHHHHHHh
Confidence                  135899999997  568899999999999986  22         25678888885  2567899999998864

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=96.78  E-value=0.011  Score=55.79  Aligned_cols=180  Identities=10%  Similarity=0.139  Sum_probs=116.6

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhh-HHHHHHcCcHHHHHHHHh-cCChHHHHHHHHHHHHhcCCCcchhhh
Q 010533          221 LLVNILIDGNEDPEILNSGFAVVAASATGNEVV-KESYMELKIDELILEILS-RQRNDSIQSLYDAIRVLLTPDDDQVVA  298 (508)
Q Consensus       221 ~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~n-r~~i~~~G~i~~Lv~lL~-~~~~~~~~~A~~aL~~L~~~dd~r~~~  298 (508)
                      .+.+.+.  +.+-..+..++..|..++..++.. ...+  ...++.|...|. ..+..+...|+.+|..|+..      +
T Consensus        19 ~l~~~l~--s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~------l   88 (242)
T 2qk2_A           19 DFYDKLE--EKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKG------L   88 (242)
T ss_dssp             THHHHHT--CSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH------H
T ss_pred             HHHhhhc--cCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH------H
Confidence            3556664  456777788888887776542211 0001  134667778884 55557888899999988831      1


Q ss_pred             hhcc-hHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHH
Q 010533          299 SQVY-GYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARI  377 (508)
Q Consensus       299 ~~a~-~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~  377 (508)
                      +..+ .|...     .++.|+..+.+. +..+...++.+|..+...... ..     .++.|...|.+    .++.+...
T Consensus        89 ~~~~~~~~~~-----ilp~ll~~l~d~-~~~vr~~a~~aL~~~~~~~~~-~~-----ll~~l~~~l~~----~~~~vr~~  152 (242)
T 2qk2_A           89 AKRFSNYASA-----CVPSLLEKFKEK-KPNVVTALREAIDAIYASTSL-EA-----QQESIVESLSN----KNPSVKSE  152 (242)
T ss_dssp             GGGGHHHHHH-----HHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTSCH-HH-----HHHHHHHHTTC----SCHHHHHH
T ss_pred             hhhHHHHHHH-----HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHcCCH-HH-----HHHHHHHHHcC----CChHHHHH
Confidence            1111 22332     478999988864 567888899999888754221 11     23445555543    35689999


Q ss_pred             HHHHHHHhh-CC-ch--hHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010533          378 CCSLLSKLA-GS-DS--NKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL  430 (508)
Q Consensus       378 al~aL~~La-~~-~~--~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~  430 (508)
                      ++..|..+. .. ++  ....+-  ..+|.|+.+|.  ..++.|+..|..+|..|+.
T Consensus       153 ~l~~l~~~l~~~~~~~~~~~~l~--~l~p~l~~~l~--D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          153 TALFIARALTRTQPTALNKKLLK--LLTTSLVKTLN--EPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             HHHHHHHHHTTCCGGGCCHHHHH--HHHHHHHHHHT--SSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCccHHHHH--HHHHHHHHHhc--CCChHHHHHHHHHHHHHHH
Confidence            999999964 32 22  233332  46789999997  6689999999999999884

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=96.55  E-value=0.4  Score=54.23  Aligned_cols=207  Identities=11%  Similarity=0.083  Sum_probs=124.5

Q ss_pred             HHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhH
Q 010533          175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVK  254 (508)
Q Consensus       175 vp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr  254 (508)
                      +..|+..+...  .+..+...+...|+.+.-+.        ...++.+++.|.. ..++-++..++.+++-.+.+.-++ 
T Consensus       509 i~~LL~~~~e~--~~e~vrR~aalgLGll~~g~--------~e~~~~li~~L~~-~~dp~vRygaa~alglAyaGTGn~-  576 (963)
T 4ady_A          509 IHDMFTYSQET--QHGNITRGLAVGLALINYGR--------QELADDLITKMLA-SDESLLRYGGAFTIALAYAGTGNN-  576 (963)
T ss_dssp             HHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTC--------GGGGHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTSCCH-
T ss_pred             HHHHHHHHhcc--CcHHHHHHHHHHHHhhhCCC--------hHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHhcCCCCH-
Confidence            45555555432  24455555555555443332        2467888888875 357778777777776554433322 


Q ss_pred             HHHHHcCcHHHHHHHHhcC-ChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHH
Q 010533          255 ESYMELKIDELILEILSRQ-RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISA  333 (508)
Q Consensus       255 ~~i~~~G~i~~Lv~lL~~~-~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a  333 (508)
                            .+|..|++.+.++ ++.+++.|..+|..+...+.                  ..++.++.+|....++.+...+
T Consensus       577 ------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~------------------e~v~rlv~~L~~~~d~~VR~gA  632 (963)
T 4ady_A          577 ------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY------------------TTVPRIVQLLSKSHNAHVRCGT  632 (963)
T ss_dssp             ------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC------------------SSHHHHTTTGGGCSCHHHHHHH
T ss_pred             ------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH------------------HHHHHHHHHHHhcCCHHHHHHH
Confidence                  1356677777655 34777888888876655432                  3467777777766688899999


Q ss_pred             HHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCchh-HHHHHhCCcHHHHHHHHhcc
Q 010533          334 SIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSN-KSAIIENGGMDKLIVVSARF  411 (508)
Q Consensus       334 ~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~-k~~Iv~~Ggl~~Lv~lL~~~  411 (508)
                      +.+|+.++..+.+..      .++.|..++.+.    +..|...|+.+|+.+. ++.+. ...+.  +.+..|.......
T Consensus       633 alALGli~aGn~~~~------aid~L~~L~~D~----d~~Vrq~Ai~ALG~Ig~gtnna~~~rva--~~l~~L~~~~~dk  700 (963)
T 4ady_A          633 AFALGIACAGKGLQS------AIDVLDPLTKDP----VDFVRQAAMIALSMILIQQTEKLNPQVA--DINKNFLSVITNK  700 (963)
T ss_dssp             HHHHHHHTSSSCCHH------HHHHHHHHHTCS----SHHHHHHHHHHHHHHSTTCCTTTCTTHH--HHHHHHHHHHHCS
T ss_pred             HHHHHHhccCCCcHH------HHHHHHHHccCC----CHHHHHHHHHHHHHHhcCCccccchHHH--HHHHHHHHHHhcc
Confidence            999999876433222      245566665542    3489999999999984 43322 01111  1233455555421


Q ss_pred             CCCHHHHHHHHHHHHHHh
Q 010533          412 SDDASVLQEVMSIITVLS  429 (508)
Q Consensus       412 ~~~~~v~e~a~~aL~~La  429 (508)
                      ..++..+-.+.-+..-+.
T Consensus       701 ~~d~~~~fga~iAqGll~  718 (963)
T 4ady_A          701 HQEGLAKFGACVAQGIMN  718 (963)
T ss_dssp             SSCHHHHHHHHHHHHHHT
T ss_pred             cccHHHHHHHHHHHHHHh
Confidence            235666666666666554

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=96.44  E-value=0.035  Score=52.38  Aligned_cols=182  Identities=12%  Similarity=0.101  Sum_probs=124.7

Q ss_pred             ChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCC-hhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchh
Q 010533          218 GPKLLVNILIDGNEDPEILNSGFAVVAASATGN-EVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQV  296 (508)
Q Consensus       218 gi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~-e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~  296 (508)
                      .+..|..+|.  ..|..++..++.+|.++-..- ..-+..+++ ..++.+++++++.++.+.-.|..+|..|..+-....
T Consensus        34 ~l~~L~~LL~--dkD~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~  110 (265)
T 3b2a_A           34 ALFLILELAG--EDDETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS  110 (265)
T ss_dssp             HHHHHHHHTT--SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred             HHHHHHHHHh--ccchHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH
Confidence            3455666663  458899999999999886543 233334443 578999999988777777788899998886543211


Q ss_pred             hhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHH
Q 010533          297 VASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVAR  376 (508)
Q Consensus       297 ~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~  376 (508)
                               ..+.  ..+.+|.++++++ +.-....++-.|+.|-..... .     +.+..+.+++. +.   +..++.
T Consensus       111 ---------~~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~-~-----~V~~~l~sLl~-Sk---d~~vK~  168 (265)
T 3b2a_A          111 ---------KTFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDS-K-----LVRTYINELVV-SP---DLYTKV  168 (265)
T ss_dssp             ---------HHHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCC-H-----HHHHHHHHHHT-CS---SHHHHH
T ss_pred             ---------HHHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccch-H-----HHHHHHHHHHh-CC---ChhHHH
Confidence                     1222  2467888888854 555678888888888443222 1     23467888883 32   459999


Q ss_pred             HHHHHHHHhhCC---chhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcC
Q 010533          377 ICCSLLSKLAGS---DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLR  431 (508)
Q Consensus       377 ~al~aL~~La~~---~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~  431 (508)
                      .++.+|.++++.   +++-.-|.     .-+-.+|+  +.++.+++-|..+|-.+..+
T Consensus       169 agl~~L~eia~~S~D~~i~~~I~-----~eI~elL~--~eD~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          169 AGFCLFLNMLNSSADSGHLTLIL-----DEIPSLLQ--NDNEFIVELALDVLEKALSF  219 (265)
T ss_dssp             HHHHHHHHHGGGCSSCCCGGGTT-----TTHHHHHT--CSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHhhcccCCHHHHHHHH-----HHHHHHHc--CCCHHHHHHHHHHHHHHHcC
Confidence            999999999853   23333333     33445677  67999999999999999753

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=96.33  E-value=0.33  Score=44.14  Aligned_cols=214  Identities=13%  Similarity=0.165  Sum_probs=137.2

Q ss_pred             cCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCcc
Q 010533          216 GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDD  294 (508)
Q Consensus       216 ~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~~L~~~dd~  294 (508)
                      ...+..++++|+.  +-=.|+..++.++..++...++--..+     +..|+-+++.... ..-++.+.++..++.-.  
T Consensus        31 ~~~l~~lI~~LDD--DlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~--  101 (253)
T 2db0_A           31 ESVLKKLIELLDD--DLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK--  101 (253)
T ss_dssp             HHHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHhcc--HHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhC--
Confidence            3445666777752  223588899999999876666554443     3456666665433 55566777787776321  


Q ss_pred             hhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHH
Q 010533          295 QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKT  373 (508)
Q Consensus       295 r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~  373 (508)
                       +          .++. +.+|.|..=.+-+ |+.+..++..+|..++. +++....|+     .-+..++.+ ++.   .
T Consensus       102 -P----------e~v~-~vVp~lfanyrig-d~kikIn~~yaLeeIaranP~l~~~v~-----rdi~smlts-kd~---~  159 (253)
T 2db0_A          102 -P----------ELVK-SMIPVLFANYRIG-DEKTKINVSYALEEIAKANPMLMASIV-----RDFMSMLSS-KNR---E  159 (253)
T ss_dssp             -H----------HHHH-HHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCHHHHHHHH-----HHHHHHTSC-SSH---H
T ss_pred             -H----------HHHH-hhHHHHHHHHhcC-CccceecHHHHHHHHHHhChHHHHHHH-----HHHHHHhcC-CCh---H
Confidence             1          1222 4567776666665 78889999999999998 777766555     446667764 232   2


Q ss_pred             HHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHH
Q 010533          374 VARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAML  453 (508)
Q Consensus       374 v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~  453 (508)
                      =.-.++..|..+.   +|.-.-+ .-.+|.|..+|.  .++.-|+..++-+|.+|+.-+|..+..+.      ..++-|.
T Consensus       160 Dkl~aLnFi~alG---en~~~yv-~PfLprL~aLL~--D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~  227 (253)
T 2db0_A          160 DKLTALNFIEAMG---ENSFKYV-NPFLPRIINLLH--DGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELN  227 (253)
T ss_dssp             HHHHHHHHHHTCC---TTTHHHH-GGGHHHHHGGGG--CSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCC
T ss_pred             HHHHHHHHHHHHh---ccCcccc-CcchHHHHHHHc--CcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhc
Confidence            2234444444443   2222222 257899999998  77899999999999999999998666543      2333343


Q ss_pred             cCCCcHHHHHHHHHHHHHhhh
Q 010533          454 KFPNAQQLQRSSCFMIRNLVA  474 (508)
Q Consensus       454 ~h~~~~~vq~~A~~aL~nL~~  474 (508)
                      .  .+..|++..-.+|..++.
T Consensus       228 D--~S~lv~~~V~egL~rl~l  246 (253)
T 2db0_A          228 D--TSSLVNKTVKEGISRLLL  246 (253)
T ss_dssp             C--SCHHHHHHHHHHHHHHHH
T ss_pred             C--cHHHHHHHHHHHHHHHHH
Confidence            2  345677777777776654

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=96.24  E-value=0.17  Score=48.26  Aligned_cols=200  Identities=9%  Similarity=0.062  Sum_probs=118.4

Q ss_pred             HHHHhcCChHHHHHHHHHHHH-hcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc--C
Q 010533          267 LEILSRQRNDSIQSLYDAIRV-LLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV--N  343 (508)
Q Consensus       267 v~lL~~~~~~~~~~A~~aL~~-L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~--~  343 (508)
                      .+.|.+.+-...++|...|.. ++.+. .+... ...++.      ..+..|...|....+..+...+|.+|+.|+.  .
T Consensus        22 ~~~l~s~~w~eRk~al~~L~~~~~~~~-~~i~~-~~~~~~------~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~   93 (249)
T 2qk1_A           22 QERITSSKWKDRVEALEEFWDSVLSQT-KKLKS-TSQNYS------NLLGIYGHIIQKDANIQAVALAAQSVELICDKLK   93 (249)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHTGGGC-CCBCC-TTCCCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHhhcCCHHHHHHHHHHHHHHHHhcC-Ccccc-CcccHH------HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence            445555444556677777887 76321 11100 000000      2366777778444466778899999999884  2


Q ss_pred             -hhhH-hHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC-chhHHHHHhCCcHHHHHHHHhccCCCHHHHHH
Q 010533          344 -DEIC-KSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGS-DSNKSAIIENGGMDKLIVVSARFSDDASVLQE  420 (508)
Q Consensus       344 -~e~~-~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~-~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~  420 (508)
                       +++. .....  .++.|++.+.+.    .+.|++.+..+|..++.+ +.....-.=...++.|+..|.  +.++.+++.
T Consensus        94 ~~~f~~~y~~~--llp~ll~~l~dk----k~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~--~k~~~vk~~  165 (249)
T 2qk1_A           94 TPGFSKDYVSL--VFTPLLDRTKEK----KPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMK--HKTPQIRME  165 (249)
T ss_dssp             TTTSCHHHHHH--HHHHHHHGGGCC----CHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTT--CSSHHHHHH
T ss_pred             cccccHHHHHH--HHHHHHHHHcCC----CHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHc--CCChHHHHH
Confidence             2222 22221  356667666642    347889999999888642 111000000024667888887  558999999


Q ss_pred             HHHHHHHHhcCChh---hHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhh--cCccchHHHHh
Q 010533          421 VMSIITVLSLRSPE---NAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA--RNPENSFCSVM  485 (508)
Q Consensus       421 a~~aL~~La~~~~~---~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~--~~~e~~~~~~~  485 (508)
                      ++.+|..++...+.   .-...+....++.+.++|.  ..++.|+..|..++.-++.  ++... ..++.
T Consensus       166 al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~--D~~~~VR~aA~~~l~~i~~~vG~~~~-~p~l~  232 (249)
T 2qk1_A          166 CTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVN--DTQPAIRTIGFESFAILIKIFGMNTF-VKTLE  232 (249)
T ss_dssp             HHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHHCSGGG-HHHHH
T ss_pred             HHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHhCHHHH-HHHHH
Confidence            99999999865442   2222232467899999994  3568898888888877763  44434 34443

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.83  E-value=1.6  Score=49.61  Aligned_cols=284  Identities=11%  Similarity=0.073  Sum_probs=167.4

Q ss_pred             hHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcc--hhHHHhcCCh
Q 010533          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS--TETFRTGGGP  219 (508)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~--~~~i~~~ggi  219 (508)
                      +.++...+...+..+...  +...  .....+.+..|...+....  +.   ..|+.++..++.....  ..+-.--+-+
T Consensus        27 ~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~k~--~~---~~a~~~~~~~~~~~~~~~~~e~~~~~~~   97 (986)
T 2iw3_A           27 TADNRHEIASEVASFLNG--NIIE--HDVPEHFFGELAKGIKDKK--TA---ANAMQAVAHIANQSNLSPSVEPYIVQLV   97 (986)
T ss_dssp             CTTTHHHHHHHHHHHHTS--SCSS--SSCCHHHHHHHHHHHTSHH--HH---HHHHHHHHHHTCTTTCCTTTHHHHHTTH
T ss_pred             chhHHHHHHHHHHHHHhc--cccc--cccchhHHHHHHHHHhccC--CH---HHHHHHHHHHHHhcCCCCCcccchHHHH
Confidence            345667777788887664  1111  0111256677777765431  22   5667777777643211  1111111356


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhhc-CChhhHHHHHHcCcHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCcchhh
Q 010533          220 KLLVNILIDGNEDPEILNSGFAVVAASAT-GNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVV  297 (508)
Q Consensus       220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~-~~e~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~~L~~~dd~r~~  297 (508)
                      +.+++.+.  .....|+..|-.++..+.. .++..-     ...+|.|+..|.+... .....|..+|..|+..-  .  
T Consensus        98 ~~~~~~~~--dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~--  166 (986)
T 2iw3_A           98 PAICTNAG--NKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--K--  166 (986)
T ss_dssp             HHHHHHTT--CSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--H--
T ss_pred             HHHHHHhc--CCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--H--
Confidence            66666654  2346677666655555443 233222     3458999999977654 55666777777776321  0  


Q ss_pred             hhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc---ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHH
Q 010533          298 ASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV---NDEICKSVAENGGIDALLRCIDDSGLQGNKTV  374 (508)
Q Consensus       298 ~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~---~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v  374 (508)
                          ..-...+-  ..||.+-+.|.+. .+++...+..++-.++.   |.+.-      .-||.|+++|.+. +    + 
T Consensus       167 ----~~~~~~~~--~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~n~d~~------~~~~~~~~~~~~p-~----~-  227 (986)
T 2iw3_A          167 ----DQVALRMP--ELIPVLSETMWDT-KKEVKAAATAAMTKATETVDNKDIE------RFIPSLIQCIADP-T----E-  227 (986)
T ss_dssp             ----HHHHHHHH--HHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCCCTTTG------GGHHHHHHHHHCT-T----H-
T ss_pred             ----HHHHHhcc--chhcchHhhcccC-cHHHHHHHHHHHHHHHhcCCCcchh------hhHHHHHHHhcCh-h----h-
Confidence                01112222  4678888888764 36777777777766554   33332      2368999999874 2    2 


Q ss_pred             HHHHHHHHHHhhC---CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhc--CChhhHHHHHhcCcHHHHH
Q 010533          375 ARICCSLLSKLAG---SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL--RSPENAARAMEAGSGDLAI  449 (508)
Q Consensus       375 ~~~al~aL~~La~---~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~--~~~~~~~~i~~~G~i~~Lv  449 (508)
                      +-+|+..|+.-.-   -++-.-+++    +|.|.+-|+  .....+++.++-++-|||.  ++|.-...++- ...|-+-
T Consensus       228 ~~~~~~~l~~~tfv~~v~~~~l~~~----~p~l~r~l~--~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~  300 (986)
T 2iw3_A          228 VPETVHLLGATTFVAEVTPATLSIM----VPLLSRGLN--ERETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLK  300 (986)
T ss_dssp             HHHHHHHHTTCCCCSCCCHHHHHHH----HHHHHHHHT--SSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHH
T ss_pred             hHHHHHHhhcCeeEeeecchhHHHH----HHHHHhhhc--cCcchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHH
Confidence            3445555544332   222233332    688888887  5578899999999999994  66766666653 3566666


Q ss_pred             HHHHcCCCcHHHHHHHHHHHHHh
Q 010533          450 QAMLKFPNAQQLQRSSCFMIRNL  472 (508)
Q Consensus       450 ~~L~~h~~~~~vq~~A~~aL~nL  472 (508)
                      +..... .+|+++..|-.|+.-|
T Consensus       301 ~~~~~~-~~pe~r~~~~~a~~~l  322 (986)
T 2iw3_A          301 SNFATI-ADPEAREVTLRALKTL  322 (986)
T ss_dssp             HHTTTC-CSHHHHHHHHHHHHHH
T ss_pred             HHhhcc-CCHHHHHHHHHHHHHH
Confidence            666554 5788888887777776

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=95.51  E-value=0.15  Score=51.49  Aligned_cols=215  Identities=7%  Similarity=0.054  Sum_probs=115.3

Q ss_pred             cHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhh
Q 010533          174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV  253 (508)
Q Consensus       174 avp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~n  253 (508)
                      ++..|.+=|.+   +++-+...|+.+|+.+....     ++ ....+.+.+.|.  ..++-|...|+-+...+...+++ 
T Consensus       105 v~Nsl~kDl~~---~N~~iR~lALRtL~~I~~~~-----m~-~~l~~~lk~~L~--d~~pyVRk~A~l~~~kL~~~~pe-  172 (355)
T 3tjz_B          105 VTSSLTKDMTG---KEDSYRGPAVRALCQITDST-----ML-QAIERYMKQAIV--DKVPSVSSSALVSSLHLLKCSFD-  172 (355)
T ss_dssp             GHHHHHHHHHS---SCHHHHHHHHHHHHHHCCTT-----TH-HHHHHHHHHHHT--CSSHHHHHHHHHHHHHHTTTCHH-
T ss_pred             HHHHHHhhcCC---CcHhHHHHHHHHHhcCCCHH-----HH-HHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhccCHH-
Confidence            35555555555   46778888999999887643     11 112233444444  45899999999999988766654 


Q ss_pred             HHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCC--ChhHHH
Q 010533          254 KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL--SSPSLI  331 (508)
Q Consensus       254 r~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~--d~~~~~  331 (508)
                         +++ +.+..+-+++...+..++-+|..+|..+...|.  .                ++..|+.-+..+.  ++-.+.
T Consensus       173 ---~v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~--~----------------a~~kLv~~l~~~~l~~~~~q~  230 (355)
T 3tjz_B          173 ---VVK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR--L----------------AVSKMISKFTRHGLKSPFAYC  230 (355)
T ss_dssp             ---HHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH--H----------------HHHHHHHHHHSSCCSCHHHHH
T ss_pred             ---HHH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch--H----------------HHHHHHHHHhcCCCcChHHHH
Confidence               233 688889899987776788888888888875441  0                2344455555432  343333


Q ss_pred             HHHHHHHHhhcCh--hhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHh
Q 010533          332 SASIALKAVAVND--EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSA  409 (508)
Q Consensus       332 ~a~~aL~~La~~~--e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~  409 (508)
                      .....+..+...+  +....     -++.|...|+    +.+..|+=+|+.+|-.|...+.   .+. .-++..|..+|.
T Consensus       231 ~llr~l~~~~~~d~~~~~~~-----~~~~l~~~L~----~~~~aVvyEa~k~I~~l~~~~~---~~~-~~a~~~L~~fLs  297 (355)
T 3tjz_B          231 MMIRVASRQLEDEDGSRDSP-----LFDFIESCLR----NKHEMVVYEAASAIVNLPGCSA---KEL-APAVSVLQLFCS  297 (355)
T ss_dssp             HHHHHHTCC----------------------CCCC----CSSHHHHHHHHHHHTC---------------CCCTHHHHHH
T ss_pred             HHHHHHHHhccccchhhHHH-----HHHHHHHHHc----CCChHHHHHHHHHHHhccCCCH---HHH-HHHHHHHHHHHc
Confidence            3333333333322  11111     2233444444    3345788899999888754221   121 244667777787


Q ss_pred             ccCCCHHHHHHHHHHHHHHhcCChhhHH
Q 010533          410 RFSDDASVLQEVMSIITVLSLRSPENAA  437 (508)
Q Consensus       410 ~~~~~~~v~e~a~~aL~~La~~~~~~~~  437 (508)
                        ++++.++--|+..|..+...+|+..+
T Consensus       298 --s~d~niryvaLr~L~~l~~~~P~~v~  323 (355)
T 3tjz_B          298 --SPKAALRYAAVRTLNKVAMKHPSAVT  323 (355)
T ss_dssp             --SSSSSSHHHHHHCC------------
T ss_pred             --CCCchHHHHHHHHHHHHHHHCcHHHH
Confidence              67788999999999999988876543

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=95.41  E-value=0.29  Score=46.60  Aligned_cols=181  Identities=7%  Similarity=0.074  Sum_probs=109.3

Q ss_pred             CCCHHHHHHHHHHHHH-hhcCChhhHHHHHH-cCcHHHHHHHHh-cCChHHHHHHHHHHHHhcCCCcch-hhhhhcc-hH
Q 010533          230 NEDPEILNSGFAVVAA-SATGNEVVKESYME-LKIDELILEILS-RQRNDSIQSLYDAIRVLLTPDDDQ-VVASQVY-GY  304 (508)
Q Consensus       230 ~~~~~v~~~a~~~L~~-l~~~~e~nr~~i~~-~G~i~~Lv~lL~-~~~~~~~~~A~~aL~~L~~~dd~r-~~~~~a~-~~  304 (508)
                      +.+-..+..++..|.. ++.+++.....-.+ ...+..|...|. ..+..++..||.+|..|+.+  -+ ..|   . .|
T Consensus        27 s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~--l~~~~f---~~~y  101 (249)
T 2qk1_A           27 SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDK--LKTPGF---SKDY  101 (249)
T ss_dssp             CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH--HCTTTS---CHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh--cccccc---cHHH
Confidence            3466677778888887 75432211100001 124667777884 44446778899999998831  11 111   1 24


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcC-hhhHhH--HhhcCCHHHHHHHHhccCCCCcHHHHHHHHHH
Q 010533          305 ARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DEICKS--VAENGGIDALLRCIDDSGLQGNKTVARICCSL  381 (508)
Q Consensus       305 ~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~-~e~~~~--i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~a  381 (508)
                      ...     .++.+++.+++. .+.++..+..+|-.++.. +.....  +-  ..++.|+..|.+    .++.+...++.+
T Consensus       102 ~~~-----llp~ll~~l~dk-k~~V~~aa~~al~~i~~~~~~~~~~~~l~--~ll~~l~~~l~~----k~~~vk~~al~~  169 (249)
T 2qk1_A          102 VSL-----VFTPLLDRTKEK-KPSVIEAIRKALLTICKYYDPLASSGRNE--DMLKDILEHMKH----KTPQIRMECTQL  169 (249)
T ss_dssp             HHH-----HHHHHHHGGGCC-CHHHHHHHHHHHHHHHHHSCTTCTTCTTH--HHHHHHHHHTTC----SSHHHHHHHHHH
T ss_pred             HHH-----HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHccccccCCcHH--HHHHHHHHHHcC----CChHHHHHHHHH
Confidence            443     378999988764 366777777777666642 111000  00  123455555543    356899999999


Q ss_pred             HHHhhC-Cchh-HH--HHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010533          382 LSKLAG-SDSN-KS--AIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS  429 (508)
Q Consensus       382 L~~La~-~~~~-k~--~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La  429 (508)
                      |..++. .... ..  ..+....+|.|..+|.  ..++.|++.|..+|..++
T Consensus       170 l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~--D~~~~VR~aA~~~l~~i~  219 (249)
T 2qk1_A          170 FNASMKEEKDGYSTLQRYLKDEVVPIVIQIVN--DTQPAIRTIGFESFAILI  219 (249)
T ss_dssp             HHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHT--CSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCcchhHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHH
Confidence            999873 2221 11  1222367899999997  668999999999999987

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=95.31  E-value=0.99  Score=41.09  Aligned_cols=188  Identities=13%  Similarity=0.127  Sum_probs=124.5

Q ss_pred             cHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhh
Q 010533          262 IDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA  341 (508)
Q Consensus       262 ~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La  341 (508)
                      .+..+++.|...-=-++.||...+..++..-.            ..+ + -.+..|+-+++....-.+-...+.+++.++
T Consensus        33 ~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~------------el~-e-pl~~kL~vm~~ksEaIpltqeIa~a~G~la   98 (253)
T 2db0_A           33 VLKKLIELLDDDLWTVVKNAISIIMVIAKTRE------------DLY-E-PMLKKLFSLLKKSEAIPLTQEIAKAFGQMA   98 (253)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCG------------GGH-H-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHhHHHHHHHHHHHhH------------HHH-H-HHHHHHHHHHhhcccCchHHHHHHHHhHHH
Confidence            55667777754322688999988888764221            011 1 235566666666433335567888888888


Q ss_pred             c-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhccCCCHHHHH
Q 010533          342 V-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQ  419 (508)
Q Consensus       342 ~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e  419 (508)
                      . +++....+     ||.|..-.+-    +++.+.-+...+|..++- +|+.-..|     +.-+..++.  +.+..=+-
T Consensus        99 ~i~Pe~v~~v-----Vp~lfanyri----gd~kikIn~~yaLeeIaranP~l~~~v-----~rdi~smlt--skd~~Dkl  162 (253)
T 2db0_A           99 KEKPELVKSM-----IPVLFANYRI----GDEKTKINVSYALEEIAKANPMLMASI-----VRDFMSMLS--SKNREDKL  162 (253)
T ss_dssp             HHCHHHHHHH-----HHHHHHHSCC----CSHHHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHTS--CSSHHHHH
T ss_pred             HhCHHHHHhh-----HHHHHHHHhc----CCccceecHHHHHHHHHHhChHHHHHH-----HHHHHHHhc--CCChHHHH
Confidence            6 77765544     3555444433    345788888889998874 66554433     456777887  66666666


Q ss_pred             HHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHhc
Q 010533          420 EVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMV  486 (508)
Q Consensus       420 ~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~  486 (508)
                      .|+..|..|..+++...     .-..|.|..+|  |.++..|+..|..+|.|++.-||..|+.+.+.
T Consensus       163 ~aLnFi~alGen~~~yv-----~PfLprL~aLL--~D~deiVRaSaVEtL~~lA~~npklRkii~~k  222 (253)
T 2db0_A          163 TALNFIEAMGENSFKYV-----NPFLPRIINLL--HDGDEIVRASAVEALVHLATLNDKLRKVVIKR  222 (253)
T ss_dssp             HHHHHHHTCCTTTHHHH-----GGGHHHHHGGG--GCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCcccc-----CcchHHHHHHH--cCcchhhhHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            77777777765544432     23567888888  55778888889999999999999988877653

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=94.75  E-value=7.4  Score=44.30  Aligned_cols=258  Identities=11%  Similarity=0.089  Sum_probs=147.8

Q ss_pred             HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCC-CChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHH
Q 010533          122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGN-EGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTM  200 (508)
Q Consensus       122 ~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~-~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aL  200 (508)
                      ..++.|+..+.+.        .+. ..|+..+..+|... ..+..--.+.  +.+|.++..+..   +...+...|-.++
T Consensus        54 ~~~~~~~~~~~~k--------~~~-~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~d---k~~~v~~aa~~~~  119 (986)
T 2iw3_A           54 HFFGELAKGIKDK--------KTA-ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGN---KDKEIQSVASETL  119 (986)
T ss_dssp             HHHHHHHHHHTSH--------HHH-HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTC---SSHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhcc--------CCH-HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcC---CchHHHHHHHHHH
Confidence            4567777776653        222 78888999999652 1122222333  567777777654   3556665555555


Q ss_pred             HHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHc--CcHHHHHHHHhcCChHHH
Q 010533          201 ALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMEL--KIDELILEILSRQRNDSI  278 (508)
Q Consensus       201 a~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~--G~i~~Lv~lL~~~~~~~~  278 (508)
                      .++...-+. ..+  ...+|.|++.|... ..=.....++.++..++...   .+.+...  ..||.+.+.|-....++.
T Consensus       120 ~~~~~~~~~-~a~--~~~~~~~~~~~~~~-~kw~~k~~~l~~~~~~~~~~---~~~~~~~~~~~~p~~~~~~~d~k~~v~  192 (986)
T 2iw3_A          120 ISIVNAVNP-VAI--KALLPHLTNAIVET-NKWQEKIAILAAFSAMVDAA---KDQVALRMPELIPVLSETMWDTKKEVK  192 (986)
T ss_dssp             HHHHHHSCG-GGH--HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred             HHHHHhCCH-HHH--HHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHh---HHHHHHhccchhcchHhhcccCcHHHH
Confidence            544432211 122  45578888888642 33457778889998886433   3333321  477777777766666888


Q ss_pred             HHHHHHHHHhcC---CCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhh---HhHHhh
Q 010533          279 QSLYDAIRVLLT---PDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEI---CKSVAE  352 (508)
Q Consensus       279 ~~A~~aL~~L~~---~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~---~~~i~e  352 (508)
                      ..|..++..+|.   ++|..                .-||.|++.|.+-   +-+..+...|+.-..-.+.   --.+  
T Consensus       193 ~~~~~~~~~~~~~~~n~d~~----------------~~~~~~~~~~~~p---~~~~~~~~~l~~~tfv~~v~~~~l~~--  251 (986)
T 2iw3_A          193 AAATAAMTKATETVDNKDIE----------------RFIPSLIQCIADP---TEVPETVHLLGATTFVAEVTPATLSI--  251 (986)
T ss_dssp             HHHHHHHHHHGGGCCCTTTG----------------GGHHHHHHHHHCT---THHHHHHHHHTTCCCCSCCCHHHHHH--
T ss_pred             HHHHHHHHHHHhcCCCcchh----------------hhHHHHHHHhcCh---hhhHHHHHHhhcCeeEeeecchhHHH--
Confidence            888888877763   33321                4589999988753   2233333334332221111   1111  


Q ss_pred             cCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHh--CCcHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 010533          353 NGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIE--NGGMDKLIVVSARFSDDASVLQEVMSIITVL  428 (508)
Q Consensus       353 ~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~--~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~L  428 (508)
                        -+|.|.+-|..    ....+.+.++-++.|++.--++...+..  ---+|-|-..... .++|++++-+-.++..|
T Consensus       252 --~~p~l~r~l~~----~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~-~~~pe~r~~~~~a~~~l  322 (986)
T 2iw3_A          252 --MVPLLSRGLNE----RETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFAT-IADPEAREVTLRALKTL  322 (986)
T ss_dssp             --HHHHHHHHHTS----SSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTT-CCSHHHHHHHHHHHHHH
T ss_pred             --HHHHHHhhhcc----CcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhc-cCCHHHHHHHHHHHHHH
Confidence              13555555653    2347889999999999853222222211  1233444444443 35799998888888777

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=94.19  E-value=0.76  Score=45.73  Aligned_cols=137  Identities=14%  Similarity=0.181  Sum_probs=99.0

Q ss_pred             HHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhc
Q 010533          331 ISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSAR  410 (508)
Q Consensus       331 ~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~  410 (508)
                      ..+...|.-|..+.....-++.+.||..+...+.-.    +.++.+..|.+|-..+........= -...+|.+++.+..
T Consensus       261 tR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYp----N~~l~RaG~KLLLQVSDaksL~~t~-L~e~LPFi~~~i~~  335 (619)
T 3c2g_A          261 IRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYP----NNDLIRAGCKLLLQVSDAKALAKTP-LENILPFLLRLIEI  335 (619)
T ss_dssp             HHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSS----CHHHHHHHHHHHHHHTTCGGGGTSC-CTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccccceeecccceeEEEEeecC----CcHHHHhhhheeeeecchHHHhhcc-ccccchHHHHHhcc
Confidence            334444444444555567899999999998887642    4589999999998876543322111 12468999999998


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCC-----cHHHHHHHHHHHHHhh
Q 010533          411 FSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPN-----AQQLQRSSCFMIRNLV  473 (508)
Q Consensus       411 ~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~-----~~~vq~~A~~aL~nL~  473 (508)
                      |. +..|.-.+.+.|+|...+......-.+..|++++|...+.+++.     ++.-++-||..++|..
T Consensus       336 h~-eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~L  402 (619)
T 3c2g_A          336 HP-DDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCL  402 (619)
T ss_dssp             CC-CHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHH
T ss_pred             CC-CcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHH
Confidence            75 57888999999999998777777778889999999998765543     2344566888888854

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=94.17  E-value=5.1  Score=39.97  Aligned_cols=289  Identities=15%  Similarity=0.154  Sum_probs=160.1

Q ss_pred             ChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHH--hcCChHHHHHHHhcCCCCHHHHHHH
Q 010533          162 GSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFR--TGGGPKLLVNILIDGNEDPEILNSG  239 (508)
Q Consensus       162 ~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~--~~ggi~~Lv~lL~~~~~~~~v~~~a  239 (508)
                      +.....-++++++|..+......   ++.++.....+.|..+.+.   +.-..  -..-+|.++..+..+ ++.++.-.+
T Consensus       273 dSnAIDGFVk~DGv~~I~TvinY---pN~~l~RaG~KLLLQVSDa---ksL~~t~L~e~LPFi~~~i~~h-~eDdvvYSG  345 (619)
T 3c2g_A          273 DSDAIDGFVRSDGVGAITTVVQY---PNNDLIRAGCKLLLQVSDA---KALAKTPLENILPFLLRLIEIH-PDDEVIYSG  345 (619)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTS---SCHHHHHHHHHHHHHHTTC---GGGGTSCCTTHHHHHHHHHHHC-CCHHHHHHH
T ss_pred             ccccccceeecccceeEEEEeec---CCcHHHHhhhheeeeecch---HHHhhccccccchHHHHHhccC-CCcceEEec
Confidence            55556778899999999988877   3677877777777665542   11111  134678888888865 678999999


Q ss_pred             HHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-------HHHHHHHHHHHHhc------------CCCcchhhhhh
Q 010533          240 FAVVAASATGNEVVKESYMELKIDELILEILSRQRN-------DSIQSLYDAIRVLL------------TPDDDQVVASQ  300 (508)
Q Consensus       240 ~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-------~~~~~A~~aL~~L~------------~~dd~r~~~~~  300 (508)
                      ...|++........|+.-+..|+|++|-.++.....       ....-||..++|-.            ..+..+.+.|.
T Consensus       346 TGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~G~  425 (619)
T 3c2g_A          346 TGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTAGP  425 (619)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCCCH
T ss_pred             chHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccCCh
Confidence            999999987777788888899999999998876432       22333565554421            12333444443


Q ss_pred             cch-HHHHHHhcCCHHHHHHHHhcCC-C-hhHHH---HHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHH
Q 010533          301 VYG-YARRFAKIGIARALVHSLHAGL-S-SPSLI---SASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTV  374 (508)
Q Consensus       301 a~~-~~~~i~~~g~i~~Lv~lL~~~~-d-~~~~~---~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v  374 (508)
                      ... .++.+.|...++.|+..|.-.. | +.+++   ....-..-+...+..-+     .|   +++...+... .  .+
T Consensus       426 ~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~Pk-----d~---~l~VtDd~rk-~--NL  494 (619)
T 3c2g_A          426 NEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVPK-----DG---VLNVIDENRK-E--NL  494 (619)
T ss_dssp             HHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSCC-----TT---GGGCCCTTTC-C--CH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCch-----hh---hccccchhhh-h--hh
Confidence            222 3444555567788888877533 4 32332   22221111222221111     11   1112222111 1  34


Q ss_pred             HHHHHHHHHHhhC---C---chhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHH--HHHHHHhcCCh----------hhH
Q 010533          375 ARICCSLLSKLAG---S---DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVM--SIITVLSLRSP----------ENA  436 (508)
Q Consensus       375 ~~~al~aL~~La~---~---~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~--~aL~~La~~~~----------~~~  436 (508)
                      +-..|.++.---+   +   .+-|+.+++ ..+..|+.+|.++.....|....-  .+=.+|-.++.          ..+
T Consensus       495 vGHIciA~sWa~~Q~tNertqdTkqQLiE-R~fSLL~~LmEQc~~E~qVAh~~YsIsCPLnlLn~nQ~KP~FI~NVL~Vc  573 (619)
T 3c2g_A          495 IGHICAAYSWVFRQPNNTRTQSTKQQLVE-RTISLLLVLMEQCGAEKEVAQYSYSIDCPLNLLNGNQVKPTFIHNVLVVC  573 (619)
T ss_dssp             HHHHHHHHHHHHHSCCCTTTHHHHHHHHH-HHHHHHHHHHHHTTCHHHHHHTTTTSCCGGGGGSSCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCccccchhhHHHHHHH-HHHHHHHHHHHHhhhHHHHHhheeeccCchhhhcccccChHHHHHHHHHH
Confidence            4455555443322   1   234566665 467888888887654443332211  11111111110          123


Q ss_pred             HHHHhcC--------cHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 010533          437 ARAMEAG--------SGDLAIQAMLKFPNAQQLQRSSCFMIR  470 (508)
Q Consensus       437 ~~i~~~G--------~i~~Lv~~L~~h~~~~~vq~~A~~aL~  470 (508)
                      ..|++..        .-...++.++.|++ +++.+.|...|+
T Consensus       574 DKILeHcP~~Ad~W~i~r~tle~l~NHsN-sDIa~aasSLL~  614 (619)
T 3c2g_A          574 DKILEHCPTRADIWTIDRPMLEGLTNHRN-SDIAKAANSLLS  614 (619)
T ss_dssp             HHHHHHCTTHHHHSCCCHHHHHHHHTCSS-HHHHHHHHHHHT
T ss_pred             HHHHHhCcchhccceechHHHHHHhcCCC-chHHHHHHHHHH
Confidence            3333321        23566788888864 666666666554

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=93.57  E-value=1.9  Score=48.93  Aligned_cols=222  Identities=11%  Similarity=0.079  Sum_probs=116.0

Q ss_pred             CHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCC---CCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHH
Q 010533          189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGN---EDPEILNSGFAVVAASATGNEVVKESYMELKIDEL  265 (508)
Q Consensus       189 ~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~---~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~  265 (508)
                      +......++.++.++..+.....    ...++.++.+|..-.   .++.++..++++|+..+..-..+.+.+.  .+++.
T Consensus       477 ~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl~~  550 (971)
T 2x1g_F          477 HWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP--PAINL  550 (971)
T ss_dssp             CCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH--HHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHH
Confidence            44455566777777765432111    234555666553222   3789999999999987642222222111  35666


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCC-ChhHHHHHHHHHHHhhcC-
Q 010533          266 ILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SSPSLISASIALKAVAVN-  343 (508)
Q Consensus       266 Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~-d~~~~~~a~~aL~~La~~-  343 (508)
                      |+..|.   ..+...||++|..|+.+  .+..+   ..|..     ..+..|.+++.+.. +...+..+..+++.++.. 
T Consensus       551 l~~~l~---~~v~~~A~~al~~l~~~--~~~~l---~p~~~-----~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~  617 (971)
T 2x1g_F          551 LVRGLN---SSMSAQATLGLKELCRD--CQLQL---KPYAD-----PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL  617 (971)
T ss_dssp             HHHHHH---SSCHHHHHHHHHHHHHH--CHHHH---HHHHH-----HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHhC---hHHHHHHHHHHHHHHHH--HHHhc---cccHH-----HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence            777773   46788899999999832  22111   01222     34566677777643 456677777777777642 


Q ss_pred             -hhhHhHHhhcCCHHHHHHHHhccCCCC--cH---HHHHHHHHHHHHhhC---Cc--hhH------H--HHHhCCcHHHH
Q 010533          344 -DEICKSVAENGGIDALLRCIDDSGLQG--NK---TVARICCSLLSKLAG---SD--SNK------S--AIIENGGMDKL  404 (508)
Q Consensus       344 -~e~~~~i~e~Ggi~~Lv~lL~~~~~~~--~~---~v~~~al~aL~~La~---~~--~~k------~--~Iv~~Ggl~~L  404 (508)
                       .+.+....+ .-+++++..+....+..  +.   .-...++..|..+..   ..  +..      .  .-.....++.+
T Consensus       618 ~~~~~~~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l  696 (971)
T 2x1g_F          618 RPEEIPKYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIF  696 (971)
T ss_dssp             CTTHHHHHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHH
T ss_pred             CHHHHHHHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHH
Confidence             122222221 12344444433211111  11   122233444433321   10  000      0  01123567888


Q ss_pred             HHHHhccCCCHHHHHHHHHHHHHHhc
Q 010533          405 IVVSARFSDDASVLQEVMSIITVLSL  430 (508)
Q Consensus       405 v~lL~~~~~~~~v~e~a~~aL~~La~  430 (508)
                      ..++..+..+..+.+.+|+++..++.
T Consensus       697 ~~~l~~~~~~~~v~e~~~~~~~~~~~  722 (971)
T 2x1g_F          697 KRIAEMWVEEIDVLEAACSAMKHAIT  722 (971)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccccHHHHHHHHHHHHHHHH
Confidence            88887666688999999999999763

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=93.47  E-value=8.8  Score=43.44  Aligned_cols=225  Identities=9%  Similarity=0.027  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcC-----ChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHH
Q 010533          234 EILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ-----RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRF  308 (508)
Q Consensus       234 ~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~-----~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i  308 (508)
                      +++..++.++..++..+...-...+. ..++..+..+...     .+.+...++..+..++.....+..+. ..++...+
T Consensus       261 ~vk~~~~~~l~~l~~~~~~~f~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~-~~~~l~~l  338 (960)
T 1wa5_C          261 KVKSSIQELVQLYTTRYEDVFGPMIN-EFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFN-NESAMNNI  338 (960)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGC-SHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHc-CchHHHHH
Confidence            45667777777766544432111221 3566667777531     22566667777777764322111110 11333333


Q ss_pred             HhcCCHHHHHHHHh----c-----------------CCC-hhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhcc
Q 010533          309 AKIGIARALVHSLH----A-----------------GLS-SPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDS  366 (508)
Q Consensus       309 ~~~g~i~~Lv~lL~----~-----------------~~d-~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~  366 (508)
                      ++    +.++..|.    .                 ..+ .+....+..+|..|+..-.  ..+.. -.++.+...+...
T Consensus       339 i~----~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~--~~v~~-~~l~~i~~~l~~~  411 (960)
T 1wa5_C          339 TE----QIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE--VLVTN-IFLAHMKGFVDQY  411 (960)
T ss_dssp             HH----HTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH--HHHHH-HHHHHHHHHHHHH
T ss_pred             HH----HHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc--hhHHH-HHHHHHHHHHHHh
Confidence            32    22222221    0                 011 1233455556666665322  11111 0123333444421


Q ss_pred             C--CCCcHHHHHHHHHHHHHhhCCchhHHHHHhC-----CcHH----HHHHHHhcc-CCCHHHHHHHHHHHHHHhcC-Ch
Q 010533          367 G--LQGNKTVARICCSLLSKLAGSDSNKSAIIEN-----GGMD----KLIVVSARF-SDDASVLQEVMSIITVLSLR-SP  433 (508)
Q Consensus       367 ~--~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~-----Ggl~----~Lv~lL~~~-~~~~~v~e~a~~aL~~La~~-~~  433 (508)
                      .  ...+....+.|+.+++.++........-...     ...+    .++..|... ..++.++..+|++|..++.. .+
T Consensus       412 ~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~  491 (960)
T 1wa5_C          412 MSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK  491 (960)
T ss_dssp             HC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH
T ss_pred             ccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH
Confidence            0  1224568889999999997321100000000     1112    233334421 12799999999999999853 22


Q ss_pred             hhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhh
Q 010533          434 ENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA  474 (508)
Q Consensus       434 ~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~  474 (508)
                      +..     ...++.+++.|.  ..+..|+..||+||.+++.
T Consensus       492 ~~l-----~~~l~~l~~~L~--d~~~~V~~~A~~Al~~~~~  525 (960)
T 1wa5_C          492 AQL-----IELMPILATFLQ--TDEYVVYTYAAITIEKILT  525 (960)
T ss_dssp             HHH-----HHHHHHHHHHTT--CSCHHHHHHHHHHHHHHTT
T ss_pred             HHH-----HHHHHHHHHHhC--CCChhHHHHHHHHHHHHHh
Confidence            221     234667777774  2468899999999999876

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=93.25  E-value=1.9  Score=41.10  Aligned_cols=159  Identities=15%  Similarity=0.100  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCC---HHHHHHHHHHHHHhhc-CChhhHHHHHHcCcHHHH
Q 010533          191 RVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNED---PEILNSGFAVVAASAT-GNEVVKESYMELKIDELI  266 (508)
Q Consensus       191 ~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~---~~v~~~a~~~L~~l~~-~~e~nr~~i~~~G~i~~L  266 (508)
                      .-.++|+..+-+++...+.|..|+++.-+-.|--+|...+.+   +-+.-..+.+++.+.. ++.+.-..++..+.+|..
T Consensus        71 nRVcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplC  150 (268)
T 2fv2_A           71 NRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLC  150 (268)
T ss_dssp             HHHHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHH
T ss_pred             hHHHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHH
Confidence            446778888888887778889999999988888888765443   3456677788888764 334445556688999999


Q ss_pred             HHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhh
Q 010533          267 LEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEI  346 (508)
Q Consensus       267 v~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~  346 (508)
                      ++.|..+++-...-|.-.+..+..+|..-.-+.+..+.--.+.  ..+..++.-|...+++.+++.+..+--.|+.++..
T Consensus       151 Lrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~--~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ra  228 (268)
T 2fv2_A          151 LRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVA--MILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRA  228 (268)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHH--HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHH
Confidence            9999998763333344445555544432111122222211121  23444444454445677888888887788877766


Q ss_pred             HhHHh
Q 010533          347 CKSVA  351 (508)
Q Consensus       347 ~~~i~  351 (508)
                      +..+.
T Consensus       229 r~aL~  233 (268)
T 2fv2_A          229 REALR  233 (268)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65444

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=92.83  E-value=3.3  Score=39.45  Aligned_cols=173  Identities=13%  Similarity=0.218  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh----HHHH-HHHHHHHHhcCCCcchhhhhhcchHHHHHHh
Q 010533          236 LNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN----DSIQ-SLYDAIRVLLTPDDDQVVASQVYGYARRFAK  310 (508)
Q Consensus       236 ~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~----~~~~-~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~  310 (508)
                      .+.++..+..+|+ |++.|..|++++..-.|...|+..+.    +.++ ...+++..|...||..+        ...+.+
T Consensus        73 VcnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eV--------i~fLL~  143 (268)
T 2fv2_A           73 VCNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEV--------INFLLT  143 (268)
T ss_dssp             HHHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHH--------HHHHHH
T ss_pred             HHHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHH--------HHHHHh
Confidence            3455566666654 78899999999998889999987643    4444 46788888887776433        344557


Q ss_pred             cCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcCh----------hhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHH
Q 010533          311 IGIARALVHSLHAGLSSPSLISASIALKAVAVND----------EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCS  380 (508)
Q Consensus       311 ~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~----------e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~  380 (508)
                      .+.+|..+..|+.|++- .+.-+..-+..+-.++          |--..+..  .+..++.-|   .+.+++.+.+..++
T Consensus       144 tEiiplCLrime~Gsel-SKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~--vL~~mV~~l---~~~ps~RLLKhiir  217 (268)
T 2fv2_A          144 TEIIPLCLRIMESGSEL-SKTVATFILQKILLDDTGLAYICQTYERFSHVAM--ILGKMVLQL---SKEPSARLLKHVVR  217 (268)
T ss_dssp             TTHHHHHHHHHHHSCHH-HHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHH--HHHHHHHHT---TTSCCHHHHHHHHH
T ss_pred             hhHHHHHHHHHhhccHH-HHHHHHHHHHHHhccchhHHHHHccHHHHHHHHH--HHHHHHHHH---hcCCChHHHHHHHH
Confidence            88999999999998631 1222222233333333          22222211  122233323   23456789999999


Q ss_pred             HHHHhhCCchhHHHHHhCCcHHH------HHHHHhccCCCHHHHHHHHHHHHHH
Q 010533          381 LLSKLAGSDSNKSAIIENGGMDK------LIVVSARFSDDASVLQEVMSIITVL  428 (508)
Q Consensus       381 aL~~La~~~~~k~~Iv~~Ggl~~------Lv~lL~~~~~~~~v~e~a~~aL~~L  428 (508)
                      +--.|+.|+..++++..  .+|.      +-.+++   +++..++.-...+.|+
T Consensus       218 cYlRLsdn~rar~aL~~--~LP~~Lrd~tf~~~l~---~D~~~k~~l~qLl~n~  266 (268)
T 2fv2_A          218 CYLRLSDNPRAREALRQ--CLPDQLKDTTFAQVLK---DDTTTKRWLAQLVKNL  266 (268)
T ss_dssp             HHHHHTTSHHHHHHHHH--HSCGGGTSSTTHHHHT---SCHHHHHHHHHHHHHS
T ss_pred             HHHHHhcCHHHHHHHHH--hCcHHhhChHHHHHHh---cCHHHHHHHHHHHHhc
Confidence            99999999888888764  2222      223333   4666666655555554

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=92.76  E-value=10  Score=42.99  Aligned_cols=184  Identities=9%  Similarity=0.042  Sum_probs=100.5

Q ss_pred             CHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcc----hhhh--hhcchHH
Q 010533          232 DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDD----QVVA--SQVYGYA  305 (508)
Q Consensus       232 ~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~----r~~~--~~a~~~~  305 (508)
                      ++-++..++|+|+..+..-  .++.+  ..+++.++..|...+..++..||++|.+++..++.    ...+  ..-..|.
T Consensus       471 ~p~vr~~a~~~lg~~~~~~--~~~~l--~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l  546 (960)
T 1wa5_C          471 HIILRVDAIKYIYTFRNQL--TKAQL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNST  546 (960)
T ss_dssp             CHHHHHHHHHHHHHTGGGS--CHHHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTH
T ss_pred             CceehHHHHHHHHHHHhhC--CHHHH--HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhH
Confidence            7899999999999987542  22222  23577788888765557888999999999864220    0000  0011222


Q ss_pred             HHHHhcCCHHHHHHHHhcCC-Ch---hHHHHHHHHHHHhhc--ChhhHhHHhhcCCHHHHHHHHhccC-CCCcHHHHHHH
Q 010533          306 RRFAKIGIARALVHSLHAGL-SS---PSLISASIALKAVAV--NDEICKSVAENGGIDALLRCIDDSG-LQGNKTVARIC  378 (508)
Q Consensus       306 ~~i~~~g~i~~Lv~lL~~~~-d~---~~~~~a~~aL~~La~--~~e~~~~i~e~Ggi~~Lv~lL~~~~-~~~~~~v~~~a  378 (508)
                      .     ..++.|+.++.... .+   .....+..+|..++.  .++....+.  .-++.|+..+.... +..++.+...+
T Consensus       547 ~-----~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~--~l~~~L~~~l~~~~~~~~~~~~~~~~  619 (960)
T 1wa5_C          547 E-----ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP--QLLAQFIEIVTIMAKNPSNPRFTHYT  619 (960)
T ss_dssp             H-----HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH--HHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred             H-----HHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence            2     24567777777641 00   012344445544432  122222111  12355555554321 12245677778


Q ss_pred             HHHHHHhhC--CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010533          379 CSLLSKLAG--SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS  429 (508)
Q Consensus       379 l~aL~~La~--~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La  429 (508)
                      +.+|+.++.  .++....+ ....+|.+...|..+.  ....+.+...+..+.
T Consensus       620 ~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~iL~~~~--~~~~~~~~~i~~~l~  669 (960)
T 1wa5_C          620 FESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSEDI--QEFIPYVFQIIAFVV  669 (960)
T ss_dssp             HHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHTTC--TTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCcchHHHH-HHHHHHHHHHHHHhhh--HhhHHHHHHHHHHHH
Confidence            888888863  33333333 3346788888887433  345555555555443

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=92.64  E-value=5.2  Score=45.08  Aligned_cols=222  Identities=12%  Similarity=0.060  Sum_probs=120.3

Q ss_pred             CHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCC-CCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHH
Q 010533          189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGN-EDPEILNSGFAVVAASATGNEVVKESYMELKIDELIL  267 (508)
Q Consensus       189 ~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~-~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv  267 (508)
                      +......++.++.++..+.....    ..-++.++..|..-. +++.++..++++|+..+..-..+.+ +. ..+++.|+
T Consensus       462 ~w~~~eaal~al~~i~~~~~~~~----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~l-~~vl~~l~  535 (963)
T 2x19_B          462 SWQHTEALLYGFQSIAETIDVNY----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-MI-NSVLPLVL  535 (963)
T ss_dssp             CHHHHHHHHHHHHHHTTSCCSSC----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-HH-TTTHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhcCchh----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-HH-HHHHHHHH
Confidence            44555566777777665432110    122445565553322 4788999999999987642222222 22 36888888


Q ss_pred             HHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCC-ChhHHHHHHHHHHHhhcC--h
Q 010533          268 EILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SSPSLISASIALKAVAVN--D  344 (508)
Q Consensus       268 ~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~-d~~~~~~a~~aL~~La~~--~  344 (508)
                      ..|..  ..+...||++|..++.+  .+..+   ..|...     .+..|..++.+.. +...+..+..+++.++..  .
T Consensus       536 ~~l~~--~~V~~~A~~al~~l~~~--~~~~l---~p~~~~-----il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~  603 (963)
T 2x19_B          536 HALGN--PELSVSSVSTLKKICRE--CKYDL---PPYAAN-----IVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQV  603 (963)
T ss_dssp             HHTTC--GGGHHHHHHHHHHHHHH--TGGGC---TTTHHH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCH
T ss_pred             HHhCC--chHHHHHHHHHHHHHHH--HHHHH---HhhHHH-----HHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCH
Confidence            88854  57888899999999842  21111   122222     2455556666533 455667777777777642  2


Q ss_pred             hhHhHHhhcCCHHHHHHHHhccCCC-CcHHHHH---HHHHHHHHhh---CC--ch---------------hHH--HHHhC
Q 010533          345 EICKSVAENGGIDALLRCIDDSGLQ-GNKTVAR---ICCSLLSKLA---GS--DS---------------NKS--AIIEN  398 (508)
Q Consensus       345 e~~~~i~e~Ggi~~Lv~lL~~~~~~-~~~~v~~---~al~aL~~La---~~--~~---------------~k~--~Iv~~  398 (508)
                      +......+ .-++++...+....+. .+.+...   ..+.+|..++   +.  +.               .+.  .-+..
T Consensus       604 ~~~~~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  682 (963)
T 2x19_B          604 EEILKNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQ  682 (963)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHH
Confidence            33333222 1234444444321000 1222322   3444444432   11  10               001  11223


Q ss_pred             CcHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010533          399 GGMDKLIVVSARFSDDASVLQEVMSIITVLS  429 (508)
Q Consensus       399 Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La  429 (508)
                      ..++.+..++..+..++.+.+.+|.++..++
T Consensus       683 ~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~  713 (963)
T 2x19_B          683 QVFQLIQKVLSKWLNDAQVVEAVCAIFEKSV  713 (963)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCchHHHHHHHHHHHHHH
Confidence            4567777788777778899999999988864

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=92.55  E-value=1.6  Score=41.04  Aligned_cols=130  Identities=12%  Similarity=0.179  Sum_probs=88.2

Q ss_pred             hhHhHHhhcCCHHHHHHHHhccCC-------CCcHHHHHHHHHHHHHhhCCchhHHHHHhC-CcHHHHHHHHhccCCCHH
Q 010533          345 EICKSVAENGGIDALLRCIDDSGL-------QGNKTVARICCSLLSKLAGSDSNKSAIIEN-GGMDKLIVVSARFSDDAS  416 (508)
Q Consensus       345 e~~~~i~e~Ggi~~Lv~lL~~~~~-------~~~~~v~~~al~aL~~La~~~~~k~~Iv~~-Ggl~~Lv~lL~~~~~~~~  416 (508)
                      +..+.+ ..||+..|++.|.....       ..+.+....++.+|+.|..+..+...+++. +++..|...|.  +.++.
T Consensus        35 ~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~--s~~~~  111 (233)
T 2f31_A           35 SWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD--PAVPN  111 (233)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCC--TTSHH
T ss_pred             HHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhC--CCCch
Confidence            556667 57899999998875321       114578889999999999888777777654 56888888887  77899


Q ss_pred             HHHHHHHHHHHHhcCCh-hh-HHHHHh----------cCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccc
Q 010533          417 VLQEVMSIITVLSLRSP-EN-AARAME----------AGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPEN  479 (508)
Q Consensus       417 v~e~a~~aL~~La~~~~-~~-~~~i~~----------~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~  479 (508)
                      ++..++-.|+.+|.-.. +. ...+++          ..-...+++.++.. .+... +.+|+.+-|....+++.
T Consensus       112 ~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~-~~~e~-~~~~m~lIN~li~~~~d  184 (233)
T 2f31_A          112 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG-TSIAL-KVGCLQLINALITPAEE  184 (233)
T ss_dssp             HHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT-SCHHH-HHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcC-ChHHH-HHHHHHHHHHHHCCCCC
Confidence            99999999999997432 22 222222          12234566655432 33343 46788888877666543

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=91.34  E-value=4.4  Score=40.60  Aligned_cols=89  Identities=11%  Similarity=-0.064  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHH
Q 010533          372 KTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQA  451 (508)
Q Consensus       372 ~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~  451 (508)
                      +-++..|+.+|.++...+ .-+.     ..+.+.++|.  ..+|-|+..|+.+...|...+|+..+     +.++.+-++
T Consensus       118 ~~iR~lALRtL~~I~~~~-m~~~-----l~~~lk~~L~--d~~pyVRk~A~l~~~kL~~~~pe~v~-----~~~~~l~~l  184 (355)
T 3tjz_B          118 DSYRGPAVRALCQITDST-MLQA-----IERYMKQAIV--DKVPSVSSSALVSSLHLLKCSFDVVK-----RWVNEAQEA  184 (355)
T ss_dssp             HHHHHHHHHHHHHHCCTT-THHH-----HHHHHHHHHT--CSSHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHH
T ss_pred             HhHHHHHHHHHhcCCCHH-HHHH-----HHHHHHHHcC--CCCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHHHH
Confidence            355555666666554322 1111     2234444554  44566666666666666655555322     345555555


Q ss_pred             HHcCCCcHHHHHHHHHHHHHhhhc
Q 010533          452 MLKFPNAQQLQRSSCFMIRNLVAR  475 (508)
Q Consensus       452 L~~h~~~~~vq~~A~~aL~nL~~~  475 (508)
                      +.  ..++.|+-.|..+|..+..+
T Consensus       185 l~--d~n~~V~~~Al~lL~ei~~~  206 (355)
T 3tjz_B          185 AS--SDNIMVQYHALGLLYHVRKN  206 (355)
T ss_dssp             TT--CSSHHHHHHHHHHHHHHHTT
T ss_pred             hc--CCCccHHHHHHHHHHHHHhh
Confidence            52  23455555555555555443

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=91.11  E-value=5.5  Score=37.49  Aligned_cols=156  Identities=10%  Similarity=0.035  Sum_probs=95.7

Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhc-cCCCCcHHHHHHHHHHHHHhhC--Cchh
Q 010533          315 RALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDD-SGLQGNKTVARICCSLLSKLAG--SDSN  391 (508)
Q Consensus       315 ~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~-~~~~~~~~v~~~al~aL~~La~--~~~~  391 (508)
                      ..+...|-.+...++..-++.+|..+ ..            .+.++.++.. ..+..+..|++.+..++..++.  .++.
T Consensus        73 ~~la~~L~~~~~deVR~~Av~lLg~~-~~------------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~  139 (240)
T 3l9t_A           73 KKLAFLAYQSDVYQVRMYAVFLFGYL-SK------------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK  139 (240)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHT-TT------------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT
T ss_pred             HHHHHHHHhCcchHHHHHHHHHHHhc-cC------------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH
Confidence            34445555554456777777777666 21            1223333332 2223467999999999998763  3331


Q ss_pred             HHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHH---HHHHHHHcCCCcHHHHHHHHHH
Q 010533          392 KSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGD---LAIQAMLKFPNAQQLQRSSCFM  468 (508)
Q Consensus       392 k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~---~Lv~~L~~h~~~~~vq~~A~~a  468 (508)
                              .++.+.....  .+++.|++.|.-.+.--|.+ +.-      ..-..   .+++-++.. .+.-||+..+|+
T Consensus       140 --------~l~~~~~W~~--d~n~~VRR~Ase~~rpW~~~-~~~------k~dp~~ll~iL~~L~~D-~s~yVrKSVan~  201 (240)
T 3l9t_A          140 --------ALPIIDEWLK--SSNLHTRRAATEGLRIWTNR-PYF------KENPNEAIRRIADLKED-VSEYVRKSVGNA  201 (240)
T ss_dssp             --------THHHHHHHHH--CSSHHHHHHHHHHTCSGGGS-TTT------TTCHHHHHHHHHTTTTC-SCHHHHHHHHHH
T ss_pred             --------HHHHHHHHhc--CCCHHHHHHHHHhhHHHhcc-chh------hcCHHHHHHHHHHhcCC-hHHHHHHHHHHH
Confidence                    5667777777  77899999888776543332 110      11122   233333332 346799999999


Q ss_pred             HHHhhhcCccchHHHHhccccccHHHHhhhhhc
Q 010533          469 IRNLVARNPENSFCSVMVSRNLSDRQRRTTKSA  501 (508)
Q Consensus       469 L~nL~~~~~e~~~~~~~~g~~~~~~~~~~~~~~  501 (508)
                      |+.++..+|+....+++.-..-........|.|
T Consensus       202 LrD~SK~~Pd~V~~~~~~w~~~~~~~~~i~k~A  234 (240)
T 3l9t_A          202 LRDISKKFPDLVKIELKNWKLESKEINQVYKLA  234 (240)
T ss_dssp             HHHHHTTCHHHHHHHHHTCCCCSHHHHHHHHHH
T ss_pred             HHHHhhhCHHHHHHHHHHhhccCHhHHHHHHHH
Confidence            999999999999999987433345555555543

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=90.63  E-value=6.6  Score=44.40  Aligned_cols=217  Identities=7%  Similarity=0.011  Sum_probs=114.6

Q ss_pred             CHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHH---hcC--ChHHHHHHHHHHHHhcCCCcchhhhhhcchHHH
Q 010533          232 DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEIL---SRQ--RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYAR  306 (508)
Q Consensus       232 ~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL---~~~--~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~  306 (508)
                      +-...+.++.+++.++.+.....     ...++.++.++   ...  ...+...+||+|..++..-      ....++..
T Consensus       477 ~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l------~~~~~~l~  545 (971)
T 2x1g_F          477 HWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWL------MENPAYIP  545 (971)
T ss_dssp             CCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHH------C----CHH
T ss_pred             cHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHH------hcCHHHHH
Confidence            44567788888888765433211     13344455544   211  3356777999999887311      00011111


Q ss_pred             HHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhh--cCCHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Q 010533          307 RFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAE--NGGIDALLRCIDDSGLQGNKTVARICCSLLSK  384 (508)
Q Consensus       307 ~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e--~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~  384 (508)
                           ..++.|+..| +   +.+...+|.++.+++..  ....+.-  .+-+..+..++....  .+.+....++.++..
T Consensus       546 -----~vl~~l~~~l-~---~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~--~~~~~~~~~~~ai~~  612 (971)
T 2x1g_F          546 -----PAINLLVRGL-N---SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGR--MKNSDSVRLMFSIGK  612 (971)
T ss_dssp             -----HHHHHHHHHH-H---SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTT--SCHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHh-C---hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCC--CChHHHHHHHHHHHH
Confidence                 2456666666 2   45788999999999842  1122211  112344556666421  123677788888888


Q ss_pred             hhCC--chhHHHHHhCCcHHHHHHHHhccCC----CHHHHHHHHHHHHHHh---c--CC-----------hhhHHHHHhc
Q 010533          385 LAGS--DSNKSAIIENGGMDKLIVVSARFSD----DASVLQEVMSIITVLS---L--RS-----------PENAARAMEA  442 (508)
Q Consensus       385 La~~--~~~k~~Iv~~Ggl~~Lv~lL~~~~~----~~~v~e~a~~aL~~La---~--~~-----------~~~~~~i~~~  442 (508)
                      ++..  ++......+ .-+++++..+.....    ++........+|..|+   .  ..           ++....+ ..
T Consensus       613 i~~~~~~~~~~~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~  690 (971)
T 2x1g_F          613 LMSLLRPEEIPKYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLV-MQ  690 (971)
T ss_dssp             HHHTSCTTHHHHHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHH-HH
T ss_pred             HHHhCCHHHHHHHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHH-HH
Confidence            7642  233333322 244566655442211    2223333333333332   1  11           1111111 23


Q ss_pred             CcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhh
Q 010533          443 GSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA  474 (508)
Q Consensus       443 G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~  474 (508)
                      ...+.+..++..+.++..+.+.+|++++.++.
T Consensus       691 ~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~  722 (971)
T 2x1g_F          691 RTMPIFKRIAEMWVEEIDVLEAACSAMKHAIT  722 (971)
T ss_dssp             TTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            46778888887777778899999999999764

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=89.78  E-value=14  Score=41.44  Aligned_cols=219  Identities=10%  Similarity=0.025  Sum_probs=120.9

Q ss_pred             CCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhc---CChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHH
Q 010533          231 EDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSR---QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARR  307 (508)
Q Consensus       231 ~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~---~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~  307 (508)
                      .+-...+.++.+++.++.+.....     ...++.++..+..   +...+...+||++..++..-      .   ++.+ 
T Consensus       461 ~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l------~---~~~~-  525 (963)
T 2x19_B          461 YSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWL------A---DHPV-  525 (963)
T ss_dssp             CCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHH------H---HCHH-
T ss_pred             CchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH------H---hCHH-
Confidence            456778888999988865433211     1234445555432   23356778999999886310      0   1111 


Q ss_pred             HHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhh--cCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHh
Q 010533          308 FAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAE--NGGIDALLRCIDDSGLQGNKTVARICCSLLSKL  385 (508)
Q Consensus       308 i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e--~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~L  385 (508)
                      .. ...++.|+..|.+   +.+...+|.+|.+++..  ....+.-  ..-+..|..++... + .+......++.+++.+
T Consensus       526 ~l-~~vl~~l~~~l~~---~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~-~-~~~~~~~~~~eai~~i  597 (963)
T 2x19_B          526 MI-NSVLPLVLHALGN---PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQ-I-HKTSQCMWLMQALGFL  597 (963)
T ss_dssp             HH-TTTHHHHHHHTTC---GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTT-C-SCHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHhCC---chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccC-C-CChHHHHHHHHHHHHH
Confidence            22 2578888888743   67889999999999842  1122221  01123344455532 1 1246788888888888


Q ss_pred             hCC-c-hhHHHHHhCCcHHHHHHHHhc---cCCCHHHHH---HHHHHHHHHhc--C--Ch------------------hh
Q 010533          386 AGS-D-SNKSAIIENGGMDKLIVVSAR---FSDDASVLQ---EVMSIITVLSL--R--SP------------------EN  435 (508)
Q Consensus       386 a~~-~-~~k~~Iv~~Ggl~~Lv~lL~~---~~~~~~v~e---~a~~aL~~La~--~--~~------------------~~  435 (508)
                      +.. + +.....++ ..+++++..+..   ...++..+.   ....+|+.+..  +  .+                  +.
T Consensus       598 ~~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  676 (963)
T 2x19_B          598 LSALQVEEILKNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNP  676 (963)
T ss_dssp             HTTSCHHHHHHHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCH
T ss_pred             HhcCCHHHHHHHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCc
Confidence            642 2 33333332 345566555542   122444433   23333333321  1  11                  11


Q ss_pred             HHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhh
Q 010533          436 AARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA  474 (508)
Q Consensus       436 ~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~  474 (508)
                      ...+ .....+.+.+++..+..+..+.+.+|.+++.++.
T Consensus       677 ~~~~-~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~  714 (963)
T 2x19_B          677 VVVV-LQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVK  714 (963)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHH-HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH
Confidence            1122 2335677777787777778888999999999864

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=89.20  E-value=7  Score=39.59  Aligned_cols=130  Identities=12%  Similarity=0.183  Sum_probs=88.2

Q ss_pred             hhHhHHhhcCCHHHHHHHHhccCC-------CCcHHHHHHHHHHHHHhhCCchhHHHHHhC-CcHHHHHHHHhccCCCHH
Q 010533          345 EICKSVAENGGIDALLRCIDDSGL-------QGNKTVARICCSLLSKLAGSDSNKSAIIEN-GGMDKLIVVSARFSDDAS  416 (508)
Q Consensus       345 e~~~~i~e~Ggi~~Lv~lL~~~~~-------~~~~~v~~~al~aL~~La~~~~~k~~Iv~~-Ggl~~Lv~lL~~~~~~~~  416 (508)
                      +..+.+. .||+..|++.|.....       ..+......++.+|+.|..+..+...+... +++..|...|.  +.++.
T Consensus        39 ~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~--s~~~~  115 (386)
T 2bnx_A           39 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD--PAVPN  115 (386)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCC--TTSHH
T ss_pred             HHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhC--CCCch
Confidence            4556664 6899999988864311       114578899999999999888777766654 57888888887  77899


Q ss_pred             HHHHHHHHHHHHhcCCh-hh-HHHHH----------hcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccc
Q 010533          417 VLQEVMSIITVLSLRSP-EN-AARAM----------EAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPEN  479 (508)
Q Consensus       417 v~e~a~~aL~~La~~~~-~~-~~~i~----------~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~  479 (508)
                      ++..++-.|+.+|.-.. +. ...++          +..-...+++.++.+ .+... +.+|+.+-|....+++.
T Consensus       116 ~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~-~~~e~-~~a~m~lIN~lv~~~~d  188 (386)
T 2bnx_A          116 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG-TSIAL-KVGCLQLINALITPAEE  188 (386)
T ss_dssp             HHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT-SCHHH-HHHHHHHHHHHHTTCSC
T ss_pred             HHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcC-ChHHH-HHHHHHHHHHHHCCCCC
Confidence            99999999999997443 22 22222          122345566766543 33444 46788888877666553

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=88.95  E-value=8.9  Score=38.75  Aligned_cols=129  Identities=12%  Similarity=0.181  Sum_probs=88.4

Q ss_pred             hhHhHHhhcCCHHHHHHHHhccC-------CCCcHHHHHHHHHHHHHhhCCchhHHHHHhC-CcHHHHHHHHhccCCCHH
Q 010533          345 EICKSVAENGGIDALLRCIDDSG-------LQGNKTVARICCSLLSKLAGSDSNKSAIIEN-GGMDKLIVVSARFSDDAS  416 (508)
Q Consensus       345 e~~~~i~e~Ggi~~Lv~lL~~~~-------~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~-Ggl~~Lv~lL~~~~~~~~  416 (508)
                      ...+.++ .+|+..|+++|....       ...+......++.+|+.|..+..+...+++. .++..|..+|.  +.++.
T Consensus       101 sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~--s~~~~  177 (383)
T 3eg5_B          101 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD--PAVPN  177 (383)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCC--TTSHH
T ss_pred             HHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhC--CCchH
Confidence            5566676 789999999986321       0123578889999999999888777777654 46899999887  77899


Q ss_pred             HHHHHHHHHHHHhcCCh-hh-HHHHHh----------cCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCcc
Q 010533          417 VLQEVMSIITVLSLRSP-EN-AARAME----------AGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPE  478 (508)
Q Consensus       417 v~e~a~~aL~~La~~~~-~~-~~~i~~----------~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e  478 (508)
                      ++..++-.|+.+|.-+. ++ ...+++          ..-...++..|+.. .+... +.+|+.+-|....+++
T Consensus       178 ~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~-~~~e~-~~~~m~lIN~li~~~~  249 (383)
T 3eg5_B          178 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG-TSIAL-KVGCLQLINALITPAE  249 (383)
T ss_dssp             HHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT-SCHHH-HHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHcc-CcHHH-HHHHHHHHHHHHcCCC
Confidence            99999999999997542 33 333322          22355666666543 33444 3577877787665543

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=88.60  E-value=5.3  Score=45.64  Aligned_cols=313  Identities=10%  Similarity=0.076  Sum_probs=145.5

Q ss_pred             hHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCc---chhHHHhcCC
Q 010533          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQ---STETFRTGGG  218 (508)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~---~~~~i~~~gg  218 (508)
                      +.+....+|..|..+..-  -+.  ..+...+.++.+.++|..     .++...|+.+|..+.....   .+..++..=.
T Consensus       206 ~~~l~~~~L~~l~s~i~w--i~~--~~i~~~~ll~~l~~~L~~-----~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~  276 (980)
T 3ibv_A          206 NYGTVGLCLQVYAQWVSW--INI--NLIVNEPCMNLLYSFLQI-----EELRCAACETMTEIVNKKMKPLEKLNLLNILN  276 (980)
T ss_dssp             CHHHHHHHHHHHHHHTTT--SCH--HHHHCHHHHHHHHHHTTS-----HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhh--cCH--HhhhcchHHHHHHHHcCC-----hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHh
Confidence            456667888888888763  232  255666778888877754     4666777777777665332   1222222201


Q ss_pred             hHHHHHHHhcCCCCHHHHHHHHHHHHHhhc-------CC----hhhHHHHH--HcCcHHHHHHHHhcCChHHHHHHHHHH
Q 010533          219 PKLLVNILIDGNEDPEILNSGFAVVAASAT-------GN----EVVKESYM--ELKIDELILEILSRQRNDSIQSLYDAI  285 (508)
Q Consensus       219 i~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~-------~~----e~nr~~i~--~~G~i~~Lv~lL~~~~~~~~~~A~~aL  285 (508)
                      +..++..+....+|.++.+..++.+..++.       ..    ++.+....  -.+.++.++..+..+++++-..++..+
T Consensus       277 L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw  356 (980)
T 3ibv_A          277 LNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFL  356 (980)
T ss_dssp             HHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHH
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence            111111111113466665554544433321       11    11111111  125778888888776665555444444


Q ss_pred             HHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCC----h-----------hHHHHHHHHHHHhhc-ChhhHhH
Q 010533          286 RVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLS----S-----------PSLISASIALKAVAV-NDEICKS  349 (508)
Q Consensus       286 ~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d----~-----------~~~~~a~~aL~~La~-~~e~~~~  349 (508)
                      ..+.........-....+..+.+.. ..++.++.-++--.+    .           +...++...+..++. .++.+-.
T Consensus       357 ~~~l~~~~~~~~~~~~~~~~~~~l~-~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~  435 (980)
T 3ibv_A          357 SDLLVSLRKESSSKELSASLKEFLK-SLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSS  435 (980)
T ss_dssp             HHHHHHHHHHTTSCCCCHHHHHHHH-HHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHhccccccccHHHHHHHH-HHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence            3332110000000000011111110 123333333331100    0           222333322222222 2222221


Q ss_pred             -HhhcCCHHHHHHHHhccC---CCCcHHHHHHHHHHHHHhhCC-chhHHHH-HhCCcHHHHHHHHhcc-------CCCHH
Q 010533          350 -VAENGGIDALLRCIDDSG---LQGNKTVARICCSLLSKLAGS-DSNKSAI-IENGGMDKLIVVSARF-------SDDAS  416 (508)
Q Consensus       350 -i~e~Ggi~~Lv~lL~~~~---~~~~~~v~~~al~aL~~La~~-~~~k~~I-v~~Ggl~~Lv~lL~~~-------~~~~~  416 (508)
                       +.+     .+...+....   ...++.-.+.++.+|..++.. ..+...+ -....+|.|+.+|.+-       ..++.
T Consensus       436 ~~~~-----~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~  510 (980)
T 3ibv_A          436 YMYS-----AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPL  510 (980)
T ss_dssp             HHHH-----HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHH
T ss_pred             HHHH-----HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHH
Confidence             110     2222332211   112467889999999999852 2211111 0112334444433221       35789


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHc----CCCcHHHHHHHHHHHHHhhhc
Q 010533          417 VLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLK----FPNAQQLQRSSCFMIRNLVAR  475 (508)
Q Consensus       417 v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~----h~~~~~vq~~A~~aL~nL~~~  475 (508)
                      |+..+|+++...+.--..      ....++.+++.+-.    +..++.|+..||.++.+++..
T Consensus       511 V~~~~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~  567 (980)
T 3ibv_A          511 VQLLYMEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKS  567 (980)
T ss_dssp             HHHHHHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHH
Confidence            999999999987642111      12345666666544    224568999999999999864

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=88.31  E-value=15  Score=37.15  Aligned_cols=152  Identities=14%  Similarity=0.155  Sum_probs=93.2

Q ss_pred             hHHHhcCChHHHHHHHhcC---------CCCHHHHHHHHHHHHHhhcCChhhHHHHHHc-CcHHHHHHHHhcCChHHHHH
Q 010533          211 ETFRTGGGPKLLVNILIDG---------NEDPEILNSGFAVVAASATGNEVVKESYMEL-KIDELILEILSRQRNDSIQS  280 (508)
Q Consensus       211 ~~i~~~ggi~~Lv~lL~~~---------~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~-G~i~~Lv~lL~~~~~~~~~~  280 (508)
                      ..|. .+|+..|+++|..-         ..+...+..+++||..+. .+......++.. .++..|...|.+....+...
T Consensus       104 ~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-N~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~  181 (383)
T 3eg5_B          104 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAVPNMMID  181 (383)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-SSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHH
T ss_pred             HHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-cchhhHHHHHcChHHHHHHHHHhCCCchHHHHH
Confidence            4555 67899999988531         234578889999999885 455566666644 68888888887766677777


Q ss_pred             HHHHHHHhcCCCc--c-hhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc--Chh--h----HhH
Q 010533          281 LYDAIRVLLTPDD--D-QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV--NDE--I----CKS  349 (508)
Q Consensus       281 A~~aL~~L~~~dd--~-r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~--~~e--~----~~~  349 (508)
                      +...|..+|..++  . ....-.+.++.+...+..-..++++.|+...+.+... +|..|-|...  .++  .    ...
T Consensus       182 aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~-~~m~lIN~li~~~~dl~~R~~lR~e  260 (383)
T 3eg5_B          182 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKV-GCLQLINALITPAEELDFRVHIRSE  260 (383)
T ss_dssp             HHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHH-HHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            8888888886554  1 1111123344444345567888999888654444433 3444444322  222  2    233


Q ss_pred             HhhcCCHHHHHHHHhcc
Q 010533          350 VAENGGIDALLRCIDDS  366 (508)
Q Consensus       350 i~e~Ggi~~Lv~lL~~~  366 (508)
                      +... |+..++.-|+..
T Consensus       261 f~~~-Gl~~il~~lr~~  276 (383)
T 3eg5_B          261 LMRL-GLHQVLQELREI  276 (383)
T ss_dssp             HHHT-THHHHHHHHTTS
T ss_pred             HHHC-ChHHHHHHHhcC
Confidence            4455 556666667753

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=87.47  E-value=8.6  Score=35.88  Aligned_cols=151  Identities=15%  Similarity=0.156  Sum_probs=88.9

Q ss_pred             hHHHhcCChHHHHHHHhcC---------CCCHHHHHHHHHHHHHhhcCChhhHHHHHHc-CcHHHHHHHHhcCChHHHHH
Q 010533          211 ETFRTGGGPKLLVNILIDG---------NEDPEILNSGFAVVAASATGNEVVKESYMEL-KIDELILEILSRQRNDSIQS  280 (508)
Q Consensus       211 ~~i~~~ggi~~Lv~lL~~~---------~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~-G~i~~Lv~lL~~~~~~~~~~  280 (508)
                      ..| ..+|+..|+++|...         ..+...+..+++||..++ .+......++.. +++..|...|.+....+...
T Consensus        38 ~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm-n~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~  115 (233)
T 2f31_A           38 QTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAVPNMMID  115 (233)
T ss_dssp             HHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-SSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHH
T ss_pred             HHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-CChHHHHHHHcCcHHHHHHHHHhCCCCchHHHH
Confidence            455 468888888888642         114577888999999885 455556666644 68888888887666566677


Q ss_pred             HHHHHHHhcCCCc--c-hhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc-C-hh------hHhH
Q 010533          281 LYDAIRVLLTPDD--D-QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-N-DE------ICKS  349 (508)
Q Consensus       281 A~~aL~~L~~~dd--~-r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~-~-~e------~~~~  349 (508)
                      +...|..+|...+  . ....-.+.++.+...+..-..++++.|++..+.+.. .+|..+-|... . ++      ....
T Consensus       116 ~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~-~~~m~lIN~li~~~~dl~~R~~lR~e  194 (233)
T 2f31_A          116 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALK-VGCLQLINALITPAEELDFRVHIRSE  194 (233)
T ss_dssp             HHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHH-HHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHH-HHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence            7888888886543  1 111112333333333445677888888754343333 33444444322 2 21      1233


Q ss_pred             HhhcCCHHHHHHHHhc
Q 010533          350 VAENGGIDALLRCIDD  365 (508)
Q Consensus       350 i~e~Ggi~~Lv~lL~~  365 (508)
                      +... |+..+++-|+.
T Consensus       195 f~~~-Gl~~il~~l~~  209 (233)
T 2f31_A          195 LMRL-GLHQVLQELRE  209 (233)
T ss_dssp             HHHT-THHHHHHHHHH
T ss_pred             HHHC-ChHHHHHHHhc
Confidence            4444 56666667765

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=87.45  E-value=22  Score=34.59  Aligned_cols=138  Identities=10%  Similarity=0.047  Sum_probs=78.1

Q ss_pred             CHHHHHHHHHHHHHhhcCChhhHHHHHHc--CcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHH
Q 010533          232 DPEILNSGFAVVAASATGNEVVKESYMEL--KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA  309 (508)
Q Consensus       232 ~~~v~~~a~~~L~~l~~~~e~nr~~i~~~--G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~  309 (508)
                      .+..+-.+++++.|+. .++..|+.+...  .++..+...+...+..++..++.++.|++.---...    ..+...   
T Consensus       161 ~p~n~ml~lR~l~NlF-~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~----~~~~~~---  232 (304)
T 3ebb_A          161 KPANQLLALRTFCNCF-VGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDH----NIEGKA---  232 (304)
T ss_dssp             CHHHHHHHHHHHHHGG-GSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSC----CHHHHH---
T ss_pred             ChHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcC----CchHHH---
Confidence            4566788999999985 567788877753  233333333333334566667777888873110000    001111   


Q ss_pred             hcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHH
Q 010533          310 KIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLL  382 (508)
Q Consensus       310 ~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL  382 (508)
                        ..+..+..+++...|.+.+..+..||++|...+.....+.+.=++...++-+.+... +  .-+.+|+..|
T Consensus       233 --~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~-~--~kv~~~~~~~  300 (304)
T 3ebb_A          233 --QCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSE-P--AKVSECCRFI  300 (304)
T ss_dssp             --HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCS-S--HHHHHHHHHH
T ss_pred             --HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCC-c--hhHHHHHHHH
Confidence              134556666666568889999999999998755555555544444544444443322 2  2344555544

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=86.04  E-value=1.7  Score=50.02  Aligned_cols=97  Identities=11%  Similarity=0.092  Sum_probs=63.6

Q ss_pred             CcHHHHHHHHHHHHHhhCCch-h--HHHHHhCCcHHHHHHHHhccCC---CHHHHHHHHHHHHHHhc---CChhhHHHHH
Q 010533          370 GNKTVARICCSLLSKLAGSDS-N--KSAIIENGGMDKLIVVSARFSD---DASVLQEVMSIITVLSL---RSPENAARAM  440 (508)
Q Consensus       370 ~~~~v~~~al~aL~~La~~~~-~--k~~Iv~~Ggl~~Lv~lL~~~~~---~~~v~e~a~~aL~~La~---~~~~~~~~i~  440 (508)
                      .+....+.++.+++.+++... .  +..+.  ..++.|++++....+   .+.++..+|++|...+.   ++++.-..  
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~--~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~--  540 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVV--TVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRT--  540 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHH--HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHH--
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHHH--HHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHH--
Confidence            467899999999999997542 2  22233  467888888862111   23455678898887552   34443222  


Q ss_pred             hcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhc
Q 010533          441 EAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR  475 (508)
Q Consensus       441 ~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~  475 (508)
                         .+..|++.|  +.++++|+..|||++.+++..
T Consensus       541 ---vl~~L~~~l--~~~~~~v~~~A~~al~~l~~~  570 (1023)
T 4hat_C          541 ---VILKLFEFM--HETHEGVQDMACDTFIKIVQK  570 (1023)
T ss_dssp             ---HHHHHHHHT--TCSCHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHh--hcCCHHHHHHHHHHHHHHHHH
Confidence               233455555  445688999999999999864

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=85.91  E-value=10  Score=37.10  Aligned_cols=161  Identities=6%  Similarity=0.035  Sum_probs=88.0

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHH-HHhccCCCCcHHHHHHHHHHHHHhhCCchhH
Q 010533          314 ARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLR-CIDDSGLQGNKTVARICCSLLSKLAGSDSNK  392 (508)
Q Consensus       314 i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~-lL~~~~~~~~~~v~~~al~aL~~La~~~~~k  392 (508)
                      +..|..++++ + .+.+..+.-.++-++.++.....+.+.+.-..++. ++....+...+..+--+++++.|+..++..+
T Consensus       105 l~~l~kil~W-P-~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~  182 (304)
T 3ebb_A          105 LQILWKAINC-P-EDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQ  182 (304)
T ss_dssp             HHHHHHHHTS-C-TTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHH
T ss_pred             HHHHHHHHcC-C-HHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhH
Confidence            3445555432 2 12233333434333444444444433333233442 2222111223456778899999999898888


Q ss_pred             HHHHhCCcHHHHHHHHhcc--CCCHHHHHHHHHHHHHHhcCChhh--HHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHH
Q 010533          393 SAIIENGGMDKLIVVSARF--SDDASVLQEVMSIITVLSLRSPEN--AARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFM  468 (508)
Q Consensus       393 ~~Iv~~Ggl~~Lv~lL~~~--~~~~~v~e~a~~aL~~La~~~~~~--~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~a  468 (508)
                      ..+...  ...+++.+...  ..+..++-.+...+.|++......  ....  .-....+.+++.. ..+.+....+..|
T Consensus       183 ~~l~~~--~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~--~~ll~~l~~il~~-~~d~EalyR~LvA  257 (304)
T 3ebb_A          183 KLMMSQ--RESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGK--AQCLSLISTILEV-VQDLEATFRLLVA  257 (304)
T ss_dssp             HHHHHT--HHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHH--HHHHHHHHHHHTT-CCCHHHHHHHHHH
T ss_pred             HHHHHH--HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHH--HHHHHHHHHHHhc-cCCHHHHHHHHHH
Confidence            887753  34455544321  357889999999999998632110  0010  0133444455543 4567777888999


Q ss_pred             HHHhhhcCccchH
Q 010533          469 IRNLVARNPENSF  481 (508)
Q Consensus       469 L~nL~~~~~e~~~  481 (508)
                      |.+++...++..+
T Consensus       258 LGtL~~~~~~~~~  270 (304)
T 3ebb_A          258 LGTLISDDSNAVQ  270 (304)
T ss_dssp             HHHHHTTCHHHHH
T ss_pred             HHHHHhCChhHHH
Confidence            9999976555443

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=84.29  E-value=6.3  Score=45.26  Aligned_cols=144  Identities=10%  Similarity=-0.034  Sum_probs=78.8

Q ss_pred             ChhHHHHHHHHHHHhhcC--hhhHhHHhhcCCHHHHHHHHhccCCC-CcHHHHHHHHHHHHHhhCCc-hhHHHHHhCCcH
Q 010533          326 SSPSLISASIALKAVAVN--DEICKSVAENGGIDALLRCIDDSGLQ-GNKTVARICCSLLSKLAGSD-SNKSAIIENGGM  401 (508)
Q Consensus       326 d~~~~~~a~~aL~~La~~--~e~~~~i~e~Ggi~~Lv~lL~~~~~~-~~~~v~~~al~aL~~La~~~-~~k~~Iv~~Ggl  401 (508)
                      +=..++.+|++++.++..  ++....++- ..++.|++++...... ....+...+|++|+.++..- .+...+-  ..+
T Consensus       466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~-~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~--~vl  542 (1023)
T 4hat_C          466 SWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVI  542 (1023)
T ss_dssp             CHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH--HHH
T ss_pred             CHHHHHHHHHHHHHHHcCCCchhHHHHHH-HHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH--HHH
Confidence            345788999999999863  221222221 2467888888642111 11234457789998876421 1111110  123


Q ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHh------cCcHHHHHHHHHc--CCCcHHHHHHHHHHHHHhh
Q 010533          402 DKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAME------AGSGDLAIQAMLK--FPNAQQLQRSSCFMIRNLV  473 (508)
Q Consensus       402 ~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~------~G~i~~Lv~~L~~--h~~~~~vq~~A~~aL~nL~  473 (508)
                      ..|++.|.  .+++.+++.||+++.+||.   +++..++.      ...++.+++.+..  ..-...-......+|..++
T Consensus       543 ~~L~~~l~--~~~~~v~~~A~~al~~l~~---~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi  617 (1023)
T 4hat_C          543 LKLFEFMH--ETHEGVQDMACDTFIKIVQ---KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII  617 (1023)
T ss_dssp             HHHHHHTT--CSCHHHHHHHHHHHHHHHH---HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhh--cCCHHHHHHHHHHHHHHHH---HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            33444443  4568999999999999995   34444542      1234444443221  1123343456666777777


Q ss_pred             hcCc
Q 010533          474 ARNP  477 (508)
Q Consensus       474 ~~~~  477 (508)
                      ...|
T Consensus       618 ~~~~  621 (1023)
T 4hat_C          618 SEER  621 (1023)
T ss_dssp             TTCC
T ss_pred             HhCC
Confidence            6433

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=83.34  E-value=37  Score=33.51  Aligned_cols=204  Identities=10%  Similarity=0.079  Sum_probs=133.6

Q ss_pred             HHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHH
Q 010533          255 ESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISAS  334 (508)
Q Consensus       255 ~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~  334 (508)
                      +.+...+.+..|+..|..-+=+..+.++....++.....     +.....+..+..  --+.|..++....++++--...
T Consensus        72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~-----~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G  144 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQI-----GTRTPTVEYICT--QQNILFMLLKGYESPEIALNCG  144 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCB-----TTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHH
T ss_pred             HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhccc-----CCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHH
Confidence            344556888888888876555777877777777765431     111223344543  2333333344332344433443


Q ss_pred             HHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHh-hCCchhHHHHHhCC---cHHHHHHHHhc
Q 010533          335 IALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKL-AGSDSNKSAIIENG---GMDKLIVVSAR  410 (508)
Q Consensus       335 ~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~L-a~~~~~k~~Iv~~G---gl~~Lv~lL~~  410 (508)
                      ..|+.....+..++.|...+.+..+.+.++.    ++.+|...|+..++.| ..+...........   .....-.+|. 
T Consensus       145 ~mLRecir~e~la~~iL~~~~f~~fF~yv~~----~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~-  219 (341)
T 1upk_A          145 IMLRECIRHEPLAKIILWSEQFYDFFRYVEM----STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLH-  219 (341)
T ss_dssp             HHHHHHHTSHHHHHHHHHSGGGGHHHHHTTC----SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHhHHHHHHHhccHHHHHHHHHhcC----CCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhc-
Confidence            4455566677777888888776666665553    4689999999999997 45665555555544   3566777887 


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc----CcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhh
Q 010533          411 FSDDASVLQEVMSIITVLSLRSPENAARAMEA----GSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA  474 (508)
Q Consensus       411 ~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~----G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~  474 (508)
                       +++--.+++++-.|..|-+ ++.|...+...    .-+..++.+|+.  .+..+|-+|-....-.++
T Consensus       220 -S~NYVTkRQSlKLLgelLl-dr~N~~vM~~Yis~~~nLkl~M~LL~d--~sk~Iq~EAFhVFKvFVA  283 (341)
T 1upk_A          220 -SENYVTKRQSLKLLGELLL-DRHNFTIMTKYISKPENLKLMMNLLRD--KSRNIQFEAFHVFKVFVA  283 (341)
T ss_dssp             -CSSHHHHHHHHHHHHHHHH-SGGGHHHHHHHTTCHHHHHHHHHHTTC--SCHHHHHHHHHHHHHHHH
T ss_pred             -CCcchhHHHHHHHHHHHHh-CchHHHHHHHHhCCHHHHHHHHHHhcC--chhchhhhhhhheeeeee
Confidence             7888999999999999986 66776655542    235667777754  457889999888777776

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=80.83  E-value=32  Score=34.64  Aligned_cols=152  Identities=14%  Similarity=0.139  Sum_probs=90.1

Q ss_pred             hHHHhcCChHHHHHHHhcC---------CCCHHHHHHHHHHHHHhhcCChhhHHHHHHc-CcHHHHHHHHhcCChHHHHH
Q 010533          211 ETFRTGGGPKLLVNILIDG---------NEDPEILNSGFAVVAASATGNEVVKESYMEL-KIDELILEILSRQRNDSIQS  280 (508)
Q Consensus       211 ~~i~~~ggi~~Lv~lL~~~---------~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~-G~i~~Lv~lL~~~~~~~~~~  280 (508)
                      ..|. .+|+..|+.+|.+.         ..+...+..+++||..++ .+......++.. +++..|...|.+....+...
T Consensus        42 ~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm-N~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~  119 (386)
T 2bnx_A           42 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAVPNMMID  119 (386)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT-SSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHH
T ss_pred             HHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-CCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHH
Confidence            3453 67888888888532         114677888999999885 445556666654 68888888887655566666


Q ss_pred             HHHHHHHhcCCCcc---hhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc-C-hh------hHhH
Q 010533          281 LYDAIRVLLTPDDD---QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-N-DE------ICKS  349 (508)
Q Consensus       281 A~~aL~~L~~~dd~---r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~-~-~e------~~~~  349 (508)
                      +...|..+|...+.   ....=.+.++.....+..-..+||+.++.+.+.+.. .+|..+-|... . ++      ....
T Consensus       120 vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~-~a~m~lIN~lv~~~~dl~~R~~LR~E  198 (386)
T 2bnx_A          120 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALK-VGCLQLINALITPAEELDFRVHIRSE  198 (386)
T ss_dssp             HHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHH-HHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHH-HHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence            77778878865531   111112333333333445678899988765444443 34444444322 2 21      2334


Q ss_pred             HhhcCCHHHHHHHHhcc
Q 010533          350 VAENGGIDALLRCIDDS  366 (508)
Q Consensus       350 i~e~Ggi~~Lv~lL~~~  366 (508)
                      +... |+..++.-|+..
T Consensus       199 f~~~-GL~~il~~Lr~~  214 (386)
T 2bnx_A          199 LMRL-GLHQVLQELREI  214 (386)
T ss_dssp             HHHT-THHHHHHHHTTC
T ss_pred             HHHC-ChHHHHHHHhcc
Confidence            4444 566667777753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	508
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	7e-05
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-04
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	4e-04
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-04
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	0.002

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 7e-05
 Identities = 25/172 (14%), Positives = 57/172 (33%), Gaps = 22/172 (12%)

Query: 325 LSSPS---LISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCS 380
           LSS         +  ++     ++   + V + GGI  L+  +       N+ V +    
Sbjct: 11  LSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP----NQNVQQAAAG 66

Query: 381 LLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARA 439
            L  L   S +NK       G+ + + +  R   +A + +++  ++  LS          
Sbjct: 67  ALRNLVFRSTTNKLETRRQNGIREAVSLLRRT-GNAEIQKQLTGLLWNLSSTDELKEELI 125

Query: 440 MEA------------GSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPEN 479
            +A                     M +     ++  ++   +RNL + +   
Sbjct: 126 ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGR 177

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 40/354 (11%), Positives = 100/354 (28%), Gaps = 31/354 (8%)

Query: 153 LIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTET 212
           L  L   +    N     +  G+    S+  +       +       +  L    +  E 
Sbjct: 68  LRNLVFRST--TNKLETRRQNGIREAVSLLRRTGN--AEIQKQLTGLLWNLSSTDELKEE 123

Query: 213 FRTGGGPKLLVNILIDG-------------NEDPEILNSGFAVVAASATGNEVVKESYME 259
                 P L   ++I                 DPE+  +    +   ++ +   +     
Sbjct: 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNY 183

Query: 260 LKIDELILEILSRQRNDSIQSLYDAIRVL-----LTPDDDQVVASQVYGYARRFAKIGIA 314
             + + ++  +      S          +     L+   D  V ++              
Sbjct: 184 SGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTE 243

Query: 315 RALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDS---GLQGN 371
           ++               +    L     N +    +  +  I   L  +  S        
Sbjct: 244 KSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEA 303

Query: 372 KTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLR 431
              A    +    L  S  ++   ++  G+ ++       S ++ V++   S+++ +S R
Sbjct: 304 CAGALQNLTASKGLMSSGMSQLIGLKEKGLPQI--ARLLQSGNSDVVRSGASLLSNMS-R 360

Query: 432 SPENAARAMEAGSGDL---AIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFC 482
            P            ++            N++ +  S+C+ +RNL+A  P+ +  
Sbjct: 361 HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQ 414

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 4e-04
 Identities = 24/310 (7%), Positives = 79/310 (25%), Gaps = 18/310 (5%)

Query: 176 ELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGP-KLLVNILIDGNEDPE 234
               +           V  +    +  L       +T R   G    L+  + +      
Sbjct: 143 WCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASR 202

Query: 235 ILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLT---P 291
             +                 ++ +  +  +L     +     S    +      +     
Sbjct: 203 CDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNY 262

Query: 292 DDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKS-- 349
           D            +         R  ++ +       +L + + AL+ +  +  +  S  
Sbjct: 263 DCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGM 322

Query: 350 ----VAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGG---MD 402
                 +  G+  + R +        ++ A +  ++    +        +          
Sbjct: 323 SQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNM----SRHPLLHRVMGNQVFPEVTR 378

Query: 403 KLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQ 462
            L   +   S+   +L      +  L    P+ A +   +      I  + +   + +  
Sbjct: 379 LLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSS-MLNNIINLCRSSASPKAA 437

Query: 463 RSSCFMIRNL 472
            ++  ++ ++
Sbjct: 438 EAARLLLSDM 447

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 5e-04
 Identities = 18/112 (16%), Positives = 36/112 (32%), Gaps = 9/112 (8%)

Query: 295 QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASI-ALKAVAVNDEICKSVAEN 353
           Q++        RR +  G  +  V     G+    ++     AL  +A +      +   
Sbjct: 404 QLLVRAHQDTQRRTSMGGTQQQFV----EGVRMEEIVEGCTGALHILARDVHNRIVIRGL 459

Query: 354 GGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLI 405
             I   ++ +        + + R+   +L +LA       AI   G    L 
Sbjct: 460 NTIPLFVQLLYS----PIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLT 507

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	508
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.97
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.96
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.94
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.94
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.8
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.79
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.3
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.25
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.2
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.1
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.01
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	97.98
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	97.96
d1b3ua_	588	Constant regulatory domain of protein phosphatase	97.95
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.91
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	97.89
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.8
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.67
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.66
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.46
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.36
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.28
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	96.99
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	96.98
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.94
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	96.75
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	95.82
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	95.69
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	91.29
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	88.62
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	88.36
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	87.99

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.6e-28  Score=254.05  Aligned_cols=335  Identities=12%  Similarity=0.126  Sum_probs=283.2

Q ss_pred             HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHh
Q 010533          124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL  203 (508)
Q Consensus       124 l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l  203 (508)
                      +..+...+.+.       |.+.+..++..++++...+ ..+....+.++|++|.|+.+|+..  .+..++..|+++|+++
T Consensus        78 l~~~~~~~~s~-------~~~~~~~a~~~~r~~ls~~-~~~~i~~ii~~g~i~~Lv~~l~~~--~~~~iq~~a~~~L~ni  147 (503)
T d1wa5b_          78 LPQMTQQLNSD-------DMQEQLSATVKFRQILSRE-HRPPIDVVIQAGVVPRLVEFMREN--QPEMLQLEAAWALTNI  147 (503)
T ss_dssp             HHHHHHHHSCS-------SHHHHHHHHHHHHHHTCCS-SSCSHHHHHHTTCHHHHHHTTSTT--SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCC-------CHHHHHHHHHHHHHHHhcC-CCchHHHHHHCCChHHHHHHHcCC--CCHHHHHHHHHHHHHH
Confidence            56666666665       8888999999999987642 444557889999999999999864  4678999999999999


Q ss_pred             hcCC-cchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHH
Q 010533          204 VHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLY  282 (508)
Q Consensus       204 ~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~  282 (508)
                      +.+. +.+..+.+.|+++.++.+|.+  ++.+++..++|+|++++..++.+|..+++.|+++.|+.++......++++++
T Consensus       148 ~~~~~~~~~~~~~~g~i~~l~~lL~s--~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~  225 (503)
T d1wa5b_         148 ASGTSAQTKVVVDADAVPLFIQLLYT--GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTAT  225 (503)
T ss_dssp             TTSCHHHHHHHHHTTCHHHHHHHHHH--CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHH
T ss_pred             HcCCHHHHHHHHhCCChHHHHHHhcC--CChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHH
Confidence            8655 334677889999999999984  5789999999999999999999999999999999999999987778999999


Q ss_pred             HHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc-ChhhHhHHhhcCCHHHHHH
Q 010533          283 DAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLR  361 (508)
Q Consensus       283 ~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv~  361 (508)
                      |+|.+|+..++....         .....++++.|+.++.+ .|.+++.++|++|.+|+. .++....+.+.|+++.++.
T Consensus       226 ~~l~nl~~~~~~~~~---------~~~~~~~l~~l~~~l~~-~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~  295 (503)
T d1wa5b_         226 WTLSNLCRGKKPQPD---------WSVVSQALPTLAKLIYS-MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVE  295 (503)
T ss_dssp             HHHHHHHCCSSSCCC---------HHHHGGGHHHHHHHTTC-CCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHhcCCccchH---------HHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhh
Confidence            999999976654322         12245889999999886 478899999999999997 4556678999999999999


Q ss_pred             HHhccCCCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 010533          362 CIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAM  440 (508)
Q Consensus       362 lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~  440 (508)
                      ++...    +..+...++.+|++++. ++.....+++.|+++.|..++.  +.++.+++.++++|+|++.++++....++
T Consensus       296 ll~~~----~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~--~~~~~i~~~~~~~l~nl~~~~~~~~~~i~  369 (503)
T d1wa5b_         296 LLSHE----STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS--SPKENIKKEACWTISNITAGNTEQIQAVI  369 (503)
T ss_dssp             GGGCS----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             cccCC----chhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhc--CCCHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence            99853    34899999999999985 4566778889999999999998  67899999999999999999999999999


Q ss_pred             hcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhc---CccchHHHHhccc
Q 010533          441 EAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR---NPENSFCSVMVSR  488 (508)
Q Consensus       441 ~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~---~~e~~~~~~~~g~  488 (508)
                      +.|+++.+++.|..  .+..++++|+|+|.|++..   .++....+++.|.
T Consensus       370 ~~~~l~~li~~l~~--~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~  418 (503)
T d1wa5b_         370 DANLIPPLVKLLEV--AEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGC  418 (503)
T ss_dssp             HTTCHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTC
T ss_pred             HccccchhHHhccc--CChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCc
Confidence            99999999999975  4578999999999999864   3566677777763

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.1e-29  Score=264.58  Aligned_cols=325  Identities=16%  Similarity=0.160  Sum_probs=281.5

Q ss_pred             HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHH-CCcHHHHHHHHhcccCCCHHHHHHHHHHH
Q 010533          122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATK-NGGVELVCSICYKMRCGSKRVLDSCLKTM  200 (508)
Q Consensus       122 ~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~-~Gavp~Lv~lL~~~~~~~~~~~~~al~aL  200 (508)
                      .++..|...+.+.       |.+....|+..|.++++.   ...|..+.. .|+||.|+.+|++.  .+.+++..|+.+|
T Consensus        17 ~aip~L~~lL~~~-------~~~v~~~A~~~l~~l~~~---~~~~~~~~~~~~~v~~l~~~L~~~--~~~~~~~~a~~~L   84 (529)
T d1jdha_          17 RAIPELTKLLNDE-------DQVVVNKAAVMVHQLSKK---EASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTAGTL   84 (529)
T ss_dssp             CHHHHHHHHHTCS-------CHHHHHHHHHHHHHHHTS---HHHHHHHHTCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCC-------CHHHHHHHHHHHHHHHhc---cHHHHHHHHhhhHHHHHHHHHcCC--CCHHHHHHHHHHH
Confidence            4688888888765       788999999999999974   555555555 57899999999875  4678888999999


Q ss_pred             HHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHH
Q 010533          201 ALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQS  280 (508)
Q Consensus       201 a~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~  280 (508)
                      ..++.+.+.+..+++.||++.|+++|.  +++.+++..++++|+++|..++..|+.+.+.|+++.|+.+|++++.+++..
T Consensus        85 ~~l~~~~~~~~~i~~~g~i~~Li~lL~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~  162 (529)
T d1jdha_          85 HNLSHHREGLLAIFKSGGIPALVKMLG--SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAI  162 (529)
T ss_dssp             HHHTTSHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHH
T ss_pred             HHHhCCchhHHHHHHCCCHHHHHHHhC--CCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHH
Confidence            999987778889999999999999997  468999999999999999998989999999999999999999888889999


Q ss_pred             HHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHH
Q 010533          281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALL  360 (508)
Q Consensus       281 A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv  360 (508)
                      ++++|.+|+..++         ++...+.+.|++++|+.+|+.+.+..++..+++++++++.++++...+++.|+++.|+
T Consensus       163 a~~~L~~l~~~~~---------~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~  233 (529)
T d1jdha_         163 TTDCLQILAYGNQ---------ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG  233 (529)
T ss_dssp             HHHHHHHHHTTCH---------HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHhhhhh---------HHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHH
Confidence            9999999997653         2344566889999999999987667788999999999999999999999999999999


Q ss_pred             HHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 010533          361 RCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAM  440 (508)
Q Consensus       361 ~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~  440 (508)
                      .++.+.    +.+++..++++|.+++......  +...|+++.|++++.  ++++.+++.++++|.+|+..+++++..+.
T Consensus       234 ~ll~~~----~~~~~~~a~~~l~~ls~~~~~~--~~~~~~i~~Lv~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~i~  305 (529)
T d1jdha_         234 LHLTDP----SQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLG--SDDINVVTCAAGILSNLTCNNYKNKMMVC  305 (529)
T ss_dssp             TTTTSS----CHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHhccc----chhhhhhhhhHHHhccccccch--hhhhhcchhhhhhcc--cccHHHHHHHHHHHHhhccchhHHHHHHH
Confidence            999753    3489999999999998544332  223478999999998  77899999999999999999999999999


Q ss_pred             hcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCc
Q 010533          441 EAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNP  477 (508)
Q Consensus       441 ~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~  477 (508)
                      +.|+++.+++++...+..+.+++.|+++|+|++...+
T Consensus       306 ~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~  342 (529)
T d1jdha_         306 QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ  342 (529)
T ss_dssp             HTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSST
T ss_pred             HhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhh
Confidence            9999999999998777778999999999999986543

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=2.7e-27  Score=243.29  Aligned_cols=336  Identities=12%  Similarity=0.133  Sum_probs=280.9

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHH
Q 010533          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (508)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~  202 (508)
                      +++.+...+.+.       +.+.+.+|+..|+++.+.. ....+..+.+.|++|.|+++|++.  ++.+++..++++|.+
T Consensus        14 ~i~~lv~~l~s~-------~~~~~~~a~~~l~~l~s~~-~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~v~~~a~~~L~~   83 (434)
T d1q1sc_          14 SVEDIVKGINSN-------NLESQLQATQAARKLLSRE-KQPPIDNIIRAGLIPKFVSFLGKT--DCSPIQFESAWALTN   83 (434)
T ss_dssp             CHHHHHHHHTSS-------CHHHHHHHHHHHHHHHHSS-SCCCHHHHHHTTCHHHHHHHTTCG--GGHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHcCC-------CHHHHHHHHHHHHHHhcCC-CCchHHHHHHCCCHHHHHHHHccC--CCHHHHHHHHHHHHH
Confidence            477788887776       8999999999999986541 222356788999999999999765  367889999999999


Q ss_pred             hhcCC-cchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-----H
Q 010533          203 LVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-----D  276 (508)
Q Consensus       203 l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-----~  276 (508)
                      ++.+. +.+..+++.|+++.++.+|.+  ++.++++.++++|++++..++..|..+.+.|+++.|+.++..+..     .
T Consensus        84 la~~~~~~~~~i~~~~~i~~l~~~L~~--~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~  161 (434)
T d1q1sc_          84 IASGTSEQTKAVVDGGAIPAFISLLAS--PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG  161 (434)
T ss_dssp             HHTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHH
T ss_pred             HhcCChhhhhHhhhccchhhhhhcccc--CCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHH
Confidence            97654 456788999999999999974  579999999999999999899999999999999999999987643     5


Q ss_pred             HHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcC-hhhHhHHhhcCC
Q 010533          277 SIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DEICKSVAENGG  355 (508)
Q Consensus       277 ~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~-~e~~~~i~e~Gg  355 (508)
                      .++.++|++.+++........         .....++++.|+.++.+ .+++++.+++++|.+|+.. ++....+.+.|+
T Consensus       162 ~~~~~~~~l~~~~~~~~~~~~---------~~~~~~~l~~l~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~  231 (434)
T d1q1sc_         162 YLRNLTWTLSNLCRNKNPAPP---------LDAVEQILPTLVRLLHH-NDPEVLADSCWAISYLTDGPNERIEMVVKKGV  231 (434)
T ss_dssp             HHHHHHHHHHHHTCCCTTCCC---------HHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHhhcccccch---------hhhhhhHHHHHHHHHhc-cccchhhhHHhhhcccchhhhhhHHHHhhccc
Confidence            567789999999876543221         11234678999998876 4688999999999999985 466677889999


Q ss_pred             HHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChh
Q 010533          356 IDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPE  434 (508)
Q Consensus       356 i~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~  434 (508)
                      ++.|+.++...    +..++..++.+|.+++. ++..+..+++.|+++.|+.+|.  +.++.+++.++++|.+|+..+++
T Consensus       232 ~~~Lv~ll~~~----~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~--~~~~~v~~~a~~~L~~l~~~~~~  305 (434)
T d1q1sc_         232 VPQLVKLLGAT----ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT--NPKTNIQKEATWTMSNITAGRQD  305 (434)
T ss_dssp             HHHHHHHHTCS----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTT--CSSHHHHHHHHHHHHHHTTSCHH
T ss_pred             chhcccccccc----hhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhc--ccchhhhHHHHHHHhhhccccch
Confidence            99999999753    35899999999999976 5577888999999999999998  67899999999999999988888


Q ss_pred             hHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhc-CccchHHHHhccc
Q 010533          435 NAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR-NPENSFCSVMVSR  488 (508)
Q Consensus       435 ~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~-~~e~~~~~~~~g~  488 (508)
                      ....+.+.|+++.+++++..  .+..++..|+|+|.|++.. +++....+++.|.
T Consensus       306 ~~~~i~~~~~i~~li~~l~~--~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~  358 (434)
T d1q1sc_         306 QIQQVVNHGLVPFLVGVLSK--ADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI  358 (434)
T ss_dssp             HHHHHHHTTCHHHHHHHHHS--SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTC
T ss_pred             hHHHHhhhhhHHHHHHHHhc--cChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCc
Confidence            89999999999999999964  4688999999999999864 5777788888774

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.8e-26  Score=244.72  Aligned_cols=334  Identities=17%  Similarity=0.175  Sum_probs=280.4

Q ss_pred             HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHH
Q 010533          122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA  201 (508)
Q Consensus       122 ~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa  201 (508)
                      ..+..|...+.+.      .+.+....++..|..+|.   +++++..+.+.|++|.|+.+|++   ++.+++..|+++|.
T Consensus        59 ~~v~~l~~~L~~~------~~~~~~~~a~~~L~~l~~---~~~~~~~i~~~g~i~~Li~lL~~---~~~~v~~~a~~aL~  126 (529)
T d1jdha_          59 QMVSAIVRTMQNT------NDVETARCTAGTLHNLSH---HREGLLAIFKSGGIPALVKMLGS---PVDSVLFYAITTLH  126 (529)
T ss_dssp             HHHHHHHHHHHHC------CCHHHHHHHHHHHHHHTT---SHHHHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCC------CCHHHHHHHHHHHHHHhC---CchhHHHHHHCCCHHHHHHHhCC---CCHHHHHHHHHHHH
Confidence            3567777777553      156778889999999986   68899999999999999999987   47899999999999


Q ss_pred             HhhcCCc-chhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-HHHH
Q 010533          202 LLVHDVQ-STETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQ  279 (508)
Q Consensus       202 ~l~~~~~-~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~  279 (508)
                      +++.+.+ .+..+.+.|+++.|+++|.  +++.+++..++++|.+++..++.++..+.+.|+++.|+.+|+.++. .++.
T Consensus       127 ~l~~~~~~~~~~~~~~g~i~~Lv~lL~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~  204 (529)
T d1jdha_         127 NLLLHQEGAKMAVRLAGGLQKMVALLN--KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW  204 (529)
T ss_dssp             HHHHHCTTHHHHHHHHTHHHHHHHGGG--CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHH
T ss_pred             HhhcccchhhhHHHhcCCchHHHHHHH--ccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHH
Confidence            9886654 4577889999999999997  4579999999999999998888899999999999999999987654 6778


Q ss_pred             HHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHH
Q 010533          280 SLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDAL  359 (508)
Q Consensus       280 ~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~L  359 (508)
                      .+++++.+++.++++          .+.+++.|++++|+.++.+. +..+...++++|.+++....  ......|+++.|
T Consensus       205 ~~~~~l~~ls~~~~~----------~~~~~~~g~~~~L~~ll~~~-~~~~~~~a~~~l~~ls~~~~--~~~~~~~~i~~L  271 (529)
T d1jdha_         205 TTSRVLKVLSVCSSN----------KPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTLRNLSDAAT--KQEGMEGLLGTL  271 (529)
T ss_dssp             HHHHHHHHHTTSTTH----------HHHHHHTTHHHHHHTTTTSS-CHHHHHHHHHHHHHHHTTCT--TCSCCHHHHHHH
T ss_pred             HHHHHHhhhhccccc----------cchhhhhhhhhhHHHHhccc-chhhhhhhhhHHHhcccccc--chhhhhhcchhh
Confidence            899999999977654          34677889999999999864 57788999999999975432  334456889999


Q ss_pred             HHHHhccCCCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChh---h
Q 010533          360 LRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPE---N  435 (508)
Q Consensus       360 v~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~---~  435 (508)
                      ++++...    +..++..++.+|++|+. +++++..+.+.|+++.|+.++...++.+.+++.++++|.+|+.+.+.   .
T Consensus       272 v~ll~~~----~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~  347 (529)
T d1jdha_         272 VQLLGSD----DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMA  347 (529)
T ss_dssp             HHHTTCS----CHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHH
T ss_pred             hhhcccc----cHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhh
Confidence            9999752    34899999999999974 67899999999999999999976677899999999999999965543   4


Q ss_pred             HHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHhccc
Q 010533          436 AARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMVSR  488 (508)
Q Consensus       436 ~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~g~  488 (508)
                      ...+...|+++.++.+++. +++..+++.++++|+|++. +++++..+.+.|+
T Consensus       348 ~~~i~~~~~l~~L~~ll~~-~~~~~~~~~~~~~l~~l~~-~~~~~~~l~~~g~  398 (529)
T d1jdha_         348 QNAVRLHYGLPVVVKLLHP-PSHWPLIKATVGLIRNLAL-CPANHAPLREQGA  398 (529)
T ss_dssp             HHHHHHTTCHHHHHHTTST-TCCHHHHHHHHHHHHHHTT-SGGGHHHHHHTTH
T ss_pred             hhhHHhcccchhHHHHHhc-cchHHHHHHHHHHHhhcch-hhhhhhhhhhccc
Confidence            5667789999999999965 4556788899999999975 6888888888885

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=1.4e-24  Score=222.80  Aligned_cols=390  Identities=14%  Similarity=0.175  Sum_probs=299.4

Q ss_pred             hccCCchhhhhhhhhh----cccCCCCC-----CCCCCcCCCcccccccCCccCCCCcchhhhhhHHHHHHHHHHHHhhc
Q 010533           10 KHFSNSEQIDFQKQSS----LITLPQPR-----AHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDL   80 (508)
Q Consensus        10 ~~~~~~~~~~~~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isQetfd~~v~eni~~~   80 (508)
                      .-+|++.+.|.++.+.    +|..++||     ..|+||..+.+|++.+++.+|..++   +.++          |+.  
T Consensus        21 ~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~---~~L~----------~la--   85 (434)
T d1q1sc_          21 GINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESA---WALT----------NIA--   85 (434)
T ss_dssp             HHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHH---HHHH----------HHH--
T ss_pred             HHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHH---HHHH----------HHh--
Confidence            3568899999999888    57789998     6799999999998877654443322   1111          111  


Q ss_pred             CCChhHHHHHHHHHHhhccccCCCccccCCCCCCCCCChHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCC
Q 010533           81 GMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGN  160 (508)
Q Consensus        81 ~m~p~eal~~aI~q~~~qgvdLs~i~~~~~~~~~~~~~~v~~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~  160 (508)
                       ....+- +.   .+...|                       ++..|...+.+.       +.+....+++.|.++|.. 
T Consensus        86 -~~~~~~-~~---~i~~~~-----------------------~i~~l~~~L~~~-------~~~~~~~a~~~L~nl~~~-  129 (434)
T d1q1sc_          86 -SGTSEQ-TK---AVVDGG-----------------------AIPAFISLLASP-------HAHISEQAVWALGNIAGD-  129 (434)
T ss_dssp             -TSCHHH-HH---HHHHTT-----------------------HHHHHHHHTTCS-------CHHHHHHHHHHHHHHHTT-
T ss_pred             -cCChhh-hh---Hhhhcc-----------------------chhhhhhccccC-------CHHHHHHHHHHHHHHhcc-
Confidence             101111 11   111222                       366677777665       778888999999999987 


Q ss_pred             CChhhHHHHHHCCcHHHHHHHHhcccCC--CHHHHHHHHHHHHHhhcCCcch-hHHHhcCChHHHHHHHhcCCCCHHHHH
Q 010533          161 EGSVNAAVATKNGGVELVCSICYKMRCG--SKRVLDSCLKTMALLVHDVQST-ETFRTGGGPKLLVNILIDGNEDPEILN  237 (508)
Q Consensus       161 ~~~~~r~~i~~~Gavp~Lv~lL~~~~~~--~~~~~~~al~aLa~l~~~~~~~-~~i~~~ggi~~Lv~lL~~~~~~~~v~~  237 (508)
                       ++..|..+.+.|+++.|+.++......  ....+..+.+.+..++...... ......+.++.++.+|.  .++.++..
T Consensus       130 -~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~--~~~~~~~~  206 (434)
T d1q1sc_         130 -GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH--HNDPEVLA  206 (434)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTT--CSCHHHHH
T ss_pred             -chHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHh--ccccchhh
Confidence             889999999999999999999765321  2244556677777776544322 33445678889999886  45789999


Q ss_pred             HHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHH
Q 010533          238 SGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARAL  317 (508)
Q Consensus       238 ~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~L  317 (508)
                      .++++|.+++..++..+..+.+.|+++.|++++++.+..++..++++|.+++..++         +....+.+.|+++.|
T Consensus       207 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~---------~~~~~~~~~~~~~~l  277 (434)
T d1q1sc_         207 DSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD---------EQTQKVIDAGALAVF  277 (434)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH---------HHHHHHHHTTGGGGH
T ss_pred             hHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhh---------HHHHHHHhccccchH
Confidence            99999999988777788888899999999999998877899999999999997653         234567789999999


Q ss_pred             HHHHhcCCChhHHHHHHHHHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh--CCchhHHH
Q 010533          318 VHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA--GSDSNKSA  394 (508)
Q Consensus       318 v~lL~~~~d~~~~~~a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La--~~~~~k~~  394 (508)
                      +.+|++. +++++..++++|.+|+. ..+....+.+.|+++.++.++.+.    +.+++..++++|.+++  ++++....
T Consensus       278 ~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~----~~~v~~~a~~~l~nl~~~~~~~~~~~  352 (434)
T d1q1sc_         278 PSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA----DFKTQKEAAWAITNYTSGGTVEQIVY  352 (434)
T ss_dssp             HHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSS----CHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHhhccc-chhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhcc----ChHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            9999864 67899999999999997 556677888999999999999863    3489999999999997  35567788


Q ss_pred             HHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhc-----C-ChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHH
Q 010533          395 IIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL-----R-SPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFM  468 (508)
Q Consensus       395 Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~-----~-~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~a  468 (508)
                      +++.|+++.|+++|.  .+++.++..++.+|.+|..     . ++..+..+.+.|+++.| +-|..| +++.+++.|...
T Consensus       353 l~~~~~i~~L~~ll~--~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i-~~L~~~-~n~~i~~~a~~i  428 (434)
T d1q1sc_         353 LVHCGIIEPLMNLLS--AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKI-EALQRH-ENESVYKASLNL  428 (434)
T ss_dssp             HHHTTCHHHHHHHTT--SSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHH-HHHHTC-SSHHHHHHHHHH
T ss_pred             HHHCCcHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHH-HHHHcC-CCHHHHHHHHHH
Confidence            999999999999998  7789999999999999863     1 22345667788999976 556656 568888888887


Q ss_pred             HHH
Q 010533          469 IRN  471 (508)
Q Consensus       469 L~n  471 (508)
                      |-+
T Consensus       429 l~~  431 (434)
T d1q1sc_         429 IEK  431 (434)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=8.4e-24  Score=222.75  Aligned_cols=320  Identities=13%  Similarity=0.144  Sum_probs=266.7

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHH
Q 010533          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (508)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~  202 (508)
                      .+..|...+.+.      .+.+.+..+++.|.++|..  ++.....+.+.|++|.|+.+|.+   ++.++...|+++|.+
T Consensus       120 ~i~~Lv~~l~~~------~~~~iq~~a~~~L~ni~~~--~~~~~~~~~~~g~i~~l~~lL~s---~~~~i~~~a~~~L~n  188 (503)
T d1wa5b_         120 VVPRLVEFMREN------QPEMLQLEAAWALTNIASG--TSAQTKVVVDADAVPLFIQLLYT---GSVEVKEQAIWALGN  188 (503)
T ss_dssp             CHHHHHHTTSTT------SCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTCHHHHHHHHHH---CCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHcCC------CCHHHHHHHHHHHHHHHcC--CHHHHHHHHhCCChHHHHHHhcC---CChhHHHHHHHHHHH
Confidence            366777776543      1566778899999999987  78888899999999999999998   478899999999999


Q ss_pred             hhcCC-cchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHH
Q 010533          203 LVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSL  281 (508)
Q Consensus       203 l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A  281 (508)
                      ++.+. +.+..+++.|+++.++.++..  .+..++..++|+|.++|...+.........|+++.|+.++.+.+.+++..+
T Consensus       189 ia~~~~~~r~~l~~~~~~~~L~~ll~~--~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~  266 (503)
T d1wa5b_         189 VAGDSTDYRDYVLQCNAMEPILGLFNS--NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDA  266 (503)
T ss_dssp             HHTTCHHHHHHHHHTTCHHHHHHGGGS--CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHH
T ss_pred             HhhhhHHHHHHHHhhcccccchhhccc--CCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            98755 556788899999999999974  578899999999999987655444445567899999999998888899999


Q ss_pred             HHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcC-hhhHhHHhhcCCHHHHH
Q 010533          282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DEICKSVAENGGIDALL  360 (508)
Q Consensus       282 ~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~-~e~~~~i~e~Ggi~~Lv  360 (508)
                      ||+|.+|+..++         +....+.+.|+++.|+.++.+. +..+...++.+|++++.. ++....+.+.|+++.|.
T Consensus       267 ~~~l~~l~~~~~---------~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~  336 (503)
T d1wa5b_         267 CWAISYLSDGPQ---------EAIQAVIDVRIPKRLVELLSHE-STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALR  336 (503)
T ss_dssp             HHHHHHHHSSCH---------HHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHhhccCCc---------hhhhhhhhhhhhhhhhhcccCC-chhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHH
Confidence            999999986543         2345567889999999999864 677889999999999874 55667788999999999


Q ss_pred             HHHhccCCCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcC---ChhhH
Q 010533          361 RCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLR---SPENA  436 (508)
Q Consensus       361 ~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~---~~~~~  436 (508)
                      .++...    +..++..++++|++++. ++.....+++.|+++.++..|.  ..+..++..++++|.+++..   +++..
T Consensus       337 ~ll~~~----~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~--~~~~~v~~~a~~~l~nl~~~~~~~~~~~  410 (503)
T d1wa5b_         337 LLLSSP----KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE--VAEYKTKKEACWAISNASSGGLQRPDII  410 (503)
T ss_dssp             HHTTCS----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHTTTCTHHH
T ss_pred             HHhcCC----CHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcc--cCChhHHHHHHHHHHHHHhcccccHHHH
Confidence            998753    34899999999999964 6678888999999999999998  66789999999999999853   35667


Q ss_pred             HHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhh
Q 010533          437 ARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV  473 (508)
Q Consensus       437 ~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~  473 (508)
                      ..+++.|+++.++.+|..  .+..+...+..+|.++.
T Consensus       411 ~~l~~~~~l~~l~~~L~~--~d~~~~~~~L~~l~~ll  445 (503)
T d1wa5b_         411 RYLVSQGCIKPLCDLLEI--ADNRIIEVTLDALENIL  445 (503)
T ss_dssp             HHHHHTTCHHHHHHHTTT--CCHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCcHHHHHHHhcC--CCHHHHHHHHHHHHHHH
Confidence            888999999999999964  46777788888888875

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.7e-25  Score=222.82  Aligned_cols=336  Identities=12%  Similarity=0.084  Sum_probs=256.3

Q ss_pred             HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHh
Q 010533          124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL  203 (508)
Q Consensus       124 l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l  203 (508)
                      +..|...|.+.       +++.+..+++.|.++|..  ++++|..+.+.|+||.|+++|++   ++.+++..|+++|..+
T Consensus         4 ip~lv~~L~~~-------~~~~~~~a~~~l~~l~~~--~~~~~~~i~~~g~i~~Lv~lL~~---~~~~v~~~a~~aL~~L   71 (457)
T d1xm9a1           4 IPKAVQYLSSQ-------DEKYQAIGAYYIQHTCFQ--DESAKQQVYQLGGICKLVDLLRS---PNQNVQQAAAGALRNL   71 (457)
T ss_dssp             HHHHHHHHHSS-------CTHHHHHHHHHHHHHTSS--CSSHHHHHHHTTHHHHHHHHTTS---SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCC-------CHHHHHHHHHHHHHHHcC--CHHHHHHHHHCCcHHHHHHHHCC---CCHHHHHHHHHHHHHH
Confidence            55677777776       899999999999999987  89999999999999999999987   4789999999999999


Q ss_pred             hcCC-cchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHh-----------
Q 010533          204 VHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILS-----------  271 (508)
Q Consensus       204 ~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~-----------  271 (508)
                      +.++ +.+..+.+.||++.++.++.. ..+.+++..++++|.+++.. +..+..+...|+ +.++..+.           
T Consensus        72 ~~~~~~~~~~i~~~g~v~~li~~l~~-~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~  148 (457)
T d1xm9a1          72 VFRSTTNKLETRRQNGIREAVSLLRR-TGNAEIQKQLTGLLWNLSST-DELKEELIADAL-PVLADRVIIPFSGWCDGNS  148 (457)
T ss_dssp             HSSCHHHHHHHHHTTCHHHHHHHHTT-CCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHH-HHHHHHTTHHHHTCC----
T ss_pred             HcCCHHHHHHHHHCCChHHHHHHHhc-cCcHHHHHHHHHHHHHHHhh-hhhHHHHHhccc-HHHHHHHHhhhhhhhcchh
Confidence            8544 567889999999999999975 46789999999999999764 445555554443 33333331           


Q ss_pred             -----cCChHHHHHHHHHHHHhcCCCcchhhh---hh-------------------------------------------
Q 010533          272 -----RQRNDSIQSLYDAIRVLLTPDDDQVVA---SQ-------------------------------------------  300 (508)
Q Consensus       272 -----~~~~~~~~~A~~aL~~L~~~dd~r~~~---~~-------------------------------------------  300 (508)
                           ..+..++..++++|..++.+++++...   ++                                           
T Consensus       149 ~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  228 (457)
T d1xm9a1         149 NMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPT  228 (457)
T ss_dssp             -----CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCC
T ss_pred             hhhcccccHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence                 112256677777777776554432210   00                                           


Q ss_pred             -------------------------------------------cchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHH
Q 010533          301 -------------------------------------------VYGYARRFAKIGIARALVHSLHAGLSSPSLISASIAL  337 (508)
Q Consensus       301 -------------------------------------------a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL  337 (508)
                                                                 .......+.+.++++.|+.++....++.+...+++++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l  308 (457)
T d1xm9a1         229 RYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGAL  308 (457)
T ss_dssp             HHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHH
Confidence                                                       0000011112245677777777765667778888899


Q ss_pred             HHhhcChh------hHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhcc
Q 010533          338 KAVAVNDE------ICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARF  411 (508)
Q Consensus       338 ~~La~~~e------~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~  411 (508)
                      .+++....      ....+.+.|+++.|+++|.+.    +.+++..++.+|++|+.+++++..|.+ ++++.++.+|..+
T Consensus       309 ~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~----~~~v~~~a~~~l~~La~~~~~~~~i~~-~~i~~li~~L~~~  383 (457)
T d1xm9a1         309 QNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG----NSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSH  383 (457)
T ss_dssp             HHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS----CHHHHHHHHHHHHHHHTSGGGHHHHHH-HTHHHHHHTTTSC
T ss_pred             HHHhhccccchHHHHHHHHHHcCChHHHHhhhcCc----cHHHHHHHHHHHHHHhhChhHHHHHHH-hhHHHHHHHHhcc
Confidence            88876432      234566789999999999763    348999999999999999999988865 7899999999643


Q ss_pred             C----CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchH
Q 010533          412 S----DDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSF  481 (508)
Q Consensus       412 ~----~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~  481 (508)
                      .    .++.++..+|++|.+|+..++++++.+++.|+++.|+++++.+ +++.+++.|+++|.||.. ++|.|.
T Consensus       384 ~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~-~~~~~~~aA~~~L~~L~~-~~~~~~  455 (457)
T d1xm9a1         384 TGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSS-ASPKAAEAARLLLSDMWS-SKELQG  455 (457)
T ss_dssp             CSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTSS-STTCSS
T ss_pred             ccCcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCC-CCHHHHHHHHHHHHHHHc-CHhhHh
Confidence            2    2367999999999999999999999999999999999999765 457899999999999964 566653

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7.8e-22  Score=199.39  Aligned_cols=296  Identities=14%  Similarity=0.148  Sum_probs=230.3

Q ss_pred             CcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCC-cchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCh
Q 010533          173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE  251 (508)
Q Consensus       173 Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e  251 (508)
                      +.||.||++|++   ++++++..|+.+|.+++.++ +.|..+++.||+|.|+++|+  +++++++..++++|.+++..++
T Consensus         2 ~~ip~lv~~L~~---~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~a~~aL~~L~~~~~   76 (457)
T d1xm9a1           2 LTIPKAVQYLSS---QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR--SPNQNVQQAAAGALRNLVFRST   76 (457)
T ss_dssp             CCHHHHHHHHHS---SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTT--SSCHHHHHHHHHHHHHHHSSCH
T ss_pred             CCHHHHHHHhCC---CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHC--CCCHHHHHHHHHHHHHHHcCCH
Confidence            579999999998   47899999999999998654 56899999999999999997  4689999999999999998999


Q ss_pred             hhHHHHHHcCcHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHH---------
Q 010533          252 VVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSL---------  321 (508)
Q Consensus       252 ~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL---------  321 (508)
                      ++|..+.+.|+++.|+.++.+..+ +++..++++|.+|+..+..+..          +.. .+++.++..+         
T Consensus        77 ~~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~----------~~~-~~~~~l~~~~~~~~~~~~~  145 (457)
T d1xm9a1          77 TNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE----------LIA-DALPVLADRVIIPFSGWCD  145 (457)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHH----------HHH-HHHHHHHHHTTHHHHTCC-
T ss_pred             HHHHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHH----------HHh-cccHHHHHHHHhhhhhhhc
Confidence            999999999999999999987544 7888899999999987654321          112 2334444333         


Q ss_pred             ------hcCCChhHHHHHHHHHHHhhcChhhHhHHhh-cCCHHHHHHHHhccCC--------------------------
Q 010533          322 ------HAGLSSPSLISASIALKAVAVNDEICKSVAE-NGGIDALLRCIDDSGL--------------------------  368 (508)
Q Consensus       322 ------~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e-~Ggi~~Lv~lL~~~~~--------------------------  368 (508)
                            ....+..++..++++|.+++.++++...+.. .|+++.++.++.....                          
T Consensus       146 ~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  225 (457)
T d1xm9a1         146 GNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAE  225 (457)
T ss_dssp             --------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHH
T ss_pred             chhhhhcccccHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHH
Confidence                  1223567788888889888888777766554 4556766665531100                          


Q ss_pred             ---------------------------------------------------------------------CCcHHHHHHHH
Q 010533          369 ---------------------------------------------------------------------QGNKTVARICC  379 (508)
Q Consensus       369 ---------------------------------------------------------------------~~~~~v~~~al  379 (508)
                                                                                           ..+..+...++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~  305 (457)
T d1xm9a1         226 VPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACA  305 (457)
T ss_dssp             SCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHH
Confidence                                                                                 00235566777


Q ss_pred             HHHHHhhCCch------hHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHH
Q 010533          380 SLLSKLAGSDS------NKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAML  453 (508)
Q Consensus       380 ~aL~~La~~~~------~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~  453 (508)
                      .++.+++.+..      .+..+.+.|+++.|+.+|.  +.++.+++.++++|.+|+ ++++++..+.+ ++++.++.+|.
T Consensus       306 ~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~--~~~~~v~~~a~~~l~~La-~~~~~~~~i~~-~~i~~li~~L~  381 (457)
T d1xm9a1         306 GALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQ--SGNSDVVRSGASLLSNMS-RHPLLHRVMGN-QVFPEVTRLLT  381 (457)
T ss_dssp             HHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTT--CSCHHHHHHHHHHHHHHH-TSGGGHHHHHH-HTHHHHHHTTT
T ss_pred             HHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhc--CccHHHHHHHHHHHHHHh-hChhHHHHHHH-hhHHHHHHHHh
Confidence            88888875432      3455667899999999998  778999999999999999 58888877765 67899999886


Q ss_pred             cCC----CcHHHHHHHHHHHHHhhhcCccchHHHHhccc
Q 010533          454 KFP----NAQQLQRSSCFMIRNLVARNPENSFCSVMVSR  488 (508)
Q Consensus       454 ~h~----~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~g~  488 (508)
                      .+.    .++.++..||.+|+|++..++++++.+++.|+
T Consensus       382 ~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~  420 (457)
T d1xm9a1         382 SHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSM  420 (457)
T ss_dssp             SCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHH
T ss_pred             ccccCcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCCC
Confidence            532    23578899999999999999999999999884

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.4e-18  Score=168.01  Aligned_cols=195  Identities=14%  Similarity=0.100  Sum_probs=168.3

Q ss_pred             HHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcCh-hhHhHHhhcC
Q 010533          276 DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVND-EICKSVAENG  354 (508)
Q Consensus       276 ~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~-e~~~~i~e~G  354 (508)
                      +....|+.+|.+|+.+.|          +++.+...||+++|+..+.++++++++..++++|++++.++ .....+.+.|
T Consensus        32 ~~~~~Al~~L~~L~~~~d----------~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~  101 (264)
T d1xqra1          32 QEREGALELLADLCENMD----------NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLG  101 (264)
T ss_dssp             HHHHHHHHHHHHHHTSHH----------HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCHH----------HHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            667778999999986543          56778899999999986655568889999999999999854 5566788999


Q ss_pred             CHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCh
Q 010533          355 GIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSP  433 (508)
Q Consensus       355 gi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~  433 (508)
                      |++.|+.++....   +..++..++.+|.+|+. ++.++..+...||++.|+.+|.  +.++.+++.++++|.+|+..++
T Consensus       102 ~i~~Lv~lL~~~~---~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~--~~~~~~~~~a~~~L~~l~~~~~  176 (264)
T d1xqra1         102 ALRKLLRLLDRDA---CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ--QQVQKLKVKSAFLLQNLLVGHP  176 (264)
T ss_dssp             HHHHHHHHHHHCS---CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH--SSCHHHHHHHHHHHHHHHHHCG
T ss_pred             chHHHHHHhhcCC---CHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHh--cCchHHHHHHHHHHHHHHhccH
Confidence            9999999998632   34799999999999985 6788899999999999999998  7789999999999999999899


Q ss_pred             hhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHhcc
Q 010533          434 ENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMVS  487 (508)
Q Consensus       434 ~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~g  487 (508)
                      +++..+.+.|+++.|+.+|+.  .++.+++.|+++|.+|+..+++.+..+...+
T Consensus       177 ~~~~~~~~~~~v~~L~~lL~~--~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~  228 (264)
T d1xqra1         177 EHKGTLCSMGMVQQLVALVRT--EHSPFHEHVLGALCSLVTDFPQGVRECREPE  228 (264)
T ss_dssp             GGHHHHHHTTHHHHHHHHHTS--CCSTHHHHHHHHHHHHHTTCHHHHHHHHCGG
T ss_pred             HHHHHHHHhhhHHHHHHHHcC--CCHHHHHHHHHHHHHHHhcCHHHHHHHHHhh
Confidence            999999999999999999953  4678999999999999988888877765543

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.3e-18  Score=164.63  Aligned_cols=196  Identities=14%  Similarity=0.170  Sum_probs=167.1

Q ss_pred             CHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHH-HHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHh
Q 010533          232 DPEILNSGFAVVAASATGNEVVKESYMELKIDELILE-ILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK  310 (508)
Q Consensus       232 ~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~-lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~  310 (508)
                      +.+.+..++.+|.+++ .+.+|+..++..||+++|+. +|++++.+++..|+++|.+++.++.         .....+.+
T Consensus        30 ~~~~~~~Al~~L~~L~-~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~---------~~~~~~~~   99 (264)
T d1xqra1          30 DQQEREGALELLADLC-ENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVA---------AIQEQVLG   99 (264)
T ss_dssp             HHHHHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCH---------HHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH-cCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH---------HHHHHHHH
Confidence            5677889999999997 56778899999999999986 5666666889999999999997542         12345668


Q ss_pred             cCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CC
Q 010533          311 IGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GS  388 (508)
Q Consensus       311 ~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La-~~  388 (508)
                      .|+++.|+.+|.+..++.++..++++|++++. ++.+...+.+.||++.|+.+|.+.    +..++..++.+|++|+ ++
T Consensus       100 ~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~----~~~~~~~a~~~L~~l~~~~  175 (264)
T d1xqra1         100 LGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ----VQKLKVKSAFLLQNLLVGH  175 (264)
T ss_dssp             TTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS----CHHHHHHHHHHHHHHHHHC
T ss_pred             cCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcC----chHHHHHHHHHHHHHHhcc
Confidence            89999999999876678899999999999997 556778889999999999999863    3489999999999986 57


Q ss_pred             chhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC
Q 010533          389 DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAG  443 (508)
Q Consensus       389 ~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G  443 (508)
                      ++++..+++.|+++.|+.+|+  ++++.+++.++++|.+|+..+++....+...+
T Consensus       176 ~~~~~~~~~~~~v~~L~~lL~--~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~  228 (264)
T d1xqra1         176 PEHKGTLCSMGMVQQLVALVR--TEHSPFHEHVLGALCSLVTDFPQGVRECREPE  228 (264)
T ss_dssp             GGGHHHHHHTTHHHHHHHHHT--SCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGG
T ss_pred             HHHHHHHHHhhhHHHHHHHHc--CCCHHHHHHHHHHHHHHHhcCHHHHHHHHHhh
Confidence            899999999999999999998  67889999999999999988888877776543

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=0.00013  Score=67.27  Aligned_cols=254  Identities=13%  Similarity=0.062  Sum_probs=164.3

Q ss_pred             HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHh
Q 010533          124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL  203 (508)
Q Consensus       124 l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l  203 (508)
                      .+.|...+.+.       +...-..|+..|....    ++         .++|.|+.+|++   .+..++..|+.+|..+
T Consensus        21 ~~~L~~~L~d~-------~~~vR~~A~~~L~~~~----~~---------~~~~~l~~~l~d---~~~~vr~~a~~aL~~l   77 (276)
T d1oyza_          21 DDELFRLLDDH-------NSLKRISSARVLQLRG----GQ---------DAVRLAIEFCSD---KNYIRRDIGAFILGQI   77 (276)
T ss_dssp             HHHHHHHTTCS-------SHHHHHHHHHHHHHHC----CH---------HHHHHHHHHHTC---SSHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhcCC-------CHHHHHHHHHHHHhhC----CH---------hHHHHHHHHHcC---CCHHHHHHHHHHHHHh
Confidence            45566777665       6777777888877663    22         358999999987   4788998999998876


Q ss_pred             hcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHH
Q 010533          204 VHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYD  283 (508)
Q Consensus       204 ~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~  283 (508)
                      .........     .++.+...+.. .++..+...++.+|+.++........     ..++.+...+......+...++.
T Consensus        78 ~~~~~~~~~-----~~~~l~~~~l~-d~~~~vr~~a~~aL~~~~~~~~~~~~-----~~~~~l~~~~~d~~~~vr~~a~~  146 (276)
T d1oyza_          78 KICKKCEDN-----VFNILNNMALN-DKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTNVRRATAF  146 (276)
T ss_dssp             CCCTTTHHH-----HHHHHHHHHHH-CSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             ccccccccc-----hHHHHHHHHhc-CCChhHHHHHHHHHHHHccccchhhH-----HHHHHHHHHhcCcchHHHHHHHH
Confidence            543211111     23344554433 35789999999999988754443222     23556666666655567777776


Q ss_pred             HHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHH
Q 010533          284 AIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCI  363 (508)
Q Consensus       284 aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL  363 (508)
                      ++..+.                    ....++.+..++... +..+...+..++..+......        .++.++..+
T Consensus       147 ~l~~~~--------------------~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~  197 (276)
T d1oyza_         147 AISVIN--------------------DKATIPLLINLLKDP-NGDVRNWAAFAININKYDNSD--------IRDCFVEML  197 (276)
T ss_dssp             HHHTC-----------------------CCHHHHHHHHTCS-SHHHHHHHHHHHHHHTCCCHH--------HHHHHHHHT
T ss_pred             HHhhcc--------------------hHHHHHHHHHhcccc-cchhhhhHHHHHHhhhccccc--------cchhhhhhh
Confidence            665432                    124677888887653 455556666666555443211        233445555


Q ss_pred             hccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC
Q 010533          364 DDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAG  443 (508)
Q Consensus       364 ~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G  443 (508)
                      .+    .+..+...+..++..+.          ....++.|+..+.  .  +.++..++.+|..+.  ++         +
T Consensus       198 ~~----~~~~~~~~~~~al~~~~----------~~~~~~~L~~~l~--d--~~vr~~a~~aL~~ig--~~---------~  248 (276)
T d1oyza_         198 QD----KNEEVRIEAIIGLSYRK----------DKRVLSVLCDELK--K--NTVYDDIIEAAGELG--DK---------T  248 (276)
T ss_dssp             TC----SCHHHHHHHHHHHHHTT----------CGGGHHHHHHHHT--S--SSCCHHHHHHHHHHC--CG---------G
T ss_pred             hh----hhhhhhhhhccccchhh----------hhhhHHHHHHHhC--C--hHHHHHHHHHHHHcC--CH---------H
Confidence            43    24478888888887753          2346889999887  2  358889999998875  33         4


Q ss_pred             cHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 010533          444 SGDLAIQAMLKFPNAQQLQRSSCFMIR  470 (508)
Q Consensus       444 ~i~~Lv~~L~~h~~~~~vq~~A~~aL~  470 (508)
                      .++.|.++|..+ ++..|+..|..+|.
T Consensus       249 ~~~~L~~~l~~~-~d~~vr~~A~~~L~  274 (276)
T d1oyza_         249 LLPVLDTMLYKF-DDNEIITSAIDKLK  274 (276)
T ss_dssp             GHHHHHHHHTTS-SCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHccC-CCHHHHHHHHHHHc
Confidence            778899989765 45778888877763

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.20  E-value=0.00031  Score=70.70  Aligned_cols=283  Identities=13%  Similarity=0.123  Sum_probs=174.2

Q ss_pred             cHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHH---hcCCh---HHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q 010533          174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFR---TGGGP---KLLVNILIDGNEDPEILNSGFAVVAASA  247 (508)
Q Consensus       174 avp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~---~~ggi---~~Lv~lL~~~~~~~~v~~~a~~~L~~l~  247 (508)
                      ++..++++|+..  ...++....+..+.-++.+++.+..++   .....   +++..+|.  .++.-++..++..+..++
T Consensus        75 ~~~~~l~lL~~~--sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~--~~d~~~~~~s~~i~~ll~  150 (477)
T d1ho8a_          75 TLIPLIHLLSTS--DNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLK--GDFQTVLISGFNVVSLLV  150 (477)
T ss_dssp             THHHHHHHHHSC--CCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSC--SSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhc--CcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhcc--CchhHHHHHHHHHHHHHH
Confidence            588899999875  456777778888887776654433332   12111   22333332  344556667777777765


Q ss_pred             cCChhhHHHHHHc-CcHHHHHHHHhc-CChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHH--hcCCHHHHHHHHhc
Q 010533          248 TGNEVVKESYMEL-KIDELILEILSR-QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA--KIGIARALVHSLHA  323 (508)
Q Consensus       248 ~~~e~nr~~i~~~-G~i~~Lv~lL~~-~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~--~~g~i~~Lv~lL~~  323 (508)
                      .....+.. ..+. .-...++..|.. .+.+.+.-+...|..|...+..|          ..+.  +...+++|++.|+.
T Consensus       151 ~~~~~~~~-~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R----------~~fw~~~~~~~~~l~~il~~  219 (477)
T d1ho8a_         151 QNGLHNVK-LVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYR----------DVIWLHEKKFMPTLFKILQR  219 (477)
T ss_dssp             STTTCCHH-HHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHH----------HHHHTTHHHHHHHHHHHHHH
T ss_pred             hccccccc-hHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHH----------HHHHHcccchHHHHHHHHHH
Confidence            43322221 1111 001223333433 33344444555677676655433          2332  22356677776654


Q ss_pred             C----------------CChhHHHHHHHHHHHhhcChhhHhHHhhcC--CHHHHHHHHhccCCCCcHHHHHHHHHHHHHh
Q 010533          324 G----------------LSSPSLISASIALKAVAVNDEICKSVAENG--GIDALLRCIDDSGLQGNKTVARICCSLLSKL  385 (508)
Q Consensus       324 ~----------------~d~~~~~~a~~aL~~La~~~e~~~~i~e~G--gi~~Lv~lL~~~~~~~~~~v~~~al~aL~~L  385 (508)
                      .                ....++..++.++|-|+.+++.+..+.+.+  -++.|+++++....+   .|.+-++.+|+||
T Consensus       220 a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KE---KvvRv~l~~l~Nl  296 (477)
T d1ho8a_         220 ATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKE---KVSRLCISIILQC  296 (477)
T ss_dssp             HHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSH---HHHHHHHHHHHHT
T ss_pred             HhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHH---HHHHHHHHHHHHH
Confidence            1                112567899999999999999988888764  388899999876543   8999999999999


Q ss_pred             hCCc--h----hHHHHHhCCcHHHHHHHHhccCCCHHH------------------------------------------
Q 010533          386 AGSD--S----NKSAIIENGGMDKLIVVSARFSDDASV------------------------------------------  417 (508)
Q Consensus       386 a~~~--~----~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v------------------------------------------  417 (508)
                      ...+  .    ....++..++++.+-.+..++-.++.+                                          
T Consensus       297 l~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se  376 (477)
T d1ho8a_         297 CSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDN  376 (477)
T ss_dssp             TSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCH
T ss_pred             hhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCCh
Confidence            7532  1    234456666666554455444443311                                          


Q ss_pred             ------------------------------------------HHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcC
Q 010533          418 ------------------------------------------LQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKF  455 (508)
Q Consensus       418 ------------------------------------------~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h  455 (508)
                                                                ..-||-=|..++...|.-+..+-..|+=..++++| .|
T Consensus       377 ~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm-~h  455 (477)
T d1ho8a_         377 GFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELL-NH  455 (477)
T ss_dssp             HHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHT-SC
T ss_pred             hHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHh-cC
Confidence                                                      12245555566666777777777788888899999 46


Q ss_pred             CCcHHHHHHHHHHHHHhhhcC
Q 010533          456 PNAQQLQRSSCFMIRNLVARN  476 (508)
Q Consensus       456 ~~~~~vq~~A~~aL~nL~~~~  476 (508)
                      + ++.|+.+|..++.-+..+|
T Consensus       456 ~-d~~Vr~eAL~avQklm~~n  475 (477)
T d1ho8a_         456 S-DSRVKYEALKATQAIIGYT  475 (477)
T ss_dssp             S-SHHHHHHHHHHHHHHHHHS
T ss_pred             C-CHHHHHHHHHHHHHHHHhc
Confidence            4 7999999999998887654

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=0.0002  Score=74.08  Aligned_cols=295  Identities=12%  Similarity=0.042  Sum_probs=178.9

Q ss_pred             HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHh
Q 010533          124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL  203 (508)
Q Consensus       124 l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l  203 (508)
                      +..|...+.+.       |......+++.|..++.. -+++.    .....+|.|.++++.    +.+++..+.+.|..+
T Consensus        12 i~~l~~~l~~~-------~~~~R~~a~~~l~~ia~~-lg~~~----~~~~lip~l~~~~~~----~~ev~~~~~~~l~~~   75 (588)
T d1b3ua_          12 IAVLIDELRNE-------DVQLRLNSIKKLSTIALA-LGVER----TRSELLPFLTDTIYD----EDEVLLALAEQLGTF   75 (588)
T ss_dssp             HHHHHHHTTCS-------CHHHHHHHHHTHHHHHHH-SCHHH----HHHTHHHHHHHTCCC----CHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhcCC-------CHHHHHHHHHHHHHHHHH-hCcHh----hHHHHHHHHHHHhcC----cHHHHHHHHHHHHHH
Confidence            44455666654       777778899998888763 12321    123568888887754    346766666666655


Q ss_pred             hcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHH
Q 010533          204 VHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYD  283 (508)
Q Consensus       204 ~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~  283 (508)
                      ...... +.. -..-++.+..++.  .++..|+..|+.++..++.....  .. ++.-.+|.+..+..+........|+.
T Consensus        76 ~~~~~~-~~~-~~~ll~~l~~l~~--~~~~~Vr~~a~~~l~~i~~~~~~--~~-~~~~l~p~i~~L~~~~~~~~r~~a~~  148 (588)
T d1b3ua_          76 TTLVGG-PEY-VHCLLPPLESLAT--VEETVVRDKAVESLRAISHEHSP--SD-LEAHFVPLVKRLAGGDWFTSRTSACG  148 (588)
T ss_dssp             SGGGTS-GGG-GGGGHHHHHHHTT--SSCHHHHHHHHHHHHHHHTTSCH--HH-HHHTHHHHHHHHHTCSSHHHHHHHGG
T ss_pred             HHHcCC-hhH-HHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHHhCCH--HH-HHHHHHHHHHHHhcccchHHHHHHHH
Confidence            431100 000 0112344444443  45788999999999998765432  22 22334555555555433345555666


Q ss_pred             HHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcC--hhhHhHHhhcCCHHHHHH
Q 010533          284 AIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN--DEICKSVAENGGIDALLR  361 (508)
Q Consensus       284 aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~--~e~~~~i~e~Ggi~~Lv~  361 (508)
                      .+..+...-+.        ....     ..++.+.+++++ .++.+...++.++..++..  .+...    ..-++.+..
T Consensus       149 ll~~~~~~~~~--------~~~~-----~l~~~~~~l~~D-~~~~VR~~a~~~l~~~~~~~~~~~~~----~~l~~~l~~  210 (588)
T d1b3ua_         149 LFSVCYPRVSS--------AVKA-----ELRQYFRNLCSD-DTPMVRRAAASKLGEFAKVLELDNVK----SEIIPMFSN  210 (588)
T ss_dssp             GHHHHTTTSCH--------HHHH-----HHHHHHHHHHTC-SCHHHHHHHHHHHHHHHHTSCHHHHH----HTHHHHHHH
T ss_pred             HHHHHHHHhhH--------HHHH-----HHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHhcHHHHH----HHHHHHHHH
Confidence            66666432111        1111     235677777765 3688899999999888763  22221    223456666


Q ss_pred             HHhccCCCCcHHHHHHHHHHHHHhhC--CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 010533          362 CIDDSGLQGNKTVARICCSLLSKLAG--SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARA  439 (508)
Q Consensus       362 lL~~~~~~~~~~v~~~al~aL~~La~--~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i  439 (508)
                      ++.+.    +..++..++.+|..++.  .++...    .-.+|.+..+++  ..+..|+..++.+|..++..-+   ..+
T Consensus       211 l~~d~----~~~vr~~a~~~l~~i~~~~~~~~~~----~~i~~~l~~~~~--D~~~~Vr~~~~~~l~~l~~~~~---~~~  277 (588)
T d1b3ua_         211 LASDE----QDSVRLLAVEACVNIAQLLPQEDLE----ALVMPTLRQAAE--DKSWRVRYMVADKFTELQKAVG---PEI  277 (588)
T ss_dssp             HHTCS----CHHHHTTHHHHHHHHHHHSCHHHHH----HHTHHHHHHHHT--CSSHHHHHHHHHTHHHHHHHHC---HHH
T ss_pred             HhcCC----chhhHHHHHHHHHHhhccCCHHHHH----HHHHHHHHHhcc--cccHHHHHHHHHhHHHHHHHhh---hhh
Confidence            66542    34889999999998864  222222    124678888887  5678999999999999873211   122


Q ss_pred             HhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhh
Q 010533          440 MEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA  474 (508)
Q Consensus       440 ~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~  474 (508)
                      .....++.+..++..  .+..++..|+.+|..++.
T Consensus       278 ~~~~l~~~l~~ll~d--~~~~vr~~a~~~l~~~~~  310 (588)
T d1b3ua_         278 TKTDLVPAFQNLMKD--CEAEVRAAASHKVKEFCE  310 (588)
T ss_dssp             HHHTHHHHHHHHHTC--SSHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHhc--cchHHHHHHHHHHHHHHH
Confidence            334567888888853  467899999999988764

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=0.00012  Score=80.21  Aligned_cols=331  Identities=16%  Similarity=0.097  Sum_probs=167.5

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHH
Q 010533          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (508)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~  202 (508)
                      .+..+...+.+.       +......|+..|..++..  ....-.-. -...+|.|+..|++   .+..++..++++|..
T Consensus       396 ~l~~l~~~l~s~-------~~~~reaa~~alg~i~eg--~~~~~~~~-l~~li~~l~~~l~d---~~~~Vr~~a~~~l~~  462 (888)
T d1qbkb_         396 ILPLLKELLFHH-------EWVVKESGILVLGAIAEG--CMQGMIPY-LPELIPHLIQCLSD---KKALVRSITCWTLSR  462 (888)
T ss_dssp             HHHHHHHTTTSS-------SHHHHHHHHHHHHHHTTT--SHHHHTTT-HHHHHHHHHHHTTS---SCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccc-------hhHHHHHHHHHhhhhhhh--HHHHhccc-chhhhHHHHHhccC---CCHHHHHHHHHHHHH
Confidence            444455555443       555555667777776653  21110000 01246677777765   467788888888876


Q ss_pred             hhcCC--cchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHH
Q 010533          203 LVHDV--QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQS  280 (508)
Q Consensus       203 l~~~~--~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~  280 (508)
                      ++..-  ..... .-...++.++..+.  ..++.|+..++++|..++......-..+. ...++.|+..+..........
T Consensus       463 ~~~~~~~~~~~~-~~~~~l~~ll~~l~--d~~~~V~~~a~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~  538 (888)
T d1qbkb_         463 YAHWVVSQPPDT-YLKPLMTELLKRIL--DSNKRVQEAACSAFATLEEEACTELVPYL-AYILDTLVFAFSKYQHKNLLI  538 (888)
T ss_dssp             THHHHHSSCHHH-HTTTHHHHHHHHHS--SSCHHHHHHHHHHHHHHHHHHTTSSGGGH-HHHHHHHHHHTTTCCHHHHHH
T ss_pred             HHHHhhhhhhhh-hhhhhHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHhhhhhhhHH-HHHHHHHHHHHhhhhHHHHHH
Confidence            65321  11111 22345667777665  35789999999999887631110000000 123444555555443322222


Q ss_pred             HHHHHHHhc---------------------------CCCcchhhhhhcchHHHHHH-hc--CC-------HHHHHHHHhc
Q 010533          281 LYDAIRVLL---------------------------TPDDDQVVASQVYGYARRFA-KI--GI-------ARALVHSLHA  323 (508)
Q Consensus       281 A~~aL~~L~---------------------------~~dd~r~~~~~a~~~~~~i~-~~--g~-------i~~Lv~lL~~  323 (508)
                      +..++..++                           .+++... + ...+....++ ..  +.       .+.+++++..
T Consensus       539 ~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~-~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~  616 (888)
T d1qbkb_         539 LYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDL-F-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQK  616 (888)
T ss_dssp             HHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTH-H-HHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHH-H-HHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHH
Confidence            222222221                           1111100 0 0000000010 00  00       0111111110


Q ss_pred             ----------------CCChhHHHHHHHHHHHhhc--ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHh
Q 010533          324 ----------------GLSSPSLISASIALKAVAV--NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKL  385 (508)
Q Consensus       324 ----------------~~d~~~~~~a~~aL~~La~--~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~L  385 (508)
                                      ..+.+.+..++.++..+..  .......+....-++.++.++.+.    +.++...++.+|+.|
T Consensus       617 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~----~~~vr~~a~~llgdl  692 (888)
T d1qbkb_         617 TLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK----MPEVRQSSFALLGDL  692 (888)
T ss_dssp             HHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCS----SHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCC----ChHHHHHHHHHHHHH
Confidence                            1123344444445555443  222222233333456666667642    358999999999988


Q ss_pred             hC-Cc-hhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHH
Q 010533          386 AG-SD-SNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQR  463 (508)
Q Consensus       386 a~-~~-~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~  463 (508)
                      +. .. ..+..+-  ..++.|+..|.  .....++.++++++..|+.+..+.....+. ..++.|+..++.......+.+
T Consensus       693 ~~~~~~~~~~~l~--~~~~~l~~~L~--~~~~~v~~~a~~~ig~ia~~~~~~~~py~~-~il~~L~~il~~~~~~~~v~~  767 (888)
T d1qbkb_         693 TKACFQHVKPCIA--DFMPILGTNLN--PEFISVCNNATWAIGEISIQMGIEMQPYIP-MVLHQLVEIINRPNTPKTLLE  767 (888)
T ss_dssp             HHHCGGGTGGGHH--HHHHHHHHTCC--GGGHHHHHHHHHHHHHHHHHTGGGGGGGSH-HHHHHHHHHHTCTTCCHHHHH
T ss_pred             HHhhhHHHHHHHH--HHHHHHHHHhC--cCCHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHcCCCccHHHHH
Confidence            73 22 2111111  23455666665  446789999999999998765544333222 357788888864334456889


Q ss_pred             HHHHHHHHhhhcCccchH
Q 010533          464 SSCFMIRNLVARNPENSF  481 (508)
Q Consensus       464 ~A~~aL~nL~~~~~e~~~  481 (508)
                      ++|.+|.-|+..+|+...
T Consensus       768 n~~~~lgrl~~~~p~~~~  785 (888)
T d1qbkb_         768 NTAITIGRLGYVCPQEVA  785 (888)
T ss_dssp             HHHHHHHHHHHHCHHHHG
T ss_pred             HHHHHHHHHHHHCHHHHH
Confidence            999999998877776543

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=0.0004  Score=63.82  Aligned_cols=214  Identities=10%  Similarity=-0.053  Sum_probs=127.7

Q ss_pred             CChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchh
Q 010533          217 GGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQV  296 (508)
Q Consensus       217 ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~  296 (508)
                      ...+.|+++|.  .+++.+...|+.+|....  ++         .+++.|+.+++..+..+...|+.+|..+....... 
T Consensus        19 ~~~~~L~~~L~--d~~~~vR~~A~~~L~~~~--~~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~-   84 (276)
T d1oyza_          19 LNDDELFRLLD--DHNSLKRISSARVLQLRG--GQ---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE-   84 (276)
T ss_dssp             SCHHHHHHHTT--CSSHHHHHHHHHHHHHHC--CH---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH-
T ss_pred             CCHHHHHHHhc--CCCHHHHHHHHHHHHhhC--CH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc-
Confidence            34567888887  468999999999998763  22         35789999999877788888999998886433211 


Q ss_pred             hhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHH
Q 010533          297 VASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVAR  376 (508)
Q Consensus       297 ~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~  376 (508)
                                    ...++.|...+.+..++.+...++.+|+.+........    ...++.+...+.+    .+..+..
T Consensus        85 --------------~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~----~~~~~~l~~~~~d----~~~~vr~  142 (276)
T d1oyza_          85 --------------DNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS----PKIVEQSQITAFD----KSTNVRR  142 (276)
T ss_dssp             --------------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH----HHHHHHHHHHTTC----SCHHHHH
T ss_pred             --------------cchHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhh----HHHHHHHHHHhcC----cchHHHH
Confidence                          11245566666555677888889999988875332211    1123444444443    2346777


Q ss_pred             HHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHH-----------------
Q 010533          377 ICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARA-----------------  439 (508)
Q Consensus       377 ~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i-----------------  439 (508)
                      .++.++..+.          +...++.++.++.  ..+..+...+..++..+....+.....+                 
T Consensus       143 ~a~~~l~~~~----------~~~~~~~l~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (276)
T d1oyza_         143 ATAFAISVIN----------DKATIPLLINLLK--DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAII  210 (276)
T ss_dssp             HHHHHHHTC-------------CCHHHHHHHHT--CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             HHHHHHhhcc----------hHHHHHHHHHhcc--cccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhcc
Confidence            7777665542          1234455555554  3344444444444444433222211111                 


Q ss_pred             -----HhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHH
Q 010533          440 -----MEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSV  484 (508)
Q Consensus       440 -----~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~  484 (508)
                           .....++.|++.++.    +.|+..++++|..+.  +++....+.
T Consensus       211 al~~~~~~~~~~~L~~~l~d----~~vr~~a~~aL~~ig--~~~~~~~L~  254 (276)
T d1oyza_         211 GLSYRKDKRVLSVLCDELKK----NTVYDDIIEAAGELG--DKTLLPVLD  254 (276)
T ss_dssp             HHHHTTCGGGHHHHHHHHTS----SSCCHHHHHHHHHHC--CGGGHHHHH
T ss_pred             ccchhhhhhhHHHHHHHhCC----hHHHHHHHHHHHHcC--CHHHHHHHH
Confidence                 112357888888852    346788999999874  566555443

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.96  E-value=0.00056  Score=68.79  Aligned_cols=277  Identities=10%  Similarity=0.032  Sum_probs=169.0

Q ss_pred             hHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHh--cCCh
Q 010533          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRT--GGGP  219 (508)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~--~ggi  219 (508)
                      |.-.+..+..-+..++..  +..+....-..--...+++.|...  .+.+.+.-|+..+..++...+-|..|..  ...+
T Consensus       135 d~~~~~~s~~i~~ll~~~--~~~~~~~~e~l~~~~~~l~~l~~~--~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~  210 (477)
T d1ho8a_         135 FQTVLISGFNVVSLLVQN--GLHNVKLVEKLLKNNNLINILQNI--EQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFM  210 (477)
T ss_dssp             HHHHHHHHHHHHHHHTST--TTCCHHHHHHHHHCHHHHHHHHCT--TCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhc--cccccchHHHHHHhhHHHHHhhcc--cccchHHHHHHHHHHHhcCccHHHHHHHcccchH
Confidence            444455556666666654  333222211111112233333332  3556666666667777665555666643  4467


Q ss_pred             HHHHHHHhcCC---------------CCHHHHHHHHHHHHHhhcCChhhHHHHHHc--CcHHHHHHHHhcCCh-HHHHHH
Q 010533          220 KLLVNILIDGN---------------EDPEILNSGFAVVAASATGNEVVKESYMEL--KIDELILEILSRQRN-DSIQSL  281 (508)
Q Consensus       220 ~~Lv~lL~~~~---------------~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~--G~i~~Lv~lL~~~~~-~~~~~A  281 (508)
                      +.++++|+...               ....++-.++-+++-+ +.++.....+.+.  +.|+.|+++++.... .+.+-+
T Consensus       211 ~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlL-SF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~  289 (477)
T d1ho8a_         211 PTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLL-TFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLC  289 (477)
T ss_dssp             HHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHH-TTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred             HHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHH-HcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence            88888876421               1246778888888877 4566666666655  458999999986544 788889


Q ss_pred             HHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCC--ChhHHHHHHHH-------HHHhhcCh--------
Q 010533          282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL--SSPSLISASIA-------LKAVAVND--------  344 (508)
Q Consensus       282 ~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~--d~~~~~~a~~a-------L~~La~~~--------  344 (508)
                      .++|+||+.......    .......++..++++. ++.|....  |+++..++-..       +..++.-+        
T Consensus       290 l~~l~Nll~~~~~~~----~~~~~~~~v~~~~l~~-l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~S  364 (477)
T d1ho8a_         290 ISIILQCCSTRVKQH----KKVIKQLLLLGNALPT-VQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDS  364 (477)
T ss_dssp             HHHHHHTTSSSSTTH----HHHHHHHHHHHCHHHH-HHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhhh----hhHHHHHHHHcchhHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhc
Confidence            999999985432110    0112334555555554 55565433  77665543321       12233222        


Q ss_pred             ----------------hhHhHHhhcCC--HHHHHHHHhcc------CCCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCC
Q 010533          345 ----------------EICKSVAENGG--IDALLRCIDDS------GLQGNKTVARICCSLLSKLAG-SDSNKSAIIENG  399 (508)
Q Consensus       345 ----------------e~~~~i~e~Gg--i~~Lv~lL~~~------~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~G  399 (508)
                                      ||..++-+.++  ++.|+++|...      ....++.++.-||.=|+.++. .|..|..+-+-|
T Consensus       365 g~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg  444 (477)
T d1ho8a_         365 KLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTG  444 (477)
T ss_dssp             TCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHS
T ss_pred             CCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcC
Confidence                            33444444333  67788888631      112245788889999999985 788888888889


Q ss_pred             cHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010533          400 GMDKLIVVSARFSDDASVLQEVMSIITVLSL  430 (508)
Q Consensus       400 gl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~  430 (508)
                      +=..++++|.  .+++.|+.+|+.++--|..
T Consensus       445 ~K~~vM~Lm~--h~d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         445 GKADIMELLN--HSDSRVKYEALKATQAIIG  473 (477)
T ss_dssp             HHHHHHHHTS--CSSHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHhc--CCCHHHHHHHHHHHHHHHH
Confidence            9899999997  5699999999999887653

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=0.00015  Score=75.08  Aligned_cols=291  Identities=10%  Similarity=0.003  Sum_probs=163.7

Q ss_pred             hHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHH
Q 010533          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKL  221 (508)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~  221 (508)
                      +.+....++..+..+|..- +...+....-...+|.+..+++.   .+..+...+...+..+.....  ........+|.
T Consensus       294 ~~~vr~~a~~~l~~~~~~l-~~~~~~~~~~~~i~~~l~~~~~d---~~~~vr~~~~~~l~~~~~~~~--~~~~~~~l~p~  367 (588)
T d1b3ua_         294 EAEVRAAASHKVKEFCENL-SADCRENVIMSQILPCIKELVSD---ANQHVKSALASVIMGLSPILG--KDNTIEHLLPL  367 (588)
T ss_dssp             SHHHHHHHHHHHHHHHHTS-CTTTHHHHHHHTHHHHHHHHHTC---SCHHHHHHHHTTGGGGHHHHC--HHHHHHHTHHH
T ss_pred             chHHHHHHHHHHHHHHHHH-hhhhhhhhhHHHHHHHHHHhhcC---CChHHHHHHHHHHhhhhhccc--hhHHHHHHHHH
Confidence            3444455666666666431 11122222233456677676655   355665555444444332110  11112335677


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhc
Q 010533          222 LVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQV  301 (508)
Q Consensus       222 Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a  301 (508)
                      +..+|.  .++.++...++..+..+...-.  ...+ ....++.+..++.+.+..+...++..+..++..      ++. 
T Consensus       368 l~~~l~--d~~~~v~~~~~~~l~~~~~~~~--~~~~-~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~------~~~-  435 (588)
T d1b3ua_         368 FLAQLK--DECPEVRLNIISNLDCVNEVIG--IRQL-SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ------LGV-  435 (588)
T ss_dssp             HHHHHT--CSCHHHHHHHHTTCHHHHHHSC--HHHH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH------HCG-
T ss_pred             HHHHHH--hhhhhhhhHHHHHHHHHHhhcc--hhhh-hhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH------cCh-
Confidence            777776  3577888887776665532111  1111 123567788888776667777777777766521      000 


Q ss_pred             chHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcC--hhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHH
Q 010533          302 YGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN--DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICC  379 (508)
Q Consensus       302 ~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~--~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al  379 (508)
                      .     .......+.+..++.+. ...+...++.+|+.|+..  .+..    ....++.+.+++.+    ++..++..++
T Consensus       436 ~-----~~~~~l~~~l~~~l~D~-~~~VR~~A~~~L~~l~~~~~~~~~----~~~i~~~l~~~~~~----~~~~~R~~~~  501 (588)
T d1b3ua_         436 E-----FFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGKEWA----HATIIPKVLAMSGD----PNYLHRMTTL  501 (588)
T ss_dssp             G-----GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHHHH----HHHTHHHHHHTTTC----SCHHHHHHHH
T ss_pred             H-----hHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHhCcHHH----HHHHHHHHHHHhcC----CCHHHHHHHH
Confidence            0     00112345566666653 466888899999888752  2211    11234566665543    2346777888


Q ss_pred             HHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcH
Q 010533          380 SLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQ  459 (508)
Q Consensus       380 ~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~  459 (508)
                      .++..++..-  .........+|.|+.++.  ...+.|+..++.+|..+...-+. .  .......+.+.+ |... .+.
T Consensus       502 ~~l~~l~~~~--~~~~~~~~ilp~ll~~~~--D~v~nVR~~a~~~l~~i~~~~~~-~--~~~~~i~~~l~~-L~~D-~d~  572 (588)
T d1b3ua_         502 FCINVLSEVC--GQDITTKHMLPTVLRMAG--DPVANVRFNVAKSLQKIGPILDN-S--TLQSEVKPILEK-LTQD-QDV  572 (588)
T ss_dssp             HHHHHHHHHH--HHHHHHHHTHHHHHHGGG--CSCHHHHHHHHHHHHHHGGGSCH-H--HHHHHHHHHHHH-HTTC-SSH
T ss_pred             HHHHHHHHHc--ChHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHcCc-H--hHHHHHHHHHHH-HcCC-CCH
Confidence            8888875311  112233457899999887  56799999999999999743221 1  122223344444 4333 578


Q ss_pred             HHHHHHHHHHHHhh
Q 010533          460 QLQRSSCFMIRNLV  473 (508)
Q Consensus       460 ~vq~~A~~aL~nL~  473 (508)
                      +|+..|+.||.-|+
T Consensus       573 dVr~~A~~al~~l~  586 (588)
T d1b3ua_         573 DVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998775

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=0.00023  Score=77.81  Aligned_cols=283  Identities=10%  Similarity=0.062  Sum_probs=148.2

Q ss_pred             cHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhhcCCcchhHHHh--cCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCC
Q 010533          174 GVELVCSICYKM-RCGSKRVLDSCLKTMALLVHDVQSTETFRT--GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGN  250 (508)
Q Consensus       174 avp~Lv~lL~~~-~~~~~~~~~~al~aLa~l~~~~~~~~~i~~--~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~  250 (508)
                      .+|.++.++... ...+...+..|+.++.+++.+..  ..+..  ...++.|+..|.  .+++.++..++|+|+.++...
T Consensus       392 il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~--~~~~~~l~~li~~l~~~l~--d~~~~Vr~~a~~~l~~~~~~~  467 (888)
T d1qbkb_         392 LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCM--QGMIPYLPELIPHLIQCLS--DKKALVRSITCWTLSRYAHWV  467 (888)
T ss_dssp             SHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSH--HHHTTTHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHH--HHhcccchhhhHHHHHhcc--CCCHHHHHHHHHHHHHHHHHh
Confidence            466666666422 12456777778888888776542  12211  234566777775  457999999999999876321


Q ss_pred             h-hhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCC----
Q 010533          251 E-VVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL----  325 (508)
Q Consensus       251 e-~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~----  325 (508)
                      . .....+ -...++.++..+...++.++..||++|.+++.......     .++...+     ++.|+..+....    
T Consensus       468 ~~~~~~~~-~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l-----~p~~~~i-----l~~l~~~l~~~~~~~~  536 (888)
T d1qbkb_         468 VSQPPDTY-LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTEL-----VPYLAYI-----LDTLVFAFSKYQHKNL  536 (888)
T ss_dssp             HSSCHHHH-TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSS-----GGGHHHH-----HHHHHHHTTTCCHHHH
T ss_pred             hhhhhhhh-hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHH-----HHHHHHHHhhhhHHHH
Confidence            1 111122 23578888888887777888999999998873211000     0111111     122222222111    


Q ss_pred             ----------------------------------------ChhHHHHHHHHHHHhhc--Chh---hHhHHhhcCCHHHHH
Q 010533          326 ----------------------------------------SSPSLISASIALKAVAV--NDE---ICKSVAENGGIDALL  360 (508)
Q Consensus       326 ----------------------------------------d~~~~~~a~~aL~~La~--~~e---~~~~i~e~Ggi~~Lv  360 (508)
                                                              +...+..+..+++.++.  ...   ....+.+. .+..+.
T Consensus       537 ~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~-~~~~l~  615 (888)
T d1qbkb_         537 LILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQR-CVNLVQ  615 (888)
T ss_dssp             HHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHH-HHHHHH
Confidence                                                    00011111122222211  000   00001000 001111


Q ss_pred             HHHh---------ccCCCCcHHHHHHHHHHHHHhhC--CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010533          361 RCID---------DSGLQGNKTVARICCSLLSKLAG--SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS  429 (508)
Q Consensus       361 ~lL~---------~~~~~~~~~v~~~al~aL~~La~--~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La  429 (508)
                      ..+.         ...+..+.++...++.++..++.  .......+.....++.+...+.  ..++.+++.|..++..|+
T Consensus       616 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~--~~~~~vr~~a~~llgdl~  693 (888)
T d1qbkb_         616 KTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQ--DKMPEVRQSSFALLGDLT  693 (888)
T ss_dssp             HHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHT--CSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhC--CCChHHHHHHHHHHHHHH
Confidence            1110         01111233666677777777752  2223333444456788888887  667899999999999888


Q ss_pred             cCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCc
Q 010533          430 LRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNP  477 (508)
Q Consensus       430 ~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~  477 (508)
                      ...+......++. .++.+++.+..  ....+..+|||++..++.+.+
T Consensus       694 ~~~~~~~~~~l~~-~~~~l~~~L~~--~~~~v~~~a~~~ig~ia~~~~  738 (888)
T d1qbkb_         694 KACFQHVKPCIAD-FMPILGTNLNP--EFISVCNNATWAIGEISIQMG  738 (888)
T ss_dssp             HHCGGGTGGGHHH-HHHHHHHTCCG--GGHHHHHHHHHHHHHHHHHTG
T ss_pred             HhhhHHHHHHHHH-HHHHHHHHhCc--CCHHHHHHHHHHHHHHHHHHH
Confidence            6555443322221 34555555532  345788899999999886543

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=0.00089  Score=65.47  Aligned_cols=279  Identities=7%  Similarity=-0.011  Sum_probs=153.3

Q ss_pred             CcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcch-hHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCh
Q 010533          173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST-ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE  251 (508)
Q Consensus       173 Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~-~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e  251 (508)
                      +.+|.|+..+.+.. .+......++.++..+....... ..-.....++.++..|.....+.+++..+++++..+.....
T Consensus       127 ~~~~~l~~~l~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~  205 (458)
T d1ibrb_         127 ELIPQLVANVTNPN-STEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK  205 (458)
T ss_dssp             THHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred             chhHHHHHHHHhhc-chHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhh
Confidence            46778888776643 34455555666666655322110 00011223566777776655678899999999988754333


Q ss_pred             hhHH-HHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHH-HHHHHhcCCChhH
Q 010533          252 VVKE-SYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARA-LVHSLHAGLSSPS  329 (508)
Q Consensus       252 ~nr~-~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~-Lv~lL~~~~d~~~  329 (508)
                      .... ........+.+..++...+.++...++.+|..++...-..  +   ..+   + . ..+.. +...+.+ .++++
T Consensus       206 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~--~---~~~---l-~-~~~~~~~~~~~~~-~~~~~  274 (458)
T d1ibrb_         206 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY--M---ETY---M-G-PALFAITIEAMKS-DIDEV  274 (458)
T ss_dssp             HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGG--C---TTT---T-T-TTHHHHHHHHHHC-SSHHH
T ss_pred             hhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHH--H---HHH---H-H-HHHHHHHHHHhcc-ccHHH
Confidence            2211 1112234555666666656678888888888776211000  0   000   0 1 22333 3333333 35666


Q ss_pred             HHHHHHHHHHhhcChhhH----------------------hHHhhcCCHHHHHHHHhccC---CCCcHHHHHHHHHHHHH
Q 010533          330 LISASIALKAVAVNDEIC----------------------KSVAENGGIDALLRCIDDSG---LQGNKTVARICCSLLSK  384 (508)
Q Consensus       330 ~~~a~~aL~~La~~~e~~----------------------~~i~e~Ggi~~Lv~lL~~~~---~~~~~~v~~~al~aL~~  384 (508)
                      ...++..+..++......                      .... ...++.+...+....   +..+..+...+..++..
T Consensus       275 ~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~  353 (458)
T d1ibrb_         275 ALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLML  353 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHH-HHHhhhHHhhhhcchhhhccccccHHHHHHHHHHH
Confidence            677777666665321100                      0000 112233444443211   11123467778888887


Q ss_pred             hhC--CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHhcCcHHHHHHHHHcCCCcHHH
Q 010533          385 LAG--SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRS-PENAARAMEAGSGDLAIQAMLKFPNAQQL  461 (508)
Q Consensus       385 La~--~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~-~~~~~~i~~~G~i~~Lv~~L~~h~~~~~v  461 (508)
                      ++.  .++...     ..++.+.+.++  +++..+++.++.+|..++.+. ++.....+ ...++.++..++ + .++.|
T Consensus       354 l~~~~~~~~~~-----~l~~~i~~~l~--s~~~~~r~aal~~l~~i~~~~~~~~~~~~l-~~i~~~l~~~l~-d-~~~~V  423 (458)
T d1ibrb_         354 LATCCEDDIVP-----HVLPFIKEHIK--NPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMK-D-PSVVV  423 (458)
T ss_dssp             HHHHTTTTHHH-----HHHHHHHHHTT--CSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGG-C-SCHHH
T ss_pred             HHHhccHhhhh-----HHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHhcCHhHHHHHH-HHHHHHHHHHhC-C-CCHHH
Confidence            763  222211     13455666666  677899999999999998532 22222222 346788888885 3 46899


Q ss_pred             HHHHHHHHHHhhh
Q 010533          462 QRSSCFMIRNLVA  474 (508)
Q Consensus       462 q~~A~~aL~nL~~  474 (508)
                      +..|||+|..++.
T Consensus       424 R~~a~~~l~~i~~  436 (458)
T d1ibrb_         424 RDTAAWTVGRICE  436 (458)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998874

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=0.001  Score=65.06  Aligned_cols=243  Identities=9%  Similarity=-0.004  Sum_probs=133.8

Q ss_pred             cHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcch--hHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCh
Q 010533          174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST--ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE  251 (508)
Q Consensus       174 avp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~--~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e  251 (508)
                      .++.++..+.+.+ .+.++...|+.++..+.......  .........+.+..++.  .++.++...++.++..++....
T Consensus       172 il~~~~~~l~~~~-~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~l~~i~~~~~  248 (458)
T d1ibrb_         172 ILTAIIQGMRKEE-PSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ--CPDTRVRVAALQNLVKIMSLYY  248 (458)
T ss_dssp             HHHHHHHHHSTTC-CCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHhcccc-cCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhc--CCCHHHHHHHHHHHHHHHHHhH
Confidence            4677777776543 35678888888888776432110  11111123344444444  4578999999999998875443


Q ss_pred             hhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCc------------chhhhhhcchHHHHHHhcCCHHHHHH
Q 010533          252 VVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDD------------DQVVASQVYGYARRFAKIGIARALVH  319 (508)
Q Consensus       252 ~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd------------~r~~~~~a~~~~~~i~~~g~i~~Lv~  319 (508)
                      ..-...+..-..+.+...+.+..+++...++..+..++....            ................+ ..++.+.+
T Consensus       249 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~  327 (458)
T d1ibrb_         249 QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQ-YLVPILTQ  327 (458)
T ss_dssp             GGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHH-HHhhhHHh
Confidence            321111222233444555555555777778877776652110            00000000011111211 23455666


Q ss_pred             HHhcCC------ChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCc--hh
Q 010533          320 SLHAGL------SSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSD--SN  391 (508)
Q Consensus       320 lL~~~~------d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~--~~  391 (508)
                      .+....      +..+...++.++..++..-.       .-.++.++..+...-.++++.++..++.+|+.++...  ..
T Consensus       328 ~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~-------~~~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~  400 (458)
T d1ibrb_         328 TLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-------DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ  400 (458)
T ss_dssp             HTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-------TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTT
T ss_pred             hhhcchhhhccccccHHHHHHHHHHHHHHhcc-------HhhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhH
Confidence            554322      12456666777766664211       0113444444433322345689999999999998432  21


Q ss_pred             HHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010533          392 KSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL  430 (508)
Q Consensus       392 k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~  430 (508)
                      -...+ ...++.|+..++  .+++.|+..||++|..++.
T Consensus       401 ~~~~l-~~i~~~l~~~l~--d~~~~VR~~a~~~l~~i~~  436 (458)
T d1ibrb_         401 LKPLV-IQAMPTLIELMK--DPSVVVRDTAAWTVGRICE  436 (458)
T ss_dssp             TCTTT-TTHHHHHHHGGG--CSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHH
Confidence            11111 246788999988  6789999999999999874

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.025  Score=59.58  Aligned_cols=310  Identities=11%  Similarity=0.034  Sum_probs=166.6

Q ss_pred             HHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcch---hHHHhcCChHH
Q 010533          145 EMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST---ETFRTGGGPKL  221 (508)
Q Consensus       145 ~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~---~~i~~~ggi~~  221 (508)
                      ....++..|..+|+. -++.. ..-.-...+|.++..+.+.+ .+.++...++.++..........   ..+ ..-.++.
T Consensus       146 ~~~~~l~~l~~i~~~-~~~~~-~~~~~~~il~~i~~~l~~~~-~~~~v~~~a~~~l~~~~~~~~~~~~~~~~-~~~i~~~  221 (876)
T d1qgra_         146 MKESTLEAIGYICQD-IDPEQ-LQDKSNEILTAIIQGMRKEE-PSNNVKLAATNALLNSLEFTKANFDKESE-RHFIMQV  221 (876)
T ss_dssp             HHHHHHHHHHHHHHH-SCHHH-HGGGHHHHHHHHHHHHSTTC-SCHHHHHHHHHHHHHHGGGCHHHHTSHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-CCHHH-HHHHHHHHHHHHHHHHcCcC-ccHHHHHHHHHHHHHHHHHhhhhhhHHHH-HHHHHHH
Confidence            344567777777753 01111 11111235777888776543 35678888888887765432110   011 0112333


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchh-----
Q 010533          222 LVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQV-----  296 (508)
Q Consensus       222 Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~-----  296 (508)
                      +...+.  ..+.+++..++.++..++...+..-...+.......+...+....+++...++..+..++.......     
T Consensus       222 l~~~~~--~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  299 (876)
T d1qgra_         222 VCEATQ--CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASE  299 (876)
T ss_dssp             HHHHTT--CSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhc--CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            444443  4578899999999988876555443333444455566666666555666666655555542110000     


Q ss_pred             -------hhhhcchHHHHHHhcCCHHHHHHHHhcCC------ChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHH
Q 010533          297 -------VASQVYGYARRFAKIGIARALVHSLHAGL------SSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCI  363 (508)
Q Consensus       297 -------~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~------d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL  363 (508)
                             +.....-..+.. ....++.+...+....      +..+...+..++..++...       ...+++.++..+
T Consensus       300 ~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~-------~~~~~~~~~~~i  371 (876)
T d1qgra_         300 AAEQGRPPEHTSKFYAKGA-LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC-------EDDIVPHVLPFI  371 (876)
T ss_dssp             HHHHSSCCSSCCCCHHHHH-HHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHH-------GGGGHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHHHH-HHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHh-------hhhhhhhhHHHH
Confidence                   000000011111 1123455555554322      1135555666665555321       122456666666


Q ss_pred             hccCCCCcHHHHHHHHHHHHHhhCCc--hhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 010533          364 DDSGLQGNKTVARICCSLLSKLAGSD--SNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAME  441 (508)
Q Consensus       364 ~~~~~~~~~~v~~~al~aL~~La~~~--~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~  441 (508)
                      .......+....+.++.++..++...  ..-.... ...++.++..+.  ..++.|+..+++++..++...+...   ..
T Consensus       372 ~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~l~~~l~--d~~~~vr~~a~~~l~~~~~~~~~~~---~~  445 (876)
T d1qgra_         372 KEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMK--DPSVVVRDTAAWTVGRICELLPEAA---IN  445 (876)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHCGGGT---SS
T ss_pred             HHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHH-HHHHHHHHHhhc--CCccHHHHHHHHHHHHHHHHcchhh---hh
Confidence            65444445678888888898886432  2222222 246788888887  6689999999999999985433211   11


Q ss_pred             cCcHHHHHHHH-HcCCCcHHHHHHHHHHHHHhhh
Q 010533          442 AGSGDLAIQAM-LKFPNAQQLQRSSCFMIRNLVA  474 (508)
Q Consensus       442 ~G~i~~Lv~~L-~~h~~~~~vq~~A~~aL~nL~~  474 (508)
                      ...++.++..+ ....+++.++..+||++.+++.
T Consensus       446 ~~~~~~~~~~l~~~l~~~~~v~~~~~~~l~~l~~  479 (876)
T d1qgra_         446 DVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAE  479 (876)
T ss_dssp             TTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            12233333322 2223467899999999999864

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.28  E-value=0.037  Score=57.88  Aligned_cols=372  Identities=13%  Similarity=0.107  Sum_probs=187.5

Q ss_pred             hhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHhh--ccccCCCccccCCCCCCCCCChHHHHHHHHHHHhhcCCCCCCh
Q 010533           63 TISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSL--QGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSD  140 (508)
Q Consensus        63 ~isQetfd~~v~eni~~~~m~p~eal~~aI~q~~~--qgvdLs~i~~~~~~~~~~~~~~v~~~l~~L~~~l~~~~~~~~~  140 (508)
                      .|+++.. +.+++.+-..=.+++.-++..+.+.-.  -..|++.             ..-.+.+..|...+.+.      
T Consensus        87 ~i~~~~~-~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~-------------~~wpeli~~L~~~~~s~------  146 (861)
T d2bpta1          87 QVSPEAK-NQIKTNALTALVSIEPRIANAAAQLIAAIADIELPH-------------GAWPELMKIMVDNTGAE------  146 (861)
T ss_dssp             HSCHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG-------------TCCHHHHHHHHHHTSTT------
T ss_pred             cCCHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCc-------------CchHHHHHHHHHHhcCC------
Confidence            4677777 334444333224566777766655311  1112210             00124566666666543      


Q ss_pred             hhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHH---HhcccCCCHHHHHHHHHHHHHhhcCCcch--hHHHh
Q 010533          141 EDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSI---CYKMRCGSKRVLDSCLKTMALLVHDVQST--ETFRT  215 (508)
Q Consensus       141 ~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~l---L~~~~~~~~~~~~~al~aLa~l~~~~~~~--~~i~~  215 (508)
                      .+......++..|..+|..- ++....  .-....+.|..+   +.+.. .+..+...++.++..+...-.+.  .....
T Consensus       147 ~~~~~~~~al~~l~~i~e~~-~~~~~~--~~~~~~~il~~i~~~~~~~~-~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~  222 (861)
T d2bpta1         147 QPENVKRASLLALGYMCESA-DPQSQA--LVSSSNNILIAIVQGAQSTE-TSKAVRLAALNALADSLIFIKNNMEREGER  222 (861)
T ss_dssp             SCHHHHHHHHHHHHHHHHTS-STTSST--TGGGHHHHHHHHHHHHSTTC-CCHHHHHHHHHHHHHHGGGCHHHHTSHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHh-hHHHHH--HHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHhHhHHhhhhh
Confidence            12333456778888888541 111100  011122333333   33322 45678888888887766432110  01111


Q ss_pred             cCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcch
Q 010533          216 GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQ  295 (508)
Q Consensus       216 ~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r  295 (508)
                      ...++.+...+.  .++.+++..++.++..++......-...+..-....+....++.++.+...++..+..++......
T Consensus       223 ~~~~~~l~~~~~--~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~  300 (861)
T d2bpta1         223 NYLMQVVCEATQ--AEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDI  300 (861)
T ss_dssp             HHHHHHHHHHHT--CSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHhHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHH
Confidence            223455666665  457899999999998887544332222222112222333333444466666776666654211000


Q ss_pred             hh--------hhhcchHHHHHHhcCCHHHHHHHHhcCC------ChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHH
Q 010533          296 VV--------ASQVYGYARRFAKIGIARALVHSLHAGL------SSPSLISASIALKAVAVNDEICKSVAENGGIDALLR  361 (508)
Q Consensus       296 ~~--------~~~a~~~~~~i~~~g~i~~Lv~lL~~~~------d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~  361 (508)
                      ..        ....+........ ..++.+...+....      +......+..+|..++....       ...++.+..
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~l~-~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~  372 (861)
T d2bpta1         301 AYELAQFPQSPLQSYNFALSSIK-DVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG-------NHILEPVLE  372 (861)
T ss_dssp             HHHHHHCTTCSCCCCCHHHHHHH-HHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG-------GGGHHHHHH
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcc-------hhhhhhhcc
Confidence            00        0000111111111 23566666665432      12344555566655553211       112444454


Q ss_pred             HHhccCCCCcHHHHHHHHHHHHHhhCCc-hh-HHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 010533          362 CIDDSGLQGNKTVARICCSLLSKLAGSD-SN-KSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARA  439 (508)
Q Consensus       362 lL~~~~~~~~~~v~~~al~aL~~La~~~-~~-k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i  439 (508)
                      .+.......+......++.++..++... .. ....+. ..++.++..+.  ..++.|++.+++++..++...+..   +
T Consensus       373 ~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~-~~l~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~---~  446 (861)
T d2bpta1         373 FVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMN--DQSLQVKETTAWCIGRIADSVAES---I  446 (861)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHHGGG---S
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHH-HHHHHHHHHhc--CcchhhhhHHHHHHHHHHHHhchh---h
Confidence            4443333345688889999999987532 22 222222 35788888887  668999999999999987422111   1


Q ss_pred             HhcCcHHHHHHHH-HcCCCcHHHHHHHHHHHHHhhh
Q 010533          440 MEAGSGDLAIQAM-LKFPNAQQLQRSSCFMIRNLVA  474 (508)
Q Consensus       440 ~~~G~i~~Lv~~L-~~h~~~~~vq~~A~~aL~nL~~  474 (508)
                      ......+.++..+ ....+++.++..+|+++.+++.
T Consensus       447 ~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~  482 (861)
T d2bpta1         447 DPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVE  482 (861)
T ss_dssp             CTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred             hhHHhhhhhhHHHHhccccChHHHHHHHHHHHHHHH
Confidence            1122333333322 2223467888899999888764

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.0023  Score=71.41  Aligned_cols=257  Identities=12%  Similarity=0.113  Sum_probs=139.0

Q ss_pred             hHHHHHHHHHHHHHHhCCC---CChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCC
Q 010533          142 DLNEMMGLFDKLIELCGGN---EGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGG  218 (508)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~---~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~gg  218 (508)
                      |.+.-..|+..|.+..+..   .++.     .....++.|+.+|..   .+.+++..|+.+|..+...-.+  ..+ ...
T Consensus        16 D~d~R~ma~~dl~~~l~~~~~~~~~~-----~~~~i~~~ll~~L~D---~~~~Vq~~A~k~l~~l~~~~~~--~~~-~~l   84 (1207)
T d1u6gc_          16 DKDFRFMATNDLMTELQKDSIKLDDD-----SERKVVKMILKLLED---KNGEVQNLAVKCLGPLVSKVKE--YQV-ETI   84 (1207)
T ss_dssp             SHHHHHHHHHHHHHHTSSSCCSCCTT-----HHHHHHHHHHHHTTC---SSHHHHHHHHHHHHHHHTTSCH--HHH-HHH
T ss_pred             CHhHHHHHHHHHHHHHhhcccccChH-----HHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHhCcH--hhH-HHH
Confidence            8888888998888877642   1111     112368899999876   4789999999999888764321  111 223


Q ss_pred             hHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCh-h--hH--HHHHHcCcHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCC
Q 010533          219 PKLLVNILIDGNEDPEILNSGFAVVAASATGNE-V--VK--ESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPD  292 (508)
Q Consensus       219 i~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e-~--nr--~~i~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~~L~~~d  292 (508)
                      ++.|+..|..  ++..+...+..+|..+...-+ .  ..  ...+-...++.+...+....+ .+...++.+|..+....
T Consensus        85 ~~~L~~~l~~--~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~  162 (1207)
T d1u6gc_          85 VDTLCTNMLS--DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQ  162 (1207)
T ss_dssp             HHHHHHHTTC--SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcC--CchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHh
Confidence            4555555542  344445555444444321110 0  00  000111233444454544433 55666776676654211


Q ss_pred             cchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcC--hhhHhHHhhcCCHHHHHHHHhccCCCC
Q 010533          293 DDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN--DEICKSVAENGGIDALLRCIDDSGLQG  370 (508)
Q Consensus       293 d~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~--~e~~~~i~e~Ggi~~Lv~lL~~~~~~~  370 (508)
                      ....     ..+..     ..++.|+..|.+ ++..+...++.+|+.|+..  ++....     -++.++..+..+... 
T Consensus       163 g~~l-----~~~~~-----~il~~l~~~l~~-~~~~vR~~A~~~l~~l~~~~~~~~~~~-----~~~~ll~~l~~~~~~-  225 (1207)
T d1u6gc_         163 GGLL-----VNFHP-----SILTCLLPQLTS-PRLAVRKRTIIALGHLVMSCGNIVFVD-----LIEHLLSELSKNDSM-  225 (1207)
T ss_dssp             CSSC-----TTTHH-----HHHHHHGGGGGC-SSHHHHHHHHHHHHHHTTTC----CTT-----HHHHHHHHHHHTCSS-
T ss_pred             hHhh-----HHHHH-----HHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHCCHHHHHH-----HHHHHHHHHccCCCH-
Confidence            0000     01111     134555555554 3567888999999998763  222222     245666666543222 


Q ss_pred             cHHHHHHHHHHHHHhhCCchhHHHHHh--CCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChh
Q 010533          371 NKTVARICCSLLSKLAGSDSNKSAIIE--NGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPE  434 (508)
Q Consensus       371 ~~~v~~~al~aL~~La~~~~~k~~Iv~--~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~  434 (508)
                        .+...++.+|..++.....+  +..  ...++.++..+.  .+++.+++.++.++..++...++
T Consensus       226 --~~~~~~~~~l~~l~~~~~~~--~~~~l~~i~~~l~~~l~--~~~~~~r~~al~~l~~l~~~~~~  285 (1207)
T d1u6gc_         226 --STTRTYIQCIAAISRQAGHR--IGEYLEKIIPLVVKFCN--VDDDELREYCIQAFESFVRRCPK  285 (1207)
T ss_dssp             --CSCTTHHHHHHHHHHHSSGG--GTTSCTTHHHHHHHHHS--SCCTTTHHHHHHHHHHHHHCTTC
T ss_pred             --HHHHHHHHHHHHHHHHcchh--hHHHHHHHHHHHHHHhc--CccHHHHHHHHHHHHHHHHhChh
Confidence              34455666666665211000  111  245788889988  66788999999999988765543

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.0038  Score=69.58  Aligned_cols=277  Identities=10%  Similarity=0.050  Sum_probs=153.3

Q ss_pred             HHhcccCCCHHHHHHHHHHHHHhhcCCcch-hHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHH
Q 010533          181 ICYKMRCGSKRVLDSCLKTMALLVHDVQST-ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYME  259 (508)
Q Consensus       181 lL~~~~~~~~~~~~~al~aLa~l~~~~~~~-~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~  259 (508)
                      +|.+-...|++++.-|++.|...++..... ..-.....++.|+++|.  ..+++|+..|+++|+.++.+..+..   + 
T Consensus         8 ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~--D~~~~Vq~~A~k~l~~l~~~~~~~~---~-   81 (1207)
T d1u6gc_           8 LLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE--DKNGEVQNLAVKCLGPLVSKVKEYQ---V-   81 (1207)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHHTTSCHHH---H-
T ss_pred             HHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhCcHhh---H-
Confidence            333333368888888888777665432110 11111235678888886  3589999999999999876544321   1 


Q ss_pred             cCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHH
Q 010533          260 LKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKA  339 (508)
Q Consensus       260 ~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~  339 (508)
                      ...++.|+..|.+.+......++.+|+.+...=-...   ........+. ...++.+...+....+..+...++..|..
T Consensus        82 ~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~---~~~~~~~~~~-~~l~~~l~~~~~~~~~~~v~~~al~~l~~  157 (1207)
T d1u6gc_          82 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPAS---SGSALAANVC-KKITGRLTSAIAKQEDVSVQLEALDIMAD  157 (1207)
T ss_dssp             HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC--------CCTHHHHH-HHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhccccc---ccchhHHHHH-HHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence            1345667776766555555556666665531100000   0000111111 12345666666655566677777777776


Q ss_pred             hhcChhh-HhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHH
Q 010533          340 VAVNDEI-CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVL  418 (508)
Q Consensus       340 La~~~e~-~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~  418 (508)
                      +...... ..... ...++.++..+.+    ++..|++.|+.+|+.|+..-..  .. -...++.++..+..+ .+...+
T Consensus       158 l~~~~g~~l~~~~-~~il~~l~~~l~~----~~~~vR~~A~~~l~~l~~~~~~--~~-~~~~~~~ll~~l~~~-~~~~~~  228 (1207)
T d1u6gc_         158 MLSRQGGLLVNFH-PSILTCLLPQLTS----PRLAVRKRTIIALGHLVMSCGN--IV-FVDLIEHLLSELSKN-DSMSTT  228 (1207)
T ss_dssp             HHHHTCSSCTTTH-HHHHHHHGGGGGC----SSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHT-CSSCSC
T ss_pred             HHHHhhHhhHHHH-HHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHHCCH--HH-HHHHHHHHHHHHccC-CCHHHH
Confidence            6542111 00000 0123334444443    3458999999999999753211  01 113467777766543 234456


Q ss_pred             HHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccc
Q 010533          419 QEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPEN  479 (508)
Q Consensus       419 e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~  479 (508)
                      ..++.+|..|+...+...... -...++.+++.+..  .+..+++.+..++..++...++.
T Consensus       229 ~~~~~~l~~l~~~~~~~~~~~-l~~i~~~l~~~l~~--~~~~~r~~al~~l~~l~~~~~~~  286 (1207)
T d1u6gc_         229 RTYIQCIAAISRQAGHRIGEY-LEKIIPLVVKFCNV--DDDELREYCIQAFESFVRRCPKE  286 (1207)
T ss_dssp             TTHHHHHHHHHHHSSGGGTTS-CTTHHHHHHHHHSS--CCTTTHHHHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHHHHHcchhhHHH-HHHHHHHHHHHhcC--ccHHHHHHHHHHHHHHHHhChhh
Confidence            667777777775433321111 13457888888853  45678888989999988766543

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.017  Score=61.09  Aligned_cols=285  Identities=12%  Similarity=0.033  Sum_probs=148.1

Q ss_pred             CcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHh-cCCCCHHHHHHHHHHHHHhhcCCh
Q 010533          173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILI-DGNEDPEILNSGFAVVAASATGNE  251 (508)
Q Consensus       173 Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~-~~~~~~~v~~~a~~~L~~l~~~~e  251 (508)
                      ..+|.++..+..   .+..+...+++++..++....  ..+.....++.++..|. .-.+++.++..+++++.+++....
T Consensus       408 ~~~~~l~~~l~d---~~~~vr~~a~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~l~~l~~~~~  482 (876)
T d1qgra_         408 QAMPTLIELMKD---PSVVVRDTAAWTVGRICELLP--EAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAY  482 (876)
T ss_dssp             HHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHCG--GGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcC---CccHHHHHHHHHHHHHHHHcc--hhhhhHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence            356777777765   467788888888877764321  12222334445555442 224578899999999888753211


Q ss_pred             hhHH-----------HHH--HcCcHHHHHHHHhcCCh---HHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHH
Q 010533          252 VVKE-----------SYM--ELKIDELILEILSRQRN---DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIAR  315 (508)
Q Consensus       252 ~nr~-----------~i~--~~G~i~~Lv~lL~~~~~---~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~  315 (508)
                      ....           .+.  -...++.+...+.....   .+...+..++..+........     .++...+.. -.++
T Consensus       483 ~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~-~~~~  556 (876)
T d1qgra_         483 EAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDC-----YPAVQKTTL-VIME  556 (876)
T ss_dssp             HTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTT-----HHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccccHhHHHHHHHHHHHhhhhhhhHH-----HHHHHHHHH-HHHH
Confidence            0000           000  01234556666654321   455556666655543221110     112222211 1233


Q ss_pred             HHHHHHhcCC---C---h----hHHHHHHHHHHHhhcC--hhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHH
Q 010533          316 ALVHSLHAGL---S---S----PSLISASIALKAVAVN--DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLS  383 (508)
Q Consensus       316 ~Lv~lL~~~~---d---~----~~~~~a~~aL~~La~~--~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~  383 (508)
                      .+...+....   .   .    ..+..++.++..+...  ++....+.+ ..++.++.++....+.  ..+.+.++.++.
T Consensus       557 ~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~--~~~~~~~l~~l~  633 (876)
T d1qgra_         557 RLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISD-VVMASLLRMFQSTAGS--GGVQEDALMAVS  633 (876)
T ss_dssp             HHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHH-HHHHHHHHHC-----C--CHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHHHHHHHcchhhhhhhHH-HHHHHHHHHHhcCCCC--cchHHHHHHHHH
Confidence            3333333221   1   1    2234455555555432  222222221 2345566666543332  278888999998


Q ss_pred             HhhC--CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHH
Q 010533          384 KLAG--SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQL  461 (508)
Q Consensus       384 ~La~--~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~v  461 (508)
                      .|+.  .+.....+-  -.+|.|+..|.. ..++.++..++.++..++...+....... ...++.+++.+.....+..+
T Consensus       634 ~l~~~~~~~~~~~l~--~ii~~l~~~l~~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~  709 (876)
T d1qgra_         634 TLVEVLGGEFLKYME--AFKPFLGIGLKN-YAEYQVCLAAVGLVGDLCRALQSNIIPFC-DEVMQLLLENLGNENVHRSV  709 (876)
T ss_dssp             HHHHHHGGGGGGGHH--HHHHHHHHHHHH-CTTHHHHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHTCTTSCGGG
T ss_pred             HHHHHcchhhHHHHH--HHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHhHHhhhhhH-HHHHHHHHHHhCCccCCHHH
Confidence            8863  111111111  245777777763 34578999999999888754444333322 23567788888765445667


Q ss_pred             HHHHHHHHHHhhhc
Q 010533          462 QRSSCFMIRNLVAR  475 (508)
Q Consensus       462 q~~A~~aL~nL~~~  475 (508)
                      +..+++++..++..
T Consensus       710 k~~~~~~i~~i~~~  723 (876)
T d1qgra_         710 KPQILSVFGDIALA  723 (876)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            78899999888643

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.75  E-value=0.027  Score=59.10  Aligned_cols=257  Identities=12%  Similarity=0.022  Sum_probs=139.3

Q ss_pred             CCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCC-----------------
Q 010533          188 GSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGN-----------------  250 (508)
Q Consensus       188 ~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~-----------------  250 (508)
                      +|.+++..|-..|..+...+.       .+-+..++.++.....+..++..|+-.|.+....+                 
T Consensus        17 ~d~~~r~~Ae~~L~~~~~~~~-------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~~~~~~i~   89 (861)
T d2bpta1          17 PDQNIRLTSETQLKKLSNDNF-------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVS   89 (861)
T ss_dssp             SSHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSC
T ss_pred             CCHHHHHHHHHHHHHHHhcCc-------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhHHhhhHhcCC
Confidence            356666666666655443210       12345566666555556677777776666654332                 


Q ss_pred             hhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHH
Q 010533          251 EVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSL  330 (508)
Q Consensus       251 e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~  330 (508)
                      ++.|..|     -..++..|.+.+..+...++.++..++..|-+.       ..+.     ..++.|++.+.+..+....
T Consensus        90 ~~~~~~i-----k~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~-------~~wp-----eli~~L~~~~~s~~~~~~~  152 (861)
T d2bpta1          90 PEAKNQI-----KTNALTALVSIEPRIANAAAQLIAAIADIELPH-------GAWP-----ELMKIMVDNTGAEQPENVK  152 (861)
T ss_dssp             HHHHHHH-----HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG-------TCCH-----HHHHHHHHHTSTTSCHHHH
T ss_pred             HHHHHHH-----HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCc-------CchH-----HHHHHHHHHhcCCCcHHHH
Confidence            2333332     245666776655566666777777765322110       0011     2467777777665445556


Q ss_pred             HHHHHHHHHhhcChh-hHhHHhhc--CCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC-chhH-HHHHhCCcHHHHH
Q 010533          331 ISASIALKAVAVNDE-ICKSVAEN--GGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGS-DSNK-SAIIENGGMDKLI  405 (508)
Q Consensus       331 ~~a~~aL~~La~~~e-~~~~i~e~--Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~-~~~k-~~Iv~~Ggl~~Lv  405 (508)
                      ..+..+|..++..-. ....+...  ..+..++..+..  +..+..+...++.+|.++... +.+- ........++.|.
T Consensus       153 ~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~--~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~  230 (861)
T d2bpta1         153 RASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQS--TETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVC  230 (861)
T ss_dssp             HHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHST--TCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhc--ccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHH
Confidence            667777877764211 11111110  012333333332  223568999999999987642 2111 1111123456777


Q ss_pred             HHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhh
Q 010533          406 VVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA  474 (508)
Q Consensus       406 ~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~  474 (508)
                      ..+.  ..++.++..++.+|..++...++.....+.. .+..+...... ..++.++..++..+..++.
T Consensus       231 ~~~~--~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~-~l~~l~~~~~~-~~~~~v~~~~~~~l~~l~~  295 (861)
T d2bpta1         231 EATQ--AEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQ-ALYALTIATMK-SPNDKVASMTVEFWSTICE  295 (861)
T ss_dssp             HHHT--CSCHHHHHHHHHHHHHHHHHHGGGCHHHHHH-THHHHHHHHTT-CSSHHHHHHHHHHHHHHHH
T ss_pred             HHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc-CccHHHHHHHHHHHHHHHH
Confidence            7887  6789999999999999986555543332222 12233322322 3457788788777766643

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.82  E-value=0.01  Score=46.92  Aligned_cols=88  Identities=10%  Similarity=0.101  Sum_probs=67.2

Q ss_pred             CCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchh
Q 010533          312 GIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSN  391 (508)
Q Consensus       312 g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~  391 (508)
                      .++++|+.+|.+ .++.+...++++|+++...          +.++.|+.+|.+.    ++.|+..++.+|+.+..    
T Consensus        22 ~~~~~L~~~l~d-~~~~vR~~a~~~L~~~~~~----------~~~~~L~~~l~d~----~~~VR~~a~~aL~~i~~----   82 (111)
T d1te4a_          22 EAFEPLLESLSN-EDWRIRGAAAWIIGNFQDE----------RAVEPLIKLLEDD----SGFVRSGAARSLEQIGG----   82 (111)
T ss_dssp             TTHHHHHHGGGC-SCHHHHHHHHHHHGGGCSH----------HHHHHHHHHHHHC----CTHHHHHHHHHHHHHCS----
T ss_pred             HHHHHHHHHHcC-CCHHHHHHHHHHHHhcchh----------hhHHHHHhhhccc----hhHHHHHHHHHHHHhCc----
Confidence            468899998885 4688888999988765422          3478899999863    23899999999998742    


Q ss_pred             HHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHH
Q 010533          392 KSAIIENGGMDKLIVVSARFSDDASVLQEVMSIIT  426 (508)
Q Consensus       392 k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~  426 (508)
                            .+.++.|..+++  ..++.|++.|+.+|-
T Consensus        83 ------~~~~~~L~~ll~--d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          83 ------ERVRAAMEKLAE--TGTGFARKVAVNYLE  109 (111)
T ss_dssp             ------HHHHHHHHHHTT--SCCTHHHHHHHHHGG
T ss_pred             ------cchHHHHHHHHc--CCCHHHHHHHHHHHH
Confidence                  235788888887  667899999988763

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.69  E-value=0.011  Score=46.85  Aligned_cols=88  Identities=15%  Similarity=0.037  Sum_probs=65.8

Q ss_pred             CcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHh
Q 010533          261 KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAV  340 (508)
Q Consensus       261 G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~L  340 (508)
                      .+++.|+..|.+.+..+...|+++|..+..                    .+.++.|+.+|++ .++.+...++.+|+.+
T Consensus        22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--------------------~~~~~~L~~~l~d-~~~~VR~~a~~aL~~i   80 (111)
T d1te4a_          22 EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--------------------ERAVEPLIKLLED-DSGFVRSGAARSLEQI   80 (111)
T ss_dssp             TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------------------HHHHHHHHHHHHH-CCTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcch--------------------hhhHHHHHhhhcc-chhHHHHHHHHHHHHh
Confidence            357889999987777888889998876531                    1357899999986 4788999999999877


Q ss_pred             hcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHH
Q 010533          341 AVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLS  383 (508)
Q Consensus       341 a~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~  383 (508)
                      ..          .+.++.|..++.+.    +..|+..|+.+|.
T Consensus        81 ~~----------~~~~~~L~~ll~d~----~~~vr~~A~~aL~  109 (111)
T d1te4a_          81 GG----------ERVRAAMEKLAETG----TGFARKVAVNYLE  109 (111)
T ss_dssp             CS----------HHHHHHHHHHTTSC----CTHHHHHHHHHGG
T ss_pred             Cc----------cchHHHHHHHHcCC----CHHHHHHHHHHHH
Confidence            43          12467777777653    2389999888874

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.29  E-value=5.6  Score=36.78  Aligned_cols=203  Identities=10%  Similarity=0.082  Sum_probs=138.5

Q ss_pred             HHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHH
Q 010533          256 SYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASI  335 (508)
Q Consensus       256 ~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~  335 (508)
                      .+...+.+..|+..|..-+=+..+.++....+|.+..     .+.....+..+...  -+.|..+++...++++--.+..
T Consensus        64 e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~-----~~~~~p~v~Yl~~~--~eil~~L~~gye~~eiAl~~G~  136 (330)
T d1upka_          64 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQ-----IGTRTPTVEYICTQ--QNILFMLLKGYESPEIALNCGI  136 (330)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCC-----BTTBCHHHHHHHTC--THHHHHHHHGGGSTTTHHHHHH
T ss_pred             HHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcC-----CCCCCccHHHHHcC--HHHHHHHHhhcCCcchhhhhhH
Confidence            4455677888888887655477777777777766432     12222344556532  2444444444334554444444


Q ss_pred             HHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHh-hCCchhHHHHHhCC---cHHHHHHHHhcc
Q 010533          336 ALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKL-AGSDSNKSAIIENG---GMDKLIVVSARF  411 (508)
Q Consensus       336 aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~L-a~~~~~k~~Iv~~G---gl~~Lv~lL~~~  411 (508)
                      .|+.....+..++.|.....+..+.+.++.    ++.+|...|+..++.| ..++..........   ....+-.+|.  
T Consensus       137 mLREcik~e~lak~iL~s~~f~~fF~yv~~----~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~--  210 (330)
T d1upka_         137 MLRECIRHEPLAKIILWSEQFYDFFRYVEM----STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLH--  210 (330)
T ss_dssp             HHHHHHTSHHHHHHHHHSGGGGHHHHHTTC----SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTT--
T ss_pred             HHHHHHhhHHHHHHHHccHHHHHHHHHHcC----CchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhc--
Confidence            566667788889999998887777776654    4679999999999997 56776666666554   3566677887  


Q ss_pred             CCCHHHHHHHHHHHHHHhcCChhhHHHHHhc----CcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhh
Q 010533          412 SDDASVLQEVMSIITVLSLRSPENAARAMEA----GSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA  474 (508)
Q Consensus       412 ~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~----G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~  474 (508)
                      +++--.+++++-.|..|-+ ++.|...+...    .-+..++.+|+.  ++..+|-+|-....-.++
T Consensus       211 s~NYVtrRqSlKLLgelLl-dr~N~~vm~~Yvs~~~nLkl~M~LLrd--~sk~Iq~EAFhVFKvFVA  274 (330)
T d1upka_         211 SENYVTKRQSLKLLGELLL-DRHNFTIMTKYISKPENLKLMMNLLRD--KSRNIQFEAFHVFKVFVA  274 (330)
T ss_dssp             CSSHHHHHHHHHHHHHHHH-SGGGHHHHHHHTTCHHHHHHHHHHTTC--SCHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHh-hhhHHHHHHHHhCCHHHHHHHHHHhcC--chhhHHHHhhhHhhhhhc
Confidence            7889999999999999986 77777765432    235667777754  457899999888777776

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.62  E-value=5.5  Score=37.21  Aligned_cols=129  Identities=11%  Similarity=0.161  Sum_probs=85.8

Q ss_pred             hhHhHHhhcCCHHHHHHHHhccC-------CCCcHHHHHHHHHHHHHhhCCchhHHHHHh-CCcHHHHHHHHhccCCCHH
Q 010533          345 EICKSVAENGGIDALLRCIDDSG-------LQGNKTVARICCSLLSKLAGSDSNKSAIIE-NGGMDKLIVVSARFSDDAS  416 (508)
Q Consensus       345 e~~~~i~e~Ggi~~Lv~lL~~~~-------~~~~~~v~~~al~aL~~La~~~~~k~~Iv~-~Ggl~~Lv~lL~~~~~~~~  416 (508)
                      ...+.+ +.+|+..|+++|..-.       ...+......++.+|+.|..+..+...+++ .+++..|+..|.  ++.+.
T Consensus        37 sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~--s~~~~  113 (343)
T d2bnxa1          37 SWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD--PAVPN  113 (343)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCC--TTSHH
T ss_pred             hHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccC--CCchH
Confidence            445566 4678888888875321       112356888999999999988777666654 567899999997  77899


Q ss_pred             HHHHHHHHHHHHhcCC--hhhHHHHH----------hcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCcc
Q 010533          417 VLQEVMSIITVLSLRS--PENAARAM----------EAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPE  478 (508)
Q Consensus       417 v~e~a~~aL~~La~~~--~~~~~~i~----------~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e  478 (508)
                      ++..|.-.|+.+|.-.  ++....++          +.+-...+++.|+.. .+...+ .+|+.+-|....+++
T Consensus       114 tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~-~~~ey~-~a~m~lIN~li~~~~  185 (343)
T d2bnxa1         114 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG-TSIALK-VGCLQLINALITPAE  185 (343)
T ss_dssp             HHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT-SCHHHH-HHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhcc-ccHHHH-HHHHHHHHHHHcCcc
Confidence            9999999999999532  22222222          234457777777643 344543 466666666544433

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=88.36  E-value=6.3  Score=36.63  Aligned_cols=108  Identities=11%  Similarity=0.101  Sum_probs=57.6

Q ss_pred             HHHHHHHHhcC---CChhHHHHHHHHHHHhhc----ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh
Q 010533          314 ARALVHSLHAG---LSSPSLISASIALKAVAV----NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA  386 (508)
Q Consensus       314 i~~Lv~lL~~~---~d~~~~~~a~~aL~~La~----~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La  386 (508)
                      +..+..+++..   .++.+...+..++++|..    .+..|..    ..++.+.+.+....+..+.+-.-.++.+|+|+-
T Consensus       125 l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~----~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g  200 (336)
T d1lsha1         125 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD----ELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG  200 (336)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcH----HHHHHHHHHHHHhhcccchHHHHHHHHHHhccC
Confidence            45555665532   235455556666665543    3333321    123455555443222223344556677888763


Q ss_pred             CCchhHHHHHhCCcHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHhcCChhh
Q 010533          387 GSDSNKSAIIENGGMDKLIVVSARF-----SDDASVLQEVMSIITVLSLRSPEN  435 (508)
Q Consensus       387 ~~~~~k~~Iv~~Ggl~~Lv~lL~~~-----~~~~~v~e~a~~aL~~La~~~~~~  435 (508)
                       .+         +.++.|...+...     .....++..|+++|..++..+|..
T Consensus       201 -~p---------~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~  244 (336)
T d1lsha1         201 -QP---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK  244 (336)
T ss_dssp             -CG---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH
T ss_pred             -CH---------hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHH
Confidence             33         2355666666421     124678888888888888766643

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.99  E-value=8  Score=35.99  Aligned_cols=153  Identities=14%  Similarity=0.129  Sum_probs=94.1

Q ss_pred             hHHHhcCChHHHHHHHhcC---------CCCHHHHHHHHHHHHHhhcCChhhHHHHH-HcCcHHHHHHHHhcCChHHHHH
Q 010533          211 ETFRTGGGPKLLVNILIDG---------NEDPEILNSGFAVVAASATGNEVVKESYM-ELKIDELILEILSRQRNDSIQS  280 (508)
Q Consensus       211 ~~i~~~ggi~~Lv~lL~~~---------~~~~~v~~~a~~~L~~l~~~~e~nr~~i~-~~G~i~~Lv~lL~~~~~~~~~~  280 (508)
                      ..| ..+|+..|+.+|..-         ..+...+..+++||..++. +......++ ..+++..|+..|.+....+...
T Consensus        40 ~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~  117 (343)
T d2bnxa1          40 QTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMID  117 (343)
T ss_dssp             HHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHH
T ss_pred             HHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhc-cHHHHHHHHcChHHHHHHHHccCCCchHHHHH
Confidence            345 467888888887521         1235678889999998864 455555555 4478999998888766677777


Q ss_pred             HHHHHHHhcCCCcch---hhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcC-hh------hHhHH
Q 010533          281 LYDAIRVLLTPDDDQ---VVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DE------ICKSV  350 (508)
Q Consensus       281 A~~aL~~L~~~dd~r---~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~-~e------~~~~i  350 (508)
                      |...|..+|...++.   ...-.+.++.....+.+-..++++.|+...+.+........+=.|... ++      ....+
T Consensus       118 a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~  197 (343)
T d2bnxa1         118 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSEL  197 (343)
T ss_dssp             HHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHH
Confidence            888898888643221   111123344444556677899999988765554444333333223322 22      23345


Q ss_pred             hhcCCHHHHHHHHhcc
Q 010533          351 AENGGIDALLRCIDDS  366 (508)
Q Consensus       351 ~e~Ggi~~Lv~lL~~~  366 (508)
                      ..+ |+..++.-|+..
T Consensus       198 ~~~-Gl~~il~~l~~~  212 (343)
T d2bnxa1         198 MRL-GLHQVLQELREI  212 (343)
T ss_dssp             HHT-THHHHHHHHTTC
T ss_pred             HHC-ChHHHHHHHHcc
Confidence            555 567777778754