Citrus Sinensis ID: 010538
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 508 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C5X8 | 819 | Molybdenum cofactor sulfu | yes | no | 0.950 | 0.589 | 0.716 | 0.0 | |
| Q8LGM7 | 816 | Molybdenum cofactor sulfu | N/A | no | 0.954 | 0.594 | 0.684 | 0.0 | |
| Q655R6 | 824 | Molybdenum cofactor sulfu | yes | no | 0.935 | 0.576 | 0.663 | 0.0 | |
| Q96EN8 | 888 | Molybdenum cofactor sulfu | yes | no | 0.872 | 0.498 | 0.433 | 1e-102 | |
| Q559G8 | 1007 | Molybdenum cofactor sulfu | yes | no | 0.850 | 0.428 | 0.418 | 1e-101 | |
| Q14CH1 | 862 | Molybdenum cofactor sulfu | yes | no | 0.860 | 0.506 | 0.434 | 1e-100 | |
| Q9N0E7 | 882 | Molybdenum cofactor sulfu | yes | no | 0.872 | 0.502 | 0.426 | 1e-100 | |
| A2VD33 | 831 | Molybdenum cofactor sulfu | yes | no | 0.901 | 0.551 | 0.404 | 3e-97 | |
| Q16P90 | 764 | Molybdenum cofactor sulfu | N/A | no | 0.803 | 0.534 | 0.391 | 4e-87 | |
| Q16GH0 | 764 | Molybdenum cofactor sulfu | N/A | no | 0.799 | 0.531 | 0.389 | 3e-85 |
| >sp|Q9C5X8|MOCOS_ARATH Molybdenum cofactor sulfurase OS=Arabidopsis thaliana GN=ABA3 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/484 (71%), Positives = 405/484 (83%), Gaps = 1/484 (0%)
Query: 7 EEFLKEFGEDYGYPNAPKSIDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTT 66
E FLKEFG+ YGYP+ PK+I +IR TEFKRL+ G VYLDHAG+TLYSELQME IF+DFT+
Sbjct: 2 EAFLKEFGDYYGYPDGPKNIQEIRDTEFKRLDKGVVYLDHAGSTLYSELQMEYIFKDFTS 61
Query: 67 NVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWS 126
NV+GNPHSQSDIS AT D++ AR QVL+YFNAS +DY C+FTSGATAALKLVGE FPW+
Sbjct: 62 NVFGNPHSQSDISSATSDLIADARHQVLEYFNASPEDYSCLFTSGATAALKLVGETFPWT 121
Query: 127 HQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQR 186
S+++YTMENHNSVLGIREYAL+QGA+A A+D+EEA + G + S K+ +Q
Sbjct: 122 QDSNFLYTMENHNSVLGIREYALAQGASACAVDIEEAANQPGQLTNSGPSIKVKHRAVQM 181
Query: 187 RKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG-RWM 245
R + + + G+AYNLFAFPSECNFSG RFNLDL+ +MK+N E +L+ SPFSK RWM
Sbjct: 182 RNTSKLQKEESRGNAYNLFAFPSECNFSGLRFNLDLVKLMKENTETVLQGSPFSKSKRWM 241
Query: 246 VLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGT 305
VLIDAAKGC T PPDLS+YP DFVV+SFYK+FGYPTGLGAL++RNDAAKLLK TYFSGGT
Sbjct: 242 VLIDAAKGCATLPPDLSEYPADFVVLSFYKLFGYPTGLGALLVRNDAAKLLKKTYFSGGT 301
Query: 306 VAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYV 365
VAASIADIDFVKRR+ VEE FEDG+ASFLSIA+IRHGF L+ SLT AI H SL +YV
Sbjct: 302 VAASIADIDFVKRRERVEEFFEDGSASFLSIAAIRHGFKLLKSLTPSAIWMHTTSLSIYV 361
Query: 366 RKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSG 425
+K L +LRH NGA VC +YG+ E+S H +G V+FNLKRPDGSWFGY EVEKLASLSG
Sbjct: 362 KKKLQALRHGNGAAVCVLYGSENLELSSHKSGPTVTFNLKRPDGSWFGYLEVEKLASLSG 421
Query: 426 IQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTF 485
IQLRTGCFCNPGACAKYL LSHS+L SN+EAGH+CWDDND+I+GKPTGA+RVSFGYMSTF
Sbjct: 422 IQLRTGCFCNPGACAKYLELSHSELRSNVEAGHICWDDNDVINGKPTGAVRVSFGYMSTF 481
Query: 486 EDAK 489
EDAK
Sbjct: 482 EDAK 485
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Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Modulates cold stress- and osmotic stress-responsive gene expression by acting as key regulator of abscisic acid (ABA) biosynthesis. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 8EC: .EC: 1EC: .EC: 9 |
| >sp|Q8LGM7|MOCOS_SOLLC Molybdenum cofactor sulfurase OS=Solanum lycopersicum GN=FLACCA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/500 (68%), Positives = 403/500 (80%), Gaps = 15/500 (3%)
Query: 4 ADKEEFLKEFGEDYGYPNAPKSIDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRD 63
++KE+FLKEFG YGY N+PK+ID+IRATEFKRL N TVYLDHAGATLYSE QMEA+F+D
Sbjct: 5 SEKEQFLKEFGSYYGYANSPKNIDEIRATEFKRL-NDTVYLDHAGATLYSESQMEAVFKD 63
Query: 64 FTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAF 123
+ +YGNPHSQS SLAT DIV AR+QVL +FNAS ++Y CIFTSGATAALKLVGE F
Sbjct: 64 LNSTLYGNPHSQSTCSLATEDIVGKARQQVLSFFNASPREYSCIFTSGATAALKLVGETF 123
Query: 124 PWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLP 183
PWS SS+MY+MENHNSVLGIREYALS+GAAAFA+D+E+ + G SES ++ K++
Sbjct: 124 PWSSNSSFMYSMENHNSVLGIREYALSKGAAAFAVDIEDT--HVGESESPQSNLKLTQHH 181
Query: 184 IQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGR 243
IQRR + G+ YNLFAFPSECNFSG +F+ +LI I+K+ ERILE S +S+G
Sbjct: 182 IQRRNEGGVLKEGMTGNTYNLFAFPSECNFSGRKFDPNLIKIIKEGSERILESSQYSRGC 241
Query: 244 WMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSG 303
W+VLIDAAKGC T PP+LS + DFVV SFYK+FGYPTGLGALI+R DAAKL+K TYFSG
Sbjct: 242 WLVLIDAAKGCATNPPNLSMFKADFVVFSFYKLFGYPTGLGALIVRKDAAKLMKKTYFSG 301
Query: 304 GTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGM 363
GTV A+IAD+DF KRR+GVEE FEDGT SFLSI +I+HGF +IN LT +I RH S+
Sbjct: 302 GTVTAAIADVDFFKRREGVEEFFEDGTISFLSITAIQHGFKIINMLTTSSIFRHTTSIAA 361
Query: 364 YVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASL 423
YVR LL+L+HENG VCT+YG +SE+ G VSFN+KRPDG+W+GYREVEKLA+L
Sbjct: 362 YVRNKLLALKHENGEFVCTLYGLLSSEM-----GPTVSFNMKRPDGTWYGYREVEKLATL 416
Query: 424 SGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMS 483
+GIQLRTGCFCNPGACAKYLGLSH DLLSNIEAGHVCWDD DI+HGKPTGA+RVSFGYMS
Sbjct: 417 AGIQLRTGCFCNPGACAKYLGLSHLDLLSNIEAGHVCWDDRDILHGKPTGAVRVSFGYMS 476
Query: 484 TFEDAKVNRCSSFDFVNFSQ 503
TFEDA FVNF +
Sbjct: 477 TFEDA-------MKFVNFVE 489
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Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Solanum lycopersicum (taxid: 4081) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q655R6|MOCOS_ORYSJ Molybdenum cofactor sulfurase OS=Oryza sativa subsp. japonica GN=MCSU3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/493 (66%), Positives = 381/493 (77%), Gaps = 18/493 (3%)
Query: 6 KEEFLKEFGEDYGYPNAPKSIDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFT 65
KEEFL++FG DYGYP APK +D++RA EFKRLE G YLDHAGATLYSE QM + +D
Sbjct: 5 KEEFLRQFGGDYGYPGAPKGVDEMRAAEFKRLE-GMAYLDHAGATLYSEAQMADVLKDLA 63
Query: 66 TNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPW 125
+NVYGNPHSQSD S+A D+V AAR QVL YFNAS ++YKCIFTSGATAALKLVGE FPW
Sbjct: 64 SNVYGNPHSQSDSSMAASDLVTAARHQVLKYFNASPREYKCIFTSGATAALKLVGECFPW 123
Query: 126 SHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVD--NDGLSESLVTSTKISLLP 183
S +S YMYTMENHNSVLGIREYALS+GA A+DVEE D D S SL KIS
Sbjct: 124 SRESCYMYTMENHNSVLGIREYALSKGATVLAVDVEEGADLAKDNGSYSLY---KISRRT 180
Query: 184 IQRRKGASFPER-------DPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEI 236
QRR D +G+ +N+FAFPSECNFSG +F+L L+ ++K+ +I
Sbjct: 181 NQRRSKDVLSHNCQNGSLSDISGNNWNIFAFPSECNFSGQKFSLSLVKLIKEG-----KI 235
Query: 237 SPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLL 296
+G+WMVLIDAAKGC T+PP+L+ YP DFVV SFYKIFGYPTGLGALI++N+AA LL
Sbjct: 236 PLQQQGKWMVLIDAAKGCATEPPNLTVYPADFVVCSFYKIFGYPTGLGALIVKNEAANLL 295
Query: 297 KNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICR 356
TYFSGGTVAASIADIDFV++R+ +E++ EDGT SFL+IAS+RHGF +I LT AI R
Sbjct: 296 NKTYFSGGTVAASIADIDFVQKRKNIEQVLEDGTISFLNIASLRHGFKIIEMLTTSAIER 355
Query: 357 HIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYRE 416
H SL YVR +L L+H N +VCTIYG S+V G ++FNLKR DGSWFGYRE
Sbjct: 356 HTTSLATYVRNKMLDLKHSNEINVCTIYGQQYSKVEGLKMGPTITFNLKREDGSWFGYRE 415
Query: 417 VEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIR 476
VEKLASL GI LRTGCFCNPGACAKYLGLSHSDL+SN EAGHVCWDDNDII+GKPTGA+R
Sbjct: 416 VEKLASLFGIHLRTGCFCNPGACAKYLGLSHSDLVSNFEAGHVCWDDNDIINGKPTGAVR 475
Query: 477 VSFGYMSTFEDAK 489
+SFGYMSTFEDA+
Sbjct: 476 ISFGYMSTFEDAE 488
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Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q96EN8|MOCOS_HUMAN Molybdenum cofactor sulfurase OS=Homo sapiens GN=MOCOS PE=1 SV=2 | Back alignment and function description |
|---|
Score = 374 bits (960), Expect = e-102, Method: Compositional matrix adjust.
Identities = 209/482 (43%), Positives = 293/482 (60%), Gaps = 39/482 (8%)
Query: 17 YGYPNAPKSIDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQS 76
YGY P S+ ++RA EF RL GTVYLDHAGATL+S+ Q+E+ D N YGNPHSQ+
Sbjct: 28 YGY--GPGSLRELRAREFSRLA-GTVYLDHAGATLFSQSQLESFTSDLMENTYGNPHSQN 84
Query: 77 DISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQ------SS 130
S T D V R ++L +F+ + +DY IFT+G+TAALKLV EAFPW Q S
Sbjct: 85 ISSKLTHDTVEQVRYRILAHFHTTAEDYTVIFTAGSTAALKLVAEAFPWVSQGPESSGSR 144
Query: 131 YMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGA 190
+ Y ++H SV+G+R ++ + + E+ + +R A
Sbjct: 145 FCYLTDSHTSVVGMRNVTMAINVISTPVRPEDLWSAE-----------------ERSASA 187
Query: 191 SFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDA 250
S +P +LF +P++ NFSG R+ L I +K R+ +S + G+W VL+DA
Sbjct: 188 S----NPDCQLPHLFCYPAQSNFSGVRYPLSWIEEVKSG--RLHPVS--TPGKWFVLLDA 239
Query: 251 AKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASI 310
A T P DLS + DFV +SFYKIFG+PTGLGAL++ N AA LL+ TYF GGT +A +
Sbjct: 240 ASYVSTSPLDLSAHQADFVPISFYKIFGFPTGLGALLVHNRAAPLLRKTYFGGGTASAYL 299
Query: 311 ADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLT--VPAICRHIASLGMYVRKV 368
A DF RQ V + FEDGT SFL + +++HGF+ + LT + I +H +L Y
Sbjct: 300 AGEDFYIPRQSVAQRFEDGTISFLDVIALKHGFDTLERLTGGMENIKQHTFTLAQYTYVA 359
Query: 369 LLSLRHENGADVCTIYGTYTSEVSYHDT-GSMVSFNLKRPDGSWFGYREVEKLASLSGIQ 427
L SL++ NGA V IY SE S + G +++FN+ G+ GY +V+K+ASL I
Sbjct: 360 LSSLQYPNGAPVVRIYS--DSEFSSPEVQGPIINFNVLDDKGNIIGYSQVDKMASLYNIH 417
Query: 428 LRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFED 487
LRTGCFCN GAC ++LG+S+ + + +AGHVC D+ D+I G+PTG++R+SFGYMST +D
Sbjct: 418 LRTGCFCNTGACQRHLGISNEMVRKHFQAGHVCGDNMDLIDGQPTGSVRISFGYMSTLDD 477
Query: 488 AK 489
+
Sbjct: 478 VQ 479
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Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. In vitro, the C-terminal domain is able to reduces N-hydroxylated prodrugs, such as benzamidoxime. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q559G8|MOCOS_DICDI Molybdenum cofactor sulfurase OS=Dictyostelium discoideum GN=mocos PE=3 SV=2 | Back alignment and function description |
|---|
Score = 370 bits (949), Expect = e-101, Method: Compositional matrix adjust.
Identities = 210/502 (41%), Positives = 300/502 (59%), Gaps = 70/502 (13%)
Query: 30 RATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAA 89
+ +F +L++ VYLDHA +TL S Q+E I ++ +++ NPHS + I L T + V +
Sbjct: 135 KDDQFPKLKD-IVYLDHAASTLASMNQIEEISKELKNSMFCNPHSVNPIGLKTKEEVDSI 193
Query: 90 REQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYAL 149
RE +L+YFNA + Y IFTSG T +LK VGE F W+ S + Y++E+HNS+LGIREYA
Sbjct: 194 RENILNYFNAPYRQYSVIFTSGCTDSLKKVGEYFAWTKNSKFYYSLESHNSLLGIREYA- 252
Query: 150 SQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQ----RRKGASFPE--------RDP 197
ES+ S+ S PI + F + D
Sbjct: 253 --------------------CESIGGSSTTSFQPIPSLYFKCNNNQFNDILEIIGNNDDN 292
Query: 198 AGDAYNLFAFPSECNFSGSRFNLDLIN-IMKKNPERILEISPFSKGRWMVLIDAAKGCVT 256
++Y+LF +P +CN+SG+++ L+LIN I KK P + VL+DAA T
Sbjct: 293 NNESYSLFGYPGQCNYSGTKYPLELINRIQKKYP------------KCKVLLDAASLVST 340
Query: 257 QPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAK--LLKNTYFSGGTVAASIADID 314
DL+KYPVDF+ +SFYK+FGYPTG+GALI++ND+ + L+ YFSGGTV S+A
Sbjct: 341 SSFDLTKYPVDFMTISFYKMFGYPTGIGALIVKNDSGEKCLINKKYFSGGTVNVSMAQER 400
Query: 315 FVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLT--VPAICRHIASLGMYVRKVLLSL 372
F R + E EDGT +F++I S++HGFN+IN+ + + H SL Y ++ +L L
Sbjct: 401 FHVDRPSLSERLEDGTINFMNIISLKHGFNIINNQLGGIDNVKLHTFSLTQYCKEEMLKL 460
Query: 373 RHENGA---DVCTIYGTYTSEVSYHDT---GSMVSFNLKRPDGSWFGYREVEKLASLSGI 426
H + + +C IY S+ + D+ GS+++FN+ R +G FGY +VEKLASLS I
Sbjct: 461 YHSDNSKQQQLCIIY----SDNHFKDSSKQGSIINFNIFRSNGELFGYNQVEKLASLSSI 516
Query: 427 QLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFE 486
LRTGCFCNPGAC YL LS D+ +++ GHVCWD DI++GKPTG++R+SFGYM+ F
Sbjct: 517 YLRTGCFCNPGACHGYLNLSKKDIEQHLKDGHVCWDSKDILNGKPTGSVRISFGYMNNFN 576
Query: 487 DAKVNRCSSFDFVNF--SQFLN 506
D + F+NF S F+N
Sbjct: 577 DV-------YKFINFLKSNFIN 591
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Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q14CH1|MOCOS_MOUSE Molybdenum cofactor sulfurase OS=Mus musculus GN=Mocos PE=2 SV=1 | Back alignment and function description |
|---|
Score = 367 bits (942), Expect = e-100, Method: Compositional matrix adjust.
Identities = 207/476 (43%), Positives = 282/476 (59%), Gaps = 39/476 (8%)
Query: 24 KSIDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATC 83
+S+ ++R EF RL GTVYLDHAGATL+ + Q+ +D NVYGNPHSQ+ S T
Sbjct: 33 RSMSELRDQEFGRLA-GTVYLDHAGATLFPQSQLTNFTKDLMENVYGNPHSQNITSKLTH 91
Query: 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSS------YMYTMEN 137
D V R ++L +F+ + +DY IFT+G+TAAL+LV EAFPW +S + Y +N
Sbjct: 92 DTVEQVRYRILTHFHTTPEDYIVIFTAGSTAALRLVAEAFPWVSRSPENSGSHFCYLTDN 151
Query: 138 HNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP 197
H SV+G+R+ A + + + E+ +G + GA DP
Sbjct: 152 HTSVVGMRKVAAAMSVTSIPVKPEDMWSAEG-----------------KDAGAC----DP 190
Query: 198 AGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPF-SKGRWMVLIDAAKGCVT 256
+LF +P++ NFSG+R+ L + +K SP + G+W VL+DAA T
Sbjct: 191 DCQLPHLFCYPAQSNFSGTRYPLSWVEEVKSG-----RRSPVNAPGKWFVLLDAASYVST 245
Query: 257 QPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFV 316
P DLS + DF+ +SFYKIFG PTGLGAL++ A LL+ YF GGT AA +A DF
Sbjct: 246 SPLDLSAHQADFIPISFYKIFGLPTGLGALLVNKHVAPLLRKGYFGGGTAAAYLAGEDFY 305
Query: 317 KRRQGVEELFEDGTASFLSIASIRHGFNLINSLT--VPAICRHIASLGMYVRKVLLSLRH 374
R V E FEDGT SFL + +++HGF+ + LT + I +H +L Y L SLR+
Sbjct: 306 VPRSSVAERFEDGTISFLDVIALKHGFDALEHLTGGMVNIQQHTFALVQYTHSALSSLRY 365
Query: 375 ENGADVCTIYGTYTSEVSYHDT-GSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCF 433
NGA V IY SE S D G +++FN+ G GY +V+K+ASL I LRTGCF
Sbjct: 366 LNGAPVVRIYS--DSEFSSPDVQGPIINFNVLDDGGKIIGYSQVDKMASLYNIHLRTGCF 423
Query: 434 CNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAK 489
CN GAC ++LGLS + + +AGHVC DD DII G+PTG++R+SFGYMST EDA+
Sbjct: 424 CNLGACQRHLGLSDEMVKKHFQAGHVCGDDVDIIDGRPTGSVRISFGYMSTLEDAQ 479
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Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q9N0E7|MOCOS_BOVIN Molybdenum cofactor sulfurase OS=Bos taurus GN=MOCOS PE=2 SV=2 | Back alignment and function description |
|---|
Score = 366 bits (940), Expect = e-100, Method: Compositional matrix adjust.
Identities = 206/483 (42%), Positives = 287/483 (59%), Gaps = 40/483 (8%)
Query: 17 YGYPNAPKSIDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQS 76
YGY ++ ++RA EF RL GTVYLDHAG TL+ + Q+ + +D NVYGNPHSQ+
Sbjct: 28 YGYGRG--TLHELRAREFGRLA-GTVYLDHAGTTLFPQSQITSFMKDLMENVYGNPHSQN 84
Query: 77 DISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPW------SHQSS 130
S T D V R ++L +F+ S +DY IFTSG+TAALKLV EAFPW S
Sbjct: 85 ISSKLTHDTVEQVRFRILAHFHTSPEDYTVIFTSGSTAALKLVAEAFPWVSPGPEGSGSC 144
Query: 131 YMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGA 190
+ Y ++H SV+G+R+ + ++ + E+ + +
Sbjct: 145 FCYLTDSHTSVVGMRKITAAMNVSSIPVRPEDMWSAERQDAAAAGDPAGQ---------- 194
Query: 191 SFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK-GRWMVLID 249
+LF +P++ NFSG+R+ L I +K R P S+ G+W VL+D
Sbjct: 195 ----------PPHLFCYPAQSNFSGTRYPLSWIGEVKSGRRR-----PASRPGKWFVLLD 239
Query: 250 AAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAAS 309
AA T P DLS + DFV +SFYKIFG+PTGLGAL++ N A LL+ TYF GGT AA
Sbjct: 240 AAAFVGTSPLDLSVHQADFVPISFYKIFGFPTGLGALLVNNRLAALLRKTYFGGGTAAAY 299
Query: 310 IADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLT--VPAICRHIASLGMYVRK 367
+A DF R+ V E FEDGT SFL + +++HGF+ + LT + +I +H +L Y
Sbjct: 300 LAGDDFYVPRESVAERFEDGTISFLDVIALKHGFDALERLTGGMESIRQHTFTLAQYTYT 359
Query: 368 VLLSLRHENGADVCTIYGTYTSEVSYHDT-GSMVSFNLKRPDGSWFGYREVEKLASLSGI 426
L SLR+ NGA V IY S+ S + G ++SFN+ G+ GY +V+K+ASL I
Sbjct: 360 ALSSLRYPNGAPVVQIYS--DSDFSSPEVQGPVISFNVLDDHGNVVGYSQVDKMASLHNI 417
Query: 427 QLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFE 486
+RTGCFCN GAC ++LG+S + +++AGHVC DD D+I G+PTG++R+SFGYMST E
Sbjct: 418 HVRTGCFCNTGACQRHLGISDEMVKKHLQAGHVCGDDVDLIDGQPTGSVRISFGYMSTLE 477
Query: 487 DAK 489
DA+
Sbjct: 478 DAQ 480
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|A2VD33|MOCOS_DANRE Molybdenum cofactor sulfurase OS=Danio rerio GN=mocos PE=2 SV=2 | Back alignment and function description |
|---|
Score = 356 bits (913), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 203/502 (40%), Positives = 289/502 (57%), Gaps = 44/502 (8%)
Query: 1 MDYADKEEF--LKEFGEDYGYPNAPKS-IDQIRATEFKRLENGTVYLDHAGATLYSELQM 57
D+ D F K FG YGY ++ IDQ EFKR++ G YLDHAG TL+ E +
Sbjct: 7 QDFQDLCTFDVFKSFGHYYGYGVDQQALIDQ----EFKRIK-GVTYLDHAGTTLFPESLI 61
Query: 58 EAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALK 117
+ D + NVYGNPHS + S T D V + R ++L +FN S +DY IFTSG TAALK
Sbjct: 62 KGFHDDISRNVYGNPHSHNSSSRLTHDTVESVRYKILAHFNTSPEDYSVIFTSGCTAALK 121
Query: 118 LVGEAFPWSHQSS------YMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSE 171
LV + FPW S+ + Y +NH SV+GIR QG ++ E V+ ++
Sbjct: 122 LVADTFPWKPMSNKEPGSQFCYLTDNHTSVVGIRGATALQGVGTISVSPRE-VETRARNK 180
Query: 172 SLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPE 231
+ + P +LF +P++ NFSG +++L + ++
Sbjct: 181 TQTNGEEECSTP-------------------HLFCYPAQSNFSGRKYSLSYVKGIQSQ-- 219
Query: 232 RILEISPFSK--GRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMR 289
++ P + G+W VL+DAA P DLS+YP DFV +SFYK+FG+PTGLGAL++R
Sbjct: 220 ---QLYPACEHHGQWFVLLDAACFVSCSPLDLSQYPADFVPISFYKMFGFPTGLGALLVR 276
Query: 290 NDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSL 349
N+AA++L+ TYF GGT AA + + ++ + + FEDGT SFL I S+ HGF + L
Sbjct: 277 NEAAEVLRKTYFGGGTAAAYLVEENYFIPKPNLASRFEDGTISFLDIISLHHGFETLQKL 336
Query: 350 T--VPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRP 407
T + I H L Y VL L H NG V IY + S + G++++F+L
Sbjct: 337 TGSMTNIQLHTFGLARYTYTVLSCLCHSNGKHVAQIYCDNDFQ-SIAEQGAIINFSLLDC 395
Query: 408 DGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDII 467
G GY +V+K+ASL I +RTGCFCN GAC YL +S+ ++ SN+ AGH+C D+ D++
Sbjct: 396 HGRTVGYSQVDKMASLFNIHIRTGCFCNTGACQHYLAISNQNVKSNLHAGHICGDNIDLV 455
Query: 468 HGKPTGAIRVSFGYMSTFEDAK 489
G+PTG++RVSFGYMS+FED +
Sbjct: 456 DGRPTGSLRVSFGYMSSFEDCQ 477
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Danio rerio (taxid: 7955) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q16P90|MOCO3_AEDAE Molybdenum cofactor sulfurase 3 OS=Aedes aegypti GN=mal3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 322 bits (826), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 185/473 (39%), Positives = 268/473 (56%), Gaps = 65/473 (13%)
Query: 33 EFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQ 92
EF RL+ YLDHAG TLY++ Q+ ++ N+Y NPH+ S T D++ R +
Sbjct: 22 EFSRLKE-KCYLDHAGTTLYADSQIRSVCEGLAQNLYCNPHT----SRTTEDLLDQVRYR 76
Query: 93 VLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQG 152
VL +FN +Y IFTSG TA+LKL+ E++ ++ + +++Y ++H SVLG+RE
Sbjct: 77 VLRHFNTRSSEYSLIFTSGTTASLKLLAESYEFAPEGAFVYLKDSHTSVLGMRE------ 130
Query: 153 AAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYN--LFAFPSE 210
+V + +I P++R + + D+ + L FP++
Sbjct: 131 --------------------IVGTERI--YPVEREQLLKELDSSERSDSEHSSLIVFPAQ 168
Query: 211 CNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVV 270
CNF+G ++ L+L+ +++N IS + K R+ V +DAA T DLSKY DFV
Sbjct: 169 CNFNGVKYPLELVRKIQRNG-----ISGYGKERFRVCLDAASFVSTSFLDLSKYQPDFVC 223
Query: 271 MSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGT 330
+SFYKIFGYPTGLGAL++ + AA L+ Y+ GGTV ++A +F +R + E FEDGT
Sbjct: 224 LSFYKIFGYPTGLGALLVHHTAADQLRKKYYGGGTVKIAMAGRNFHVKRDPLVERFEDGT 283
Query: 331 ASFLSIASIRHGFNLINSL--------TVPAICRHIASLGMYVRKVLLSLRHENGADVCT 382
+F SI ++ GF + L T+ I + LG Y L +LRH NG V
Sbjct: 284 LAFTSIIALLQGFETLERLVPSTAGLRTIERISQQTFHLGRYCYNRLKALRHSNGNAVVK 343
Query: 383 IYGTYTSEVSYHDTG--------SMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFC 434
+Y HDTG +V+FN+ DG++ G+ EV +ASL I LRTGCFC
Sbjct: 344 LY---------HDTGFEDQGLQGGIVNFNILHEDGTYVGFAEVSYMASLHNILLRTGCFC 394
Query: 435 NPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFED 487
NPGAC ++L LS D+L +AGHVC D ND+I G+PTG++RVSFGYM+ ED
Sbjct: 395 NPGACQRHLQLSDEDVLKQFDAGHVCGDANDLIDGQPTGSVRVSFGYMTRKED 447
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Aedes aegypti (taxid: 7159) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q16GH0|MOCO1_AEDAE Molybdenum cofactor sulfurase 1 OS=Aedes aegypti GN=mal1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 316 bits (810), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 185/475 (38%), Positives = 267/475 (56%), Gaps = 69/475 (14%)
Query: 33 EFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQ 92
EF RL+ YLDHAG TLY++ Q+ ++ N+Y NPH+ S T D++ R +
Sbjct: 22 EFSRLKE-KCYLDHAGTTLYADSQIRSVCEGLAQNLYCNPHT----SRTTEDLLDQVRYR 76
Query: 93 VLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQG 152
VL +FN +Y IFTSG TA+LKL+ E+F ++ + +++Y ++H SVLG+RE
Sbjct: 77 VLRHFNTRSSEYSLIFTSGTTASLKLLAESFEFAPEGAFVYLKDSHTSVLGMRE------ 130
Query: 153 AAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYN----LFAFP 208
+V + +I P++R + E D + + N L FP
Sbjct: 131 --------------------IVGTERI--YPVEREQ--LLKELDSSERSDNEHSSLIVFP 166
Query: 209 SECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDF 268
++CNF+G ++ L+L+ ++++ IS + K R+ V +DAA T DLSKY DF
Sbjct: 167 AQCNFNGVKYPLELVRKIQRDG-----ISGYGKERFRVCLDAASFVSTSFLDLSKYQPDF 221
Query: 269 VVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFED 328
V +SFYKIFGYPTGLGAL++ + AA L+ Y+ GGTV ++A F +R + E FED
Sbjct: 222 VCLSFYKIFGYPTGLGALLVHHTAADQLRKKYYGGGTVKIAMAGRIFHVKRDPLVERFED 281
Query: 329 GTASFLSIASIRHGFNLINSL--------TVPAICRHIASLGMYVRKVLLSLRHENGADV 380
GT +F SI ++ GF + L T+ I + +G Y L +LRH N V
Sbjct: 282 GTLAFTSIIALLQGFETLERLVPSTAGLRTIERISQQTFHIGRYCYNRLKALRHSNENAV 341
Query: 381 CTIYGTYTSEVSYHDTG--------SMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGC 432
+Y HDTG +V+FN+ DG++ G+ EV +ASL I LRTGC
Sbjct: 342 VKLY---------HDTGFEDRGLQGGIVNFNILHEDGTYVGFAEVSYMASLHNILLRTGC 392
Query: 433 FCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFED 487
FCNPGAC ++L LS D+L +AGHVC D ND+I G+PTG++RVSFGYM+ ED
Sbjct: 393 FCNPGACQRHLQLSDEDVLKQFDAGHVCGDANDLIDGQPTGSVRVSFGYMTRKED 447
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Aedes aegypti (taxid: 7159) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 508 | ||||||
| 296875334 | 560 | MoCo sulfurase [Citrus sinensis] | 0.962 | 0.873 | 0.981 | 0.0 | |
| 296082731 | 824 | unnamed protein product [Vitis vinifera] | 0.952 | 0.587 | 0.767 | 0.0 | |
| 359494541 | 827 | PREDICTED: molybdenum cofactor sulfurase | 0.952 | 0.585 | 0.765 | 0.0 | |
| 255544672 | 810 | molybdopterin cofactor sulfurase, putati | 0.921 | 0.577 | 0.730 | 0.0 | |
| 356531742 | 815 | PREDICTED: molybdenum cofactor sulfurase | 0.952 | 0.593 | 0.731 | 0.0 | |
| 449464652 | 797 | PREDICTED: molybdenum cofactor sulfurase | 0.954 | 0.608 | 0.723 | 0.0 | |
| 449502500 | 797 | PREDICTED: molybdenum cofactor sulfurase | 0.954 | 0.608 | 0.721 | 0.0 | |
| 18394375 | 819 | Molybdenum cofactor sulfurase [Arabidops | 0.950 | 0.589 | 0.716 | 0.0 | |
| 297844580 | 821 | ABA3/ATABA3/LOS5/SIR3 [Arabidopsis lyrat | 0.950 | 0.588 | 0.706 | 0.0 | |
| 357470231 | 927 | Molybdenum cofactor sulfurase [Medicago | 0.944 | 0.517 | 0.667 | 0.0 |
| >gi|296875334|gb|ADH82120.1| MoCo sulfurase [Citrus sinensis] | Back alignment and taxonomy information |
|---|
Score = 998 bits (2579), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/489 (98%), Positives = 481/489 (98%)
Query: 1 MDYADKEEFLKEFGEDYGYPNAPKSIDQIRATEFKRLENGTVYLDHAGATLYSELQMEAI 60
MDYADKEEFLKEFGEDYGYPN PKSIDQIRATEFKRLENGTVYLDHAGATLYSELQMEAI
Sbjct: 1 MDYADKEEFLKEFGEDYGYPNXPKSIDQIRATEFKRLENGTVYLDHAGATLYSELQMEAI 60
Query: 61 FRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVG 120
RDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVG
Sbjct: 61 XRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVG 120
Query: 121 EAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKIS 180
EAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSE LVTSTKIS
Sbjct: 121 EAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSEGLVTSTKIS 180
Query: 181 LLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFS 240
L PIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDL NIMKKNPE ILEISPFS
Sbjct: 181 LHPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLXNIMKKNPEXILEISPFS 240
Query: 241 KGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTY 300
KGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTY
Sbjct: 241 KGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTY 300
Query: 301 FSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIAS 360
FSGGTVAASIADIDFVKRRQGVEELFEDG+ASFLSIASIRHGFNLINSLTVPAICRHIAS
Sbjct: 301 FSGGTVAASIADIDFVKRRQGVEELFEDGSASFLSIASIRHGFNLINSLTVPAICRHIAS 360
Query: 361 LGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKL 420
LGMYVRKVLLSLRHENGADVCTIY TYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKL
Sbjct: 361 LGMYVRKVLLSLRHENGADVCTIYATYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKL 420
Query: 421 ASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFG 480
ASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAG VCWDDNDIIHGKPTGAIRVSFG
Sbjct: 421 ASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGRVCWDDNDIIHGKPTGAIRVSFG 480
Query: 481 YMSTFEDAK 489
YMSTFEDAK
Sbjct: 481 YMSTFEDAK 489
|
Source: Citrus sinensis Species: Citrus sinensis Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296082731|emb|CBI21736.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/485 (76%), Positives = 423/485 (87%), Gaps = 1/485 (0%)
Query: 5 DKEEFLKEFGEDYGYPNAPKSIDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDF 64
DKE FL+EFG DYGYP+AP +IDQIRA++FKRL+ G VYLDHAG+TLYSE QMEA+ D
Sbjct: 4 DKEAFLREFGNDYGYPSAPFNIDQIRASQFKRLD-GLVYLDHAGSTLYSESQMEAVLNDL 62
Query: 65 TTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFP 124
TT+VYGNPHSQSD SLATCDIVR AR+QVLD+ NAS KDYKCIFTSGATAALKLVGEAFP
Sbjct: 63 TTSVYGNPHSQSDTSLATCDIVREARQQVLDHCNASPKDYKCIFTSGATAALKLVGEAFP 122
Query: 125 WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPI 184
WS +S++MYTMENHNSVLGIREYAL +GA+AFAID+EEA + G+S + +S K+S PI
Sbjct: 123 WSSESNFMYTMENHNSVLGIREYALDRGASAFAIDIEEAGHHGGVSRNTSSSIKVSPRPI 182
Query: 185 QRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRW 244
QRR A FP P G A+NLFAFPSECNFSG RF+LDL+ I+K++ ERIL PF KG W
Sbjct: 183 QRRNQARFPGEAPTGYAHNLFAFPSECNFSGVRFSLDLVKIIKEDAERILTGPPFYKGCW 242
Query: 245 MVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGG 304
MVLIDAAKGC T+PPDLSKYP DFVV+SFYK+FGYPTGLGALI+R++AAKLLK TYFSGG
Sbjct: 243 MVLIDAAKGCATKPPDLSKYPADFVVISFYKLFGYPTGLGALIVRSEAAKLLKKTYFSGG 302
Query: 305 TVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMY 364
TVAASIADIDFVKRR +EELFEDGTASFLSIASIRHGF L+N++T+ AI RH + L Y
Sbjct: 303 TVAASIADIDFVKRRNDIEELFEDGTASFLSIASIRHGFKLLNTITISAISRHTSLLSTY 362
Query: 365 VRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLS 424
VRK LL+LRH+NG+ VC +YG ++SE ++ G +V+FNLKRPDGSWFGYREVEKLASLS
Sbjct: 363 VRKQLLALRHDNGSGVCMLYGGFSSEKLCNEMGPIVTFNLKRPDGSWFGYREVEKLASLS 422
Query: 425 GIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMST 484
IQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGA+RVSFGYMST
Sbjct: 423 RIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAVRVSFGYMST 482
Query: 485 FEDAK 489
FEDAK
Sbjct: 483 FEDAK 487
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359494541|ref|XP_003634800.1| PREDICTED: molybdenum cofactor sulfurase-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/487 (76%), Positives = 425/487 (87%), Gaps = 3/487 (0%)
Query: 5 DKEEFLKEFGEDYGYPNAPKSIDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDF 64
DKE FL+EFG DYGYP+AP +IDQIRA++FKRL+ G VYLDHAG+TLYSE QMEA+ D
Sbjct: 4 DKEAFLREFGNDYGYPSAPFNIDQIRASQFKRLD-GLVYLDHAGSTLYSESQMEAVLNDL 62
Query: 65 TTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFP 124
TT+VYGNPHSQSD SLATCDIVR AR+QVLD+ NAS KDYKCIFTSGATAALKLVGEAFP
Sbjct: 63 TTSVYGNPHSQSDTSLATCDIVREARQQVLDHCNASPKDYKCIFTSGATAALKLVGEAFP 122
Query: 125 WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPI 184
WS +S++MYTMENHNSVLGIREYAL +GA+AFAID+EEA + G+S + +S K+S PI
Sbjct: 123 WSSESNFMYTMENHNSVLGIREYALDRGASAFAIDIEEAGHHGGVSRNTSSSIKVSPRPI 182
Query: 185 QRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRW 244
QRR A FP P G A+NLFAFPSECNFSG RF+LDL+ I+K++ ERIL PF KG W
Sbjct: 183 QRRNQARFPGEAPTGYAHNLFAFPSECNFSGVRFSLDLVKIIKEDAERILTGPPFYKGCW 242
Query: 245 MVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGG 304
MVLIDAAKGC T+PPDLSKYP DFVV+SFYK+FGYPTGLGALI+R++AAKLLK TYFSGG
Sbjct: 243 MVLIDAAKGCATKPPDLSKYPADFVVISFYKLFGYPTGLGALIVRSEAAKLLKKTYFSGG 302
Query: 305 TVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMY 364
TVAASIADIDFVKRR +EELFEDGTASFLSIASIRHGF L+N++T+ AI RH + L Y
Sbjct: 303 TVAASIADIDFVKRRNDIEELFEDGTASFLSIASIRHGFKLLNTITISAISRHTSLLSTY 362
Query: 365 VRKVLLSLRHENGADVCTIYGTYTSEVSY--HDTGSMVSFNLKRPDGSWFGYREVEKLAS 422
VRK LL+LRH+NG+ VC +YG ++SEV + ++ G +V+FNLKRPDGSWFGYREVEKLAS
Sbjct: 363 VRKQLLALRHDNGSGVCMLYGGFSSEVCFLCNEMGPIVTFNLKRPDGSWFGYREVEKLAS 422
Query: 423 LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM 482
LS IQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGA+RVSFGYM
Sbjct: 423 LSRIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAVRVSFGYM 482
Query: 483 STFEDAK 489
STFEDAK
Sbjct: 483 STFEDAK 489
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255544672|ref|XP_002513397.1| molybdopterin cofactor sulfurase, putative [Ricinus communis] gi|223547305|gb|EEF48800.1| molybdopterin cofactor sulfurase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/490 (73%), Positives = 410/490 (83%), Gaps = 22/490 (4%)
Query: 1 MDYADKEEFLKEFGEDYGYPNAPKSIDQIRATEFKRL-ENGTVYLDHAGATLYSELQMEA 59
MD A KE+FL++FG DYGYP+ PKSID+IRA EFKRL +N TVYLDHAGATLYSELQMEA
Sbjct: 1 MD-AAKEQFLEKFGRDYGYPDGPKSIDEIRAAEFKRLSQNDTVYLDHAGATLYSELQMEA 59
Query: 60 IFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLV 119
IF D ++ AR+QVLDYFNAS KDYKCIFTSGATAALKL+
Sbjct: 60 IFNDLNSS--------------------GARQQVLDYFNASPKDYKCIFTSGATAALKLI 99
Query: 120 GEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKI 179
GEAFPW+ +SS+MYTMENHNSV+GIREYALS+G AAFA+D+E A + G+ +S S ++
Sbjct: 100 GEAFPWNCESSFMYTMENHNSVIGIREYALSKGGAAFAVDIESAASHAGVYKSDKISVEV 159
Query: 180 SLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPF 239
SL P+QRRK +R+ GDAYNLFAFPSECNFSG RF+LDL+N++K+NPERIL+ S F
Sbjct: 160 SLRPVQRRKEVELQKREAMGDAYNLFAFPSECNFSGFRFSLDLVNLIKQNPERILKGSQF 219
Query: 240 SKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNT 299
KG WMVLIDAAKGC TQPPDLSKYP DFVV+SFYK+FGYPTGLGALI++ND AK+LK T
Sbjct: 220 GKGSWMVLIDAAKGCATQPPDLSKYPADFVVLSFYKLFGYPTGLGALIVQNDTAKILKKT 279
Query: 300 YFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIA 359
YFSGGTVAASIAD+DFVKRR +EE+FEDGT SFLSIASIRHGF ++NSLT PAI RH A
Sbjct: 280 YFSGGTVAASIADVDFVKRRDNIEEIFEDGTISFLSIASIRHGFKILNSLTAPAIYRHTA 339
Query: 360 SLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEK 419
SL YV +LL LRHENGA+VCTIY S+V H++GS++SFNLKRPDGSWFGYREVEK
Sbjct: 340 SLTTYVENLLLDLRHENGANVCTIYKKQVSKVFCHESGSILSFNLKRPDGSWFGYREVEK 399
Query: 420 LASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSF 479
LASLSGIQLRTGCFCNPGACAKYLGLSH DLLSN+EAGHVCWDDNDI+HGKPTGA+RVSF
Sbjct: 400 LASLSGIQLRTGCFCNPGACAKYLGLSHLDLLSNLEAGHVCWDDNDILHGKPTGAVRVSF 459
Query: 480 GYMSTFEDAK 489
YMST+EDAK
Sbjct: 460 AYMSTYEDAK 469
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356531742|ref|XP_003534435.1| PREDICTED: molybdenum cofactor sulfurase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 747 bits (1929), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/488 (73%), Positives = 412/488 (84%), Gaps = 4/488 (0%)
Query: 4 ADKEEFLKEFGEDYGYPNAPKSIDQIRATEFKRLE-NGTVYLDHAGATLYSELQMEAIFR 62
A KEEFL++FGE YGYPN PKS+DQIRATEFKRL+ VYLDHAGATLYS+LQME++F
Sbjct: 3 AAKEEFLRDFGEHYGYPNGPKSVDQIRATEFKRLQLQDLVYLDHAGATLYSDLQMESVFN 62
Query: 63 DFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEA 122
D TTN+Y NPHSQSD S AT DIV+ AR+QVLDY NAS K+YKCIFTSGATAALKLVGEA
Sbjct: 63 DLTTNLYANPHSQSDSSSATLDIVKNARQQVLDYCNASPKEYKCIFTSGATAALKLVGEA 122
Query: 123 FPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLL 182
FPWS SS+MYTMENHNSVLGIREYAL QGAAA A+D+E + + E++ +TKIS
Sbjct: 123 FPWSCNSSFMYTMENHNSVLGIREYALGQGAAAIAVDIEGELHPEISGETI--TTKISPH 180
Query: 183 PIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK- 241
+QRRK A + +P GD YNLFAFPSECNFSG RF+LDL+ I+K++ +IL IS +
Sbjct: 181 QVQRRKVAGSLKEEPTGDVYNLFAFPSECNFSGLRFDLDLVKIIKEDSSKILGISSVCQS 240
Query: 242 GRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYF 301
G+WMVLIDAAKGC T PPDLSKYP DFV +SFYK+FGYPTGLGALI+RNDAAKLLK TYF
Sbjct: 241 GQWMVLIDAAKGCATMPPDLSKYPADFVAISFYKLFGYPTGLGALIVRNDAAKLLKKTYF 300
Query: 302 SGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASL 361
SGGTV+ASIADIDF+KRR+G+EELFEDGT SFLSI SIRHGF ++NSLTV AI RHIASL
Sbjct: 301 SGGTVSASIADIDFIKRREGIEELFEDGTVSFLSIVSIRHGFKILNSLTVSAISRHIASL 360
Query: 362 GMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLA 421
+Y RK+LL++RH NG+ VC +YG + S H+ G ++SFNLKRPDGSW+GYREVEKLA
Sbjct: 361 ALYTRKMLLAMRHGNGSSVCILYGHHNSMKLCHEMGPIISFNLKRPDGSWYGYREVEKLA 420
Query: 422 SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGY 481
SLSGIQLRTGCFCNPGACAKYLGLSH DL+SN EAGHVCWDD DII+GKP GA+R+SFGY
Sbjct: 421 SLSGIQLRTGCFCNPGACAKYLGLSHLDLISNTEAGHVCWDDLDIINGKPVGAVRISFGY 480
Query: 482 MSTFEDAK 489
MST+ED K
Sbjct: 481 MSTYEDVK 488
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464652|ref|XP_004150043.1| PREDICTED: molybdenum cofactor sulfurase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 738 bits (1904), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/489 (72%), Positives = 413/489 (84%), Gaps = 4/489 (0%)
Query: 1 MDYADKEEFLKEFGEDYGYPNAPKSIDQIRATEFKRLENGTVYLDHAGATLYSELQMEAI 60
MD A KEEFL+EFG DYGYP PK+ID+IRATEFKRL +G YLDHAGATLYSELQMEAI
Sbjct: 1 MDVA-KEEFLREFGRDYGYPGGPKTIDEIRATEFKRL-SGMAYLDHAGATLYSELQMEAI 58
Query: 61 FRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVG 120
F+D T NVYGNPHSQSD S AT +IVR+AR+QVLDY AS KDYKCIFTSGATAALKLVG
Sbjct: 59 FKDLTANVYGNPHSQSDSSFATSEIVRSARQQVLDYLKASPKDYKCIFTSGATAALKLVG 118
Query: 121 EAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKIS 180
EAFPWSHQSS++YTMENHNSVLGIREYAL QGA A+A+D+EEA ++D + + V S + +
Sbjct: 119 EAFPWSHQSSFVYTMENHNSVLGIREYALEQGAQAYAVDIEEA-EHDAFTGN-VASVQAT 176
Query: 181 LLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFS 240
I R A F ++D G AYNLFAFPSECNFSGS+F L+L+ I+K++ R + SP
Sbjct: 177 KHQILTRNEAKFLDKDHTGSAYNLFAFPSECNFSGSKFCLELVKIVKEDLIRYSDGSPSL 236
Query: 241 KGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTY 300
KGRW VLIDAAKGC T+PPDLSKYP DFVV+SFYK+FGYPTGLGALI+ DAAKLLK TY
Sbjct: 237 KGRWKVLIDAAKGCATEPPDLSKYPADFVVISFYKLFGYPTGLGALIVHTDAAKLLKRTY 296
Query: 301 FSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIAS 360
FSGGTVAASIADI++VKRR+G+EELFEDGT FLSIAS+ HGF ++NSLT+PAI RH +S
Sbjct: 297 FSGGTVAASIADINYVKRREGIEELFEDGTIPFLSIASLCHGFKVLNSLTIPAISRHTSS 356
Query: 361 LGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKL 420
L Y+R +L++LRH NG +CTIYG+ +S+ ++ G +VSFNLK+PDGSW G+REVEKL
Sbjct: 357 LATYLRNILVALRHPNGTSICTIYGSRSSKTLCNEMGPVVSFNLKQPDGSWVGHREVEKL 416
Query: 421 ASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFG 480
ASLSGIQLRTGCFCNPGACAKYLGL+HSDL +NIEAGHVCWDD DII+GKPTGA+RVS G
Sbjct: 417 ASLSGIQLRTGCFCNPGACAKYLGLTHSDLATNIEAGHVCWDDCDIINGKPTGAVRVSLG 476
Query: 481 YMSTFEDAK 489
YMST+ED K
Sbjct: 477 YMSTYEDIK 485
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449502500|ref|XP_004161658.1| PREDICTED: molybdenum cofactor sulfurase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/489 (72%), Positives = 413/489 (84%), Gaps = 4/489 (0%)
Query: 1 MDYADKEEFLKEFGEDYGYPNAPKSIDQIRATEFKRLENGTVYLDHAGATLYSELQMEAI 60
MD A KEEFL+EFG DYGYP PK+ID+IRATEFKRL +G YLDHAGATLYSELQMEAI
Sbjct: 1 MDVA-KEEFLREFGRDYGYPGGPKTIDEIRATEFKRL-SGMAYLDHAGATLYSELQMEAI 58
Query: 61 FRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVG 120
F+D T NVYGNPHSQSD S AT +IVR+AR+QVLDY AS KDYKCIFTSGATAALKLVG
Sbjct: 59 FKDLTANVYGNPHSQSDSSFATSEIVRSARQQVLDYLKASPKDYKCIFTSGATAALKLVG 118
Query: 121 EAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKIS 180
EAFPWSHQSS++YTMENHNSVLGIREYAL QGA A+A+D+EEA ++D + + V S + +
Sbjct: 119 EAFPWSHQSSFVYTMENHNSVLGIREYALEQGAQAYAVDIEEA-EHDAFTGN-VASVQAT 176
Query: 181 LLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFS 240
I R A F ++D G AYNLFAFPSECNFSGS+F L+L+ I+K++ R + SP
Sbjct: 177 KHQILTRNEAKFLDKDHTGSAYNLFAFPSECNFSGSKFCLELVKIVKEDLIRYSDDSPSL 236
Query: 241 KGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTY 300
KGRW VLIDAAKGC T+PPDLSKYP DFVV+SFYK+FGYPTGLGALI+ DAAKLLK TY
Sbjct: 237 KGRWKVLIDAAKGCATEPPDLSKYPADFVVISFYKLFGYPTGLGALIVHTDAAKLLKRTY 296
Query: 301 FSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIAS 360
FSGGTVAASIADI++VKRR+G+EELFEDGT FLSIAS+ HGF ++NSLT+PAI RH +S
Sbjct: 297 FSGGTVAASIADINYVKRREGIEELFEDGTIPFLSIASLCHGFKVLNSLTIPAISRHTSS 356
Query: 361 LGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKL 420
L Y+R +L++LRH NG +CTIYG+ +S+ ++ G +VSFNL++PDGSW G+REVEKL
Sbjct: 357 LATYLRNILVALRHPNGTSICTIYGSRSSKTLCNEMGPVVSFNLRQPDGSWVGHREVEKL 416
Query: 421 ASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFG 480
ASLSGIQLRTGCFCNPGACAKYLGL+HSDL +NIEAGHVCWDD DII+GKPTGA+RVS G
Sbjct: 417 ASLSGIQLRTGCFCNPGACAKYLGLTHSDLATNIEAGHVCWDDCDIINGKPTGAVRVSLG 476
Query: 481 YMSTFEDAK 489
YMST+ED K
Sbjct: 477 YMSTYEDIK 485
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18394375|ref|NP_564001.1| Molybdenum cofactor sulfurase [Arabidopsis thaliana] gi|75169006|sp|Q9C5X8.1|MOCOS_ARATH RecName: Full=Molybdenum cofactor sulfurase; Short=MOS; Short=MoCo sulfurase; AltName: Full=Abscisic acid protein 3; AltName: Full=Low expression of osmotically expressive genes protein 5; AltName: Full=Molybdenum cofactor sulfurtransferase gi|13123673|gb|AAK12939.1|AF325457_1 molybdenum cofactor sulfurase [Arabidopsis thaliana] gi|15407262|gb|AAK58888.1| molybdenum cofactor sulfurase [Arabidopsis thaliana] gi|332191346|gb|AEE29467.1| Molybdenum cofactor sulfurase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/484 (71%), Positives = 405/484 (83%), Gaps = 1/484 (0%)
Query: 7 EEFLKEFGEDYGYPNAPKSIDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTT 66
E FLKEFG+ YGYP+ PK+I +IR TEFKRL+ G VYLDHAG+TLYSELQME IF+DFT+
Sbjct: 2 EAFLKEFGDYYGYPDGPKNIQEIRDTEFKRLDKGVVYLDHAGSTLYSELQMEYIFKDFTS 61
Query: 67 NVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWS 126
NV+GNPHSQSDIS AT D++ AR QVL+YFNAS +DY C+FTSGATAALKLVGE FPW+
Sbjct: 62 NVFGNPHSQSDISSATSDLIADARHQVLEYFNASPEDYSCLFTSGATAALKLVGETFPWT 121
Query: 127 HQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQR 186
S+++YTMENHNSVLGIREYAL+QGA+A A+D+EEA + G + S K+ +Q
Sbjct: 122 QDSNFLYTMENHNSVLGIREYALAQGASACAVDIEEAANQPGQLTNSGPSIKVKHRAVQM 181
Query: 187 RKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG-RWM 245
R + + + G+AYNLFAFPSECNFSG RFNLDL+ +MK+N E +L+ SPFSK RWM
Sbjct: 182 RNTSKLQKEESRGNAYNLFAFPSECNFSGLRFNLDLVKLMKENTETVLQGSPFSKSKRWM 241
Query: 246 VLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGT 305
VLIDAAKGC T PPDLS+YP DFVV+SFYK+FGYPTGLGAL++RNDAAKLLK TYFSGGT
Sbjct: 242 VLIDAAKGCATLPPDLSEYPADFVVLSFYKLFGYPTGLGALLVRNDAAKLLKKTYFSGGT 301
Query: 306 VAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYV 365
VAASIADIDFVKRR+ VEE FEDG+ASFLSIA+IRHGF L+ SLT AI H SL +YV
Sbjct: 302 VAASIADIDFVKRRERVEEFFEDGSASFLSIAAIRHGFKLLKSLTPSAIWMHTTSLSIYV 361
Query: 366 RKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSG 425
+K L +LRH NGA VC +YG+ E+S H +G V+FNLKRPDGSWFGY EVEKLASLSG
Sbjct: 362 KKKLQALRHGNGAAVCVLYGSENLELSSHKSGPTVTFNLKRPDGSWFGYLEVEKLASLSG 421
Query: 426 IQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTF 485
IQLRTGCFCNPGACAKYL LSHS+L SN+EAGH+CWDDND+I+GKPTGA+RVSFGYMSTF
Sbjct: 422 IQLRTGCFCNPGACAKYLELSHSELRSNVEAGHICWDDNDVINGKPTGAVRVSFGYMSTF 481
Query: 486 EDAK 489
EDAK
Sbjct: 482 EDAK 485
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297844580|ref|XP_002890171.1| ABA3/ATABA3/LOS5/SIR3 [Arabidopsis lyrata subsp. lyrata] gi|297336013|gb|EFH66430.1| ABA3/ATABA3/LOS5/SIR3 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/484 (70%), Positives = 403/484 (83%), Gaps = 1/484 (0%)
Query: 7 EEFLKEFGEDYGYPNAPKSIDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTT 66
E FLKEFG+ YGYP+ K+I +IR TEFKRL+ G VYLDHAG+TLYSELQME IF+DFT+
Sbjct: 2 EAFLKEFGDYYGYPDGSKNIKEIRDTEFKRLDKGVVYLDHAGSTLYSELQMENIFKDFTS 61
Query: 67 NVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWS 126
NV+GNPHSQSDIS AT D++ AR QVL+YFNAS +DY CIFTSGATAALKLVGE FPW+
Sbjct: 62 NVFGNPHSQSDISSATSDLIADARHQVLEYFNASPEDYSCIFTSGATAALKLVGETFPWT 121
Query: 127 HQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQR 186
S+++YTMENHNSVLGIREYAL+QGA+A A+D+EE + G + S K+ +Q
Sbjct: 122 QDSNFLYTMENHNSVLGIREYALAQGASACAVDIEEVANQPGQLTNSGPSIKVKHRAVQM 181
Query: 187 RKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG-RWM 245
R + + + G+AYNLFAFPSECNFSG RFNLDL+ ++K+NPE +L+ SPFSK RWM
Sbjct: 182 RNTSKIQKEESRGNAYNLFAFPSECNFSGLRFNLDLVKLIKENPEIMLQGSPFSKSKRWM 241
Query: 246 VLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGT 305
VLIDAAKGC T PPDL +YP DFVV+SFYK+FGYPTGLGAL++RNDAAKLLK TYFSGGT
Sbjct: 242 VLIDAAKGCATLPPDLLEYPADFVVVSFYKLFGYPTGLGALLVRNDAAKLLKKTYFSGGT 301
Query: 306 VAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYV 365
VAASIADIDFVKRR+ VEE FEDG+ASFLSIA+IRHGF L+ SLT AI H SL +YV
Sbjct: 302 VAASIADIDFVKRRERVEEFFEDGSASFLSIAAIRHGFKLLKSLTPSAIWMHTTSLSIYV 361
Query: 366 RKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSG 425
+K L +L+H NGA VC +YG+ ++S H +G V+FNLKRPDGSWFGY EVEKLASLSG
Sbjct: 362 KKKLQALQHGNGAGVCVLYGSENLKLSSHRSGPTVTFNLKRPDGSWFGYLEVEKLASLSG 421
Query: 426 IQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTF 485
IQLRTGCFCNPGACAKYL LSHSDL SN+EAGH+CWDDND+I+GKPTGA+RVSFGYMSTF
Sbjct: 422 IQLRTGCFCNPGACAKYLDLSHSDLFSNVEAGHICWDDNDVINGKPTGAVRVSFGYMSTF 481
Query: 486 EDAK 489
E+A+
Sbjct: 482 EEAQ 485
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357470231|ref|XP_003605400.1| Molybdenum cofactor sulfurase [Medicago truncatula] gi|355506455|gb|AES87597.1| Molybdenum cofactor sulfurase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/539 (66%), Positives = 402/539 (74%), Gaps = 59/539 (10%)
Query: 6 KEEFLKEFGEDYGYPNAPKSIDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFT 65
K+ FLKEFGE YGYPNA ++IDQIRATEF RL++ VYLDHAGATLYSELQME++F+D T
Sbjct: 81 KKNFLKEFGEHYGYPNAARTIDQIRATEFNRLQD-LVYLDHAGATLYSELQMESVFKDLT 139
Query: 66 TNVYGNP----------HSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAA 115
TNVYGNP +SQSD S AT DIVR AR+QVLDY NAS +DYKCIFTSGATAA
Sbjct: 140 TNVYGNPRILPFFLIFINSQSDSSAATHDIVRDARQQVLDYCNASPEDYKCIFTSGATAA 199
Query: 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREY---------------------------- 147
LKLVGEAFPWS S++MYTMENHNSVLGIREY
Sbjct: 200 LKLVGEAFPWSCNSNFMYTMENHNSVLGIREYPSQEMIYHTSFVKYITISSNKLFKMPVH 259
Query: 148 ------------ALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPER 195
AL QGAAA A+D+E D E TKISL QRRK E
Sbjct: 260 SSLCTSITSIRYALGQGAAAIAVDIE---DVHPRIEGEKFPTKISLHQEQRRKVTGLQEE 316
Query: 196 DPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCV 255
+P GD YNLFAFPSECNFSG RF+LDL I+K++ +IL S KGRW+VLIDAAKG
Sbjct: 317 EPMGDVYNLFAFPSECNFSGLRFDLDLAKIIKEDSSKILGASVCKKGRWLVLIDAAKGSA 376
Query: 256 TQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRND-----AAKLLKNTYFSGGTVAASI 310
T PPDLSKYPVDFV +SFYK+FGYPTGLGAL++RN AAKLLK +YFSGGTVAASI
Sbjct: 377 TMPPDLSKYPVDFVALSFYKLFGYPTGLGALVVRNGKIPGYAAKLLKKSYFSGGTVAASI 436
Query: 311 ADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLL 370
ADIDF+KRR+G+EELFEDGT SFLSIASIRHGF ++NSLTV AI RH SL +Y RK LL
Sbjct: 437 ADIDFIKRREGIEELFEDGTVSFLSIASIRHGFKILNSLTVSAISRHTTSLALYTRKTLL 496
Query: 371 SLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRT 430
+LRH NG+ VC +YG + H+ GS+VSFNLKRPDGSW+GYREVEKLASLSGIQLRT
Sbjct: 497 ALRHGNGSSVCILYGRHDLMEMCHEMGSIVSFNLKRPDGSWYGYREVEKLASLSGIQLRT 556
Query: 431 GCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAK 489
GCFCNPGACAKYLGLSH DL+SN EAGHVCWDD DII GKP GA+RVSFGYMSTFEDAK
Sbjct: 557 GCFCNPGACAKYLGLSHMDLISNTEAGHVCWDDQDIISGKPIGAVRVSFGYMSTFEDAK 615
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 508 | ||||||
| TAIR|locus:2017943 | 819 | ABA3 "ABA DEFICIENT 3" [Arabid | 0.950 | 0.589 | 0.716 | 1.2e-191 | |
| UNIPROTKB|G3N1I0 | 882 | MOCOS "Molybdenum cofactor sul | 0.564 | 0.325 | 0.483 | 1.4e-103 | |
| UNIPROTKB|Q9N0E7 | 882 | MOCOS "Molybdenum cofactor sul | 0.564 | 0.325 | 0.483 | 1.4e-103 | |
| UNIPROTKB|F1SAI5 | 889 | LOC100621611 "Uncharacterized | 0.566 | 0.323 | 0.481 | 2.8e-101 | |
| UNIPROTKB|F1N3A9 | 849 | MOCOS "Molybdenum cofactor sul | 0.564 | 0.338 | 0.483 | 1.6e-100 | |
| UNIPROTKB|F1PDQ7 | 879 | MOCOS "Uncharacterized protein | 0.582 | 0.336 | 0.457 | 2.3e-99 | |
| UNIPROTKB|Q96EN8 | 888 | MOCOS "Molybdenum cofactor sul | 0.553 | 0.316 | 0.468 | 2.9e-99 | |
| ZFIN|ZDB-GENE-050327-94 | 831 | zgc:110784 "zgc:110784" [Danio | 0.553 | 0.338 | 0.439 | 2.6e-94 | |
| DICTYBASE|DDB_G0272935 | 1007 | mocos "molybdenum cofactor sul | 0.874 | 0.440 | 0.423 | 1.6e-93 | |
| UNIPROTKB|B0WSX1 | 760 | mal2 "Molybdenum cofactor sulf | 0.625 | 0.418 | 0.401 | 5.1e-81 |
| TAIR|locus:2017943 ABA3 "ABA DEFICIENT 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1857 (658.8 bits), Expect = 1.2e-191, P = 1.2e-191
Identities = 347/484 (71%), Positives = 405/484 (83%)
Query: 7 EEFLKEFGEDYGYPNAPKSIDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTT 66
E FLKEFG+ YGYP+ PK+I +IR TEFKRL+ G VYLDHAG+TLYSELQME IF+DFT+
Sbjct: 2 EAFLKEFGDYYGYPDGPKNIQEIRDTEFKRLDKGVVYLDHAGSTLYSELQMEYIFKDFTS 61
Query: 67 NVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWS 126
NV+GNPHSQSDIS AT D++ AR QVL+YFNAS +DY C+FTSGATAALKLVGE FPW+
Sbjct: 62 NVFGNPHSQSDISSATSDLIADARHQVLEYFNASPEDYSCLFTSGATAALKLVGETFPWT 121
Query: 127 HQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQR 186
S+++YTMENHNSVLGIREYAL+QGA+A A+D+EEA + G + S K+ +Q
Sbjct: 122 QDSNFLYTMENHNSVLGIREYALAQGASACAVDIEEAANQPGQLTNSGPSIKVKHRAVQM 181
Query: 187 RKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG-RWM 245
R + + + G+AYNLFAFPSECNFSG RFNLDL+ +MK+N E +L+ SPFSK RWM
Sbjct: 182 RNTSKLQKEESRGNAYNLFAFPSECNFSGLRFNLDLVKLMKENTETVLQGSPFSKSKRWM 241
Query: 246 VLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGT 305
VLIDAAKGC T PPDLS+YP DFVV+SFYK+FGYPTGLGAL++RNDAAKLLK TYFSGGT
Sbjct: 242 VLIDAAKGCATLPPDLSEYPADFVVLSFYKLFGYPTGLGALLVRNDAAKLLKKTYFSGGT 301
Query: 306 VAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYV 365
VAASIADIDFVKRR+ VEE FEDG+ASFLSIA+IRHGF L+ SLT AI H SL +YV
Sbjct: 302 VAASIADIDFVKRRERVEEFFEDGSASFLSIAAIRHGFKLLKSLTPSAIWMHTTSLSIYV 361
Query: 366 RKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSG 425
+K L +LRH NGA VC +YG+ E+S H +G V+FNLKRPDGSWFGY EVEKLASLSG
Sbjct: 362 KKKLQALRHGNGAAVCVLYGSENLELSSHKSGPTVTFNLKRPDGSWFGYLEVEKLASLSG 421
Query: 426 IQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTF 485
IQLRTGCFCNPGACAKYL LSHS+L SN+EAGH+CWDDND+I+GKPTGA+RVSFGYMSTF
Sbjct: 422 IQLRTGCFCNPGACAKYLELSHSELRSNVEAGHICWDDNDVINGKPTGAVRVSFGYMSTF 481
Query: 486 EDAK 489
EDAK
Sbjct: 482 EDAK 485
|
|
| UNIPROTKB|G3N1I0 MOCOS "Molybdenum cofactor sulfurase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 701 (251.8 bits), Expect = 1.4e-103, Sum P(2) = 1.4e-103
Identities = 144/298 (48%), Positives = 196/298 (65%)
Query: 196 DPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK-GRWMVLIDAAKGC 254
DPAG +LF +P++ NFSG+R+ L I +K R P S+ G+W VL+DAA
Sbjct: 190 DPAGQPPHLFCYPAQSNFSGTRYPLSWIGEVKSGRRR-----PASRPGKWFVLLDAAAFV 244
Query: 255 VTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADID 314
T P DLS + DFV +SFYKIFG+PTGLGAL++ N A LL+ TYF GGT AA +A D
Sbjct: 245 GTSPLDLSVHQADFVPISFYKIFGFPTGLGALLVNNRLAALLRKTYFGGGTAAAYLAGDD 304
Query: 315 FVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLT--VPAICRHIASLGMYVRKVLLSL 372
F R+ V E FEDGT SFL + +++HGF+ + LT + +I +H +L Y L SL
Sbjct: 305 FYVPRESVAERFEDGTISFLDVIALKHGFDALERLTGGMESIRQHTFTLAQYTYTALSSL 364
Query: 373 RHENGADVCTIYGTYTSEVSYHDT-GSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTG 431
R+ NGA V IY S+ S + G ++SFN+ G+ GY +V+K+ASL I +RTG
Sbjct: 365 RYPNGAPVVQIYSD--SDFSSPEVQGPVISFNVLDDHGNVVGYSQVDKMASLHNIHVRTG 422
Query: 432 CFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAK 489
CFCN GAC ++LG+S + +++AGHVC DD D+I G+PTG++R+SFGYMST EDA+
Sbjct: 423 CFCNTGACQRHLGISDEMVKKHLQAGHVCGDDVDLIDGQPTGSVRISFGYMSTLEDAQ 480
|
|
| UNIPROTKB|Q9N0E7 MOCOS "Molybdenum cofactor sulfurase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 701 (251.8 bits), Expect = 1.4e-103, Sum P(2) = 1.4e-103
Identities = 144/298 (48%), Positives = 196/298 (65%)
Query: 196 DPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK-GRWMVLIDAAKGC 254
DPAG +LF +P++ NFSG+R+ L I +K R P S+ G+W VL+DAA
Sbjct: 190 DPAGQPPHLFCYPAQSNFSGTRYPLSWIGEVKSGRRR-----PASRPGKWFVLLDAAAFV 244
Query: 255 VTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADID 314
T P DLS + DFV +SFYKIFG+PTGLGAL++ N A LL+ TYF GGT AA +A D
Sbjct: 245 GTSPLDLSVHQADFVPISFYKIFGFPTGLGALLVNNRLAALLRKTYFGGGTAAAYLAGDD 304
Query: 315 FVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLT--VPAICRHIASLGMYVRKVLLSL 372
F R+ V E FEDGT SFL + +++HGF+ + LT + +I +H +L Y L SL
Sbjct: 305 FYVPRESVAERFEDGTISFLDVIALKHGFDALERLTGGMESIRQHTFTLAQYTYTALSSL 364
Query: 373 RHENGADVCTIYGTYTSEVSYHDT-GSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTG 431
R+ NGA V IY S+ S + G ++SFN+ G+ GY +V+K+ASL I +RTG
Sbjct: 365 RYPNGAPVVQIYSD--SDFSSPEVQGPVISFNVLDDHGNVVGYSQVDKMASLHNIHVRTG 422
Query: 432 CFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAK 489
CFCN GAC ++LG+S + +++AGHVC DD D+I G+PTG++R+SFGYMST EDA+
Sbjct: 423 CFCNTGACQRHLGISDEMVKKHLQAGHVCGDDVDLIDGQPTGSVRISFGYMSTLEDAQ 480
|
|
| UNIPROTKB|F1SAI5 LOC100621611 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 695 (249.7 bits), Expect = 2.8e-101, Sum P(2) = 2.8e-101
Identities = 143/297 (48%), Positives = 195/297 (65%)
Query: 196 DPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCV 255
DP +LF +P++ NFSGSR+ L I +K R + +P G+W VL+DAA
Sbjct: 190 DPDHQPPHLFCYPAQSNFSGSRYPLSWIGEVKSGQMRPVS-AP---GKWYVLLDAAAYVG 245
Query: 256 TQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDF 315
T P DLS + DFV +SFYKIFG+PTGLGAL++ N A LL+ TYF GGT AA +A DF
Sbjct: 246 TSPLDLSVHQADFVPISFYKIFGFPTGLGALLVNNRTAPLLRKTYFGGGTAAAYLAGEDF 305
Query: 316 VKRRQGVEELFEDGTASFLSIASIRHGFNLINSLT--VPAICRHIASLGMYVRKVLLSLR 373
R+ V E FEDGT SFL + +++HGF+ + +LT + I +H +L Y L +LR
Sbjct: 306 YIPRESVAERFEDGTISFLDVIALKHGFDALENLTGGMECIRQHTFTLARYTYASLTALR 365
Query: 374 HENGADVCTIYGTYTSEVSYHDT-GSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGC 432
+ NGA V IY SE S + G ++SFN+ DG+ GY +V+K+ASL I +RTGC
Sbjct: 366 YPNGAPVVRIYSD--SEFSSPEVQGPVISFNVLDDDGNIIGYSQVDKMASLHNIHVRTGC 423
Query: 433 FCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAK 489
FCN GAC ++LG+S + +++AGHVC DD D+I G+PTG++R+SFGYMST EDA+
Sbjct: 424 FCNTGACQRHLGISDEMVKKHLQAGHVCGDDMDLIDGQPTGSVRISFGYMSTLEDAQ 480
|
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| UNIPROTKB|F1N3A9 MOCOS "Molybdenum cofactor sulfurase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 701 (251.8 bits), Expect = 1.6e-100, Sum P(2) = 1.6e-100
Identities = 144/298 (48%), Positives = 196/298 (65%)
Query: 196 DPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK-GRWMVLIDAAKGC 254
DPAG +LF +P++ NFSG+R+ L I +K R P S+ G+W VL+DAA
Sbjct: 157 DPAGQPPHLFCYPAQSNFSGTRYPLSWIGEVKSGRRR-----PASRPGKWFVLLDAAAFV 211
Query: 255 VTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADID 314
T P DLS + DFV +SFYKIFG+PTGLGAL++ N A LL+ TYF GGT AA +A D
Sbjct: 212 GTSPLDLSVHQADFVPISFYKIFGFPTGLGALLVNNRLAALLRKTYFGGGTAAAYLAGDD 271
Query: 315 FVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLT--VPAICRHIASLGMYVRKVLLSL 372
F R+ V E FEDGT SFL + +++HGF+ + LT + +I +H +L Y L SL
Sbjct: 272 FYVPRESVAERFEDGTISFLDVIALKHGFDALERLTGGMESIRQHTFTLAQYTYTALSSL 331
Query: 373 RHENGADVCTIYGTYTSEVSYHDT-GSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTG 431
R+ NGA V IY S+ S + G ++SFN+ G+ GY +V+K+ASL I +RTG
Sbjct: 332 RYPNGAPVVQIYSD--SDFSSPEVQGPVISFNVLDDHGNVVGYSQVDKMASLHNIHVRTG 389
Query: 432 CFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAK 489
CFCN GAC ++LG+S + +++AGHVC DD D+I G+PTG++R+SFGYMST EDA+
Sbjct: 390 CFCNTGACQRHLGISDEMVKKHLQAGHVCGDDVDLIDGQPTGSVRISFGYMSTLEDAQ 447
|
|
| UNIPROTKB|F1PDQ7 MOCOS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 673 (242.0 bits), Expect = 2.3e-99, Sum P(2) = 2.3e-99
Identities = 141/308 (45%), Positives = 197/308 (63%)
Query: 185 QRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRW 244
+RR A+ DP +LF +P++ NFSG+R+ L I +K R+ +S G+W
Sbjct: 181 ERRAAAA---SDPDCQLPHLFCYPAQSNFSGTRYPLSWIGEVKAG--RMCPVSV--PGKW 233
Query: 245 MVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGG 304
VL+DAA T P DLS + DFV +SFYK+FG+PTGLGAL++ N A LL+ TYF GG
Sbjct: 234 FVLLDAASYVSTSPLDLSVHQADFVPLSFYKLFGFPTGLGALLVNNRVAPLLRKTYFGGG 293
Query: 305 TVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLT--VPAICRHIASLG 362
T AA +A DF R V E FEDGT SFL + +++HGF+ + LT + I +H +L
Sbjct: 294 TAAAYLAGEDFYIPRSSVAERFEDGTISFLDVIALKHGFDALERLTGGMENIKQHTFTLA 353
Query: 363 MYVRKVLLSLRHENGADVCTIYGTYTSEVSY-HDTGSMVSFNLKRPDGSWFGYREVEKLA 421
Y L +LR+ +GA V IY SE S + G +++FN+ G+ GY +V+K+A
Sbjct: 354 QYTYTALSALRYPDGAPVVRIYSD--SEFSSPEEQGPIINFNVLDHSGNIIGYSQVDKMA 411
Query: 422 SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGY 481
SL I +RTGCFCN GAC ++LG+S + +++AGHVC DD D+I G+PTG++R+SFGY
Sbjct: 412 SLYNIHVRTGCFCNTGACQRHLGISDEMVKKHLQAGHVCGDDVDLIDGQPTGSVRISFGY 471
Query: 482 MSTFEDAK 489
MST EDA+
Sbjct: 472 MSTVEDAQ 479
|
|
| UNIPROTKB|Q96EN8 MOCOS "Molybdenum cofactor sulfurase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 667 (239.9 bits), Expect = 2.9e-99, Sum P(2) = 2.9e-99
Identities = 136/290 (46%), Positives = 191/290 (65%)
Query: 203 NLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLS 262
+LF +P++ NFSG R+ L I +K R+ +S + G+W VL+DAA T P DLS
Sbjct: 196 HLFCYPAQSNFSGVRYPLSWIEEVKSG--RLHPVS--TPGKWFVLLDAASYVSTSPLDLS 251
Query: 263 KYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGV 322
+ DFV +SFYKIFG+PTGLGAL++ N AA LL+ TYF GGT +A +A DF RQ V
Sbjct: 252 AHQADFVPISFYKIFGFPTGLGALLVHNRAAPLLRKTYFGGGTASAYLAGEDFYIPRQSV 311
Query: 323 EELFEDGTASFLSIASIRHGFNLINSLT--VPAICRHIASLGMYVRKVLLSLRHENGADV 380
+ FEDGT SFL + +++HGF+ + LT + I +H +L Y L SL++ NGA V
Sbjct: 312 AQRFEDGTISFLDVIALKHGFDTLERLTGGMENIKQHTFTLAQYTYVALSSLQYPNGAPV 371
Query: 381 CTIYGTYTSEVSYHDT-GSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGAC 439
IY SE S + G +++FN+ G+ GY +V+K+ASL I LRTGCFCN GAC
Sbjct: 372 VRIYSD--SEFSSPEVQGPIINFNVLDDKGNIIGYSQVDKMASLYNIHLRTGCFCNTGAC 429
Query: 440 AKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAK 489
++LG+S+ + + +AGHVC D+ D+I G+PTG++R+SFGYMST +D +
Sbjct: 430 QRHLGISNEMVRKHFQAGHVCGDNMDLIDGQPTGSVRISFGYMSTLDDVQ 479
|
|
| ZFIN|ZDB-GENE-050327-94 zgc:110784 "zgc:110784" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 643 (231.4 bits), Expect = 2.6e-94, Sum P(2) = 2.6e-94
Identities = 128/291 (43%), Positives = 187/291 (64%)
Query: 203 NLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK--GRWMVLIDAAKGCVTQPPD 260
+LF +P++ NFSG +++L + ++ ++ P + G+W VL+DAA P D
Sbjct: 193 HLFCYPAQSNFSGRKYSLSYVKGIQSQ-----QLYPACEHHGQWFVLLDAACFVSCSPLD 247
Query: 261 LSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQ 320
LS+YP DFV +SFYK+FG+PTGLGAL++RN+AA++L+ TYF GGT AA + + ++ +
Sbjct: 248 LSQYPADFVPISFYKMFGFPTGLGALLVRNEAAEVLRKTYFGGGTAAAYLVEENYFIPKP 307
Query: 321 GVEELFEDGTASFLSIASIRHGFNLINSLT--VPAICRHIASLGMYVRKVLLSLRHENGA 378
+ FEDGT SFL I S+ HGF + LT + I H L Y VL L H NG
Sbjct: 308 NLASRFEDGTISFLDIISLHHGFETLQKLTGSMTNIQLHTFGLARYTYTVLSCLCHSNGK 367
Query: 379 DVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGA 438
V IY + S + G++++F+L G GY +V+K+ASL I +RTGCFCN GA
Sbjct: 368 HVAQIYCDNDFQ-SIAEQGAIINFSLLDCHGRTVGYSQVDKMASLFNIHIRTGCFCNTGA 426
Query: 439 CAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAK 489
C YL +S+ ++ SN+ AGH+C D+ D++ G+PTG++RVSFGYMS+FED +
Sbjct: 427 CQHYLAISNQNVKSNLHAGHICGDNIDLVDGRPTGSLRVSFGYMSSFEDCQ 477
|
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| DICTYBASE|DDB_G0272935 mocos "molybdenum cofactor sulfurase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 931 (332.8 bits), Expect = 1.6e-93, P = 1.6e-93
Identities = 205/484 (42%), Positives = 292/484 (60%)
Query: 33 EFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQ 92
+F +L++ VYLDHA +TL S Q+E I ++ +++ NPHS + I L T + V + RE
Sbjct: 138 QFPKLKD-IVYLDHAASTLASMNQIEEISKELKNSMFCNPHSVNPIGLKTKEEVDSIREN 196
Query: 93 VLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQG 152
+L+YFNA + Y IFTSG T +LK VGE F W+ S + Y++E+HNS+LGIREYA
Sbjct: 197 ILNYFNAPYRQYSVIFTSGCTDSLKKVGEYFAWTKNSKFYYSLESHNSLLGIREYACESI 256
Query: 153 AAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECN 212
+ + L + +L I D ++Y+LF +P +CN
Sbjct: 257 GGSSTTSFQPI---PSLYFKCNNNQFNDILEIIGNND------DNNNESYSLFGYPGQCN 307
Query: 213 FSGSRFNLDLIN-IMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVM 271
+SG+++ L+LIN I KK P + VL+DAA T DL+KYPVDF+ +
Sbjct: 308 YSGTKYPLELINRIQKKYP------------KCKVLLDAASLVSTSSFDLTKYPVDFMTI 355
Query: 272 SFYKIFGYPTGLGALIMRNDAAK--LLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDG 329
SFYK+FGYPTG+GALI++ND+ + L+ YFSGGTV S+A F R + E EDG
Sbjct: 356 SFYKMFGYPTGIGALIVKNDSGEKCLINKKYFSGGTVNVSMAQERFHVDRPSLSERLEDG 415
Query: 330 TASFLSIASIRHGFNLINSLT--VPAICRHIASLGMYVRKVLLSLRHENGA---DVCTIY 384
T +F++I S++HGFN+IN+ + + H SL Y ++ +L L H + + +C IY
Sbjct: 416 TINFMNIISLKHGFNIINNQLGGIDNVKLHTFSLTQYCKEEMLKLYHSDNSKQQQLCIIY 475
Query: 385 GTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLG 444
+ S GS+++FN+ R +G FGY +VEKLASLS I LRTGCFCNPGAC YL
Sbjct: 476 SDNHFKDSSKQ-GSIINFNIFRSNGELFGYNQVEKLASLSSIYLRTGCFCNPGACHGYLN 534
Query: 445 LSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF--S 502
LS D+ +++ GHVCWD DI++GKPTG++R+SFGYM+ F D + F+NF S
Sbjct: 535 LSKKDIEQHLKDGHVCWDSKDILNGKPTGSVRISFGYMNNFNDV-------YKFINFLKS 587
Query: 503 QFLN 506
F+N
Sbjct: 588 NFIN 591
|
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| UNIPROTKB|B0WSX1 mal2 "Molybdenum cofactor sulfurase 2" [Culex quinquefasciatus (taxid:7176)] | Back alignment and assigned GO terms |
|---|
Score = 597 (215.2 bits), Expect = 5.1e-81, Sum P(2) = 5.1e-81
Identities = 141/351 (40%), Positives = 197/351 (56%)
Query: 151 QGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRR--KGASFPERDPAGDAYNLFAFP 208
+GA + D +V L V T+ ++PI R +G R G +L FP
Sbjct: 111 EGAFVYTRDNHTSV----LGMRAVVGTE-RIVPIGREDLRGG----RSTGGGKSSLVVFP 161
Query: 209 SECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDF 268
++CNF+G ++ L L+ +++N + F R+ V +DAA T DL+K+ F
Sbjct: 162 AQCNFNGFKYPLGLVEDIQRNG-----LVGFDGDRFHVCLDAASFVSTNALDLAKHQPSF 216
Query: 269 VVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFED 328
V +SFYKIFG+PTGLGAL++ A LLK Y+ GGTV ++A +F +R + + FED
Sbjct: 217 VCLSFYKIFGFPTGLGALLVHRSAQNLLKKRYYGGGTVKIAMAGRNFHVKRDSLADQFED 276
Query: 329 GTASFLSIASIRHGFNLINSLTVPA---------ICRHIASLGMYVRKVLLSLRHENGAD 379
GT F SI S+ GF + L VPA + RH +LG Y + L LRH N
Sbjct: 277 GTVPFTSIISLLQGFETLERL-VPASGELSSIDRVSRHTFALGRYCFQRLRGLRHANSNS 335
Query: 380 VCTIYGTYTSEVSYHDTGS---MVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNP 436
V +Y + + D GS +V+FN+ DGS+ G+ EV +AS+ + LRTGCFCNP
Sbjct: 336 VVKLY----HDTEFEDRGSQGGIVNFNVLHEDGSFVGFAEVAYMASVHNVVLRTGCFCNP 391
Query: 437 GACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFED 487
GAC + L L+ D+L AGHVC D ND+I G+PTG++RVSFGYMS ED
Sbjct: 392 GACQRLLELTDEDVLKQFNAGHVCGDANDLIGGQPTGSVRVSFGYMSRRED 442
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|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9C5X8 | MOCOS_ARATH | 2, ., 8, ., 1, ., 9 | 0.7169 | 0.9507 | 0.5897 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| ABA3 | ABA3 (ABA DEFICIENT 3); Mo-molybdopterin cofactor sulfurase/ selenocysteine lyase; Encodes molybdenum cofactor sulfurase. Involved in Moco biosynthesis. Involved in the conversion of ABA-aldehyde to ABA, the last step of abscisic acid (ABA) biosynthesis. sir loss-of-function mutants are resistant to sirtinol, a modulator of auxin signaling.N terminal domain is similar to bacterial NifS suggesting a common mechanism for sulphur mobilization and transfer. ; Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidas [...] (819 aa) | ||||||||||
(Arabidopsis thaliana) | |||||||||||
Predicted Functional Partners: | |||||||||||
| ABA2 | ABA2 (ABA DEFICIENT 2); alcohol dehydrogenase/ oxidoreductase/ xanthoxin dehydrogenase; Encodes [...] (285 aa) | • | 0.966 | ||||||||
| ABA1 | ABA1 (ABA DEFICIENT 1); zeaxanthin epoxidase; Encodes a single copy zeaxanthin epoxidase gene t [...] (667 aa) | • | 0.925 | ||||||||
| AAO3 | AAO3 (Abscisic ALDEHYDE OXIDASE 3); abscisic aldehyde oxidase/ aldehyde oxidase/ indole-3-aceta [...] (1332 aa) | • | • | 0.924 | |||||||
| AAO1 | AAO1 (ARABIDOPSIS ALDEHYDE OXIDASE 1); aldehyde oxidase/ indole-3-acetaldehyde oxidase; Encodes [...] (1368 aa) | • | 0.923 | ||||||||
| B73 | B73; molybdenum ion binding; Involved in molybdenum cofactor (Moco) biosynthesis, inserting Mo [...] (670 aa) | • | • | 0.906 | |||||||
| XDH2 | XDH2 (XXANTHINE DEHYDROGENASE 2); FAD binding / catalytic/ electron carrier/ iron ion binding / [...] (1353 aa) | • | 0.883 | ||||||||
| NCED3 | NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3); 9-cis-epoxycarotenoid dioxygenase; Encodes 9- | • | 0.873 | ||||||||
| ABI4 | ABI4 (ABA INSENSITIVE 4); DNA binding / transcription factor; encodes a member of the DREB subf [...] (328 aa) | • | 0.871 | ||||||||
| ABI5 | ABI5 (ABA INSENSITIVE 5); DNA binding / transcription activator/ transcription factor; Encodes [...] (442 aa) | • | 0.813 | ||||||||
| FRS1 | FRS1 (FAR1-related sequence 1); zinc ion binding; FAR1-related sequence 1 (FRS1); FUNCTIONS IN- [...] (687 aa) | • | 0.679 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 508 | |||
| PLN02724 | 805 | PLN02724, PLN02724, Molybdenum cofactor sulfurase | 0.0 | |
| COG0520 | 405 | COG0520, csdA, Selenocysteine lyase/Cysteine desul | 5e-35 | |
| pfam00266 | 370 | pfam00266, Aminotran_5, Aminotransferase class-V | 7e-26 | |
| TIGR01977 | 376 | TIGR01977, am_tr_V_EF2568, cysteine desulfurase fa | 2e-16 | |
| TIGR01979 | 403 | TIGR01979, sufS, cysteine desulfurases, SufSfamily | 2e-14 | |
| COG1104 | 386 | COG1104, NifS, Cysteine sulfinate desulfinase/cyst | 2e-11 | |
| cd06453 | 373 | cd06453, SufS_like, Cysteine desulfurase (SufS)-li | 1e-09 | |
| TIGR02006 | 402 | TIGR02006, IscS, cysteine desulfurase IscS | 2e-09 | |
| cd06453 | 373 | cd06453, SufS_like, Cysteine desulfurase (SufS)-li | 2e-07 | |
| TIGR03235 | 353 | TIGR03235, DNA_S_dndA, cysteine desulfurase DndA | 3e-07 | |
| TIGR03392 | 398 | TIGR03392, FeS_syn_CsdA, cysteine desulfurase, cat | 3e-06 | |
| PLN02651 | 364 | PLN02651, PLN02651, cysteine desulfurase | 4e-06 | |
| TIGR03402 | 379 | TIGR03402, FeS_nifS, cysteine desulfurase NifS | 4e-06 | |
| PRK10874 | 401 | PRK10874, PRK10874, cysteine sulfinate desulfinase | 6e-05 | |
| PRK10874 | 401 | PRK10874, PRK10874, cysteine sulfinate desulfinase | 2e-04 | |
| PRK14012 | 404 | PRK14012, PRK14012, cysteine desulfurase; Provisio | 4e-04 | |
| TIGR03392 | 398 | TIGR03392, FeS_syn_CsdA, cysteine desulfurase, cat | 5e-04 | |
| PLN02855 | 424 | PLN02855, PLN02855, Bifunctional selenocysteine ly | 0.001 | |
| TIGR03403 | 382 | TIGR03403, nifS_epsilon, cysteine desulfurase, Nif | 0.003 | |
| PRK14012 | 404 | PRK14012, PRK14012, cysteine desulfurase; Provisio | 0.004 |
| >gnl|CDD|215384 PLN02724, PLN02724, Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Score = 833 bits (2153), Expect = 0.0
Identities = 325/486 (66%), Positives = 385/486 (79%), Gaps = 10/486 (2%)
Query: 6 KEEFLKEFGEDYGYPNAPKSIDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFT 65
KE FLKEFG YGYP+ PK ID++RATEF RL G VYLDHAGATLYSE Q+EA DF+
Sbjct: 1 KESFLKEFGGYYGYPDGPKPIDELRATEFARL-KGVVYLDHAGATLYSESQLEAALADFS 59
Query: 66 TNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPW 125
+NVYGNPHSQSD S+ + D + +AR+QVL+YFNA DY C+FTSGATAALKLVGE FPW
Sbjct: 60 SNVYGNPHSQSDSSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATAALKLVGETFPW 119
Query: 126 SHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQ 185
S +S + YT+ENHNSVLGIREYAL +GAAA A+D+EEA + S+ S + +Q
Sbjct: 120 SSESHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQ---GSVVVKSRGLQ 176
Query: 186 RRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK-GRW 244
RR + +R+ G+AYNLFAFPSECNFSG++F LDL+ ++K N + S FSK GRW
Sbjct: 177 RRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDN-----QHSNFSKSGRW 231
Query: 245 MVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGG 304
MVL+DAAKGC T PPDLS+YP DFVV+SFYKIFGYPTGLGAL++R DAAKLLK YF GG
Sbjct: 232 MVLLDAAKGCGTSPPDLSRYPADFVVVSFYKIFGYPTGLGALLVRRDAAKLLKKKYFGGG 291
Query: 305 TVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMY 364
TVAASIADIDFVKRR+ VE+ FEDGT SFLSIA++RHGF L+N LT+ AI H +L Y
Sbjct: 292 TVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTISAIAMHTWALTHY 351
Query: 365 VRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLS 424
V L +L+H NGA VC +YG +T ++ +H G +V+FNLKR DGSW G+REVEKLASLS
Sbjct: 352 VANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVEKLASLS 411
Query: 425 GIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMST 484
GIQLRTGCFCNPGACAKYLGLSH DL +N EAGHVCWDD D+IHG+PTGA+RVSFGYMST
Sbjct: 412 GIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMST 471
Query: 485 FEDAKV 490
FED +
Sbjct: 472 FEDCQK 477
|
Length = 805 |
| >gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 5e-35
Identities = 113/486 (23%), Positives = 179/486 (36%), Gaps = 123/486 (25%)
Query: 26 IDQIRATEFKRLEN----GTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHS-QSDISL 80
+ +RA +F L+ VYLD+A + + ++A+ ++ N H ++
Sbjct: 5 VAAVRA-DFPALKREVGKPLVYLDNAATSQKPQAVLDAV-AEYYRRYNANVHRGAHTLAE 62
Query: 81 ATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQ------SSYMYT 134
D+ AARE V + NA D + +FT G T AL LV S + S
Sbjct: 63 EATDLYEAAREAVARFLNADSSD-EIVFTRGTTEALNLVARGLGRSLKPGDEIVVS---D 118
Query: 135 MENHNSVLGIREYALSQGAAAFAIDVEEA-VDNDGL-----SESLVT-STKISLLPIQRR 187
+E+H++++ +E A GA V +D+DGL E L+T TK
Sbjct: 119 LEHHSNIVPWQELAKRTGA-----KVRVIPLDDDGLLDLDALEKLITPKTK--------- 164
Query: 188 KGASFPERDPAGDAYNLFAFPSECNFSGSRFNL-DLINIMKKNPERILEISPFSKGRWMV 246
L A N +G+ + ++ + ++ G V
Sbjct: 165 ----------------LVALSHVSNVTGTVNPVKEIAELAHEH------------GAL-V 195
Query: 247 LIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTV 306
L+DAA+ P D+ + DF+ S +K PTG+G L +R + + L+ GG
Sbjct: 196 LVDAAQAAGHLPIDVQELGCDFLAFSGHKWLLGPTGIGVLYVRKELLEELEPFLGGGGM- 254
Query: 307 AASIADIDFVKRRQGV-----EELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASL 361
I++V R +GV FE GT + + + + + + AI H L
Sbjct: 255 ------IEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHEREL 308
Query: 362 GMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLA 421
Y+ + L L IYG D G +VSFN+K +V L
Sbjct: 309 TEYLLEGLSEL------PGVEIYGP-----PDADRGGIVSFNVKGIHP-----HDVATLL 352
Query: 422 SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGY 481
GI +R G C + LG+ IR S
Sbjct: 353 DEKGIAVRAGHHCAQPL-HRLLGV--------------------------DATIRASLHL 385
Query: 482 MSTFED 487
+T ED
Sbjct: 386 YNTEED 391
|
Length = 405 |
| >gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 7e-26
Identities = 104/457 (22%), Positives = 170/457 (37%), Gaps = 102/457 (22%)
Query: 42 VYLDHAGATLYSELQMEAIFRDFTTNVYGNPHS-QSDISLATCDIVRAAREQVLDYFNAS 100
+YLD A T + ++A+ +++ T+ GN H + ARE+V ++ NA
Sbjct: 1 IYLDSAATTQKPQAVLDAL-QEYYTDYNGNVHRGVHHLGKEATQAYEEAREKVAEFINAP 59
Query: 101 MKDYKCIFTSGATAALKLV--GEAFPWSHQSSYMYT-MENHNSVLGIREYALSQGAAAFA 157
D + IFTSG T A+ LV + T ME+H +++ +E A GA
Sbjct: 60 -SDEEIIFTSGTTEAINLVAISLGRSLKPGDEILVTEMEHHANLVPWQELAKRTGATVRV 118
Query: 158 IDVEE--AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSG 215
I V+ +D D L + L TK L A N +G
Sbjct: 119 IPVDPNGLLDLDALEKLLTPRTK-------------------------LVAITHVSNVTG 153
Query: 216 SRFNL-DLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFY 274
+ + ++ + + L V++DAA+ +P D+ VDF+ S +
Sbjct: 154 TVNPVEEIGKLAHEY--GAL-----------VVVDAAQAVGHRPIDVQALGVDFLAFSGH 200
Query: 275 KIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRR-QGVEELFEDGTASF 333
K++G PTG+G L R D + L GG I + + FE GT +
Sbjct: 201 KLYG-PTGIGVLYGRRDLLEKLPPLLGGGGM----IDTVSLQETTFADAPSKFEAGTPNI 255
Query: 334 LSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSY 393
I + + + + + AI +H L Y+ + LL++ +YG
Sbjct: 256 AGIIGLGAALDYLAEIGLEAIEKHERELAAYLYERLLAIPG------IRLYGP-----PA 304
Query: 394 HDTGSMVSFNLKRPDGSWFGYREVEKLASL---SGIQLRTGCFCNPGACAKYLGLSHSDL 450
S++SFN F +A+L GI +R+G C LGL
Sbjct: 305 ERRPSIISFN--------FPGVHPHDVATLLDERGIAVRSGHHCAQPLM-VRLGL----- 350
Query: 451 LSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFED 487
G +R S + +T E+
Sbjct: 351 ---------------------GGTLRASLYFYNTEEE 366
|
This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370 |
| >gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 2e-16
Identities = 109/451 (24%), Positives = 163/451 (36%), Gaps = 91/451 (20%)
Query: 42 VYLDHAGATLYSELQ--MEAIFRDFTTNVYGNP-HSQSDISLATCDIVRAAREQVLDYFN 98
+Y D+A AT Y + EA+ DF N G+P + ++L V R+ + FN
Sbjct: 1 IYFDNA-ATTYPKPDEVYEAMA-DFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFN 58
Query: 99 ASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAI 158
A +FT+ AT AL + + ME HNSV E Q I
Sbjct: 59 APSS-AHVVFTNNATTALNIALKGLLKEGDHVITTPME-HNSVARPLECLKEQIGVEITI 116
Query: 159 DVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRF 218
DN+GL IS I+R + + L N +G+
Sbjct: 117 ---VKCDNEGL---------ISPERIKR----AIKT-NTK-----LIVVSHASNVTGTIL 154
Query: 219 NLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFG 278
++ I + + E + F ++DAA+ P D+++ +D + + +K
Sbjct: 155 PIEEIGELAQ--ENGI---FF-------ILDAAQTAGVIPIDMTELAIDMLAFTGHKGLL 202
Query: 279 YPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVE--ELFEDGTASFLSI 336
P G G L +R LK SGGT + S A ID Q E + FE GT + I
Sbjct: 203 GPQGTGGLYIREGIK--LKP-LKSGGTGSHS-ALID-----QPSELPDRFESGTLNTPGI 253
Query: 337 ASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDT 396
A + G I + + I + L + L + IYG +
Sbjct: 254 AGLNAGIKFIEKIGIANIAKKECMLTEKLLNGL------REINKVKIYGPADPA----NR 303
Query: 397 GSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEA 456
+VSF ++ D + L I RTG C P L+H
Sbjct: 304 VGVVSFTVEGIDSEEVA----DILDEKFDIATRTGLHCAP--------LAHK-------- 343
Query: 457 GHVCWDDNDIIHGKPTGAIRVSFGYMSTFED 487
I TG IR+S GY +T E+
Sbjct: 344 ---------TIGTFATGTIRLSLGYFNTEEE 365
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown [Unknown function, Enzymes of unknown specificity]. Length = 376 |
| >gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 2e-14
Identities = 101/476 (21%), Positives = 173/476 (36%), Gaps = 116/476 (24%)
Query: 34 FKRLENGT--VYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQS-DISLATCDIVRAAR 90
KR NG VYLD A + + ++A+ ++ N N H +S+ + A R
Sbjct: 10 LKRKINGKPLVYLDSAATSQKPQQVIDAV-AEYYRNSNANVHRGIHTLSVRATEAYEAVR 68
Query: 91 EQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSS----YMYTMENHNSVLGIRE 146
E+V + NA+ D + +FT G T ++ LV ++ S+ + + ME+H +++ +
Sbjct: 69 EKVAKFINAA-SDEEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQL 127
Query: 147 YALSQGAAAFAIDVEE--AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNL 204
A GA I +++ +D D L + L TK L
Sbjct: 128 LAERTGATLKFIPLDDDGTLDLDDLEKLLTEKTK-------------------------L 162
Query: 205 FAFPSECNFSGSRFNL-DLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSK 263
A N G+ + ++ + + VL+D A+ P D+
Sbjct: 163 VAITHVSNVLGTVNPVEEIAKLAHQVGA-------------KVLVDGAQAVPHMPVDVQA 209
Query: 264 YPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNT--YFSGGTVAASIADIDFVKRRQG 321
DF V S +K++G PTG+G L + +LL+ + GG + I V
Sbjct: 210 LDCDFYVFSGHKMYG-PTGIGVLYGK---EELLEQMPPFLGGGEM------IAEV----S 255
Query: 322 VEEL--------FEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLR 373
EE FE GT + + + + + ++ + I H L Y + L +
Sbjct: 256 FEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGEI- 314
Query: 374 HENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCF 433
IYG + D G ++SFN++ +V + GI +R+G
Sbjct: 315 -----PGLRIYGPRDA----EDRGGIISFNVEGVHPH-----DVGTILDEEGIAVRSGHH 360
Query: 434 CNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAK 489
C + G+ C R SF +T ED
Sbjct: 361 CAQPLM-RRFGV-----------PATC---------------RASFYIYNTEEDID 389
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 403 |
| >gnl|CDD|224029 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 2e-11
Identities = 109/464 (23%), Positives = 160/464 (34%), Gaps = 119/464 (25%)
Query: 41 TVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS 100
+YLD+A T +EA+ + T V+GNP S V AREQ+ A
Sbjct: 2 MIYLDNAATTPVDPEVLEAM-LPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGA- 59
Query: 101 MKDYKCIFTSGAT----AALKLVGEAFPWSHQSSYMYT--MENHNSVLGIREYALSQGAA 154
+ IFTSGAT A+K A+ + + ++ T +E H +VL Y QG
Sbjct: 60 -DPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIE-HPAVLNTCRYLERQGFE 117
Query: 155 AFAIDVEEA--VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECN 212
+ V+ VD + L E+L T
Sbjct: 118 VTYLPVDSNGLVDLEQLEEALRPDTI---------------------------------- 143
Query: 213 FSGSRFNLDLINIMKKNPE-----RILEISPFSKGRWMVL-IDAAKGCVTQPPDLSKYPV 266
L++IM N E I EI K R ++ +DA + P DL + V
Sbjct: 144 ---------LVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAVGKIPIDLEELGV 194
Query: 267 DFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELF 326
D + S +K G P G+GAL +R L+ GG R G E +
Sbjct: 195 DLLSFSAHKFGG-PKGIGALYVRPGVR--LEPLIHGGG---------QERGLRSGTENV- 241
Query: 327 EDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGT 386
G F A I L + L + LL + + G
Sbjct: 242 -PGIVGFGKAAEIAV-EEL------EEENARLRKLRDRLEDGLLEI-----IPDVYLNGD 288
Query: 387 YTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLA---SLSGIQLRTGCFCNPGACAKYL 443
+ ++F+ F E E L L+GI + TG C+ + L
Sbjct: 289 DEPRLPNI-----LNFS--------FPGVEGESLLLALDLAGIAVSTGSACS----SGSL 331
Query: 444 GLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFED 487
SH L + G ++ H G+IR S G +T E+
Sbjct: 332 EPSHV--LRAM--GI----SEELAH----GSIRFSLGRFTTEEE 363
|
Length = 386 |
| >gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 1e-09
Identities = 55/247 (22%), Positives = 88/247 (35%), Gaps = 58/247 (23%)
Query: 246 VLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNT--YFSG 303
VL+D A+ P D+ DF+ S +K+ G PTG+G L + + LL+ Y G
Sbjct: 172 VLVDGAQSAGHMPVDVQDLGCDFLAFSGHKMLG-PTGIGVLYGKEE---LLEEMPPYGGG 227
Query: 304 GTVAASIADIDFVKRRQGVEEL---FEDGTASFLSIASIRHGFNLINSLTVPAICRHIAS 360
G + ++ + +L FE GT + + + + + + AI H
Sbjct: 228 GEMIEEVSFEETT-----YADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHE 282
Query: 361 LGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKL 420
L Y + L + +YG D +VSFNL+ +V +
Sbjct: 283 LTAYALERLSEIPGV------RVYGDAE------DRAGVVSFNLEGIHPH-----DVATI 325
Query: 421 ASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFG 480
GI +R G C + LG G +R SFG
Sbjct: 326 LDQYGIAVRAGHHCAQPLM-RRLG--------------------------VPGTVRASFG 358
Query: 481 YMSTFED 487
+T E+
Sbjct: 359 LYNTEEE 365
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. Length = 373 |
| >gnl|CDD|131061 TIGR02006, IscS, cysteine desulfurase IscS | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 2e-09
Identities = 61/258 (23%), Positives = 102/258 (39%), Gaps = 55/258 (21%)
Query: 42 VYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQS-DISLATCDIVRAAREQVLDYFNAS 100
+YLD+A T E + T +GNP S+S + V AR QV + A
Sbjct: 5 IYLDYAATTPVDPRVAEKMMPYLTEK-FGNPASRSHSFGWEAEEAVENARNQVAELIGAD 63
Query: 101 MKDYKCIFTSGATAA--LKLVGEAFPWSHQSSYMYTMEN-HNSVLGIREYALSQGAAAFA 157
++ +FTSGAT + L + G A + + +++ T + H +VL Y +G
Sbjct: 64 SRE--IVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTY 121
Query: 158 IDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSR 217
+ + +GL + I R
Sbjct: 122 LPPKS----NGLIDLEELKAAI-------------------------------------R 140
Query: 218 FNLDLINIMKKNPE-----RILEISPFSKGRWMVL-IDAAKGCVTQPPDLSKYPVDFVVM 271
+ L++IM N E I I + R + +DAA+ P ++++ VD + +
Sbjct: 141 DDTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKIPINVNELKVDLMSI 200
Query: 272 SFYKIFGYPTGLGALIMR 289
S +KI+G P G+GAL +R
Sbjct: 201 SGHKIYG-PKGIGALYVR 217
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Protein synthesis, tRNA and rRNA base modification]. Length = 402 |
| >gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 2e-07
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 15/109 (13%)
Query: 42 VYLDHAGATLYSELQMEAIFRDFTTNVYGNPH-SQSDISLATCDIVRAAREQVLDYFNAS 100
VYLD+A + + ++AI D+ + N H ++S D AARE+V + NA
Sbjct: 1 VYLDNAATSQKPQPVIDAI-VDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAP 59
Query: 101 MKDYKCIFTSGATAALKLVGEAFPWSHQ-------SSYMYTMENHNSVL 142
D + IFT T A+ LV +++ S ME H+S +
Sbjct: 60 SPD-EIIFTRNTTEAINLVAYGLGRANKPGDEIVTS----VME-HHSNI 102
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. Length = 373 |
| >gnl|CDD|163191 TIGR03235, DNA_S_dndA, cysteine desulfurase DndA | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 3e-07
Identities = 62/261 (23%), Positives = 100/261 (38%), Gaps = 62/261 (23%)
Query: 43 YLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQS-DISLATCDIVRAAREQVLDYFNASM 101
YLDH AT + + + +GNP S++ + V AR+QV + A
Sbjct: 1 YLDHN-ATTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADT 59
Query: 102 KDYKCIFTSGATAA--LKLVGEAFPWSHQSSYMY---TMENHNSVLGIREYALSQGAAAF 156
++ IFTSGAT + L ++G A Q + + H +VL G
Sbjct: 60 EE--VIFTSGATESNNLAILGLA-RAGEQKGKKHIITSAIEHPAVLEPIRALERNGFTVT 116
Query: 157 AIDVEEA--VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFS 214
+ V+E+ +D D L++++ T
Sbjct: 117 YLPVDESGRIDVDELADAIRPDTL------------------------------------ 140
Query: 215 GSRFNLDLINIMKKNPE-----RILEISPFSKGRWMVL-IDAAKGCVTQPPDLSKYPVDF 268
L++IM N E I EI+ + +DAA+ DLS +D
Sbjct: 141 -------LVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKITVDLSADRIDL 193
Query: 269 VVMSFYKIFGYPTGLGALIMR 289
+ S +KI+G P G+GAL++R
Sbjct: 194 ISCSGHKIYG-PKGIGALVIR 213
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase [DNA metabolism, Restriction/modification]. Length = 353 |
| >gnl|CDD|132433 TIGR03392, FeS_syn_CsdA, cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 3e-06
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 33 EFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPH-SQSDISLATCDIVRAARE 91
+F L++GTVYLD A L + ++A + F G H SQ + + AR+
Sbjct: 9 QFPALQDGTVYLDSAATALKPQAVIDAT-QQFYRLSSGTVHRSQHQQAQSLTARYELARQ 67
Query: 92 QVLDYFNASMKDYKCIFTSGATAALKLVGEAF 123
QV + NA ++T G T ++ LV +++
Sbjct: 68 QVARFLNAP-DAENIVWTRGTTESINLVAQSY 98
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 398 |
| >gnl|CDD|178257 PLN02651, PLN02651, cysteine desulfurase | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 4e-06
Identities = 71/279 (25%), Positives = 102/279 (36%), Gaps = 68/279 (24%)
Query: 42 VYLDHAGAT-LYSEL--QMEAIFRDFTTNVYGNPHSQSDISLATC-DIVRAAREQVLDYF 97
+YLD T + + M F +GNPHS++ + D V AR QV
Sbjct: 1 LYLDMQATTPIDPRVLDAMLP----FLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALI 56
Query: 98 NASMKDYKCIFTSGATA----ALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGA 153
A K+ IFTSGAT A+K V + + + T H VL L Q
Sbjct: 57 GADPKE--IIFTSGATESNNLAIKGVMHFYK-DKKKHVITTQTEHKCVLD-SCRHLQQE- 111
Query: 154 AAFAIDVEE-AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECN 212
+V V +DGL D A
Sbjct: 112 ---GFEVTYLPVKSDGLV-------------------------DLDELA----------- 132
Query: 213 FSGSRFNLDLINIMKKNPERILEISPF-------SKGRWMVLIDAAKGCVTQPPDLSKYP 265
+ R + L+++M N E I I P + + + DAA+ P D+
Sbjct: 133 -AAIRPDTALVSVMAVNNE-IGVIQPVEEIGELCREKKVLFHTDAAQAVGKIPVDVDDLG 190
Query: 266 VDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGG 304
VD + +S +KI+G P G+GAL +R L+ SGG
Sbjct: 191 VDLMSISGHKIYG-PKGVGALYVRRRPRVRLEP-LMSGG 227
|
Length = 364 |
| >gnl|CDD|132443 TIGR03402, FeS_nifS, cysteine desulfurase NifS | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 4e-06
Identities = 65/262 (24%), Positives = 99/262 (37%), Gaps = 65/262 (24%)
Query: 42 VYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASM 101
+YLD+ T +EA+ + T +GNP S V AREQV A
Sbjct: 1 IYLDNNATTRVDPEVLEAM-LPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAE- 58
Query: 102 KDYKCIFTSGAT----AALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFA 157
+ IFTSG T A+K A P + + T H +VL + ++ QG
Sbjct: 59 -PDEIIFTSGGTESDNTAIKSALAAQP--EKRHIITTAVEHPAVLSLCQHLEKQGYKVTY 115
Query: 158 IDVEEA--VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSG 215
+ V+E +D + L ++ T
Sbjct: 116 LPVDEEGRLDLEELRAAITDDTA------------------------------------- 138
Query: 216 SRFNLDLINIMKKNPER-----ILEISPFSKGRWMVL-IDA--AKGCVTQPPDLSKYPVD 267
L+++M N E I EI +K R + DA A G + P DL + +D
Sbjct: 139 ------LVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGKI--PIDLKEMNID 190
Query: 268 FVVMSFYKIFGYPTGLGALIMR 289
+ +S +K+ G P G+GAL +R
Sbjct: 191 MLSLSGHKLHG-PKGVGALYIR 211
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. Length = 379 |
| >gnl|CDD|182799 PRK10874, PRK10874, cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 6e-05
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 28 QIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPH-SQSDISLATCDIV 86
Q RA +F L++ VYLD A L + +EA + F + GN H SQ +
Sbjct: 8 QFRA-QFPALQDAGVYLDSAATALKPQAVIEAT-QQFYSLSAGNVHRSQFAAAQRLTARY 65
Query: 87 RAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAF 123
AAREQV NA ++T G T ++ LV +++
Sbjct: 66 EAAREQVAQLLNAP-DAKNIVWTRGTTESINLVAQSY 101
|
Length = 401 |
| >gnl|CDD|182799 PRK10874, PRK10874, cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 246 VLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGAL 286
V++D A+G V P D+ +DF S +K++G PTG+G L
Sbjct: 193 VMVDGAQGAVHFPADVQALDIDFYAFSGHKLYG-PTGIGVL 232
|
Length = 401 |
| >gnl|CDD|184450 PRK14012, PRK14012, cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 4e-04
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 42 VYLDHAGATLYSELQMEAIFRDFTTN-VYGNPHSQSD-ISLATCDIVRAAREQVLDYFNA 99
+YLD++ T E + T + +GNP S+S + V AR Q+ D A
Sbjct: 5 IYLDYSATTPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGA 64
Query: 100 SMKDYKCIFTSGAT 113
++ +FTSGAT
Sbjct: 65 DPRE--IVFTSGAT 76
|
Length = 404 |
| >gnl|CDD|132433 TIGR03392, FeS_syn_CsdA, cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 5e-04
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 11/69 (15%)
Query: 245 MVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRND----------AAK 294
+V++D A+G V PPD+ +DF S +K++G PTG+G L + + K
Sbjct: 189 VVVVDGAQGVVHGPPDVQALDIDFYAFSGHKLYG-PTGIGVLYGKTELLEAMPPWQGGGK 247
Query: 295 LLKNTYFSG 303
+L + F G
Sbjct: 248 MLSHVSFDG 256
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 398 |
| >gnl|CDD|215460 PLN02855, PLN02855, Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 63/262 (24%), Positives = 110/262 (41%), Gaps = 57/262 (21%)
Query: 42 VYLDHAGATLYSELQMEAI---FRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN 98
VYLD+A + ++A+ + ++ +NV+ H+ S + AT D AR++V + N
Sbjct: 34 VYLDNAATSQKPAAVLDALQDYYEEYNSNVHRGIHALS--AKAT-DAYELARKKVAAFIN 90
Query: 99 ASMKDYKCIFTSGATAALKLVGEAFPWSHQS------SYMYTMENHNSVLGIREYALSQG 152
AS + +FT AT A+ LV A+ W + + E+H++++ + A G
Sbjct: 91 AS-TSREIVFTRNATEAINLV--AYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTG 147
Query: 153 AAAFAIDV--EEAVDNDGLSESLVTSTK-ISLLPIQRRKGASFPERDPAGDAYNLFAFPS 209
A + + +E +D + L E L TK ++ + G+ P D A+ + A
Sbjct: 148 AVLKFVGLTPDEVLDVEQLKELLSEKTKLVATHHVSNVLGSILPVEDIVHWAHAVGA--- 204
Query: 210 ECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFV 269
VL+DA + P D+ DF+
Sbjct: 205 -----------------------------------KVLVDACQSVPHMPVDVQTLGADFL 229
Query: 270 VMSFYKIFGYPTGLGALIMRND 291
V S +K+ G PTG+G L ++D
Sbjct: 230 VASSHKMCG-PTGIGFLWGKSD 250
|
Length = 424 |
| >gnl|CDD|132444 TIGR03403, nifS_epsilon, cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.003
Identities = 63/262 (24%), Positives = 101/262 (38%), Gaps = 59/262 (22%)
Query: 42 VYLDHAGATLYSEL---QMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN 98
VYLD+ T+ M+ F D +YGNP+S AT + A +++ N
Sbjct: 1 VYLDNNATTMLDPKVKELMDPFFCD----IYGNPNSLHQFGTATHPAIAEALDKLYKGIN 56
Query: 99 ASMKDYKCIFTSGATAALKLVGEAFPWSHQSSY----MYTMENHNSVLGIREYALSQGAA 154
A D I TS AT E+ W + Y + +NH + E+ +
Sbjct: 57 ARDLD-DIIITSCAT-------ESNNWVLKGVYFDEILKGGKNH-IITTEVEHPAVRATC 107
Query: 155 AFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFS 214
AF +++ G+ +++ LPI + + A + +E
Sbjct: 108 AF-------LESLGV--------EVTYLPINEQGTIT---------AEQVREAITE---- 139
Query: 215 GSRFNLDLINIMKKNPER-----ILEISPFSKGRWMVL-IDAAKGCVTQPPDLSKYPVDF 268
L+++M N E I EI K R ++ DA + P D+ K VDF
Sbjct: 140 ----KTALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKIPVDVQKAGVDF 195
Query: 269 VVMSFYKIFGYPTGLGALIMRN 290
+ S +K G P G+G L +R
Sbjct: 196 LSFSAHKFHG-PKGVGGLYIRK 216
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PMID:11123951), so we use this designation. Length = 382 |
| >gnl|CDD|184450 PRK14012, PRK14012, cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.004
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 222 LINIMKKNPE-----RILEISPFSKGRWMVL-IDAAKGCVTQPPDLSKYPVDFVVMSFYK 275
L++IM N E I I + R ++ +DAA+ P DLSK VD + S +K
Sbjct: 147 LVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKVPIDLSKLKVDLMSFSAHK 206
Query: 276 IFGYPTGLGALIMR 289
I+G P G+GAL +R
Sbjct: 207 IYG-PKGIGALYVR 219
|
Length = 404 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 508 | |||
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 100.0 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 100.0 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 100.0 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 100.0 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 100.0 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 100.0 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 100.0 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 100.0 | |
| PLN02651 | 364 | cysteine desulfurase | 100.0 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 100.0 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 100.0 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 100.0 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 100.0 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 100.0 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 100.0 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 100.0 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 100.0 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 100.0 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 100.0 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 100.0 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 100.0 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 100.0 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 100.0 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 100.0 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 100.0 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 100.0 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 100.0 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 100.0 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 100.0 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 100.0 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 100.0 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 100.0 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 100.0 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 100.0 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 100.0 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 100.0 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.98 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.98 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.97 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.97 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.97 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.97 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.97 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.97 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.96 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.96 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.96 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 99.96 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.96 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.96 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.96 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.96 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.96 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.96 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.96 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 99.95 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.95 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.95 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.95 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 99.95 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.95 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 99.95 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 99.95 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.95 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.95 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.95 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.95 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.95 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.95 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.95 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.95 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.95 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.94 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.94 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.94 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.94 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 99.94 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 99.94 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 99.94 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.94 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 99.94 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.94 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.94 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.94 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.94 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.94 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.93 | |
| PLN02263 | 470 | serine decarboxylase | 99.93 | |
| PRK07337 | 388 | aminotransferase; Validated | 99.93 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.93 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 99.93 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.93 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 99.93 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 99.93 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.93 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.93 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 99.93 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 99.93 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.93 | |
| PRK07682 | 378 | hypothetical protein; Validated | 99.93 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 99.93 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 99.93 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.93 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 99.93 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.93 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.93 | |
| PRK07324 | 373 | transaminase; Validated | 99.93 | |
| PLN02721 | 353 | threonine aldolase | 99.93 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.93 | |
| PLN02187 | 462 | rooty/superroot1 | 99.93 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.93 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 99.93 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 99.93 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 99.93 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.93 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 99.93 | |
| PRK09148 | 405 | aminotransferase; Validated | 99.92 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.92 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.92 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.92 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.92 | |
| PRK08068 | 389 | transaminase; Reviewed | 99.92 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.92 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.92 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.92 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 99.92 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.92 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 99.92 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 99.92 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.92 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.92 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.92 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.92 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 99.92 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.92 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.92 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 99.92 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.92 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 99.92 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.92 | |
| PLN02656 | 409 | tyrosine transaminase | 99.92 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 99.92 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.92 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 99.92 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.92 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.92 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.92 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.92 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.92 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 99.92 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.92 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 99.91 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.91 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.91 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 99.91 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 99.91 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.91 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 99.91 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 99.91 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 99.91 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 99.91 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 99.91 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 99.91 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.91 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.9 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.9 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.9 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.9 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.9 | |
| PRK06855 | 433 | aminotransferase; Validated | 99.9 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.9 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 99.89 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.89 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.89 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.89 | |
| PLN02231 | 534 | alanine transaminase | 99.89 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.89 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.89 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 99.89 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.89 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.88 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.88 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.88 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.88 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.88 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.88 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.88 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.88 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.88 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.87 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.87 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.87 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.87 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.87 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.87 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.87 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.87 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.87 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.87 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.87 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.87 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.86 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.86 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.86 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.86 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.86 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.86 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 99.86 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 99.86 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.86 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.86 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.86 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.86 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.86 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.86 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.85 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.85 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.85 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.85 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.85 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.85 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.85 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.85 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.85 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.85 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.85 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.84 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.84 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.84 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.84 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 99.84 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.84 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 99.83 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 99.83 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.83 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.83 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.82 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.82 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.82 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.82 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.82 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.81 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.81 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 99.81 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.8 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.8 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 99.8 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.8 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.8 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.8 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.8 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.8 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.8 | |
| PLN02368 | 407 | alanine transaminase | 99.79 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.79 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 99.79 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 99.79 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.79 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.79 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.78 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.78 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.78 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.78 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.77 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.77 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.76 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.76 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.75 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.75 | |
| PLN02397 | 423 | aspartate transaminase | 99.74 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.74 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.73 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.72 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.71 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.71 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 99.7 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.7 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.7 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 99.69 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.68 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.68 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.68 | |
| KOG2142 | 728 | consensus Molybdenum cofactor sulfurase [Coenzyme | 99.67 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.67 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 99.67 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.67 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.66 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.66 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.64 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.64 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.64 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.63 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.61 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.61 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.59 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 99.59 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.58 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.57 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.57 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.57 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 99.57 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.57 | |
| KOG2790 | 370 | consensus Phosphoserine aminotransferase [Coenzyme | 99.56 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.55 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.55 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.55 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.54 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.53 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.53 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 99.52 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.51 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.5 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.5 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.5 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.5 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.49 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.49 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.49 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.48 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.47 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.47 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.46 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.46 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.46 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.45 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.44 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.44 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.43 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.43 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.42 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.42 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.42 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.4 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.4 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.39 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 99.39 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.39 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 99.38 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.38 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.38 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.37 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.37 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.37 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.36 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.36 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.36 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.35 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.35 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 99.35 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 99.34 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.34 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.34 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.33 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.32 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 99.32 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.32 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.31 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.31 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.3 | |
| PRK07046 | 453 | aminotransferase; Validated | 99.29 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 99.29 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 99.28 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.28 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.27 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.26 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.26 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 99.26 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 99.23 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 99.22 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 99.22 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.21 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 99.21 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 99.09 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 99.06 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 99.03 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 99.02 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 99.02 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 98.99 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 98.99 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 98.96 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 98.8 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 98.78 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 98.69 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 98.55 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 98.48 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 98.47 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 98.43 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 97.71 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 97.61 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 97.1 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 95.74 | |
| KOG2142 | 728 | consensus Molybdenum cofactor sulfurase [Coenzyme | 93.38 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 92.51 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 88.77 |
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-61 Score=538.33 Aligned_cols=469 Identities=67% Similarity=1.114 Sum_probs=394.1
Q ss_pred HHHHHHHhcccCCCCCCCCchHHHHHHhhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHH
Q 010538 6 KEEFLKEFGEDYGYPNAPKSIDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDI 85 (508)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (508)
+..||.+|.+.|.++..+.+++.+|..+||.+ ++++||||++++++++.++++++..+..+.++||++.+..+..+.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~R~~~fp~l-~~~iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~ 79 (805)
T PLN02724 1 KESFLKEFGGYYGYPDGPKPIDELRATEFARL-KGVVYLDHAGATLYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDT 79 (805)
T ss_pred ChhHHhhhcccCCcccchhhHHHHHHHHhhhc-CCCEeEeCCCCCCCCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHH
Confidence 35799999988999887778999995589999 78999999999998888888877777777788999766667778889
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC---
Q 010538 86 VRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE--- 162 (508)
Q Consensus 86 ~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~--- 162 (508)
++++|+.+|+++|+++++|+|+||+|+|+|+++++.++.+++|++|+++..+|+++..|.+.+++.|++++.++++.
T Consensus 80 ~e~aR~~ia~~lga~~~~~~VvFtsnaT~alnlva~~l~~~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~ 159 (805)
T PLN02724 80 IESARQQVLEYFNAPPSDYACVFTSGATAALKLVGETFPWSSESHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAAN 159 (805)
T ss_pred HHHHHHHHHHHhCCCccceEEEEeCChHHHHHHHHHHCCCCCCCeEEEeeccccchHHHHHHHHHcCCeEEeccchhccc
Confidence 99999999999999887567999999999999999999889999999999999999999888888999999998862
Q ss_pred -----ccCccccccccccccccccchhhhhcCCCC----CCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccc
Q 010538 163 -----AVDNDGLSESLVTSTKISLLPIQRRKGASF----PERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERI 233 (508)
Q Consensus 163 -----~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l----~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~ 233 (508)
.+.++ .+.++++ +.+ ......+++|++|+++|++|.||.++|++.|..+++.
T Consensus 160 ~~~~~~g~~~-------------~~~~~l~--~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~---- 220 (805)
T PLN02724 160 QPTNSQGSVV-------------VKSRGLQ--RRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDN---- 220 (805)
T ss_pred cccccccccc-------------cchhhhh--hhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHh----
Confidence 22221 0123444 322 1111124678999999999999999999987665552
Q ss_pred cccCCCCCC-----CeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEe
Q 010538 234 LEISPFSKG-----RWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAA 308 (508)
Q Consensus 234 ~~~~~~~~~-----g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~ 308 (508)
+..+ ++++++|++|++|+.|+|+.++++||+++|+|||+|+|.|+|+||++++.++.+.|.++||+++..
T Consensus 221 -----~~~~~~~~g~~~v~vDaaQ~~g~~piDv~~~~~Dfl~~S~HK~~GgP~G~G~L~vr~~~~~~l~p~~~GGg~~~~ 295 (805)
T PLN02724 221 -----QHSNFSKSGRWMVLLDAAKGCGTSPPDLSRYPADFVVVSFYKIFGYPTGLGALLVRRDAAKLLKKKYFGGGTVAA 295 (805)
T ss_pred -----cccccccCcceEEEeehhhhcCCCCCChhhcCCCEEEEecceeccCCCCceEEEEehhhhhhhcCCccCCCceEE
Confidence 1111 478999999999999999999999999999999999999999999999998889999999877654
Q ss_pred cccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCC
Q 010538 309 SIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYT 388 (508)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~ 388 (508)
+.....+.......+.+++.||+|+++++++.+|++++.+.|++.+.+|+..|++++.+.|++++|.++.++++++++..
T Consensus 296 ~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~ 375 (805)
T PLN02724 296 SIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHT 375 (805)
T ss_pred EecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCC
Confidence 43322232122335789999999999999999999999999999999999999999999999998777777899998742
Q ss_pred CCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccC
Q 010538 389 SEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIH 468 (508)
Q Consensus 389 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 468 (508)
...+...++++++|++.+.++..+++.++.+++.++||.+|.|++|+++.++.+||+++..+...+..+|.|++..+.++
T Consensus 376 ~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~ 455 (805)
T PLN02724 376 FKLEFHIQGPIVTFNLKRADGSWVGHREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIH 455 (805)
T ss_pred CCCCcccccCEEEEEEEcCCCCEeCHHHHHHHHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheec
Confidence 10011246899999999988887888888888889999999999999999988999988888888889999999999998
Q ss_pred CCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 469 GKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 469 ~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
+...|.||+|+++|||.+||++|+++|+++.
T Consensus 456 ~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~ 486 (805)
T PLN02724 456 GRPTGAVRVSFGYMSTFEDCQKFIDFIISSF 486 (805)
T ss_pred CcccceEEEEcCccCCHHHHHHHHHHHHHHh
Confidence 8767999999999999999999999999854
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-59 Score=482.23 Aligned_cols=393 Identities=25% Similarity=0.304 Sum_probs=342.3
Q ss_pred CchHHHHHHhhccCCC----CCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCC-ccchhhhhhHHHHHHHHHHHHHcC
Q 010538 24 KSIDQIRATEFKRLEN----GTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHS-QSDISLATCDIVRAAREQVLDYFN 98 (508)
Q Consensus 24 ~~~~~~r~~~f~~~~~----~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~~ 98 (508)
+++..+|+ +||.+.+ +++|||++++++.|..+++++.+ +...+++|++. .+..+....+.++++|+.+|+++|
T Consensus 3 ~~~~~~r~-~fp~l~~~~~~~~vylD~aa~~~~p~~V~~a~~~-~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~ 80 (405)
T COG0520 3 FDVAAVRA-DFPALKREVGKPLVYLDNAATSQKPQAVLDAVAE-YYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLN 80 (405)
T ss_pred CChHHHHh-hCHHHhhccCCCeEEecCcccccCCHHHHHHHHH-HHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhC
Confidence 56788998 9999954 36999999999988888888754 55567788885 456677788899999999999999
Q ss_pred CCC-CCceEEEcCChHHHHHHHHhhcC--CCCCCeEEEecccccch-HHHHHHHHhcCCeEEEEccCCccCccccccccc
Q 010538 99 ASM-KDYKCIFTSGATAALKLVGEAFP--WSHQSSYMYTMENHNSV-LGIREYALSQGAAAFAIDVEEAVDNDGLSESLV 174 (508)
Q Consensus 99 ~~~-~~~~i~~t~g~t~al~~~~~~l~--~~~g~~vl~~~~~h~s~-~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~ 174 (508)
+++ + +|+||+|+|+|++++..++. +++|++||+++.||++. .+|....++.|++++++|+++++.+
T Consensus 81 a~~~~--eIvft~~tT~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~g~~-------- 150 (405)
T COG0520 81 ADSSD--EIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLL-------- 150 (405)
T ss_pred CCCCC--eEEEeCChhHHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCCCCCc--------
Confidence 995 7 89999999999999999996 68889999999998875 5666677778999999999877777
Q ss_pred cccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC
Q 010538 175 TSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC 254 (508)
Q Consensus 175 ~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~ 254 (508)
+.++++ . .++++|++|+++|++|.||.+.|+++|.++||+ +|++++||++|++
T Consensus 151 -------~~~~~~--~------~i~~~Tklvais~vSn~tG~~~pv~~I~~la~~------------~ga~v~VDaaq~~ 203 (405)
T COG0520 151 -------DLDALE--K------LITPKTKLVALSHVSNVTGTVNPVKEIAELAHE------------HGALVLVDAAQAA 203 (405)
T ss_pred -------CHHHHH--H------hcCCCceEEEEECccccccccchHHHHHHHHHH------------cCCEEEEECcccc
Confidence 577888 3 347899999999999999999999999999998 9999999999999
Q ss_pred CCCCCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChh
Q 010538 255 VTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFL 334 (508)
Q Consensus 255 g~~~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 334 (508)
|+.|+|+.++++||+++|+|||++||.|+|+||+++++++.+.|...||++.........+ .....+.+++.||||+.
T Consensus 204 ~h~~idv~~l~~Df~afsgHKwl~gP~GiGvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~--~~~~~p~rfe~gTpn~~ 281 (405)
T COG0520 204 GHLPIDVQELGCDFLAFSGHKWLLGPTGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGV--TLAELPLRFEAGTPNIA 281 (405)
T ss_pred CccCCCchhcCCCEEEEcccccccCCCceEEEEEchHHHhhcCCcccCCCceeeecccccc--cccCcchhhccCCchHH
Confidence 9999999999999999999997666999999999999999999999988876654431111 12356899999999999
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCH
Q 010538 335 SIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGY 414 (508)
Q Consensus 335 ~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 414 (508)
+.+++.+|++++.++|++.+.++.++|++++.+.|+++ +++++++++. .++.++++|.+++. +.
T Consensus 282 ~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~------~~v~i~g~~~-----~~r~~~vsF~v~~~-----~~ 345 (405)
T COG0520 282 GAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSEL------PGVEIYGPPD-----ADRGGIVSFNVKGI-----HP 345 (405)
T ss_pred HHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC------CCeEEecCCc-----ccCceEEEEEeCCC-----CH
Confidence 99999999999999999999999999999999999999 4799999875 13589999999885 44
Q ss_pred HHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHh
Q 010538 415 REVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCS 494 (508)
Q Consensus 415 ~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~ 494 (508)
.++.+.|.++||.++.|++|+.+. ++.+++ .+.+|+|+++|||.||||+|+++
T Consensus 346 ~dv~~~L~~~gI~vr~g~~ca~p~-~~~~~~--------------------------~~~iR~S~~~YNt~edid~l~~a 398 (405)
T COG0520 346 HDVATLLDEKGIAVRAGHHCAQPL-HRLLGV--------------------------DATIRASLHLYNTEEDVDRLLEA 398 (405)
T ss_pred HHHHHHHHhCCeEEEeccccccHH-HHhcCC--------------------------CCceEEEEeecCCHHHHHHHHHH
Confidence 569999999999999999999886 455554 45699999999999999999999
Q ss_pred hhhhhh
Q 010538 495 SFDFVN 500 (508)
Q Consensus 495 ~~~~~~ 500 (508)
|+++.+
T Consensus 399 L~~~~~ 404 (405)
T COG0520 399 LKKALA 404 (405)
T ss_pred HHHHhh
Confidence 998764
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-57 Score=452.92 Aligned_cols=375 Identities=23% Similarity=0.286 Sum_probs=339.5
Q ss_pred CeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHH
Q 010538 41 TVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVG 120 (508)
Q Consensus 41 ~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~ 120 (508)
+|||||++++++.|.++++++..+ ...|+||.+.+..|+.....++.+|+.+|+++|+++. +|+||+|+||++|+++
T Consensus 2 miYlD~~ATTp~~~~v~~~m~~~~-~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~--eIiFTSG~TEsnNlaI 78 (386)
T COG1104 2 MIYLDNAATTPVDPEVLEAMLPYL-TEVFGNPSSLHSFGREARKAVEEAREQIAKLLGADPE--EIIFTSGATESNNLAI 78 (386)
T ss_pred cccccccccCCCCHHHHHHHHHHH-HhhcCCccchhHhHHHHHHHHHHHHHHHHHHhCCCCC--eEEEecCCcHHHHHHH
Confidence 689999999999999999987744 5669999999999999999999999999999999998 9999999999999999
Q ss_pred hh--cCC---CCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCC
Q 010538 121 EA--FPW---SHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPER 195 (508)
Q Consensus 121 ~~--l~~---~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~ 195 (508)
.+ ... +.+.+|+++..||++++...++++..|.+|.++|++.++.+ |+++++ ++|
T Consensus 79 ~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v---------------~~e~L~--~al--- 138 (386)
T COG1104 79 KGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLV---------------DLEQLE--EAL--- 138 (386)
T ss_pred HhhHHhhhcccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeE---------------cHHHHH--Hhc---
Confidence 88 322 24789999999999999999999889999999999999988 799999 666
Q ss_pred CCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccc
Q 010538 196 DPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYK 275 (508)
Q Consensus 196 ~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K 275 (508)
.++|.+|++.++||.+|++.|+++|.++|++ +|+++++|++|++|..|+|+.++++|++++|+||
T Consensus 139 ---~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~------------~~i~fHvDAvQa~Gkipi~~~~~~vD~ls~SaHK 203 (386)
T COG1104 139 ---RPDTILVSIMHANNETGTIQPIAEIGEICKE------------RGILFHVDAVQAVGKIPIDLEELGVDLLSFSAHK 203 (386)
T ss_pred ---CCCceEEEEEecccCeeecccHHHHHHHHHH------------cCCeEEEehhhhcCceeccccccCcceEEeehhh
Confidence 5789999999999999999999999999998 8999999999999999999999999999999999
Q ss_pred cccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHH
Q 010538 276 IFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAIC 355 (508)
Q Consensus 276 ~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~ 355 (508)
++| |.|+|+||+++.. ++.|.+.||++ ++.+++||.|+++++++..|++...+ .++...
T Consensus 204 ~~G-pkGiGaLyv~~~~--~~~p~i~GGgQ-----------------E~g~RsGTenv~~Ivg~~~A~~~a~~-~~~~~~ 262 (386)
T COG1104 204 FGG-PKGIGALYVRPGV--RLEPLIHGGGQ-----------------ERGLRSGTENVPGIVGFGKAAEIAVE-ELEEEN 262 (386)
T ss_pred ccC-CCceEEEEECCCC--ccCceeccCcC-----------------CCCCCCCCccHHHHHHHHHHHHHHHH-HHHHHH
Confidence 999 9999999997776 38899999987 88899999999999999999998655 488899
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCC
Q 010538 356 RHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCN 435 (508)
Q Consensus 356 ~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~ 435 (508)
.++..++++|.+.|.+.. |.+.+.+.... +.+++++|.+++.+++. +.-.|+.+||.+++|+.|+
T Consensus 263 ~~~~~lr~~l~~~l~~~~-----p~~~~~g~~~~-----rlP~~~~~~f~gv~gE~-----ll~~L~~~gI~vStGSACs 327 (386)
T COG1104 263 ARLRKLRDRLEDGLLEII-----PDVYLNGDDEP-----RLPNILNFSFPGVEGES-----LLLALDLAGIAVSTGSACS 327 (386)
T ss_pred HHHHHHHHHHHHHHHhcC-----CcEEEcCCccc-----CCCCeEEEEeCCCcHHH-----HHHhccccCeEEecccccc
Confidence 999999999999998762 47888877643 56999999999987765 7888999999999999999
Q ss_pred chHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhhhc
Q 010538 436 PGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQFL 505 (508)
Q Consensus 436 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~~~ 505 (508)
++.. .+|++|.|||..+ ....+.||||++.+||++||+++++.+.+.++.++.+
T Consensus 328 S~~~------~pShVL~AmG~~~----------e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~~lr~~ 381 (386)
T COG1104 328 SGSL------EPSHVLRAMGISE----------ELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKRLREL 381 (386)
T ss_pred CCCC------CccHHHHHcCCCh----------HHhCccEEEEcCCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 9863 7999999999853 3467899999999999999999999999999998764
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-50 Score=423.73 Aligned_cols=391 Identities=21% Similarity=0.269 Sum_probs=320.8
Q ss_pred CchHHHHHHhhccCCC-----CCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCC-ccchhhhhhHHHHHHHHHHHHHc
Q 010538 24 KSIDQIRATEFKRLEN-----GTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHS-QSDISLATCDIVRAAREQVLDYF 97 (508)
Q Consensus 24 ~~~~~~r~~~f~~~~~-----~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~ 97 (508)
.+++.+|. +||.+.+ +++|||+++++++++.+++++.+ ++...+.|+++ .+..+....+..+++|+.+|+++
T Consensus 3 ~~~~~~r~-~fp~~~~~~~~~~~iYld~a~~~~~~~~v~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~ 80 (406)
T PRK09295 3 FSVEKVRA-DFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEAE-FYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFI 80 (406)
T ss_pred CChHHHHh-hCccccCcCCCCceEEEeCcccccCCHHHHHHHHH-HHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHc
Confidence 35678998 9999932 48999999999999999988755 55555667754 44456667888999999999999
Q ss_pred CC-CCCCceEEEcCChHHHHHHHHhhc---CCCCCCeEEEecccccch-HHHHHHHHhcCCeEEEEccCCccCccccccc
Q 010538 98 NA-SMKDYKCIFTSGATAALKLVGEAF---PWSHQSSYMYTMENHNSV-LGIREYALSQGAAAFAIDVEEAVDNDGLSES 172 (508)
Q Consensus 98 ~~-~~~~~~i~~t~g~t~al~~~~~~l---~~~~g~~vl~~~~~h~s~-~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~ 172 (508)
|+ +++ +|+||+|+|+++++++.++ .+++|++|+++..+|++. ..|...++..|++++.+|.+.++.+
T Consensus 81 ~~~~~~--~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~------ 152 (406)
T PRK09295 81 NARSAE--ELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNPDGTL------ 152 (406)
T ss_pred CcCCCC--eEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCC------
Confidence 98 566 8999999999999999886 357899999999999865 4566667778999999998766555
Q ss_pred cccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccc
Q 010538 173 LVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAK 252 (508)
Q Consensus 173 ~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~ 252 (508)
|+++++ +++ +++|++|++++++|+||.++|+++|.++|++ +|+++++|++|
T Consensus 153 ---------d~~~l~--~~i------~~~t~lv~l~~~~n~tG~~~~~~~i~~~~~~------------~~~~vivD~a~ 203 (406)
T PRK09295 153 ---------QLETLP--ALF------DERTRLLAITHVSNVLGTENPLAEMIALAHQ------------HGAKVLVDGAQ 203 (406)
T ss_pred ---------CHHHHH--Hhc------CCCcEEEEEecchhcccccCCHHHHHHHHHH------------cCCEEEEEccc
Confidence 578888 554 4678999999999999999999999999998 89999999999
Q ss_pred cCCCCCCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCC
Q 010538 253 GCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTAS 332 (508)
Q Consensus 253 ~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~ 332 (508)
+.|..++|+.++++|++++|+||++| |.|+|+++++++.++.+.|...|++..........+ .....+.+++.||+|
T Consensus 204 ~~g~~~~~~~~~~~D~~~~s~~K~~g-p~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~r~e~GT~~ 280 (406)
T PRK09295 204 AVMHHPVDVQALDCDFYVFSGHKLYG-PTGIGILYVKEALLQEMPPWEGGGSMIATVSLTEGT--TWAKAPWRFEAGTPN 280 (406)
T ss_pred ccCccccCchhcCCCEEEeehhhccC-CCCcEEEEEchHhHhhCCCcccCCceeeeeecCCcc--ccCCchhhcCCCCcc
Confidence 99999999999999999999999888 999999999999988776654433322211111111 112346789999999
Q ss_pred hhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCcc
Q 010538 333 FLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWF 412 (508)
Q Consensus 333 ~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 412 (508)
+.+++++.+|++++.+.|++.+++++.++++++++.|+++ ++++++++.. +.++++|.+++.+
T Consensus 281 ~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~------~~~~~~~~~~-------~~~iv~~~~~~~~---- 343 (406)
T PRK09295 281 TGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQLESV------PDLTLYGPQN-------RLGVIAFNLGKHH---- 343 (406)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC------CCEEEeCCCC-------CceEEEEEECCcC----
Confidence 9999999999999999999999999999999999999988 4799987642 3789999987643
Q ss_pred CHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHH
Q 010538 413 GYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNR 492 (508)
Q Consensus 413 ~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~ 492 (508)
..++.+.|.++||.++.|+.|+.+. +.++|. ++.+|+|+|+|||++|||+++
T Consensus 344 -~~~~~~~L~~~gI~v~~g~~c~~~~------------~~~~~~---------------~~~iRiS~~~ynt~~did~l~ 395 (406)
T PRK09295 344 -AYDVGSFLDNYGIAVRTGHHCAMPL------------MAYYNV---------------PAMCRASLAMYNTHEEVDRLV 395 (406)
T ss_pred -HHHHHHHHHhCCeEEeccccchHHH------------HHHHCC---------------CCEEEEEccCCCCHHHHHHHH
Confidence 3458888999999999999998653 223322 578999999999999999999
Q ss_pred Hhhhhhhhh
Q 010538 493 CSSFDFVNF 501 (508)
Q Consensus 493 ~~~~~~~~~ 501 (508)
++|+++..+
T Consensus 396 ~~l~~i~~~ 404 (406)
T PRK09295 396 AGLQRIHRL 404 (406)
T ss_pred HHHHHHHHH
Confidence 999987654
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-49 Score=415.83 Aligned_cols=392 Identities=22% Similarity=0.281 Sum_probs=323.1
Q ss_pred CCchHHHHHHhhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCC-ccchhhhhhHHHHHHHHHHHHHcCC-C
Q 010538 23 PKSIDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHS-QSDISLATCDIVRAAREQVLDYFNA-S 100 (508)
Q Consensus 23 ~~~~~~~r~~~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~~~-~ 100 (508)
+.+++.+|+ +||.+.++++|||+++++++|+.+++++.+ ++.+.++++++ .+..+..+.+.++++|+.+|+++|+ +
T Consensus 3 ~~~~~~~r~-~fp~l~~~~~yld~a~~~~~~~~v~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~ 80 (401)
T PRK10874 3 VFNPAQFRA-QFPALQDAGVYLDSAATALKPQAVIEATQQ-FYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPD 80 (401)
T ss_pred CCCHHHHHH-hCCCcCCceEEEeCCcccCCCHHHHHHHHH-HHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 346788998 999875579999999999999999988755 55666677764 4445667788999999999999999 6
Q ss_pred CCCceEEEcCChHHHHHHHHhhc---CCCCCCeEEEecccccch-HHHHHHHHhcCCeEEEEccCCccCccccccccccc
Q 010538 101 MKDYKCIFTSGATAALKLVGEAF---PWSHQSSYMYTMENHNSV-LGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTS 176 (508)
Q Consensus 101 ~~~~~i~~t~g~t~al~~~~~~l---~~~~g~~vl~~~~~h~s~-~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~ 176 (508)
++ +|++|+|+|+++++++.++ .+++|++||+++.+|++. ..|...++..|++++.+|.+.++.+
T Consensus 81 ~~--~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~---------- 148 (401)
T PRK10874 81 AK--NIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGADRLP---------- 148 (401)
T ss_pred CC--EEEEECCHHHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCCCCcC----------
Confidence 77 8999999999999999998 357899999999999985 4566667788999999998765544
Q ss_pred cccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC
Q 010538 177 TKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT 256 (508)
Q Consensus 177 ~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~ 256 (508)
|+++++ +++ +++|++|++++++|+||.++|+++|.++|++ +|+++++|++|+.|.
T Consensus 149 -----d~~~l~--~~i------~~~t~lv~i~~~~n~tG~~~~~~~i~~l~~~------------~g~~~ivD~a~~~g~ 203 (401)
T PRK10874 149 -----DVDLLP--ELI------TPRTRILALGQMSNVTGGCPDLARAITLAHQ------------AGMVVMVDGAQGAVH 203 (401)
T ss_pred -----CHHHHH--Hhc------CcCcEEEEEeCCcccccCcCCHHHHHHHHHH------------cCCEEEEECCccccc
Confidence 688888 554 5789999999999999999999999999998 899999999999999
Q ss_pred CCCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHH
Q 010538 257 QPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSI 336 (508)
Q Consensus 257 ~~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~ 336 (508)
.++++..+++|++++|+||++| |.|+|+++++++.++.+.+...++..... .....+. ....+.+++.||+|++.+
T Consensus 204 ~~~~~~~~~~d~~~~s~~K~~g-p~G~G~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~e~Gt~~~~~~ 279 (401)
T PRK10874 204 FPADVQALDIDFYAFSGHKLYG-PTGIGVLYGKSELLEAMSPWQGGGKMLTE-VSFDGFT--PQSAPWRFEAGTPNVAGV 279 (401)
T ss_pred ccCCchhcCCCEEEEecccccC-CCccEEEEEchHHHhcCCCeecCCcceEe-eccCccC--CCCChhhccCCCcCHHHH
Confidence 9999998899999999999888 99999999999998888775433321111 0000111 123467899999999999
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHH
Q 010538 337 ASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYRE 416 (508)
Q Consensus 337 ~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 416 (508)
+++.+|++++.+.|.+.+++++.++++++++.|+++ ++++++.++. .++++|.+++. +..+
T Consensus 280 ~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~~------~g~~~~~~~~--------~~i~~~~~~~~-----~~~~ 340 (401)
T PRK10874 280 IGLSAALEWLADIDINQAESWSRSLATLAEDALAKL------PGFRSFRCQD--------SSLLAFDFAGV-----HHSD 340 (401)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC------CCEEEeCCCC--------CcEEEEEECCc-----CHHH
Confidence 999999999999999999999999999999999987 4788876543 67899988653 3345
Q ss_pred HHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhh
Q 010538 417 VEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 417 l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~ 496 (508)
+.+.|.++||.+++|..|+.+. +.++|. .+++|+|+++|||.+||++++++|+
T Consensus 341 ~~~~L~~~gI~v~~g~~~~~~~------------~~~~g~---------------~~~iRiS~~~~nt~edid~ll~al~ 393 (401)
T PRK10874 341 LVTLLAEYGIALRAGQHCAQPL------------LAALGV---------------TGTLRASFAPYNTQSDVDALVNAVD 393 (401)
T ss_pred HHHHHHHCCcEEeccccchHHH------------HHHhCC---------------CCEEEEEecccCCHHHHHHHHHHHH
Confidence 8889999999999999887543 223322 5789999999999999999999999
Q ss_pred hhhhhhh
Q 010538 497 DFVNFSQ 503 (508)
Q Consensus 497 ~~~~~~~ 503 (508)
++++.+.
T Consensus 394 ~~~~~~~ 400 (401)
T PRK10874 394 RALELLV 400 (401)
T ss_pred HHHHHhc
Confidence 9877653
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-49 Score=414.12 Aligned_cols=389 Identities=22% Similarity=0.319 Sum_probs=318.8
Q ss_pred chHHHHHHhhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCC-ccchhhhhhHHHHHHHHHHHHHcCCC-CC
Q 010538 25 SIDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHS-QSDISLATCDIVRAAREQVLDYFNAS-MK 102 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~~~~-~~ 102 (508)
+++.+|+ +||.+.++++|||+++++++|+.+++++.+ ++....++++. .+..+....+.++++|+.+|+++|++ ++
T Consensus 2 ~~~~~r~-~fp~l~~~~iyld~a~~~~~p~~v~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~ 79 (398)
T TIGR03392 2 NPAQFRQ-QFPALQDGTVYLDSAATALKPQAVIDATQQ-FYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAE 79 (398)
T ss_pred ChhHHHH-hCCccCCCeEEeeCccccCCCHHHHHHHHH-HHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4577998 999884569999999999999999988755 54455667753 34445566788999999999999995 67
Q ss_pred CceEEEcCChHHHHHHHHhhc---CCCCCCeEEEecccccch-HHHHHHHHhcCCeEEEEccCCccCccccccccccccc
Q 010538 103 DYKCIFTSGATAALKLVGEAF---PWSHQSSYMYTMENHNSV-LGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTK 178 (508)
Q Consensus 103 ~~~i~~t~g~t~al~~~~~~l---~~~~g~~vl~~~~~h~s~-~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~ 178 (508)
+|++|+|+|+++++++.++ .+++|++|+++..+|++. ..|...++..|++++.+|.+.++.+
T Consensus 80 --~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~------------ 145 (398)
T TIGR03392 80 --NIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGADLLP------------ 145 (398)
T ss_pred --eEEEeCChHHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCCCCc------------
Confidence 8999999999999999998 357899999999999985 4466667788999999998765544
Q ss_pred cccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCC
Q 010538 179 ISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQP 258 (508)
Q Consensus 179 ~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~ 258 (508)
|+++++ +++ +++|++|++++++|+||.+.|+++|.++|++ +|+++++|++|+.|..+
T Consensus 146 ---~~~~l~--~~i------~~~t~lv~i~~~~n~tG~~~~~~~i~~~~~~------------~~~~~ivD~a~~~~~~~ 202 (398)
T TIGR03392 146 ---DIRQLP--ELL------TPRTRILALGQMSNVTGGCPDLARAITLAHQ------------YGAVVVVDGAQGVVHGP 202 (398)
T ss_pred ---CHHHHH--HHh------ccCceEEEEECccccccccCCHHHHHHHHHH------------cCCEEEEEhhhhcCCCC
Confidence 578888 554 5678999999999999999999999999998 89999999999999999
Q ss_pred CCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHH
Q 010538 259 PDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIAS 338 (508)
Q Consensus 259 ~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~ 338 (508)
+++..+++|++++|+||++| |.|+|+++++++.++.+.+.. +|+..........+ .....+.+++.||+|++++++
T Consensus 203 ~~~~~~~~d~~~~s~~K~~g-p~G~G~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~e~GT~~~~~~~a 278 (398)
T TIGR03392 203 PDVQALDIDFYAFSGHKLYG-PTGIGVLYGKTELLEAMPPWQ-GGGKMLSHVSFDGF--IPQAVPHRFEAGTPNIAGVIG 278 (398)
T ss_pred CChhhcCCCEEEEecccccC-CCceEEEEEcHHHHhhCCCee-cCCceEeecccccc--ccCCChhhccCCCCCHHHHHH
Confidence 99998899999999999888 999999999999988887654 44332111111111 112346789999999999999
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHH
Q 010538 339 IRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVE 418 (508)
Q Consensus 339 l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~ 418 (508)
+.++++++.+.|++++.+++.++++++++.|+++ ++++++.++. .++++|.+++.+ ..++.
T Consensus 279 ~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~l------~g~~~~~~~~--------~~i~~~~~~~~~-----~~~l~ 339 (398)
T TIGR03392 279 LSAALEWLTDIDIAAAEAWSVSLADLAEERLAQL------PGFRSFRCPG--------SSLLAFDFAGVH-----HSDLA 339 (398)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC------CCeEEeCCCC--------CcEEEEEeCCcC-----HHHHH
Confidence 9999999999999999999999999999999987 4788776543 689999886543 34588
Q ss_pred HHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 419 KLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 419 ~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
+.|.++||.++.|+.|+.+. +.++|. +++||+|+|+|||.+||++++++|+++
T Consensus 340 ~~L~~~gI~v~~g~~~~~~~------------~~~~g~---------------~~~iRvS~~~~~t~~ei~~l~~~l~~~ 392 (398)
T TIGR03392 340 ALLAESGIALRAGQHCAQPL------------MAALGV---------------SGTLRASFAPYNTQQDVDALVDAVGAA 392 (398)
T ss_pred HHHHhCCEEEecCccchHHH------------HHHhCC---------------CCEEEEEeeccCCHHHHHHHHHHHHHH
Confidence 89999999999999997543 223322 579999999999999999999999988
Q ss_pred hhhh
Q 010538 499 VNFS 502 (508)
Q Consensus 499 ~~~~ 502 (508)
++.+
T Consensus 393 ~~~~ 396 (398)
T TIGR03392 393 LELL 396 (398)
T ss_pred HHHh
Confidence 7754
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-49 Score=412.48 Aligned_cols=397 Identities=22% Similarity=0.294 Sum_probs=321.3
Q ss_pred HHHHHHhhccCCC-----CCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCC-ccchhhhhhHHHHHHHHHHHHHcCCC
Q 010538 27 DQIRATEFKRLEN-----GTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHS-QSDISLATCDIVRAAREQVLDYFNAS 100 (508)
Q Consensus 27 ~~~r~~~f~~~~~-----~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~~~~ 100 (508)
..+|. +||.+++ +++|||+++++++|+.+++++.+ ++.+.+.++.. .+..+....+.++++|+.+++++|++
T Consensus 15 ~~~r~-~fp~~~~~~~~~~~iyLd~a~~~~~p~~v~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~ 92 (424)
T PLN02855 15 AETRP-DFPILDQTVNGSKLVYLDNAATSQKPAAVLDALQD-YYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINAS 92 (424)
T ss_pred HHHHH-hCchhccccCCCCeEEeeCccccCCCHHHHHHHHH-HHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCC
Confidence 35788 9999842 48999999999999999888755 54555666654 33344455677889999999999996
Q ss_pred -CCCceEEEcCChHHHHHHHHhhc---CCCCCCeEEEecccccchH-HHHHHHHhcCCeEEEEccCCccCcccccccccc
Q 010538 101 -MKDYKCIFTSGATAALKLVGEAF---PWSHQSSYMYTMENHNSVL-GIREYALSQGAAAFAIDVEEAVDNDGLSESLVT 175 (508)
Q Consensus 101 -~~~~~i~~t~g~t~al~~~~~~l---~~~~g~~vl~~~~~h~s~~-~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~ 175 (508)
++ +|+||+|+|+++++++.++ .+++|++|+++..+|++.. .|...++..|++++.++++.++.+
T Consensus 93 ~~~--~v~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~~~--------- 161 (424)
T PLN02855 93 TSR--EIVFTRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPDEVL--------- 161 (424)
T ss_pred CCC--EEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCCCCc---------
Confidence 46 8999999999999999875 3578999999999999765 455566778999999998765545
Q ss_pred ccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCC
Q 010538 176 STKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCV 255 (508)
Q Consensus 176 ~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g 255 (508)
|+++++ +++ +++|++|++++++|+||.++|+++|.++|++ +|+++++|++|+.|
T Consensus 162 ------~~~~l~--~~i------~~~t~lv~i~~~~n~tG~~~~~~~I~~l~~~------------~g~~vivD~a~~~g 215 (424)
T PLN02855 162 ------DVEQLK--ELL------SEKTKLVATHHVSNVLGSILPVEDIVHWAHA------------VGAKVLVDACQSVP 215 (424)
T ss_pred ------CHHHHH--HHh------ccCceEEEEeCccccccccCCHHHHHHHHHH------------cCCEEEEEhhhhcC
Confidence 578888 554 4688999999999999999999999999998 89999999999999
Q ss_pred CCCCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhH
Q 010538 256 TQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLS 335 (508)
Q Consensus 256 ~~~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~ 335 (508)
..++|+.++++|++++|+||++| |.|+|+++++++.++.+.|...||........ ... .....+.+++.||+++..
T Consensus 216 ~~~~~~~~~~~d~~~~s~~K~~g-p~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~--~~~-~~~~~~~r~e~GT~~~~~ 291 (424)
T PLN02855 216 HMPVDVQTLGADFLVASSHKMCG-PTGIGFLWGKSDLLESMPPFLGGGEMISDVFL--DHS-TYAPPPSRFEAGTPAIGE 291 (424)
T ss_pred CcCCCchhcCCCEEEeecccccC-CCccEEEEEchhhhhcCCCEecCCCceeeeec--Ccc-ccCCChhhccCCChHHHH
Confidence 99999999999999999999877 99999999999998888776655543221110 000 112236789999999999
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHH
Q 010538 336 IASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYR 415 (508)
Q Consensus 336 ~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 415 (508)
++++.++++++.+.|++++++++.++++++++.|+++ ++++++++.... +..++++++|.+++.+ ..
T Consensus 292 ~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~------~g~~i~~~~~~~--~~~r~~~v~~~~~~~~-----~~ 358 (424)
T PLN02855 292 AIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSSV------PGVRIYGPKPSE--GVGRAALCAFNVEGIH-----PT 358 (424)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC------CCEEEeCCCccc--ccCcccEEEEEECCcC-----HH
Confidence 9999999999999999999999999999999999987 479999864310 0234789999987643 34
Q ss_pred HHHHHHhhC-CCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHh
Q 010538 416 EVEKLASLS-GIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCS 494 (508)
Q Consensus 416 ~l~~~L~~~-gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~ 494 (508)
++.+.|.++ ||.++.|++|+.+. ++.+|+ ++++|+|+|+|||++||+++++.
T Consensus 359 ~v~~~L~~~~gI~v~~g~~c~~~~-~~~~g~--------------------------~~~iRiS~~~ynt~~di~~l~~~ 411 (424)
T PLN02855 359 DLSTFLDQQHGVAIRSGHHCAQPL-HRYLGV--------------------------NASARASLYFYNTKEEVDAFIHA 411 (424)
T ss_pred HHHHHhcccCCEEEechhhhhHHH-HHHhCC--------------------------CCeEEEEeccCCCHHHHHHHHHH
Confidence 588888777 99999999998653 233332 47899999999999999999999
Q ss_pred hhhhhhhhhhcc
Q 010538 495 SFDFVNFSQFLN 506 (508)
Q Consensus 495 ~~~~~~~~~~~~ 506 (508)
|+++++.++.+.
T Consensus 412 l~~~~~~~~~~~ 423 (424)
T PLN02855 412 LKDTIAFFSSFK 423 (424)
T ss_pred HHHHHHHHHhhc
Confidence 999988776553
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=389.92 Aligned_cols=377 Identities=23% Similarity=0.261 Sum_probs=317.7
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKL 118 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~ 118 (508)
.+.+|||+++++++++.|+.++.. ++.+.++||++. ..+|+....++++|+.+|+++|+++. +|+||+|+|+++|+
T Consensus 42 ~~~vyld~~at~p~~~~Vldam~~-~~~~~~~nPh~~-~y~w~~~~~~E~aR~~VAklInAd~~--dIiFts~ATEs~Nl 117 (428)
T KOG1549|consen 42 TRPVYLDNQATGPMDPRVLDAMLP-YLLEYLGNPHSR-SYGWKAEDAVEAAREQVAKLINADPS--DIVFTSGATESNNL 117 (428)
T ss_pred CccEEEecCcCCCCCHHHHHHHHH-HHHHhhcCCCcc-ccchhhhHHHHHHHHHHHHHhCCCCC--cEEEeCCchHHHHH
Confidence 589999999999999999999755 667889999987 55777788899999999999999999 89999999999999
Q ss_pred HHhhcCCCCCC----eEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCC
Q 010538 119 VGEAFPWSHQS----SYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 119 ~~~~l~~~~g~----~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
++.++.+..++ +||+...+|+++..+++.++..|++|+.+|++..+.. |.++++ ++|
T Consensus 118 vl~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~~~~~~---------------d~~~~~--~~i-- 178 (428)
T KOG1549|consen 118 VLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVEDSGLV---------------DISKLR--EAI-- 178 (428)
T ss_pred HHHHhhccccccccceEEEecccCcchhHHHHHHHhcCeEEEEeccCccccc---------------cHHHHH--Hhc--
Confidence 99999887777 9999999999999999999999999999999865555 688888 555
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEecc
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFY 274 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~ 274 (508)
+++|++|.+.+++|.+|.++|+++|.++|++ .|+.+++|+||+.|++++|+.++++||+++|+|
T Consensus 179 ----~~~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~------------~~v~v~~DaAQavG~i~vDV~eln~D~~s~s~H 242 (428)
T KOG1549|consen 179 ----RSKTRLVSIMHVNNEIGVLQPVKEIVKICRE------------EGVQVHVDAAQAVGKIPVDVQELNADFLSISAH 242 (428)
T ss_pred ----CCCceEEEEEecccCccccccHHHHHHHhCc------------CCcEEEeehhhhcCCccccHHHcCchheeeecc
Confidence 6899999999999999999999999999998 899999999999999999999999999999999
Q ss_pred ccccCCCcceEEEEech-hHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHH
Q 010538 275 KIFGYPTGLGALIMRND-AAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPA 353 (508)
Q Consensus 275 K~~g~P~G~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~ 353 (508)
|||| |+|+|+||++++ -.-.+.|.+.||++ .+.+++||.+++...++.+|+++..+. +..
T Consensus 243 K~yg-p~~iGaLYvr~~~~~~~~~p~~~GGgq-----------------~r~~rsGT~~~~~~~~~gsA~e~~~~~-~~~ 303 (428)
T KOG1549|consen 243 KIYG-PPGIGALYVRRKRPRLRVEPPLSGGGQ-----------------ERGLRSGTVATPLAVGLGSAAEFVNKE-MAY 303 (428)
T ss_pred cccC-CCcceEEEEccCCCcccccCcccCCcc-----------------ccccccCCcCchhhhhhHHHHHHHHhh-cch
Confidence 9999 888999999972 22234577788876 788999999999999999999988764 566
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCC
Q 010538 354 ICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCF 433 (508)
Q Consensus 354 i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~ 433 (508)
...++.++...+..++.... +.+.+.+++.. +..+.++|.++...+.- + .+...-+.++.|..
T Consensus 304 ~~~~~~~~~~~ll~~i~~~~-----~~~~~~G~~~~-----~~~~~~~~~~~~~~g~~-----~--~~~~~~~~l~s~~a 366 (428)
T KOG1549|consen 304 DEAIIKRLSEKLLMGIGQSL-----PEVTLNGSGKS-----RYPGLVSLSFPYVEGES-----L--LMDLKDVALSSGSA 366 (428)
T ss_pred hHHHHHHHHHHHHHHHhhhC-----chhhccCCccc-----ccccceeeecccccCcc-----h--hhhhhhhhhcccch
Confidence 66667778888888875422 35777776653 34788888887444332 2 33445688888888
Q ss_pred CCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhhhcc
Q 010538 434 CNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQFLN 506 (508)
Q Consensus 434 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~~~~ 506 (508)
|.... ++||.+|-+.|.. ....+..||||++.|||.+|++++++.+++.+..+..++
T Consensus 367 ~~~~~------~epsy~l~~~G~~----------~~~~~~~iRis~G~y~t~~di~~~~~~i~~~v~~~~~~s 423 (428)
T KOG1549|consen 367 CTSAS------LEPSYVLRAIGVD----------EDLAHSSIRISIGRYTTEEDIDYLVDAIKKLVSLLREMS 423 (428)
T ss_pred hhcCC------CCcchhhhhcCcc----------hhhhcceeEEeeeeeCcHHHHHHHHHHHHHHHHhccccC
Confidence 87643 3688888888761 124578999999999999999999999999988766543
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-48 Score=399.77 Aligned_cols=360 Identities=21% Similarity=0.242 Sum_probs=302.0
Q ss_pred eeeeCCCCCCCCHHHHHHHHHHhhccccCCCCC-ccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHH
Q 010538 42 VYLDHAGATLYSELQMEAIFRDFTTNVYGNPHS-QSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVG 120 (508)
Q Consensus 42 iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~ 120 (508)
+|||+++++++++.+++++.+ ++...+++|++ .+..+....+.++++|+.+++++|++++ +|+||+|+|+++++++
T Consensus 1 iYld~a~~~~~~~~v~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~--~v~~t~~~t~a~~~~l 77 (364)
T PLN02651 1 LYLDMQATTPIDPRVLDAMLP-FLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPK--EIIFTSGATESNNLAI 77 (364)
T ss_pred CcccCcCCCCCCHHHHHHHHH-HHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCC--eEEEeCCHHHHHHHHH
Confidence 699999999999999998765 44455678876 4444566778899999999999999988 8999999999998887
Q ss_pred hhcC---CCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCC
Q 010538 121 EAFP---WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP 197 (508)
Q Consensus 121 ~~l~---~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~ 197 (508)
.++. .++|++|+++..+|+++...+..++..|++++.+|.++++.+ |+++++ +++
T Consensus 78 ~~~~~~~~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~---------------d~~~l~--~~i----- 135 (364)
T PLN02651 78 KGVMHFYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKSDGLV---------------DLDELA--AAI----- 135 (364)
T ss_pred HHHHHhccCCCCEEEEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcC---------------CHHHHH--Hhc-----
Confidence 6641 367899999999999987666666678999999998766655 688888 555
Q ss_pred CCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccc
Q 010538 198 AGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIF 277 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~ 277 (508)
+++|++|++++++|+||.++|+++|.++||+ +|+++++|++|++|..|+|+.++++|++++|+|||+
T Consensus 136 -~~~t~lv~v~~~~n~tG~~~~l~~I~~~~~~------------~g~~~~vD~a~~~g~~~~~~~~~~~D~~~~s~hK~~ 202 (364)
T PLN02651 136 -RPDTALVSVMAVNNEIGVIQPVEEIGELCRE------------KKVLFHTDAAQAVGKIPVDVDDLGVDLMSISGHKIY 202 (364)
T ss_pred -CCCcEEEEEECCCCCceecccHHHHHHHHHH------------cCCEEEEEcchhhCCcccCcccCCCCEEEechhhhC
Confidence 4678999999999999999999999999998 899999999999999999999999999999999986
Q ss_pred cCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHH
Q 010538 278 GYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRH 357 (508)
Q Consensus 278 g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~ 357 (508)
| |.|+|+++++++....+.|.+.||++ ..+++.||+|+++++++.++++++.+ +.++++++
T Consensus 203 g-p~G~g~l~v~~~~~~~l~p~~~g~~~-----------------~~~~~~GT~~~~~~~~l~~al~~~~~-~~~~i~~~ 263 (364)
T PLN02651 203 G-PKGVGALYVRRRPRVRLEPLMSGGGQ-----------------ERGRRSGTENTPLVVGLGAACELAMK-EMDYDEKH 263 (364)
T ss_pred C-CCceEEEEEcCCCCCCCCccccCCCc-----------------cCCccCCCccHHHHHHHHHHHHHHHH-hHHHHHHH
Confidence 6 99999999999988888888777643 45678999999999999999999987 46999999
Q ss_pred HHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCch
Q 010538 358 IASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPG 437 (508)
Q Consensus 358 ~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~ 437 (508)
+.++++++++.|++.. +++++++|.... .++.++++|.+++.++ .++.+.|.+ |.++.|++|+++
T Consensus 264 ~~~l~~~l~~~l~~~~-----~~~~i~~~~~~~---~~~~~i~~~~~~~~~~-----~~~~~~L~~--i~v~~g~~c~~~ 328 (364)
T PLN02651 264 MKALRERLLNGLRAKL-----GGVRVNGPRDPE---KRYPGTLNLSFAYVEG-----ESLLMGLKE--VAVSSGSACTSA 328 (364)
T ss_pred HHHHHHHHHHHHHhhC-----CCEEEECCCCcc---cCcCCEEEEEeCCCCH-----HHHHHHhCC--EEEEchhhcCCC
Confidence 9999999999998631 479999874321 2347899999976543 458888865 999999999987
Q ss_pred HHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHH
Q 010538 438 ACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAK 489 (508)
Q Consensus 438 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~ 489 (508)
.. .+|+++++||..+ ....+.+|+|+++|||++|||
T Consensus 329 ~~------~~~~~~~~~g~~~----------~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 329 SL------EPSYVLRALGVPE----------EMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred CC------CcCHHHHHcCCCh----------HHhCceEEEEcCCCCCHHHcC
Confidence 42 4789999998631 123589999999999999985
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=394.04 Aligned_cols=390 Identities=22% Similarity=0.300 Sum_probs=318.1
Q ss_pred HHHHHhhccCCC-----CCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCc-cchhhhhhHHHHHHHHHHHHHcCCC-
Q 010538 28 QIRATEFKRLEN-----GTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQ-SDISLATCDIVRAAREQVLDYFNAS- 100 (508)
Q Consensus 28 ~~r~~~f~~~~~-----~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~r~~la~~~~~~- 100 (508)
.+|+ +||.+++ +++|||+++++++|+.+++++.+ ++.+.+++|+.. +..+......++++|+.+++++|++
T Consensus 2 ~~~~-~f~~~~~~~~~~~~~yld~~~~~~~p~~v~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~ 79 (403)
T TIGR01979 2 NIRA-DFPILKRKINGKPLVYLDSAATSQKPQQVIDAVAE-YYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAAS 79 (403)
T ss_pred chhh-hCchhcCCCCCCceEEEeCccccCCCHHHHHHHHH-HHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCC
Confidence 4788 9999832 46999999999999999888654 655666777643 3344556678899999999999998
Q ss_pred CCCceEEEcCChHHHHHHHHhhcC---CCCCCeEEEecccccchH-HHHHHHHhcCCeEEEEccCCccCccccccccccc
Q 010538 101 MKDYKCIFTSGATAALKLVGEAFP---WSHQSSYMYTMENHNSVL-GIREYALSQGAAAFAIDVEEAVDNDGLSESLVTS 176 (508)
Q Consensus 101 ~~~~~i~~t~g~t~al~~~~~~l~---~~~g~~vl~~~~~h~s~~-~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~ 176 (508)
++ +|++|+|+|+++++++.++. +++|++|+++..+|++.. .|...++..|++++.++.+.++.+
T Consensus 80 ~~--~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~---------- 147 (403)
T TIGR01979 80 DE--EIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDDDGTL---------- 147 (403)
T ss_pred CC--eEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecCCCCCC----------
Confidence 66 89999999999999988762 577999999999999865 455566678999999998866655
Q ss_pred cccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC
Q 010538 177 TKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT 256 (508)
Q Consensus 177 ~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~ 256 (508)
++++++ +++ +++|++|++++++|+||.++|+++|.++|++ +|+++++|++|+.|.
T Consensus 148 -----~~~~l~--~~i------~~~~~lv~~~~~~~~tG~~~~~~~i~~~~~~------------~~~~~ivD~a~~~g~ 202 (403)
T TIGR01979 148 -----DLDDLE--KLL------TEKTKLVAITHVSNVLGTVNPVEEIAKLAHQ------------VGAKVLVDGAQAVPH 202 (403)
T ss_pred -----CHHHHH--HHh------ccCCeEEEEEcccccccccCCHHHHHHHHHH------------cCCEEEEEchhhcCc
Confidence 578888 554 5678999999999999999999999999998 899999999999999
Q ss_pred CCCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHH
Q 010538 257 QPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSI 336 (508)
Q Consensus 257 ~~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~ 336 (508)
.++++.++++|++++|+||++| |.|+|+++++++.++.+.|...||.......... ......+.+++.||+++..+
T Consensus 203 ~~~~~~~~~~d~~~~s~~K~~g-p~G~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~gt~~~~~~ 278 (403)
T TIGR01979 203 MPVDVQALDCDFYVFSGHKMYG-PTGIGVLYGKEELLEQMPPFLGGGEMIAEVSFEE---TTYNEAPHKFEAGTPNIAGV 278 (403)
T ss_pred cccCccccCCCEEEEecccccC-CCCceEEEEchHHHhcCCCeecCCCceeecccCc---cccCCChhhcCCCCccHHHH
Confidence 9999998899999999999988 9999999999998888877766654432111100 01112356788999999999
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHH
Q 010538 337 ASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYRE 416 (508)
Q Consensus 337 ~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 416 (508)
+++.++++++.+.|++.+.+++.++++++++.|+++ ++++++.+... .+++++++|.+++.+ ..+
T Consensus 279 ~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~------~g~~~~~~~~~----~~~~~~v~~~~~~~~-----~~~ 343 (403)
T TIGR01979 279 IGLGAAIDYLEAIGLENIEAHEHELTAYALERLGEI------PGLRIYGPRDA----EDRGGIISFNVEGVH-----PHD 343 (403)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC------CCEEEeCCCCc----cccCceEEEEeCCcC-----HHH
Confidence 999999999988899999999999999999999987 47999876532 245789999987543 345
Q ss_pred HHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhh
Q 010538 417 VEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 417 l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~ 496 (508)
+.+.|+++||.++.|++|+.+.. .++|. ++++|||+++|||.+||++++++|+
T Consensus 344 ~~~~L~~~gI~v~~g~~~~~~~~------------~~~~~---------------~~~iRiS~~~~~t~~di~~l~~~l~ 396 (403)
T TIGR01979 344 VGTILDEEGIAVRSGHHCAQPLM------------RRFGV---------------PATCRASFYIYNTEEDIDALVEALK 396 (403)
T ss_pred HHHHHhhCCEEEcchhhhhHHHH------------HHhCC---------------CCEEEEEeccCCCHHHHHHHHHHHH
Confidence 88899999999999998876431 22221 5789999999999999999999999
Q ss_pred hhhhhh
Q 010538 497 DFVNFS 502 (508)
Q Consensus 497 ~~~~~~ 502 (508)
++++++
T Consensus 397 ~~~~~~ 402 (403)
T TIGR01979 397 KVRKFF 402 (403)
T ss_pred HHHHHh
Confidence 888764
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-47 Score=393.75 Aligned_cols=370 Identities=23% Similarity=0.272 Sum_probs=309.8
Q ss_pred eeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHh
Q 010538 42 VYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGE 121 (508)
Q Consensus 42 iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~ 121 (508)
+|||+++++++++.+++++.+ ++.+.+++|+..+..+..+.+.++++|+.+++++|++++ +|+||+|+|+++++++.
T Consensus 1 ~yld~aa~~~~~~~v~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~--~i~~t~~~t~a~~~al~ 77 (379)
T TIGR03402 1 IYLDNNATTRVDPEVLEAMLP-YFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPD--EIIFTSGGTESDNTAIK 77 (379)
T ss_pred CcCCCcCCCCCCHHHHHHHHH-HHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCC--eEEEeCcHHHHHHHHHH
Confidence 699999999999999988766 444567888865555566778899999999999999988 89999999999999888
Q ss_pred hcC--CCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCC
Q 010538 122 AFP--WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAG 199 (508)
Q Consensus 122 ~l~--~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~ 199 (508)
++. .+++++|+++..+||++......++..|++++.+|.+.++.+ |+++++ +++ +
T Consensus 78 ~~~~~~~~~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~g~~---------------~~~~l~--~~i------~ 134 (379)
T TIGR03402 78 SALAAQPEKRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDEEGRL---------------DLEELR--AAI------T 134 (379)
T ss_pred HHHHhcCCCCeEEEcccccHHHHHHHHHHHHcCCEEEEEccCCCCcC---------------CHHHHH--Hhc------C
Confidence 762 356789999999999988777777778999999998766655 688888 555 4
Q ss_pred CCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccC
Q 010538 200 DAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGY 279 (508)
Q Consensus 200 ~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~ 279 (508)
++|++|++++++|+||.++|+++|.++|++ +|+++++|++|++|..|+|+.++++|++++|+||++|
T Consensus 135 ~~~~lv~i~~~~n~tG~~~~~~~I~~l~~~------------~g~~vivD~~~~~g~~~~~~~~~~~D~~~~s~~K~~g- 201 (379)
T TIGR03402 135 DDTALVSVMWANNETGTIFPIEEIGEIAKE------------RGALFHTDAVQAVGKIPIDLKEMNIDMLSLSGHKLHG- 201 (379)
T ss_pred CCcEEEEEEcccCCeeecccHHHHHHHHHH------------cCCEEEEECcccccccccCcccCCCCEEEEcHHHcCC-
Confidence 678999999999999999999999999998 9999999999999999999999999999999999776
Q ss_pred CCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHH
Q 010538 280 PTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIA 359 (508)
Q Consensus 280 P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~ 359 (508)
|.|+|+++++++. .+.|.+.|+.. ..+++.||+|+++++++.++++++.+ .++.+.+++.
T Consensus 202 p~G~g~l~v~~~~--~~~p~~~g~~~-----------------~~~~~~gt~~~~~~~~l~~al~~~~~-~~~~~~~~~~ 261 (379)
T TIGR03402 202 PKGVGALYIRKGT--RFRPLLRGGHQ-----------------ERGRRAGTENVPGIVGLGKAAELATE-HLEEENTRVR 261 (379)
T ss_pred CCceEEEEECCCC--CCCCcccCCcc-----------------CCCcCCCCccHHHHHHHHHHHHHHHH-hHHHHHHHHH
Confidence 9999999999875 35666555432 34456899999999999999999876 5899999999
Q ss_pred HHHHHHHHHHhc-ccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchH
Q 010538 360 SLGMYVRKVLLS-LRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGA 438 (508)
Q Consensus 360 ~l~~~l~~~L~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~ 438 (508)
++++++++.|++ + +++++.++... +.+++++|.+++.++ .++.+.|.++||.++.|++|+.+.
T Consensus 262 ~l~~~l~~~l~~~~------~~~~~~~~~~~-----~~~~~~~~~~~~~~~-----~~~~~~l~~~gI~v~~g~~c~~~~ 325 (379)
T TIGR03402 262 ALRDRLEAGLLARI------PDARLNGDPTK-----RLPNTVNISFEYIEG-----EAILLLLDMEGICASSGSACTSGS 325 (379)
T ss_pred HHHHHHHHHHHhhC------CCEEEeCCCcc-----CCCCEEEEEecCCCH-----HHHHHhhccCCEEEEchhhcCCCC
Confidence 999999999985 6 47888876432 235688888876433 458889999999999999999875
Q ss_pred HHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 439 CAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 439 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
. .+|+++.+||..+ ....+.||+|+|+|||.+||+++++.|+++++.+
T Consensus 326 ~------~~~~~~~~lg~~~----------~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~~ 373 (379)
T TIGR03402 326 L------EPSHVLRAMGVPH----------TAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIARL 373 (379)
T ss_pred C------CcCHHHHHcCCCh----------hhcCceEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3 5678888888631 1235789999999999999999999999987654
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-47 Score=391.87 Aligned_cols=366 Identities=27% Similarity=0.353 Sum_probs=299.9
Q ss_pred eeeeCCCCCCCCHHHHHHHHHHhhccccCCCCC-ccchhhhhhHHHHHHHHHHHHHcCCCC-CCceEEEcCChHHHHHHH
Q 010538 42 VYLDHAGATLYSELQMEAIFRDFTTNVYGNPHS-QSDISLATCDIVRAAREQVLDYFNASM-KDYKCIFTSGATAALKLV 119 (508)
Q Consensus 42 iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~~~~~-~~~~i~~t~g~t~al~~~ 119 (508)
||||+++++++|+.+++++.+ ++.+.+.||++ .+..+....+.++++|+.+++++|+++ + +|+|++|+|.+++.+
T Consensus 1 iYld~~~~~~~p~~v~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~--~v~~~~~~t~a~~~~ 77 (371)
T PF00266_consen 1 IYLDNAGTGPMPKSVLEAISD-YLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDE--EVVFTSNGTEALNAV 77 (371)
T ss_dssp EEEBTSSS-B-BHHHHHHHHH-HHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTE--EEEEESSHHHHHHHH
T ss_pred CEeeCCCccCCCHHHHHHHHH-HHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCcccc--ccccccccchhhhhh
Confidence 799999999999999999865 54566778854 344566678899999999999999998 5 899999999999999
Q ss_pred Hhhc--CCCCCCeEEEecccccchHHH-HHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCC
Q 010538 120 GEAF--PWSHQSSYMYTMENHNSVLGI-REYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERD 196 (508)
Q Consensus 120 ~~~l--~~~~g~~vl~~~~~h~s~~~~-~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~ 196 (508)
+.++ .+++|++|+++..+|++.... ....++.|++++.++.+.++.+ |+++++ ++|
T Consensus 78 ~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~---------------~~~~~~--~~l---- 136 (371)
T PF00266_consen 78 ASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGGSL---------------DLEDLE--EAL---- 136 (371)
T ss_dssp HHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTSSC---------------SHHHHH--HHH----
T ss_pred hhccccccccccccccccccccccccccccccccchhhhccccccccchh---------------hhhhhh--hhh----
Confidence 9998 468899999999999998754 4455688999999998776666 578887 444
Q ss_pred CCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEecccc
Q 010538 197 PAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKI 276 (508)
Q Consensus 197 ~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~ 276 (508)
+++|++|++++++|.||.++|+++|.++||+ +|+++++|++|++|..++|+.++++||+++|+||
T Consensus 137 --~~~~~lv~~~~~~~~tG~~~pi~~I~~~~~~------------~~~~~~vD~~~~~g~~~id~~~~~~D~~~~s~~K- 201 (371)
T PF00266_consen 137 --NPDTRLVSISHVENSTGVRNPIEEIAKLAHE------------YGALLVVDAAQSAGCVPIDLDELGADFLVFSSHK- 201 (371)
T ss_dssp --HTTESEEEEESBETTTTBBSSHHHHHHHHHH------------TTSEEEEE-TTTTTTSS--TTTTTESEEEEESTS-
T ss_pred --ccccceEEeecccccccEEeeeceehhhhhc------------cCCceeEechhccccccccccccccceeeecccc-
Confidence 5899999999999999999999999999998 8999999999999999999999999999999999
Q ss_pred ccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHH
Q 010538 277 FGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICR 356 (508)
Q Consensus 277 ~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~ 356 (508)
+++|.|+|+++++++.+++++|...+|........ ..+ .......+++.||+++..++++..+++++.+.|++++.+
T Consensus 202 l~gp~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~-~~~--~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~ 278 (371)
T PF00266_consen 202 LGGPPGLGFLYVRPEAIERLRPAKPGGGYLDFPSL-QEY--GLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRE 278 (371)
T ss_dssp TTSSSTEEEEEEEHHHHHHHHTSSSSSSTTTHHHH-HHH--CHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCchhhheehhhhhhccccccccccccccccc-hhc--ccccccccccccceeeehhhhHHHHHhhhhccccccchh
Confidence 55599999999999999999888877753211100 001 122456788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCc
Q 010538 357 HIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNP 436 (508)
Q Consensus 357 ~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~ 436 (508)
|..++++++++.|.++ ++++++++... .+++++++|.+++. +..++.+.|.++||.++.|+.|+.
T Consensus 279 ~~~~l~~~~~~~l~~~------~~~~~~~~~~~----~~~~~i~~~~~~~~-----~~~~~~~~L~~~~I~~~~G~~~~~ 343 (371)
T PF00266_consen 279 RIRELAEYLREALEEL------PGIEVLGPDDE----PRRPSIVSFNLPGS-----DADDVVKYLEERGIAVSTGSACAG 343 (371)
T ss_dssp HHHHHHHHHHHHHHHT------TTEEESSSSCG----GBGTTEEEEEETTS-----SHHHHHHHHHHHTEEEEESTTTCH
T ss_pred hhhhHHHHHHhhhhcC------CceeEeeeccc----ccccceEEEeecCC-----CHHHHHHHHhhcCEEEeccCcccH
Confidence 9999999999999998 47899885433 46799999999764 345699999999999999999984
Q ss_pred hHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHH
Q 010538 437 GACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVN 491 (508)
Q Consensus 437 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l 491 (508)
+.. ..++ ..+.||+|+|+|||.+|||+|
T Consensus 344 ~~~------------~~~~---------------~~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 344 PSL------------DILG---------------MGGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp HHH------------HHHH---------------TTTEEEEE-GTTSSHHHHHHH
T ss_pred HHH------------HHhC---------------CCCEEEEeccCCCCHHHHhhC
Confidence 431 1111 158999999999999999986
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-46 Score=385.88 Aligned_cols=372 Identities=22% Similarity=0.246 Sum_probs=308.3
Q ss_pred eeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCC-CCCCceEEEcCChHHHHHHHH
Q 010538 42 VYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA-SMKDYKCIFTSGATAALKLVG 120 (508)
Q Consensus 42 iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~-~~~~~~i~~t~g~t~al~~~~ 120 (508)
+||||++++++++.+++++.+ ++.+.+.||++.+..+......++++++.+++.+++ +++ +|++|+|+|+++++++
T Consensus 1 ~yld~aa~~~~~~~v~~~~~~-~~~~~~~n~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~--~i~~t~g~teal~~~~ 77 (382)
T TIGR03403 1 VYLDNNATTMLDPKVKELMDP-FFCDIYGNPNSLHQFGTATHPAIAEALDKLYKGINARDLD--DIIITSCATESNNWVL 77 (382)
T ss_pred CcccCcCCCCCCHHHHHHHHH-HHHhcCcCCccccHHHHHHHHHHHHHHHHHHHHcCcCCCC--eEEEeCCHHHHHHHHH
Confidence 699999999999999888754 555677899876555556677788888999999998 577 8999999999999999
Q ss_pred hhcCC----CC-CCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCC
Q 010538 121 EAFPW----SH-QSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPER 195 (508)
Q Consensus 121 ~~l~~----~~-g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~ 195 (508)
.++.+ ++ +++|+++..+||++......++..|++++.+|.+.++.+ |+++++ +++
T Consensus 78 ~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~~g~~---------------d~~~l~--~~i--- 137 (382)
T TIGR03403 78 KGVYFDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPINEQGTI---------------TAEQVR--EAI--- 137 (382)
T ss_pred HHHHHhhcccCCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecCCCCCC---------------CHHHHH--Hhc---
Confidence 88632 34 578999999999998887777788999999998866655 578888 554
Q ss_pred CCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccc
Q 010538 196 DPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYK 275 (508)
Q Consensus 196 ~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K 275 (508)
+++|++|++++++|+||.++|+++|.++|++ +|+++++|++|+.|..++++.++++|++++|+||
T Consensus 138 ---~~~t~lv~~~~~~n~tG~~~~~~~I~~la~~------------~g~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K 202 (382)
T TIGR03403 138 ---TEKTALVSVMWANNETGMIFPIKEIGEICKE------------RGVLFHTDAVQAIGKIPVDVQKAGVDFLSFSAHK 202 (382)
T ss_pred ---ccCCeEEEEEcccCCCccccCHHHHHHHHHH------------cCCEEEEechhhcCCCccCccccCCCEEEEcchh
Confidence 4578999999999999999999999999998 8999999999999999999999999999999999
Q ss_pred cccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHH
Q 010538 276 IFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAIC 355 (508)
Q Consensus 276 ~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~ 355 (508)
|+| |.|+|+++++++. .+.|.+.|+.+ ...++.||+|+++++++..+++++.+ +++.+.
T Consensus 203 ~~g-p~G~g~l~vr~~~--~~~p~~~g~~~-----------------~~~~~~gt~~~~~~~al~~al~~~~~-~~~~~~ 261 (382)
T TIGR03403 203 FHG-PKGVGGLYIRKGV--ELTPLFHGGEH-----------------MGGRRSGTLNVPYIVAMGEAMRLANE-YLDFEK 261 (382)
T ss_pred hCC-CCceEEEEECCCC--CCCCcccCCCC-----------------CCCcccCCcChHHHHHHHHHHHHHHH-hHHHHH
Confidence 988 9999999999875 35665444432 23456799999999999999998766 488999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCC
Q 010538 356 RHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCN 435 (508)
Q Consensus 356 ~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~ 435 (508)
++++.+++++.+.|+++ ++++++++... +.+++++|.+++.++ ..+.+.|.++||.++.|+.|+
T Consensus 262 ~~~~~l~~~l~~~L~~~------~~~~~~~~~~~-----~~~~~~~~~~~~~~~-----~~~~~~L~~~gI~v~~g~~c~ 325 (382)
T TIGR03403 262 SHVRRLRDRLEDALLEL------PDVFVVGDREH-----RVPNTILISIKGVEG-----EAMLWDLNKAGIAASTGSACA 325 (382)
T ss_pred HHHHHHHHHHHHHHhcC------CCEEEECCCCC-----CcCCEEEEEeCCCCH-----HHHHHhhccCCEEEEchhccC
Confidence 99999999999999987 47999887542 336788999876433 347778999999999999998
Q ss_pred chHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhhh
Q 010538 436 PGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQF 504 (508)
Q Consensus 436 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~~ 504 (508)
... .++++++.+||... ....+.||+|+++|||.+|||+++++|+++++.++.
T Consensus 326 ~~~------~~~~~v~~~~g~~~----------~~~~~~iR~s~~~~~t~~did~~~~~l~~~~~~~~~ 378 (382)
T TIGR03403 326 SED------LEANPVMVAIGADK----------ELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQRLRA 378 (382)
T ss_pred CCC------CCcCHHHHHcCCCh----------HHhCeeEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 753 36688888887521 113578999999999999999999999998876543
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-45 Score=379.99 Aligned_cols=374 Identities=20% Similarity=0.254 Sum_probs=304.7
Q ss_pred CCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCC-ccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHH
Q 010538 40 GTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHS-QSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKL 118 (508)
Q Consensus 40 ~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~ 118 (508)
..+|||+++++++++.+++++.+ ++...+++|++ .+..++...+.++++|+.+++++|++++ +|+||+|+|+++++
T Consensus 3 ~~~yld~aa~~~~~~~v~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~--~v~~~~g~t~a~~~ 79 (402)
T TIGR02006 3 LPIYLDYAATTPVDPRVAEKMMP-YLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSR--EIVFTSGATESNNL 79 (402)
T ss_pred ccEEeeCCcCCCCCHHHHHHHHH-HHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCC--eEEEeCCHHHHHHH
Confidence 46999999999999999988755 44445677774 3334445567889999999999999988 89999999999999
Q ss_pred HHhhcC---CCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCC
Q 010538 119 VGEAFP---WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPER 195 (508)
Q Consensus 119 ~~~~l~---~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~ 195 (508)
++.++. .++|++|+++..+|+++......++..|++++.+|.+.++.+ |+++++ +++
T Consensus 80 ~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~---------------d~~~l~--~~l--- 139 (402)
T TIGR02006 80 AIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKSNGLI---------------DLEELK--AAI--- 139 (402)
T ss_pred HHHHHHHhhcCCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccCCCCcC---------------CHHHHH--Hhc---
Confidence 887763 367899999999999988776666778999999998766655 688888 555
Q ss_pred CCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccc
Q 010538 196 DPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYK 275 (508)
Q Consensus 196 ~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K 275 (508)
.+++++|++++++|+||.+.|+++|.++|++ +|+++++|++|++|..|+++.++++|++++|+||
T Consensus 140 ---~~~~~lv~v~~~~n~tG~~~~~~~I~~l~~~------------~g~~livD~a~a~g~~~~~~~~~~~D~~~~s~~K 204 (402)
T TIGR02006 140 ---RDDTILVSIMHVNNEIGVIQDIAAIGEICRE------------RKVFFHVDAAQSVGKIPINVNELKVDLMSISGHK 204 (402)
T ss_pred ---CCCCEEEEEECCCcCceecccHHHHHHHHHH------------cCCEEEEEcchhcCCcccCccccCCCEEEEehhh
Confidence 4568999999999999999999999999998 8999999999999999999999999999999999
Q ss_pred cccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHH
Q 010538 276 IFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAIC 355 (508)
Q Consensus 276 ~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~ 355 (508)
++| |.|+|+++++++....+.|...++++ .++++.||+++..++++..+++++.+ +++.+.
T Consensus 205 ~~g-p~G~G~l~~~~~~~~~~~~~~~g~~~-----------------~~~~~~gt~~~~~~~al~~al~~~~~-~~~~~~ 265 (402)
T TIGR02006 205 IYG-PKGIGALYVRRKPRVRLEALIHGGGH-----------------ERGMRSGTLPTHQIVGMGEAFRIAKE-EMAQDT 265 (402)
T ss_pred hcC-CCceEEEEEccCCCCCCCceecCCCc-----------------cCCccCCCccHHHHHHHHHHHHHHHH-hHHHHH
Confidence 888 99999999998876666776555432 45678899999999999999999875 689999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCC
Q 010538 356 RHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCN 435 (508)
Q Consensus 356 ~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~ 435 (508)
+++.++++++++.|+++ ++++++++... +.++++.+.+...++ ..+...| ++|.++.|++|+
T Consensus 266 ~~~~~l~~~l~~~l~~~------~~v~~~~~~~~-----~~p~~~~v~f~~~~~-----~~~~~~l--~~i~v~~G~~c~ 327 (402)
T TIGR02006 266 AHVLALRDRLLNGIKSI------EEVYLNGDLEH-----RVPGNLNVSFNYVEG-----ESLIMAL--KDLAVSSGSACT 327 (402)
T ss_pred HHHHHHHHHHHHHHhcC------CCEEEeCCccc-----cCCCeEEEEEeCcCH-----HHHHHhc--CCEEEechhhcC
Confidence 99999999999999987 37888875432 224444455544322 2354444 699999999998
Q ss_pred chHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhhh
Q 010538 436 PGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQF 504 (508)
Q Consensus 436 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~~ 504 (508)
+... .+++++.++|.. .....++||+|+++|||.+|||+++++|+++++.++.
T Consensus 328 ~~~~------~~~~~l~~lg~~----------~~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~~~~~ 380 (402)
T TIGR02006 328 SASL------EPSYVLRALGIN----------DELAHSSIRFTIGRFTTEEEIDYAVKLVKSAIDKLRE 380 (402)
T ss_pred CCCC------CccHHHHHcCCC----------hhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 7542 467778888752 1123589999999999999999999999998876644
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-44 Score=370.57 Aligned_cols=371 Identities=19% Similarity=0.193 Sum_probs=302.7
Q ss_pred CeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHH
Q 010538 41 TVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVG 120 (508)
Q Consensus 41 ~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~ 120 (508)
++|||+++++++++.+++++.+ ++...++||.+.+..+....+..+++|+.+|+++|++++ +|++|+|+|+++++++
T Consensus 1 ~~yld~a~~~~~~~~v~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~--~i~~~~g~t~a~~~~~ 77 (381)
T PRK02948 1 MIYLDYAATTPMSKEALQTYQK-AASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQ--GIYFTSGGTESNYLAI 77 (381)
T ss_pred CEeccCCCCCCCCHHHHHHHHH-HHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCC--eEEEeCcHHHHHHHHH
Confidence 4899999999999999998865 555667788776666677778899999999999999988 8999999999999888
Q ss_pred hhcC---CCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCC
Q 010538 121 EAFP---WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP 197 (508)
Q Consensus 121 ~~l~---~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~ 197 (508)
.++. .++|++|+++..+||++....+.++..|++++.+|.+.++.+ |+++++ +++
T Consensus 78 ~~~~~~~~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~---------------d~~~l~--~~l----- 135 (381)
T PRK02948 78 QSLLNALPQNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDKSGLI---------------RLVDLE--RAI----- 135 (381)
T ss_pred HHHHHhccCCCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeCCCCCC---------------CHHHHH--Hhc-----
Confidence 7763 256899999999999998888888888999999998766555 688888 555
Q ss_pred CCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccc
Q 010538 198 AGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIF 277 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~ 277 (508)
.+++++|++++++|+||.++|+++|.++|++ +|+++++|++|++|..++++.++++|++++|+||++
T Consensus 136 -~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~------------~~~~vivD~~~~~g~~~~~~~~~~~d~~~~s~~K~~ 202 (381)
T PRK02948 136 -TPDTVLASIQHANSEIGTIQPIAEIGALLKK------------YNVLFHSDCVQTFGKLPIDVFEMGIDSLSVSAHKIY 202 (381)
T ss_pred -CCCCEEEEEECCcCCcEeehhHHHHHHHHHH------------cCCEEEEEChhhccccccCcccCCCCEEEecHHhcC
Confidence 4568999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred cCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHH
Q 010538 278 GYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRH 357 (508)
Q Consensus 278 g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~ 357 (508)
| |.|+|+++++++.. +.+...++. ...+++.||+|+++++++.++++.+.+ .+++++++
T Consensus 203 g-p~G~G~l~~~~~~~--~~~~~~~~~-----------------~~~~~~~~t~~~~~~~a~~~al~~~~~-~~~~~~~~ 261 (381)
T PRK02948 203 G-PKGVGAVYINPQVR--WKPVFPGTT-----------------HEKGFRPGTVNVPGIAAFLTAAENILK-NMQEESLR 261 (381)
T ss_pred C-CCcEEEEEEcCCCC--CCCcccCCC-----------------CCCCcCCCCccHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 8 99999999988751 233322221 145678899999999999999998755 48899999
Q ss_pred HHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCch
Q 010538 358 IASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPG 437 (508)
Q Consensus 358 ~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~ 437 (508)
+.++++++++.|+++ ++++....... ...+.++.|.+++.++ .++...|.++||.++.|.+|+.+
T Consensus 262 ~~~~~~~l~~~L~~~-------~~~v~~~~~~~---~~~~~i~~~~~~~~~~-----~~~~~~l~~~gI~v~~g~~c~~~ 326 (381)
T PRK02948 262 FKELRSYFLEQIQTL-------PLPIEVEGHST---SCLPHIIGVTIKGIEG-----QYTMLECNRRGIAISTGSACQVG 326 (381)
T ss_pred HHHHHHHHHHHHhcC-------CCCEEEeCCCc---cCcCCEEEEEeCCCCH-----HHHHHhcccCCEEEEchHhcCCC
Confidence 999999999999987 33333221110 1235688888765432 34677888899999999999875
Q ss_pred HHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 438 ACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 438 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
.. .+|+++.+||... ....+++|||+++|||.+|+++++++|+++++.
T Consensus 327 ~~------~p~~~~~~~~~~~----------~~~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 374 (381)
T PRK02948 327 KQ------EPSKTMLAIGKTY----------EEAKQFVRFSFGQQTTKDQIDTTIHALETIGNQ 374 (381)
T ss_pred CC------CCCHHHHHcCCCh----------HHhCceEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 42 5788888887410 012578999999999999999999999987653
|
|
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=367.03 Aligned_cols=377 Identities=23% Similarity=0.268 Sum_probs=302.2
Q ss_pred chHHHHHHhhccCCCC-CeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCC
Q 010538 25 SIDQIRATEFKRLENG-TVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKD 103 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~~-~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~ 103 (508)
.+..+|. +||.++++ .+|||+++++++|+.+++++.+.+ .....++...+..........+++++.+++++|++++
T Consensus 2 ~~~~~r~-~f~~~~~~~~~yl~~~~~~~~p~~v~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~- 78 (397)
T TIGR01976 2 DVEAVRG-QFPALADGDRVFFDNPAGTQIPQSVADAVSAAL-TRSNANRGGAYESSRRADQVVDDAREAVADLLNADPP- 78 (397)
T ss_pred ChhHHHh-hCCcCCCCCeEEecCCccCCCCHHHHHHHHHHH-HhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCC-
Confidence 3567898 99998433 799999999999999998876644 3333445444443334567789999999999999887
Q ss_pred ceEEEcCChHHHHHHHHhhc--CCCCCCeEEEecccccchHH-HHHHHHhcCCeEEEEccCC-ccCcccccccccccccc
Q 010538 104 YKCIFTSGATAALKLVGEAF--PWSHQSSYMYTMENHNSVLG-IREYALSQGAAAFAIDVEE-AVDNDGLSESLVTSTKI 179 (508)
Q Consensus 104 ~~i~~t~g~t~al~~~~~~l--~~~~g~~vl~~~~~h~s~~~-~~~~~~~~G~~v~~v~~~~-~~~~~~l~~~~~~~~~~ 179 (508)
+|++++|+|++++++..++ .+++|++|+++..+|++... |...++..|++++.++.+. ++.+
T Consensus 79 -~v~~~~~~t~~l~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~------------- 144 (397)
T TIGR01976 79 -EVVFGANATSLTFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEATGEL------------- 144 (397)
T ss_pred -eEEEeCCHHHHHHHHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEeccccCCCc-------------
Confidence 7999999999999888776 36789999999999988754 4466677899999999875 4444
Q ss_pred ccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCC
Q 010538 180 SLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPP 259 (508)
Q Consensus 180 ~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~ 259 (508)
++++++ +++ +++|++|++++++|+||.+.|+++|.++|++ +|+++++|++|+.|..++
T Consensus 145 --~~~~l~--~~i------~~~~~lv~i~~~~n~tG~~~~~~~i~~~~~~------------~~~~~ivD~a~~~~~~~~ 202 (397)
T TIGR01976 145 --HPDDLA--SLL------SPRTRLVAVTAASNTLGSIVDLAAITELVHA------------AGALVVVDAVHYAPHGLI 202 (397)
T ss_pred --CHHHHH--Hhc------CCCceEEEEeCCCCCCCccCCHHHHHHHHHH------------cCCEEEEehhhhccccCC
Confidence 678888 555 4678999999999999999999999999998 899999999999999999
Q ss_pred CCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHH
Q 010538 260 DLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASI 339 (508)
Q Consensus 260 d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l 339 (508)
++.++++|++++|+|||+| |. +|+++++++.++.+.+....+.. .....+++.||+++..++++
T Consensus 203 ~~~~~~~d~~~~s~~K~~g-~~-~G~l~~~~~~~~~l~~~~~~~~~--------------~~~~~~~~~gt~~~~~~~~l 266 (397)
T TIGR01976 203 DVQATGADFLTCSAYKFFG-PH-MGILWGRPELLMNLPPYKLTFSY--------------DTGPERFELGTPQYELLAGV 266 (397)
T ss_pred CHHHcCCCEEEEechhhcC-Cc-eEEEEEcHHHHhhCCCccccCcc--------------CCCcchhcCCCCCHHHHHHH
Confidence 9999999999999999998 85 89999999998877765432210 12356789999999999999
Q ss_pred HHHHHHHHhcC--------------hHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEee
Q 010538 340 RHGFNLINSLT--------------VPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLK 405 (508)
Q Consensus 340 ~~al~~~~~~g--------------~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 405 (508)
.+|++++.+.| ++.+.+++.++++++++.|+++ ++++++.+... ..++++++|.++
T Consensus 267 ~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~------~~~~~~~~~~~----~~~~~~~~~~~~ 336 (397)
T TIGR01976 267 VAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDL------PGVTLYGVARL----AARVPTVSFTVH 336 (397)
T ss_pred HHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcC------CCEEEeCCCCc----cCCCceEEEEeC
Confidence 99999988776 6788999999999999999987 36888876321 124789998886
Q ss_pred CCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCH
Q 010538 406 RPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTF 485 (508)
Q Consensus 406 ~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ 485 (508)
+. +..++.+.|.++||.++.|+.|.++. .+++|++ ...+++|||+|+|||+
T Consensus 337 ~~-----~~~~l~~~L~~~gI~v~~~~~~~~~~-~~~~~~~-----------------------~~~~~iRis~~~~~t~ 387 (397)
T TIGR01976 337 GL-----PPQRVVRRLADQGIDAWAGHFYAVRL-LRRLGLN-----------------------DEGGVVRVGLAHYNTA 387 (397)
T ss_pred Cc-----CHHHHHHHHHHCCeEEEeCccchHHH-HHHhCCC-----------------------CCCCeEEEEeeccCCH
Confidence 53 23458899999999999998886543 1222211 1257899999999999
Q ss_pred HHHHHHHHhh
Q 010538 486 EDAKVNRCSS 495 (508)
Q Consensus 486 eev~~l~~~~ 495 (508)
+|+++++++|
T Consensus 388 ~di~~l~~~l 397 (397)
T TIGR01976 388 EEVDRLLEAL 397 (397)
T ss_pred HHHHHHHHhC
Confidence 9999998864
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-43 Score=367.17 Aligned_cols=383 Identities=16% Similarity=0.153 Sum_probs=284.0
Q ss_pred chHHHHHHhhccCC----CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchh-hhhhHHHHHHHHHHHHHcCC
Q 010538 25 SIDQIRATEFKRLE----NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDIS-LATCDIVRAAREQVLDYFNA 99 (508)
Q Consensus 25 ~~~~~r~~~f~~~~----~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~la~~~~~ 99 (508)
.++.+|+ +||.+. ++++|||+++.+++|+.+.+++. .++..+..++...+..+ ..+....++.++ + +++|+
T Consensus 9 ~~~~~r~-~f~~~~~~~~~~~iyld~~a~g~~p~~v~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~l~g~ 84 (406)
T TIGR01814 9 PLRALRD-EFHLPKIGDENAVIYLDGNSLGLMPKAARNALK-EELDKWAKIAIRGHNTGKAPWFTLDESLLK-L-RLVGA 84 (406)
T ss_pred hHHHHHH-hcCCCcccCCCCcEEecCCCcCcCcHHHHHHHH-HHHHHHHHhhhccCccCCCChhhhhhhhcc-c-cccCC
Confidence 7888998 999762 46899999999988777776654 45443222222222111 112233333434 5 89999
Q ss_pred CCCCceEEEcCChHHHHHHHHhhcCCCC---CCeEEEecccccchHHH-HHHHHhcCCeE----EEEccCCccCcccccc
Q 010538 100 SMKDYKCIFTSGATAALKLVGEAFPWSH---QSSYMYTMENHNSVLGI-REYALSQGAAA----FAIDVEEAVDNDGLSE 171 (508)
Q Consensus 100 ~~~~~~i~~t~g~t~al~~~~~~l~~~~---g~~vl~~~~~h~s~~~~-~~~~~~~G~~v----~~v~~~~~~~~~~l~~ 171 (508)
+++ +|+||+|+|+++++++.++ +++ +++|+++..+||+.... ...+++.|+++ +.++.+.++.+
T Consensus 85 ~~~--~v~~~~~~t~~l~~~~~~~-~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~----- 156 (406)
T TIGR01814 85 KED--EVVVMNTLTINLHLLLASF-YKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPREEETL----- 156 (406)
T ss_pred CCC--cEEEeCCchHHHHHHHHHh-cCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCCCCcc-----
Confidence 988 8999999999999999997 443 34788888999987664 44566778887 46666544444
Q ss_pred ccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEecc
Q 010538 172 SLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAA 251 (508)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a 251 (508)
++++++ +.++ ..+++|++|++++++|.||.+.|+++|.++||+ +|+++++|++
T Consensus 157 ----------~~~~l~--~~~~---~~~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~------------~g~~~~vD~a 209 (406)
T TIGR01814 157 ----------RLEDIL--DTIE---KNGDDIAVILLSGVQYYTGQLFDMAAITRAAHA------------KGALVGFDLA 209 (406)
T ss_pred ----------CHHHHH--HHHH---hcCCCeEEEEEeccccccceecCHHHHHHHHHH------------cCCEEEEEcc
Confidence 456665 4442 125789999999999999999999999999998 8999999999
Q ss_pred ccCCCCCCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCC
Q 010538 252 KGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTA 331 (508)
Q Consensus 252 ~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 331 (508)
|++|..|+|+.++++||+++|+|||+++|+| |+++++++....+.|...||........ ..........+.+++.||+
T Consensus 210 q~~G~~~id~~~~gvD~~~~s~hK~l~g~pG-~~l~v~~~~~~~~~p~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~GT~ 287 (406)
T TIGR01814 210 HAVGNVPLDLHDWGVDFACWCTYKYLNAGPG-AGAFVHEKHAHTERPRLAGWWGHARPTR-FKMDNTLGLIPCGFRISNP 287 (406)
T ss_pred cccCCcccccccCCCCEEEEcCccccCCCCC-eEEEEehhhhhhcCCCCCcccCCCCccc-cccccccCCCccceeeCCc
Confidence 9999999999999999999999998765668 8788877766567777666532111000 0000001122467889999
Q ss_pred ChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCc
Q 010538 332 SFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSW 411 (508)
Q Consensus 332 ~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 411 (508)
|+++++++.++++++.+.|++.+++++..+++++++.|+++.+ +.++++++++... ..++++++|.++ .++
T Consensus 288 ~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~--~~~~~~i~~~~~~----~~r~~~v~~~~~-~~~-- 358 (406)
T TIGR01814 288 PILSVAALRGSLDIFDQAGMEALRKKSLLLTDYLEELIKARCG--GPPVLTIITPRDH----AQRGCQLSLTHP-VPG-- 358 (406)
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcC--CCCceEEeCCCCh----hhcCCeEEEEec-CCH--
Confidence 9999999999999999999999999999999999999987520 1135888886532 234789999987 322
Q ss_pred cCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEec-CCCCCHHHHHH
Q 010538 412 FGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSF-GYMSTFEDAKV 490 (508)
Q Consensus 412 ~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~-~~~~t~eev~~ 490 (508)
.++.+.|.++||.+... ..+.||+|+ |+|||.+||++
T Consensus 359 ---~~~~~~L~~~gi~v~~~---------------------------------------~~~~iRiS~~~~~nt~~did~ 396 (406)
T TIGR01814 359 ---KAVFQALIKRGVIGDKR---------------------------------------EPSVIRVAPVPLYNTFVDVYD 396 (406)
T ss_pred ---HHHHHHHHHCCEEEecc---------------------------------------CCCeEEEechhccCCHHHHHH
Confidence 35888898999986421 146899999 79999999999
Q ss_pred HHHhhhhhh
Q 010538 491 NRCSSFDFV 499 (508)
Q Consensus 491 l~~~~~~~~ 499 (508)
++++|++++
T Consensus 397 l~~~l~~~~ 405 (406)
T TIGR01814 397 AVNVLEEIL 405 (406)
T ss_pred HHHHHHHHh
Confidence 999998764
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-41 Score=345.37 Aligned_cols=368 Identities=23% Similarity=0.309 Sum_probs=298.9
Q ss_pred eeeeCCCCCCCCHHHHHHHHHHhhccccCCCCC-ccchhhhhhHHHHHHHHHHHHHcCCC-CCCceEEEcCChHHHHHHH
Q 010538 42 VYLDHAGATLYSELQMEAIFRDFTTNVYGNPHS-QSDISLATCDIVRAAREQVLDYFNAS-MKDYKCIFTSGATAALKLV 119 (508)
Q Consensus 42 iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~~~~-~~~~~i~~t~g~t~al~~~ 119 (508)
+|||+++++++|+.+++++.+ ++...+.+|++ .+..+....+...++++.+++++|++ ++ ++++|+|+|++++++
T Consensus 1 ~yl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~--~v~~~~g~t~a~~~~ 77 (373)
T cd06453 1 VYLDNAATSQKPQPVIDAIVD-YYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPD--EIIFTRNTTEAINLV 77 (373)
T ss_pred CcccCccccCCCHHHHHHHHH-HHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCC--eEEEeCCHHHHHHHH
Confidence 599999999999999998876 44566777765 34555667788899999999999998 66 899999999999999
Q ss_pred HhhcCCC--CCCeEEEecccccchHHH-HHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCC
Q 010538 120 GEAFPWS--HQSSYMYTMENHNSVLGI-REYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERD 196 (508)
Q Consensus 120 ~~~l~~~--~g~~vl~~~~~h~s~~~~-~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~ 196 (508)
+.++... +|++|+++..+|++.... ...++..|++++.|+.+.++.+ |+++++ +.+
T Consensus 78 ~~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~--~~l---- 136 (373)
T cd06453 78 AYGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDDDGQL---------------DLEALE--KLL---- 136 (373)
T ss_pred HHHhhhcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCCCCCc---------------CHHHHH--HHh----
Confidence 9998543 789999999999986544 4445578999999998765555 688888 555
Q ss_pred CCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEecccc
Q 010538 197 PAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKI 276 (508)
Q Consensus 197 ~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~ 276 (508)
.+++++|++++++|+||.+.|+++|.++|++ +|+++++|++++.|..++++.+.++|++++|+||+
T Consensus 137 --~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~------------~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~ 202 (373)
T cd06453 137 --TERTKLVAVTHVSNVLGTINPVKEIGEIAHE------------AGVPVLVDGAQSAGHMPVDVQDLGCDFLAFSGHKM 202 (373)
T ss_pred --cCCceEEEEeCcccccCCcCCHHHHHHHHHH------------cCCEEEEEhhhhcCceeeeccccCCCEEEeccccc
Confidence 4578999999999999999999999999998 89999999999999999999888999999999999
Q ss_pred ccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHH
Q 010538 277 FGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICR 356 (508)
Q Consensus 277 ~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~ 356 (508)
++ +.|+|+++++++.++.+.+...++....... .... .......+++.||+++..++++.++++++.+.|++.+.+
T Consensus 203 ~~-~~g~g~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~-~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~ 278 (373)
T cd06453 203 LG-PTGIGVLYGKEELLEEMPPYGGGGEMIEEVS--FEET-TYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAA 278 (373)
T ss_pred cC-CCCcEEEEEchHHhhcCCCeecCCCcccccc--cccc-ccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 99 5789999999999888887665543322110 0000 111235667889999999999999999999889999999
Q ss_pred HHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCc
Q 010538 357 HIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNP 436 (508)
Q Consensus 357 ~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~ 436 (508)
++.++++++.+.|+++ ++++++.+.. .+.++++|.+++. +..++.+.|.++||.++.|..|..
T Consensus 279 ~~~~~~~~l~~~l~~~------~~~~~~~~~~------~~~~~~~~~~~~~-----~~~~i~~~l~~~gi~i~~g~~~~~ 341 (373)
T cd06453 279 HEHELTAYALERLSEI------PGVRVYGDAE------DRAGVVSFNLEGI-----HPHDVATILDQYGIAVRAGHHCAQ 341 (373)
T ss_pred HHHHHHHHHHHHHhcC------CCeEEeCCcc------ccCCeEEEEECCc-----CHHHHHHHHHHCCEEeccCccchh
Confidence 9999999999999987 4688875432 2378899988653 334588899999999999988876
Q ss_pred hHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhh
Q 010538 437 GACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSS 495 (508)
Q Consensus 437 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~ 495 (508)
+.. .++|. .++||+|+++++|.+|+|++++.|
T Consensus 342 ~~~------------~~~~~---------------~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 342 PLM------------RRLGV---------------PGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred HHH------------HHhCC---------------CCeEEEEecCCCCHHHHHHHHhhC
Confidence 532 12221 578999999999999999998864
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=344.95 Aligned_cols=371 Identities=23% Similarity=0.309 Sum_probs=291.5
Q ss_pred eeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCC-ccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHH
Q 010538 42 VYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHS-QSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLV 119 (508)
Q Consensus 42 iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~ 119 (508)
+|||+++++ ++|+.+.+++.+ +......+++. .+..........+++++.+++++|++..+ +|++|+|+|++++++
T Consensus 1 ~yld~a~~~~~~p~~v~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~v~~~~g~t~al~~~ 78 (376)
T TIGR01977 1 IYFDNAATTYPKPDEVYEAMAD-FYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSA-HVVFTNNATTALNIA 78 (376)
T ss_pred CCccCcccCCCCCHHHHHHHHH-HHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCC-eEEEeCCHHHHHHHH
Confidence 699999877 566777777655 44443334443 23333344577889999999999996432 799999999999999
Q ss_pred HhhcCCCCCCeEEEecccccchHHH-HHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCC
Q 010538 120 GEAFPWSHQSSYMYTMENHNSVLGI-REYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPA 198 (508)
Q Consensus 120 ~~~l~~~~g~~vl~~~~~h~s~~~~-~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~ 198 (508)
+.++ +++|++|+++..+|+++... ...++..|.+++.++.+.++.+ |+++++ +++
T Consensus 79 ~~~~-~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~--~~~------ 134 (376)
T TIGR01977 79 LKGL-LKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDNEGLI---------------SPERIK--RAI------ 134 (376)
T ss_pred HHhc-cCCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCc---------------CHHHHH--Hhc------
Confidence 9997 78899999999999987654 3455667999999998765555 688888 555
Q ss_pred CCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEecccccc
Q 010538 199 GDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFG 278 (508)
Q Consensus 199 ~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g 278 (508)
++++++|++++++|+||.++|+++|.++|++ +|+++++|++|++|..++++..+++|++++|+|||++
T Consensus 135 ~~~~~~v~~~~~~n~tG~~~~~~~i~~l~~~------------~~~~livD~a~~~g~~~~~~~~~~~D~~~~s~~K~l~ 202 (376)
T TIGR01977 135 KTNTKLIVVSHASNVTGTILPIEEIGELAQE------------NGIFFILDAAQTAGVIPIDMTELAIDMLAFTGHKGLL 202 (376)
T ss_pred CCCCeEEEEECCCCCccccCCHHHHHHHHHH------------cCCEEEEEhhhccCccCCCchhcCCCEEEeccccccc
Confidence 4578999999999999999999999999998 8999999999999999999999999999999999988
Q ss_pred CCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHH
Q 010538 279 YPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHI 358 (508)
Q Consensus 279 ~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~ 358 (508)
+|.|+|+++++++. .+++...++... .. ..+. .......+++.||++++.++++.++++++.+.|++.+.+|+
T Consensus 203 ~p~g~g~l~~~~~~--~~~~~~~~~~~~-~~---~~~~-~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~ 275 (376)
T TIGR01977 203 GPQGTGGLYIREGI--KLKPLKSGGTGS-HS---ALID-QPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKE 275 (376)
T ss_pred CCCCceEEEEcCCc--CcCceecCCCcc-cc---cccc-ccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 79999999999876 255554443211 00 0111 11123467889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhC-CCeeccCCCCCch
Q 010538 359 ASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLS-GIQLRTGCFCNPG 437 (508)
Q Consensus 359 ~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~-gI~v~~g~~~~~~ 437 (508)
+.+++++++.|.+. ++++++.+..+ ..+.++++|.+++.+ ..++.+.|.++ ||.++.|.+|+..
T Consensus 276 ~~l~~~~~~~l~~~------~~~~~~~~~~~----~~~~~~v~~~~~~~~-----~~~~~~~L~~~~gi~v~~g~~~~~~ 340 (376)
T TIGR01977 276 CMLTEKLLNGLREI------NKVKIYGPADP----ANRVGVVSFTVEGID-----SEEVADILDEKFDIATRTGLHCAPL 340 (376)
T ss_pred HHHHHHHHHHHhcC------CCeEEeCCCCc----cccCCeEEEEECCCC-----HHHHHHHHhccCCEEEEcccccchH
Confidence 99999999999987 37888876432 234789999987543 34588888877 9999999988764
Q ss_pred HHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhh
Q 010538 438 ACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFD 497 (508)
Q Consensus 438 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~ 497 (508)
.. + ++| ....+.+|+|++.+||.+||++++++|++
T Consensus 341 ~~-~-----------~~g-------------~~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 341 AH-K-----------TIG-------------TFATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred HH-H-----------HhC-------------CCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 31 1 121 12367999999999999999999999875
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=346.69 Aligned_cols=346 Identities=23% Similarity=0.271 Sum_probs=283.9
Q ss_pred eeeCCCCCCCCHHHHHHHHHHhhccccCCCCCc-cchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHh
Q 010538 43 YLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQ-SDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGE 121 (508)
Q Consensus 43 yld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~ 121 (508)
|||+++++++++.+++++.+ ++...+++|+.. +..+....+.++++|+.+++++|++++ +|+||+|+|+++++++.
T Consensus 1 yld~a~~~~~~~~v~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~--~v~~~~g~t~a~~~~l~ 77 (353)
T TIGR03235 1 YLDHNATTPIDPAVAEAMLP-WLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTE--EVIFTSGATESNNLAIL 77 (353)
T ss_pred CCCCCCCCCCCHHHHHHHHH-HHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCC--eEEEeCCHHHHHHHHHH
Confidence 89999999999999988765 444446777753 333445667889999999999999988 89999999999999888
Q ss_pred hcCC---CCC-CeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCC
Q 010538 122 AFPW---SHQ-SSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP 197 (508)
Q Consensus 122 ~l~~---~~g-~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~ 197 (508)
++.. .+| ++|+++..+||++......++..|++++.+|.+.++.+ |+++++ +++
T Consensus 78 ~l~~~~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~---------------d~~~l~--~~l----- 135 (353)
T TIGR03235 78 GLARAGEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVDESGRI---------------DVDELA--DAI----- 135 (353)
T ss_pred HHHHhcccCCCCeeeEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcC---------------CHHHHH--HhC-----
Confidence 8732 344 78999999999988777777778999999998766655 688888 555
Q ss_pred CCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccc
Q 010538 198 AGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIF 277 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~ 277 (508)
++++++|++++++|+||.++|+++|.++|++ +|+++++|++|++|..++|+.++++|++++|+|||+
T Consensus 136 -~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~------------~~~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~ 202 (353)
T TIGR03235 136 -RPDTLLVSIMHVNNETGSIQPIREIAEVLEA------------HEAFFHVDAAQVVGKITVDLSADRIDLISCSGHKIY 202 (353)
T ss_pred -CCCCEEEEEEcccCCceeccCHHHHHHHHHH------------cCCEEEEEchhhcCCccccccccCCCEEEeehhhcC
Confidence 4578999999999999999999999999998 899999999999999999999999999999999998
Q ss_pred cCCCcceEEEEechhHhh--hccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHH
Q 010538 278 GYPTGLGALIMRNDAAKL--LKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAIC 355 (508)
Q Consensus 278 g~P~G~G~l~~~~~~~~~--l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~ 355 (508)
| |.|+|+++++++.... +.|.+++++. .++++.||++++.++++.++++++. .+++.+.
T Consensus 203 g-p~g~g~l~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~ 263 (353)
T TIGR03235 203 G-PKGIGALVIRKRGKPKAPLKPIMFGGGQ-----------------ERGLRPGTLPVHLIVGMGEAAEIAR-RNAQAWE 263 (353)
T ss_pred C-CCceEEEEEccCcccccccCceeeCCCC-----------------cCccccCCCChHHHHHHHHHHHHHH-hhHHHHH
Confidence 7 9999999999886432 4555554432 4678899999999999999999876 4789999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCC
Q 010538 356 RHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCN 435 (508)
Q Consensus 356 ~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~ 435 (508)
+++.++++++++.|++. |++++.++.. +..++++|.+++.+ ..++.+.|++ ||.+++|..|+
T Consensus 264 ~~~~~l~~~l~~~l~~~-------g~~~~~~~~~-----~~~~i~~~~~~~~~-----~~~v~~~L~~-~i~v~~g~~~~ 325 (353)
T TIGR03235 264 VKLRAMRNQLRDALQTL-------GVKLNGDPAE-----TIPHILNFSIDGVN-----SEALIVNLRA-DAAVSTGSACS 325 (353)
T ss_pred HHHHHHHHHHHHHhccC-------CeEEeCCccc-----ccCCEEEEEeCCcC-----HHHHHHHHhC-CeEEEchhhcC
Confidence 99999999999999874 7998876542 34678999887543 3458888865 99999999998
Q ss_pred chHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEec
Q 010538 436 PGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSF 479 (508)
Q Consensus 436 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~ 479 (508)
.+.. .+++++.+||.. .....+.+|+|+
T Consensus 326 ~~~~------~~~~~l~~~g~~----------~~~~~~~~r~s~ 353 (353)
T TIGR03235 326 SSKY------EPSHVLQAMGLD----------TDRARGAIRFSW 353 (353)
T ss_pred CCCC------CCCHHHHHcCCC----------HHHhCccEEEeC
Confidence 7642 467899999863 112358899986
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=348.43 Aligned_cols=372 Identities=21% Similarity=0.250 Sum_probs=294.1
Q ss_pred CCeeeeCCCCCCCCHHHHHHHHHHhhc--cccCCCCCc-cchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHH
Q 010538 40 GTVYLDHAGATLYSELQMEAIFRDFTT--NVYGNPHSQ-SDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAAL 116 (508)
Q Consensus 40 ~~iyld~~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al 116 (508)
..||||+++++++++.+++++.+ ++. ..++++++. +..++.....++++|+.+++++|++++ +|++++|+|+|+
T Consensus 3 ~~iyld~a~~~~~~~~v~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~--~v~~~~g~t~al 79 (404)
T PRK14012 3 LPIYLDYSATTPVDPRVAEKMMP-YLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPR--EIVFTSGATESD 79 (404)
T ss_pred ceEEecCcCCCCCCHHHHHHHHH-HHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcC--eEEEeCCHHHHH
Confidence 36999999999999999888755 443 446677652 223444457788999999999999988 899999999999
Q ss_pred HHHHhhcC---CCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCC
Q 010538 117 KLVGEAFP---WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFP 193 (508)
Q Consensus 117 ~~~~~~l~---~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~ 193 (508)
++++.++. .++|++|+++..+|+++......++..|++++.++.+.++.+ |+++++ +++
T Consensus 80 ~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~~g~~---------------d~~~l~--~~i- 141 (404)
T PRK14012 80 NLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQSNGII---------------DLEKLE--AAM- 141 (404)
T ss_pred HHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccCCCCcC---------------CHHHHH--Hhc-
Confidence 99887763 467899999999999987776666678999999998876666 688898 555
Q ss_pred CCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEec
Q 010538 194 ERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSF 273 (508)
Q Consensus 194 ~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~ 273 (508)
+++|++|++++++|+||.+.|+++|.++|++ +|+++++|++|++|..++++..+++|++++|+
T Consensus 142 -----~~~t~lv~~~~~~n~tG~~~~~~~I~~la~~------------~g~~vivD~a~~~g~~~~~~~~~~~D~~~~s~ 204 (404)
T PRK14012 142 -----RDDTILVSIMHVNNEIGVIQDIAAIGEICRE------------RGIIFHVDAAQSVGKVPIDLSKLKVDLMSFSA 204 (404)
T ss_pred -----CCCCEEEEEECcCCCccchhhHHHHHHHHHH------------cCCEEEEEcchhcCCcccCcccCCCCEEEEeh
Confidence 5678999999999999999999999999998 89999999999999999999999999999999
Q ss_pred cccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHH
Q 010538 274 YKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPA 353 (508)
Q Consensus 274 ~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~ 353 (508)
||++| |.|+|+++++++...++.|...|++. .++++.||+++..++++.++++++.. +.+.
T Consensus 205 ~K~~g-p~g~G~l~~~~~~~~~~~~~~~g~~~-----------------~~~~~~gt~~~~~~~~l~~al~~~~~-~~~~ 265 (404)
T PRK14012 205 HKIYG-PKGIGALYVRRKPRVRLEAQMHGGGH-----------------ERGMRSGTLPTHQIVGMGEAARIAKE-EMAT 265 (404)
T ss_pred hhccC-CCceEEEEEecCCCCCCCceecCCCc-----------------cCCccCCCcCHHHHHHHHHHHHHHHh-hHHH
Confidence 99887 98999999998865556665555432 34577899999999999999998754 5788
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCc--eEEEEeeCCCCCccCHHHHHHHHhhCCCeeccC
Q 010538 354 ICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGS--MVSFNLKRPDGSWFGYREVEKLASLSGIQLRTG 431 (508)
Q Consensus 354 i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g 431 (508)
+.++..++++++.+.|+++ +++++.++... +..+ .++|.+.+ . .++.+.| +++.|++|
T Consensus 266 ~~~~~~~l~~~l~~~L~~~------~~i~~~~~~~~-----~~~~~~~~~~~~~~--~-----~~~~~~l--~~~~i~~g 325 (404)
T PRK14012 266 ENERIRALRDRLWNGIKDI------EEVYLNGDLEQ-----RVPGNLNVSFNYVE--G-----ESLIMAL--KDLAVSSG 325 (404)
T ss_pred HHHHHHHHHHHHHHHHhcC------CCEEEeCCccc-----cCCCEEEEEEeCcC--H-----HHHHHhC--CCeEEEch
Confidence 8999999999999999887 46777654321 1123 45555432 1 2355655 48888999
Q ss_pred CCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhhh
Q 010538 432 CFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQF 504 (508)
Q Consensus 432 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~~ 504 (508)
..|.+... .++..+.+++.. .....+.||+|++.++|++||+++++.|+++++.++.
T Consensus 326 ~~~~~~~~------~~~~~~~~~~~~----------~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~~~~~ 382 (404)
T PRK14012 326 SACTSASL------EPSYVLRALGLN----------DELAHSSIRFSLGRFTTEEEIDYAIELVRKSIGKLRE 382 (404)
T ss_pred hhhCCCCC------CCCHHHHHcCCC----------hhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 88876431 223344444421 1123689999999999999999999999998877654
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=320.08 Aligned_cols=361 Identities=12% Similarity=0.061 Sum_probs=265.2
Q ss_pred hccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcC-Ch
Q 010538 34 FKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTS-GA 112 (508)
Q Consensus 34 f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~-g~ 112 (508)
.|.+.+..+||+.+.+++++..|++++...+. +..+. +..+.+.++++|+.+++++|++.. |+|+|++ |+
T Consensus 6 ~~~~~~~~~~f~~Gp~~~~~~~v~~a~~~~~~----~~~hr----~~~f~~~~~~~r~~l~~l~~~~~~-~~v~~~~gs~ 76 (378)
T PRK03080 6 IPALRPADPRFSSGPCKKRPGWQLEALADALL----GRSHR----QKPVKALLKRVIEGTRELLSLPEG-YEVGIVPGSD 76 (378)
T ss_pred CCCcCCCCCCcCCCCcCCChHHHHHHHHhhhc----ccCcC----CHHHHHHHHHHHHHHHHHhCCCCC-ceEEEECCch
Confidence 35554678999999888755548888764332 12222 235678999999999999999542 3799885 99
Q ss_pred HHHHHHHHhhcCCCC-CCeEEEecccccchHHHHHH-HHhcCC-eEEEEccCCccCccccccccccccccccchhhhhcC
Q 010538 113 TAALKLVGEAFPWSH-QSSYMYTMENHNSVLGIREY-ALSQGA-AAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKG 189 (508)
Q Consensus 113 t~al~~~~~~l~~~~-g~~vl~~~~~h~s~~~~~~~-~~~~G~-~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~ 189 (508)
|.++++++.++ +++ +..|+. ..+|++ .|... .++.|+ +++.++.+..... |+++++
T Consensus 77 T~~~~~~~~~l-~~~~~~~vi~-~g~f~~--~~~~~~~~~~g~~~v~~~~~~~g~~~---------------d~~~i~-- 135 (378)
T PRK03080 77 TGAWEMALWSL-LGARRVDHLA-WESFGS--KWATDVVKQLKLEDPRVLEADYGSLP---------------DLSAVD-- 135 (378)
T ss_pred HHHHHHHHHhc-CCCCcceEEE-eCHHHH--HHHHHHHhhcCCCCceEeccCCCCCC---------------CHhhcC--
Confidence 99999999998 554 444544 578877 45553 356788 9999987644333 344443
Q ss_pred CCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEE
Q 010538 190 ASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFV 269 (508)
Q Consensus 190 ~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~ 269 (508)
. +++|+++|++|.||.++|+++|.+ |+ +|++++||++|++|+.|+|+.+ +||+
T Consensus 136 ----------~-~~~V~~~h~~t~tG~~~pi~~I~~--~~------------~g~~~vVDa~qs~G~~pidv~~--iD~~ 188 (378)
T PRK03080 136 ----------F-DRDVVFTWNGTTTGVRVPVARWIG--AD------------REGLTICDATSAAFALPLDWSK--LDVY 188 (378)
T ss_pred ----------C-CCCEEEEecCCccceeccchhhcc--cc------------CCCeEEEecccccccCCCCHHH--CcEE
Confidence 1 467999999999999999999988 65 8999999999999999999997 7999
Q ss_pred EEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccC---CCCChhHHHHHHHHHHHH
Q 010538 270 VMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFED---GTASFLSIASIRHGFNLI 346 (508)
Q Consensus 270 ~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---gt~~~~~~~~l~~al~~~ 346 (508)
++|+|||+++|.|+|++++++++++++.|...+|.... ..++.........+++. +|+++..++++.++++++
T Consensus 189 ~~s~~K~l~~P~G~g~l~v~~~~~~~~~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l 264 (378)
T PRK03080 189 TFSWQKVLGGEGGHGMAILSPRAVERLESYTPARPIPK----FFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWA 264 (378)
T ss_pred EEehhhhCCCCCceEEEEECHHHHHhhhcccCCCCCch----hheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHH
Confidence 99999999889999999999999998888765553211 11111000011223443 456777788889999999
Q ss_pred Hhc-ChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCC
Q 010538 347 NSL-TVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSG 425 (508)
Q Consensus 347 ~~~-g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~g 425 (508)
.+. |++.+.+|++++++++++.|+++. +++++.+... .+...+++|++++.+. ..+. ++.+.|.++|
T Consensus 265 ~~~gG~e~i~~r~~~l~~~l~~~l~~~~------~~~~~~~~~~----~~s~~i~~~~~~~~~~-~~~~-~~~~~l~~~~ 332 (378)
T PRK03080 265 NSIGGLDALIARTAANASVLYDWAEKTP------WATPLVADPA----TRSNTSVTLDFVDAQA-AVDA-AAVAKLLREN 332 (378)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHhCC------CcccccCCcc----ccCccEEEEEcCCchH-HHHH-HHHHHHHHcC
Confidence 998 899999999999999999999883 5677653221 1224689998876110 0112 2455566679
Q ss_pred CeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 426 IQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 426 I~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
|.++.|.+|. ..+.+|+|+++|||.+||++++++|+++++-+
T Consensus 333 i~v~~g~~~~-----------------------------------~~~~vRis~~~~~t~~di~~l~~al~~~~~~~ 374 (378)
T PRK03080 333 GAVDIEPYRD-----------------------------------APNGLRIWCGPTVEPADVEALTPWLDWAFERL 374 (378)
T ss_pred CeeccccccC-----------------------------------CCCcEEEecCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9988865431 14789999999999999999999999876643
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=314.73 Aligned_cols=362 Identities=14% Similarity=0.033 Sum_probs=280.6
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKL 118 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~ 118 (508)
++..+|.+.+.+..++.+++++..... .+ .+....++++++++.+++++|++.++ .+++++++|.+++.
T Consensus 7 ~~~~~l~~pGP~~~~~~V~~a~~~~~~------~~----~~~~~~~~~~~~~~~l~~~~g~~~~~-~vi~~~~gt~a~~~ 75 (401)
T PLN02409 7 PGRNHLFVPGPVNIPERVLRAMNRPNE------DH----RSPAFPALTKELLEDVKYIFKTKSGT-PFIFPTTGTGAWES 75 (401)
T ss_pred CCCceeccCCCCCCCHHHHHHhcCCCC------CC----CCHHHHHHHHHHHHHHHHHhCCCCCC-EEEEeCCcHHHHHH
Confidence 456788889999999999988744221 11 13346778999999999999997642 78999999999999
Q ss_pred HHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCC
Q 010538 119 VGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPA 198 (508)
Q Consensus 119 ~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~ 198 (508)
++.++ +++|++|+++..+|++.. |...+++.|++++.++.+....+ ++++++ +++++. .
T Consensus 76 a~~~~-~~~Gd~Vlv~~~~~~~~~-~~~~~~~~g~~v~~v~~~~~~~~---------------~~~~l~--~~l~~~--~ 134 (401)
T PLN02409 76 ALTNT-LSPGDKVVSFRIGQFSLL-WIDQMQRLNFDVDVVESPWGQGA---------------DLDILK--SKLRQD--T 134 (401)
T ss_pred HHHhc-CCCCCEEEEeCCCchhHH-HHHHHHHcCCceEEEECCCCCCC---------------CHHHHH--HHHhhC--c
Confidence 99887 789999999988887654 56777888999999998754334 577887 665321 0
Q ss_pred CCCceEEEEeCCCCCCccccCHHHHHHH--HcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEecccc
Q 010538 199 GDAYNLFAFPSECNFSGSRFNLDLINIM--KKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKI 276 (508)
Q Consensus 199 ~~~t~lv~~~~~~n~tG~~~~i~~i~~l--~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~ 276 (508)
.+++++|+++|++|+||.++|+++|.++ |++ +|+++++|++|++|..|+|+.++++|++++|+|||
T Consensus 135 ~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~------------~g~~~vvD~v~s~g~~~id~~~~~~D~~~~s~~K~ 202 (401)
T PLN02409 135 NHKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQ------------HPALLLVDGVSSIGALDFRMDEWGVDVALTGSQKA 202 (401)
T ss_pred CCCccEEEEEeecccccccCCHHHHHHHHhhhc------------cCcEEEEEcccccCCccccccccCccEEEEcCccc
Confidence 1378999999999999999999999999 887 89999999999999999999999999999999999
Q ss_pred ccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccC-ccccccCCCCChhHHHHHHHHHHHHHhcChHHHH
Q 010538 277 FGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQG-VEELFEDGTASFLSIASIRHGFNLINSLTVPAIC 355 (508)
Q Consensus 277 ~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~ 355 (508)
+++|.|+|++++++++++++.+.-..... .+|...... ....++.+|++++.++++.++++++.+.|+++++
T Consensus 203 l~~P~G~G~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~ 275 (401)
T PLN02409 203 LSLPTGLGIVCASPKALEASKTAKSPRVF-------FDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVI 275 (401)
T ss_pred cCcCCCcceeEECHHHHHHHhcCCCCCee-------cCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHH
Confidence 98799999999999998877653111000 001000000 0112346799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHH-hhCCCeeccCCCC
Q 010538 356 RHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLA-SLSGIQLRTGCFC 434 (508)
Q Consensus 356 ~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L-~~~gI~v~~g~~~ 434 (508)
+++.++++++++.|+++ +++++.+... .+...+++|.++.. ++..++.+.| +++||.+..|..+
T Consensus 276 ~~~~~l~~~l~~~L~~~-------g~~~~~~~~~----~~s~~v~~~~~p~~----~~~~~l~~~l~~~~~i~i~~G~~~ 340 (401)
T PLN02409 276 ARHARLGEATRLAVEAW-------GLKLCTKKPE----WRSDTVTAVVVPEG----IDSAEIVKNAWKKYNLSLGLGLNK 340 (401)
T ss_pred HHHHHHHHHHHHHHHHc-------CCeeccCChh----hcccceEEEeCCCC----CCHHHHHHHHHHhCCEEEEcCCCc
Confidence 99999999999999886 6888875321 12346677877532 3334466555 6789999987531
Q ss_pred CchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 435 NPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 435 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
.+++.+||+.+.|+|.+|+.+++.++.+.++-
T Consensus 341 -----------------------------------~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~ 372 (401)
T PLN02409 341 -----------------------------------VAGKVFRIGHLGNVNELQLLGALAGVEMVLKD 372 (401)
T ss_pred -----------------------------------ccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 13678999999999999999999999986653
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=298.17 Aligned_cols=350 Identities=13% Similarity=0.067 Sum_probs=266.4
Q ss_pred CCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCC
Q 010538 46 HAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPW 125 (508)
Q Consensus 46 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~ 125 (508)
+++..++++.+++++.+... . ..+....+..+++++.+++++|+++.. .+++++|+|+++.+++.++ .
T Consensus 4 ~~~~~~~~~~v~~a~~~~~~-------~---~~~~~~~~~~~~~~~~la~~~g~~~~~-~~~~~~~~t~al~~~~~~~-~ 71 (356)
T cd06451 4 IPGPSNVPPRVLKAMNRPML-------G---HRSPEFLALMDEILEGLRYVFQTENGL-TFLLSGSGTGAMEAALSNL-L 71 (356)
T ss_pred cCCCcCCCHHHHHHhCCCcc-------C---CCCHHHHHHHHHHHHHHHHHhcCCCCC-EEEEecCcHHHHHHHHHHh-C
Confidence 35666678888887643211 1 112234567889999999999995431 6889999999999999998 5
Q ss_pred CCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEE
Q 010538 126 SHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLF 205 (508)
Q Consensus 126 ~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv 205 (508)
.+|+.|+++...|++. .+...++..|++++.+|.+.+..+ |+++++ ++++ .+++++|
T Consensus 72 ~~g~~vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~---------------~~~~l~--~~i~-----~~~~~~v 128 (356)
T cd06451 72 EPGDKVLVGVNGVFGD-RWADMAERYGADVDVVEKPWGEAV---------------SPEEIA--EALE-----QHDIKAV 128 (356)
T ss_pred CCCCEEEEecCCchhH-HHHHHHHHhCCCeEEeecCCCCCC---------------CHHHHH--HHHh-----ccCCCEE
Confidence 7899999987777653 244556678999999998765444 578888 5552 1378999
Q ss_pred EEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCcceE
Q 010538 206 AFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGA 285 (508)
Q Consensus 206 ~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G~G~ 285 (508)
++++++|++|.+.|+++|.++|++ +|+++++|++|++|..++++...++|++++|+|||+++|.|+|+
T Consensus 129 ~i~~~~~~~G~~~~~~~i~~~a~~------------~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~l~~p~g~G~ 196 (356)
T cd06451 129 TLTHNETSTGVLNPLEGIGALAKK------------HDALLIVDAVSSLGGEPFRMDEWGVDVAYTGSQKALGAPPGLGP 196 (356)
T ss_pred EEeccCCCcccccCHHHHHHHHHh------------cCCEEEEeeehhccCccccccccCccEEEecCchhccCCCCcce
Confidence 999999999999999999999998 89999999999999999999888999999999999998989999
Q ss_pred EEEechhHhhhcc--ccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 010538 286 LIMRNDAAKLLKN--TYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGM 363 (508)
Q Consensus 286 l~~~~~~~~~l~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~ 363 (508)
+++++++++.+.+ ...++.. ... .+... .....++.+++++..++++.++++++.+.|++.+.++..++++
T Consensus 197 l~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~--~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~ 269 (356)
T cd06451 197 IAFSERALERIKKKTKPKGFYF---DLL--LLLKY--WGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAK 269 (356)
T ss_pred eEECHHHHHHHHhcCCCCceee---cHH--HHHhh--hcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999998877653 2222110 000 00000 0122367789999999999999999988899999999999999
Q ss_pred HHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhC-CCeeccCCCCCchHHHhh
Q 010538 364 YVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLS-GIQLRTGCFCNPGACAKY 442 (508)
Q Consensus 364 ~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~-gI~v~~g~~~~~~~~~~~ 442 (508)
++++.|.++ +++++.++.. +.+.++++.++.. .+...+.+.|.++ ||.+++|..|.
T Consensus 270 ~l~~~L~~~-------g~~~~~~~~~-----~~~~~~~~~~~~~----~~~~~~~~~L~~~~gI~~~~g~~~~------- 326 (356)
T cd06451 270 ALREGLEAL-------GLKLLAKPEL-----RSPTVTAVLVPEG----VDGDEVVRRLMKRYNIEIAGGLGPT------- 326 (356)
T ss_pred HHHHHHHHc-------CCeeccCccc-----CCCceEEEECCCC----CCHHHHHHHHHHhCCEEEecccccc-------
Confidence 999999986 6777755321 2234445665432 2445688999888 99999876432
Q ss_pred cCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 443 LGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 443 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
.++++|+|++.++|.+||++++++|++.++
T Consensus 327 ----------------------------~~~~iRis~~~~~~~e~v~~~~~~l~~~~~ 356 (356)
T cd06451 327 ----------------------------AGKVFRIGHMGEATREDVLGVLSALEEALK 356 (356)
T ss_pred ----------------------------cCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 146899999999999999999999988653
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=293.22 Aligned_cols=330 Identities=12% Similarity=0.027 Sum_probs=250.0
Q ss_pred hhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEcc
Q 010538 81 ATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDV 160 (508)
Q Consensus 81 ~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~ 160 (508)
.+...++++|+.+++++|++++..+|++|+|+|+|++.++.++..+++++|++...+|+.. +...+++.|++++.++.
T Consensus 32 ~~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~~~~~~vlv~~~~~~~~~--~~~~a~~~g~~~~~v~~ 109 (363)
T TIGR02326 32 DYNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAVPKDGKLLVVINGAYGAR--IVQIAEYLGIPHHVVDT 109 (363)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcCCCCCeEEEEeCChhhHH--HHHHHHHcCCceEEEeC
Confidence 4667889999999999999753116999999999999999998554555566666666542 23556778999999998
Q ss_pred CCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCC
Q 010538 161 EEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFS 240 (508)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~ 240 (508)
+.++.+ |+++++ +++++ .++++++++++++|+||.++|+++|.++||+
T Consensus 110 ~~~~~~---------------d~~~l~--~~l~~----~~~~~~v~~~~~~~~tG~~~~i~~I~~l~~~----------- 157 (363)
T TIGR02326 110 GEVEPP---------------DVVEVE--AILAA----DPAITHIALVHCETTTGILNPIEAVAKLAHR----------- 157 (363)
T ss_pred CCCCCC---------------CHHHHH--HHHhh----CCCccEEEEEeecCCccccCcHHHHHHHHHH-----------
Confidence 765555 578888 66532 2456889999999999999999999999998
Q ss_pred CCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhcc
Q 010538 241 KGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQ 320 (508)
Q Consensus 241 ~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~ 320 (508)
+|+++++|++|++|..|+++.++++|++++|+|||+++|.|+|+++++++.++.+.+...+.. ... ...|... .
T Consensus 158 -~g~~livD~~~~~g~~~~~~~~~~~D~~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~-~ 231 (363)
T TIGR02326 158 -HGKVTIVDAMSSFGGIPIDIAELHIDYLISSANKCIQGVPGFGFVIARQAELAACKGNARSLS---LDL-YDQWRCM-E 231 (363)
T ss_pred -cCCEEEEEccccccCcccchhhcCccEEEecCccccccCCcceEEEECHHHHHHhhcCCCcee---ecH-HHHHHHH-h
Confidence 999999999999999999999999999999999988669999999999998776554321110 000 0001000 0
Q ss_pred CccccccCCCCChhHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCce
Q 010538 321 GVEELFEDGTASFLSIASIRHGFNLINSL-TVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSM 399 (508)
Q Consensus 321 ~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (508)
. .......|++.+.++++.++++.+.+. |++++.+++.++++++++.|+++ +++++.++.. +.+.+
T Consensus 232 ~-~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~~-----~~~~~ 298 (363)
T TIGR02326 232 D-NHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRAL-------GFEPLLDDEI-----QSPII 298 (363)
T ss_pred c-cCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-------CCeeccCccc-----CCceE
Confidence 0 011122367888999999999877554 68999999999999999999887 5777655432 22345
Q ss_pred EEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEec
Q 010538 400 VSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSF 479 (508)
Q Consensus 400 v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~ 479 (508)
++|.+++..+ ++...+.+.|.++||.+++|..+ ..+++|||+
T Consensus 299 ~~~~~~~~~~--~~~~~v~~~L~~~gi~v~~g~~~------------------------------------~~~~iRi~~ 340 (363)
T TIGR02326 299 TSFYSPEDPD--YRFADFYQRLKEQGFVIYPGKVS------------------------------------QVDCFRIGN 340 (363)
T ss_pred EEEECCCCCC--CCHHHHHHHHHHCCEEEECCcCC------------------------------------CCCEEEEec
Confidence 6788764211 23446888999999999987532 146899999
Q ss_pred CCCCCHHHHHHHHHhhhhhhhh
Q 010538 480 GYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 480 ~~~~t~eev~~l~~~~~~~~~~ 501 (508)
+.++|.+|+++++++|++++.|
T Consensus 341 ~~~~~~edv~~~l~~l~~~l~~ 362 (363)
T TIGR02326 341 IGEVDAADITRLLTAIGKAMYW 362 (363)
T ss_pred CCCCCHHHHHHHHHHHHHHhCC
Confidence 9899999999999999998765
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=296.19 Aligned_cols=342 Identities=16% Similarity=0.161 Sum_probs=245.0
Q ss_pred CCCCCCCHHHHHHHHHHhhccccCCCCCc-cchh---hhhhHHHHHHHHHHHHHcCCCCCCceEEEcCC-hHHHHHHHHh
Q 010538 47 AGATLYSELQMEAIFRDFTTNVYGNPHSQ-SDIS---LATCDIVRAAREQVLDYFNASMKDYKCIFTSG-ATAALKLVGE 121 (508)
Q Consensus 47 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g-~t~al~~~~~ 121 (508)
++.+++|+.|++++.+.+ .+. +|++.. +..+ ....+.++++|+.+++++|++.+ ++|+||+| +|+++++++.
T Consensus 5 pGp~~~p~~V~~a~~~~~-~~~-~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~-~~vvf~~gs~T~a~~~~~~ 81 (355)
T cd00611 5 AGPAALPEEVLEQAQKEL-LDF-NGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDN-YKVLFLQGGATGQFAAVPL 81 (355)
T ss_pred CCCCCCCHHHHHHHHHHH-hhc-ccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC-ceEEEEcCCchHHHHHHHH
Confidence 556677999999986644 333 366642 3333 45668999999999999998432 38999988 9999999999
Q ss_pred hcCC--CCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCC
Q 010538 122 AFPW--SHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAG 199 (508)
Q Consensus 122 ~l~~--~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~ 199 (508)
++.. .++++|++...+| .+.+.+++.|++++.++.+.++.+.+. ++..+ . ..+
T Consensus 82 ~l~~~~~~~~~i~~g~~~~----~~~~~a~~~g~~~~~~~~~~~g~~~~~-------------~~~~~--~------~~~ 136 (355)
T cd00611 82 NLLGDKGTADYVVTGAWSA----KAAKEAKRYGGVVVIVAAKEEGKYTKI-------------PDVET--W------DLA 136 (355)
T ss_pred hcCCCCCeEEEEECCHHHH----HHHHHHHhcCCCcEEEecccccCCCCC-------------CCHhh--c------CCC
Confidence 9932 3566776644333 345577888999999987644322110 11222 1 125
Q ss_pred CCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccC
Q 010538 200 DAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGY 279 (508)
Q Consensus 200 ~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~ 279 (508)
++|++|+++|++|.||..++ ++++. +|++++||++|++|+.|+|+.+++ ++++|+||+||
T Consensus 137 ~~~~lV~~~h~~t~tG~~~~-----~i~~~------------~g~~~~VDa~qs~g~~~idv~~~~--~~~ss~~K~lG- 196 (355)
T cd00611 137 PDAAYVHYCSNETIHGVEFD-----EVPDT------------GGVPLVADMSSNILSRPIDVSKFG--VIYAGAQKNLG- 196 (355)
T ss_pred CCCCEEEEeCCcccccEEcc-----eeccc------------CCCeEEEEccccccCCCCCHHHhC--EEEeecccccC-
Confidence 78999999999999999843 34444 899999999999999999999866 45577999998
Q ss_pred CCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhc-ChHHHHHHH
Q 010538 280 PTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSL-TVPAICRHI 358 (508)
Q Consensus 280 P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~i~~~~ 358 (508)
|+|+|++++++++++++.|..... ..+.... ......||||+.+++++.++++++.+. |++.+.+|.
T Consensus 197 P~G~g~l~~~~~~~~~~~~~~~~~---------~~~~~~~---~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~ 264 (355)
T cd00611 197 PAGVTVVIVRKDLLGKARKITPSM---------LNYKTHA---DNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRN 264 (355)
T ss_pred CCceEEEEECHHHHhhcccCCCCc---------ccHHHHH---hcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999998877652211 0111100 111236899999999999999999998 899999999
Q ss_pred HHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchH
Q 010538 359 ASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGA 438 (508)
Q Consensus 359 ~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~ 438 (508)
+++++++++.|++++ |+.. .+.... .+.+.+++|++++. .+. .+....+.+.|+.+..+..
T Consensus 265 ~~l~~~l~~~l~~~~------gl~~-~~~~~~---~rs~~vvsf~~~~~---~l~-~~~~~~~~r~G~~~~~~~~----- 325 (355)
T cd00611 265 RQKAQLLYDTIDNSN------GFYR-GPVDKR---ARSRMNVPFRLGKE---ELE-KEFLKEAEAAGMIGLKGHR----- 325 (355)
T ss_pred HHHHHHHHHHHHhCc------cccc-cCCCHH---HcCceEEEEEcCCh---hhh-HHHHHHHHHCCCcccCCCc-----
Confidence 999999999999984 5411 111110 12235699998764 111 1233455557776444321
Q ss_pred HHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 439 CAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 439 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
..+.+|+|+++|||.+||++|+++|+++.
T Consensus 326 --------------------------------~~g~vR~S~~~~nt~edi~~l~~al~~~~ 354 (355)
T cd00611 326 --------------------------------SVGGIRASIYNALSLEGVQALADFMKEFQ 354 (355)
T ss_pred --------------------------------ccCeEEEEccCCCCHHHHHHHHHHHHHHh
Confidence 14789999999999999999999998864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=286.16 Aligned_cols=357 Identities=13% Similarity=0.064 Sum_probs=264.2
Q ss_pred CCCeeeeCCC--------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC-C-CCceEEE
Q 010538 39 NGTVYLDHAG--------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS-M-KDYKCIF 108 (508)
Q Consensus 39 ~~~iyld~~~--------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~-~~~~i~~ 108 (508)
...+|+|+++ ++++.|.+.+.+.. .+...++||.+. +.. .++.+++++++++++|++ + + ++.+
T Consensus 32 ~~~iyld~~a~~~~~~~~tt~~~p~~~~~~~~-~l~~~~~np~s~---~~~-~~le~~~~~~la~llg~~~~~~--~~~g 104 (431)
T TIGR01788 32 HDELSLDGNPRLNLATFVTTWMEPEARKLMDE-TINKNMIDKDEY---PQT-AEIENRCVNMLADLWHAPAKDA--EAVG 104 (431)
T ss_pred HHHhhhcCCcceeeeeeeCCCCCHHHHHHHHH-HHhcCCCCcccC---ccH-HHHHHHHHHHHHHHhCCCCCCC--CCeE
Confidence 3477899998 89989988777655 444445666542 223 388999999999999998 3 4 4555
Q ss_pred --cCChHHHHHHHHhhcCC-------CC-----CCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc-cCcccccccc
Q 010538 109 --TSGATAALKLVGEAFPW-------SH-----QSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA-VDNDGLSESL 173 (508)
Q Consensus 109 --t~g~t~al~~~~~~l~~-------~~-----g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~-~~~~~l~~~~ 173 (508)
|+|+|+|+++++.+... +. ..+|++++.+|+++....+. .|++++.||++.. +.+
T Consensus 105 ~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka~~~---lg~~v~~i~~d~~~~~v------- 174 (431)
T TIGR01788 105 TSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFARY---FDVELREVPMDPGRYVI------- 174 (431)
T ss_pred EEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHHHHH---cCceeEEEecCCCceee-------
Confidence 89999999988765421 11 24799999999988766554 4899999999864 355
Q ss_pred ccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC------CeEEE
Q 010538 174 VTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG------RWMVL 247 (508)
Q Consensus 174 ~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~------g~~vi 247 (508)
|+++++ ++| +++|.+|++++++|.||.+.|+++|.++|++ + |++++
T Consensus 175 --------d~~~L~--~~i------~~~t~lV~~t~g~t~tG~idpi~~I~~i~~~------------~~~~~~~~~~~H 226 (431)
T TIGR01788 175 --------DPEQVV--EAV------DENTIGVVCILGTTYTGEYEDVKALNDALDE------------YNAKTGWDIPIH 226 (431)
T ss_pred --------CHHHHH--HHH------hhCCeEEEEEeCCCCCcccCCHHHHHHHHHH------------HHhhhCCCceEE
Confidence 688888 555 4678999999999999999999999999997 7 89999
Q ss_pred Eecccc-------CCCCCCCCCCCCCcEEEEeccccccCCCcceEEEEechh--Hhhhc--cccccCceEEecccchhhh
Q 010538 248 IDAAKG-------CVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDA--AKLLK--NTYFSGGTVAASIADIDFV 316 (508)
Q Consensus 248 vD~a~~-------~g~~~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~--~~~l~--~~~~g~~~~~~~~~~~~~~ 316 (508)
||++|+ .+..+.++...++|++++|+|||+.+|.|+|+++++++. ...+. +.+.++...
T Consensus 227 vDaaq~g~~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~g~G~l~~r~~~~l~~~~~~~~~yl~~~~~---------- 296 (431)
T TIGR01788 227 VDAASGGFIAPFVYPDLEWDFRLPRVKSINVSGHKYGLVYPGVGWVIWRDEEALPEELIFHVNYLGGDEP---------- 296 (431)
T ss_pred EecccHHHHHHHhCCCchhhcCCCCceEEEECchhccCCCCCcEEEEEeChHHcchhheecccccCCCCC----------
Confidence 999999 566677777668899999999987449999999998762 11121 113332110
Q ss_pred hhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCC
Q 010538 317 KRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDT 396 (508)
Q Consensus 317 ~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 396 (508)
.... .++.+....++++..+..+...|++++.+++.+++++|.+.|++. ++++++.+.. +
T Consensus 297 ------~~t~-~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~------~~~el~~~~~-------~ 356 (431)
T TIGR01788 297 ------TFTL-NFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKL------GPFEIISDGS-------G 356 (431)
T ss_pred ------Ccce-ecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhC------CCEEEeeCCC-------C
Confidence 0011 123333344556777777778899999999999999999999998 4799997632 2
Q ss_pred CceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEE
Q 010538 397 GSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIR 476 (508)
Q Consensus 397 ~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iR 476 (508)
.++|+|++++.+....+..++.+.|.++|+.+..- ..+.. + ...-.+|
T Consensus 357 ~~iV~Fr~~~~~~~~~~~~~l~~~L~~~G~~~~~~---~~p~~--------------~---------------~~~~~lR 404 (431)
T TIGR01788 357 IPLVAFKLKDDADPGYTLYDLSHRLRERGWIVPAY---TLPKN--------------A---------------EDIVVMR 404 (431)
T ss_pred ceEEEEEeCCCCCCCcCHHHHHHHHHHCCCcccCC---CCCCc--------------c---------------CCeEEEE
Confidence 79999999753322355667999999999976431 11110 0 0135699
Q ss_pred EecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 477 VSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 477 is~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
+++....+.+-++.+++.|++.+..+
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (431)
T TIGR01788 405 IVVREGFSRDLAELLIEDIEAALAYL 430 (431)
T ss_pred EEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 99998999999999999999887654
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=283.96 Aligned_cols=340 Identities=14% Similarity=0.073 Sum_probs=266.2
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKL 118 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~ 118 (508)
....|+.+......+...+++++... .+.++||.+.+..+....++.+++++++|+++|+++++...+||+|+|++++.
T Consensus 21 ~~~~~~g~p~~~~~~~~~~~~~~~~~-~~n~gnp~~~~~~g~~~~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~ 99 (380)
T PRK02769 21 NQYFNVGYPEAADFDYSALKRFFSFS-INNCGDPYSKSNYPLNSFDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLY 99 (380)
T ss_pred hhhcccCCCchhhcCHHHHHHHHHhh-hccCCCccccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHH
Confidence 45667777777776667777776644 34567888766556667788889999999999998762124899999999876
Q ss_pred HHhhc-CCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCC
Q 010538 119 VGEAF-PWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP 197 (508)
Q Consensus 119 ~~~~l-~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~ 197 (508)
++.+. .+.++++|++++.+|+|+....+.+ |.+.+.||.+.++.+ |+++++ ++|++.
T Consensus 100 a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~~l---g~~~~~V~~~~~g~i---------------d~~~L~--~~i~~~-- 157 (380)
T PRK02769 100 GCYLARELFPDGTLYYSKDTHYSVSKIARLL---RIKSRVITSLPNGEI---------------DYDDLI--SKIKEN-- 157 (380)
T ss_pred HHHHHHHhCCCcEEEeCCCceehHHHHHHHc---CCCCceeccCCCCcC---------------cHHHHH--HHHHhC--
Confidence 65443 2356789999999999988666554 777778888766666 688888 666432
Q ss_pred CCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCC---eEEEEeccccCCCCC-------CCCCCCCCc
Q 010538 198 AGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGR---WMVLIDAAKGCVTQP-------PDLSKYPVD 267 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g---~~vivD~a~~~g~~~-------~d~~~~~~D 267 (508)
+.+|.+|++++++|+||.+.|+++|.++|++ +| ++++||++|+.+..| +|+.. ++|
T Consensus 158 -~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~------------~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~-~vD 223 (380)
T PRK02769 158 -KNQPPIIFANIGTTMTGAIDNIKEIQEILKK------------IGIDDYYIHADAALSGMILPFVNNPPPFSFAD-GID 223 (380)
T ss_pred -CCCcEEEEEEeCCCCCcccCCHHHHHHHHHH------------hCCCceEEEEEecccceeecccCccccCCccC-CCC
Confidence 4569999999999999999999999999997 77 799999999998885 77777 899
Q ss_pred EEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH
Q 010538 268 FVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN 347 (508)
Q Consensus 268 ~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~ 347 (508)
++++|+|||+++|.|+|+++++++....+.+.. .+. ........||++....++++++++++.
T Consensus 224 sis~s~HK~~~~P~g~G~l~~r~~~~~~~~~~~------~yl-----------~~~d~t~~GSR~g~~~l~lw~aL~~lg 286 (380)
T PRK02769 224 SIAISGHKFIGSPMPCGIVLAKKKYVERISVDV------DYI-----------GSRDQTISGSRNGHTALLLWAAIRSLG 286 (380)
T ss_pred EEEECCcccCCCCCCcEEEEEehhhhhhcccCc------ccc-----------CCCCCCccCCCCcHHHHHHHHHHHHHC
Confidence 999999999888999999999998766554310 000 001224579999999999999999999
Q ss_pred hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCe
Q 010538 348 SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQ 427 (508)
Q Consensus 348 ~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~ 427 (508)
..|++++.+++.++++++.+.|++. +++++..+. .++|+|..++. .+. +|..
T Consensus 287 ~~G~~~~~~~~~~la~~l~~~L~~~-------g~~~~~~p~--------~~~v~f~~~~~--------~~~-----~~w~ 338 (380)
T PRK02769 287 SKGLRQRVQHCLDMAQYAVDRLQAN-------GIPAWRNPN--------SITVVFPCPSE--------RIW-----KKWH 338 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-------CCEEEcCCC--------ceEEEEcCCCH--------HHH-----hCee
Confidence 9999999999999999999999885 688887654 78888875431 121 5655
Q ss_pred eccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 428 LRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 428 v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
+.+- .+.+|+.+...+|.+.||.+++-|.....
T Consensus 339 l~~~----------------------------------------~~~~hi~~~~~~~~~~~~~f~~dl~~~~~ 371 (380)
T PRK02769 339 LATS----------------------------------------GNQAHIITMPHHNKQQIDSLIDELIFDLK 371 (380)
T ss_pred Eccc----------------------------------------CCEEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 5431 35899999999999999999988776554
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-32 Score=277.12 Aligned_cols=339 Identities=16% Similarity=0.125 Sum_probs=245.8
Q ss_pred CCCHHHHHHHHHHhhccccCCCCC-ccch---hhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCC-hHHHHHHHHhhcCC
Q 010538 51 LYSELQMEAIFRDFTTNVYGNPHS-QSDI---SLATCDIVRAAREQVLDYFNASMKDYKCIFTSG-ATAALKLVGEAFPW 125 (508)
Q Consensus 51 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g-~t~al~~~~~~l~~ 125 (508)
++|.+|++++.+.+ .+.. +.+. .+.. +....++++++++.++++++++.+ |+|+|++| +|.|++.++.++ .
T Consensus 2 ~~p~~v~~~~~~~~-~~~~-~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~-~~v~~~~gsgT~a~ea~~~nl-~ 77 (349)
T TIGR01364 2 ALPEEVLEQAQKEL-LNFN-GTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDN-YEVLFLQGGATGQFAAVPLNL-L 77 (349)
T ss_pred CCCHHHHHHHHHHH-hCcc-CCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCC-ceEEEEcCCchHHHHHHHHhc-C
Confidence 46888999886654 3322 4443 2322 344558999999999999998433 47888866 999999999998 4
Q ss_pred CCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCcc-CccccccccccccccccchhhhhcCCCCCCCCCCCCCceE
Q 010538 126 SHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAV-DNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNL 204 (508)
Q Consensus 126 ~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~-~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~l 204 (508)
.+++.+++.....-+ ..|.+.+++.|+ +..+..+..+ ..+.+ ++++++ .++++++
T Consensus 78 ~~~~~~l~i~~G~fg-~r~~~~a~~~g~-~~~~~~~~~~~~~~~~------------~~~~~~----------~~~~~~~ 133 (349)
T TIGR01364 78 AEGKVADYIVTGAWS-KKAAKEAKKYGV-VNVVASGKEGNYTKIP------------DPSTWE----------ISEDAAY 133 (349)
T ss_pred CCCCeEEEEECCHHH-HHHHHHHHHhCC-cEEEeccccCCCCCCC------------CHHhcC----------CCCCCCE
Confidence 466665544322222 246788888898 7777654322 11111 334333 1357899
Q ss_pred EEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCcce
Q 010538 205 FAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLG 284 (508)
Q Consensus 205 v~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G~G 284 (508)
|+++|+.|.||...| ++++. ++++++||++|++|+.|+|+.++ |++++|+||++| |+|+|
T Consensus 134 v~~th~ETstGv~~~-----~l~~~------------~~~l~iVDavss~g~~~id~~~~--d~~~~ssqK~lg-P~Glg 193 (349)
T TIGR01364 134 VHYCANETIHGVEFR-----ELPDV------------KNAPLVADMSSNILSRPIDVSKF--GLIYAGAQKNIG-PAGLT 193 (349)
T ss_pred EEEcCCCCcccEecc-----eeccc------------CCCeEEEEccccccCccCCHHHc--cEEEEecccccC-CCceE
Confidence 999999999999887 55554 89999999999999999999975 599999999998 99999
Q ss_pred EEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhc-ChHHHHHHHHHHHH
Q 010538 285 ALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSL-TVPAICRHIASLGM 363 (508)
Q Consensus 285 ~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~i~~~~~~l~~ 363 (508)
++++++++++++.|.... ..+|.... ......||||+..++++.++++++.+. |++++.+|..++++
T Consensus 194 ~l~~s~~~~~~~~~~~~~---------~~~~~~~~---~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~ 261 (349)
T TIGR01364 194 VVIVRKDLLGRASRITPS---------MLNYKIHA---ENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQ 261 (349)
T ss_pred EEEECHHHHhhcccCCCC---------cchHHHHH---hcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999887763211 11121110 112335899999999999999999998 79999999999999
Q ss_pred HHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhc
Q 010538 364 YVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYL 443 (508)
Q Consensus 364 ~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~ 443 (508)
++++.|++++ |+........ .+...+++|.+++. .++ .++.+.+.++|+.+..|..
T Consensus 262 ~l~~~l~~~~------gl~~~~~~~~----~rs~~v~sf~~~~~---~~~-~~~~~~~~~~Gi~~~~~~~---------- 317 (349)
T TIGR01364 262 LLYDTIDNSN------GFYRNPVDPR----NRSRMNVVFTLGNE---ELE-KRFLKEAEERGLVSLKGHR---------- 317 (349)
T ss_pred HHHHHHHhCC------CeeccCCCHH----HcCCeEEEEecCCh---hHh-HHHHHHHHHCCCcccCCcc----------
Confidence 9999999983 5544432111 12246799998754 121 2355677778887666531
Q ss_pred CCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 444 GLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 444 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
..+.+|+|+++|||.|||++|+++|+++.+
T Consensus 318 ---------------------------~~g~vRvS~~~~nt~edid~l~~al~~~~~ 347 (349)
T TIGR01364 318 ---------------------------SVGGMRASIYNAMPLEGVQALVDFMKEFQK 347 (349)
T ss_pred ---------------------------ccCeeEEECcCCCCHHHHHHHHHHHHHHHH
Confidence 147899999999999999999999998654
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=277.00 Aligned_cols=327 Identities=13% Similarity=0.064 Sum_probs=245.4
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccC
Q 010538 82 TCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVE 161 (508)
Q Consensus 82 ~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~ 161 (508)
+.+.++++++.+++++|++++...|++++|+|.+++.++.++. .+++.+++....+.+. .+...++..|++++.+|.+
T Consensus 35 ~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~-~~~~~vlv~~~~~~~~-~~~~~~~~~g~~~~~i~~~ 112 (368)
T PRK13479 35 FNALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLV-PRDGKVLVPDNGAYGA-RIAQIAEYLGIAHVVLDTG 112 (368)
T ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhcc-CCCCeEEEEeCCchHH-HHHHHHHHcCCcEEEEECC
Confidence 4467899999999999996532268899999999999999995 5556665554333222 2346677789999999987
Q ss_pred CccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCC
Q 010538 162 EAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK 241 (508)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~ 241 (508)
.+..+ |+++++ +++.+ .+++++|++++++|+||.+.|+++|.++|++
T Consensus 113 ~~~~~---------------d~~~l~--~~l~~----~~~~~~v~~~~~~~~tG~~~~~~~i~~l~~~------------ 159 (368)
T PRK13479 113 EDEPP---------------DAAEVE--AALAA----DPRITHVALVHCETTTGILNPLDEIAAVAKR------------ 159 (368)
T ss_pred CCCCC---------------CHHHHH--HHHHh----CCCCcEEEEEcccCccccccCHHHHHHHHHH------------
Confidence 55444 578887 55532 2467889999999999999999999999998
Q ss_pred CCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccc-hhhhhhcc
Q 010538 242 GRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIAD-IDFVKRRQ 320 (508)
Q Consensus 242 ~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~-~~~~~~~~ 320 (508)
+|+++++|++|++|..++++.++++|++++|+|||+++|.|+|+++++++.++.+.+....+ ..+. ..+.....
T Consensus 160 ~~~~livDa~~~~g~~~~~~~~~~~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 234 (368)
T PRK13479 160 HGKRLIVDAMSSFGAIPIDIAELGIDALISSANKCIEGVPGFGFVIARRSELEACKGNSRSL-----SLDLYDQWAYMEK 234 (368)
T ss_pred cCCEEEEEcccccCCccccccccCceEEEecCccccccCCCceEEEECHHHHHHhhcCCCCe-----eecHHHHHhhhcc
Confidence 89999999999999999999999999999999998766999999999999887766532211 0000 00100000
Q ss_pred CccccccCCCCChhHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCce
Q 010538 321 GVEELFEDGTASFLSIASIRHGFNLINSL-TVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSM 399 (508)
Q Consensus 321 ~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (508)
... ...|+++..++++.++++.+.+. +++++.+++.++++++++.|+++ +++++.++.. +...+
T Consensus 235 ~~~---~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~~-----~~~~~ 299 (368)
T PRK13479 235 TGQ---WRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRAL-------GFEPLLDAEI-----QSPII 299 (368)
T ss_pred cCC---CCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-------CCcccCCchh-----cCceE
Confidence 111 22378889999999999977554 58999999999999999999887 5776654321 22456
Q ss_pred EEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEec
Q 010538 400 VSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSF 479 (508)
Q Consensus 400 v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~ 479 (508)
++|.++..++ ++..++.+.|.++||.+++|..+ ..+++|+|.
T Consensus 300 ~~~~~~~~~~--~~~~~l~~~L~~~gi~v~~g~~~------------------------------------~~~~iRis~ 341 (368)
T PRK13479 300 VTFHAPADPA--YDFKEFYERLKEQGFVIYPGKLT------------------------------------QVDTFRIGC 341 (368)
T ss_pred EEEECCCCCC--cCHHHHHHHHHHCCEEEecCCCC------------------------------------CCCEEEEec
Confidence 7777654321 23456888999999999876321 135799999
Q ss_pred CCCCCHHHHHHHHHhhhhhhhh
Q 010538 480 GYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 480 ~~~~t~eev~~l~~~~~~~~~~ 501 (508)
+.++|.+|+++++++|+++++.
T Consensus 342 ~~~~t~edi~~~l~~L~~~l~~ 363 (368)
T PRK13479 342 IGDVDAADIRRLVAAIAEALYW 363 (368)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 8899999999999999988764
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=291.41 Aligned_cols=354 Identities=14% Similarity=0.023 Sum_probs=264.8
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhcccc--CCCCCccchhhhhhHHHHH-HHHHHHHHcCCCCCCceEEEc---CCh
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVY--GNPHSQSDISLATCDIVRA-AREQVLDYFNASMKDYKCIFT---SGA 112 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~r~~la~~~~~~~~~~~i~~t---~g~ 112 (508)
.+.+-|- ++.+.++|.+++++...+ .+.| ++|++.+..|....+.++. +|+.+++++|++++ ++.++ +|+
T Consensus 34 ~~~l~l~-~sen~~s~~v~~~~~~~l-~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~a~~~--~~~~~~~~~sg 109 (452)
T PTZ00094 34 IEGLELI-ASENFTSRAVLECLGSCF-TNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFGLDPE--EWGVNVQPYSG 109 (452)
T ss_pred HcCeeEe-cccccCCHHHHHHhcchh-hccccCCCCCccccccchHHHHHHHHHHHHHHHHhCCCcc--cceeecCCCch
Confidence 4566665 667778999988876644 4566 8999988888877888885 99999999999887 67677 789
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHh-------cCCeEEEEccCCccCccccccccccccccccchhh
Q 010538 113 TAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALS-------QGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQ 185 (508)
Q Consensus 113 t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~-------~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~ 185 (508)
++++++++.++ +++|++|++++.+|++.......++. .+.++..++++.++.+ |+++
T Consensus 110 t~an~~v~~al-~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~i---------------d~~~ 173 (452)
T PTZ00094 110 SPANFAVYTAL-LQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLI---------------DYDK 173 (452)
T ss_pred HHHHHHHHHHh-cCCCCEEEecccccCCcccccccccccccccceeeeeeeecccCCCCCc---------------CHHH
Confidence 99999999999 78899999999999887653322211 1233445555555555 6788
Q ss_pred hhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCC--
Q 010538 186 RRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSK-- 263 (508)
Q Consensus 186 l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~-- 263 (508)
++ +.+++ .++++|++. ++.+|...|+++|.++||+ +|++++||++|++|..+.++..
T Consensus 174 L~--~~l~~-----~~~~lvi~~--~s~~g~~~di~~I~~i~~~------------~ga~l~vDaaq~~G~i~~~~~~~~ 232 (452)
T PTZ00094 174 LE--ELAKA-----FRPKLIIAG--ASAYPRDIDYKRFREICDS------------VGAYLMADIAHTSGLVAAGVLPSP 232 (452)
T ss_pred HH--HHHHH-----hCCCEEEEe--CCCCCCccCHHHHHHHHHH------------cCCEEEEeccchhccccCCCCCCC
Confidence 88 55532 245666654 3569999999999999998 8999999999999999776533
Q ss_pred -CCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHH
Q 010538 264 -YPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHG 342 (508)
Q Consensus 264 -~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~a 342 (508)
.++|++++|+|||++||.| |+++++++..+.+.+.+... .+ + .+ .|+++...++++.++
T Consensus 233 ~~~~D~l~~S~hK~l~GP~G-g~l~~~~~~~~~l~~~~~~~----------~~-------p-~~-~G~~~~~~iaal~~a 292 (452)
T PTZ00094 233 FPYADVVTTTTHKSLRGPRS-GLIFYRKKVKPDIENKINEA----------VF-------P-GL-QGGPHNHQIAAIAVQ 292 (452)
T ss_pred CCCCcEEEcCCccCCCCCCc-eEEEEecccchHHHHhhccc----------cC-------C-CC-CCCchHHHHHHHHHH
Confidence 2699999999998877998 88888876544333221000 00 1 12 478889999999999
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHh
Q 010538 343 FNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLAS 422 (508)
Q Consensus 343 l~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~ 422 (508)
++++...+.+++++++.+++++|.+.|.+. |+++..+... .+..++.|..++. +...+...|+
T Consensus 293 l~~~~~~~~~~~~~~i~~l~~~l~~~L~~~-------g~~v~~~~~~-----~~~~~v~~~~~~~-----~~~~~~~~L~ 355 (452)
T PTZ00094 293 LKEVQSPEWKEYAKQVLKNAKALAAALEKR-------GYDLVTGGTD-----NHLVLVDLRPFGI-----TGSKMEKLLD 355 (452)
T ss_pred HHHHhChhHHHHHHHHHHHHHHHHHHHHhC-------CcEEecCCCC-----CceEeecCCcCCC-----CHHHHHHHHH
Confidence 999877788999999999999999999875 6777764321 1234444444333 3345889998
Q ss_pred hCCCee-ccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCC----HHHHHHHHHhhhh
Q 010538 423 LSGIQL-RTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMST----FEDAKVNRCSSFD 497 (508)
Q Consensus 423 ~~gI~v-~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t----~eev~~l~~~~~~ 497 (508)
++||.+ +.+..|.... ..+++||+|+++||| ++||++++++|.+
T Consensus 356 ~~gI~vs~~~~p~~~~~-------------------------------~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~ 404 (452)
T PTZ00094 356 AVNISVNKNTIPGDKSA-------------------------------LNPSGVRLGTPALTTRGAKEKDFKFVADFLDR 404 (452)
T ss_pred HCCcEEecccCCCCCcC-------------------------------CCCCeEEECCHHHHhCCCCHHHHHHHHHHHHH
Confidence 899999 5666665322 126899999999998 9999999999999
Q ss_pred hhhh
Q 010538 498 FVNF 501 (508)
Q Consensus 498 ~~~~ 501 (508)
.++.
T Consensus 405 ~~~~ 408 (452)
T PTZ00094 405 AVKL 408 (452)
T ss_pred HHHH
Confidence 8874
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-31 Score=268.28 Aligned_cols=325 Identities=12% Similarity=0.030 Sum_probs=243.6
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccC
Q 010538 82 TCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVE 161 (508)
Q Consensus 82 ~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~ 161 (508)
..+..+++|+.+++++|++++...|++++|+|+++.+++.++..+++++|++....|++. +...++..|.+++.++.+
T Consensus 29 ~~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~~~~~~vi~~~~~~~~~~--~~~~a~~~g~~~~~i~~~ 106 (355)
T TIGR03301 29 FNDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLVPRDGKLLVLINGAYGER--LAKICEYLGIPHTDLNFS 106 (355)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhccCCCCeEEEECCCchhhH--HHHHHHHcCCceEEEecC
Confidence 347799999999999999864225888999999999999998444344455555555442 234556679999999986
Q ss_pred CccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCC
Q 010538 162 EAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK 241 (508)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~ 241 (508)
.+..+ |+++++ +++++ +++++++++++++|+||.+.|+++|.++|++
T Consensus 107 ~~~~~---------------d~~~l~--~~l~~----~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~------------ 153 (355)
T TIGR03301 107 EYEPP---------------DLNRIE--EALAA----DPDITHVATVHHETTTGILNPLEAIAKVARS------------ 153 (355)
T ss_pred CCCCC---------------CHHHHH--HHHHh----CCCceEEEEEecCCcccchhHHHHHHHHHHH------------
Confidence 55444 578888 66532 2567889999999999999999999999998
Q ss_pred CCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccC
Q 010538 242 GRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQG 321 (508)
Q Consensus 242 ~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~ 321 (508)
+|+++++|+++++|..++++.++++|++++|+||++++|.|+|+++++++.++.+........ ... ...|....
T Consensus 154 ~~~~livD~~~s~g~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~-- 227 (355)
T TIGR03301 154 HGAVLIVDAMSSFGAIPIDIEELDVDALIASANKCLEGVPGFGFVIARRDLLEASAGNARSLY---LDL-YDQWAYME-- 227 (355)
T ss_pred cCCEEEEEeccccCCcccchhhcCccEEEecCCcccccCCceeEEEECHHHHHHhhCCCCCce---eeH-HHHHHHhh--
Confidence 899999999999999999999999999999999987658899999999999877653211110 000 00111000
Q ss_pred ccccccCCCCChhHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceE
Q 010538 322 VEELFEDGTASFLSIASIRHGFNLINSLT-VPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMV 400 (508)
Q Consensus 322 ~~~~~~~gt~~~~~~~~l~~al~~~~~~g-~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 400 (508)
..+...+|++...++++.++++.+.+.| ++++.++++++++++.+.|+++ +++++.++.. +.+.++
T Consensus 228 -~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~-------g~~~~~~~~~-----~~~~~~ 294 (355)
T TIGR03301 228 -KTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRAL-------GFQPLLPERW-----QSPIIV 294 (355)
T ss_pred -hcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHc-------CCeeecCCCC-----CCCcEE
Confidence 0122345788889999999999887766 8999999999999999999886 5776655431 124467
Q ss_pred EEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecC
Q 010538 401 SFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFG 480 (508)
Q Consensus 401 ~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~ 480 (508)
++.++.... .+..++.+.|.++||.+++|..+ ..+++||+++
T Consensus 295 ~~~~~~~~~--~~~~~~~~~l~~~gi~i~~~~~~------------------------------------~~~~iRis~~ 336 (355)
T TIGR03301 295 SFLYPDDPD--FDFDDFYQELKERGFVIYPGKLT------------------------------------LADTFRIGTI 336 (355)
T ss_pred EEECCCCCc--chHHHHHHHHHHCCEEEECCccc------------------------------------cccEEEEecC
Confidence 788764211 22345889999999999886421 1368999999
Q ss_pred CCCCHHHHHHHHHhhhhh
Q 010538 481 YMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 481 ~~~t~eev~~l~~~~~~~ 498 (508)
.++|.+|++++++.|++.
T Consensus 337 ~~~~~~~i~~~~~~l~~~ 354 (355)
T TIGR03301 337 GEIDAADIERLLEAIKDA 354 (355)
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999998864
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-31 Score=269.17 Aligned_cols=348 Identities=16% Similarity=0.109 Sum_probs=244.1
Q ss_pred CCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEc-CChHHHHHHHHhhcCC
Q 010538 47 AGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFT-SGATAALKLVGEAFPW 125 (508)
Q Consensus 47 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t-~g~t~al~~~~~~l~~ 125 (508)
.|.+.+++.+++++..... .. .. ....+....+.++++|+.++++++++.+ |+|+|+ +|+|.+++.++.++.
T Consensus 9 pGP~~~~~~v~~a~~~~~~-~~---~~-~~hr~~~f~~~~~~~r~~l~~l~~~~~~-~~v~f~~gs~T~a~~~~~~~l~- 81 (361)
T TIGR01366 9 SGPSKVRLEQLQALTTTAA-SL---FG-TSHRQAPVKNLVGRVREGLAELFSLPDG-YEVILGNGGATAFWDAATFGLI- 81 (361)
T ss_pred CCCcCCCHHHHHHHHhcCc-cc---cc-cCcCChHHHHHHHHHHHHHHHHhCCCCC-ceEEEECCchhHHHHHHHHhcc-
Confidence 3455568888888643210 01 10 1123445678999999999999999643 379886 669999999999984
Q ss_pred CCCCeEEEecccccchHH-HHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceE
Q 010538 126 SHQSSYMYTMENHNSVLG-IREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNL 204 (508)
Q Consensus 126 ~~g~~vl~~~~~h~s~~~-~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~l 204 (508)
. ++.+++...+|.+-.. +.+.....+ ++..++.++...+ + . ..+++|++
T Consensus 82 ~-~~~l~i~~G~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~--------------------~--~------~~~~~~~l 131 (361)
T TIGR01366 82 E-KKSLHLSFGEFSSKFAKAVKLAPWLG-EPIIVTADPGSAP--------------------E--P------QADPGVDV 131 (361)
T ss_pred c-ccccEEecCHHHHHHHHHHHhhhccC-CceEEecCCCCCC--------------------C--C------ccCCCCCE
Confidence 3 2444555566654322 222221233 6677766532222 2 1 12578999
Q ss_pred EEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCcce
Q 010538 205 FAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLG 284 (508)
Q Consensus 205 v~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G~G 284 (508)
|+++|++|.||.++|+++| +|+ +|++++||++|++|+.++|+.+ +|++++|+||++|+|+|++
T Consensus 132 V~~~h~et~tG~~~pi~~I---~~~------------~g~~~iVDavqs~g~~~idv~~--~D~~~~s~~K~lg~~~Gl~ 194 (361)
T TIGR01366 132 IAWAHNETSTGVAVPVRRP---EGS------------DDALVVIDATSGAGGLPVDIAE--TDVYYFAPQKNFASDGGLW 194 (361)
T ss_pred EEEcccCCccceecccccc---ccc------------CCCeEEEEcCccccCCCCCHHH--CCEEEEEchhhcCCCCceE
Confidence 9999999999999999988 465 8999999999999999999996 9999999999999777899
Q ss_pred EEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhc-ChHHHHHHHHHHHH
Q 010538 285 ALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSL-TVPAICRHIASLGM 363 (508)
Q Consensus 285 ~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~i~~~~~~l~~ 363 (508)
++++++++++++.+...++...... .++.............+|+++..++++.++++++.+. |++.+.+++.++++
T Consensus 195 ~~~~s~~~~~~~~~~~~~~~~~p~~---~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~ 271 (361)
T TIGR01366 195 LAIMSPAALERIEAIAASGRWVPEF---LSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSS 271 (361)
T ss_pred EEEECHHHHhhhhcccCCCCCCchh---hhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999998888766554322211 1111111111122345677788888999999999988 69999999999999
Q ss_pred HHHHHHhcccCCCCCceEEEecCCC-CCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhh
Q 010538 364 YVRKVLLSLRHENGADVCTIYGTYT-SEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKY 442 (508)
Q Consensus 364 ~l~~~L~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~ 442 (508)
++++.+.++. .++++.... .+ ....+.++| ++ + ++..++.+.|.++||.+..+...
T Consensus 272 ~l~~~l~~~~------~~~~~~~~~~~~---s~~v~~v~~--~~--g--~~~~~v~~~L~~~gI~i~~~~~~-------- 328 (361)
T TIGR01366 272 RLYSWAQERP------YATPFVTDPGKR---SQVVGTIDF--VD--D--IDAATVAKILRANGIVDTEPYRK-------- 328 (361)
T ss_pred HHHHHHHhCC------CcccCCCChhhc---ccceEEEEC--CC--c--cCHHHHHHHHHHCCCeeccCccc--------
Confidence 9999999983 456654321 11 011233443 22 1 45567889999999998654210
Q ss_pred cCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 443 LGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 443 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
...+.+|||++.|||.+||++++++|++.++.
T Consensus 329 ---------------------------l~~~~vRis~~~~~t~~di~~l~~al~~~~~~ 360 (361)
T TIGR01366 329 ---------------------------LGRNQLRVAMFPAIDPDDVEALTECVDWVVER 360 (361)
T ss_pred ---------------------------cCCCcEEEEcCCCCCHHHHHHHHHHHHHHHhh
Confidence 12468999999999999999999999987653
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=262.45 Aligned_cols=356 Identities=14% Similarity=0.102 Sum_probs=281.5
Q ss_pred CCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCC
Q 010538 46 HAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPW 125 (508)
Q Consensus 46 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~ 125 (508)
..+.++.++.+..++.+... . ..+..+..++.++.+.+...++.+.. +.+++++++|.|+..++.++ .
T Consensus 10 ~PGP~~v~~~V~~am~~~~~---------~-h~s~~F~~~~~~~~~~L~~v~~t~~~-~~~ll~gsGt~amEAav~sl-~ 77 (383)
T COG0075 10 TPGPVPVPPRVLLAMARPMV---------G-HRSPDFVGIMKEVLEKLRKVFGTENG-DVVLLSGSGTLAMEAAVASL-V 77 (383)
T ss_pred eCCCCCCCHHHHHHhcCCCC---------C-CCCHHHHHHHHHHHHHHHHHhcCCCC-cEEEEcCCcHHHHHHHHHhc-c
Confidence 35566679999888755321 1 23455788899999999999999842 16778899999999999999 6
Q ss_pred CCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEE
Q 010538 126 SHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLF 205 (508)
Q Consensus 126 ~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv 205 (508)
++|++||+....-.+ ..|.+.+++.|.+++.+..++...+ ++++++ ++|++ ++..++|
T Consensus 78 ~pgdkVLv~~nG~FG-~R~~~ia~~~g~~v~~~~~~wg~~v---------------~p~~v~--~~L~~----~~~~~~V 135 (383)
T COG0075 78 EPGDKVLVVVNGKFG-ERFAEIAERYGAEVVVLEVEWGEAV---------------DPEEVE--EALDK----DPDIKAV 135 (383)
T ss_pred CCCCeEEEEeCChHH-HHHHHHHHHhCCceEEEeCCCCCCC---------------CHHHHH--HHHhc----CCCccEE
Confidence 778877766532222 3578889999999999998876555 689999 88863 4778999
Q ss_pred EEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCcceE
Q 010538 206 AFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGA 285 (508)
Q Consensus 206 ~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G~G~ 285 (508)
+++|+.++||.+.|+++|++++++ ||+++|||++.++|..++++.+|++|+++++.+|.+++|+|+|+
T Consensus 136 ~~vH~ETSTGvlnpl~~I~~~~k~------------~g~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~l~~PPGla~ 203 (383)
T COG0075 136 AVVHNETSTGVLNPLKEIAKAAKE------------HGALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKALGAPPGLAF 203 (383)
T ss_pred EEEeccCcccccCcHHHHHHHHHH------------cCCEEEEEecccCCCcccchhhcCccEEEecCchhccCCCccce
Confidence 999999999999999999999998 99999999999999999999999999999999998888999999
Q ss_pred EEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Q 010538 286 LIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYV 365 (508)
Q Consensus 286 l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l 365 (508)
+.++++..+.+...-.. ++..+...|..+... .+....||++..++++..|++.+.+.|++++.+|++++++++
T Consensus 204 v~~S~~a~e~~~~~~~~----~~ylDL~~~~~~~~~--~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~ 277 (383)
T COG0075 204 VAVSERALEAIEERKHP----SFYLDLKKWLKYMEK--KGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEAL 277 (383)
T ss_pred eEECHHHHHHHhcCCCC----ceeecHHHHHHHHhh--cCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999998877644222 122232333322211 156778999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHH-HHHhhCCCeeccCCCCCchHHHhhcC
Q 010538 366 RKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVE-KLASLSGIQLRTGCFCNPGACAKYLG 444 (508)
Q Consensus 366 ~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~-~~L~~~gI~v~~g~~~~~~~~~~~~~ 444 (508)
++.++++ |++++.++.. +...++++.++..- +..++. ..++++|+.+..|..
T Consensus 278 r~~~~al-------Gl~~~~~~~~-----~s~tvta~~~P~g~----~~~~~~~~~~~~~g~~i~gg~~----------- 330 (383)
T COG0075 278 RAGLEAL-------GLELFADPER-----RSPTVTAIKVPEGV----DDKKVRRALLKEYGVEIAGGQG----------- 330 (383)
T ss_pred HHHHHHc-------CCccccCccc-----CCCceEEEECCCCC----CcHHHHHHHHHhCCEEeccccc-----------
Confidence 9999998 7999884432 33567777776532 212233 455667999988742
Q ss_pred CChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhhh
Q 010538 445 LSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQF 504 (508)
Q Consensus 445 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~~ 504 (508)
...+.++||+...+-+.+++..++.++.+.++.+..
T Consensus 331 ------------------------~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~g~ 366 (383)
T COG0075 331 ------------------------PLKGKIFRIGHMGNVRPEDVLAALAALEAALRELGV 366 (383)
T ss_pred ------------------------ccCccEEEEecCccCCHHHHHHHHHHHHHHHHHcCC
Confidence 224678999988899999999999999998877654
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-31 Score=250.26 Aligned_cols=379 Identities=16% Similarity=0.127 Sum_probs=290.9
Q ss_pred chHHHHHHhhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCC--CccchhhhhhHHHHHHHHHHHHHcCCCCC
Q 010538 25 SIDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPH--SQSDISLATCDIVRAAREQVLDYFNASMK 102 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~r~~la~~~~~~~~ 102 (508)
.+..+|+ .|... ++.||||.++.+..|+.+..+.++...++ |+.-. +.......+.++-+.+-.++|-++|+.+.
T Consensus 18 pl~~lr~-~f~lp-~~viyLdgnSLGa~p~~~~a~~~q~a~de-W~~~lirsw~~a~~~W~~lp~~lgdklApLiGA~~~ 94 (407)
T COG3844 18 PLAKLRD-RFALP-GGVIYLDGNSLGARPRAVTARLQQVATDE-WGEGLIRSWNKAKADWFDLPERLGDKLAPLIGARAG 94 (407)
T ss_pred chhhhHh-hccCC-CCeEEeeccccccCchHHHHHHHHHHHHH-HHhhhhhhhcccCCchhhchhHHHHHhhhhhcCCCC
Confidence 5678998 99887 89999999999998877766665544433 22211 22212234567888899999999999999
Q ss_pred CceEEEcCChHHHHHHH-HhhcCCCCCCeEEEe-cccccchHHHHHH-HHhcCCeEEEEccCCccCcccccccccccccc
Q 010538 103 DYKCIFTSGATAALKLV-GEAFPWSHQSSYMYT-MENHNSVLGIREY-ALSQGAAAFAIDVEEAVDNDGLSESLVTSTKI 179 (508)
Q Consensus 103 ~~~i~~t~g~t~al~~~-~~~l~~~~g~~vl~~-~~~h~s~~~~~~~-~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~ 179 (508)
+++++.+++..++-+ ..++..+.|..||++ ..++|+-..+.+- +.-.| +..+-.+.+
T Consensus 95 --Evvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~-----~~~~~~~~~------------- 154 (407)
T COG3844 95 --EVVVTDTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLG-----IGYDLEGVI------------- 154 (407)
T ss_pred --ceEEeCCcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhc-----ccccceeee-------------
Confidence 899999988777654 455555556666666 5667775554432 22122 112212222
Q ss_pred ccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCC
Q 010538 180 SLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPP 259 (508)
Q Consensus 180 ~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~ 259 (508)
.|.+++ ++ .++++.+|++++++..||..+|+.+|..++|+ +|+++++|-+|+.|..|+
T Consensus 155 --~P~~~~--~~------~~dd~AvV~L~~V~y~TGql~dm~aiT~~AH~------------~galv~wDLAHsaGavp~ 212 (407)
T COG3844 155 --APRALE--EA------ITDDVAVVLLSHVNYKTGQLLDMRAITALAHQ------------HGALVGWDLAHSAGAVPV 212 (407)
T ss_pred --ChHHHH--Hh------hccceEEEEeccccccccceeeHHHHHHHHHh------------cCceEEeehhcccCCcce
Confidence 366777 33 47889999999999999999999999999998 999999999999999999
Q ss_pred CCCCCCCcEEEEeccccc-cCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHH
Q 010538 260 DLSKYPVDFVVMSFYKIF-GYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIAS 338 (508)
Q Consensus 260 d~~~~~~D~~~~S~~K~~-g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~ 338 (508)
++...++||.+.++||.+ |||++.+++|+.++..+...|...||.....-+ .+.-....-+...+|..||+++.++++
T Consensus 213 ~Lh~~gaDfaigcsyKYLNgGPGapa~l~v~~~h~e~~~~~lsgW~gha~pf-~m~~~y~p~~ga~rf~~gt~~V~s~aa 291 (407)
T COG3844 213 DLHAAGADFAIGCSYKYLNGGPGAPAGLFVAPRHRERSWPPLSGWWGHARPF-AMEEVYAPGPGARRFLCGTQPVLSLAA 291 (407)
T ss_pred eecccCCCeeeeeeceeccCCCCCceeEEeccccccccccccccccCCCCcc-hhhhccCcCccccceeeCCcchhhhHH
Confidence 999999999999999954 468779999999999888778877774311100 000001123467889999999999999
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHH
Q 010538 339 IRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVE 418 (508)
Q Consensus 339 l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~ 418 (508)
+..+|+...+.++.+++++...|++++.+.++.... --++++.+|... .+|+..|++.+++. ..+.
T Consensus 292 l~~aLDifa~~~i~~lR~kSlaLTd~fieLvEa~~~---~~~l~l~tPr~~----~~rGsqvS~~hp~~-------~~V~ 357 (407)
T COG3844 292 LEGALDIFADVDITELRKKSLALTDYFIELVEARCE---YYGLTLVTPRAH----EERGSQVSLYHPHG-------YQVM 357 (407)
T ss_pred HhhhhhhhhhcCHHHHHHhhhHHHHHHHHHHHhccc---cCCcEEeccchh----hhccceeeEecCcH-------HHHH
Confidence 999999999999999999999999999999987631 016888888765 57899999999864 2489
Q ss_pred HHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecC-CCCCHHHHHHHHHhhhh
Q 010538 419 KLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFG-YMSTFEDAKVNRCSSFD 497 (508)
Q Consensus 419 ~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~-~~~t~eev~~l~~~~~~ 497 (508)
+.|.++||+... +.++.+|+.|. +|++.+||-..++.|.+
T Consensus 358 qaLi~rGVigD~---------------------------------------R~P~vlRfgftPlY~~~~DVw~AV~~L~e 398 (407)
T COG3844 358 QALIDRGVIGDF---------------------------------------REPDVLRFGFTPLYVSFVDVWDAVDALEE 398 (407)
T ss_pred HHHHHcCccccc---------------------------------------cCCCeeeecCccceechhHHHHHHHHHHH
Confidence 999999999533 24789999999 88999999999999999
Q ss_pred hhhhh
Q 010538 498 FVNFS 502 (508)
Q Consensus 498 ~~~~~ 502 (508)
.++..
T Consensus 399 vL~t~ 403 (407)
T COG3844 399 VLDTL 403 (407)
T ss_pred HHHhh
Confidence 88654
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-30 Score=265.59 Aligned_cols=345 Identities=17% Similarity=0.132 Sum_probs=242.4
Q ss_pred eeeCCCCCCCCHHHHHHHHHHhhccccCCCCC----ccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEc-CChHHHHH
Q 010538 43 YLDHAGATLYSELQMEAIFRDFTTNVYGNPHS----QSDISLATCDIVRAAREQVLDYFNASMKDYKCIFT-SGATAALK 117 (508)
Q Consensus 43 yld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t-~g~t~al~ 117 (508)
+|=+++.+.+|+.|++++...+. ++. +.+. ....+....++++++++.+++++|++.+ |+++++ +++|.|+.
T Consensus 5 ~l~~pGP~~~p~~V~~a~~~~~~-~~~-~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~-~~v~~~~gsgt~~~E 81 (360)
T PRK05355 5 YNFSAGPAMLPEEVLEQAQQELL-DWN-GSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDN-YKVLFLQGGASLQFA 81 (360)
T ss_pred eeccCCCCCCCHHHHHHHHHHhh-ccc-cCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCchHHHH
Confidence 34457788889999999876542 211 2221 1223344568999999999999998432 367666 67777899
Q ss_pred HHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC-ccCccccccccccccccccchhhhhcCCCCCCCC
Q 010538 118 LVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE-AVDNDGLSESLVTSTKISLLPIQRRKGASFPERD 196 (508)
Q Consensus 118 ~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~ 196 (508)
.++..+ ..+|+.+++......+ ..|.+.+++.|.. ..+..+. .+..+ ..++++ ..+
T Consensus 82 a~~~nl-~~~g~~~l~i~~G~fg-~r~~~~a~~~g~~-~~~~~~~~~g~~~---------------~~~~~~-~~l---- 138 (360)
T PRK05355 82 MVPMNL-LGGGKKADYVDTGSWS-KKAIKEAKKYGEV-NVAASSEDDGFTY---------------IPPLDE-WQL---- 138 (360)
T ss_pred HHHHhc-CCCCCeEEEEECCHHH-HHHHHHHHHhCCc-eEEecccccCCCC---------------CCChhh-ccC----
Confidence 998888 4555555444322111 2457778888865 5555442 33321 222230 133
Q ss_pred CCCCCceEEEEeCCCCCCcccc-CHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccc
Q 010538 197 PAGDAYNLFAFPSECNFSGSRF-NLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYK 275 (508)
Q Consensus 197 ~~~~~t~lv~~~~~~n~tG~~~-~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K 275 (508)
++++++|+++|+.|.||... |+++| +|++++||++|++|+.|+|+.++ |++++|+||
T Consensus 139 --~~~~~~V~~th~eTstGv~~~~i~~i------------------~g~l~vVDavss~g~~~idv~~~--d~~~~ssqK 196 (360)
T PRK05355 139 --SDDAAYVHYTSNETIDGTEFHELPDT------------------GDVPLVADMSSDILSRPIDVSKF--GLIYAGAQK 196 (360)
T ss_pred --CCCCCEEEEccCCCcceEecCccccc------------------CCCcEEEEcCccccCccCCHHHc--cEEEEeccc
Confidence 34689999999999999999 55544 48999999999999999999985 699999999
Q ss_pred cccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhc-ChHHH
Q 010538 276 IFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSL-TVPAI 354 (508)
Q Consensus 276 ~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~i 354 (508)
++| |+|+|++++++++++++.|.. ++ ..++... .......+|||+..++++.++++++.+. |++.+
T Consensus 197 ~lg-P~Glg~l~~s~~~l~~~~~~~-~~--------~~~~~~~---~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i 263 (360)
T PRK05355 197 NIG-PAGLTIVIVREDLLGRALPSI-PS--------MLDYKTH---ADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAM 263 (360)
T ss_pred ccc-CCceEEEEECHHHHhhcccCC-Ch--------HHHHHHH---HhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHH
Confidence 998 999999999999998877641 11 1111111 0122345899999999999999999999 89999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCC
Q 010538 355 CRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFC 434 (508)
Q Consensus 355 ~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~ 434 (508)
.+|.+++++++++.|++++ .+..+.++.. +...+++|.+++. ....++.+.+.++|+.+..|..
T Consensus 264 ~~r~~~l~~~l~~~l~~~~------~~~~~~~~~~-----rs~~v~sf~~~~~----~~~~~~~~~~~~~Gi~~~~~~~- 327 (360)
T PRK05355 264 EKRNQEKAALLYDAIDSSD------FYRNPVAPED-----RSRMNVPFTLADE----ELDKKFLAEAKAAGLVGLKGHR- 327 (360)
T ss_pred HHHHHHHHHHHHHHHHhCC------CcccCCChhh-----cCCcEEEEEcCCh----HHHHHHHHHHHHCCCcccCCCC-
Confidence 9999999999999999982 2223222211 2247799998764 1112344566667877544321
Q ss_pred CchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 435 NPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 435 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
..+.+|+|+++|||.+||++|++.|++++.
T Consensus 328 ------------------------------------~~g~vRiS~~~~nt~eei~~l~~~l~~~~~ 357 (360)
T PRK05355 328 ------------------------------------SVGGMRASIYNAMPLEGVQALVDFMKEFER 357 (360)
T ss_pred ------------------------------------ccCcEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 147899999999999999999999998654
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-30 Score=267.13 Aligned_cols=332 Identities=15% Similarity=0.014 Sum_probs=248.4
Q ss_pred eeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhh
Q 010538 43 YLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEA 122 (508)
Q Consensus 43 yld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~ 122 (508)
+|++.. ++++|.+++++.+ +.....+++.. + . ......+++++++++++|+++. .+++++|+|+++..++.+
T Consensus 24 ~~~~~~-~~~~~~~~~a~~~-~~~~~~~~~~~-~-~--~~~~~~~~~~~~la~~~g~~~~--~~~~~~ggt~a~~~a~~~ 95 (371)
T PRK13520 24 ILSSMC-TEPHPIARKAHEM-FLETNLGDPGL-F-P--GTAKLEEEAVEMLGELLHLPDA--YGYITSGGTEANIQAVRA 95 (371)
T ss_pred eeeeee-cCchHHHHHHHHH-HHhcCCCCccc-C-c--cHHHHHHHHHHHHHHHhCCCCC--CeEEecCcHHHHHHHHHH
Confidence 577654 4457777777755 43333344432 2 1 2456678899999999999876 789999999999888766
Q ss_pred cC---CCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCC
Q 010538 123 FP---WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAG 199 (508)
Q Consensus 123 l~---~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~ 199 (508)
+. .+++++|++++.+|+++. +.++..|++++.+|.++++.+ |+++++ +++ +
T Consensus 96 ~~~~~~~~~~~vl~~~~~h~s~~---~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~--~~i------~ 149 (371)
T PRK13520 96 ARNLAKAEKPNIVVPESAHFSFD---KAADMLGVELRRAPLDDDYRV---------------DVKAVE--DLI------D 149 (371)
T ss_pred HHhhccCCCceEEecCcchHHHH---HHHHHcCceEEEecCCCCCcC---------------CHHHHH--HHH------h
Confidence 52 235789999998888754 444556999999998766555 688888 555 3
Q ss_pred CCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCC-------CCCCCCCCcEEEEe
Q 010538 200 DAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQP-------PDLSKYPVDFVVMS 272 (508)
Q Consensus 200 ~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~-------~d~~~~~~D~~~~S 272 (508)
+++++|++++++|+||.+.|+++|.++|++ +|+++++|++|+.+..+ +++...++|++++|
T Consensus 150 ~~~~~vi~~~~~~~tG~~~~l~~I~~l~~~------------~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s 217 (371)
T PRK13520 150 DNTIGIVGIAGTTELGQVDPIPELSKIALE------------NGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITID 217 (371)
T ss_pred hCCEEEEEEcCCcCCcccCCHHHHHHHHHH------------cCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEEC
Confidence 457778888889999999999999999998 89999999999865432 44555689999999
Q ss_pred ccccccCCCcceEEEEech-hHhhhc---cccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHh
Q 010538 273 FYKIFGYPTGLGALIMRND-AAKLLK---NTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINS 348 (508)
Q Consensus 273 ~~K~~g~P~G~G~l~~~~~-~~~~l~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~ 348 (508)
+|||.++|.++|+++++++ .++.+. |.+.+. .+....||++...++++.++++.+.+
T Consensus 218 ~~K~~~a~~~~G~~~~~~~~~~~~l~~~~~~~~~~-------------------~~~~~~gt~~~~~~~~~~~al~~l~~ 278 (371)
T PRK13520 218 PHKMGLAPIPAGGILFRDESYLDALAVDTPYLTSK-------------------KQATLTGTRSGAGVAATYAVMKYLGR 278 (371)
T ss_pred CccccCccCCceEEEEcCHHHHHhhcccCccccCC-------------------CCcceEeeccChHHHHHHHHHhhhcH
Confidence 9998765767888887554 554443 111110 11123577777788899999998877
Q ss_pred cChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCee
Q 010538 349 LTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQL 428 (508)
Q Consensus 349 ~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v 428 (508)
.|++++.++..++++++.+.|+++ +++++.++. .+++++.+++ ..++.+.|.++||.+
T Consensus 279 ~g~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~--------~~~v~~~~~~-------~~~v~~~L~~~gi~v 336 (371)
T PRK13520 279 EGYRKVVERCMENTRWLAEELKER-------GFEPVIEPV--------LNIVAFDDPN-------PDEVREKLRERGWRV 336 (371)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhC-------CCEEecCCC--------ceEEEEecCC-------HHHHHHHHHHCCcee
Confidence 888999999999999999999886 576433322 5788888752 235888898899998
Q ss_pred ccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 429 RTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 429 ~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
+.+. ..+++|+|++.++|++||+++++.|++++
T Consensus 337 ~~~~--------------------------------------~~~~iRis~~~~~t~edi~~~~~~l~~~~ 369 (371)
T PRK13520 337 SVTR--------------------------------------CPEALRIVCMPHVTREHIENFLEDLKEVK 369 (371)
T ss_pred ccCC--------------------------------------CCCEEEEEEECCCCHHHHHHHHHHHHHHh
Confidence 7631 14679999999999999999999998765
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.6e-30 Score=264.89 Aligned_cols=354 Identities=13% Similarity=0.040 Sum_probs=252.5
Q ss_pred CCCeeeeC-CCCCCCCHHHHHHHHHHhhccccCCCCC-ccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHH
Q 010538 39 NGTVYLDH-AGATLYSELQMEAIFRDFTTNVYGNPHS-QSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAAL 116 (508)
Q Consensus 39 ~~~iyld~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al 116 (508)
+..|.||- ...+|+++.+++++.+.. ..+++|.+ .+..+.......+++++.+|+++|++ .+++++|+|+|+
T Consensus 18 ~~~~~~~~~~~~~p~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~----~~~~~~g~t~a~ 91 (387)
T PRK09331 18 EEFINLDPIQRGGILTPEARKALIEYG--DGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGMD----EARVTHGAREGK 91 (387)
T ss_pred ccccccChhhcCCCCCHHHHHHHHHHH--hccCCCcccccccccccChHHHHHHHHHHHHhCCC----cEEEeCCHHHHH
Confidence 44455554 347888999988876643 34456644 33334444567899999999999995 367899999999
Q ss_pred HHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEcc--CCccCccccccccccccccccchhhhhcCCCCCC
Q 010538 117 KLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDV--EEAVDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 117 ~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~--~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
.+++.++ .++|++|+++..+|++.... ++..|++++.+|. +..+.+ |+++++ +++++
T Consensus 92 ~~al~~l-~~~gd~Vlv~~~~h~s~~~~---~~~~G~~~~~v~~~~~~~~~~---------------d~~~l~--~~l~~ 150 (387)
T PRK09331 92 FAVMHSL-CKKGDYVVLDGLAHYTSYVA---AERAGLNVREVPKTGYPEYKI---------------TPEAYA--EKIEE 150 (387)
T ss_pred HHHHHHh-cCCCCEEEECCCchHHHHHH---HHHcCCEEEEEeCccCcCCCc---------------CHHHHH--HHHHH
Confidence 9999998 68899999999999887654 4557999999998 444444 678887 66532
Q ss_pred C-CCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEec
Q 010538 195 R-DPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSF 273 (508)
Q Consensus 195 ~-~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~ 273 (508)
. ....+++++|++++++|+||.+.|+++|.++|++ +|+++++|++|+.|..|++...+++|++++|+
T Consensus 151 ~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~~la~~------------~g~~livD~a~~~g~~~~~~~~~g~D~~~~s~ 218 (387)
T PRK09331 151 VKEETGKPPALALLTHVDGNYGNLADAKKVAKVAHE------------YGIPFLLNGAYTVGRMPVDGKKLGADFIVGSG 218 (387)
T ss_pred hhhccCCCCEEEEEECCCCCCcccccHHHHHHHHHH------------cCCEEEEECCcccCCcCCCHHHcCCCEEEeeC
Confidence 1 0112578999999999999999999999999998 89999999999999999999999999999999
Q ss_pred cccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHH
Q 010538 274 YKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPA 353 (508)
Q Consensus 274 ~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~ 353 (508)
||++++|.|+|++++++++++.+.....+... . ...+..++......+++.++++.+.+. . .
T Consensus 219 ~K~l~~~~~~G~l~~~~~~i~~~~~~~~~~~~---------------~-~~~~~~~~~~~~~~~~~~aal~~~~~~-~-~ 280 (387)
T PRK09331 219 HKSMAASAPSGVLATTEEYADKVFRTSRKFGV---------------K-EVELLGCTLRGAPLVTLMASFPHVVER-V-K 280 (387)
T ss_pred cccccCCCCEEEEEECHHHHhhcccccCCCcc---------------c-ceeeeceecCchHHHHHHHHHHHHHHH-H-H
Confidence 99998788899999999887765443111000 0 000112233334455555666654432 2 3
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCC----CCCccCHHHHHHHHhhCCCeec
Q 010538 354 ICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRP----DGSWFGYREVEKLASLSGIQLR 429 (508)
Q Consensus 354 i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~l~~~L~~~gI~v~ 429 (508)
..++..++++++++.|+++ +|++++.+... ..+++.+..+.. .........+.+.|.++||..-
T Consensus 281 ~~~~~~~~~~~l~~~L~~l------~g~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~ 348 (387)
T PRK09331 281 RWDEEVKKARWFVDELEKI------EGFKQLGEKPR------NHDLMKFETPSFDEIAKKHKRRGFFLYEELKKRGIHGI 348 (387)
T ss_pred HHHHHHHHHHHHHHHHhcC------CCEEEeccCcC------cCCeEEEeCCchhHHhhhccccchhHHHHHHHcCceEE
Confidence 4566678889999999998 47998864221 267777775532 1111122347888989999832
Q ss_pred -cCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 430 -TGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 430 -~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
.| ....+|++. ..+|.+|+++++++|+++.+.
T Consensus 349 ~~~---------------------------------------~~~i~ri~~-~g~t~~di~~l~~aL~~i~~~ 381 (387)
T PRK09331 349 KPG---------------------------------------ATKEFKLST-YGLTWEQVEYVADAFKEIAEK 381 (387)
T ss_pred ccC---------------------------------------CceEEEEEe-ccCCHHHHHHHHHHHHHHHHh
Confidence 11 134455555 448999999999999988654
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-30 Score=262.92 Aligned_cols=336 Identities=14% Similarity=0.055 Sum_probs=261.7
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKL 118 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~ 118 (508)
....|+.|.......+.+++++.. +..+.++||.+.+..+..+.++.+++++++++++|++++++..+||+|+|+|+++
T Consensus 22 ~~~~~~gy~~~~~~~~~~~~~~~~-~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~ 100 (374)
T PLN03032 22 KSSVHFGYPYNLDFDYGELSQLMK-YSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLH 100 (374)
T ss_pred hhhhccCCCchhccChHHHHHHHH-hcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHH
Confidence 456788888877778788888766 5556689999887778888999999999999999999872224999999999998
Q ss_pred HHhhcC-CCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCC
Q 010538 119 VGEAFP-WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP 197 (508)
Q Consensus 119 ~~~~l~-~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~ 197 (508)
++.+.. ..++.+|+++..+|+|+....+.+ |.+++.||++.++.+ |+++++ ++|+++
T Consensus 101 al~~ar~~~~~~~vi~s~~~H~Sv~kaa~~l---g~~~~~V~~d~~g~i---------------d~~~L~--~~i~~~-- 158 (374)
T PLN03032 101 GILVGREVFPDGILYASRESHYSVFKAARMY---RMEAVKVPTLPSGEI---------------DYDDLE--RALAKN-- 158 (374)
T ss_pred HHHHHHHhCCCcEEEeCCCceeHHHHHHHHc---CCCCeEeeeCCCCcC---------------cHHHHH--HHHHHc--
Confidence 776542 123468999999999998776654 778889999888887 688998 777432
Q ss_pred CCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCC-----eEEEEeccccCCCCCC-------CCCCCC
Q 010538 198 AGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGR-----WMVLIDAAKGCVTQPP-------DLSKYP 265 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g-----~~vivD~a~~~g~~~~-------d~~~~~ 265 (508)
..+|.+|++++++|++|.+.|+++|.++|++ +| ++++||++++.+..|+ ++. .+
T Consensus 159 -~~~~~lvv~tagtt~tG~idpi~eI~~i~~~------------~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~-~~ 224 (374)
T PLN03032 159 -RDKPAILNVNIGTTVKGAVDDLDRILRILKE------------LGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFR-KP 224 (374)
T ss_pred -CCCCEEEEEEecCcCCccCCCHHHHHHHHHH------------hCCCCCCeeEEEEccchhhhhhccCCCcccCCC-cC
Confidence 2367899999999999999999999999997 64 6999999999988875 554 36
Q ss_pred CcEEEEeccccccCCCcceEEEEechhHhhhcc--ccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHH
Q 010538 266 VDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKN--TYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGF 343 (508)
Q Consensus 266 ~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al 343 (508)
+|.+++|+||+++.|.|+|+++++++.++.+.. .+... ......|+.+....+.++.++
T Consensus 225 vDSis~s~HK~~g~P~g~G~ll~r~~~~~~~~~~~~Yl~~-------------------~d~ti~gSR~g~~~l~~w~~l 285 (374)
T PLN03032 225 IGSVSVSGHKFLGCPMPCGVALTRKKHVKALSQNVEYLNS-------------------RDATIMGSRNGHAPLYLWYTL 285 (374)
T ss_pred CcEEEECcccccCCCcCeEEEEEEchhhHhhccCCcccCC-------------------CCCcccCCCchHHHHHHHHHH
Confidence 999999999988889999999999877654421 11110 111234677766778888899
Q ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhh
Q 010538 344 NLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASL 423 (508)
Q Consensus 344 ~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~ 423 (508)
+.+...|+.++.+++.++++++.+.|++. +++++..+. .++|.|+-+..+ .+.
T Consensus 286 ~~~G~~g~~~~~~~~~~~a~~l~~~l~~~-------~~~~~~~p~--------~~~V~f~~~~~~-----------~~~- 338 (374)
T PLN03032 286 RRKGYRGIKRDVQHCMRNAHYLKDRLTEA-------GLTCRLNEL--------SSTVVFERPMDE-----------AFI- 338 (374)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHHHhC-------CCcEEECCC--------ceEEEEcCCCcH-----------hHh-
Confidence 98888899999999999999999999886 566665543 677877765311 122
Q ss_pred CCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhh
Q 010538 424 SGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFD 497 (508)
Q Consensus 424 ~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~ 497 (508)
+|..+.+ ..+.+|+.+....|.+.+|.|++-|++
T Consensus 339 ~~w~l~~----------------------------------------~~~~~hi~vm~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 339 KKWQLAC----------------------------------------EGDIAHVVVMPNVTVEKLDEFVEELVE 372 (374)
T ss_pred heeeecc----------------------------------------cCCEEEEEECCCCCHHHHHHHHHHHhc
Confidence 4555442 135899999999999999999887764
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=261.50 Aligned_cols=333 Identities=16% Similarity=0.018 Sum_probs=240.4
Q ss_pred eeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhh
Q 010538 43 YLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEA 122 (508)
Q Consensus 43 yld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~ 122 (508)
+|++....+ .+.+.+++.. +.....+++. .+ .+ .....+++++++|+++|++++ ++++++|+++++..++.+
T Consensus 24 ~~~~~~~~~-~~~~~~a~~~-~~~~~~~~~~-~~-~~--~~~~~~~~~~~la~~~g~~~~--~~~~~~g~~~~~~~~~~~ 95 (373)
T TIGR03812 24 ILGSMCTNP-HPIAVKAYDM-FIETNLGDPG-LF-PG--TKKIEEEVVGSLGNLLHLPDA--YGYIVSGGTEANIQAVRA 95 (373)
T ss_pred EEEEEeCCc-hHHHHHHHHH-HhhcCCCCcc-cC-cc--HHHHHHHHHHHHHHHhCCCCC--CeEEeccHHHHHHHHHHH
Confidence 566665553 5556666544 4333344443 12 22 346678899999999999877 788899999998877665
Q ss_pred cCC-----CCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCC
Q 010538 123 FPW-----SHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP 197 (508)
Q Consensus 123 l~~-----~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~ 197 (508)
+.. .+|++|+++..+|+++. ..++..|++++.++.+.++.+ |+++++ +++
T Consensus 96 ~~~~~~~~~~g~~vl~~~~~h~~~~---~~~~~~G~~~~~v~~~~~~~~---------------d~~~l~--~~l----- 150 (373)
T TIGR03812 96 AKNLAREEKRTPNIIVPESAHFSFE---KAAEMLGLELRYAPLDEDYTV---------------DVKDVE--DLI----- 150 (373)
T ss_pred HHHHHhccCCCcEEEECCcchHHHH---HHHHHcCCeEEEEeeCCCCCc---------------CHHHHH--HHH-----
Confidence 421 35689999998887754 345567999999998765555 578888 555
Q ss_pred CCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC----------CCCCCCCCCc
Q 010538 198 AGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ----------PPDLSKYPVD 267 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~----------~~d~~~~~~D 267 (508)
.+++..+++.+++|+||.+.|+++|.++|++ +|+++++|++|+.+.. ++|+...++|
T Consensus 151 -~~~~~~vv~~~~~~~tG~~~~~~~i~~l~~~------------~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d 217 (373)
T TIGR03812 151 -DDNTIGIVGIAGTTELGQIDDIEELSKIALE------------NGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQ 217 (373)
T ss_pred -hhCcEEEEEECCCCCCCccCCHHHHHHHHHH------------cCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCC
Confidence 3344434444478999999999999999998 8999999999975432 4566656899
Q ss_pred EEEEeccccccCCCcceEEEE-echhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHH
Q 010538 268 FVVMSFYKIFGYPTGLGALIM-RNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLI 346 (508)
Q Consensus 268 ~~~~S~~K~~g~P~G~G~l~~-~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~ 346 (508)
++++|+|||..+|.++|++++ +++.++.+... ..+.. ........||++...++++.++++++
T Consensus 218 ~~~~s~~K~~~~~~~~G~~~~~~~~~~~~l~~~-~~~~~---------------~~~~~~~~gt~~~~~~~~~~~~l~~l 281 (373)
T TIGR03812 218 SITIDPHKMGLSPIPAGGILFRSKSYLKYLSVD-APYLT---------------VKKQATITGTRSGASAAATYAVIKYL 281 (373)
T ss_pred EEEECccccCCCcCCceEEEEeCHHHHhhhccc-CcccC---------------CCCCcceEeechhHHHHHHHHHHHHh
Confidence 999999997554767776664 56665554311 00000 00111234788888899999999998
Q ss_pred HhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCC
Q 010538 347 NSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGI 426 (508)
Q Consensus 347 ~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI 426 (508)
.+.|++++.+++.+++++|++.|+++ ++..+.++. .++++|.+++. ..+.+.|.++||
T Consensus 282 ~~~g~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~--------~~~v~~~~~~~-------~~v~~~L~~~gi 339 (373)
T TIGR03812 282 GREGYRKIVAECMENTRYLVEELKKI-------GFEPVIEPV--------LNIVAFEVDDP-------EEVRKKLRDRGW 339 (373)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhC-------CCeEEcCCC--------ceEEEEEeCCH-------HHHHHHHHHCCc
Confidence 88889999999999999999999987 343332222 68888887642 248888999999
Q ss_pred eeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhh
Q 010538 427 QLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFD 497 (508)
Q Consensus 427 ~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~ 497 (508)
.++.+. .++++|+|++.++|.+|++++++.|++
T Consensus 340 ~v~~~~--------------------------------------~~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 340 YVSVTR--------------------------------------CPKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred eeccCC--------------------------------------CCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 987631 146899999999999999999999875
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-29 Score=260.16 Aligned_cols=362 Identities=11% Similarity=0.022 Sum_probs=247.2
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccch--hhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDI--SLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAAL 116 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al 116 (508)
.+.++|..+..+..+|.++++...+. .. . +....+.. .....++.+++++++++++|++.+ +++++++++.+.
T Consensus 20 ~~~~~l~~g~~~~~~p~~~~~~~~~~-~~-~-~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~--~v~~~~~g~~~~ 94 (398)
T cd00613 20 QSMSFLGSGTYKHNPPAVIKRNILEN-EF-Y-TAYTPYQPEISQGRLQALFELQTMLCELTGMDVA--NASLQDEATAAA 94 (398)
T ss_pred cCcccccccccCCcCcHHHHHHhccc-cC-c-ccCCCCChhhhhhHHHHHHHHHHHHHHHHCCCcc--ceeccCchHHHH
Confidence 56689999999988888888765543 11 0 11111111 234567888999999999999876 677777666544
Q ss_pred H-HHHhhcCCCC--CCeEEEecccccchHHHHHHH-HhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCC
Q 010538 117 K-LVGEAFPWSH--QSSYMYTMENHNSVLGIREYA-LSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASF 192 (508)
Q Consensus 117 ~-~~~~~l~~~~--g~~vl~~~~~h~s~~~~~~~~-~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l 192 (508)
+ .+..++ ..+ |++|+++...|+++...+..+ +..|++++.+|.+....+ |+++++ +++
T Consensus 95 ~~~~~~~~-~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~--~~i 156 (398)
T cd00613 95 EAAGLAAI-RAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTV---------------DLEALK--EEV 156 (398)
T ss_pred HHHHHHHH-hcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEeccCCCCCc---------------CHHHHH--Hhc
Confidence 4 444443 444 899999999999988776655 345689999988654444 678888 544
Q ss_pred CCCCCCCCCceEEEEeCCCCCCccccCH-HHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEE
Q 010538 193 PERDPAGDAYNLFAFPSECNFSGSRFNL-DLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVM 271 (508)
Q Consensus 193 ~~~~~~~~~t~lv~~~~~~n~tG~~~~i-~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~ 271 (508)
+++|++|++++++ ++|.+.|. ++|.++|++ +|+++|+|++|+.+..+.+...+++|++++
T Consensus 157 ------~~~t~~viv~~~~-~~G~~~~~l~~i~~la~~------------~g~~livD~~~~~~~~~~~~~~~~~d~~~~ 217 (398)
T cd00613 157 ------SEEVAALMVQYPN-TLGVFEDLIKEIADIAHS------------AGALVYVDGDNLNLTGLKPPGEYGADIVVG 217 (398)
T ss_pred ------CCCeEEEEEECCC-CCceecchHHHHHHHHHh------------cCCEEEEEeccccccCCCChHHcCCCEEEe
Confidence 5678999999975 89999996 999999998 999999999998777777777789999999
Q ss_pred eccccccCC-----CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChh-----HHHHHHH
Q 010538 272 SFYKIFGYP-----TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFL-----SIASIRH 341 (508)
Q Consensus 272 S~~K~~g~P-----~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~-----~~~~l~~ 341 (508)
|+|||++ | .|.|++++++++++.+.+...+|...........+.........+++.++.++. .......
T Consensus 218 s~~K~~~-p~g~Ggp~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~ 296 (398)
T cd00613 218 NLQKTGV-PHGGGGPGAGFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAM 296 (398)
T ss_pred eccccCC-CCCCCCCceeEEEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHH
Confidence 9999983 5 247899999988877666554543211000000110000001223445555432 2333344
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHH
Q 010538 342 GFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLA 421 (508)
Q Consensus 342 al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L 421 (508)
+++.+.+.|++++.+++.++++++++.|+++. +.. .+... ..++++|+++...+ .+..++.+.|
T Consensus 297 ~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~------~~~--~~~~~------~~~~v~~~~~~~~~--~~~~~~~~~L 360 (398)
T cd00613 297 YIVYLGPEGLKEIAERAHLNANYLAKRLKEVG------GVL--PFNGP------FFHEFVLRLPPLYG--IRAEDLAKAL 360 (398)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHHhcC------Ccc--cCCCC------eeEEEEEEcCCcch--HHHHHHHHhh
Confidence 55666666889999999999999999999873 222 12111 14566777753201 2334688888
Q ss_pred hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhh
Q 010538 422 SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSS 495 (508)
Q Consensus 422 ~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~ 495 (508)
.++||.+.... + ...+.+|+|++.|||.||||++++.|
T Consensus 361 ~~~gi~~~~~~----~--------------------------------~~~~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 361 IDGGFHAPTMY----L--------------------------------PVDGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred hhcCccccccc----c--------------------------------CCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence 88999754311 0 01578999999999999999998764
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=258.60 Aligned_cols=293 Identities=17% Similarity=0.060 Sum_probs=222.8
Q ss_pred cchhhhhhHHHHHHHHHHHHHcCCC--CCCceEEEcCChHHHHHHHHhhcCCC-----------C--CCeEEEecccccc
Q 010538 76 SDISLATCDIVRAAREQVLDYFNAS--MKDYKCIFTSGATAALKLVGEAFPWS-----------H--QSSYMYTMENHNS 140 (508)
Q Consensus 76 ~~~~~~~~~~~~~~r~~la~~~~~~--~~~~~i~~t~g~t~al~~~~~~l~~~-----------~--g~~vl~~~~~h~s 140 (508)
|..+....++.+++++++++++|++ ++ +++||+|+|+|+.+++.++..+ + +.+|+++...|++
T Consensus 30 y~~~~~~~~le~~~~~~~~~~~g~~~~~~--~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~ 107 (345)
T cd06450 30 WDESPAATEMEAEVVNWLAKLFGLPSEDA--DGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVS 107 (345)
T ss_pred cccCchhHHHHHHHHHHHHHHhCCCCCCC--CEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhH
Confidence 4455556778888999999999996 33 7999999999999988876321 2 3478888989988
Q ss_pred hHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCH
Q 010538 141 VLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNL 220 (508)
Q Consensus 141 ~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i 220 (508)
+...... .|.+++.+|.+.++.+ |+++++ +++.+......++++|++++++|+||.+.|+
T Consensus 108 ~~~~~~~---~g~~~~~v~~~~~~~~---------------d~~~l~--~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~ 167 (345)
T cd06450 108 VEKAAAY---LDVKVRLVPVDEDGRM---------------DPEALE--AAIDEDKAEGLNPIMVVATAGTTDTGAIDPL 167 (345)
T ss_pred HHHHHHH---HhcCeEEeeeCCCCCc---------------CHHHHH--HHHHHHHHCCCCcEEEEEecccCCCCCCCCH
Confidence 7655544 3899999998765555 678888 5553211112367899999999999999999
Q ss_pred HHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCC------CCCcEEEEeccccccCCCcceEEEEechhHh
Q 010538 221 DLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSK------YPVDFVVMSFYKIFGYPTGLGALIMRNDAAK 294 (508)
Q Consensus 221 ~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~------~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~ 294 (508)
++|.++|++ +|+++++|++|+.+..+.+... .++|++++|+||++++|.|+|+++++
T Consensus 168 ~~i~~~~~~------------~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~----- 230 (345)
T cd06450 168 EEIADLAEK------------YDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR----- 230 (345)
T ss_pred HHHHHHHHH------------hCCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHHHHHH-----
Confidence 999999998 8999999999998876654322 37899999999988768888887655
Q ss_pred hhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccC
Q 010538 295 LLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRH 374 (508)
Q Consensus 295 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~ 374 (508)
.+++.++++++...|++++.++..++++++.+.|++++
T Consensus 231 -----------------------------------------~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~- 268 (345)
T cd06450 231 -----------------------------------------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADP- 268 (345)
T ss_pred -----------------------------------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCC-
Confidence 23445567777777899999999999999999999873
Q ss_pred CCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhh
Q 010538 375 ENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNI 454 (508)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~ 454 (508)
+++++.++. .++++|.++......++..++.+.|.++|+.+.++..+.
T Consensus 269 -----~~~~~~~~~--------~~iv~f~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~------------------- 316 (345)
T cd06450 269 -----GFELLGEPN--------LSLVCFRLKPSVKLDELNYDLSDRLNERGGWHVPATTLG------------------- 316 (345)
T ss_pred -----CeEEecCCc--------eeEEEEEECCcchhhHHHHHHHHHHHhcCCEEEEeeEEC-------------------
Confidence 688776543 689999986421011233468888988876655432110
Q ss_pred hcCCccCCCccccCCCCCceEEEecCCC-CCHHHHHHHHHhhhh
Q 010538 455 EAGHVCWDDNDIIHGKPTGAIRVSFGYM-STFEDAKVNRCSSFD 497 (508)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~iRis~~~~-~t~eev~~l~~~~~~ 497 (508)
.++++|+|++.+ +|.+|++++++.|++
T Consensus 317 ----------------~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 317 ----------------GPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred ----------------CeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 257899999987 599999999998865
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-27 Score=246.08 Aligned_cols=344 Identities=13% Similarity=0.023 Sum_probs=243.6
Q ss_pred CCCCCCHHHHHHHHHHhhccccCCCCC-ccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCC
Q 010538 48 GATLYSELQMEAIFRDFTTNVYGNPHS-QSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWS 126 (508)
Q Consensus 48 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~ 126 (508)
..+++.+.+++++.+ +. ..+++|.. ....+........++++.+|+++|+ + ++++|+|+|+++.+++.++ .+
T Consensus 9 ~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~--~--~i~~~~g~t~al~~~l~~~-~~ 81 (361)
T cd06452 9 RGGRLTPEARKALIE-WG-DGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGM--D--EARVTPGAREGKFAVMHSL-CE 81 (361)
T ss_pred cCCCCCHHHHHHHHH-Hh-cccCCccccccccccccCchHHHHHHHHHHHcCC--c--eEEEeCCHHHHHHHHHHHh-cC
Confidence 356778888887754 43 33455543 2222322345688899999999999 4 7999999999999999998 67
Q ss_pred CCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCcc--CccccccccccccccccchhhhhcCCCCCCCC-CCCCCce
Q 010538 127 HQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAV--DNDGLSESLVTSTKISLLPIQRRKGASFPERD-PAGDAYN 203 (508)
Q Consensus 127 ~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~--~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~-~~~~~t~ 203 (508)
+|++|+++...|.+... .++..|++++.+|.+.++ .+ |+++++ +++++.. ...++++
T Consensus 82 ~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~~~---------------d~~~l~--~~l~~~~~~~~~~~~ 141 (361)
T cd06452 82 KGDWVVVDGLAHYTSYV---AAERAGLNVREVPNTGHPEYHI---------------TPEGYA--EVIEEVKDEFGKPPA 141 (361)
T ss_pred CCCEEEEcCCcchHHHH---HHHhcCCEEEEEecCCCCCccc---------------CHHHHH--HHHHHHhhccCCCce
Confidence 89999999887877653 355679999999987543 44 677887 5553210 0014789
Q ss_pred EEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCcc
Q 010538 204 LFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGL 283 (508)
Q Consensus 204 lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G~ 283 (508)
+|++++++|+||...|+++|.++|++ +|+++++|++|+.|..+++..++++|++++|+||++++|.++
T Consensus 142 lv~l~~p~n~tG~~~~~~~i~~~~~~------------~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~~~~~ 209 (361)
T cd06452 142 LALLTHVDGNYGNLHDAKKIAKVCHE------------YGVPLLLNGAYTVGRMPVSGKELGADFIVGSGHKSMAASAPI 209 (361)
T ss_pred EEEEECCCCCCeeeccHHHHHHHHHH------------cCCeEEEECCcccCCcCCCHHHcCCCEEEecCCccccCCCCe
Confidence 99999999999999999999999998 899999999999999888888889999999999988867779
Q ss_pred eEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 010538 284 GALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGM 363 (508)
Q Consensus 284 G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~ 363 (508)
|++++++++++++......+.. . .-....++.....++++.++++.+.+. ++. .++..+.++
T Consensus 210 G~l~~~~~~~~~l~~~~~~~~~-~---------------~~~~~~~~~~~~~~~~~~~al~~~~~~-~~~-~~~~~~~~~ 271 (361)
T cd06452 210 GVLATTEEWADIVFRTSQMFKI-K---------------EVELLGCTLRGAPLVTLMASFPHVKER-VKR-WDEEVEKAR 271 (361)
T ss_pred EEEEECHHHHHHHhcccccccc-c---------------eeeeeccccCchHHHHHHHHHHHHHHH-HHH-HHHHHHHHH
Confidence 9999999888776543211110 0 011223455555566666677654332 333 344455668
Q ss_pred HHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCC----CccCHHHHHHHHhhCCCeeccCCCCCchHH
Q 010538 364 YVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDG----SWFGYREVEKLASLSGIQLRTGCFCNPGAC 439 (508)
Q Consensus 364 ~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~ 439 (508)
++.+.|+++ ++++++.+... ..+++.++.+.... .......+.+.|.++||.+.. .+
T Consensus 272 ~l~~~L~~l------~g~~v~~~~~~------~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~-----~~-- 332 (361)
T cd06452 272 WFVAELEKI------EGIKQLGEKPK------NHDLMFFETPSFDEIAKKHKRRGYFLYSELKKRGIHGIK-----PG-- 332 (361)
T ss_pred HHHHHHhcC------CCeEEECCCCC------CCceEEEEcCCcchhhhhccccchhHHHHHHHcCceEEc-----CC--
Confidence 999999988 47888754321 26788887652100 000112478889889998421 00
Q ss_pred HhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 440 AKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 440 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
..+++|++... .|.+|++.++++|+++.
T Consensus 333 -------------------------------~~~~~ri~~~g-~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 333 -------------------------------LTRYFKLSTYG-LTWEQVEYVVDAFKEIA 360 (361)
T ss_pred -------------------------------CceEEEEEecC-CCHHHHHHHHHHHHHHh
Confidence 14589999933 59999999999998754
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-28 Score=250.30 Aligned_cols=329 Identities=15% Similarity=0.092 Sum_probs=232.0
Q ss_pred CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeE
Q 010538 52 YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSY 131 (508)
Q Consensus 52 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~v 131 (508)
.+|.+++++.+.+....++++.+.+..| ......++++.+|+++|.+ ++++++|+++|++.++.++ +++||+|
T Consensus 53 ~~~~v~~~~~~~~~~~~~~~~~s~~~~G--~~~~~~~le~~ia~~~g~~----~~ii~~~~~~a~~~~~~~l-~~~gd~v 125 (393)
T TIGR01822 53 SHPDLIQAAKDALDEHGFGMSSVRFICG--TQDIHKELEAKIAAFLGTE----DTILYASCFDANGGLFETL-LGAEDAI 125 (393)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcCcccC--ChHHHHHHHHHHHHHhCCC----cEEEECchHHHHHHHHHHh-CCCCCEE
Confidence 3778888877655432245555543333 2566788999999999985 3455578889999999998 7899999
Q ss_pred EEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCC
Q 010538 132 MYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSEC 211 (508)
Q Consensus 132 l~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~ 211 (508)
+++..+|+++...++.+ +.+...++. + |+++++ +++++......+|++|++++++
T Consensus 126 i~~~~~~~s~~~~~~~~---~~~~~~~~~-----~---------------d~~~l~--~~i~~~~~~~~~~~~v~~~~v~ 180 (393)
T TIGR01822 126 ISDALNHASIIDGVRLC---KAKRYRYAN-----N---------------DMADLE--AQLKEARAAGARHRLIATDGVF 180 (393)
T ss_pred EEeccccHHHHHHHHhc---CCceEEeCC-----C---------------CHHHHH--HHHHhhhhcCCCceEEEEeCCc
Confidence 99999999987766543 444433321 2 455666 5543211112378999999999
Q ss_pred CCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCC---------CCCCCCCcEEEEeccccccCCCc
Q 010538 212 NFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPP---------DLSKYPVDFVVMSFYKIFGYPTG 282 (508)
Q Consensus 212 n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~---------d~~~~~~D~~~~S~~K~~g~P~G 282 (508)
|+||.+.|+++|.++|++ +|+++++|++|+.|.... ++. .++|++++|+||+++++.
T Consensus 181 ~~tG~~~~l~~i~~la~~------------~~~~li~De~~~~g~~~~~~~~~~~~~~~~-~~~di~~~s~sK~l~g~r- 246 (393)
T TIGR01822 181 SMDGVIAPLDEICDLADK------------YDALVMVDECHATGFLGPTGRGSHELCGVM-GRVDIITGTLGKALGGAS- 246 (393)
T ss_pred cCCCCcCCHHHHHHHHHH------------cCCEEEEECCccccCcCCCCCchHHhcCCC-CCCeEEEEEChHHhhCCC-
Confidence 999999999999999998 999999999998776432 222 258999999999988665
Q ss_pred ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHH
Q 010538 283 LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLG 362 (508)
Q Consensus 283 ~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~ 362 (508)
.|+++++++.++.+.+... .. ...++.+...++++.++++.+. ..+++++++.+++
T Consensus 247 ~G~~~~~~~~~~~l~~~~~---------------------~~-~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~ 302 (393)
T TIGR01822 247 GGFTTARKEVVELLRQRSR---------------------PY-LFSNSLPPAVVGASIKVLEMLE--ASNELRDRLWANT 302 (393)
T ss_pred cEEEEeCHHHHHHHHHhCc---------------------cc-eecCCCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHH
Confidence 5999999888876654210 00 1124455555666677887764 3678889999999
Q ss_pred HHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhh
Q 010538 363 MYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKY 442 (508)
Q Consensus 363 ~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~ 442 (508)
+++.+.|++. ++++..+. ++++.+.+.+. .+..++.+.|.++||.+. +..+...
T Consensus 303 ~~l~~~L~~~-------g~~~~~~~---------~~~~~i~~~~~----~~~~~l~~~L~~~gI~v~-~~~~~~~----- 356 (393)
T TIGR01822 303 RYFRERMEAA-------GFDIKPAD---------HPIIPVMLYDA----VLAQRFARRLLEEGIYVT-GFFYPVV----- 356 (393)
T ss_pred HHHHHHHHHc-------CCCCCCCC---------CCEEEEEeCCH----HHHHHHHHHHHHCCeeEe-eeCCCCC-----
Confidence 9999999875 46554321 45666665431 122457888888899987 3322110
Q ss_pred cCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 443 LGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 443 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
......+|+|+++++|.+|++++++.|.++.+.+
T Consensus 357 --------------------------~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~~~ 390 (393)
T TIGR01822 357 --------------------------PKGQARIRVQISAAHTEEQLDRAVEAFTRIGREL 390 (393)
T ss_pred --------------------------CCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 0013569999999999999999999999876543
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-27 Score=250.22 Aligned_cols=323 Identities=14% Similarity=0.078 Sum_probs=231.9
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHH-HHhcCCeEEEEcc
Q 010538 82 TCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREY-ALSQGAAAFAIDV 160 (508)
Q Consensus 82 ~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~-~~~~G~~v~~v~~ 160 (508)
..+...+.++++++++|++++ ++++|+|+|+++..++.++...+|++|+++..+|+++...++. +...|++++.+|.
T Consensus 110 ~~~~~~e~~~~la~l~g~~~~--~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~ 187 (447)
T PRK00451 110 TLQAIFEYQTMICELTGMDVA--NASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPY 187 (447)
T ss_pred HHHHHHHHHHHHHHHhCCCcc--eEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecC
Confidence 455566677889999999988 8999999999999998887556789999999999998877664 4557999999998
Q ss_pred CCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCC
Q 010538 161 EEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFS 240 (508)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~ 240 (508)
+.+ .+ |+++++ +++ +++|++|+++++ |+||.+.|+++|.++||+
T Consensus 188 ~~~-~~---------------d~~~l~--~~i------~~~t~~v~l~~p-n~tG~v~~l~~I~~~a~~----------- 231 (447)
T PRK00451 188 EDG-VT---------------DLEALE--AAV------DDDTAAVVVQYP-NFFGVIEDLEEIAEIAHA----------- 231 (447)
T ss_pred CCC-CC---------------CHHHHH--Hhc------CCCeEEEEEECC-CCCCeeCCHHHHHHHHHH-----------
Confidence 765 55 688888 554 567899999998 899999999999999998
Q ss_pred CCCeEEEE--eccccCCCCCCCCCCCCCcEEEEecccc-----ccCCCcceEEEEechhHhhhccccccCceEEecccch
Q 010538 241 KGRWMVLI--DAAKGCVTQPPDLSKYPVDFVVMSFYKI-----FGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADI 313 (508)
Q Consensus 241 ~~g~~viv--D~a~~~g~~~~d~~~~~~D~~~~S~~K~-----~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~ 313 (508)
+|+++++ |.. +.|..+ ...++++|++++|+||| ++|| |+|++++++++++.+.+.+.|+..........
T Consensus 232 -~~~~~iv~~d~~-~~g~~~-~~~~~~~D~~~~s~~k~~~~~~~~Gp-g~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~ 307 (447)
T PRK00451 232 -GGALFIVGVDPV-SLGLLK-PPGEYGADIVVGEGQPLGIPLSFGGP-YLGFFATRKKLVRQMPGRLVGETVDADGKRGF 307 (447)
T ss_pred -CCCEEEEEcChH-HhccCC-CcccCCCCEEEECCCcCCCCCCCCCC-CchHHHhhHHHHhhCCCCEeeeecccCCCeee
Confidence 8999998 544 345443 23567999999999996 6657 79999999999888877766653111100000
Q ss_pred hhhhhccCccccccCCCCChhH---H--HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCC
Q 010538 314 DFVKRRQGVEELFEDGTASFLS---I--ASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYT 388 (508)
Q Consensus 314 ~~~~~~~~~~~~~~~gt~~~~~---~--~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~ 388 (508)
.+.........+++.++.++.. + .+...+++++.+.|++++.+++.++++++++.|+++ ++++++ +..
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~------~g~~~~-~~~ 380 (447)
T PRK00451 308 VLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEI------GGVELF-DGP 380 (447)
T ss_pred EeeccccccccccccccccccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhc------CCEEec-CCC
Confidence 0000001112344555555432 2 223334666667789999999999999999999987 368776 211
Q ss_pred CCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeecc-CCCCCchHHHhhcCCChhhhhhhhhcCCccCCCcccc
Q 010538 389 SEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRT-GCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDII 467 (508)
Q Consensus 389 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~-g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 467 (508)
. ..++.++++ . +..++.+.|.++||.+.. +..+.+
T Consensus 381 ~-------~~~~~v~~~-~-----~~~~~~~~L~~~gi~~~~~~~~~~~------------------------------- 416 (447)
T PRK00451 381 F-------FNEFVVRLP-K-----PAEEVNEALLEKGILGGYDLGRYYP------------------------------- 416 (447)
T ss_pred e-------EEEEEEecC-C-----CHHHHHHHHHhcCCCCCcccccccC-------------------------------
Confidence 0 223334442 1 234588899999888432 111101
Q ss_pred CCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 468 HGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 468 ~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
. ..+++|+|++.++|.+|++++++.|++++
T Consensus 417 -~-~~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 417 -E-LGNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred -C-cCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 0 14689999999999999999999998764
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=239.74 Aligned_cols=309 Identities=14% Similarity=0.023 Sum_probs=220.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA 163 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~ 163 (508)
....+.++.+|+++|+++. .+++|+++++..++.++ .++|+.|+++...|.+.+. .++..|++++.+|.+++
T Consensus 51 ~~~~~~~e~lA~~~g~~~~----~i~~g~~~a~~~~~~~l-~~~gd~Vl~~~~~h~s~~~---~~~~~g~~~~~~~~~~~ 122 (370)
T TIGR02539 51 PPIHDFLEDLAEFLGMDEA----RVTHGAREGKFAVMHAL-CKEGDWVVLDGLAHYTSYV---AAERAGLNVKEVPHTGH 122 (370)
T ss_pred hHHHHHHHHHHHHhCCCce----EEECChHHHHHHHHHHh-hCCCCEEEECCcccHHHHH---HHHHcCCEEEEEecCCc
Confidence 3566788889999999754 56899999999999999 6889999998888877653 34567999999997642
Q ss_pred --cCccccccccccccccccchhhhhcCCCCCCCC-CCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCC
Q 010538 164 --VDNDGLSESLVTSTKISLLPIQRRKGASFPERD-PAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFS 240 (508)
Q Consensus 164 --~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~-~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~ 240 (508)
..+ |+++++ +++.+.. ...+++++|++++++|++|.+.|+++|.++|++
T Consensus 123 ~~~~~---------------d~~~l~--~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~----------- 174 (370)
T TIGR02539 123 PEYKV---------------DPEGYG--EVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCRE----------- 174 (370)
T ss_pred ccCCc---------------CHHHHH--HHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHHHH-----------
Confidence 333 577777 5553210 011367899999999999999999999999998
Q ss_pred CCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhcc
Q 010538 241 KGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQ 320 (508)
Q Consensus 241 ~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~ 320 (508)
+|+++++|++|+.|..+++...+++|+++.|+||+++.+.++|++++++++++.+......+.. .
T Consensus 175 -~~~~livDea~~~g~~~~~~~~~~~di~v~s~sK~~~~~g~~G~l~~~~~~i~~l~~~~~~~~~-~------------- 239 (370)
T TIGR02539 175 -KGVPLLLNCAYTVGRMPVSAKEIGADFIVGSGHKSMAASGPCGVLGMSEEWEDIVLRKSRYSPV-K------------- 239 (370)
T ss_pred -cCCeEEEECccccCCcCCCHHHcCCCEEEeeCcccccCCCCEEEEEECHHHHhhhcccccCCcc-c-------------
Confidence 8999999999999987888777789999999999998444589999999998877654221110 0
Q ss_pred CccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceE
Q 010538 321 GVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMV 400 (508)
Q Consensus 321 ~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 400 (508)
.-.+..++.......++.++++.+.+. ++.. .+..++++++++.|+++ ++++++.... .++++
T Consensus 240 --~~~~~~~~~~~~~~~~~~~al~~~~~~-l~~~-~~~~~~~~~l~~~L~~~-------g~~~~~~~~s------~t~~v 302 (370)
T TIGR02539 240 --EVELLGCTSRGAPIVTMMASFPHVVER-VKRW-DEEVKKTRWFVAELEDI-------GFIQLGQKPK------EHDLV 302 (370)
T ss_pred --eeeeecccccccHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHhC-------CcEEEccCCC------cCceE
Confidence 001122333333455555566643221 3333 33344467999999987 6877643221 27899
Q ss_pred EEEeeCCCC----CccCHHHHHHHHhhCCCe-eccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceE
Q 010538 401 SFNLKRPDG----SWFGYREVEKLASLSGIQ-LRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAI 475 (508)
Q Consensus 401 ~~~~~~~~~----~~~~~~~l~~~L~~~gI~-v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i 475 (508)
+++++.... ..-....+.+.|.++||. ++.|. ++++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~ir~~~---------------------------------------~~~i 343 (370)
T TIGR02539 303 KFETPGFHEIAQKHKRRGYFLYEELKKRGIHGIRSGQ---------------------------------------TKYF 343 (370)
T ss_pred EEECCchhHHhhhhccccHHHHHHHHhCCCccccCCc---------------------------------------ceEE
Confidence 888754210 001123488899999997 55321 4689
Q ss_pred EEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 476 RVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 476 Ris~~~~~t~eev~~l~~~~~~~~~ 500 (508)
|+|++ ..|.+|+++++++|+++++
T Consensus 344 Ris~~-~~t~e~i~~l~~~L~~~~~ 367 (370)
T TIGR02539 344 KLSVY-GLTKEQVEYVVDSFEEIVE 367 (370)
T ss_pred EEEec-CCCHHHHHHHHHHHHHHHH
Confidence 99984 4599999999999988764
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-27 Score=261.63 Aligned_cols=350 Identities=13% Similarity=0.086 Sum_probs=258.2
Q ss_pred hhccCC-CCCeeeeCCCCCC----CCHHHHHHHHHHhhcccc--CCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCce
Q 010538 33 EFKRLE-NGTVYLDHAGATL----YSELQMEAIFRDFTTNVY--GNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYK 105 (508)
Q Consensus 33 ~f~~~~-~~~iyld~~~~~~----~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~ 105 (508)
+|..+. .+.+|+++.+.+. +|+.+.+++.... +++ -.|... ..+....+.+.+.+..+++++|++++ +
T Consensus 93 ~~~~la~kN~~~~~fiG~G~y~~~~P~~v~~~i~~~~--~~~TaytPYqa-EisQG~lqal~~~Qt~ia~LtG~~~a--n 167 (993)
T PLN02414 93 HMKSLASKNKVFKSYIGMGYYNTHVPPVILRNILENP--GWYTQYTPYQA-EIAQGRLESLLNYQTMITDLTGLPMS--N 167 (993)
T ss_pred HHHHHHhcCCccccccCCCCCCccCCHHHHHHHHhCh--HHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHhCCChh--h
Confidence 444332 6778999999998 7777767765422 111 123221 22244567788899999999999998 8
Q ss_pred EEEcCChHHHHHHHHhhcCCCCC--CeEEEecccccchHHHH-HHHHhcCCeEEEEccCCccCccccccccccccccccc
Q 010538 106 CIFTSGATAALKLVGEAFPWSHQ--SSYMYTMENHNSVLGIR-EYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLL 182 (508)
Q Consensus 106 i~~t~g~t~al~~~~~~l~~~~g--~~vl~~~~~h~s~~~~~-~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d 182 (508)
+.++.++|.+++.++.++.+.+| ++|++++.+||++...+ .+++..|++|+.+|.+.....
T Consensus 168 aSL~d~aTAaaea~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~~~~---------------- 231 (993)
T PLN02414 168 ASLLDEGTAAAEAMAMCNNILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDFDYS---------------- 231 (993)
T ss_pred EeecCChHHHHHHHHHHHhcccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhhccc----------------
Confidence 99999999999999888866644 78999999999987655 456778999999987431100
Q ss_pred hhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCC-CC
Q 010538 183 PIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPP-DL 261 (508)
Q Consensus 183 ~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~-d~ 261 (508)
++.+..+ +.+..|.+|.+.|+++|.++||+ +|++++| +++..+..++ +.
T Consensus 232 ----------------~~~v~~v-lvq~P~~~G~v~dv~~I~~~ah~------------~GaL~iV-aad~lal~~l~~p 281 (993)
T PLN02414 232 ----------------SGDVCGV-LVQYPATDGEVLDYAEFVKNAHA------------NGVKVVM-ATDLLALTMLKPP 281 (993)
T ss_pred ----------------cCceEEE-EEecCCCCeEEcCHHHHHHHHHH------------cCCEEEE-EECHHHhcCCCCH
Confidence 1122222 35666789999999999999998 8999999 8888888888 58
Q ss_pred CCCCCcEEEEeccccc-----cCCCcceEEEEechhHhhhccccccCceEEecccchhhh--hhccCccccccCCCCChh
Q 010538 262 SKYPVDFVVMSFYKIF-----GYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFV--KRRQGVEELFEDGTASFL 334 (508)
Q Consensus 262 ~~~~~D~~~~S~~K~~-----g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~gt~~~~ 334 (508)
.++|+||+++++|||. |||. .|++++++++...+.+.+.|+... ......|. .....+..|++.||.|+.
T Consensus 282 ge~GADi~vgsgqKwg~P~G~GGP~-aGflavr~~~~r~~PgriVG~s~d--~~g~~~~~l~LqtReqhiRrEkaTsNic 358 (993)
T PLN02414 282 GEWGADIVVGSAQRFGVPMGYGGPH-AAFLATSQEYKRLMPGRIIGVSVD--SSGKPALRMAMQTREQHIRRDKATSNIC 358 (993)
T ss_pred hhccCcEEEECCCccccCCCCCCCC-eeEEEECHHHHhhCCCcccCcccC--CCCCcccccccccccchhhhcccccchh
Confidence 8999999999999998 4443 899999999866444467776321 11111111 112344678999999996
Q ss_pred HHHHHHHHHH-----HHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCC
Q 010538 335 SIASIRHGFN-----LINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDG 409 (508)
Q Consensus 335 ~~~~l~~al~-----~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 409 (508)
...++.+++. ++...|++++.+++.+++.++++.|.+. |+++..++. ..+++|++++ .
T Consensus 359 t~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~~-------G~~~~~~~~--------f~~vt~~~~~--~ 421 (993)
T PLN02414 359 TAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKKL-------GFQVQSLPF--------FDTVKVKCSD--A 421 (993)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhc-------CCccCCCCC--------cCeEEEecCC--H
Confidence 6666655543 4455899999999999999999999875 688766532 5688888742 1
Q ss_pred CccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHH
Q 010538 410 SWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAK 489 (508)
Q Consensus 410 ~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~ 489 (508)
.++.+.|.++||.++.. ..+.+|+|+|.+||.+||+
T Consensus 422 -----~~v~~~L~~~gI~l~~~---------------------------------------~~~~lrvs~~e~~T~edId 457 (993)
T PLN02414 422 -----DAIADAAAKVGINLRVV---------------------------------------DANTVTVSFDETTTLEDVD 457 (993)
T ss_pred -----HHHHHHHHHCCCeeEEe---------------------------------------cCCeEEEEeeccCCHHHHH
Confidence 35889999999987652 1457999999999999999
Q ss_pred HHHHhhhh
Q 010538 490 VNRCSSFD 497 (508)
Q Consensus 490 ~l~~~~~~ 497 (508)
+|++++..
T Consensus 458 ~L~~~l~~ 465 (993)
T PLN02414 458 KLFKVFAG 465 (993)
T ss_pred HHHHHHcc
Confidence 99999863
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-27 Score=243.35 Aligned_cols=347 Identities=14% Similarity=0.104 Sum_probs=247.0
Q ss_pred CCCeeeeCCCCCCC-CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC--CCCCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGATLY-SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN--ASMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~--~~~~~~~i~~t~g~t~a 115 (508)
.+.|.|+.+-...+ |+.+.+++.+..... ...|+.......+.+++.+.+.+..| .++++ +|++|+|+++|
T Consensus 28 ~~vi~l~iG~Pd~~~p~~i~~a~~~a~~~~-----~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~-eiivt~Ga~~a 101 (393)
T COG0436 28 EDVIDLSIGEPDFPTPEHIIEAAIEALEEG-----GTHYTPSAGIPELREAIAEKYKRRYGLDVDPEE-EIIVTAGAKEA 101 (393)
T ss_pred CCEEEeCCCCCCCCCCHHHHHHHHHHHhcc-----cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-eEEEeCCHHHH
Confidence 36899998876444 555667765544321 10222233345556666666666666 35542 59999999999
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCcc-CccccccccccccccccchhhhhcCCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAV-DNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~-~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
+.+++.++ ..+||+||+++..|+++.....++ |.+++.+|++... .+ ++|+++++ +++
T Consensus 102 l~~~~~a~-~~pGDeVlip~P~Y~~y~~~~~~~---gg~~v~v~l~~~~~~f-------------~~d~~~l~--~~i-- 160 (393)
T COG0436 102 LFLAFLAL-LNPGDEVLIPDPGYPSYEAAVKLA---GGKPVPVPLDEEENGF-------------KPDLEDLE--AAI-- 160 (393)
T ss_pred HHHHHHHh-cCCCCEEEEeCCCCcCHHHHHHhc---CCEEEEEeCCcCccCC-------------cCCHHHHH--hhc--
Confidence 99999999 789999999999999988877765 9999999975321 22 34789999 444
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCCCCCCCC----CC
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQPPDLSKY----PV 266 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d~~~~----~~ 266 (508)
+++||++++++++||||.+++.+++.++++ +|++||++||.|.++.. +..+.++.+. +.
T Consensus 161 ----~~ktk~i~ln~P~NPTGav~~~~~l~~i~~---------~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~ 227 (393)
T COG0436 161 ----TPKTKAIILNSPNNPTGAVYSKEELKAIVE---------LAREHDIIIISDEIYEELVYDGAEHPSILELAGARDR 227 (393)
T ss_pred ----CccceEEEEeCCCCCcCcCCCHHHHHHHHH---------HHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcce
Confidence 679999999999999999999998888887 67779999999999763 3223333222 34
Q ss_pred cEEEEeccccccCCCc--ceEEEEe-chhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHH
Q 010538 267 DFVVMSFYKIFGYPTG--LGALIMR-NDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGF 343 (508)
Q Consensus 267 D~~~~S~~K~~g~P~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al 343 (508)
-+.+.|++|.|+ .+| +||++++ +++++.+... ......++ +.+...+..+++
T Consensus 228 ~i~i~s~SK~~~-mtGwRvG~~v~~~~~l~~~~~~~-----------------------~~~~~~~~-~~~~Q~aa~~aL 282 (393)
T COG0436 228 TITINSFSKTYG-MTGWRIGWVVGPPEELIAALRKL-----------------------KSYLTSCA-PTPAQYAAIAAL 282 (393)
T ss_pred EEEEeccccccc-ccccceeEeecChHHHHHHHHHH-----------------------HHhcccCC-CHHHHHHHHHHh
Confidence 577889999999 778 9999999 6666554422 11112233 444455555577
Q ss_pred HHHHh-cChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCC-CCCccCHHHHHHHH
Q 010538 344 NLINS-LTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRP-DGSWFGYREVEKLA 421 (508)
Q Consensus 344 ~~~~~-~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~l~~~L 421 (508)
+.-++ ..++..++...+.++.+.+.|.+. +|+.+..++.. +.+++.+++.. +.. ....++|
T Consensus 283 ~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~------~g~~~~~~p~G-------a~Y~~~~i~~~~d~~----~f~~~Ll 345 (393)
T COG0436 283 NGPQSDEVVEEMREEYRERRDLLVEALNEI------GGLSVVKPPEG-------AFYLFPKIPELLDSE----EFAKKLL 345 (393)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHhc------CCeeeccCCCe-------eEEEEeecCCCCCHH----HHHHHHH
Confidence 64322 235666788999999999999988 36888874432 68888888763 222 2356777
Q ss_pred hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 422 SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 422 ~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
++.||.|.+|..+..+. ..+++|+|+.. +.++++..++++.++++.
T Consensus 346 ~~~gV~v~PG~~Fg~~~--------------------------------g~~~vRis~~~--~~~~l~~a~~rl~~~~~~ 391 (393)
T COG0436 346 EEAGVAVVPGSGFGEPP--------------------------------GEGYVRLSLAT--SEETLEEALRRLARFLAE 391 (393)
T ss_pred HhCCEEEecccccCCCC--------------------------------CCCeEEEEEec--CHHHHHHHHHHHHHHHHh
Confidence 88899999998665421 26899999995 448889888888877654
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-26 Score=245.26 Aligned_cols=365 Identities=11% Similarity=0.010 Sum_probs=241.0
Q ss_pred eeeeCC-CCCCCCHHHHHHHHHHh-hccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHH
Q 010538 42 VYLDHA-GATLYSELQMEAIFRDF-TTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLV 119 (508)
Q Consensus 42 iyld~~-~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~ 119 (508)
.|+.-+ .....+|.+.+++...- +.. .+|...........++..++++++++++|.+.. .+..++|++..+..+
T Consensus 71 ~~~g~G~~~~~~~p~i~~~~~~~~~~~~--~tpYq~e~~sqG~lel~~~~~~~la~l~G~~~~--~l~~~~GA~a~~~~l 146 (481)
T PRK04366 71 GFYPLGSCTMKYNPKINEKVARLPGFAE--LHPLQPEETVQGALELMYELQEWLKEITGMDAV--TLQPAAGAHGELTGL 146 (481)
T ss_pred ceecCcccCCCCCHHHHHHHHhCcchhc--CCCCCChhhhhHHHHHHHHHHHHHHHHhCCCce--EEEeCcHHHHHHHHH
Confidence 455555 34456777777765531 111 122211123445668888999999999999754 444455555544422
Q ss_pred --HhhcCCCCCC----eEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCC
Q 010538 120 --GEAFPWSHQS----SYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFP 193 (508)
Q Consensus 120 --~~~l~~~~g~----~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~ 193 (508)
++.+...+|+ +|+++...||++.... +..|++++.+|.+.++.+ |+++++ +++
T Consensus 147 ~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~~---~~~G~~vv~v~~~~~~~~---------------D~e~L~--~~i- 205 (481)
T PRK04366 147 LMIRAYHEARGDTKRTEVIVPDSAHGTNPASA---AMAGFKVVEIPSNEDGLV---------------DLEALK--AAV- 205 (481)
T ss_pred HHHHHHhhccCcCCCCEEEEcCCccHhHHHHH---HHcCCEEEEeecCCCCCc---------------CHHHHH--hhc-
Confidence 3333234444 8999999999988664 446999999999765555 688888 554
Q ss_pred CCCCCCCCceEEEEeCCCCCCccc-cCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC-CCCCCCCCCcEEEE
Q 010538 194 ERDPAGDAYNLFAFPSECNFSGSR-FNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ-PPDLSKYPVDFVVM 271 (508)
Q Consensus 194 ~~~~~~~~t~lv~~~~~~n~tG~~-~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~-~~d~~~~~~D~~~~ 271 (508)
+++|++|++++++ +||.+ .|+++|.++||+ +|++++||++|..+.. .++..++++|++++
T Consensus 206 -----~~~t~~V~v~~Pn-~tG~~~~dl~eI~~~a~~------------~gal~iVD~a~~~~~~g~~~~~~~GaD~~~~ 267 (481)
T PRK04366 206 -----GEDTAALMLTNPN-TLGLFERNILEIAEIVHE------------AGGLLYYDGANLNAILGKARPGDMGFDVVHL 267 (481)
T ss_pred -----ccCCeEEEEeCCC-CccccchHHHHHHHHHHH------------cCCEEEEEecChhhhcccCCccccCCCEEEE
Confidence 5678999999876 99987 589999999998 8999999999986532 35677889999999
Q ss_pred eccccccCCC-----cceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHH
Q 010538 272 SFYKIFGYPT-----GLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLI 346 (508)
Q Consensus 272 S~~K~~g~P~-----G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~ 346 (508)
|+||||++|. |+|++++++++.+.+.+.+.+.....+... +. .....++++.++.+...+.+....+..+
T Consensus 268 ~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~~v~~~g~~~~l~---~~--r~~~i~r~~a~t~~~l~~~~a~~~l~~~ 342 (481)
T PRK04366 268 NLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVPVVEKDGDRYRLD---YD--RPKSIGRVRAFYGNFGVLVRAYAYIRSL 342 (481)
T ss_pred echhhcCCCCCCCCCCeeeeeehhhhHhhCCCCeeeccCCceeec---cc--ccccCCCcccccCchHHHHHHHHHHHHH
Confidence 9999987664 367999999888777655443210011110 00 0111345666666655455555555555
Q ss_pred HhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCC
Q 010538 347 NSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGI 426 (508)
Q Consensus 347 ~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI 426 (508)
...|++++.+++..+++||++.|+++. .+. .+. . ..+.+.|..+.......+..++.+.|.++||
T Consensus 343 G~~Gl~~~a~~~~~~a~~l~~~L~~~~------~~~--~~~-~------~~~~~~~~~~~~~~~g~~~~~v~~~L~~~Gi 407 (481)
T PRK04366 343 GAEGLREVSEDAVLNANYLKARLKDIY------DLP--YDR-P------CMHEFVLSGKKLKETGVRTLDIAKRLLDYGF 407 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhC------ccc--CCC-C------eeEEEEEECccccccCCCHHHHHHHHHHCCc
Confidence 556677888999999999999998752 222 121 1 0222333332111111345679999999999
Q ss_pred eeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhh
Q 010538 427 QLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 427 ~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~ 503 (508)
.+..... + ....+.+|+|++.++|.+|||+++++|+++.+.+.
T Consensus 408 ~~~~~~~---p-------------------------------~~~~~~l~is~~e~~t~edid~l~~~l~~i~~~~~ 450 (481)
T PRK04366 408 HPPTIYF---P-------------------------------LIVPEALMIEPTETESKETLDAFIAAMKQIAEEAK 450 (481)
T ss_pred cCCcccc---c-------------------------------cccCCeEEEcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9663111 1 01257899999999999999999999998876543
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-26 Score=239.11 Aligned_cols=342 Identities=17% Similarity=0.160 Sum_probs=230.7
Q ss_pred CCCeeeeCCCCCCC-CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHH
Q 010538 39 NGTVYLDHAGATLY-SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALK 117 (508)
Q Consensus 39 ~~~iyld~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~ 117 (508)
.+.|.|+.+....+ ++.+.+++.+.. ... ....|. ......++|+++++++|++++ +|++|+|+|+|+.
T Consensus 28 ~~~i~l~~~~~~~~~~~~~~~a~~~~~-~~~---~~~~y~----~~~g~~~lr~~ia~~l~~~~~--~v~~~~g~t~al~ 97 (380)
T PRK06225 28 KEMIWMGQNTNHLGPHEEVREAMIRCI-EEG---EYCKYP----PPEGFPELRELILKDLGLDDD--EALITAGATESLY 97 (380)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHH-hcC---CCCCCC----CCcchHHHHHHHHHhcCCCCC--cEEEeCCHHHHHH
Confidence 67899997765554 555555554433 211 111111 122367789999999999988 8999999999999
Q ss_pred HHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc---cCccccccccccccccccchhhhhcCCCCCC
Q 010538 118 LVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA---VDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 118 ~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~---~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
+++.++ ..+|++|+++...|+.+ ...++..|++++.+|++.. ..+ |++.++ +++
T Consensus 98 ~~~~~~-~~~gd~vl~~~p~y~~~---~~~~~~~g~~~~~v~~~~~~~~~~~---------------d~~~l~--~~~-- 154 (380)
T PRK06225 98 LVMRAF-LSPGDNAVTPDPGYLII---DNFASRFGAEVIEVPIYSEECNYKL---------------TPELVK--ENM-- 154 (380)
T ss_pred HHHHHh-cCCCCEEEEcCCCCcch---HHHHHHhCceEEeeccccccCCccC---------------CHHHHH--hhc--
Confidence 999998 57788899887655533 3445567999999987431 233 678888 554
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEecccc---CCCCCCCCCCCCCcEEEE
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKG---CVTQPPDLSKYPVDFVVM 271 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~---~g~~~~d~~~~~~D~~~~ 271 (508)
+++++++++++++||||.+++.+++.++++ +|+++|+++|+|+++. .+..+...-..+..+++.
T Consensus 155 ----~~~~~~v~l~~p~NptG~~~~~~~~~~i~~---------~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~i~~~ 221 (380)
T PRK06225 155 ----DENTRLIYLIDPLNPLGSSYTEEEIKEFAE---------IARDNDAFLLHDCTYRDFAREHTLAAEYAPEHTVTSY 221 (380)
T ss_pred ----CCCceEEEEeCCCCCCCcCCCHHHHHHHHH---------HHHHCCcEEEEehhHHHHhccCCchhhcCCCCEEEEe
Confidence 456899999999999999999666665555 3455999999999874 222211111123467888
Q ss_pred eccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhc
Q 010538 272 SFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSL 349 (508)
Q Consensus 272 S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~ 349 (508)
|++|++| ++| +|++++++++++.+.+...+ . ...+.....+..++++...+
T Consensus 222 s~SK~~g-~~G~RiG~i~~~~~l~~~~~~~~~~------------------------~-~~~~~~~~~~a~~~l~~~~~- 274 (380)
T PRK06225 222 SFSKIFG-MAGLRIGAVVATPDLIEVVKSIVIN------------------------D-LGTNVIAQEAAIAGLKVKDE- 274 (380)
T ss_pred echhhcC-CccceeEEEecCHHHHHHHHHHHhc------------------------c-cCCCHHHHHHHHHHHhcchH-
Confidence 9999998 768 79999999887766543110 0 11233333333334432211
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEe-cCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCee
Q 010538 350 TVPAICRHIASLGMYVRKVLLSLRHENGADVCTIY-GTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQL 428 (508)
Q Consensus 350 g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v 428 (508)
.++.+.+...++++++.+.|++++ ++.+. .+.. ++++++.++... ++..++.+.|.++||.+
T Consensus 275 ~~~~~~~~~~~~~~~l~~~L~~~~------~~~~~~~~~~--------g~~~~~~~~~~~---~~~~~l~~~l~~~gi~v 337 (380)
T PRK06225 275 WIDRIRRTTFKNQKLIKEAVDEIE------GVFLPVYPSH--------GNMMVIDISEAG---IDPEDLVEYLLERKIFV 337 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCc------CCccccCCCC--------CeEEEEEccccc---CCHHHHHHHHHHCCEEE
Confidence 145555666677778888888753 33222 1222 678888875421 34456888888999999
Q ss_pred ccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhhh
Q 010538 429 RTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQF 504 (508)
Q Consensus 429 ~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~~ 504 (508)
++|..|.... .++++|+|++. ++|+++++++.|+++++.++.
T Consensus 338 ~~g~~~~~~~--------------------------------~~~~iR~s~~~--~~e~l~~~~~~l~~~~~~~~~ 379 (380)
T PRK06225 338 RQGTYTSKRF--------------------------------GDRYIRVSFSI--PREQVEVFCEEFPDVVETLRT 379 (380)
T ss_pred cCCcccCcCC--------------------------------CCceEEEEeCC--CHHHHHHHHHHHHHHHHHhhc
Confidence 9987653321 25789999974 799999999999999987764
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-27 Score=238.76 Aligned_cols=324 Identities=15% Similarity=0.078 Sum_probs=226.5
Q ss_pred CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEE
Q 010538 53 SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYM 132 (508)
Q Consensus 53 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl 132 (508)
+|.+++++.+ .+.+ +.++.+.+..........+++++.++++++++ + .++ ++++++++..++.++ .++|++|+
T Consensus 17 ~~~v~~a~~~-~~~~-~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-~--~iv-~~sg~~a~~~~~~~~-~~~gd~Vl 89 (349)
T cd06454 17 HPEVIEAAKE-ALDK-YGVGAGGSRLISGTSDLHEELEEELAEFHGKE-A--ALV-FSSGYAANDGVLSTL-AGKGDLII 89 (349)
T ss_pred CHHHHHHHHH-HHHH-hCCCCCCcCeecCCchHHHHHHHHHHHHhCCC-C--EEE-eccHHHHHHHHHHHh-cCCCCEEE
Confidence 6777777655 4443 33332222222234677889999999999985 3 355 455567887777777 57899999
Q ss_pred EecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCC
Q 010538 133 YTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECN 212 (508)
Q Consensus 133 ~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n 212 (508)
++...|+++... ++..|++++.++.. |+++++ +.+++.. ..+++++|++++++|
T Consensus 90 ~~~~~~~~~~~~---~~~~g~~~~~~~~~--------------------~~~~le--~~i~~~~-~~~~~~~v~~~~~~~ 143 (349)
T cd06454 90 SDSLNHASIIDG---IRLSGAKKRIFKHN--------------------DMEDLE--KLLREAR-RPYGKKLIVTEGVYS 143 (349)
T ss_pred EehhhhHHHHHH---HHHcCCceEEecCC--------------------CHHHHH--HHHHHhh-ccCCCeEEEEecccc
Confidence 999888876543 34568888877531 233444 3332110 124678999999999
Q ss_pred CCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCC--------CCCCCCCCcEEEEeccccccCCCcce
Q 010538 213 FSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQP--------PDLSKYPVDFVVMSFYKIFGYPTGLG 284 (508)
Q Consensus 213 ~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~--------~d~~~~~~D~~~~S~~K~~g~P~G~G 284 (508)
+||...|+++|.++|++ +|+++|+|++|+.|..+ ++....+.|+++.|+||+++ +.| |
T Consensus 144 ~tG~~~~~~~i~~~~~~------------~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~g-G 209 (349)
T cd06454 144 MDGDIAPLPELVDLAKK------------YGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFG-AVG-G 209 (349)
T ss_pred CCCCccCHHHHHHHHHH------------cCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhc-ccC-C
Confidence 99999999999999998 99999999999876543 23334578999999999999 666 8
Q ss_pred EEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Q 010538 285 ALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMY 364 (508)
Q Consensus 285 ~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~ 364 (508)
+++.++++.+.+.+.... ....++.+...++++.++++.+.+ .+.+++++.+++++
T Consensus 210 ~i~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~ 265 (349)
T cd06454 210 YIAGSKELIDYLRSYARG----------------------FIFSTSLPPAVAAAALAALEVLQG--GPERRERLQENVRY 265 (349)
T ss_pred EEECCHHHHHHHHHhchh----------------------hhccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHH
Confidence 888888876655432110 011245667778888889888765 57788999999999
Q ss_pred HHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcC
Q 010538 365 VRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLG 444 (508)
Q Consensus 365 l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~ 444 (508)
+.+.|.++ ++.++.++. ..++++.++.. .+..++.+.|.++||.++.+......
T Consensus 266 l~~~l~~~-------g~~~~~~~~--------~~~~~~~~~~~----~~~~~~~~~L~~~gI~~~~~~~~~~~------- 319 (349)
T cd06454 266 LRRGLKEL-------GFPVGGSPS--------HIIPPLIGDDP----AKAVAFSDALLERGIYVQAIRYPTVP------- 319 (349)
T ss_pred HHHHHHhc-------CCcccCCCC--------CcEEEEeCCCh----HHHHHHHHHHHhCCceEEEecCCccC-------
Confidence 99999886 465554432 34444444321 12345888888889999874321110
Q ss_pred CChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 445 LSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 445 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
...+++|++++.++|.+|+++++++|+++
T Consensus 320 -------------------------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 320 -------------------------RGTARLRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred -------------------------CCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 11478999999999999999999998753
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=240.01 Aligned_cols=341 Identities=14% Similarity=0.075 Sum_probs=229.5
Q ss_pred CCCeeeeCCCCCCC-CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC--CCCCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGATLY-SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN--ASMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~--~~~~~~~i~~t~g~t~a 115 (508)
++.+.|+.+-...+ ++.+.+++.+ ...+ ....|........+.+.+.+.+.+.+| ++++ +|++|+|+++|
T Consensus 24 ~~~i~l~~g~~~~~~~~~~~~~~~~-~~~~----~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~--~i~~t~g~~~a 96 (382)
T PRK06108 24 EGVLPLWFGESDLPTPDFIRDAAAA-ALAD----GETFYTHNLGIPELREALARYVSRLHGVATPPE--RIAVTSSGVQA 96 (382)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHH-HHhc----CCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcc--eEEEeCChHHH
Confidence 46788887765544 5555555443 3322 111222222233444555555555567 6777 89999999999
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCcc-CccccccccccccccccchhhhhcCCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAV-DNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~-~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
+.+++.++ .++|+.|+++...|+.+... ++..|++++.+|.+.+. .. ..|+++++ +++
T Consensus 97 l~~~~~~l-~~~gd~vl~~~p~y~~~~~~---~~~~g~~~~~v~~~~~~~~~-------------~~d~~~l~--~~~-- 155 (382)
T PRK06108 97 LMLAAQAL-VGPGDEVVAVTPLWPNLVAA---PKILGARVVCVPLDFGGGGW-------------TLDLDRLL--AAI-- 155 (382)
T ss_pred HHHHHHHh-cCCCCEEEEeCCCccchHHH---HHHCCCEEEEeeCCCCCCCc-------------cCCHHHHH--Hhc--
Confidence 99999988 67889999998888766544 44569999999986422 11 11678888 554
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCC--------CCCCC-CC
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQP--------PDLSK-YP 265 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~--------~d~~~-~~ 265 (508)
.++++++++++++||||.++|.+++.++++ +|+++|+++|+|++++..... .++.. .+
T Consensus 156 ----~~~~~~i~l~~p~NPtG~~~~~~~~~~l~~---------~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~ 222 (382)
T PRK06108 156 ----TPRTRALFINSPNNPTGWTASRDDLRAILA---------HCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDD 222 (382)
T ss_pred ----CccceEEEEECCCCCCCcccCHHHHHHHHH---------HHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcC
Confidence 357899999999999999999877666665 455599999999997643211 12221 13
Q ss_pred CcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHH
Q 010538 266 VDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGF 343 (508)
Q Consensus 266 ~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al 343 (508)
..+++.|++|.|| ++| +|++++++++++.+..... +.....+.....++..++
T Consensus 223 ~~i~~~S~SK~~g-~~G~RiG~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~q~a~~~~l 277 (382)
T PRK06108 223 RIIFVNSFSKNWA-MTGWRLGWLVAPPALGQVLEKLIE------------------------YNTSCVAQFVQRAAVAAL 277 (382)
T ss_pred CEEEEeechhhcc-CcccceeeeeCCHHHHHHHHHHHH------------------------hcccCCChHHHHHHHHHH
Confidence 4588999999988 446 8999999988876654310 001122333333333344
Q ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHH-h
Q 010538 344 NLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLA-S 422 (508)
Q Consensus 344 ~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L-~ 422 (508)
+... ..+++++++++++++++.+.|+++ +++++..|.+ +.++++++++. .+..++.+.| +
T Consensus 278 ~~~~-~~~~~~~~~~~~~~~~l~~~L~~~------~~~~~~~p~~--------g~~~~~~l~~~----~~~~~~~~~ll~ 338 (382)
T PRK06108 278 DEGE-DFVAELVARLRRSRDHLVDALRAL------PGVEVAKPDG--------AMYAFFRIPGV----TDSLALAKRLVD 338 (382)
T ss_pred hCCh-HHHHHHHHHHHHHHHHHHHHHHhC------CCCcccCCCe--------eEEEEEeCCCC----CCHHHHHHHHHH
Confidence 3211 125778889999999999999886 3677665543 67788888653 1233466655 6
Q ss_pred hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 423 LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 423 ~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
++||.+++|..|... ..+++|+|++. +.++++..++.|++++
T Consensus 339 ~~gV~v~pg~~f~~~---------------------------------~~~~~Ris~~~--~~~~l~~~l~~l~~~l 380 (382)
T PRK06108 339 EAGLGLAPGTAFGPG---------------------------------GEGFLRWCFAR--DPARLDEAVERLRRFL 380 (382)
T ss_pred hCCEEEeCchhhCCC---------------------------------CCCEEEEEecC--CHHHHHHHHHHHHHHH
Confidence 789999998755321 25789999998 8999999999888765
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-26 Score=235.69 Aligned_cols=349 Identities=13% Similarity=0.092 Sum_probs=250.3
Q ss_pred CeeeeCCCCCCCCHHHHHHHHHHhhccccCCCC----CccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEc-CChHHH
Q 010538 41 TVYLDHAGATLYSELQMEAIFRDFTTNVYGNPH----SQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFT-SGATAA 115 (508)
Q Consensus 41 ~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t-~g~t~a 115 (508)
.+|+=.+|.+.+|+.|++++.++++. |.+.+ .....+....++++++++.+.++++++. +|+|+|. .|+|.+
T Consensus 7 ~~~~f~pGP~~lp~~Vl~~~~~~~~~--~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~-~y~v~~l~Gsgt~~ 83 (365)
T PLN02452 7 RVFNFSAGPATLPANVLAKAQAELYN--WEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPD-NYEVLFLQGGASTQ 83 (365)
T ss_pred ceEeeeCCCCCCCHHHHHHHHHHHhc--ccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCC-CceEEEEeCccHHH
Confidence 34555566777899999998876642 11111 1223455678999999999999999854 4677655 889999
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPER 195 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~ 195 (508)
+..+...+ ..+|+++++.....-+ ..+.+.+++.|...+.....+...... +++++++
T Consensus 84 ~ea~~~nl-~~~~~~~l~~~~G~fg-~r~~~~a~~~g~~~~~~~~~~~~~~~~------------~~~~~~~-------- 141 (365)
T PLN02452 84 FAAIPLNL-CKPGDKADFVVTGSWS-KKAAKEAKKYCKTNVIASGKDEKYTKI------------PSVSEWE-------- 141 (365)
T ss_pred HHHHHHhc-CCCCCeEEEEECCHHH-HHHHHHHHHhCCCcEEEecCCCCCCCC------------CChHHcC--------
Confidence 99999998 4566666555432222 246677777786444432222111100 1333343
Q ss_pred CCCCCCceEEEEeCCCCCCccc-cCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEecc
Q 010538 196 DPAGDAYNLFAFPSECNFSGSR-FNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFY 274 (508)
Q Consensus 196 ~~~~~~t~lv~~~~~~n~tG~~-~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~ 274 (508)
.+++.+.|.++|..+.||+. .|++++. +++++||+++++|..|+|+.++++|+ +|+|
T Consensus 142 --~~~~~~~v~~~hnETstGv~~~~~~~i~------------------~~~lvVDa~Ss~g~~pidv~~~~v~~--~saq 199 (365)
T PLN02452 142 --LTPDAKFVHICANETIHGVEFKDYPDVG------------------NVPLVADMSSNFLSKPVDVSKYGVIY--AGAQ 199 (365)
T ss_pred --CCCCCcEEEECCCCCCCcEecCcccccC------------------CCeEEEECCccccCcccCHHHcCEEE--Eecc
Confidence 14568999999999999995 7766552 47999999999999999999988866 6999
Q ss_pred ccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhc-ChHH
Q 010538 275 KIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSL-TVPA 353 (508)
Q Consensus 275 K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~ 353 (508)
|.+| |+|+|++++++++++++.+.... ..+|.... ......+|||+..++++..+++|+.+. |++.
T Consensus 200 K~lG-P~Gl~~v~vr~~~l~~~~~~~~~---------~~~~~~~~---~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~ 266 (365)
T PLN02452 200 KNVG-PSGVTIVIIRKDLIGNARPITPG---------MLDYKIHA---ENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKA 266 (365)
T ss_pred cccC-CCCeEEEEEcHHHHhhcccCCCc---------hhhHHHHH---hcCCccCChhHHHHHHHHHHHHHHHHccCHHH
Confidence 9998 99999999999998876543111 11121111 122344799999999999999999886 8999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCC
Q 010538 354 ICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCF 433 (508)
Q Consensus 354 i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~ 433 (508)
+.+|.+++++++++.|++.+ |+ +.+.... ..++..+++|.+++.+ ...++.+.++++|+....|+.
T Consensus 267 ~~~r~~~~a~~l~~~l~~~~------G~--y~~~~~~--~~rs~~~vsF~~~~~~----~~~~f~~~~~~~g~~~~~G~r 332 (365)
T PLN02452 267 MEKRNIRKADLLYDAIDESN------GF--YVCPVEK--SVRSLMNVPFTLGGSE----LEAEFVKEAAKAGMVQLKGHR 332 (365)
T ss_pred HHHHHHHHHHHHHHHHHhCC------Cc--ccCCCCh--HHhCCeEEEEEcCCch----hHHHHHHHHHHCCCcccCCcc
Confidence 99999999999999999863 45 2221110 0234679999987753 235689999999999988752
Q ss_pred CCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 434 CNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 434 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
. -+.+|+|+-...+.++|++|++.|++|.+
T Consensus 333 ~-------------------------------------~gg~R~s~yna~~~~~v~~L~~~m~~f~~ 362 (365)
T PLN02452 333 S-------------------------------------VGGMRASIYNAMPLAGVEKLVAFMKDFQA 362 (365)
T ss_pred c-------------------------------------cCceEEECcCCCCHHHHHHHHHHHHHHHH
Confidence 1 23499999999999999999999999865
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-27 Score=242.51 Aligned_cols=326 Identities=14% Similarity=0.107 Sum_probs=224.5
Q ss_pred eeeCCCCCCCCHHHHHHHHHHhhccccCCCCC-ccchhhh----hhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHH
Q 010538 43 YLDHAGATLYSELQMEAIFRDFTTNVYGNPHS-QSDISLA----TCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALK 117 (508)
Q Consensus 43 yld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~ 117 (508)
|||.+..+++.+.+++++.+ +..+. |.+ .+..+.+ .....+++++.+|+++|++. .++|++|++ ++.
T Consensus 14 YL~~~~~~~~~~~~~~~~~~-~~~~~---p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~---~l~~~sG~~-a~~ 85 (370)
T PRK05937 14 FLGFSRSDTLVHEVEKRYRL-YCRQF---PHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPE---AFIVPSGYM-ANL 85 (370)
T ss_pred ccCCCCCHHHHHHHHHHHHH-hcccc---CCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCe---EEEECChHH-HHH
Confidence 88888887777777666544 32221 332 2223333 67789999999999999964 478887775 555
Q ss_pred HHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCC
Q 010538 118 LVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP 197 (508)
Q Consensus 118 ~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~ 197 (508)
.++..+ .++++.|++...+|+++...++.+ .|..+. ++. . |++.++ +.|++...
T Consensus 86 ~~~~~~-~~~~d~ii~d~~~H~sv~~~~~~~--~~~~~~-~~~-----~---------------d~~~l~--~~l~~~~~ 139 (370)
T PRK05937 86 GLCAHL-SSVTDYVLWDEQVHISVVYSLSVI--SGWHQS-FRH-----N---------------DLDHLE--SLLESCRQ 139 (370)
T ss_pred HHHHHh-CCCCCEEEEEhhhhHHHHHHHHHc--CCceEE-ecC-----C---------------CHHHHH--HHHHhhhc
Confidence 555555 456889999899999988776653 233332 322 1 345555 44432111
Q ss_pred CCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCC----CCC---CcEEE
Q 010538 198 AGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLS----KYP---VDFVV 270 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~----~~~---~D~~~ 270 (508)
..+.+.+|++++++|++|.+.|+++|.++|++ +|+++++|++|+.|..+.+.. +++ .++.+
T Consensus 140 ~~~~~~~v~v~~v~s~~G~i~pl~eI~~l~~~------------~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~ 207 (370)
T PRK05937 140 RSFGRIFIFVCSVYSFKGTLAPLEQIIALSKK------------YHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVL 207 (370)
T ss_pred cCCCcEEEEEecCCCCCCCccCHHHHHHHHHH------------cCCEEEEECCccccccCCCCCchHHhhCCCCCcEEE
Confidence 12456788899999999999999999999998 899999999999998888763 233 34677
Q ss_pred EeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcC
Q 010538 271 MSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLT 350 (508)
Q Consensus 271 ~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g 350 (508)
.|++|++| |.|.|+++. ++....+.... .+..+..+ .+.+.++++.++++++.+.+
T Consensus 208 ~tlsK~~g-~~G~~vl~~-~~~~~~~~~~~---------------------~~~~~s~~-~~~~~~~a~~aal~~l~~~~ 263 (370)
T PRK05937 208 VTYSKALG-SMGAALLSS-SEVKQDLMLNS---------------------PPLRYSTG-LPPHLLISIQVAYDFLSQEG 263 (370)
T ss_pred Eechhhhh-cCceEEEcC-HHHHHHHHHhC---------------------CCCeecCC-CCHHHHHHHHHHHHHHHhCc
Confidence 89999999 888777665 44333222110 02223333 55667888999999988776
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeecc
Q 010538 351 VPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRT 430 (508)
Q Consensus 351 ~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~ 430 (508)
+.+++++.++++++.+.|... + + +.+..+.+++.+ ...+.+.|.++||.++.
T Consensus 264 -~~~~~~l~~l~~~l~~~l~~~-------~-----~----------~~~~~i~~~~~~-----~~~~~~~L~~~gi~v~~ 315 (370)
T PRK05937 264 -ELARKQLFRLKEYFAQKFSSA-------A-----P----------GCVQPIFLPGIS-----EQELYSKLVETGIRVGV 315 (370)
T ss_pred -HHHHHHHHHHHHHHHHhcCCC-------C-----C----------CCEEEEEeCChh-----HHHHHHHHHHCCeeEEe
Confidence 667889999999998877532 0 1 122334554432 23588899999998864
Q ss_pred CCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 431 GCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 431 g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
.|.+ ..+.+|+|++++||.||++++++.|+++++.+
T Consensus 316 --~~~~----------------------------------~~~~iRis~~~~~t~edid~l~~~L~~~~~~~ 351 (370)
T PRK05937 316 --VCFP----------------------------------TGPFLRVNLHAFNTEDEVDILVSVLATYLEKY 351 (370)
T ss_pred --eCCC----------------------------------CCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3322 14689999999999999999999999887543
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-26 Score=236.73 Aligned_cols=318 Identities=14% Similarity=0.108 Sum_probs=223.0
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHH
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALK 117 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~ 117 (508)
++.+.|+.+.... +|+.+++++.+.. .....+|. ......+|++++++++++++ +|++|+|+++++.
T Consensus 22 ~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~~---------~~g~~~lr~aia~~~~~~~~--~I~it~Ga~~al~ 89 (349)
T PRK07908 22 PGLLDFAVNVRHDTPPEWLRERLAARL-GDLAAYPS---------TEDERRARAAVAARHGRTPD--EVLLLAGAAEGFA 89 (349)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHh-hHhhcCCC---------ccchHHHHHHHHHHhCcChh--hEEECCCHHHHHH
Confidence 6788898877644 4556666654433 22211121 12256789999999999998 8999999999999
Q ss_pred HHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCC
Q 010538 118 LVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP 197 (508)
Q Consensus 118 ~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~ 197 (508)
+++. + .+++.++ . +|++......++..|.+++.+|++.+..+ |++.++
T Consensus 90 ~~~~-l--~~~~viv-~---~P~y~~~~~~~~~~G~~i~~v~~~~~~~~---------------d~~~l~---------- 137 (349)
T PRK07908 90 LLAR-L--RPRRAAV-V---HPSFTEPEAALRAAGIPVHRVVLDPPFRL---------------DPAAVP---------- 137 (349)
T ss_pred HHHh-c--CCCeEEE-e---CCCChHHHHHHHHcCCEEEeeccCcccCc---------------ChhHhc----------
Confidence 9888 4 4555444 3 57776666777778999999998754333 344443
Q ss_pred CCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC--CCCCCCCCCC--CCcEEEEec
Q 010538 198 AGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC--VTQPPDLSKY--PVDFVVMSF 273 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~--g~~~~d~~~~--~~D~~~~S~ 273 (508)
++++++++++++||||.++|.++|.++++ ++.++|+|++++. ...+.++... +..+++.|+
T Consensus 138 --~~~~~i~l~np~NPTG~~~~~~~l~~l~~-------------~~~~iIvDe~y~~~~~~~~~~l~~~~~~~~i~i~S~ 202 (349)
T PRK07908 138 --DDADLVVIGNPTNPTSVLHPAEQLLALRR-------------PGRILVVDEAFADAVPGEPESLAGDDLPGVLVLRSL 202 (349)
T ss_pred --cCCCEEEEcCCCCCCCCCcCHHHHHHHHh-------------cCCEEEEECcchhhccCCccccccccCCCEEEEeec
Confidence 46789999999999999999999999987 4778888999862 2223344322 223667799
Q ss_pred cccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcCh
Q 010538 274 YKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTV 351 (508)
Q Consensus 274 ~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~ 351 (508)
||.++ ++| +||++++++.++.+.+....+ +.+.....++...++-.....+
T Consensus 203 SK~~~-l~GlRiG~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~a~~~~~~~~~~~~~ 255 (349)
T PRK07908 203 TKTWS-LAGLRVGYALGAPDVLARLTRGRAHW--------------------------PVGTLQLEAIAACCAPRAVAEA 255 (349)
T ss_pred ccccC-CccceeeeeecCHHHHHHHHhcCCCC--------------------------CccHHHHHHHHHHhcccchHHH
Confidence 99988 667 699999998887766542111 1222233333322220001125
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccC
Q 010538 352 PAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTG 431 (508)
Q Consensus 352 ~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g 431 (508)
+++++++.++++++.+.|+++ ++++..|+. ++++++++++ . ..+.+.|+++||.+++|
T Consensus 256 ~~~~~~~~~~r~~l~~~L~~~-------~~~~~~p~~--------g~~~~~~~~~--~-----~~~~~~l~~~gI~v~~g 313 (349)
T PRK07908 256 AADAARLAADRAEMVAGLRAV-------GARVVDPAA--------APFVLVRVPD--A-----ELLRKRLRERGIAVRRG 313 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-------CcEeccCCC--------ceEEEEECCc--H-----HHHHHHHHhCCEEEEEC
Confidence 677888999999999999876 577766544 7999998864 1 24888999999999998
Q ss_pred CCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 432 CFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 432 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
..+.. ..++++|||++ +.+|+++++++|+++++
T Consensus 314 ~~f~~---------------------------------~~~~~vRis~~---~~~~~~~l~~al~~~~~ 346 (349)
T PRK07908 314 DTFPG---------------------------------LDPDYLRLAVR---PRAEVPVLVQALAEILK 346 (349)
T ss_pred CCCCC---------------------------------CCCCeEEEEeC---CCccHHHHHHHHHHHHh
Confidence 75421 12579999996 89999999999988753
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=240.29 Aligned_cols=347 Identities=13% Similarity=0.056 Sum_probs=230.4
Q ss_pred HHHHhhccCCCCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC------CCC
Q 010538 29 IRATEFKRLENGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN------ASM 101 (508)
Q Consensus 29 ~r~~~f~~~~~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------~~~ 101 (508)
.|+ .++.- ++.++|+.+..+. +++.+.+++.+.. .. +. ..|... .....+|+.+|++++ +++
T Consensus 24 ~~~-~~~~~-~~~i~l~~g~~~~~~~~~v~~a~~~~~-~~---~~-~~Y~~~----~g~~~lr~~ia~~~~~~~g~~~~~ 92 (387)
T PRK08960 24 ANE-LEAAG-HDVIHLEIGEPDFTTAEPIVAAGQAAL-AA---GH-TRYTAA----RGLPALREAIAGFYAQRYGVDVDP 92 (387)
T ss_pred HHH-HHhcC-CCeEEeCCCCCCCCCCHHHHHHHHHHH-hc---CC-CccCCC----CCCHHHHHHHHHHHHHHhCCCCCh
Confidence 454 56655 7899999998874 5666777664433 21 11 112211 124556777777763 677
Q ss_pred CCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCcccccccccccccccc
Q 010538 102 KDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISL 181 (508)
Q Consensus 102 ~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~ 181 (508)
+ +|++|+|+++|+.+++.++ ..+|+.|+++...|+++..+... .|.+++.+|++.++.. ..
T Consensus 93 ~--~i~it~G~~~al~~~~~~~-~~~gd~vlv~~p~y~~~~~~~~~---~g~~~~~v~~~~~~~~-------------~~ 153 (387)
T PRK08960 93 E--RILVTPGGSGALLLASSLL-VDPGKHWLLADPGYPCNRHFLRL---VEGAAQLVPVGPDSRY-------------QL 153 (387)
T ss_pred h--hEEEccCcHHHHHHHHHHh-cCCCCEEEEcCCCCcchHHHHHh---cCCeEEEEecCcccCC-------------CC
Confidence 7 8999999999999999998 68899999999999888766554 4889999998654322 11
Q ss_pred chhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC---CCCC
Q 010538 182 LPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC---VTQP 258 (508)
Q Consensus 182 d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~---g~~~ 258 (508)
|++.++ +++ .++++++++++++||||.++|.+++.++++ +|+++|+++++|+++.. +..+
T Consensus 154 d~~~l~--~~~------~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~---------~~~~~~~~li~De~Y~~~~~~~~~ 216 (387)
T PRK08960 154 TPALVE--RHW------NADTVGALVASPANPTGTLLSRDELAALSQ---------ALRARGGHLVVDEIYHGLTYGVDA 216 (387)
T ss_pred CHHHHH--HHh------CccceEEEEECCCCCCCcCcCHHHHHHHHH---------HHHHcCCEEEEEccccccccCCCC
Confidence 678888 544 456789999999999999999888777765 45559999999998753 1112
Q ss_pred CCCCCCC-CcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhH
Q 010538 259 PDLSKYP-VDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLS 335 (508)
Q Consensus 259 ~d~~~~~-~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~ 335 (508)
..+...+ ..+++.|++|.+| ++| +||+++++++++.+...... +..+ .+...
T Consensus 217 ~~~~~~~~~vi~~~S~SK~~g-~~GlRiG~~~~~~~~~~~~~~~~~~-----------------------~~~~-~s~~~ 271 (387)
T PRK08960 217 ASVLEVDDDAFVLNSFSKYFG-MTGWRLGWLVAPPAAVPELEKLAQN-----------------------LYIS-ASTPA 271 (387)
T ss_pred CChhhccCCEEEEeecccccC-CcccEEEEEEcCHHHHHHHHHHHhh-----------------------hccC-CCHHH
Confidence 2222222 3478899999998 658 99999999887766543110 1112 23333
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEe-cCCCCCcccCCCCceEEEEeeCCCCCccCH
Q 010538 336 IASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIY-GTYTSEVSYHDTGSMVSFNLKRPDGSWFGY 414 (508)
Q Consensus 336 ~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 414 (508)
..++.++++-..+..+...++.+.+.++.+.+.|++. ++.+. .|.+ +.++++++++.. .+.
T Consensus 272 q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-------~~~~~~~p~g--------~~f~~~~~~~~~---~~~ 333 (387)
T PRK08960 272 QHAALACFEPETLAILEARRAEFARRRDFLLPALREL-------GFGIAVEPQG--------AFYLYADISAFG---GDA 333 (387)
T ss_pred HHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHhc-------CCcCCcCCCe--------eEEEEEeccccC---CCH
Confidence 3333334431001235666777888888898999875 44442 2322 688888886521 123
Q ss_pred HHHHHH-HhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHH
Q 010538 415 REVEKL-ASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRC 493 (508)
Q Consensus 415 ~~l~~~-L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~ 493 (508)
.++.+. ++++||.+.+|..|.... .++++|++++. +.+++...++
T Consensus 334 ~~~~~~ll~~~gi~v~pg~~f~~~~--------------------------------~~~~iRi~~~~--~~~~l~~al~ 379 (387)
T PRK08960 334 FAFCRHFLETEHVAFTPGLDFGRHQ--------------------------------AGQHVRFAYTQ--SLPRLQEAVE 379 (387)
T ss_pred HHHHHHHHHhCCEEEcCchHhCCCC--------------------------------CCCeEEEEecC--CHHHHHHHHH
Confidence 346655 467899999987653211 14689999995 5667666666
Q ss_pred hhhhhh
Q 010538 494 SSFDFV 499 (508)
Q Consensus 494 ~~~~~~ 499 (508)
.+++++
T Consensus 380 ~l~~~~ 385 (387)
T PRK08960 380 RIARGL 385 (387)
T ss_pred HHHHHH
Confidence 666544
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-26 Score=235.73 Aligned_cols=323 Identities=16% Similarity=0.091 Sum_probs=228.5
Q ss_pred CCCeeeeCCCCCCC-CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHH
Q 010538 39 NGTVYLDHAGATLY-SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALK 117 (508)
Q Consensus 39 ~~~iyld~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~ 117 (508)
+++++|+.+....+ ++.+.+++.+...... ..|+. . ...++|+.+|++++++++ +|++|+|+++++.
T Consensus 24 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~-----~~y~~----~-~~~~lr~aia~~~~~~~~--~I~it~G~~~al~ 91 (353)
T PRK05387 24 AKLIKLNTNENPYPPSPKVLEAIRAALGDDL-----RLYPD----P-NADALRQAIAAYYGLDPE--QVFVGNGSDEVLA 91 (353)
T ss_pred cceeeccCCCCCCCCCHHHHHHHHHHhhhhh-----hcCCC----C-cHHHHHHHHHHHhCCCHH--HEEEcCCHHHHHH
Confidence 57899999887654 5556666543322111 11211 1 136789999999999998 8999999999999
Q ss_pred HHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCC
Q 010538 118 LVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP 197 (508)
Q Consensus 118 ~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~ 197 (508)
+++.++ .++|+.|+++...|+.+..+ ++..|++++.+|.+++..+ |+++++ +
T Consensus 92 ~~~~~l-~~~gd~vlv~~P~y~~~~~~---~~~~g~~~~~v~~~~~~~~---------------d~~~l~--~------- 143 (353)
T PRK05387 92 HAFLAF-FNHDRPLLFPDITYSFYPVY---AGLYGIPYEEIPLDDDFSI---------------DVEDYL--R------- 143 (353)
T ss_pred HHHHHh-cCCCCEEEEeCCCHHHHHHH---HHHcCCEEEEeecCCCCCC---------------CHHHHH--h-------
Confidence 999998 68899999998777655544 4456999999998765444 577776 1
Q ss_pred CCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC-CCC-CCCC-CCCCCcEEEEecc
Q 010538 198 AGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC-VTQ-PPDL-SKYPVDFVVMSFY 274 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~-g~~-~~d~-~~~~~D~~~~S~~ 274 (508)
.+++|++++++||||.++|.+++.++++. + +++++|+|+++.. +.. ...+ ...+..+++.|++
T Consensus 144 ---~~~~v~~~~P~NPtG~~~~~~~~~~l~~~---------~--~~~~livDe~y~~~~~~~~~~~~~~~~~~i~~~S~S 209 (353)
T PRK05387 144 ---PNGGIIFPNPNAPTGIALPLAEIERILAA---------N--PDSVVVIDEAYVDFGGESAIPLIDRYPNLLVVQTFS 209 (353)
T ss_pred ---cCCEEEEeCCCCCCCCCCCHHHHHHHHHh---------C--CCcEEEEeCcccccCCcchHHHHhhCCCEEEEEehh
Confidence 34788999999999999999999999985 1 3999999998752 111 1111 1224469999999
Q ss_pred ccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChH
Q 010538 275 KIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVP 352 (508)
Q Consensus 275 K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~ 352 (508)
|.+| .+| +||++.+++.++.+..... .+...+.+.....++..+++. ....+
T Consensus 210 K~~~-~~GlR~G~~~~~~~~~~~l~~~~~-----------------------~~~~~~~~~~~q~~~~~~l~~--~~~~~ 263 (353)
T PRK05387 210 KSRS-LAGLRVGFAIGHPELIEALNRVKN-----------------------SFNSYPLDRLAQAGAIAAIED--EAYFE 263 (353)
T ss_pred Hhhc-chhhhceeeecCHHHHHHHHHhhc-----------------------cCCCCCcCHHHHHHHHHHhcC--HHHHH
Confidence 9998 447 8999999888776654310 011223445555555555542 11256
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCC
Q 010538 353 AICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGC 432 (508)
Q Consensus 353 ~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~ 432 (508)
+.++++.+.++++.+.|++. ++++. ++. ++++++.+++. +..++.+.|.++||.++.
T Consensus 264 ~~~~~~~~~~~~l~~~L~~~-------g~~~~-~~~--------~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~-- 320 (353)
T PRK05387 264 ETRAKVIATRERLVEELEAL-------GFEVL-PSK--------ANFVFARHPSH-----DAAELAAKLRERGIIVRH-- 320 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHC-------CCeEC-CCc--------CcEEEEECCCC-----CHHHHHHHHHHCCEEEEE--
Confidence 77888899999999999886 56654 322 67888887643 334588889999999974
Q ss_pred CCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 433 FCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 433 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
|..+. ..+++|+|++ +.+++++++++|+++++
T Consensus 321 -~~~~~--------------------------------~~~~iRis~~---~~~~~~~~~~~L~~~~~ 352 (353)
T PRK05387 321 -FNKPR--------------------------------IDQFLRITIG---TDEEMEALVDALKEILA 352 (353)
T ss_pred -CCCCC--------------------------------CCCeEEEEeC---CHHHHHHHHHHHHHHhh
Confidence 21110 1578999998 78999999999988753
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-26 Score=239.95 Aligned_cols=348 Identities=16% Similarity=0.073 Sum_probs=242.5
Q ss_pred CCeeeeCCCCCCCCHHHHHHHHHHhhcccc--CCCCCccchhhhhhHHHHH-HHHHHHHHcCCCCCCceEEEcCChHHHH
Q 010538 40 GTVYLDHAGATLYSELQMEAIFRDFTTNVY--GNPHSQSDISLATCDIVRA-AREQVLDYFNASMKDYKCIFTSGATAAL 116 (508)
Q Consensus 40 ~~iyld~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~r~~la~~~~~~~~~~~i~~t~g~t~al 116 (508)
+.+-| .++.++++|.+.+++...+ ...+ ++|++.+..+....+.+++ +++.+++++|++.. .|++++ +|+|+
T Consensus 20 ~~~~~-~~~~~~~~~~v~~a~~~~~-~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~--~v~~~s-gt~a~ 94 (402)
T cd00378 20 ETLEL-IASENFTSPAVMEAMGSDL-TNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEYA--NVQPHS-GSQAN 94 (402)
T ss_pred hCeee-eccCCcCCHHHHHHhcccc-cccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCce--eeecCC-cHHHH
Confidence 44444 3667777999988876533 2233 5666554444444444454 78889999999866 566654 57899
Q ss_pred HHHHhhcCCCCCCeEEEecccccchHHHHHH--HHhcCCeEEEEccCC---ccCccccccccccccccccchhhhhcCCC
Q 010538 117 KLVGEAFPWSHQSSYMYTMENHNSVLGIREY--ALSQGAAAFAIDVEE---AVDNDGLSESLVTSTKISLLPIQRRKGAS 191 (508)
Q Consensus 117 ~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~--~~~~G~~v~~v~~~~---~~~~~~l~~~~~~~~~~~~d~~~l~~~~~ 191 (508)
.+++.++ .++|++|+++..+|+++...... ++..|.++..++++. ++.+ |+++++ ++
T Consensus 95 ~~~l~~l-~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i---------------d~~~l~--~~ 156 (402)
T cd00378 95 LAVYFAL-LEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLI---------------DYDALE--KM 156 (402)
T ss_pred HHHHHHh-cCCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCc---------------CHHHHH--HH
Confidence 9999999 78899999999898876543221 445688777777653 2344 688888 55
Q ss_pred CCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC-----CCCCCCCCC
Q 010538 192 FPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ-----PPDLSKYPV 266 (508)
Q Consensus 192 l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~-----~~d~~~~~~ 266 (508)
+. .++++++++++++| |...|+++|.++|++ +|+++++|++|+.|.. +.++. ++
T Consensus 157 i~-----~~~~~~v~~~~~~~--~~~~~~~~I~~l~~~------------~~~~li~D~a~~~g~~~~g~~~~~~~--~~ 215 (402)
T cd00378 157 AL-----EFKPKLIVAGASAY--PRPIDFKRFREIADE------------VGAYLLVDMAHVAGLVAGGVFPNPLP--GA 215 (402)
T ss_pred HH-----hCCCCEEEecCccc--CCCcCHHHHHHHHHh------------cCCEEEEEccchhhhhhcccCCCccc--CC
Confidence 42 24678888877654 677899999999998 9999999999866542 33444 67
Q ss_pred cEEEEeccccccCCCcceEEEEec-hhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHH
Q 010538 267 DFVVMSFYKIFGYPTGLGALIMRN-DAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNL 345 (508)
Q Consensus 267 D~~~~S~~K~~g~P~G~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~ 345 (508)
|++++|+||+++||.| |+++.++ ++.+++...... ...+++....++++..++..
T Consensus 216 dv~~~s~sK~l~G~~g-g~i~~~~~~~~~~l~~~~~~-----------------------~~~~~~~~~~~~a~~~al~~ 271 (402)
T cd00378 216 DVVTTTTHKTLRGPRG-GLILTRKGELAKKINSAVFP-----------------------GLQGGPHLHVIAAKAVALKE 271 (402)
T ss_pred cEEEeccccCCCCCCc-eEEEeccHHHHHHHHHHhCc-----------------------cccCCchHHHHHHHHHHHHH
Confidence 9999999998866876 7777776 777665433111 11244555667776767765
Q ss_pred HHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCC
Q 010538 346 INSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSG 425 (508)
Q Consensus 346 ~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~g 425 (508)
+...+.+++.+++.++++++.+.|.++ +++++..+.. ++++++.+++.. .+...+.+.|+++|
T Consensus 272 ~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~~-------~~~v~v~~~~~~---~~~~~~~~~l~~~g 334 (402)
T cd00378 272 ALEPEFKAYAKQVVENAKALAEALKER-------GFKVVSGGTD-------NHLVLVDLRPKG---ITGKAAEDALEEAG 334 (402)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhC-------CCeEeecCCC-------CeEEEEeCCccC---CCHHHHHHHHHHcC
Confidence 544356788899999999999999886 5776643222 788989886421 12345778889999
Q ss_pred CeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCC----CHHHHHHHHHhhhhhhhh
Q 010538 426 IQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMS----TFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 426 I~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~----t~eev~~l~~~~~~~~~~ 501 (508)
|.++.+....... +.....++|++++..+ +.+|++.+++.|+++++.
T Consensus 335 I~v~~~~~p~~~~-----------------------------~~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~~~~ 385 (402)
T cd00378 335 ITVNKNTLPWDPS-----------------------------SPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALKD 385 (402)
T ss_pred cEEcCCcCCCCCC-----------------------------CCCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence 9998754322110 0112568999998865 799999999999987654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-26 Score=234.04 Aligned_cols=321 Identities=17% Similarity=0.153 Sum_probs=228.2
Q ss_pred CCCeeeeCCC-CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHH
Q 010538 39 NGTVYLDHAG-ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALK 117 (508)
Q Consensus 39 ~~~iyld~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~ 117 (508)
++.|.|..+. ..++||.+++++.+. ..... .|... . .+++|+.+|++++++++ +|++|+|+++++.
T Consensus 19 ~~~i~l~~~~~~~~~~~~~~~a~~~~-~~~~~-----~y~~~----~-~~~lr~~ia~~~~~~~~--~i~~~~G~~~~l~ 85 (346)
T TIGR01141 19 KEVIKLNSNENPFGPPPKAKEALRAE-ADKLH-----RYPDP----D-PAELKQALADYYGVDPE--QILLGNGSDEIIE 85 (346)
T ss_pred CceEEccCCCCCCCCCHHHHHHHHHh-HHHhh-----cCCCC----C-HHHHHHHHHHHhCcChH--HEEEcCCHHHHHH
Confidence 5688887655 444577777776543 22111 11110 1 26789999999999888 8999999999999
Q ss_pred HHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCC
Q 010538 118 LVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP 197 (508)
Q Consensus 118 ~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~ 197 (508)
.++.++ ..+|++|+++...|+.+ ...++..|++++.+|++.++.+ |+++++ +++
T Consensus 86 ~~~~~l-~~~gd~v~~~~p~y~~~---~~~~~~~g~~~~~~~~~~~~~~---------------d~~~l~--~~~----- 139 (346)
T TIGR01141 86 LLIRAF-LEPGDAVLVPPPTYSMY---EISAKIHGAEVVKVPLDEDGQL---------------DLEDIL--VAI----- 139 (346)
T ss_pred HHHHHh-cCCCCEEEEcCCCHHHH---HHHHHHcCCeEEEeccCCCCCC---------------CHHHHH--Hhc-----
Confidence 999888 57889999888666533 3345567999999998766544 678888 443
Q ss_pred CCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC---CCCCC-CCCCCcEEEEec
Q 010538 198 AGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT---QPPDL-SKYPVDFVVMSF 273 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~---~~~d~-~~~~~D~~~~S~ 273 (508)
++++++|++++++||||.++|++++.++++. ++ +++++++|++|+.-. .+.+. ...+.++++.|+
T Consensus 140 -~~~~~~v~l~~p~NptG~~~~~~~~~~l~~~---------~~-~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~i~~~S~ 208 (346)
T TIGR01141 140 -DDKPKLVFLCSPNNPTGNLLSRSDIEAVLER---------TP-EDALVVVDEAYGEFSGEPSTLPLLAEYPNLIVLRTL 208 (346)
T ss_pred -CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHh---------CC-CCcEEEEECchhhhcCCccHHHHHhhCCCEEEEehh
Confidence 4678999999999999999999999999995 34 599999999987211 11111 112345778999
Q ss_pred cccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcCh
Q 010538 274 YKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTV 351 (508)
Q Consensus 274 ~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~ 351 (508)
+|++| ++| +|++++++++++.+++.... .+.+.+.+.++..+++... .+
T Consensus 209 sK~~g-~~G~r~G~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~l~~~~--~~ 259 (346)
T TIGR01141 209 SKAFG-LAGLRIGYAIANAEIIDALNKVRAP--------------------------FNLSRLAQAAAIAALRDDD--FI 259 (346)
T ss_pred hHhhh-chhhhceeeecCHHHHHHHHhccCC--------------------------CCCCHHHHHHHHHHhCCHH--HH
Confidence 99997 446 79999998887776654111 1123333333333443321 36
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccC
Q 010538 352 PAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTG 431 (508)
Q Consensus 352 ~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g 431 (508)
+++.+++.++++++++.|+++ +++++..+ . ++++++.+++ + ..++.+.|.++||.+++|
T Consensus 260 ~~~~~~~~~~~~~l~~~L~~~------~g~~~~~~-~--------g~~~~~~~~~-~-----~~~~~~~L~~~gI~v~~g 318 (346)
T TIGR01141 260 EKTVEEINAERERLYDGLKKL------PGLEVYPS-D--------ANFVLIRFPR-D-----ADALFEALLEKGIIVRDL 318 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHhc------CCCEECCC-c--------CCEEEEecCC-C-----HHHHHHHHHHCCeEEEeC
Confidence 788899999999999999886 36765432 2 6889998864 2 245888898999999998
Q ss_pred CCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhh
Q 010538 432 CFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 432 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~ 496 (508)
..+. .. ++++|+|++ |.+|++++++.|+
T Consensus 319 ~~f~---------------------------------~~-~~~iRls~~---~~~~i~~~~~~l~ 346 (346)
T TIGR01141 319 NSYP---------------------------------GL-PNCLRITVG---TREENDRFLAALR 346 (346)
T ss_pred CCcC---------------------------------CC-CCeEEEecC---CHHHHHHHHHHhC
Confidence 6431 11 578999987 8999999998763
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=234.28 Aligned_cols=348 Identities=14% Similarity=0.082 Sum_probs=229.4
Q ss_pred CCCeeeeCCCCC--CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCC--CC-CCceEEEcCChH
Q 010538 39 NGTVYLDHAGAT--LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA--SM-KDYKCIFTSGAT 113 (508)
Q Consensus 39 ~~~iyld~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~--~~-~~~~i~~t~g~t 113 (508)
.+.++|+.+... .+++.+.+++.+..... ....|........+.+++.+.+++.+|. ++ + +|++|+|++
T Consensus 39 ~~~i~l~~g~~~~~~p~~~~~~~~~~~~~~~----~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~--~I~it~Ga~ 112 (405)
T PRK06207 39 GRPVDFSHGDVDAHEPTPGAFELFSAGVERG----GVQAYTEYRGDADIRELLAARLAAFTGAPVDAAD--ELIITPGTQ 112 (405)
T ss_pred CCceecCCcCCCCCCCCHHHHHHHHHHHhcC----CCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC--CEEEeCCcH
Confidence 778999987755 34566666665533211 0112221122345566666677777785 55 6 899999999
Q ss_pred HHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCC
Q 010538 114 AALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFP 193 (508)
Q Consensus 114 ~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~ 193 (508)
+++.+++.++ ..+|++|++....|+.+. ..++..|.+++.++++....-+ .-..|+++++ +++
T Consensus 113 ~al~~~~~~l-~~~Gd~Vlv~~P~y~~~~---~~~~~~g~~v~~v~~~~~~~~~----------~~~~d~~~l~--~~~- 175 (405)
T PRK06207 113 GALFLAVAAT-VARGDKVAIVQPDYFANR---KLVEFFEGEMVPVQLDYLSADK----------RAGLDLDQLE--EAF- 175 (405)
T ss_pred HHHHHHHHHh-cCCCCEEEEeCCCchhHH---HHHHHcCCEEEEEeccccCccc----------CCCcCHHHHH--Hhh-
Confidence 9999999998 688999999887776554 4445569999999875210000 0012688888 555
Q ss_pred CCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCCCCCCCC----C
Q 010538 194 ERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQPPDLSKY----P 265 (508)
Q Consensus 194 ~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d~~~~----~ 265 (508)
.+++++|++++++||||.+++.+++.++++ +|+++|++||+|++++. +..+..+... +
T Consensus 176 -----~~~~k~v~l~~P~NPTG~~~s~e~l~~l~~---------~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~ 241 (405)
T PRK06207 176 -----KAGVRVFLFSNPNNPAGVVYSAEEIAQIAA---------LARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPE 241 (405)
T ss_pred -----hhcCeEEEECCCCCCCCcCCCHHHHHHHHH---------HHHHcCCEEEEeccccccccCCCCCCchhcCCCCcC
Confidence 346799999999999999999777766665 45559999999999874 2222222221 2
Q ss_pred CcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHH
Q 010538 266 VDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGF 343 (508)
Q Consensus 266 ~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al 343 (508)
.-+++.|++|.|+ .+| +||+++++++++.+..... ....++ +.....++..++
T Consensus 242 ~vi~i~SfSK~~~-lpGlRiG~ii~~~~l~~~~~~~~~-----------------------~~~~~~-~~~~q~a~~~~l 296 (405)
T PRK06207 242 NVITIMGPSKTES-LSGYRLGVAFGSPAIIDRMEKLQA-----------------------IVSLRA-AGYSQAVLRTWF 296 (405)
T ss_pred cEEEEecchhhcc-CcccceEEEEcCHHHHHHHHHHHh-----------------------HhccCC-CHHHHHHHHHHH
Confidence 2388999999998 447 8999999888776654310 001111 222233333333
Q ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHh-
Q 010538 344 NLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLAS- 422 (508)
Q Consensus 344 ~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~- 422 (508)
+.- ...+++..+++.+.++++.+.|+++ +++.+..|.+ +.++|++++... ++..++.+.|.
T Consensus 297 ~~~-~~~~~~~~~~~~~~r~~l~~~L~~~------~~~~~~~p~g--------g~fl~~~l~~~~---~~~~~~~~~l~~ 358 (405)
T PRK06207 297 SEP-DGWMKDRIARHQAIRDDLLRVLRGV------EGVFVRAPQA--------GSYLFPRLPRLA---VSLHDFVKILRL 358 (405)
T ss_pred hCc-HHHHHHHHHHHHHHHHHHHHHHhcC------CCceecCCCe--------eEEEEEeCcccC---CCHHHHHHHHHH
Confidence 210 0114566677778888898888876 3566655543 789999986421 23345777774
Q ss_pred hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 423 LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 423 ~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
++||.+.+|..|... ..+++|||++. +.++++..++.|.++++-
T Consensus 359 ~~gV~v~pG~~F~~~---------------------------------~~~~~Ris~~~--~~~~l~~al~rl~~~l~~ 402 (405)
T PRK06207 359 QAGVIVTPGTEFSPH---------------------------------TADSIRLNFSQ--DHAAAVAAAERIAQLIER 402 (405)
T ss_pred hcCEEEeCchHhCCC---------------------------------CCCeEEEEecC--CHHHHHHHHHHHHHHHHH
Confidence 789999998755321 25789999995 688898888888877653
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-26 Score=253.51 Aligned_cols=327 Identities=12% Similarity=0.038 Sum_probs=239.9
Q ss_pred hhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChH----HHHHHHHhhcCCCCCC----eEEEecccccchHHHHHHHHh
Q 010538 79 SLATCDIVRAAREQVLDYFNASMKDYKCIFTSGAT----AALKLVGEAFPWSHQS----SYMYTMENHNSVLGIREYALS 150 (508)
Q Consensus 79 ~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t----~al~~~~~~l~~~~g~----~vl~~~~~h~s~~~~~~~~~~ 150 (508)
.....+++.++++++++++|+ + .|+|++++| +++++++.++...+|+ +||++..+|.+....+.+
T Consensus 563 ~~g~~~~~~~~r~~la~i~g~--~--~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~~--- 635 (993)
T PLN02414 563 AQGYQEMFEDLGDLLCEITGF--D--SFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAAM--- 635 (993)
T ss_pred HHHHHHHHHHHHHHHHHHhCC--C--eEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHHH---
Confidence 345678899999999999999 4 799999999 8999999999434366 899999999998876655
Q ss_pred cCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCC
Q 010538 151 QGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNP 230 (508)
Q Consensus 151 ~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~ 230 (508)
.|++++.||.+.++.+ |+++++ +.++++ +++|++|++++++|.+|...|+++|.+++|+
T Consensus 636 ~G~~vv~v~~d~~G~v---------------Dle~L~--~~i~~~---~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~- 694 (993)
T PLN02414 636 CGMKIVVVGTDAKGNI---------------NIEELR--KAAEAH---KDNLAALMVTYPSTHGVYEEGIDEICDIIHD- 694 (993)
T ss_pred CCCEEEEeccCCCCCc---------------CHHHHH--HHHhcc---CCCeEEEEEECCCccccccchHHHHHHHHHH-
Confidence 5999999999877777 688898 666422 3578999999999999999999999999998
Q ss_pred ccccccCCCCCCCeEEEEeccccCCC-CCCCCCCCCCcEEEEeccccccCCCc-----ceEEEEechhHhhhccccccCc
Q 010538 231 ERILEISPFSKGRWMVLIDAAKGCVT-QPPDLSKYPVDFVVMSFYKIFGYPTG-----LGALIMRNDAAKLLKNTYFSGG 304 (508)
Q Consensus 231 ~~~~~~~~~~~~g~~vivD~a~~~g~-~~~d~~~~~~D~~~~S~~K~~g~P~G-----~G~l~~~~~~~~~l~~~~~g~~ 304 (508)
+|+++++|++|..+. ...+..++++||+++|.||+|++|.| +|++++++++ .|.+.|+.
T Consensus 695 -----------~Galv~vDgAq~~a~~~l~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L----~p~lPg~~ 759 (993)
T PLN02414 695 -----------NGGQVYMDGANMNAQVGLTSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHL----APFLPSHP 759 (993)
T ss_pred -----------cCCEEEEEecCHHhccCcCCccccCCCEEEecCCccCCcCcccCCCCeeeEEEchhh----cccCCCCc
Confidence 999999999999888 55566789999999999997776764 9999999854 45555442
Q ss_pred eEEecccchhhhhhccCccccccCCCCChh---HHHHHHHHHHHHHhcC---hHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 010538 305 TVAASIADIDFVKRRQGVEELFEDGTASFL---SIASIRHGFNLINSLT---VPAICRHIASLGMYVRKVLLSLRHENGA 378 (508)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~---~~~~l~~al~~~~~~g---~~~i~~~~~~l~~~l~~~L~~l~~~~~~ 378 (508)
.+... .+..+ ......||.+.. +...+-.|..++...| +.+..++...+++|+++.|.+..
T Consensus 760 v~~~~----~~~~r----~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~~----- 826 (993)
T PLN02414 760 VVPTG----GIPRP----EKTQPLGTISAAPWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGHY----- 826 (993)
T ss_pred cccCC----Ccccc----cCCCCcCCccchhhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhhC-----
Confidence 11100 01000 011124665542 2245555666665555 55559999999999999997742
Q ss_pred ceEEEecCCCCCcccCCCCceEEEEeeCCC-CCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcC
Q 010538 379 DVCTIYGTYTSEVSYHDTGSMVSFNLKRPD-GSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAG 457 (508)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~ 457 (508)
++.+.++.+.. .+-..+.+...+ ...++..++.+.|.++||.... ..+ +
T Consensus 827 -~~~~~~~~~~~------~hEfv~~~~~l~~~~g~~~~di~krL~d~Gihapt-~~~-p--------------------- 876 (993)
T PLN02414 827 -PVLFRGKNGTC------AHEFIIDLRPFKNTAGIEPEDVAKRLMDYGFHAPT-MSW-P--------------------- 876 (993)
T ss_pred -CccccCCCCCe------eeeEEEeccccccccCCCHHHHHHHHHHcCcEEee-ecc-c---------------------
Confidence 34443332210 122223333221 1114456799999999998654 211 1
Q ss_pred CccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhhh
Q 010538 458 HVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQF 504 (508)
Q Consensus 458 ~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~~ 504 (508)
..+.+||+++.++|.+|+|+++++|..+....+.
T Consensus 877 -------------v~~~lmiepTE~~skeelDrf~~al~~i~~e~~~ 910 (993)
T PLN02414 877 -------------VPGTLMIEPTESESKAELDRFCDALISIREEIAD 910 (993)
T ss_pred -------------cCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 1678999999999999999999999998877664
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=234.78 Aligned_cols=335 Identities=10% Similarity=0.017 Sum_probs=223.0
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC------CCC-CCceEEEcC
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN------ASM-KDYKCIFTS 110 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------~~~-~~~~i~~t~ 110 (508)
++.+.|+.+.... +++.+.+++.+ ...... ...|.. .....+|+.+|++++ +++ + +|++|+
T Consensus 32 ~~~i~l~~g~p~~~~~~~~~~~~~~-~~~~~~---~~~y~~-----~G~~~lr~aia~~~~~~~g~~~~~~~--~I~it~ 100 (399)
T PRK07681 32 HKMIDLSIGNPDMPPADFVREEMVH-TANQKE---SYGYTL-----SGIQEFHEAVTEYYNNTHNVILNADK--EVLLLM 100 (399)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHH-HHhccc---cCCCCC-----CCcHHHHHHHHHHHHHHhCCCCCCCC--eEEECC
Confidence 5678887776543 34444444433 322110 011110 113456666666654 566 5 899999
Q ss_pred ChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCC
Q 010538 111 GATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGA 190 (508)
Q Consensus 111 g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~ 190 (508)
|+++++.+++.++ .++|+.|+++...|+.+... ++..|++++.+|++.++.+ .+|+++++ +
T Consensus 101 G~~~al~~~~~~~-~~~Gd~Vlv~~P~y~~~~~~---~~~~G~~~~~v~~~~~~~~-------------~~d~~~l~--~ 161 (399)
T PRK07681 101 GSQDGLVHLPMVY-ANPGDIILVPDPGYTAYETG---IQMAGATSYYMPLKKENDF-------------LPDLELIP--E 161 (399)
T ss_pred CcHHHHHHHHHHh-CCCCCEEEECCCCccchHHH---HHhcCCEEEEEecCCCCCC-------------cCCHHHHH--H
Confidence 9999999999998 68899999998777766554 4456999999998754322 12678887 4
Q ss_pred CCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCCCCCCC---
Q 010538 191 SFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQPPDLSK--- 263 (508)
Q Consensus 191 ~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d~~~--- 263 (508)
++ .+++++|++++++||||.+++.+++.++++ +|+++|++||+|++++. +..+..+..
T Consensus 162 ~~------~~~~k~v~l~~P~NPTG~~~s~~~~~~i~~---------~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~ 226 (399)
T PRK07681 162 EI------ADKAKMMILNFPGNPVPAMAHEDFFKEVIA---------FAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPG 226 (399)
T ss_pred hc------cccceEEEEeCCCCCcCcCCCHHHHHHHHH---------HHHHcCeEEEEeccchhheeCCCCCCChhhCCC
Confidence 44 357899999999999999999777766665 45559999999999873 222222221
Q ss_pred -CCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHH
Q 010538 264 -YPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIR 340 (508)
Q Consensus 264 -~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~ 340 (508)
.+..+++.|++|.|| .+| +||+++++++++.+..... ....+.+.....++.
T Consensus 227 ~~~~~i~~~S~SK~~~-~~GlRiG~~i~~~~l~~~~~~~~~------------------------~~~~~~s~~~q~~~~ 281 (399)
T PRK07681 227 AKEVGVEINSLSKSYS-LAGSRIGYMIGNEEIVRALTQFKS------------------------NTDYGVFLPIQKAAC 281 (399)
T ss_pred CcccEEEEeecccccC-CccceeEEEecCHHHHHHHHHHHh------------------------hcccCCCHHHHHHHH
Confidence 134588899999998 558 8999999888776654310 011122333333334
Q ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHH
Q 010538 341 HGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKL 420 (508)
Q Consensus 341 ~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 420 (508)
.+++.-. ..+++.++++++.++++.+.|++. ++++..|.+ +.++|+++++. .+..++.+.
T Consensus 282 ~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~p~~--------g~f~~~~l~~~----~~~~~~~~~ 341 (399)
T PRK07681 282 AALRNGA-AFCEKNRGIYQERRDTLVDGFRTF-------GWNVDKPAG--------SMFVWAEIPKG----WTSLSFAYA 341 (399)
T ss_pred HHHhCcH-HHHHHHHHHHHHHHHHHHHHHHHC-------CCcccCCCe--------eeEEEEECCCC----CCHHHHHHH
Confidence 3443211 124666777888889999999875 566654543 78899888642 223346666
Q ss_pred Hhh-CCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 421 ASL-SGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 421 L~~-~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
|.+ +||.+.+|..|... .++++|||++ .+.++++.+++.|++.
T Consensus 342 l~~~~gv~v~pg~~f~~~---------------------------------~~~~iRis~~--~~~~~~~~~l~~l~~~ 385 (399)
T PRK07681 342 LMDRANVVVTPGHAFGPH---------------------------------GEGFVRIALV--QDEEVLQQAVENIRNS 385 (399)
T ss_pred HHHhCCEEEeCChhhCcC---------------------------------CCCeEEEEec--CCHHHHHHHHHHHHHh
Confidence 654 89999998755321 1578999998 4789999999998873
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-25 Score=229.41 Aligned_cols=334 Identities=13% Similarity=0.039 Sum_probs=231.8
Q ss_pred chHHHHHHhhccCCCCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCC
Q 010538 25 SIDQIRATEFKRLENGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKD 103 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~ 103 (508)
.+....+ +.....++.++|+.+.... ++|.+++++.+ .. .. ..|+. . ...++|++++++++++++
T Consensus 39 ~~~~~~~-~~~~~~~~~i~l~~n~~p~~~~~~v~~a~~~-~~-----~~-~~Yp~-~----~~~~lr~~ia~~~~~~~~- 104 (380)
T PLN03026 39 PFEVLSA-QLGRKPEDIVKLDANENPYGPPPEVLEALGN-MK-----FP-YVYPD-P----ESRRLRAALAEDSGLESE- 104 (380)
T ss_pred ChHHHHH-HhCCCccceEEccCCCCCCCCCHHHHHHHHh-hH-----hh-ccCCC-C----CHHHHHHHHHHHhCcChh-
Confidence 4554444 4332225789999986543 46666665432 11 01 11111 1 145789999999999988
Q ss_pred ceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccch
Q 010538 104 YKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLP 183 (508)
Q Consensus 104 ~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~ 183 (508)
+|++|+|+++++.+++.++ .++|++|+++...|+.+ ...++..|++++.+|.+.+..+ |+
T Consensus 105 -~I~~t~Ga~~~i~~~~~~~-~~~gd~Vlv~~P~y~~y---~~~~~~~g~~~~~v~~~~~~~~---------------d~ 164 (380)
T PLN03026 105 -NILVGCGADELIDLLMRCV-LDPGDKIIDCPPTFGMY---VFDAAVNGAEVIKVPRTPDFSL---------------DV 164 (380)
T ss_pred -hEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChHHH---HHHHHHcCCEEEEeecCCCCCc---------------CH
Confidence 8999999999999999988 57899999888655433 3344567999999998654444 57
Q ss_pred hhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC---CCCC
Q 010538 184 IQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT---QPPD 260 (508)
Q Consensus 184 ~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~---~~~d 260 (508)
++++ +++. ++++++|++++++||||.++|.+++.++++. . ++||+|+++..-. ....
T Consensus 165 ~~l~--~~~~-----~~~~~~v~l~~P~NPTG~~~~~~~l~~l~~~------------~-~~vi~DeaY~~~~~~~~~~~ 224 (380)
T PLN03026 165 PRIV--EAVE-----THKPKLLFLTSPNNPDGSIISDDDLLKILEL------------P-ILVVLDEAYIEFSTQESRMK 224 (380)
T ss_pred HHHH--HHHh-----ccCCcEEEEeCCCCCCCCCCCHHHHHHHHhc------------C-CEEEEECcchhhcCCcchHH
Confidence 7887 4441 4578999999999999999999999999985 3 8999999985311 1111
Q ss_pred -CCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHH
Q 010538 261 -LSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIA 337 (508)
Q Consensus 261 -~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~ 337 (508)
+...+..+++.|++|.|| ++| +||++++++.++.+..... ....+.....
T Consensus 225 ~~~~~~~viv~~SfSK~~g-laGlRiGy~~~~~~~i~~l~~~~~--------------------------~~~~~~~~q~ 277 (380)
T PLN03026 225 WVKKYDNLIVLRTFSKRAG-LAGLRVGYGAFPLSIIEYLWRAKQ--------------------------PYNVSVAAEV 277 (380)
T ss_pred HHHhCCCEEEEecchHhhc-CccccceeeecCHHHHHHHHHhcC--------------------------CCCCCHHHHH
Confidence 222345688999999999 768 8999999888776553311 1123344445
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHH
Q 010538 338 SIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREV 417 (508)
Q Consensus 338 ~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l 417 (508)
++.++++.. ..+++.++++.+.++++.+.|+++. ++.+ .++. ++++++++++. .+..++
T Consensus 278 aa~~aL~~~--~~~~~~~~~~~~~r~~l~~~L~~~~------~~~~-~p~~--------~~f~~~~~~~~----~~~~~~ 336 (380)
T PLN03026 278 AACAALSNP--KYLEDVKNALVEERERLFGLLKEVP------FLEP-YPSD--------ANFILCRVTSG----RDAKKL 336 (380)
T ss_pred HHHHHhhCH--HHHHHHHHHHHHHHHHHHHHHHHCC------CCeE-CCCC--------CeEEEEECCCC----CCHHHH
Confidence 555555421 1256778888999999999998872 3444 2332 78999987642 233457
Q ss_pred HHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhh
Q 010538 418 EKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFD 497 (508)
Q Consensus 418 ~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~ 497 (508)
.+.|.++||.|+.+.. .+ .++++|||++ +.++++++++++++
T Consensus 337 ~~~l~~~gI~v~~~~~--~~---------------------------------~~~~lRis~~---~~~~~~~l~~al~~ 378 (380)
T PLN03026 337 KEDLAKMGVMVRHYNS--KE---------------------------------LKGYIRVSVG---KPEHTDALMEALKQ 378 (380)
T ss_pred HHHHHHCCeEEEECCC--CC---------------------------------CCCEEEEecC---CHHHHHHHHHHHHH
Confidence 8888899999987532 10 1578999999 88999999999876
Q ss_pred h
Q 010538 498 F 498 (508)
Q Consensus 498 ~ 498 (508)
+
T Consensus 379 ~ 379 (380)
T PLN03026 379 L 379 (380)
T ss_pred h
Confidence 4
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-25 Score=230.69 Aligned_cols=319 Identities=17% Similarity=0.105 Sum_probs=225.6
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHH
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALK 117 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~ 117 (508)
++.++||.+.... +|+.+++++.+.. ... ..|+. . ...++|+.+++++|++++ +|++|+|+++++.
T Consensus 43 ~~~i~l~~~~~~~~~~~~~~~a~~~~~-~~~-----~~Y~~----~-~~~~Lr~aia~~~~v~~e--~I~it~Gs~~ai~ 109 (370)
T PRK09105 43 EGAVFLNANECPLGPSPAARDAAARSA-ALS-----GRYDL----E-LEDDLRTLFAAQEGLPAD--HVMAYAGSSEPLN 109 (370)
T ss_pred CCcEEecCCCCCCCCCHHHHHHHHHHH-HHh-----cCCCC----c-hHHHHHHHHHHHhCcChh--hEEEcCChHHHHH
Confidence 6789999998754 4677777765433 111 11221 1 156788999999999998 8999999999999
Q ss_pred HHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCC
Q 010538 118 LVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP 197 (508)
Q Consensus 118 ~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~ 197 (508)
+++.++ ..+|++|++++..|+.+.. .++..|.+++.+|.+.+..+ |+++++ +.
T Consensus 110 ~~~~~l-~~~gd~Vli~~P~y~~~~~---~~~~~g~~~~~v~~~~~~~~---------------d~~~l~--~~------ 162 (370)
T PRK09105 110 YAVLAF-TSPTAGLVTADPTYEAGWR---AADAQGAPVAKVPLRADGAH---------------DVKAML--AA------ 162 (370)
T ss_pred HHHHHH-cCCCCEEEEeCCChHHHHH---HHHHcCCeEEEecCCCCCCC---------------CHHHHH--hc------
Confidence 999998 5788999999877766644 44556999999998754444 577777 32
Q ss_pred CCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC-CCCC--CCCCCCCCc-EEEEec
Q 010538 198 AGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC-VTQP--PDLSKYPVD-FVVMSF 273 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~-g~~~--~d~~~~~~D-~~~~S~ 273 (508)
.++++++++++++||||.++|.+++.++++. ++ +++++|+|+++.. +..+ .++.....+ +++.|+
T Consensus 163 -~~~~~~v~l~nP~NPTG~~~~~~~l~~l~~~---------~~-~~~~lIvDEaY~~f~~~~s~~~~~~~~~~vi~~~Sf 231 (370)
T PRK09105 163 -DPNAGLIYICNPNNPTGTVTPRADIEWLLAN---------KP-AGSVLLVDEAYIHFSDAPSVVDLVAQRKDLIVLRTF 231 (370)
T ss_pred -CCCCCEEEEeCCCCCCCcCcCHHHHHHHHHh---------CC-CCcEEEEECchHHhccCcchHHHHhhCCCEEEEecc
Confidence 2467999999999999999999999999873 32 5999999999842 2111 222222334 666799
Q ss_pred cccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcCh
Q 010538 274 YKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTV 351 (508)
Q Consensus 274 ~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~ 351 (508)
+|+|| ++| +||++++++.++.+.+. +. ...+.....+..++++. ...+
T Consensus 232 SK~~g-~~GlRiG~~v~~~~~i~~l~~~--~~-------------------------~~~~~~~~~aa~~~L~~--~~~~ 281 (370)
T PRK09105 232 SKLYG-MAGMRLGLAAARPDLLAKLARF--GH-------------------------NPLPVPAAAAGLASLRD--PKLV 281 (370)
T ss_pred cHhhc-CCccceeeeecCHHHHHHHHhc--CC-------------------------CCcCHHHHHHHHHHHhC--HHHH
Confidence 99999 668 99999998887766543 11 11333333333444432 1235
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccC
Q 010538 352 PAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTG 431 (508)
Q Consensus 352 ~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g 431 (508)
+...+++.+.++++.+.|+++ ++++..+. +++++++++ . +..++.+.|.++||.++.
T Consensus 282 ~~~~~~~~~~r~~l~~~L~~~-------g~~~~~~~---------~~f~~~~~~-~-----~~~~l~~~L~~~gI~v~~- 338 (370)
T PRK09105 282 PQRRAENAAVREDTIAWLKKK-------GYKCTPSQ---------ANCFMVDVK-R-----PAKAVADAMAKQGVFIGR- 338 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-------CCCcCCCC---------CcEEEEeCC-C-----CHHHHHHHHHHCCcEEec-
Confidence 677788899999999999886 56655432 556656653 1 223578888888999832
Q ss_pred CCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 432 CFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 432 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
.| .. .++++|+|++ +.++++++++++++++
T Consensus 339 -~~-~~---------------------------------~~~~~Ris~~---~~~~~~~l~~al~~~~ 368 (370)
T PRK09105 339 -SW-PI---------------------------------WPNWVRVTVG---SEEEMAAFRSAFAKVM 368 (370)
T ss_pred -CC-CC---------------------------------CCCeEEEEcC---CHHHHHHHHHHHHHHh
Confidence 22 11 1578999998 7899999999998875
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-25 Score=227.85 Aligned_cols=334 Identities=16% Similarity=0.108 Sum_probs=227.2
Q ss_pred CCCeeeeCCCCC----CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHH
Q 010538 39 NGTVYLDHAGAT----LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATA 114 (508)
Q Consensus 39 ~~~iyld~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~ 114 (508)
++.-|+|.++.. +.+|.+++++.+.. .. ++.....+..........+++++.++++++.+ + .|++++|++
T Consensus 14 ~g~~~id~~~~~~~g~~~~~~v~~a~~~~~-~~-~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~-~--~i~~~~G~~- 87 (360)
T TIGR00858 14 DGRRLLNFSSNDYLGLASHPEVIQAAQQGA-EQ-YGAGSTASRLVSGNSPLHEELEEELAEWKGTE-A--ALLFSSGYL- 87 (360)
T ss_pred CCceEEecccCCcccCCCCHHHHHHHHHHH-Hh-cCCCCCCcCcccCCcHHHHHHHHHHHHHhCCC-C--EEEECchHH-
Confidence 344455554432 24577888775543 32 22221111111223456778999999999863 4 688887755
Q ss_pred HHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCC
Q 010538 115 ALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 115 al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
++..++.++ .++|++|++....|+++....+ ..|++++.++.. |++.++ +.+++
T Consensus 88 ~~~~~l~~~-~~~gd~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~--------------------d~~~l~--~~~~~ 141 (360)
T TIGR00858 88 ANVGVISAL-VGKGDLILSDALNHASLIDGCR---LSGARVRRYRHN--------------------DVEHLE--RLLEK 141 (360)
T ss_pred HHHHHHHHh-CCCCCEEEEEccccHHHHHHHH---hcCCceEEecCC--------------------CHHHHH--HHHHH
Confidence 444566776 5789999999888887765543 458888877641 345555 44421
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCC---------CCCCC
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPD---------LSKYP 265 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d---------~~~~~ 265 (508)
. .++++++|++.+++|+||...|+++|.++|++ +|+++|+|++|+.+..+.+ +...+
T Consensus 142 ~--~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~------------~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~ 207 (360)
T TIGR00858 142 N--RGERRKLIVTDGVFSMDGDIAPLPQLVALAER------------YGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEP 207 (360)
T ss_pred c--ccCCCeEEEEeCCccCCCCCcCHHHHHHHHHH------------cCcEEEEECcccccCcCCCCCchHHhcCCCccC
Confidence 1 11467999999999999999999999999998 8999999999987643322 22236
Q ss_pred CcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHH
Q 010538 266 VDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNL 345 (508)
Q Consensus 266 ~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~ 345 (508)
.|+++.|+||+|+ +.| |++++++++++.+.+.... ..+ .++.+..+++++.+++++
T Consensus 208 ~~i~i~s~sK~~~-~~g-G~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~~~~~a~~~al~~ 263 (360)
T TIGR00858 208 VDIQVGTLSKALG-SYG-AYVAGSQALIDYLINRART---------------------LIF-STALPPAVAAAALAALEL 263 (360)
T ss_pred CcEEEEechhhhh-ccC-cEEEcCHHHHHHHHHhCcc---------------------cee-cCCCCHHHHHHHHHHHHH
Confidence 7899999999999 777 9999888877655432110 001 122344556677778887
Q ss_pred HHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCC
Q 010538 346 INSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSG 425 (508)
Q Consensus 346 ~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~g 425 (508)
+.. .+.+.+++.++++++.+.|+++ ++++..+ . ++++++.+++. .+..++.+.|.++|
T Consensus 264 ~~~--~~~~~~~~~~~~~~l~~~L~~~-------~~~~~~~-~--------~~~~~~~~~~~----~~~~~~~~~l~~~g 321 (360)
T TIGR00858 264 IQE--EPWRREKLLALIARLRAGLEAL-------GFTLMPS-C--------TPIVPVIIGDN----ASALALAEELQQQG 321 (360)
T ss_pred Hhh--CHHHHHHHHHHHHHHHHHHHHc-------CCccCCC-C--------CCEEEEEeCCH----HHHHHHHHHHHHCC
Confidence 654 3678899999999999999886 4555422 2 67888887542 12345888888999
Q ss_pred CeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhh
Q 010538 426 IQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 426 I~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~ 496 (508)
|.+.++..+..+. ..+++|+|++.++|.+|+++++++|+
T Consensus 322 I~v~~~~~~~~~~--------------------------------~~~~iRis~~~~~~~~~i~~~l~~l~ 360 (360)
T TIGR00858 322 IFVGAIRPPTVPA--------------------------------GTSRLRLTLSAAHTPGDIDRLAEALK 360 (360)
T ss_pred eeEeeeCCCCCCC--------------------------------CCceEEEEEcCCCCHHHHHHHHHhhC
Confidence 9998754322110 14689999999999999999998764
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-25 Score=227.74 Aligned_cols=331 Identities=14% Similarity=0.115 Sum_probs=233.1
Q ss_pred chHHHHHHhhccCCCCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCC
Q 010538 25 SIDQIRATEFKRLENGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKD 103 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~ 103 (508)
....+++ +|+. ++.+.|+.+.... +++.+.+++.+.. ......|. ....++|+.+|++++++++
T Consensus 18 ~~~~~~~-~~~~--~~~i~l~~n~~~~~~~~~v~~a~~~~~-~~~~~~p~----------~g~~~lr~~ia~~~~~~~~- 82 (359)
T PRK03158 18 SIEEVKR-EYGL--EKIVKLASNENPYGPSPKVKEAIAAHL-DELALYPD----------GYAPELRTKVAKHLGVDEE- 82 (359)
T ss_pred CHHHHHH-hcCC--CceEEecCCCCCCCCCHHHHHHHHHHH-HHhhcCCC----------CcHHHHHHHHHHHhCCCHH-
Confidence 5666777 7874 4788887665433 4666666654432 22111111 1256789999999999888
Q ss_pred ceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccch
Q 010538 104 YKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLP 183 (508)
Q Consensus 104 ~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~ 183 (508)
+|++|+|+++++.+++.++ .++|+.|+++...|+. ....+...|.++..+|.+ +..+ |+
T Consensus 83 -~i~~t~G~~~~l~~~~~~~-~~~gd~v~~~~p~y~~---~~~~~~~~g~~~~~~~~~-~~~~---------------d~ 141 (359)
T PRK03158 83 -QLLFGAGLDEVIQMISRAL-LNPGTNTVMAEPTFSQ---YRHNAIIEGAEVREVPLK-DGGH---------------DL 141 (359)
T ss_pred -HEEECCCHHHHHHHHHHHH-hCCCCEEEEcCCCHHH---HHHHHHHcCCeEEEEecC-CCCc---------------CH
Confidence 8999999999999999988 6789999988755554 444455679999999986 3333 57
Q ss_pred hhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC----CCC
Q 010538 184 IQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT----QPP 259 (508)
Q Consensus 184 ~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~----~~~ 259 (508)
++++ +++ +++++++++++++||||.++|.+++.++++. ++ +|+++|+|+++.... .+.
T Consensus 142 ~~l~--~~~------~~~~~~v~i~~p~NPtG~~~~~~~l~~~~~~---------~~-~~~~ii~De~y~~~~~~~~~~~ 203 (359)
T PRK03158 142 EAML--KAI------DEQTKIVWICNPNNPTGTYVNHEELLSFLES---------VP-SHVLVVLDEAYYEYVTAEDYPD 203 (359)
T ss_pred HHHH--Hhc------CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHh---------CC-CCcEEEEECchHhhcCCccccc
Confidence 7887 444 4578999999999999999999999999985 33 599999999986422 111
Q ss_pred CC---CCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChh
Q 010538 260 DL---SKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFL 334 (508)
Q Consensus 260 d~---~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 334 (508)
.+ ...+..+++.|++|.|| .+| +||+++++++++.+..... ....+..
T Consensus 204 ~~~~~~~~~~vi~~~S~SK~~g-~~GlRiG~~v~~~~~~~~~~~~~~--------------------------~~~~~~~ 256 (359)
T PRK03158 204 TLPLLEKYENLIVLRTFSKAYG-LAALRVGYGIASEELIEKLNIARP--------------------------PFNTTRI 256 (359)
T ss_pred HHHHHHhcCCEEEEEechHhhc-CcchhhehhcCCHHHHHHHHHhcC--------------------------CCCCCHH
Confidence 11 12345688899999999 657 6999999988776654310 0122344
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCH
Q 010538 335 SIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGY 414 (508)
Q Consensus 335 ~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 414 (508)
...++..+++. ...++.+.+..++.++++.+.|++. ++.++ ++. +++++++++. +.
T Consensus 257 ~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~-~~~--------g~~i~~~~~~------~~ 312 (359)
T PRK03158 257 AQYAAIAALED--QAFLKECVEKNAEGLEQYYAFCKEY-------GLFYY-PSQ--------TNFIFVDTGR------DA 312 (359)
T ss_pred HHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHC-------CCeeC-CCc--------CcEEEEECCC------CH
Confidence 44444444432 1124566667778888888888775 45554 322 6788887632 22
Q ss_pred HHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHh
Q 010538 415 REVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCS 494 (508)
Q Consensus 415 ~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~ 494 (508)
.++.+.|.++||.+++|..+.. ++++||+++ +.+|+++++++
T Consensus 313 ~~~~~~l~~~gv~v~~g~~f~~-----------------------------------~~~iRi~~~---~~~~~~~l~~a 354 (359)
T PRK03158 313 NELFEALLKKGYIVRSGAALGF-----------------------------------PTGVRITIG---LKEQNDKIIEL 354 (359)
T ss_pred HHHHHHHHHCCeEEeeCCCCCC-----------------------------------CCeEEEecC---CHHHHHHHHHH
Confidence 3578888889999999875421 578999988 99999999999
Q ss_pred hhhh
Q 010538 495 SFDF 498 (508)
Q Consensus 495 ~~~~ 498 (508)
|+++
T Consensus 355 l~~~ 358 (359)
T PRK03158 355 LKEL 358 (359)
T ss_pred HHHh
Confidence 9876
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-25 Score=229.81 Aligned_cols=337 Identities=16% Similarity=0.124 Sum_probs=229.6
Q ss_pred CCCCCCCCchHHHHHHhhccCCCCCeeeeCCCC-CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHH
Q 010538 17 YGYPNAPKSIDQIRATEFKRLENGTVYLDHAGA-TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLD 95 (508)
Q Consensus 17 ~~~~~~~~~~~~~r~~~f~~~~~~~iyld~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~ 95 (508)
|..+. .....++ +|.....++++|+.+.. -.++|.+++++.+... .....|. . ..+++|+.+|+
T Consensus 16 ~~~~~---~~~~~~~-~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~-~~~~y~~-----~-----~~~~lr~~ia~ 80 (361)
T PRK00950 16 YVPGK---SKEEIAR-EYGIDPESIIKLGSNENPLGPSPKAVEAIEKELS-KIHRYPE-----P-----DAPELREALSK 80 (361)
T ss_pred CCCCC---CHHHHHH-HhCCCccceEEccCCCCCCCCCHHHHHHHHHHHH-hhcCCCC-----C-----CHHHHHHHHHH
Confidence 54444 5666777 88754347899976643 2346667776654332 2111121 1 13778999999
Q ss_pred HcCCCCCCceEEE-cCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccc
Q 010538 96 YFNASMKDYKCIF-TSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLV 174 (508)
Q Consensus 96 ~~~~~~~~~~i~~-t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~ 174 (508)
+++++++ +|++ |+|+++++.+++.++ .++|+.|+++...|+. +...++..|++++.+|.+.+..+
T Consensus 81 ~~~~~~~--~i~~~~~Ga~~~i~~~~~~~-~~~gd~vlv~~p~y~~---~~~~~~~~g~~~~~~~~~~~~~~-------- 146 (361)
T PRK00950 81 YTGVPVE--NIIVGGDGMDEVIDTLMRTF-IDPGDEVIIPTPTFSY---YEISAKAHGAKPVYAKREEDFSL-------- 146 (361)
T ss_pred HhCCCHH--HEEEeCCCHHHHHHHHHHHh-cCCCCEEEEcCCChHH---HHHHHHHcCCEEEEeecCCCCCc--------
Confidence 9999988 8988 789999999999888 6788999988755543 33445667999999986654344
Q ss_pred cccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC
Q 010538 175 TSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC 254 (508)
Q Consensus 175 ~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~ 254 (508)
++++++ +++ +++++++++++++||||.++|.+++.+++++ +|+++|+|++|..
T Consensus 147 -------~~~~l~--~~~------~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~------------~~~~li~De~y~~ 199 (361)
T PRK00950 147 -------DVDSVL--NAI------TEKTKVIFLCTPNNPTGNLIPEEDIRKILES------------TDALVFVDEAYVE 199 (361)
T ss_pred -------CHHHHH--HHh------ccCCCEEEEeCCCCCCCCCcCHHHHHHHHHH------------CCcEEEEECchhh
Confidence 578888 544 3568999999999999999999999999997 8999999999964
Q ss_pred CCCCCCC----CCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccC
Q 010538 255 VTQPPDL----SKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFED 328 (508)
Q Consensus 255 g~~~~d~----~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (508)
.. ..+. ...+.-+++.|++|.+| .+| +|++++++++++.+......
T Consensus 200 ~~-~~~~~~~~~~~~~vi~~~S~SK~~g-~~GlRiG~~~~~~~~~~~~~~~~~~-------------------------- 251 (361)
T PRK00950 200 FA-EYDYTPLALEYDNLIIGRTFSKVFG-LAGLRIGYGFVPEWLIDYYMRAKTP-------------------------- 251 (361)
T ss_pred hC-ccchHHHHHhcCCEEEEEeehHhhc-CchhhcchhcCCHHHHHHHHHhcCC--------------------------
Confidence 22 1111 11123477889999998 557 89999998887665543100
Q ss_pred CCCChhHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCC
Q 010538 329 GTASFLSIASIRHGFNLINSL-TVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRP 407 (508)
Q Consensus 329 gt~~~~~~~~l~~al~~~~~~-g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 407 (508)
...+.....++..+++ .. .+++..++++++++++.+.|. +++. ++. ++++++++++
T Consensus 252 ~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~~l~----------~~~~-~~~--------~~~i~~~~~~- 308 (361)
T PRK00950 252 FSLTRLSQAAAIAALS---DKEYIEKSIEHGIKSREYLYNELP----------FKVY-PSE--------ANFVLVDVTP- 308 (361)
T ss_pred CCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhhcC----------eeEC-CCc--------ceEEEEECCC-
Confidence 0122233333333332 21 145566666667777665553 3333 222 6888888843
Q ss_pred CCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHH
Q 010538 408 DGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFED 487 (508)
Q Consensus 408 ~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ee 487 (508)
.+..++.+.|.++||.+++|..+.. ..++++|+|++ +.+|
T Consensus 309 ----~~~~~~~~~l~~~gv~v~~~~~f~~---------------------------------~~~~~lRis~~---~~~~ 348 (361)
T PRK00950 309 ----MTAKEFCEELLKRGVIVRDCTSFRG---------------------------------LGDYYIRVSIG---TFEE 348 (361)
T ss_pred ----CCHHHHHHHHHHCCEEEeeCCccCC---------------------------------CCCCeEEEECC---CHHH
Confidence 2345688888889999998754311 12578999998 8899
Q ss_pred HHHHHHhhhhhhh
Q 010538 488 AKVNRCSSFDFVN 500 (508)
Q Consensus 488 v~~l~~~~~~~~~ 500 (508)
+++++++|+++++
T Consensus 349 ~~~l~~~L~~il~ 361 (361)
T PRK00950 349 NERFLEILKEIVE 361 (361)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988753
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-25 Score=229.73 Aligned_cols=335 Identities=16% Similarity=0.092 Sum_probs=227.8
Q ss_pred CCCeeeeCCCC---CC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHH
Q 010538 39 NGTVYLDHAGA---TL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATA 114 (508)
Q Consensus 39 ~~~iyld~~~~---~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~ 114 (508)
++.-|+|..+. +. ++|.+++++.+.+. . +..+...+..........+++++.++++++. ++ .+++++ +++
T Consensus 37 ~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~-~-~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~-~~--~i~~~~-g~~ 110 (385)
T PRK05958 37 DGRRMLNFASNDYLGLARHPRLIAAAQQAAR-R-YGAGSGGSRLVTGNSPAHEALEEELAEWFGA-ER--ALLFSS-GYA 110 (385)
T ss_pred CCceEEEeeCCCcccCCCCHHHHHHHHHHHH-h-cCCCCCCcCcccCCcHHHHHHHHHHHHHhCC-Cc--EEEECc-HHH
Confidence 45666666544 33 46788888766543 2 2211111111112345678899999999995 34 455554 556
Q ss_pred HHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCC
Q 010538 115 ALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 115 al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
++..++.++ .++|++|+++...|+++..... ..|.+++.++.. |+++++ +.+++
T Consensus 111 ~~~~~l~~~-~~~gd~V~~~~~~~~~~~~~~~---~~g~~~~~~~~~--------------------d~~~l~--~~i~~ 164 (385)
T PRK05958 111 ANLAVLTAL-AGKGDLIVSDKLNHASLIDGAR---LSRARVRRYPHN--------------------DVDALE--ALLAK 164 (385)
T ss_pred HHHHHHHHh-CCCCCEEEEeCccCHHHHHHHH---hcCCceEEeCCC--------------------CHHHHH--HHHHh
Confidence 666676776 6889999999999988775543 358888888753 244555 44421
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCC---------CCCCCC
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPP---------DLSKYP 265 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~---------d~~~~~ 265 (508)
..+.+.++++.++.|++|.+.|+++|.++|++ +|+++|+|++|+.|..+. ++...+
T Consensus 165 ---~~~~~~lvi~~~~~~~~G~~~~l~~i~~ia~~------------~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~ 229 (385)
T PRK05958 165 ---WRAGRALIVTESVFSMDGDLAPLAELVALARR------------HGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEP 229 (385)
T ss_pred ---ccCCCeEEEEEecccCCCCcCCHHHHHHHHHH------------hCCEEEEECcccccccCCCCCchHHhhCCCCCC
Confidence 11246888888999999999999999999998 999999999998654321 222223
Q ss_pred CcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHH
Q 010538 266 VDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNL 345 (508)
Q Consensus 266 ~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~ 345 (508)
.++++.|+||+++ +.| |+++.++++.+.+..... .. ...++.+..+++++.+++++
T Consensus 230 ~~i~~~s~sK~~~-~~G-g~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~~~~~aa~~aal~~ 285 (385)
T PRK05958 230 DVILVGTLGKALG-SSG-AAVLGSETLIDYLINRAR---------------------PF-IFTTALPPAQAAAARAALRI 285 (385)
T ss_pred ceEEEEechhhcc-cCC-cEEEcCHHHHHHHHHhCc---------------------cc-eecCCCCHHHHHHHHHHHHH
Confidence 4588999999998 767 888888777654432100 00 11223455667777788887
Q ss_pred HHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCC
Q 010538 346 INSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSG 425 (508)
Q Consensus 346 ~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~g 425 (508)
+.+. +.+.+++.++++++.+.|+++ ++++..+. +++++|.+++. .+..++.+.|.++|
T Consensus 286 ~~~~--~~~~~~~~~~~~~l~~~L~~~-------~~~~~~~~---------~~~~~~~~~~~----~~~~~~~~~l~~~g 343 (385)
T PRK05958 286 LRRE--PERRERLAALIARLRAGLRAL-------GFQLMDSQ---------SAIQPLIVGDN----ERALALAAALQEQG 343 (385)
T ss_pred HhcC--HHHHHHHHHHHHHHHHHHHHc-------CCCcCCCC---------CCEEEEEeCCH----HHHHHHHHHHHHCC
Confidence 7553 678899999999999999886 45554332 67888887542 12345788888899
Q ss_pred CeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 426 IQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 426 I~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
|.++++..+..+ ...+++|||++.++|.+|++++++.|+++
T Consensus 344 I~v~~~~~~~~~--------------------------------~~~~~lRis~~~~~~~~~i~~~l~~l~~~ 384 (385)
T PRK05958 344 FWVGAIRPPTVP--------------------------------AGTSRLRITLTAAHTEADIDRLLEALAEA 384 (385)
T ss_pred ceEecccCCCCC--------------------------------CCCceEEEEecCCCCHHHHHHHHHHHHhc
Confidence 999874321111 01468999999999999999999998765
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-25 Score=208.59 Aligned_cols=352 Identities=11% Similarity=0.057 Sum_probs=264.6
Q ss_pred CCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCC
Q 010538 47 AGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWS 126 (508)
Q Consensus 47 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~ 126 (508)
.+...+++++++++....+ + ..+++..++++++++-+...|..... +..++..+++.||..++..+ ..
T Consensus 23 PGPsnl~~~V~~A~~~~~l---------g-h~sPe~~qIm~~v~egikyVFkT~n~-~tf~isgsGh~g~E~al~N~-le 90 (385)
T KOG2862|consen 23 PGPSNLSGRVQEAMSRPSL---------G-HMSPEFVQIMDEVLEGIKYVFKTANA-QTFVISGSGHSGWEAALVNL-LE 90 (385)
T ss_pred CCCcCCCHHHHHhhcCCcc---------c-cCCHHHHHHHHHHHHHHHHHhccCCC-ceEEEecCCcchHHHHHHhh-cC
Confidence 4455568888877643221 1 23455778889999999999987554 37888888999999999888 67
Q ss_pred CCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEE
Q 010538 127 HQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFA 206 (508)
Q Consensus 127 ~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~ 206 (508)
+||+|++....--+ ..+...+++.|++|..|+.+..... .++.+. +.|. ..++++|+
T Consensus 91 Pgd~vLv~~~G~wg-~ra~D~~~r~ga~V~~v~~~~G~~~---------------~le~i~--~~ls-----qh~p~~vf 147 (385)
T KOG2862|consen 91 PGDNVLVVSTGTWG-QRAADCARRYGAEVDVVEADIGQAV---------------PLEEIT--EKLS-----QHKPKAVF 147 (385)
T ss_pred CCCeEEEEEechHH-HHHHHHHHhhCceeeEEecCcccCc---------------cHHHHH--HHHH-----hcCCceEE
Confidence 89988877532211 3467788899999999988765444 466676 5553 36789999
Q ss_pred EeCCCCCCccccC-HHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCcceE
Q 010538 207 FPSECNFSGSRFN-LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGA 285 (508)
Q Consensus 207 ~~~~~n~tG~~~~-i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G~G~ 285 (508)
++|..+.||...| ++.+.++||+ |+++++||++.+.|..++.+.+|++|+.....+|.+++|+|++.
T Consensus 148 v~hgdsSTgV~q~~~~~~g~lc~k------------~~~lllVD~VaSlggt~F~mDewgVDvaytgSQKaL~aP~GLsi 215 (385)
T KOG2862|consen 148 VTHGDSSTGVLQDLLAISGELCHK------------HEALLLVDTVASLGGTEFEMDEWGVDVAYTGSQKALGAPAGLSI 215 (385)
T ss_pred EEecCccccccchHHHHHHHHhhc------------CCeEEEEechhhcCCccceehhhcccEEEecchhhcCCCCCcce
Confidence 9999999999999 7788888997 99999999999999999999999999999999999999999999
Q ss_pred EEEechhHhhhccccccCceEEeccc---chhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHH
Q 010538 286 LIMRNDAAKLLKNTYFSGGTVAASIA---DIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLG 362 (508)
Q Consensus 286 l~~~~~~~~~l~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~ 362 (508)
+..++++.++++..=.+ ...+.++ ...|+.. ..+-+.+.-|+++..++++.+||+.+.+.|++++.+++++++
T Consensus 216 isfS~ka~~~~~~rK~~--~~~~yFd~~~~~~~wgc--~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s 291 (385)
T KOG2862|consen 216 ISFSDKALEAIRDRKTK--PVSFYFDILRLGNFWGC--DGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHREMS 291 (385)
T ss_pred eecCHHHHHHHhhccCC--ceEEEEeHHhhcchhcc--CCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998877533111 1111111 1122211 223366778999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhC-CCeeccCCCCCchHHHh
Q 010538 363 MYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLS-GIQLRTGCFCNPGACAK 441 (508)
Q Consensus 363 ~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~-gI~v~~g~~~~~~~~~~ 441 (508)
++++..|+++ |++....... .+...+..+.++-. +|.+++..++..+ ++.+..|....
T Consensus 292 ~~l~~~l~~~-------GLq~fv~~e~----~rlptvttv~vp~g----vDw~dVv~~~~~~~~vei~gglg~~------ 350 (385)
T KOG2862|consen 292 KWLKLSLEAL-------GLQLFVVDEE----LRLPTVTTVKVPYG----VDWKDVVAYAMSHYVVEIGGGLGPT------ 350 (385)
T ss_pred HHHHHHHHHh-------CccceecChh----hccCcceeeecCCC----CCHHHHHHHHHHhcCEEeccccCCC------
Confidence 9999999997 6666543332 23355556666533 4556788888776 66676664322
Q ss_pred hcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCC-CCCHHHHHHHHHhhhhhh
Q 010538 442 YLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGY-MSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 442 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~t~eev~~l~~~~~~~~ 499 (508)
.+..+||.+.. --+.+-|+..+++|+.-+
T Consensus 351 -----------------------------~gKv~RIGl~gcna~~e~i~~v~~ll~~al 380 (385)
T KOG2862|consen 351 -----------------------------VGKVFRIGLLGCNANVEYIDNVVELLKLAL 380 (385)
T ss_pred -----------------------------cccEEEEEEeeccCCcHHHHHHHHHHHHHH
Confidence 25689999664 458899999998877544
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-25 Score=234.32 Aligned_cols=349 Identities=15% Similarity=0.054 Sum_probs=239.8
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhcccc--CCCCCccchhhhhhHHHHH-HHHHHHHHcCCCCCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVY--GNPHSQSDISLATCDIVRA-AREQVLDYFNASMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~r~~la~~~~~~~~~~~i~~t~g~t~a 115 (508)
++.+.|+.+.+ ++++.+++++...+. +.+ +++++.+..+....+..++ +++.+++++|++.. .|++++ +|+|
T Consensus 25 ~~~~~l~~~~n-~~~~~v~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~--~i~~~s-gt~a 99 (416)
T PRK00011 25 EEHIELIASEN-FVSPAVMEAQGSVLT-NKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAEYA--NVQPHS-GSQA 99 (416)
T ss_pred hcCeeeecccC-cCCHHHHHHHhchhh-cccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCce--eeecCC-chHH
Confidence 56788886544 478999888755432 222 4555544444444555655 78899999999876 676665 4679
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHH--HHHhcCCeEEEEccCC-ccCccccccccccccccccchhhhhcCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIRE--YALSQGAAAFAIDVEE-AVDNDGLSESLVTSTKISLLPIQRRKGASF 192 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~--~~~~~G~~v~~v~~~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l 192 (508)
+.+++.++ .++|++|+++..+|+++..... .+...|.+++.++++. ++.+ |+++++ +++
T Consensus 100 l~~~l~~l-~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---------------d~~~l~--~~i 161 (416)
T PRK00011 100 NAAVYFAL-LKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLI---------------DYDEVE--KLA 161 (416)
T ss_pred HHHHHHHh-cCCCCEEEEeccccCCccccccccccccceeeEeecCcCcccCCc---------------CHHHHH--HHH
Confidence 99999998 7889999999999986542211 1233467888888763 3444 678888 555
Q ss_pred CCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC-----CCCCCCCCCc
Q 010538 193 PERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ-----PPDLSKYPVD 267 (508)
Q Consensus 193 ~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~-----~~d~~~~~~D 267 (508)
. .+++++|++++ +.+|...|+++|.++|++ +|+++++|++|+.|.. +.++. ++|
T Consensus 162 ~-----~~~~k~v~~~~--~~~~~~~~~~~I~~la~~------------~~~~livD~a~~~g~~~~g~~~~~~~--~~d 220 (416)
T PRK00011 162 L-----EHKPKLIIAGA--SAYSRPIDFKRFREIADE------------VGAYLMVDMAHIAGLVAAGVHPSPVP--HAD 220 (416)
T ss_pred H-----hcCCCEEEECC--CcCCCccCHHHHHHHHHH------------cCCEEEEECcchhcccccCccCCCCC--CCc
Confidence 2 13678888764 346778899999999998 8999999999987654 34444 689
Q ss_pred EEEEeccccccCCCcceEEEEe-chhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHH
Q 010538 268 FVVMSFYKIFGYPTGLGALIMR-NDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLI 346 (508)
Q Consensus 268 ~~~~S~~K~~g~P~G~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~ 346 (508)
++++|+||++++|.| |+++.+ +++.+.++..... ...+++....++++..++..+
T Consensus 221 i~~~S~~K~l~g~~g-g~i~~~~~~~~~~l~~~~~~-----------------------~~~~~~~~~~~aa~~~a~~~~ 276 (416)
T PRK00011 221 VVTTTTHKTLRGPRG-GLILTNDEELAKKINSAVFP-----------------------GIQGGPLMHVIAAKAVAFKEA 276 (416)
T ss_pred EEEecCCcCCCCCCc-eEEEeCCHHHHHHHHHHhCc-----------------------cccCCccHHHHHHHHHHHHHH
Confidence 999999998866876 888885 5776655433111 112344455666666565544
Q ss_pred HhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCC
Q 010538 347 NSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGI 426 (508)
Q Consensus 347 ~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI 426 (508)
.+.+++++.+++.++++++++.|+++ |+++..... .++++++.+++.. ++...+.+.|.++||
T Consensus 277 ~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~-------~~~~~~i~~~~~~---~~~~~~~~~L~~~GI 339 (416)
T PRK00011 277 LEPEFKEYAQQVVKNAKALAEALAER-------GFRVVSGGT-------DNHLVLVDLRSKG---LTGKEAEAALEEANI 339 (416)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhC-------CCeeeecCC-------CCeEEEEeCcccC---CCHHHHHHHHHHcCc
Confidence 44567889999999999999999886 577653111 2588888875321 233458889999999
Q ss_pred eeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCC----CCCHHHHHHHHHhhhhhhhh
Q 010538 427 QLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGY----MSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 427 ~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~t~eev~~l~~~~~~~~~~ 501 (508)
.++.+....... ....+..+|++... ..|.+|+++++++|++++.-
T Consensus 340 ~v~~~~~p~~~~-----------------------------~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~~~ 389 (416)
T PRK00011 340 TVNKNAVPFDPR-----------------------------SPFVTSGIRIGTPAITTRGFKEAEMKEIAELIADVLDN 389 (416)
T ss_pred EEccCcCCCCCC-----------------------------CCCCCCceEecCHHHhhcCcCHHHHHHHHHHHHHHHhc
Confidence 998643211100 00124569997643 35799999999999987654
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-25 Score=232.75 Aligned_cols=319 Identities=13% Similarity=0.078 Sum_probs=228.4
Q ss_pred CHHHHHHHHHHhhccccCCCC--CccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCe
Q 010538 53 SELQMEAIFRDFTTNVYGNPH--SQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSS 130 (508)
Q Consensus 53 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~ 130 (508)
+|.+++++.+.+ ..+..+++ +.+..+ .....++++.+|+++|++ .+++++|+++|+++++.++ ..+|+.
T Consensus 70 ~p~v~~a~~~~~-~~~~~~~~~s~~~~~~---~~~~~~le~~la~~~g~~----~~~~~~sG~~An~~~l~~l-~~~g~~ 140 (407)
T PRK07179 70 HPDIIKAQIAAL-QEEGDSLVMSAVFLHD---DSPKPQFEKKLAAFTGFE----SCLLCQSGWAANVGLLQTI-ADPNTP 140 (407)
T ss_pred CHHHHHHHHHHH-HHhCCCCCccccccCC---chHHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHh-CCCCCE
Confidence 677888876654 33333442 222222 234567778999999985 3578999999999999998 567899
Q ss_pred EEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCC
Q 010538 131 YMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSE 210 (508)
Q Consensus 131 vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~ 210 (508)
|+++..+|+++....+ ..|+++..++. . |++.++ +++++ ..+++|+++++
T Consensus 141 v~~~~~~h~s~~~~~~---~~g~~~~~~~~-----~---------------d~~~l~--~~l~~-----~~~~lV~v~~v 190 (407)
T PRK07179 141 VYIDFFAHMSLWEGVR---AAGAQAHPFRH-----N---------------DVDHLR--RQIER-----HGPGIIVVDSV 190 (407)
T ss_pred EEEECCcCHHHHHHHH---HCCCeEEEecC-----C---------------CHHHHH--HHHHh-----cCCeEEEECCC
Confidence 9999999988865443 35777665543 1 356666 44421 24689999999
Q ss_pred CCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCC---------CCCCCCCCcEEEEeccccccCCC
Q 010538 211 CNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQP---------PDLSKYPVDFVVMSFYKIFGYPT 281 (508)
Q Consensus 211 ~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~---------~d~~~~~~D~~~~S~~K~~g~P~ 281 (508)
+|+||.+.|+++|.++|++ +|+++|+|++|+.|... +++. .++|++++|+||++| +.
T Consensus 191 ~n~tG~i~pl~~I~~l~~~------------~~~~livDea~~~g~~g~~g~g~~~~~~~~-~~vdi~~~S~sK~~g-~~ 256 (407)
T PRK07179 191 YSTTGTIAPLADIVDIAEE------------FGCVLVVDESHSLGTHGPQGAGLVAELGLT-SRVHFITASLAKAFA-GR 256 (407)
T ss_pred CCCCCccccHHHHHHHHHH------------cCCEEEEECcccccCcCCCCCchHHhcCCC-CCCCEEEeechHhhh-cc
Confidence 9999999999999999998 89999999999876532 2222 247999999999999 54
Q ss_pred cceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHH
Q 010538 282 GLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASL 361 (508)
Q Consensus 282 G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l 361 (508)
+|++++++++++.+..... . ....+|++...++++.++++.+.. .+.+++++.++
T Consensus 257 -~G~l~~~~~~~~~~~~~~~---------------------~-~~~~~t~~~~~~aa~~aal~~~~~--~~~~~~~l~~~ 311 (407)
T PRK07179 257 -AGIITCPRELAEYVPFVSY---------------------P-AIFSSTLLPHEIAGLEATLEVIES--ADDRRARLHAN 311 (407)
T ss_pred -CeEEEeCHHHHHHHHHhCc---------------------C-eeeCCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHH
Confidence 7999998887665432100 0 112466667777778888888754 36678999999
Q ss_pred HHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHh
Q 010538 362 GMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAK 441 (508)
Q Consensus 362 ~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~ 441 (508)
++++++.|+++ ++++.++ ++++++.++... +...+.+.|.++||.++ .+|.+..
T Consensus 312 ~~~l~~~L~~~-------g~~v~~~----------~~i~~l~~~~~~----~~~~~~~~L~~~GI~~~--~~~~p~~--- 365 (407)
T PRK07179 312 ARFLREGLSEL-------GYNIRSE----------SQIIALETGSER----NTEVLRDALEERNVFGA--VFCAPAT--- 365 (407)
T ss_pred HHHHHHHHHHc-------CCCCCCC----------CCEEEEEeCCHH----HHHHHHHHHHHCCceEe--eecCCCC---
Confidence 99999999886 4555421 678888764321 12347788899999854 2333321
Q ss_pred hcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 442 YLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 442 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
....+.+|||++.++|.+|+++++++|+++++..
T Consensus 366 ---------------------------~~~~~~lRis~~~~~t~edi~~~~~~l~~~~~~~ 399 (407)
T PRK07179 366 ---------------------------PKNRNLIRLSLNADLTASDLDRVLEVCREARDEV 399 (407)
T ss_pred ---------------------------CCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhh
Confidence 0125789999999999999999999999887653
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-25 Score=227.26 Aligned_cols=327 Identities=13% Similarity=0.047 Sum_probs=229.8
Q ss_pred eCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcC
Q 010538 45 DHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFP 124 (508)
Q Consensus 45 d~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~ 124 (508)
-+-+.+++|+.+++++.+. .+++ . ...+..+++++.+++++|++ ++++|+|+|+|+++++.++
T Consensus 18 t~~g~s~~~~~v~~a~~~~-~~~~--------~---~~~~~~~~~~~~~a~~~g~~----~~~~~~g~t~al~~al~al- 80 (363)
T TIGR01437 18 TILGVSTVSDEVADAQKRG-AQNY--------F---EIKELVNKTGEYIANLLGVE----DAVIVSSASAGIAQSVAAV- 80 (363)
T ss_pred ecCCCCCCCHHHHHHHHHH-HhcC--------C---CHHHHHHHHHHHHHHhhCCC----eEEEEcCHHHHHHHHHHHH-
Confidence 4455666899999887654 3321 1 13467889999999999975 5799999999999999998
Q ss_pred CCCCC---------------eEEEecccccchH-HHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhc
Q 010538 125 WSHQS---------------SYMYTMENHNSVL-GIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRK 188 (508)
Q Consensus 125 ~~~g~---------------~vl~~~~~h~s~~-~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~ 188 (508)
.++|+ +||++..+++.+. .+...+...|+++++++.+. .+ |+++++
T Consensus 81 ~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~~~--~~---------------d~~~le- 142 (363)
T TIGR01437 81 ITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGYAN--EC---------------SAEQLE- 142 (363)
T ss_pred hcCCCcchhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcCCC--CC---------------CHHHHH-
Confidence 56676 8888775554442 22334555799999987642 23 688999
Q ss_pred CCCCCCCCCCCCCceEEE-EeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCc
Q 010538 189 GASFPERDPAGDAYNLFA-FPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVD 267 (508)
Q Consensus 189 ~~~l~~~~~~~~~t~lv~-~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D 267 (508)
+++ +++|++++ +++++|++|.+.|+++|.++||+ +|+++++|++|+.... .....++|
T Consensus 143 -~ai------~~~t~ai~~v~~~~~~~g~~~~~~~i~~~a~~------------~gi~vivD~a~~~~~~--~~~~~g~D 201 (363)
T TIGR01437 143 -AAI------TEKTAAILYIKSHHCVQKSMLSVEDAAQVAQE------------HNLPLIVDAAAEEDLQ--KYYRLGAD 201 (363)
T ss_pred -Hhc------ChhceEEEEEecCCCCcCCcCCHHHHHHHHHH------------cCCeEEEECCCCCchH--HHHHcCCC
Confidence 555 57778665 56778999999999999999998 9999999999973210 11245789
Q ss_pred EEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH
Q 010538 268 FVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN 347 (508)
Q Consensus 268 ~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~ 347 (508)
++++|+||++++|. .|+++.+++.++.+++...+. .+.++.|+ ..++++.++++++.
T Consensus 202 ~~~~S~~K~l~gp~-~G~l~~~~~~i~~~~~~~~~~-------------------~~~~~~~~---~~~~gl~aAl~~~~ 258 (363)
T TIGR01437 202 LVIYSGAKAIEGPT-SGLVLGKKKYIEWVKLQSKGI-------------------GRAMKVGK---ENILGLTAALEQYL 258 (363)
T ss_pred EEEEeCCcccCCCc-eEEEEEcHHHHHHHHhccCCC-------------------cceeccCH---HHHHHHHHHHHHHH
Confidence 99999999777798 699998888877665443322 22233444 33788888999888
Q ss_pred hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCC--
Q 010538 348 SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSG-- 425 (508)
Q Consensus 348 ~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~g-- 425 (508)
+.+.+.+.++.. .++++.+.|.++ ++++++.+..... ...-...+.|.... ..++..++.+.|.++|
T Consensus 259 ~~~~~~~~~~~~-~~~~l~~~L~~i------~g~~~~~~~~~~~-~~~~~~~v~~~~~~---~g~~~~~l~~~L~~~~~~ 327 (363)
T TIGR01437 259 STGKESGAEMVA-KLTPFIEALNTL------KGVSASIVQDEAG-RDIARAEIRFDESE---LGMTAADVVQALRQGEPA 327 (363)
T ss_pred ccCcccHHHHHH-HHHHHHHHHhcC------CCeEEEEecCCCC-CcCceEEEEEeccC---CCCCHHHHHHHHhcCCCC
Confidence 777777766655 466899999988 4788875432100 00001334444421 1145667999998877
Q ss_pred CeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 426 IQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 426 I~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
|.++. ++ ...+.+|+++.. ++++|++.++++|++++
T Consensus 328 I~~r~--~~-----------------------------------~~~~~~~l~~~~-~~~~e~~~~~~~l~~~~ 363 (363)
T TIGR01437 328 IYTRG--YK-----------------------------------ANEGIIEIDPRS-VTGGQLDIIVERIREIV 363 (363)
T ss_pred EEEee--ee-----------------------------------ecCCeEEEEeec-CCHHHHHHHHHHHHHhC
Confidence 55554 10 126789999996 56999999999998763
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=226.62 Aligned_cols=340 Identities=11% Similarity=0.031 Sum_probs=226.8
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC---CCCceEEEcCChHH
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS---MKDYKCIFTSGATA 114 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~---~~~~~i~~t~g~t~ 114 (508)
++.++|+.+.... +++.+.+++.+ ++... + ...|........+.+++++.+++.+|++ ++ +|++|+|+++
T Consensus 27 ~~~~~l~~g~~~~~~~~~~~~a~~~-~~~~~--~-~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~--~i~~t~G~~~ 100 (389)
T PRK05957 27 PGTISLGQGVVSYPPPPEAIEALNN-FLANP--E-NHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQ--AIVVTAGSNM 100 (389)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHH-HHhCC--C-CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC--eEEEeCChHH
Confidence 5789999887654 55556555533 33211 1 1123333334567788889999998974 45 7999999999
Q ss_pred HHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCC
Q 010538 115 ALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 115 al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
++..++.++ ..+|++|++++..|+.+... ++..|++++.+|.+.+..+ |++.++ +++
T Consensus 101 ~l~~~~~~~-~~~gd~Vlv~~P~y~~~~~~---~~~~g~~~~~v~~~~~~~~---------------d~~~l~--~~i-- 157 (389)
T PRK05957 101 AFMNAILAI-TDPGDEIILNTPYYFNHEMA---ITMAGCQPILVPTDDNYQL---------------QPEAIE--QAI-- 157 (389)
T ss_pred HHHHHHHHh-cCCCCEEEEeCCCCcCHHHH---HHhcCCEEEEeecCCCCCc---------------CHHHHH--Hhc--
Confidence 999999888 67899999998777665433 4457999999998755445 688898 555
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCHH---HHHHHHcCCccccccCCCCCCCeEEEEeccccCCC------CC-CCC-CC
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNLD---LINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT------QP-PDL-SK 263 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i~---~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~------~~-~d~-~~ 263 (508)
++++++|++++++||||.++|.+ +|.++|++ +|+++++|+++..-. .+ ..+ ..
T Consensus 158 ----~~~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~------------~~~~li~De~y~~~~~~~~~~~~~~~~~~~ 221 (389)
T PRK05957 158 ----TPKTRAIVTISPNNPTGVVYPEALLRAVNQICAE------------HGIYHISDEAYEYFTYDGVKHFSPGSIPGS 221 (389)
T ss_pred ----CcCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHH------------cCcEEEEeccchhccCCCCCccChhhCCCc
Confidence 45789999999999999999954 55555555 999999999976211 11 111 11
Q ss_pred CCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHH
Q 010538 264 YPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRH 341 (508)
Q Consensus 264 ~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~ 341 (508)
....+++.|++|.+| ++| +||+++++++++++..... ....+++.+. ..++..
T Consensus 222 ~~~~i~~~S~SK~~g-~~GlRiG~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~-q~~~~~ 276 (389)
T PRK05957 222 GNHTISLYSLSKAYG-FASWRIGYMVIPIHLLEAIKKIQD-----------------------TILICPPVVS-QYAALG 276 (389)
T ss_pred cCcEEEEecchhhcc-CccceeEEEecCHHHHHHHHHHHh-----------------------hcccCCCcHH-HHHHHH
Confidence 123488899999998 668 9999999988877664311 0111222222 222222
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceE-EEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHH
Q 010538 342 GFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVC-TIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKL 420 (508)
Q Consensus 342 al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 420 (508)
+++.- ...+++..+++.+.++++.+.|++++ ++ .+..+.+ +.++|++++.. ++..++.+.
T Consensus 277 ~l~~~-~~~~~~~~~~~~~~r~~l~~~L~~~~------~~~~~~~~~g--------g~~~~~~~~~~----~~~~~~~~~ 337 (389)
T PRK05957 277 ALQVG-KSYCQQHLPEIAQVRQILLKSLGQLQ------DRCTLHPANG--------AFYCFLKVNTD----LNDFELVKQ 337 (389)
T ss_pred HHhCC-hHHHHHHHHHHHHHHHHHHHHHHhcC------CCccccCCCe--------eEEEEEeCCCC----CChHHHHHH
Confidence 33210 01146666778888999999998763 33 3333322 67888887542 233456667
Q ss_pred H-hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 421 A-SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 421 L-~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
| +++||.+.+|..|... .++++|||++.. +.++++..++.|.+++
T Consensus 338 l~~~~gv~v~pg~~f~~~---------------------------------~~~~iRis~~~~-~~~~l~~~~~~l~~~~ 383 (389)
T PRK05957 338 LIREYRVAVIPGTTFGMK---------------------------------NGCYLRIAYGAL-QKATAKEGIERLVQGL 383 (389)
T ss_pred HHHHCCEEEccchhhCCC---------------------------------CCCEEEEEEecC-CHHHHHHHHHHHHHHH
Confidence 6 5689999999765321 146899999864 5777788777777665
Q ss_pred hh
Q 010538 500 NF 501 (508)
Q Consensus 500 ~~ 501 (508)
+.
T Consensus 384 ~~ 385 (389)
T PRK05957 384 KT 385 (389)
T ss_pred Hh
Confidence 43
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-25 Score=226.14 Aligned_cols=324 Identities=14% Similarity=0.102 Sum_probs=229.3
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHH
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALK 117 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~ 117 (508)
++.++|+.+.... +++.+++++.+.+... ....|+. . ...++|+.+|++++.++++ +|++|+|+++++.
T Consensus 26 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Y~~-~----~~~~lr~~ia~~~~~~~~~-~I~~t~G~~~~i~ 95 (356)
T PRK04870 26 TGMVKLDAMENPYRLPAELRAELGERLAEV----ALNRYPD-P----RAAALKAALRAAMGVPAGA-DVLLGNGSDELIQ 95 (356)
T ss_pred CCceeCcCCCCCCCCCHHHHHHHHHHhhcc----ccccCCC-C----CHHHHHHHHHHHhCcCCCC-cEEEcCCHHHHHH
Confidence 4799999887654 5666777665433211 1112221 1 1467899999999987532 7999999999999
Q ss_pred HHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCC
Q 010538 118 LVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP 197 (508)
Q Consensus 118 ~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~ 197 (508)
+++.++ ..+|++|+++.. ++..+...++..|++++.+|++++..+ |+++++ +++.
T Consensus 96 ~~~~~~-~~~gd~vlv~~P---~y~~~~~~~~~~g~~~~~i~~~~~~~~---------------d~~~l~--~~~~---- 150 (356)
T PRK04870 96 LLALAC-AKPGATVLAPEP---GFVMYRMSAKLAGLEFVGVPLTADFTL---------------DLPAML--AAIA---- 150 (356)
T ss_pred HHHHHh-cCCCCEEEECCC---CHHHHHHHHHHcCCEEEEecCCCCCCC---------------CHHHHH--HHhh----
Confidence 999988 578999998874 444555566678999999998755445 678888 5552
Q ss_pred CCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC-CCCC--CCCCCCCCcEEEEecc
Q 010538 198 AGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC-VTQP--PDLSKYPVDFVVMSFY 274 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~-g~~~--~d~~~~~~D~~~~S~~ 274 (508)
.+++++|++++++||||.++|.+++.++++. | ++++|+|+++.. .... ..+...+..+++.|++
T Consensus 151 -~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~---------~---~~~ii~De~y~~~~~~~~~~~~~~~~~vi~~~S~S 217 (356)
T PRK04870 151 -EHRPALVFLAYPNNPTGNLFDDADVERIIEA---------A---PGLVVVDEAYQPFAGDSWLPRLARFPNLLVMRTVS 217 (356)
T ss_pred -cCCCCEEEEcCCCCCCCCCCCHHHHHHHHHH---------C---CCEEEEECCchhhcCcchHHHHhhCCCEEEEecch
Confidence 2478999999999999999999999999994 3 778999998753 1111 1122223458899999
Q ss_pred ccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChH
Q 010538 275 KIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVP 352 (508)
Q Consensus 275 K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~ 352 (508)
| ++ .+| +|+++++++.++.+...... .+.+.....+...+++... .++
T Consensus 218 K-~~-~~GlRiG~~i~~~~~i~~~~~~~~~--------------------------~~~~~~~q~~a~~~l~~~~--~~~ 267 (356)
T PRK04870 218 K-LG-LAGLRLGYLAGHPAWIAELDKVRPP--------------------------YNVNVLTQATALFALEHVD--VLD 267 (356)
T ss_pred h-hh-hHHHhhhhhhCCHHHHHHHHHccCC--------------------------CcCCHHHHHHHHHHHhCHH--HHH
Confidence 9 77 557 89999999887766543211 1123333333444444322 257
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCC
Q 010538 353 AICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGC 432 (508)
Q Consensus 353 ~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~ 432 (508)
+..+++++.++++.+.|+++ +++.+. ++. ++++++++++ ..++.+.|.++||.|+++.
T Consensus 268 ~~~~~~~~~~~~l~~~L~~~------~~~~~~-~~~--------~~~~~~~~~~-------~~~~~~~l~~~gI~v~~~~ 325 (356)
T PRK04870 268 AQAAQLRAERTRLAAALAAL------PGVTVF-PSA--------ANFILVRVPD-------AAAVFDGLKTRGVLVKNLS 325 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhC------CCcEEC-CCC--------CeEEEEECCC-------HHHHHHHHHHCCEEEEECC
Confidence 77888899999999999887 366654 332 6788888762 2347889999999999876
Q ss_pred CCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 433 FCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 433 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
.+.. ...+++|||++ +.+++++++++|.++
T Consensus 326 ~f~~---------------------------------~~~~~iRis~~---~~~~~~~l~~al~~~ 355 (356)
T PRK04870 326 GMHP---------------------------------LLANCLRVTVG---TPEENAQFLAALKAA 355 (356)
T ss_pred CCCC---------------------------------CCCCeEEEeCC---CHHHHHHHHHHHHHh
Confidence 4421 12578999999 899999999998865
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-25 Score=248.70 Aligned_cols=343 Identities=15% Similarity=0.081 Sum_probs=251.1
Q ss_pred eeeeCCCCCCCCHHHH-HHHHHHhhccccC--CCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHH
Q 010538 42 VYLDHAGATLYSELQM-EAIFRDFTTNVYG--NPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKL 118 (508)
Q Consensus 42 iyld~~~~~~~~~~~~-~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~ 118 (508)
.|++.+......|.++ +.+.+. ..++. .|... ..+....+.+...+..+++++|+++. ++.++.++|.+.+.
T Consensus 79 ~~ig~G~y~~~~P~vi~~~i~~~--~~~~t~ytPyQ~-EisQG~Leal~~~Qt~la~LtG~~~a--naSl~d~aTAa~ea 153 (954)
T PRK05367 79 SYIGQGYYGTHTPPVILRNILEN--PAWYTAYTPYQP-EISQGRLEALLNFQTMVADLTGLEIA--NASLLDEATAAAEA 153 (954)
T ss_pred cccCCCCCCCcCcHHHHHHHHhC--cchhhccCCCCh-HHHHHHHHHHHHHHHHHHHHHCCChh--hccccccHHHHHHH
Confidence 4567676665666666 444331 01111 12211 12344566777899999999999998 89999999999999
Q ss_pred HHhhcCCCCC--CeEEEecccccchHHHHH-HHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCC
Q 010538 119 VGEAFPWSHQ--SSYMYTMENHNSVLGIRE-YALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPER 195 (508)
Q Consensus 119 ~~~~l~~~~g--~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~ 195 (508)
++.++.++++ ++|++++.+||+....++ +++..|++|+.+|.+.+ + .
T Consensus 154 ~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~d--~--------------------~-------- 203 (954)
T PRK05367 154 MALAKRVSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDAAKA--L--------------------D-------- 203 (954)
T ss_pred HHHhhhhccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEecCccC--C--------------------C--------
Confidence 9988876664 899999999999876544 56778999999987431 1 1
Q ss_pred CCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccc
Q 010538 196 DPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYK 275 (508)
Q Consensus 196 ~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K 275 (508)
++++..+ +.+..|.+|.+.|+++|.+++|+ +|++++||+.+.......+..++|+||+++|+||
T Consensus 204 ---~~~~~~v-lvq~p~~~G~i~d~~~i~~~ah~------------~Gal~~vda~~~Al~~l~~pge~GaDi~vgs~qk 267 (954)
T PRK05367 204 ---HDDVFGV-LLQYPGTSGEVRDYTALIAAAHA------------RGALVAVAADLLALTLLTPPGEMGADIAVGSAQR 267 (954)
T ss_pred ---cccEEEE-EEecCCCCeeeccHHHHHHHHHH------------cCCEEEEEehhhhccCCCChhhcCCCEEEeeCcc
Confidence 1234444 44557899999999999999998 8999999998865555567899999999999999
Q ss_pred c-----ccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHH-----HHH
Q 010538 276 I-----FGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHG-----FNL 345 (508)
Q Consensus 276 ~-----~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~a-----l~~ 345 (508)
| |||| |.|++++++++...+.+.+.|+...........+......+..+++.+|.|+....++.+. +.+
T Consensus 268 fg~P~g~GGP-~aGflavr~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~ 346 (954)
T PRK05367 268 FGVPMGFGGP-HAAYFAVRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVY 346 (954)
T ss_pred cCCCCCCCCC-CEEEEEECHHHHhhCCCCeeeeecccCCCcccccccccccccccccccccccchHHHHHHHHHHHHHHH
Confidence 9 7777 6999999999988888787776321111111111111223456889999998754333333 356
Q ss_pred HHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCC
Q 010538 346 INSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSG 425 (508)
Q Consensus 346 ~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~g 425 (508)
+...|++++.+++..++.++++.|++. |+++..+.. ...+.++++. +..++.+.|.++|
T Consensus 347 ~g~~Gl~~Ia~~~~~la~~l~~~L~~~-------G~~~~~~~~--------f~~~~~~~~~------~~~~i~~~l~~~g 405 (954)
T PRK05367 347 HGPEGLKAIARRVHRLAAILAAGLRAL-------GLEVVHDSF--------FDTLTVEVGG------DAAAVLARALAAG 405 (954)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHhc-------CcccCCCCC--------CCeEEEeCCC------CHHHHHHHHHHCC
Confidence 778899999999999999999999774 677765532 4677777531 2346899999999
Q ss_pred CeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhh
Q 010538 426 IQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 426 I~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~ 496 (508)
|.++.- .++.+|+|++.++|.+||+++++++.
T Consensus 406 i~~~~~---------------------------------------~~~~l~is~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 406 INLRRV---------------------------------------DDDHVGISLDETTTREDLAALLAVFG 437 (954)
T ss_pred ceeccc---------------------------------------cCCEEEEEecccCCHHHHHHHHHHHc
Confidence 997431 14679999999999999999999986
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.1e-25 Score=225.60 Aligned_cols=335 Identities=16% Similarity=0.158 Sum_probs=230.0
Q ss_pred chHHHHHHhhccCCCCCeeeeCCCC-CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCC
Q 010538 25 SIDQIRATEFKRLENGTVYLDHAGA-TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKD 103 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~~~iyld~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~ 103 (508)
.+..... +.+ . .+.+.|..+.. ..+++.+.+++.+.. .... .|.... ...+|+.+|+++|++++
T Consensus 21 ~~~~~~~-~~~-~-~~~i~l~~~~~~~~~~~~~~~a~~~~~-~~~~-----~y~~~~-----~~~lr~~ia~~~~~~~~- 85 (367)
T PRK02731 21 PIEELVR-EYG-I-ADIIKLASNENPLGPSPKAIEAIRAAA-DELH-----RYPDGS-----GFELKAALAEKFGVDPE- 85 (367)
T ss_pred CHHHHHH-hcC-C-CceEEecCCCCCCCCCHHHHHHHHHHH-Hhhc-----CCCCCc-----HHHHHHHHHHHhCcCHH-
Confidence 4444444 443 2 56777776632 224666666654432 2211 121111 25789999999999888
Q ss_pred ceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccch
Q 010538 104 YKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLP 183 (508)
Q Consensus 104 ~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~ 183 (508)
+|++|+|+++++++++.++ .++|+.|+++...|+.+ ...+...|++++.+|.++ ..+ |+
T Consensus 86 -~i~~t~G~~~~l~~~~~~l-~~~gd~vl~~~p~y~~~---~~~~~~~g~~~~~~~~~~-~~~---------------~~ 144 (367)
T PRK02731 86 -RIILGNGSDEILELLARAY-LGPGDEVIYSEHGFAVY---PIAAQAVGAKPVEVPAKD-YGH---------------DL 144 (367)
T ss_pred -HEEEcCCHHHHHHHHHHHh-cCCCCEEEEecCCHHHH---HHHHHHcCCeEEEecccC-CCC---------------CH
Confidence 8999999999999999988 67899999887666433 333456799999998843 333 57
Q ss_pred hhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC----C-
Q 010538 184 IQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ----P- 258 (508)
Q Consensus 184 ~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~----~- 258 (508)
++++ +.+ ++++++|++++++||||.++|.+++.++++. ++ +|+++++|+++..... .
T Consensus 145 ~~l~--~~~------~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~---------~~-~~~~li~De~y~~~~~~~~~~~ 206 (367)
T PRK02731 145 DAML--AAV------TPRTRLVFIANPNNPTGTYLPAEEVERFLAG---------VP-PDVLVVLDEAYAEYVRRKDYED 206 (367)
T ss_pred HHHH--HHh------CCCCcEEEEeCCCCCCCcCCCHHHHHHHHHh---------CC-CCcEEEEECcHHHhccCcCccc
Confidence 7888 554 3578999999999999999999999999985 33 4999999999764221 1
Q ss_pred -CCCC-CCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChh
Q 010538 259 -PDLS-KYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFL 334 (508)
Q Consensus 259 -~d~~-~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 334 (508)
++.. ..+..+++.|++|.|| ++| +||++++++.++.+...... + ..+..
T Consensus 207 ~~~~~~~~~~~i~~~S~SK~~g-~~G~RiG~l~~~~~~~~~l~~~~~~-----------------------~---~~~~~ 259 (367)
T PRK02731 207 GLELVAKFPNVVVTRTFSKAYG-LAGLRVGYGIAPPEIIDALNRVRQP-----------------------F---NVNSL 259 (367)
T ss_pred HHHHHhhcCCEEEEeeehHhhc-CcccceeeeeCCHHHHHHHHHccCC-----------------------C---CCCHH
Confidence 1111 1123477889999988 546 69999999887766543100 1 11223
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCH
Q 010538 335 SIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGY 414 (508)
Q Consensus 335 ~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 414 (508)
...++..+++. ...++++.++++++++++.+.|++. ++.+. ++. ++++++++++. .+.
T Consensus 260 ~~~~a~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~-~~~--------g~~~~i~~~~~----~~~ 317 (367)
T PRK02731 260 ALAAAVAALDD--DAFVEKSRALNAEGMAWLTEFLAEL-------GLEYI-PSV--------GNFILVDFDDG----KDA 317 (367)
T ss_pred HHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHC-------CCccC-CCC--------ceEEEEECCCC----CCH
Confidence 33333333331 1235778888889999999999876 45554 322 78999988432 234
Q ss_pred HHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHh
Q 010538 415 REVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCS 494 (508)
Q Consensus 415 ~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~ 494 (508)
.++.+.|.++||.++++..+. .++++|+|++ +.+|+++++++
T Consensus 318 ~~~~~~L~~~gI~v~~~~~~~-----------------------------------~~~~iRis~~---~~~e~~~l~~a 359 (367)
T PRK02731 318 AEAYQALLKRGVIVRPVAGYG-----------------------------------LPNALRITIG---TEEENRRFLAA 359 (367)
T ss_pred HHHHHHHHHCCEEEEeCCCCC-----------------------------------CCCeEEEecC---CHHHHHHHHHH
Confidence 568889989999999875321 1478999997 89999999999
Q ss_pred hhhhhh
Q 010538 495 SFDFVN 500 (508)
Q Consensus 495 ~~~~~~ 500 (508)
|+++++
T Consensus 360 L~~~~~ 365 (367)
T PRK02731 360 LKEFLA 365 (367)
T ss_pred HHHHHh
Confidence 998764
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=227.14 Aligned_cols=329 Identities=13% Similarity=0.053 Sum_probs=223.9
Q ss_pred CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeE
Q 010538 52 YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSY 131 (508)
Q Consensus 52 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~v 131 (508)
.++.+.+++.+.+....+..+..... .....+.+++++.+++++|.+ + .|++|+| ++++..++.++ ..+|++|
T Consensus 57 ~~~~i~~a~~~~~~~~~~~~~~~~~~--~G~~~l~~~l~~~la~~~g~~-~--~i~~tsG-~~a~~~~~~~l-~~~gd~v 129 (397)
T PRK06939 57 NHPELIAAAKAALDSHGFGMASVRFI--CGTQDLHKELEEKLAKFLGTE-D--AILYSSC-FDANGGLFETL-LGKEDAI 129 (397)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccccc--cCCcHHHHHHHHHHHHHhCCC-c--EEEEcCh-HHHHHHHHHHh-CCCCCEE
Confidence 46677776655442211111111111 123567788999999999976 4 6888888 67888888887 6889999
Q ss_pred EEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCC
Q 010538 132 MYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSEC 211 (508)
Q Consensus 132 l~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~ 211 (508)
++++..|+++....+. .|.++..++.. |++.++ +.+++......++++|+..++.
T Consensus 130 i~~~~~~~~~~~~~~~---~~~~~~~~~~~--------------------d~~~l~--~~i~~~~~~~~~~~~v~~~~v~ 184 (397)
T PRK06939 130 ISDALNHASIIDGVRL---CKAKRYRYANN--------------------DMADLE--AQLKEAKEAGARHKLIATDGVF 184 (397)
T ss_pred EEEhhhhHHHHHHHHh---cCCceEEeCCC--------------------CHHHHH--HHHHhhhccCCCCeEEEEecCc
Confidence 9999999988765544 47777776642 234444 3332110112378999999999
Q ss_pred CCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCC------CCC--CCCcEEEEeccccccCCCcc
Q 010538 212 NFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPD------LSK--YPVDFVVMSFYKIFGYPTGL 283 (508)
Q Consensus 212 n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d------~~~--~~~D~~~~S~~K~~g~P~G~ 283 (508)
|++|...++++|.++|++ +|+++|+|++|+.|....+ ... .++|++++|+||+++++. .
T Consensus 185 ~~~G~~~~~~~l~~la~~------------~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~r-~ 251 (397)
T PRK06939 185 SMDGDIAPLPEICDLADK------------YDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGAS-G 251 (397)
T ss_pred CCCCCcCCHHHHHHHHHH------------hCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCccC-c
Confidence 999999999999999998 9999999999976543221 111 157899999999996465 5
Q ss_pred eEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 010538 284 GALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGM 363 (508)
Q Consensus 284 G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~ 363 (508)
||+++++++++.+.+.... . ...++++....+++.++++++.. .+.+++++.++++
T Consensus 252 G~v~~~~~~~~~l~~~~~~---------------------~-~~~~~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~ 307 (397)
T PRK06939 252 GYTAGRKEVIDWLRQRSRP---------------------Y-LFSNSLAPAIVAASIKVLELLEE--SDELRDRLWENAR 307 (397)
T ss_pred eEEEeCHHHHHHHHHhCcc---------------------c-cccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHH
Confidence 9999998888776543100 0 11233444445666677887654 3678899999999
Q ss_pred HHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhc
Q 010538 364 YVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYL 443 (508)
Q Consensus 364 ~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~ 443 (508)
++.+.|+++ ++++..+. ++++.+.++.. .+..++.+.|.++||.+.++.++..+
T Consensus 308 ~l~~~L~~~-------~~~~~~~~---------~~~~~~~~~~~----~~~~~~~~~L~~~gI~v~~~~~~~~~------ 361 (397)
T PRK06939 308 YFREGMTAA-------GFTLGPGE---------HPIIPVMLGDA----KLAQEFADRLLEEGVYVIGFSFPVVP------ 361 (397)
T ss_pred HHHHHHHHc-------CCCcCCCC---------CCEEEEEECCH----HHHHHHHHHHHHCCceEeeeCCCCCC------
Confidence 999999876 45443321 45555554321 12345788888889998854321111
Q ss_pred CCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 444 GLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 444 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
...+++|+++++++|.+|++++++.|+++++-
T Consensus 362 --------------------------~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~ 393 (397)
T PRK06939 362 --------------------------KGQARIRTQMSAAHTKEQLDRAIDAFEKVGKE 393 (397)
T ss_pred --------------------------CCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 11468999999999999999999999988753
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.8e-25 Score=226.22 Aligned_cols=325 Identities=12% Similarity=0.056 Sum_probs=217.1
Q ss_pred CCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHH
Q 010538 39 NGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALK 117 (508)
Q Consensus 39 ~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~ 117 (508)
.+.+.|+.+... ++|+.+++++.+.. ... ..|+. .....+|+.+|++++++++ +|++|+|+++++.
T Consensus 20 ~~~i~l~~~~~~~~~p~~~~~a~~~~~-~~~-----~~y~~-----~~~~~lr~~ia~~~~~~~~--~i~it~Ga~~~l~ 86 (356)
T PRK08056 20 DQLLDFSANINPLGMPVSLKRAIIDNL-DCA-----ERYPD-----VEYRHLHQALARHHQVPAS--WILAGNGETESIF 86 (356)
T ss_pred hhEEEeccccCCCCCCHHHHHHHHHHH-Hhc-----ccCcC-----ccHHHHHHHHHHHhCcChh--hEEECCCHHHHHH
Confidence 567889877544 45666777665433 211 11221 1257899999999999998 8999999999999
Q ss_pred HHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCC
Q 010538 118 LVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP 197 (508)
Q Consensus 118 ~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~ 197 (508)
+++.++ .+|+.|+ .. |++..+...++..|++++.+|.+....++ +| +++. +.+
T Consensus 87 ~~~~~l--~~g~viv-~~---P~y~~~~~~~~~~g~~~~~v~~~~~~~~~-------------~~-~~~~--~~~----- 139 (356)
T PRK08056 87 AVVSGL--KPRRAMI-VT---PGFAEYRRALQQVGCEIRRYSLREADGWQ-------------LT-DAIL--EAL----- 139 (356)
T ss_pred HHHHHh--CCCCEEE-eC---CCcHHHHHHHHHcCCeEEEEecccccCCC-------------cc-HHHH--Hhc-----
Confidence 999887 4566544 43 45555556667789999999986432221 12 2344 222
Q ss_pred CCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCCCC-CCCCCCcEEEEe
Q 010538 198 AGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQPPD-LSKYPVDFVVMS 272 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d-~~~~~~D~~~~S 272 (508)
.+++++|++++++||||.+++.+++.++++ +|++++++||+|+++.. +...++ +...+.++++.|
T Consensus 140 -~~~~k~v~l~~p~NPTG~~~~~~~~~~i~~---------~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S 209 (356)
T PRK08056 140 -TPDLDCLFLCTPNNPTGLLPERQLLQAIAE---------RCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLRS 209 (356)
T ss_pred -cCCCCEEEEeCCcCCCCCCCCHHHHHHHHH---------HHHhcCCEEEEecchhccCCcchHHHHHhccCCCEEEEEe
Confidence 367899999999999999999665555544 34449999999999642 111111 233456799999
Q ss_pred ccccccCCCc--ceEEEEe-chhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhc
Q 010538 273 FYKIFGYPTG--LGALIMR-NDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSL 349 (508)
Q Consensus 273 ~~K~~g~P~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~ 349 (508)
+||+|| .+| +||++++ ++.++.+.... ...+.+.....+...+++- ..
T Consensus 210 ~SK~~~-~~G~RiG~~v~~~~~~~~~l~~~~--------------------------~~~~~~~~~~~~a~~~l~~--~~ 260 (356)
T PRK08056 210 LTKFYA-IPGLRLGYLVNSDDAAVARMRRQQ--------------------------MPWSINAFAALAGEVILQD--RA 260 (356)
T ss_pred chhhcc-CcchhheeeecCCHHHHHHHHHhC--------------------------CCCchhHHHHHHHHHHhCC--HH
Confidence 999999 667 8999985 45555444321 0112222223333333321 11
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeec
Q 010538 350 TVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLR 429 (508)
Q Consensus 350 g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~ 429 (508)
....+.+++++.++++.+.|++++ ++.+..+ . +++++++++.. . .++.+.|.++||.++
T Consensus 261 ~~~~~~~~~~~~r~~l~~~L~~~~------~~~~~~~-~--------~~~~~~~~~~~-~-----~~~~~~l~~~gI~v~ 319 (356)
T PRK08056 261 YQQATWQWLAEEGARFYQALCALP------LLTVWPG-R--------ANYLFLRCERP-D-----IDLQRALLTQRILIR 319 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC------CcEEcCC-C--------CcEEEEEcCCC-h-----HHHHHHHHHCCeEEE
Confidence 245667788889999999998873 5665533 2 68888887632 1 247788888999999
Q ss_pred cCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 430 TGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 430 ~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
+|..+... ..++||||++ +.++.++++++|++++
T Consensus 320 ~~~~f~~~---------------------------------~~~~iRis~~---~~~~~~~l~~~l~~~~ 353 (356)
T PRK08056 320 SCANYPGL---------------------------------DSRYYRVAIR---SAAENERLLAALRNVL 353 (356)
T ss_pred ECCCCCCC---------------------------------CCCEEEEEEc---CHHHHHHHHHHHHHHH
Confidence 98755221 2578999998 8999999999998764
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-25 Score=227.39 Aligned_cols=327 Identities=13% Similarity=0.128 Sum_probs=229.7
Q ss_pred chHHHHHHhhccCCCCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCC
Q 010538 25 SIDQIRATEFKRLENGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKD 103 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~ 103 (508)
....++. .+.. ++.+.|+.+-... +++.+++++.+... .. ..|+. ....++|+.+|++++++++
T Consensus 18 ~~~~~~~-~~~~--~~~i~l~~nen~~~~~~~v~~a~~~~~~-~~-----~~Yp~-----~g~~~Lr~aia~~~~~~~~- 82 (366)
T PRK01533 18 SPEQMKE-VYGD--HSFVKLASNENPFGCSPRVLDELQKSWL-DH-----ALYPD-----GGATTLRQTIANKLHVKME- 82 (366)
T ss_pred ChHHHHH-hcCC--CceEEeCCCCCCCCCCHHHHHHHHHHHH-hc-----CcCCC-----CCHHHHHHHHHHHhCCCcc-
Confidence 3444554 4532 5789999877664 46667776654322 11 11211 1146689999999999998
Q ss_pred ceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccch
Q 010538 104 YKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLP 183 (508)
Q Consensus 104 ~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~ 183 (508)
+|++|+|+++++.+++.++ .++|+.|+++...|+.+ ...++..|++++.||.+.. .+ |+
T Consensus 83 -~I~vt~Gs~e~i~~~~~~l-~~~gd~vlv~~P~y~~~---~~~~~~~g~~v~~v~~~~~-~~---------------d~ 141 (366)
T PRK01533 83 -QVLCGSGLDEVIQIISRAV-LKAGDNIVTAGATFPQY---RHHAIIEGCEVKEVALNNG-VY---------------DL 141 (366)
T ss_pred -eEEECCCHHHHHHHHHHHh-cCCCCEEEEcCCcHHHH---HHHHHHcCCEEEEeecCCC-Cc---------------CH
Confidence 9999999999999999998 67899999887555444 4455667999999998632 34 67
Q ss_pred hhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC------C
Q 010538 184 IQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT------Q 257 (508)
Q Consensus 184 ~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~------~ 257 (508)
++++ +++ .++++++++++++||||.+++.+++.++++ +|++++ ++|+|+++..-. .
T Consensus 142 ~~l~--~~~------~~~~~~v~i~~P~NPTG~~~~~~~l~~l~~---------~~~~~~-~~iiDe~y~~~~~~~~~~~ 203 (366)
T PRK01533 142 DEIS--SVV------DNDTKIVWICNPNNPTGTYVNDRKLTQFIE---------GISENT-LIVIDEAYYEYVTAKDFPE 203 (366)
T ss_pred HHHH--HHh------CcCCcEEEEeCCCCCCCCCcCHHHHHHHHH---------hCCCCC-EEEEEccHHHhhccccCcc
Confidence 8888 544 456799999999999999999999999988 465556 577798875211 0
Q ss_pred CCC-CCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChh
Q 010538 258 PPD-LSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFL 334 (508)
Q Consensus 258 ~~d-~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 334 (508)
.+. +...+..+++.|++|.|| .+| +||+++++++++.+.... .....+..
T Consensus 204 ~~~~~~~~~~vi~~~SfSK~~~-l~GlRiG~~i~~~~~~~~l~~~~--------------------------~~~~~~~~ 256 (366)
T PRK01533 204 TLPLLEKHKNILVLRTFSKAYG-LASFRVGYAVGHEELIEKLNVVR--------------------------LPFNVSSL 256 (366)
T ss_pred hhHHhccCCCEEEEeCchHHhc-ChHHHHhHHhCCHHHHHHHHHhc--------------------------CCCCcCHH
Confidence 111 112234588999999999 557 899999988877665431 11234444
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCH
Q 010538 335 SIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGY 414 (508)
Q Consensus 335 ~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 414 (508)
...++.++++- ....+.+.+...+.++++.+.++.+ ++++..+. ++++++.+++ .
T Consensus 257 ~q~aa~~~l~~--~~~~~~~~~~~~~~r~~~~~~l~~~-------g~~~~~~~---------~nf~~~~~~~--~----- 311 (366)
T PRK01533 257 AQKAATIAFGD--DEFIEEIVRVNTEGLRQYESFCKEN-------EIPFYQSQ---------TNFIFLPVEN--G----- 311 (366)
T ss_pred HHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHhC-------CCccCCCc---------CcEEEEeCCC--H-----
Confidence 45555555532 1124556667777788888878775 56655442 7899998752 2
Q ss_pred HHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHh
Q 010538 415 REVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCS 494 (508)
Q Consensus 415 ~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~ 494 (508)
..+.+.|.++||.|+. | ++++|||++ +.+|.++|+++
T Consensus 312 ~~~~~~l~~~GI~Vr~---~-------------------------------------~~~iRis~~---~~~~~~~l~~a 348 (366)
T PRK01533 312 GEIYEACAHAGFIIRP---F-------------------------------------PNGVRITVG---TREQNEGVISV 348 (366)
T ss_pred HHHHHHHHHCCcEEcc---C-------------------------------------CCceEEeCC---CHHHHHHHHHH
Confidence 2478889999999986 2 357999999 99999999999
Q ss_pred hhhhhh
Q 010538 495 SFDFVN 500 (508)
Q Consensus 495 ~~~~~~ 500 (508)
|+++++
T Consensus 349 l~~~~~ 354 (366)
T PRK01533 349 LQQHFE 354 (366)
T ss_pred HHHHHH
Confidence 998764
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-24 Score=224.78 Aligned_cols=336 Identities=13% Similarity=0.044 Sum_probs=218.8
Q ss_pred CCCeeeeCCCCCCC-CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc----CC--CCCCceEEEcCC
Q 010538 39 NGTVYLDHAGATLY-SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF----NA--SMKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~--~~~~~~i~~t~g 111 (508)
++.+.|+.+..... ++.+.+++.+.. ... ....|..... ...+|+.+++++ |. ++++ +|++|+|
T Consensus 29 ~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~Y~~~~G----~~~lr~~ia~~~~~~~~~~~~~~~-~vi~t~G 99 (383)
T TIGR03540 29 VDVISLGIGDPDLPTPKHIVEALCKAA-ENP---ENHRYPSYEG----MLAYRQAVADWYKRRFGVELDPET-EVLSLIG 99 (383)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHH-hCC---CCCCCCCCCC----CHHHHHHHHHHHHHhhCCCCCCCC-eEEECCC
Confidence 56788887765543 444555544322 210 1112221111 234555555554 44 3431 5899999
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCC
Q 010538 112 ATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGAS 191 (508)
Q Consensus 112 ~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~ 191 (508)
+++++.+++.++ .++|+.|+++...|+.+... ++..|.+++.+|.+.+..+ ..|+++++ +.
T Consensus 100 ~~~~l~~~~~~~-~~~gd~vlv~~P~y~~~~~~---~~~~G~~v~~v~~~~~~g~-------------~~d~~~l~--~~ 160 (383)
T TIGR03540 100 SKEGIAHIPLAF-VNPGDIVLVPDPGYPVYRIG---TLFAGGEPYEMPLKEENGF-------------LPDFDAIP--ED 160 (383)
T ss_pred cHHHHHHHHHHh-CCCCCEEEEeCCCCcchHHH---HHhcCCEEEEEecCcccCC-------------ccCHHHHH--hh
Confidence 999999999998 68899999999777766544 4456999999998643222 11577887 44
Q ss_pred CCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCCCCCCCC---
Q 010538 192 FPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQPPDLSKY--- 264 (508)
Q Consensus 192 l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d~~~~--- 264 (508)
+ .+++++|++++++||||.++|.+++.++++ +|+++|+++|+|+++.. +..++++...
T Consensus 161 ~------~~~~~~v~i~~P~NPtG~~~~~~~~~~i~~---------~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~ 225 (383)
T TIGR03540 161 I------AKKAKLMFINYPNNPTGAVAPLKFFKELVE---------FAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGA 225 (383)
T ss_pred c------cccceEEEEeCCCCCcCccCCHHHHHHHHH---------HHHHcCEEEEEecchhhhccCCCCCcCcccCCCc
Confidence 4 357899999999999999999766666655 45559999999999862 2233443222
Q ss_pred -CCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHH
Q 010538 265 -PVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRH 341 (508)
Q Consensus 265 -~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~ 341 (508)
+..+++.|++|.|| ++| +||++.++++++.+..... ....++ +.+...++..
T Consensus 226 ~~~~i~~~SfSK~~g-~~GlRiG~~i~~~~l~~~~~~~~~-----------------------~~~~~~-~~~~q~~~~~ 280 (383)
T TIGR03540 226 KDVGIEFHSLSKTYN-MTGWRIGMAVGNADLIAGLGKVKT-----------------------NVDSGV-FQAIQYAAIA 280 (383)
T ss_pred ccCEEEEEecccccC-CccceeeEEeCCHHHHHHHHHHHH-----------------------hcccCC-ChHHHHHHHH
Confidence 34588899999998 668 8999999888776553310 011122 2222333333
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHH
Q 010538 342 GFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLA 421 (508)
Q Consensus 342 al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L 421 (508)
+++-. ...++.+++++.+.++.+.+.|++. ++.+..+.+ +.++++.+++. ++..++...|
T Consensus 281 ~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~~-------~~~~~~~~~--------~~~~~~~l~~~----~~~~~~~~~l 340 (383)
T TIGR03540 281 ALNGP-QDVVKEIRKIYQRRRDLLLEALKKI-------GIDVEKPKA--------TFYVWVPVPEG----YTSAEFAARL 340 (383)
T ss_pred HHhCC-HHHHHHHHHHHHHHHHHHHHHHHhC-------CCEecCCCc--------ceEEEEECCCC----CCHHHHHHHH
Confidence 44321 1225667788888999999999886 577665543 56788888642 2334566654
Q ss_pred -hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhh
Q 010538 422 -SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFD 497 (508)
Q Consensus 422 -~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~ 497 (508)
+++||.+++|..|... ..+++|||++. +.+++...++.|++
T Consensus 341 l~~~gi~v~~g~~f~~~---------------------------------~~~~~Ris~~~--~~~~l~~~l~~l~~ 382 (383)
T TIGR03540 341 LEETGVVVTPGVGFGEY---------------------------------GEGYIRISLTV--PDERLEEAVARIKK 382 (383)
T ss_pred HHHCCEEEecchhhCcc---------------------------------CCCeEEEEecC--CHHHHHHHHHHHhh
Confidence 6789999998765321 25789999983 67787777777654
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-24 Score=229.95 Aligned_cols=309 Identities=15% Similarity=0.108 Sum_probs=216.6
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccC
Q 010538 82 TCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVE 161 (508)
Q Consensus 82 ~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~ 161 (508)
.....+++++.+|+++|.+ + .|++++|.. ++..++.++ .++|+.|++++..|+++.... +..|++++.++.+
T Consensus 144 ~~~~~~ele~~lA~~~g~~-~--ai~~~~G~~-an~~~i~al-~~~Gd~Vi~d~~~h~s~~~~~---~~~Ga~v~~~~~~ 215 (489)
T PLN02483 144 TTKLHRELEELVARFVGKP-A--AIVFGMGYA-TNSTIIPAL-IGKGGLIISDSLNHNSIVNGA---RGSGATIRVFQHN 215 (489)
T ss_pred CcHHHHHHHHHHHHHhCCC-c--EEEECCHHH-HHHHHHHHh-CCCCCEEEEcchhhHHHHHHH---HHcCCeEEEEeCC
Confidence 4667889999999999964 3 588877654 555667777 688999999999999977654 4469999999865
Q ss_pred CccCccccccccccccccccchhhhhcCCCCCCC--CCCCCCce-EEEEeCCCCCCccccCHHHHHHHHcCCccccccCC
Q 010538 162 EAVDNDGLSESLVTSTKISLLPIQRRKGASFPER--DPAGDAYN-LFAFPSECNFSGSRFNLDLINIMKKNPERILEISP 238 (508)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~--~~~~~~t~-lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~ 238 (508)
....+ -+.++ +++... ....|..+ +|++..+.|++|.+.++++|.++|++
T Consensus 216 d~~~l----------------e~~l~--~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~l~~I~~la~~--------- 268 (489)
T PLN02483 216 TPSHL----------------EEVLR--EQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKK--------- 268 (489)
T ss_pred CHHHH----------------HHHHH--hhhhccccccccCCceEEEEECCCCCCCCcccCHHHHHHHHHH---------
Confidence 32111 11122 222110 00112235 66777788999999999999999998
Q ss_pred CCCCCeEEEEeccccCCCCC---------CCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEec
Q 010538 239 FSKGRWMVLIDAAKGCVTQP---------PDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAAS 309 (508)
Q Consensus 239 ~~~~g~~vivD~a~~~g~~~---------~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~ 309 (508)
+|+++++|++|+.|... .++...++|++++|++|.|| +.| |++++++++++.++....+.
T Consensus 269 ---~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g-~~G-G~i~~~~~li~~l~~~~~~~------ 337 (489)
T PLN02483 269 ---YKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFG-SCG-GYIAGSKELIQYLKRTCPAH------ 337 (489)
T ss_pred ---cCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhcc-cCc-eEEEcCHHHHHHHHHhCccc------
Confidence 99999999999865432 23333468999999999999 777 99999999887776442110
Q ss_pred ccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEec
Q 010538 310 IADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSL----TVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYG 385 (508)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~----g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~ 385 (508)
...++.+.+.+.++.++++.+... ...+..++++++++++++.|+++ ++.+++
T Consensus 338 ----------------~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~-------G~~v~~ 394 (489)
T PLN02483 338 ----------------LYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKM-------GFEVLG 394 (489)
T ss_pred ----------------cccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHC-------CCcccC
Confidence 112334445555666778766522 13455788999999999999987 566665
Q ss_pred CCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCcc
Q 010538 386 TYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDND 465 (508)
Q Consensus 386 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 465 (508)
+.. ++++++.+.... +...+.+.|.++||.+.+..++..+.
T Consensus 395 ~~~--------sp~~~l~l~~~~----~~~~~~~~Ll~~GI~v~~~~fp~~p~--------------------------- 435 (489)
T PLN02483 395 DND--------SPVMPIMLYNPA----KIPAFSRECLKQNVAVVVVGFPATPL--------------------------- 435 (489)
T ss_pred CCC--------CCEEEEEECCHH----HHHHHHHHHHHCCcEEeeeCCCCCCC---------------------------
Confidence 543 567777664321 12347778888999998643333221
Q ss_pred ccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhh
Q 010538 466 IIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 466 ~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~ 503 (508)
..+.+|++++..+|.||+++++++|+++.+.++
T Consensus 436 -----~~~~vRi~isa~~t~edId~~l~~L~~~~~~~~ 468 (489)
T PLN02483 436 -----LLARARICISASHSREDLIKALEVISEVGDLVG 468 (489)
T ss_pred -----CCceEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 146899999999999999999999999876654
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-24 Score=223.49 Aligned_cols=336 Identities=14% Similarity=0.037 Sum_probs=218.0
Q ss_pred CCCeeeeCCCCCCC-CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc----CC--CCCCceEEEcCC
Q 010538 39 NGTVYLDHAGATLY-SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF----NA--SMKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~--~~~~~~i~~t~g 111 (508)
++.+.|+.+..... ++.+.+++ ....... ....|..... ...+|+++++++ |. ++++ +|++|+|
T Consensus 31 ~~~i~l~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~Y~~~~G----~~~lr~aia~~~~~~~g~~~~~~~-~ii~t~G 101 (385)
T PRK09276 31 VDVISLGIGDPDLPTPDHIIEAM-CKAVEDP---ENHQYPSYEG----MLEFRKAVADWYKRRFGVELDPET-EVISLIG 101 (385)
T ss_pred CCEEEecCCCCCCCCCHHHHHHH-HHHHhCC---CCCCCCCCCC----cHHHHHHHHHHHHHHhCCCCCCCC-cEEEccC
Confidence 56788887765543 44455544 3332211 0111221111 344556666655 54 4441 4889999
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCC
Q 010538 112 ATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGAS 191 (508)
Q Consensus 112 ~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~ 191 (508)
+++++.+++.++ .++|+.|+++...|+.+... ++..|.+++.+|.+.+..+ .+|++.++ +.
T Consensus 102 ~~~~i~~~~~~~-~~~gd~Vl~~~P~y~~~~~~---~~~~g~~~~~v~~~~~~g~-------------~~d~~~l~--~~ 162 (385)
T PRK09276 102 SKEGIAHIPLAF-VNPGDVVLVPDPGYPVYKIG---TIFAGGEPYFMPLKEENGF-------------LPDLDAIP--ED 162 (385)
T ss_pred cHHHHHHHHHHh-CCCCCEEEEcCCCCcChHHH---HHHcCCEEEEEecCCCCCC-------------cCCHHHHH--Hh
Confidence 999999999998 68899999998777665544 4456999999998643222 12577777 44
Q ss_pred CCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCCCCCCCC---
Q 010538 192 FPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQPPDLSKY--- 264 (508)
Q Consensus 192 l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d~~~~--- 264 (508)
+ .+++++|++++++||||.++|.+++.++++ +|+++|++||+|+++.. +..+.++...
T Consensus 163 ~------~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~---------~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~ 227 (385)
T PRK09276 163 V------AKKAKLMFINYPNNPTGAVADLEFFEEVVD---------FAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGA 227 (385)
T ss_pred c------cccceEEEEeCCCCCCCCCCCHHHHHHHHH---------HHHHCCcEEEEecchhheecCCCCCCChhccCCC
Confidence 3 457899999999999999999876666665 45559999999999863 2222332221
Q ss_pred -CCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHH
Q 010538 265 -PVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRH 341 (508)
Q Consensus 265 -~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~ 341 (508)
+..+++.|++|.|| ++| +||+++++++++.+..... ....+.+.+...++..
T Consensus 228 ~~~~i~~~S~SK~~g-~~GlRiG~~i~~~~l~~~~~~~~~------------------------~~~~~~~~~~q~~~~~ 282 (385)
T PRK09276 228 KDVGIEFHSLSKTYN-MTGWRIGFAVGNADLIAGLGKVKS------------------------NVDSGVFQAIQEAGIA 282 (385)
T ss_pred cCCEEEEecchhhcC-CcchhheeeeCCHHHHHHHHHHHh------------------------hccCCCCHHHHHHHHH
Confidence 34588999999998 668 8999999888776654310 0011122223333333
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHH
Q 010538 342 GFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLA 421 (508)
Q Consensus 342 al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L 421 (508)
+++.. ...++++++++.+.++++.+.|++. +++++.+.+ +.++++++++. ++..++.+.|
T Consensus 283 ~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-------~~~~~~~~~--------~~~~~v~~~~~----~~~~~l~~~l 342 (385)
T PRK09276 283 ALNGP-QEVVEELRKIYQERRDILVEGLRKL-------GLEVEPPKA--------TFYVWAPVPKG----YTSAEFATLL 342 (385)
T ss_pred HHcCc-HHHHHHHHHHHHHHHHHHHHHHHhC-------CCcccCCCc--------ceEEEEECCCC----CCHHHHHHHH
Confidence 44311 1235677888888899999999876 566655432 56688887642 2344566665
Q ss_pred -hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhh
Q 010538 422 -SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFD 497 (508)
Q Consensus 422 -~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~ 497 (508)
+++||.+++|..|... .++++|||++. +.+++...++.|.+
T Consensus 343 l~~~gi~v~~g~~f~~~---------------------------------~~~~~Ris~~~--~~~~l~~~l~~l~~ 384 (385)
T PRK09276 343 LDKAGVVVTPGNGFGEY---------------------------------GEGYFRIALTV--PDERIEEAVERIKK 384 (385)
T ss_pred HHhCCEEECCchhhCCC---------------------------------CCCeEEEEeCC--CHHHHHHHHHHHhh
Confidence 5689999998755321 15789999983 67777777776653
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-24 Score=223.38 Aligned_cols=336 Identities=15% Similarity=0.062 Sum_probs=227.0
Q ss_pred CCeeeeCCC-CCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHH
Q 010538 40 GTVYLDHAG-ATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALK 117 (508)
Q Consensus 40 ~~iyld~~~-~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~ 117 (508)
+++.|..+. .+. +++.+.+++.+.+.. ++.....+........+.+++++.+++++|.+ . .+++++| ++++.
T Consensus 34 ~~id~~~~~~~g~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g~~-~--~i~~~sG-~~a~~ 107 (385)
T TIGR01825 34 EVINLSSNNYLGFADHPRLKEAAAQAIQQ--YGVGAGAVRTIAGTLRLHEELEEKLAKFKKTE-A--ALVFQSG-FNTNQ 107 (385)
T ss_pred eEEEeeccCccCCCCCHHHHHHHHHHHHH--cCCCCCccCcccCCcHHHHHHHHHHHHHhCCC-c--EEEECcH-HHHHH
Confidence 344444332 244 577777776654432 11111122222224567888999999999974 4 5888877 55676
Q ss_pred HHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCC
Q 010538 118 LVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP 197 (508)
Q Consensus 118 ~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~ 197 (508)
.++.++ ..+|++|+++...|+++...+.. .|+++..++. + |+++++ +.+.+ .
T Consensus 108 ~a~~~~-~~~gd~vi~~~~~~~~~~~~~~~---~g~~~~~~~~-----~---------------d~~~l~--~~l~~--~ 159 (385)
T TIGR01825 108 GVLSAL-LRKGDIVLSDELNHASIIDGLRL---TKATKKIYKH-----A---------------DMDDLD--RVLRE--N 159 (385)
T ss_pred HHHHHh-CCCCCEEEEEccccHHHHHHHHh---cCCceEEeCC-----C---------------CHHHHH--HHHHh--h
Confidence 777777 67899999998888887655443 4777665541 2 344455 33321 1
Q ss_pred CCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCC---------CCCCCCCCcE
Q 010538 198 AGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQP---------PDLSKYPVDF 268 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~---------~d~~~~~~D~ 268 (508)
..+++++|++++++|+||.+.|+++|.++|++ +|+++|+|++|+.+..+ +++. .++|+
T Consensus 160 ~~~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~------------~~~~li~De~~~~~~~~~~~~~~~~~~~~~-~~~~i 226 (385)
T TIGR01825 160 PSYGKKLIVTDGVFSMDGDVAPLPEIVELAER------------YGAVTYVDDAHGSGVMGEAGRGTVHHFGLE-DKVDI 226 (385)
T ss_pred ccCCCeEEEEecCCcCCCCccCHHHHHHHHHH------------hCCEEEEECcccccCcCCCCCccHhhcCCC-cCCcE
Confidence 23578999999999999999999999999998 99999999999765432 2333 46899
Q ss_pred EEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCcccccc-CCCCChhHHHHHHHHHHHHH
Q 010538 269 VVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFE-DGTASFLSIASIRHGFNLIN 347 (508)
Q Consensus 269 ~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~gt~~~~~~~~l~~al~~~~ 347 (508)
++.|+||+++ +.| |+++.+++.++.+.... ..+. .++.+...++++.++++.+.
T Consensus 227 ~~~s~sK~~~-~~g-G~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~a~~~al~~~~ 281 (385)
T TIGR01825 227 QVGTLSKAIG-VVG-GYAAGHKELIEYLKNRA-----------------------RPFLFSTAQPPAVVAALAAAVDELQ 281 (385)
T ss_pred EEEeccHHhh-cCC-CEEecCHHHHHHHHHhC-----------------------ccccccCCCCHHHHHHHHHHHHHHh
Confidence 9999999998 556 88888888776654321 0011 12244556677777888765
Q ss_pred hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCe
Q 010538 348 SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQ 427 (508)
Q Consensus 348 ~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~ 427 (508)
+. .+..+++.++++++.+.|+++ ++++..+. ++++.+.++.. .+..++.+.|.++||.
T Consensus 282 ~~--~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~---------~~~~~~~~~~~----~~~~~~~~~L~~~gi~ 339 (385)
T TIGR01825 282 RS--PELMERLWDNTRFFKAGLGKL-------GYDTGGSE---------TPITPVVIGDE----KAAQEFSRRLFDEGIF 339 (385)
T ss_pred cC--HHHHHHHHHHHHHHHHHHHHc-------CCCCCCCC---------CCEEEEEECCH----HHHHHHHHHHHHCCcE
Confidence 43 457788889999999999876 56665432 45666665321 1223577788778999
Q ss_pred eccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 428 LRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 428 v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
++++..+..+. ..+.+|+++++++|.+|++++++.++++++.
T Consensus 340 v~~~~~~~~~~--------------------------------~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~~ 381 (385)
T TIGR01825 340 AQSIVFPTVPR--------------------------------GTARIRNIPTAEHTKDDLDQALDAYEKVGKE 381 (385)
T ss_pred EcccCCCCCCC--------------------------------CCceEEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 86543221111 2468999999999999999999999987753
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.9e-25 Score=224.78 Aligned_cols=285 Identities=14% Similarity=0.087 Sum_probs=202.0
Q ss_pred HHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCC-CeEEEecccccchHHHHHHHHhcCCeEEEEccCCccC
Q 010538 87 RAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQ-SSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVD 165 (508)
Q Consensus 87 ~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g-~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~ 165 (508)
.++++++++++|++++ +|++|+|+++++.+++.++ ..+| +.|+++...|+. ....++..|++++.+|.+.+..
T Consensus 60 ~~l~~~~a~~~g~~~~--~I~~~~Gs~e~i~~~~~~~-~~~g~~~vli~~P~y~~---y~~~~~~~G~~~~~v~~~~~~~ 133 (351)
T PRK01688 60 KAVIENYAAYAGVKPE--QVLVSRGADEGIELLIRAF-CEPGKDAILYCPPTYGM---YSVSAETIGVEIRTVPTLDNWQ 133 (351)
T ss_pred HHHHHHHHHHhCCCHH--HEEEcCCHHHHHHHHHHHh-cCCCCCEEEEcCCCHHH---HHHHHHHcCCEEEEeecCCCCC
Confidence 5788999999999998 9999999999999999998 5665 889988755554 4445566799999999875444
Q ss_pred ccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeE
Q 010538 166 NDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWM 245 (508)
Q Consensus 166 ~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~ 245 (508)
+ |+++++ +++ +++++|++++++||||.+++.+++.++++. |++ +++
T Consensus 134 ~---------------d~~~l~--~~~-------~~~~lv~l~nPnNPTG~~~~~~~l~~l~~~---------~~~-~~~ 179 (351)
T PRK01688 134 L---------------DLPAIA--DNL-------DGVKVVYVCSPNNPTGNLINPQDLRTLLEL---------TRG-KAI 179 (351)
T ss_pred C---------------CHHHHH--Hhc-------cCCcEEEEeCCCCCCCCCCCHHHHHHHHHh---------CCC-CcE
Confidence 4 678888 443 367999999999999999999999999883 444 688
Q ss_pred EEEeccccCCCCCCC---C-CCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhc
Q 010538 246 VLIDAAKGCVTQPPD---L-SKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRR 319 (508)
Q Consensus 246 vivD~a~~~g~~~~d---~-~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~ 319 (508)
||+|+++..-....+ + ...+--+++.|++|+|| ++| +|+++++++.++.+......+
T Consensus 180 vivDEay~~f~~~~s~~~~~~~~~n~iv~rSfSK~~g-laGlRiGy~i~~~~~i~~l~~~~~~~---------------- 242 (351)
T PRK01688 180 VVADEAYIEFCPQASLAGWLAEYPHLVILRTLSKAFA-LAGLRCGFTLANEEVINLLLKVIAPY---------------- 242 (351)
T ss_pred EEEECchhhcCCCCChHHHHhhCCCEEEEecchHhhc-CHHHHHhHHhCCHHHHHHHHhccCCC----------------
Confidence 999999853221111 1 12233478899999999 778 699999999887766442111
Q ss_pred cCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCce
Q 010538 320 QGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSM 399 (508)
Q Consensus 320 ~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (508)
..+.....+..++++.....-+++..+++.+.++++.+.|++++ +++.+.|+. +++
T Consensus 243 ----------~v~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~------~~~~~~ps~--------~nf 298 (351)
T PRK01688 243 ----------PLSTPVADIAAQALSPQGIAAMRERVAEINANRQWLIAALKEIP------CVEQVFDSE--------TNY 298 (351)
T ss_pred ----------CCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhCC------CCCeECCCC--------CcE
Confidence 12222222222233210001145556677778899999998873 554344443 788
Q ss_pred EEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEec
Q 010538 400 VSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSF 479 (508)
Q Consensus 400 v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~ 479 (508)
+++++++ . .++.+.|.++||.|+.+..+.. .++++|||+
T Consensus 299 i~~~~~~--~-----~~l~~~L~~~gi~vr~~~~~~~----------------------------------~~~~iRis~ 337 (351)
T PRK01688 299 ILARFTA--S-----SAVFKSLWDQGIILRDQNKQPG----------------------------------LSNCLRITI 337 (351)
T ss_pred EEEEcCC--H-----HHHHHHHHHCCeEEEECCCcCC----------------------------------CCCeEEEeC
Confidence 8888752 1 3478888899999987532211 157899999
Q ss_pred CCCCCHHHHHHHHHhhh
Q 010538 480 GYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 480 ~~~~t~eev~~l~~~~~ 496 (508)
+ +.+|+++++++|+
T Consensus 338 ~---~~~e~~~l~~al~ 351 (351)
T PRK01688 338 G---TREECQRVIDALR 351 (351)
T ss_pred C---CHHHHHHHHHhhC
Confidence 9 8999999998863
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-24 Score=220.27 Aligned_cols=322 Identities=15% Similarity=0.099 Sum_probs=222.7
Q ss_pred CCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHH
Q 010538 40 GTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKL 118 (508)
Q Consensus 40 ~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~ 118 (508)
..+-|+.+.... +|+.+.+++.+ .+... .. ..|.. .....+|+.+|++++++++ +|++|+|+++++.+
T Consensus 23 ~~~~l~~~~~~~~~p~~~~~a~~~-~~~~~--~~-~~y~~-----~~~~~lr~~ia~~~~~~~~--~i~it~G~~~~l~~ 91 (351)
T PRK14807 23 YKYKMDANETPFELPEEVIKNIQE-IVKSS--QV-NIYPD-----PTAEKLREELARYCSVVPT--NIFVGNGSDEIIHL 91 (351)
T ss_pred ceeEccCCCCCCCCCHHHHHHHHH-HhhcC--cc-cCCCC-----ccHHHHHHHHHHHhCCCcc--cEEEecCHHHHHHH
Confidence 456788777664 46667676543 33210 11 11211 1146789999999999988 89999999999999
Q ss_pred HHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCC
Q 010538 119 VGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPA 198 (508)
Q Consensus 119 ~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~ 198 (508)
++.++ .++|++|+++.. ++..+...++..|++++.++.+.+..+ |+++++ +++.
T Consensus 92 ~~~~l-~~~gd~Vlv~~p---~y~~~~~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~--~~~~----- 145 (351)
T PRK14807 92 IMLAF-INKGDVVIYPHP---SFAMYSVYSKIAGAVEIPVKLKEDYTY---------------DVGSFI--KVIE----- 145 (351)
T ss_pred HHHHh-cCCCCEEEEeCC---ChHHHHHHHHHcCCeEEEeecCCCCCC---------------CHHHHH--HHhh-----
Confidence 99998 688999998764 444444555668999999998754444 577887 5542
Q ss_pred CCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC--CCCCCC-CCCCCCcEEEEeccc
Q 010538 199 GDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC--VTQPPD-LSKYPVDFVVMSFYK 275 (508)
Q Consensus 199 ~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~--g~~~~d-~~~~~~D~~~~S~~K 275 (508)
..+++++++++++||||.++|.+++.+++++ ++.++|+|+++.. +....+ +...+..+++.|++|
T Consensus 146 ~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~------------~~~~~ivDe~y~~~~~~~~~~~~~~~~~vi~~~S~SK 213 (351)
T PRK14807 146 KYQPKLVFLCNPNNPTGSVIEREDIIKIIEK------------SRGIVVVDEAYFEFYGNTIVDVINEFENLIVLRTLSK 213 (351)
T ss_pred ccCCCEEEEeCCCCCCCCCCCHHHHHHHHHh------------CCCEEEEeCcchhhcccchHHHhhhCCCEEEEecchH
Confidence 2378999999999999999999999999986 6778999999853 211111 122234588999999
Q ss_pred cccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHH
Q 010538 276 IFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPA 353 (508)
Q Consensus 276 ~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~ 353 (508)
.+| .+| +||++.+++.++.+..... ....+.....++..+++ +..+++
T Consensus 214 ~~~-~~GlRiG~~v~~~~~~~~~~~~~~--------------------------~~~~~~~~q~~~~~~l~---~~~~~~ 263 (351)
T PRK14807 214 AFG-LAGLRVGYAVANENILKYLNLVKS--------------------------PYNINSLSQVIALKVLR---TGVLKE 263 (351)
T ss_pred hcc-cchhceeeeecCHHHHHHHHHccC--------------------------CCCcCHHHHHHHHHHHh---HHHHHH
Confidence 998 557 8999998888776553210 01122233333333333 323566
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCC
Q 010538 354 ICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCF 433 (508)
Q Consensus 354 i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~ 433 (508)
..+++.+.++++.+.|+++ +++.+. ++. ++++++++++ ..++.+.|.++||.++.+..
T Consensus 264 ~~~~~~~~r~~l~~~l~~~------~g~~~~-~~~--------~~~~~i~~~~-------~~~~~~~l~~~gV~v~~~~~ 321 (351)
T PRK14807 264 RVNYILNERERLIKELSKI------PGIKVY-PSK--------TNFILVKFKD-------ADYVYQGLLERGILVRDFSK 321 (351)
T ss_pred HHHHHHHHHHHHHHHHHhC------CCcEEC-cCC--------ccEEEEEcCC-------HHHHHHHHHHCCEEEEECCC
Confidence 6677788888899999776 367654 332 6778888753 23478888889999976321
Q ss_pred CCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 434 CNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 434 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
. . ...+++|||++ +.++.+++++.|++++
T Consensus 322 ~-~---------------------------------~~~~~iRis~~---~~~~~~~l~~~l~~~~ 350 (351)
T PRK14807 322 V-E---------------------------------GLEGALRITVS---SCEANDYLINGLKELL 350 (351)
T ss_pred C-C---------------------------------CCCCeEEEEcC---CHHHHHHHHHHHHHhh
Confidence 0 0 01578999998 7899999999988753
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=226.58 Aligned_cols=348 Identities=13% Similarity=0.035 Sum_probs=247.7
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhcccc--CCCCCccchhhhhhHHHHH-HHHHHHHHcCCCCCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVY--GNPHSQSDISLATCDIVRA-AREQVLDYFNASMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~r~~la~~~~~~~~~~~i~~t~g~t~a 115 (508)
.+.+-|- ++...+++.+++++-..+ .+.| +.|+..|+.|....+.++. +.+.+.++||++.. +|-..+| +.|
T Consensus 49 ~~~l~Li-asEN~~s~~v~~a~~s~l-~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~a~~a--nvqp~Sg-~~A 123 (493)
T PRK13580 49 RSSLKLI-ASENYSSLAVQLAMGNLL-TDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFGAEHA--YVQPHSG-ADA 123 (493)
T ss_pred hcCceEe-cccccCCHHHHHHhcccc-cccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhCCCcc--cccCCCc-HHH
Confidence 5566665 667777999988875544 4444 5677777777666666665 88889999999887 5655444 558
Q ss_pred HHHHHhhcCCCC-------------------------------CCeEEEecccccchHH---HHHHHHhcCCeEEEEccC
Q 010538 116 LKLVGEAFPWSH-------------------------------QSSYMYTMENHNSVLG---IREYALSQGAAAFAIDVE 161 (508)
Q Consensus 116 l~~~~~~l~~~~-------------------------------g~~vl~~~~~h~s~~~---~~~~~~~~G~~v~~v~~~ 161 (508)
+..++.++. ++ ||+|+..+..|...+. ..... ....+++..+++
T Consensus 124 n~~v~~all-~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~-~~~~~~~~y~vd 201 (493)
T PRK13580 124 NLVAFWAIL-AHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNIS-GKMFHQRSYGVD 201 (493)
T ss_pred HHHHHHHHh-cccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchh-hheeeeEecccC
Confidence 888888883 32 7888887665543321 11111 112445555565
Q ss_pred C-ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCC
Q 010538 162 E-AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFS 240 (508)
Q Consensus 162 ~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~ 240 (508)
. .+.+ |.++++ +.+ .+.++.|++++.+|. |...|+++|.++|++
T Consensus 202 ~~~g~i---------------D~d~l~--~~~------~~~~plvii~g~S~~-~~~~dl~~i~eia~~----------- 246 (493)
T PRK13580 202 PDTGLL---------------DYDEIA--ALA------REFKPLILVAGYSAY-PRRVNFAKLREIADE----------- 246 (493)
T ss_pred cccCcc---------------CHHHHH--HHH------hhcCCEEEEeCcccc-CCCcCHHHHHHHHHH-----------
Confidence 3 3445 688888 444 567788999999888 558899999999998
Q ss_pred CCCeEEEEeccccCCCCCCCCC------CCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchh
Q 010538 241 KGRWMVLIDAAKGCVTQPPDLS------KYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADID 314 (508)
Q Consensus 241 ~~g~~vivD~a~~~g~~~~d~~------~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~ 314 (508)
+|+++++|++|++|..+.+.. ..++||+++|+||++.||.| |++++++++++.+...
T Consensus 247 -~gA~L~VD~AH~~Gligg~~~~~~~~~~~~~D~vtgT~hKaL~GP~G-G~I~~~~~l~~~L~~a--------------- 309 (493)
T PRK13580 247 -VGAVLMVDMAHFAGLVAGKVFTGDEDPVPHADIVTTTTHKTLRGPRG-GLVLAKKEYADAVDKG--------------- 309 (493)
T ss_pred -cCCEEEEECchhhceeccccchhhcCCCCCCcEEEeCChhhccCCCe-EEEEecHHHHHHHhhC---------------
Confidence 999999999999998876552 12789999999998855987 9999999887766211
Q ss_pred hhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccC
Q 010538 315 FVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYH 394 (508)
Q Consensus 315 ~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~ 394 (508)
..+..|++..+.+++...++..+.+....++++++.+++++|++.|.+. |+.++...+.
T Consensus 310 ---------~P~i~gg~l~p~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~L~~~-------G~~vv~ggTd----- 368 (493)
T PRK13580 310 ---------CPLVLGGPLPHVMAAKAVALAEARTPEFQKYAQQVVDNARALAEGFLKR-------GARLVTGGTD----- 368 (493)
T ss_pred ---------CCcccCCCccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhc-------CCCccCCCCC-----
Confidence 1122345556678887778887765555778999999999999999987 7877643332
Q ss_pred CCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCce
Q 010538 395 DTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGA 474 (508)
Q Consensus 395 ~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (508)
++++.+.+.+.+ .....+.+.|.+.||.+..-..++.+.+ ......
T Consensus 369 --shIV~V~lg~~~---~~g~~a~~~L~e~GI~vn~i~~Ptvp~g-----------------------------~~~~sr 414 (493)
T PRK13580 369 --NHLVLIDVTSFG---LTGRQAESALLDAGIVTNRNSIPSDPNG-----------------------------AWYTSG 414 (493)
T ss_pred --CCEEEEEeCCHH---HHHHHHHHHHHHCCeEEccccCCCCCCC-----------------------------CCCCce
Confidence 799999986532 1223477899999999876544333221 012577
Q ss_pred EEEecCCCC----CHHHHHHHHHhhhhhhh
Q 010538 475 IRVSFGYMS----TFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 475 iRis~~~~~----t~eev~~l~~~~~~~~~ 500 (508)
|||+++.++ +++|++.++++|.+.++
T Consensus 415 LRIg~~A~ttrg~teedi~~iad~l~~~l~ 444 (493)
T PRK13580 415 IRLGTPALTTLGMGSDEMDEVAELIVKVLS 444 (493)
T ss_pred EEeccchhhhcCCCHHHHHHHHHHHHHHHH
Confidence 999999855 59999999999988765
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-24 Score=222.49 Aligned_cols=340 Identities=12% Similarity=0.055 Sum_probs=225.4
Q ss_pred CCCeeeeCCCCCCC-CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC--C-CCceEEEcCChHH
Q 010538 39 NGTVYLDHAGATLY-SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS--M-KDYKCIFTSGATA 114 (508)
Q Consensus 39 ~~~iyld~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~--~-~~~~i~~t~g~t~ 114 (508)
++.+.|+.+....+ ++.+.+++.+.. .. ....|........+.+++.+.+++++|++ + + +|++|+|+++
T Consensus 29 ~~~i~l~~g~p~~~~~~~~~~~~~~~~-~~----~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~--~i~it~g~~~ 101 (384)
T PRK12414 29 HDALNLSQGAPNFAPDPALVEGVARAM-RD----GHNQYAPMAGIAALREALAEKTERLYGARYDPAS--EVTVIASASE 101 (384)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHH-Hh----CCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCC--cEEEECChHH
Confidence 56889988765544 444555543322 21 11223222224566677778888888874 3 4 6999999999
Q ss_pred HHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc-cCccccccccccccccccchhhhhcCCCCC
Q 010538 115 ALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA-VDNDGLSESLVTSTKISLLPIQRRKGASFP 193 (508)
Q Consensus 115 al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~-~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~ 193 (508)
|+.+++.++ ..+|++|+++...|+.+..+.+ ..|.+++.+|++.+ ..+ |++.++ +++
T Consensus 102 al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~---~~g~~~~~v~~~~~~~~~---------------d~~~l~--~~l- 159 (384)
T PRK12414 102 GLYAAISAL-VHPGDEVIYFEPSFDSYAPIVR---LQGATPVAIKLSPEDFRV---------------NWDEVA--AAI- 159 (384)
T ss_pred HHHHHHHHh-cCCCCEEEEeCCCccchHHHHH---HcCCEEEEEecCcccccc---------------CHHHHH--hhc-
Confidence 999999998 6889999999888877665544 35899999998642 233 678888 555
Q ss_pred CCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCCCCCCCC----C
Q 010538 194 ERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQPPDLSKY----P 265 (508)
Q Consensus 194 ~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d~~~~----~ 265 (508)
.+++++|++++++||||.+++.+++.++++ +|+++|+++++|+++.. +.....+... +
T Consensus 160 -----~~~~~~v~i~~p~NPTG~~~s~~~~~~i~~---------~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~ 225 (384)
T PRK12414 160 -----TPRTRMIIVNTPHNPSATVFSAADLARLAQ---------LTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAE 225 (384)
T ss_pred -----CcccEEEEEcCCCCCCCcCCCHHHHHHHHH---------HHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccC
Confidence 357899999999999999998777666655 45559999999999863 2111122211 2
Q ss_pred CcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHH
Q 010538 266 VDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGF 343 (508)
Q Consensus 266 ~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al 343 (508)
..+++.|++|.|| .+| +||+++++++++.+...... .....+.....++..++
T Consensus 226 ~~i~~~SfSK~~~-~pGlRiG~~v~~~~l~~~l~~~~~~------------------------~~~~~s~~~q~a~~~~l 280 (384)
T PRK12414 226 RSVIVSSFGKSYH-VTGWRVGYCLAPAELMDEIRKVHQF------------------------MVFSADTPMQHAFAEAL 280 (384)
T ss_pred cEEEEeccccccc-CccceEEEEecCHHHHHHHHHHHhh------------------------eecCCCcHHHHHHHHHh
Confidence 3489999999998 557 79999999887766543110 01122333333333343
Q ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhh
Q 010538 344 NLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASL 423 (508)
Q Consensus 344 ~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~ 423 (508)
+. ......+.+.+++.++++.+.|++. ++.+..+.+ +.++|++++..... .+...+.+.+.+
T Consensus 281 ~~--~~~~~~~~~~~~~~r~~l~~~L~~~-------g~~~~~~~g--------g~~~~~~~~~~~~~-~~~~~~~~~l~~ 342 (384)
T PRK12414 281 AE--PASYLGLGAFYQRKRDLLARELAGS-------RFELLPSEG--------SFFMLARFRHFSDE-SDSDFVLRLIRD 342 (384)
T ss_pred cC--ChHHHHHHHHHHHHHHHHHHHHHhC-------CCeecCCCc--------ceEEEEcccccCCC-CHHHHHHHHHHh
Confidence 31 1123456777888899999999876 566654432 56777777542110 112234467788
Q ss_pred CCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhh
Q 010538 424 SGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFD 497 (508)
Q Consensus 424 ~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~ 497 (508)
+||.+.+|..|.... ...+++|||++. ++++++..++.|.+
T Consensus 343 ~gV~v~pg~~f~~~~-------------------------------~~~~~iRis~~~--~~~~~~~~~~rl~~ 383 (384)
T PRK12414 343 ARVATIPLSAFYTDG-------------------------------TDTGLIRLSFSK--DDATLVEGARRLCS 383 (384)
T ss_pred CCEEEecchhhcCCC-------------------------------CCCCEEEEEecC--CHHHHHHHHHHHhh
Confidence 999999987653211 125789999995 68888888887764
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-24 Score=219.94 Aligned_cols=295 Identities=12% Similarity=0.047 Sum_probs=200.5
Q ss_pred HHHHHHHHHHc----CC--CCCCceEEEcCChHHHHHHHHhhcCCCCC---CeEEEecccccchHHHHHHHHhcCCeEEE
Q 010538 87 RAAREQVLDYF----NA--SMKDYKCIFTSGATAALKLVGEAFPWSHQ---SSYMYTMENHNSVLGIREYALSQGAAAFA 157 (508)
Q Consensus 87 ~~~r~~la~~~----~~--~~~~~~i~~t~g~t~al~~~~~~l~~~~g---~~vl~~~~~h~s~~~~~~~~~~~G~~v~~ 157 (508)
..+|+.+++++ |. +++. +|++|+|+++++..++.++. .+| +.|+++...|+.+.... +..|++++.
T Consensus 39 ~~lr~aia~~~~~~~g~~~~~~~-~Iiit~Gs~~ai~~~~~~~~-~~g~~~d~Vl~~~p~y~~~~~~~---~~~g~~~~~ 113 (350)
T TIGR03537 39 KALREAISGWFERRFGVKLDPDA-QVLPSAGSKEAIFHFPLVFI-DPEEDRRRVIFGTPGYPVYERGA---LFAGGEPTA 113 (350)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCC-cEEEcCChHHHHHHHHHHHc-CCCCCCceEEEcCCCCcchHHHH---HhcCCEEEE
Confidence 34455555544 64 4431 69999999999999999884 444 69999987777665554 456999999
Q ss_pred EccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccC
Q 010538 158 IDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEIS 237 (508)
Q Consensus 158 v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~ 237 (508)
++++.+..+ +.|+++++ +++ .++++++++++++||||.++|.+++.++++
T Consensus 114 v~~~~~~~~-------------~~d~~~l~--~~~------~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~--------- 163 (350)
T TIGR03537 114 VKLKKEDGF-------------LLRLEKVE--KSI------LEETKIVWINYPHNPTGATAPRSYLKETIA--------- 163 (350)
T ss_pred cccCcccCC-------------ccCHHHHH--Hhh------hhccEEEEEeCCCCCcCcccCHHHHHHHHH---------
Confidence 998632221 11688888 554 356899999999999999999665555554
Q ss_pred CCCCCCeEEEEeccccC---CCCCCCCCCCC--CcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecc
Q 010538 238 PFSKGRWMVLIDAAKGC---VTQPPDLSKYP--VDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASI 310 (508)
Q Consensus 238 ~~~~~g~~vivD~a~~~---g~~~~d~~~~~--~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~ 310 (508)
+|+++|+++|+|++++. +..+.++...+ ..+++.|++|.+| .+| +|+++.++++.+.+.....
T Consensus 164 ~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g-~~GlRiG~~~~~~~~~~~~~~~~~--------- 233 (350)
T TIGR03537 164 MCREHGIILCSDECYTEIYFGEPPHSALEVGIENVLAFHSLSKRSG-MTGYRSGFVAGDEKLISFLRKLRA--------- 233 (350)
T ss_pred HHHHcCcEEEEeccccccccCCCCCchhhcCcCCEEEEeecccccC-CccccceeeecCHHHHHHHHHHHH---------
Confidence 34459999999999863 33333333222 3488889999998 447 8999988887766654311
Q ss_pred cchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCC
Q 010538 311 ADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSE 390 (508)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~ 390 (508)
.+..++++. ...++.+++.. ....+.++++++++++.+.+.|++. ++++..+.+
T Consensus 234 --------------~~~~~~~~~-~q~~~~~~l~~--~~~~~~~r~~l~~~~~~~~~~l~~~-------g~~~~~~~g-- 287 (350)
T TIGR03537 234 --------------NFGVASPDF-VQAAAKAAWSD--DNHVLERRKIFKRKRDLFIEFFNKV-------GLEYLYPDA-- 287 (350)
T ss_pred --------------hhccCCCHH-HHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHHHHHC-------CCcccCCCe--
Confidence 111122222 22333333331 2235677888889999999999875 566554432
Q ss_pred cccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCC
Q 010538 391 VSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGK 470 (508)
Q Consensus 391 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 470 (508)
+.++++++++. ++..++.+.|.++||.+.+|..|...
T Consensus 288 ------~~~~~~~~~~~----~~~~~l~~~L~~~gv~v~~g~~f~~~--------------------------------- 324 (350)
T TIGR03537 288 ------TFYLWVKVPSG----IDAKDYALRLLENGIVVAPGENFGSG--------------------------------- 324 (350)
T ss_pred ------EEEEEEECCCC----CCHHHHHHHHHHCCEEEcCchhhCCC---------------------------------
Confidence 56788888653 23456888888899999998755321
Q ss_pred CCceEEEecCCCCCHHHHHHHHHhhhh
Q 010538 471 PTGAIRVSFGYMSTFEDAKVNRCSSFD 497 (508)
Q Consensus 471 ~~~~iRis~~~~~t~eev~~l~~~~~~ 497 (508)
..+++|+|+. .+.++++..++.+++
T Consensus 325 ~~~~~Ri~~~--~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 325 EEGYVRVALV--PTLEECEEALRLWER 349 (350)
T ss_pred CCCEEEEEec--CCHHHHHHHHHHHhc
Confidence 2578999986 578999998888765
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=231.87 Aligned_cols=331 Identities=14% Similarity=0.078 Sum_probs=226.0
Q ss_pred ccchhhhhhHHHHHHHHHHHHHcCCCC-----------CCceEEEcCChHHHHHHHHhhcCC---C--------------
Q 010538 75 QSDISLATCDIVRAAREQVLDYFNASM-----------KDYKCIFTSGATAALKLVGEAFPW---S-------------- 126 (508)
Q Consensus 75 ~~~~~~~~~~~~~~~r~~la~~~~~~~-----------~~~~i~~t~g~t~al~~~~~~l~~---~-------------- 126 (508)
.+..++....+...+.++++++++..+ +...-+||+|+|+|+..++.+... .
T Consensus 120 ~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~ 199 (522)
T TIGR03799 120 KIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLF 199 (522)
T ss_pred eeecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccch
Confidence 344556677888889999999986321 111468999999998765443211 0
Q ss_pred --------CCCeEEEecccccchHHHHHHHHhcCC---eEEEEccCCccCccccccccccccccccchhhhhcCCCCCCC
Q 010538 127 --------HQSSYMYTMENHNSVLGIREYALSQGA---AAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPER 195 (508)
Q Consensus 127 --------~g~~vl~~~~~h~s~~~~~~~~~~~G~---~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~ 195 (508)
++.+|+++..+|+|+....+.+ |+ +++.||.+.++.+ |+++++ ++|++.
T Consensus 200 ~~~~~~~~~~~~v~~S~~~H~S~~kaa~~l---glg~~~v~~vp~d~~g~~---------------d~~~L~--~~i~~~ 259 (522)
T TIGR03799 200 AALKHYGYDGLAILVSERGHYSLGKAADVL---GIGRDNLIAIKTDANNRI---------------DVDALR--DKCAEL 259 (522)
T ss_pred hhhhhccCCceEEEECCCchHHHHHHHHHc---CCCcccEEEEEeCCCCcC---------------CHHHHH--HHHHHH
Confidence 2357999999999987665554 55 7999999888877 688888 666321
Q ss_pred CCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCC-----CCCC-CCcEE
Q 010538 196 DPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPD-----LSKY-PVDFV 269 (508)
Q Consensus 196 ~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d-----~~~~-~~D~~ 269 (508)
...+.++-.|+.++.++.||.+.|+++|.++|++ +|++++||++++.+....+ +... ++|++
T Consensus 260 ~~~g~~~~~vvataGtt~tGaiDpl~eIa~i~~~------------~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSi 327 (522)
T TIGR03799 260 AEQNIKPLAIVGVAGTTETGNIDPLDEMADIAQE------------LGCHFHVDAAWGGATLLSNTYRHLLKGIERADSV 327 (522)
T ss_pred HHCCCCcEEEEEEecCcCCCCcCCHHHHHHHHHH------------cCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEE
Confidence 1112223334445778899999999999999998 8999999999998776655 4544 79999
Q ss_pred EEeccccccCCCcceEEEEech-hHhhhccc--cc-cCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHH
Q 010538 270 VMSFYKIFGYPTGLGALIMRND-AAKLLKNT--YF-SGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNL 345 (508)
Q Consensus 270 ~~S~~K~~g~P~G~G~l~~~~~-~~~~l~~~--~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~ 345 (508)
++|+|||+++|.|+|+++++++ ..+.+.+. +. ..+ ..+ ....+++ |+.+... ..++.++++
T Consensus 328 t~d~HK~l~~P~g~G~llvr~~~~~~~~~~~~~Yl~~~~-------~~d------~~~~~le-gsR~~~a-l~lw~aL~~ 392 (522)
T TIGR03799 328 TIDAHKQLYVPMGAGMVLFKDPALMSAIEHHAEYILRKG-------SKD------LGSHTLE-GSRPGMA-MLVYAGLHI 392 (522)
T ss_pred EEChhhcCCcCcccEEEEEeCHHHHHHhccCcchhcCCC-------CCc------cccceee-cCcchHH-HHHHHHHHH
Confidence 9999998777999999999864 33334331 11 000 001 1134556 4444444 468999999
Q ss_pred HHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCC------------c--
Q 010538 346 INSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGS------------W-- 411 (508)
Q Consensus 346 ~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------------~-- 411 (508)
+...|++.+.++..+++++|.+.|++. ++++++.++. .++|+|++...... +
T Consensus 393 lG~~G~~~ii~~~~~la~~l~~~L~~~------~~~el~~~p~--------l~iv~Fr~~p~~~~~~l~~~~~~~~~~~~ 458 (522)
T TIGR03799 393 IGRKGYELLIDQSIEKAKYFADLIQQQ------PDFELVTEPE--------LCLLTYRYVPEEVQQALAKADEEQREKIN 458 (522)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhC------CCeEEecCCC--------ccEEEEEEeChhhcccccccchhhhhhHH
Confidence 999999999999999999999999987 4899998764 68999996431100 0
Q ss_pred --cCH--HHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecC-CCCCHH
Q 010538 412 --FGY--REVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFG-YMSTFE 486 (508)
Q Consensus 412 --~~~--~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~-~~~t~e 486 (508)
++. ..+.+.+.+.|...-+...-.+.. ..+.....+|+++. ..+|.+
T Consensus 459 ~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~----------------------------~~g~~~~~lR~~~~np~tt~~ 510 (522)
T TIGR03799 459 ELLDRLTKFIQKRQREAGKSFVSRTRLTPAQ----------------------------YDHQPTVVFRVVLANPLTTHE 510 (522)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEEEecccc----------------------------cCCCCcEEEEEEecCCCCCHH
Confidence 010 245566666666643321110000 00112357999985 778999
Q ss_pred HHHHHHHh
Q 010538 487 DAKVNRCS 494 (508)
Q Consensus 487 ev~~l~~~ 494 (508)
+|+.+++.
T Consensus 511 ~i~~~l~~ 518 (522)
T TIGR03799 511 ILQDILDE 518 (522)
T ss_pred HHHHHHHH
Confidence 99998764
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.2e-24 Score=214.52 Aligned_cols=349 Identities=15% Similarity=0.114 Sum_probs=247.5
Q ss_pred CeeeeCCCCCCCCHHHHHHHHHHhhccccC---CCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEc-CChHHHH
Q 010538 41 TVYLDHAGATLYSELQMEAIFRDFTTNVYG---NPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFT-SGATAAL 116 (508)
Q Consensus 41 ~iyld~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t-~g~t~al 116 (508)
...|. +|.+.+|++|++++.++++. +.+ ..-.....+....++++++++.+.++++++. +|+|+|. +|+|.++
T Consensus 5 ~~nF~-aGPa~lp~~Vl~~~~~~~~~-~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~-~y~Vlfl~GggT~~~ 81 (364)
T PRK12462 5 QLNFS-GGPGALPDTVLEQVRQAVVE-LPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPD-EYGVVFLQGGSSLQF 81 (364)
T ss_pred cceec-CCCcCCCHHHHHHHHHHHhc-ccccCccccccccccHHHHHHHHHHHHHHHHHhCCCC-CCeEEEEeccHHHHH
Confidence 34444 44556799999998877653 211 0111233456688999999999999999954 3677666 5599999
Q ss_pred HHHHhhcCCCCCCeEE-EecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCC
Q 010538 117 KLVGEAFPWSHQSSYM-YTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPER 195 (508)
Q Consensus 117 ~~~~~~l~~~~g~~vl-~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~ 195 (508)
..+...+ ..+|+.++ +....+-+ ..|.+.+++.| .+..+..........+ +++++++
T Consensus 82 ea~~~Nl-l~~g~~~~~~~~tG~fg-~r~~~ea~~~g-~v~~~~~~~~~~~~~~-----------p~~~~~~-------- 139 (364)
T PRK12462 82 SMIPMNF-SRPGAAAPEYVTTGYWS-RKAIGEASRVA-AMRVVWDGAASGYRTL-----------PSLAELD-------- 139 (364)
T ss_pred HHHHHHc-CCCCCcEEEEEeCCHHH-HHHHHHHHhcC-CceEecCcCCCCCCcC-----------CCHHHhc--------
Confidence 9999998 56666443 22222211 23566677777 5655543221111110 1233343
Q ss_pred CCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccc
Q 010538 196 DPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYK 275 (508)
Q Consensus 196 ~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K 275 (508)
.+++.+.|.++|..+.||+.+| ++.+. +++++++|++.+++..|+|+.++ |+++++.+|
T Consensus 140 --~~~d~~~v~~t~NETstGv~~~-----~~~~~------------~~~llvvD~sS~~~s~pid~~~~--dvi~agsQK 198 (364)
T PRK12462 140 --WDARAPFRHYVSNETVEGLQFP-----DAAGL------------PDSPLIADMSSDFMSRPFDVEAY--GMVYAHAQK 198 (364)
T ss_pred --cCCCCcEEEEccCCCCceEecC-----ccccc------------CCCeEEEEcCchhhCCCCChHHc--cEEEeeccc
Confidence 2346788999999999999998 33333 68999999999999999999986 999999999
Q ss_pred cccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhc--ChHH
Q 010538 276 IFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSL--TVPA 353 (508)
Q Consensus 276 ~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~--g~~~ 353 (508)
.+| |+|+++++++++++++..+.++ ...+|....+ .....-||++..++++..+++|+.+. |++.
T Consensus 199 nlg-P~Gltvvivs~~al~~~~~~~p---------~~ldy~~~~~---~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~ 265 (364)
T PRK12462 199 NLG-PAGVTVAIIRRALLERVPDTLP---------PMLDFRTHVE---HRSNYNTPPVFAIYVMALVLRWIRDEIGGVHA 265 (364)
T ss_pred cCC-CCceEEEEECHHHHhhccccCC---------chhhHHHHHh---cCCCCCCchHHHHHHHHHHHHHHHHhccCHHH
Confidence 999 9999999999999887654321 1112222211 12233499999999999999999876 9999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCceEEEec-CCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCC
Q 010538 354 ICRHIASLGMYVRKVLLSLRHENGADVCTIYG-TYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGC 432 (508)
Q Consensus 354 i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~ 432 (508)
+.++.++.++.+++.+.+.. ++.... .+. .|+...|+|++.+.+ + ..++.+.++++|+.--.|+
T Consensus 266 ~~~r~~~ka~~ly~~id~~~------~~~~~~~~~~-----~RS~mnv~f~~~~~~---l-~~~f~~~a~~~gl~~lkGh 330 (364)
T PRK12462 266 MRDINARKAAMLYATLDALN------EVIDCHAHRA-----ARSTMNVAFRFRQPR---L-DTLFKEQSTEAGFCGLSGH 330 (364)
T ss_pred HHHHHHHHHHHHHHHHHhCC------CcccCCCChh-----hcCcceEEEEcCCHH---H-HHHHHHHHHHCCCccccCC
Confidence 99999999999999999874 343222 222 345677888876532 1 2357888899999976654
Q ss_pred CCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 433 FCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 433 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
+.-|.+|+|+-...+.|+|++|++.|++|-+
T Consensus 331 -------------------------------------r~vgg~Ras~yna~~~e~v~~L~~fm~~f~~ 361 (364)
T PRK12462 331 -------------------------------------RSIGGIRASLYNAVSEQAVSRLCAFLKDFAI 361 (364)
T ss_pred -------------------------------------cccCceEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 1256799999999999999999999999864
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.9e-24 Score=219.97 Aligned_cols=337 Identities=14% Similarity=0.037 Sum_probs=247.9
Q ss_pred CeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHH
Q 010538 41 TVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVG 120 (508)
Q Consensus 41 ~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~ 120 (508)
..+|.|..+.......+..++... .+..++|+...+.+..+.++..++.+++++++|.+++++.-++|+|+|+++..++
T Consensus 91 ~~~~gYp~n~~~d~s~l~~~l~~~-~nN~Gdp~~~s~~~~~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al 169 (470)
T PLN02263 91 KHHLGYPYNLDFDYGALGQLQHFS-INNLGDPFIESNYGVHSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGI 169 (470)
T ss_pred cceeCCCCcccCChhhHHHHHHhh-ccCCCCccccCCcchhHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHH
Confidence 458888666665456666655533 3334556543222234677888899999999999875446899999999998776
Q ss_pred hhcC-CCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCC
Q 010538 121 EAFP-WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAG 199 (508)
Q Consensus 121 ~~l~-~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~ 199 (508)
.+.. ..++.++++++..|+|+....+++ |++++.||.+.++.+ |+++++ ++|.++ .
T Consensus 170 ~aARe~~~~~vvy~S~~aH~Sv~KAa~ll---gi~~~~Vp~d~~g~m---------------D~~aL~--~aI~~d---~ 226 (470)
T PLN02263 170 LVGREVFPDGILYASRESHYSVFKAARMY---RMECVKVDTLVSGEI---------------DCADFK--AKLLAN---K 226 (470)
T ss_pred HHHHhhcCCcEEEEcCCccHHHHHHHHhc---CCcceEeccCCCCcC---------------cHHHHH--HHHHhC---C
Confidence 6653 223458899999999998777664 899999999887777 688898 776432 2
Q ss_pred CCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCC-----eEEEEeccccCCCCC-------CCCCCCCCc
Q 010538 200 DAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGR-----WMVLIDAAKGCVTQP-------PDLSKYPVD 267 (508)
Q Consensus 200 ~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g-----~~vivD~a~~~g~~~-------~d~~~~~~D 267 (508)
.++.+|+.+.+++++|.+.|+++|.++|++ +| +|++||++.+....| +++.. .+|
T Consensus 227 ~~P~iVvataGTT~~GAiDpi~eIa~i~~~------------~g~~~~~iwlHVDAA~GG~~lPf~~~~~~~df~~-~vD 293 (470)
T PLN02263 227 DKPAIINVNIGTTVKGAVDDLDLVIKTLEE------------CGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFKK-PIG 293 (470)
T ss_pred CCcEEEEEEecCCCCcCCCCHHHHHHHHHH------------cCCccCCeeEEEeccchhhHhhhcccccccCCCc-Ccc
Confidence 356888899999999999999999999997 66 599999998764443 44444 499
Q ss_pred EEEEeccccccCCCcceEEEEechhHhhhcc--ccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHH
Q 010538 268 FVVMSFYKIFGYPTGLGALIMRNDAAKLLKN--TYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNL 345 (508)
Q Consensus 268 ~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~ 345 (508)
.++.++|||++.|.++|+++++++....+.. .++.. ......|+.+....+.++.+++.
T Consensus 294 SIsvD~HK~l~~P~~cgvll~R~~~~~~~~~~~~Yl~~-------------------~d~ti~gSR~g~~al~lW~~L~~ 354 (470)
T PLN02263 294 SVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLAS-------------------RDATIMGSRNGHAPIFLWYTLNR 354 (470)
T ss_pred EEEECCccccCCCcCEEEEEEehhhHhhhccChHhhCC-------------------CCCCcCCCCCcHHHHHHHHHHHH
Confidence 9999999998889999999999765433221 11111 11123466666667788889998
Q ss_pred HHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCC
Q 010538 346 INSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSG 425 (508)
Q Consensus 346 ~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~g 425 (508)
+...|+.++.+++.++++++.+.|++. ++..+..+. +++|.|..+.. ....+|
T Consensus 355 ~G~~G~~~~i~~~~~~A~~l~~~l~~~-------g~~~~~~p~--------s~~V~f~~p~~------------~~~~~g 407 (470)
T PLN02263 355 KGYRGFQKEVQKCLRNAHYLKDRLREA-------GISAMLNEL--------SSTVVFERPKD------------EEFVRR 407 (470)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHhC-------CCeEEeCCC--------ceEEEEecCch------------HHhhcc
Confidence 888899999999999999999999987 566655443 67888875431 112356
Q ss_pred CeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 426 IQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 426 I~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
..+.+ .++.+|+.+....|.+.+|.+++-|++..+
T Consensus 408 W~L~~----------------------------------------~~~~~Hivvmphv~~~~id~fi~DL~~~~~ 442 (470)
T PLN02263 408 WQLAC----------------------------------------QGNIAHVVVMPSVTIEKLDYFLKELVEKRS 442 (470)
T ss_pred eEEcc----------------------------------------CCCcEEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence 66543 135699999988899999999998886543
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-24 Score=224.51 Aligned_cols=340 Identities=15% Similarity=0.086 Sum_probs=222.9
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc----C--CCCCCceEEEcCC
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF----N--ASMKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~--~~~~~~~i~~t~g 111 (508)
++.++|+.+.... +++.+.+++.+ .+.+ ....|... .....+|+.+|+++ | ++++ +|++|+|
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~~~~~-~~~~----~~~~Y~~~----~g~~~lr~~ia~~~~~~~~~~~~~~--~i~~t~G 98 (388)
T PRK07337 30 RDIIHMGIGEPDFTAPEPVVEAAAR-ALRR----GVTQYTSA----LGLAPLREAIAAWYARRFGLDVAPE--RIVVTAG 98 (388)
T ss_pred CCEEEeCCcCCCCCCCHHHHHHHHH-HHhc----CCCCCCCC----CCCHHHHHHHHHHHHHHhCCCCChH--hEEEecC
Confidence 6789999988664 35566666544 3321 11112211 11345666666665 4 4777 8999999
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCcc--CccccccccccccccccchhhhhcC
Q 010538 112 ATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAV--DNDGLSESLVTSTKISLLPIQRRKG 189 (508)
Q Consensus 112 ~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~--~~~~l~~~~~~~~~~~~d~~~l~~~ 189 (508)
+++|+.+++.++ .++|++|+++...|+++..+. +..|++++.+|++.+. .+ |+++++
T Consensus 99 ~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~---~~~g~~~~~~~~~~~~~~~~---------------~~~~l~-- 157 (388)
T PRK07337 99 ASAALLLACLAL-VERGDEVLMPDPSYPCNRHFV---AAAEGRPVLVPSGPAERFQL---------------TAADVE-- 157 (388)
T ss_pred cHHHHHHHHHHh-cCCCCEEEEeCCCchhhHHHH---HHcCCEEEEeecCCccCCcC---------------CHHHHH--
Confidence 999999999998 688999999998888765544 4468999999986432 33 688888
Q ss_pred CCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC-CCC--CCCCCCCCC
Q 010538 190 ASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC-VTQ--PPDLSKYPV 266 (508)
Q Consensus 190 ~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~-g~~--~~d~~~~~~ 266 (508)
+.+ ++++++|++++++||||.+++.+++.++++ +|+++++++|+|+++.. ... +.+....+.
T Consensus 158 ~~~------~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~---------~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 222 (388)
T PRK07337 158 AAW------GERTRGVLLASPSNPTGTSIAPDELRRIVE---------AVRARGGFTIVDEIYQGLSYDAAPVSALSLGD 222 (388)
T ss_pred hhc------CccceEEEEECCCCCCCcCcCHHHHHHHHH---------HHHHCCCEEEEeccccccccCCCCcChhhccC
Confidence 544 467899999999999999999776666665 45559999999998752 211 222222333
Q ss_pred c-EEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHH
Q 010538 267 D-FVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGF 343 (508)
Q Consensus 267 D-~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al 343 (508)
+ +++.|++|.|| .+| +||+++++++++.+......+ . ...+.....++..++
T Consensus 223 ~vi~~~S~SK~~~-~~G~RiG~~~~~~~l~~~l~~~~~~~-----------------------~-~~~s~~~q~~~~~~l 277 (388)
T PRK07337 223 DVITINSFSKYFN-MTGWRLGWLVVPEALVGTFEKLAQNL-----------------------F-ICASALAQHAALACF 277 (388)
T ss_pred CEEEEEechhhcC-CchhheeeeecCHHHHHHHHHHHHHh-----------------------c-cCCChHHHHHHHHHh
Confidence 4 56779999998 447 899999988876665431110 1 122333333333343
Q ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEe-cCCCCCcccCCCCceEEEEeeCCC-CCccCHHHHHH-H
Q 010538 344 NLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIY-GTYTSEVSYHDTGSMVSFNLKRPD-GSWFGYREVEK-L 420 (508)
Q Consensus 344 ~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~l~~-~ 420 (508)
+.-....+.+.++++++.++++.+.|++. ++.+. .|.+ +.++|+++++.. ....+..++.. +
T Consensus 278 ~~~~~~~~~~~~~~~~~~r~~~~~~L~~~-------~~~~~~~p~~--------g~f~~~~~~~~~~~~~~~~~~~~~~l 342 (388)
T PRK07337 278 EPDTLAIYERRRAEFKRRRDFIVPALESL-------GFKVPVMPDG--------AFYVYADCRGVAHPAAGDSAALTQAM 342 (388)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHhc-------CCccccCCCe--------eEEEEEecccccCCCCCCHHHHHHHH
Confidence 21000114566777888889999999875 34432 3332 789999986421 01123344554 4
Q ss_pred HhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 421 ASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 421 L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
++++||.+.+|..|.... ..+++|+|++. +.+++...++.|.+++
T Consensus 343 l~~~gv~v~pg~~f~~~~--------------------------------~~~~~Ri~~~~--~~~~l~~~l~rl~~~l 387 (388)
T PRK07337 343 LHDAGVVLVPGRDFGPHA--------------------------------PRDYIRLSYAT--SMSRLEEAVARLGKLF 387 (388)
T ss_pred HHhCCEEEeCchhhCCCC--------------------------------CCCEEEEEecC--CHHHHHHHHHHHHHHh
Confidence 678999999987653211 25799999995 5788888888877654
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-24 Score=223.96 Aligned_cols=337 Identities=14% Similarity=0.102 Sum_probs=220.7
Q ss_pred CCCeeeeCCCCCCC-CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc------CCCCCCceEEEcCC
Q 010538 39 NGTVYLDHAGATLY-SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF------NASMKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~------~~~~~~~~i~~t~g 111 (508)
++.+.|+.+..... ++.+.+++ ....... ...|.... ...++|+.+|+++ +++++ +|++|+|
T Consensus 33 ~~~i~l~~~~~~~~~~~~~~~~~-~~~~~~~----~~~Y~~~~----g~~~lr~~ia~~~~~~~g~~~~~~--~i~~t~G 101 (391)
T PRK08361 33 ENVISLGIGEPDFDTPKNIKEAA-KRALDEG----WTHYTPNA----GIPELREAIAEYYKKFYGVDVDVD--NVIVTAG 101 (391)
T ss_pred cCeEEcCCCCCCCCCCHHHHHHH-HHHHhcC----CCCCCCCC----CcHHHHHHHHHHHHHHhCCCCCcc--cEEEeCC
Confidence 46788887765543 44444443 3332211 11121111 1345666666665 36677 8999999
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCC
Q 010538 112 ATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGAS 191 (508)
Q Consensus 112 ~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~ 191 (508)
+++|+.+++.++ ..+|+.|++++..|+++... ++..|++++.+|++.++.. ..|++.++ +.
T Consensus 102 ~~~al~~~~~~l-~~~g~~Vlv~~p~y~~~~~~---~~~~g~~~~~v~~~~~~~~-------------~~d~~~l~--~~ 162 (391)
T PRK08361 102 AYEATYLAFESL-LEEGDEVIIPDPAFVCYVED---AKIAEAKPIRIPLREENEF-------------QPDPDELL--EL 162 (391)
T ss_pred hHHHHHHHHHHh-cCCCCEEEEcCCCCcccHHH---HHHcCCEEEEEecCCccCC-------------CCCHHHHH--Hh
Confidence 999999999988 67899999998777776544 4446999999998754321 11688888 55
Q ss_pred CCCCCCCCCCceEEEEeCCCCCCccccCH---HHHHHHHcCCccccccCCCCCCCeEEEEeccccCC----CCCCCCCC-
Q 010538 192 FPERDPAGDAYNLFAFPSECNFSGSRFNL---DLINIMKKNPERILEISPFSKGRWMVLIDAAKGCV----TQPPDLSK- 263 (508)
Q Consensus 192 l~~~~~~~~~t~lv~~~~~~n~tG~~~~i---~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g----~~~~d~~~- 263 (508)
+ .++++++++++++||||.++|. ++|.++|++ +++++|+|++++.. .....+..
T Consensus 163 i------~~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~------------~~~~ii~De~y~~~~~~~~~~~~~~~~ 224 (391)
T PRK08361 163 I------TKRTRMIVINYPNNPTGATLDKEVAKAIADIAED------------YNIYILSDEPYEHFLYEGAKHYPMIKY 224 (391)
T ss_pred c------ccccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHH------------cCeEEEEEcccccceeCCCCCCCHhhc
Confidence 4 4568999999999999999995 555555555 99999999998632 11222221
Q ss_pred -CCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHH
Q 010538 264 -YPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIR 340 (508)
Q Consensus 264 -~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~ 340 (508)
.+.++++.|++|.|| ++| +|++++++++++.+..... ...++.+.....++.
T Consensus 225 ~~~~~i~~~s~SK~~~-~~GlRiG~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~q~~~~ 279 (391)
T PRK08361 225 APDNTILANSFSKTFA-MTGWRLGFVIAPEQVIKDMIKLHA------------------------YIIGNVASFVQIAGI 279 (391)
T ss_pred CCCCEEEEecCchhcC-CcHhhhhhhccCHHHHHHHHHHHh------------------------hhccCCChHHHHHHH
Confidence 245789999999998 558 8999999888766543210 011122222222223
Q ss_pred HHHHHHHh-cChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHH
Q 010538 341 HGFNLINS-LTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEK 419 (508)
Q Consensus 341 ~al~~~~~-~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~ 419 (508)
.+++.-.. ..++.+++++.+.++.+.+.|+++ +++++..+.+ +.++|+++++.. ++..++.+
T Consensus 280 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~------~~~~~~~p~g--------~~~~~~~l~~~~---~~~~~l~~ 342 (391)
T PRK08361 280 EALRSKESWKAVEEMRKEYNERRKLVLKRLKEM------PHIKVFEPKG--------AFYVFANIDETG---MSSEDFAE 342 (391)
T ss_pred HHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhC------CCCeecCCCE--------EEEEEEECCCCC---CCHHHHHH
Confidence 33321000 136778888899999999999886 3677666543 567888886311 23345666
Q ss_pred HH-hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 420 LA-SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 420 ~L-~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
.| +++||.+.+|..|... ..+++||+++. +.++++..++.|+++
T Consensus 343 ~l~~~~gv~v~pg~~f~~~---------------------------------~~~~iRi~~~~--~~~~l~~al~~l~~~ 387 (391)
T PRK08361 343 WLLEKARVVVIPGTAFGKA---------------------------------GEGYIRISYAT--SKEKLIEAMERMEKA 387 (391)
T ss_pred HHHHhCCEEEcCchhhCCC---------------------------------CCCEEEEEecC--CHHHHHHHHHHHHHH
Confidence 65 5689999998754321 25789999994 677888888877766
Q ss_pred hh
Q 010538 499 VN 500 (508)
Q Consensus 499 ~~ 500 (508)
++
T Consensus 388 l~ 389 (391)
T PRK08361 388 LE 389 (391)
T ss_pred Hh
Confidence 54
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8e-24 Score=215.79 Aligned_cols=325 Identities=17% Similarity=0.138 Sum_probs=237.5
Q ss_pred CCCeeeeCCCCCCCCH-HHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC-CCCCCceEEEcCChHHHH
Q 010538 39 NGTVYLDHAGATLYSE-LQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN-ASMKDYKCIFTSGATAAL 116 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~-~~~~~~~i~~t~g~t~al 116 (508)
++++.|+.+-....|+ .+.+++ ..........|.. ...+.++.++++++ .+++ .|+.++|+++.+
T Consensus 22 ~~~i~LssNenP~gp~~~~~~~~-~~~~~~~~rYPd~----------~~~~l~~a~a~~~~~~~~~--~V~~gnGsde~i 88 (356)
T COG0079 22 PGIIKLSSNENPYGPPPKVIEAI-RAALDKLNRYPDP----------DYRELRAALAEYYGVVDPE--NVLVGNGSDELI 88 (356)
T ss_pred ccceeecCCCCCCCCCHHHHHHH-HHHHHhhccCCCC----------cHHHHHHHHHHHhCCCCcc--eEEEcCChHHHH
Confidence 4689999988776654 444443 3333222222322 25678999999999 7778 899999999999
Q ss_pred HHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCC
Q 010538 117 KLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERD 196 (508)
Q Consensus 117 ~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~ 196 (508)
.++++++ ..+|+.|+++...|+.+ ...++..|++++.+|..+ ..+ |++.+. +++
T Consensus 89 ~~l~~~~-~~~gd~vl~~~Ptf~~Y---~~~a~~~g~~~~~v~~~~-~~~---------------d~~~~~--~~~---- 142 (356)
T COG0079 89 ELLVRAF-VEPGDTVLIPEPTFSMY---EIAAQLAGAEVVKVPLKE-FRL---------------DLDAIL--AAI---- 142 (356)
T ss_pred HHHHHHh-hcCCCEEEEcCCChHHH---HHHHHhcCCeEEEecccc-ccc---------------CHHHHH--Hhh----
Confidence 9999999 67889999887555444 344556799999999876 444 567777 444
Q ss_pred CCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCC--CCCCC-CCCcEEEEec
Q 010538 197 PAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQP--PDLSK-YPVDFVVMSF 273 (508)
Q Consensus 197 ~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~--~d~~~-~~~D~~~~S~ 273 (508)
.+++++|++++++||||..++.++|.+++.. +.+ +.+|++|+|+.--..+ +.+-. .+--++.-|+
T Consensus 143 --~~~~~lv~i~nPNNPTG~~~~~~~l~~l~~~---------~~~-~~~vVvDEAY~eF~~~~~~~l~~~~~nlivlRTf 210 (356)
T COG0079 143 --RDKTKLVFLCNPNNPTGTLLPREELRALLEA---------LPE-GGLVVIDEAYIEFSPESSLELLKYPPNLIVLRTF 210 (356)
T ss_pred --hcCCCEEEEeCCCCCCCCCCCHHHHHHHHHh---------CCC-CcEEEEeCchhhcCCchhhhhccCCCCEEEEEec
Confidence 3478999999999999999999999999995 444 8999999998642221 11111 1223778899
Q ss_pred cccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcCh
Q 010538 274 YKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTV 351 (508)
Q Consensus 274 ~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~ 351 (508)
+|.|| .+| +|++++++++++.+...... .+.|.++..+..++++.- ..+
T Consensus 211 SKa~g-LAGlRlGy~ia~~~~i~~l~~vr~p--------------------------~~v~~~a~~aa~aal~~~--~~~ 261 (356)
T COG0079 211 SKAFG-LAGLRVGYAIANPELIAALNKVRPP--------------------------FNVSSPALAAAIAALRDA--DYL 261 (356)
T ss_pred HHhhh-cchhceeeccCCHHHHHHHHHhcCC--------------------------CCCCHHHHHHHHHHcccH--HHH
Confidence 99999 667 89999999999887766322 234555566666565543 236
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccC
Q 010538 352 PAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTG 431 (508)
Q Consensus 352 ~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g 431 (508)
+...+++.+.++++.+.|+++ ++.-+.|+. .+++.+++++.+ ...+.+.|.++||.+|..
T Consensus 262 ~~~~~~~~~~r~rl~~~l~~~-------~~~~v~pS~--------aNFvlv~~~~~~-----~~~l~~~L~~~giivR~~ 321 (356)
T COG0079 262 EESVERIREERERLYAALKAL-------GLFGVFPSQ--------ANFVLVRVPDAE-----AAALAEALLKKGILVRDC 321 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-------CCCeecCCC--------CcEEEEECCCcc-----HHHHHHHHHHCCEEEEeC
Confidence 888899999999999999987 343233332 799999987622 124889999999999984
Q ss_pred CCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 432 CFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 432 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
.. .+ ..++++|||++ |.||.+++++++.++++
T Consensus 322 ~~--~~--------------------------------~~~~~lRitvg---t~een~~ll~AL~~~~~ 353 (356)
T COG0079 322 SS--VG--------------------------------LLPGYLRITVG---TPEENDRLLAALREVLK 353 (356)
T ss_pred CC--CC--------------------------------CCCCeEEEEeC---CHHHHHHHHHHHHHHHh
Confidence 32 11 12679999999 99999999999998765
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-24 Score=219.97 Aligned_cols=298 Identities=17% Similarity=0.146 Sum_probs=214.0
Q ss_pred HHHHHHHHHHHcCCC------CCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEc
Q 010538 86 VRAAREQVLDYFNAS------MKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAID 159 (508)
Q Consensus 86 ~~~~r~~la~~~~~~------~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~ 159 (508)
..++++.++++++.. ++ ++++++|+|+++..++.++ ..+|++|+++...|+++.... +..|.+++.++
T Consensus 38 ~~~l~~~l~~~l~~~~~~~~~~~--~~~~~~~~t~a~~~~~~~~-~~~g~~vl~~~~~~~~~~~~~---~~~~~~~~~i~ 111 (350)
T cd00609 38 LPELREAIAEWLGRRGGVDVPPE--EIVVTNGAQEALSLLLRAL-LNPGDEVLVPDPTYPGYEAAA---RLAGAEVVPVP 111 (350)
T ss_pred cHHHHHHHHHHHHHHhCCCCCcc--eEEEecCcHHHHHHHHHHh-CCCCCEEEEcCCCchhHHHHH---HHCCCEEEEEe
Confidence 444556666666543 55 7999999999999999998 577899999998888776554 44689999999
Q ss_pred cCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCC
Q 010538 160 VEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPF 239 (508)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~ 239 (508)
.+..+..+. +.+.++ . ..++++++|++++++|+||.++|++++.++++ +|
T Consensus 112 ~~~~~~~~~-------------~~~~~~--~------~~~~~~~~v~i~~~~~~tG~~~~~~~l~~l~~---------~~ 161 (350)
T cd00609 112 LDEEGGFLL-------------DLELLE--A------AKTPKTKLLYLNNPNNPTGAVLSEEELEELAE---------LA 161 (350)
T ss_pred cccccCCcc-------------CHHHHH--h------hcCccceEEEEECCCCCCCcccCHHHHHHHHH---------HH
Confidence 876555421 113444 2 23578899999999999999999888875433 33
Q ss_pred CCCCeEEEEeccccCCCC----C---CCCCCCCCcEEEEecccccc-CCCcceEEEEec-hhHhhhccccccCceEEecc
Q 010538 240 SKGRWMVLIDAAKGCVTQ----P---PDLSKYPVDFVVMSFYKIFG-YPTGLGALIMRN-DAAKLLKNTYFSGGTVAASI 310 (508)
Q Consensus 240 ~~~g~~vivD~a~~~g~~----~---~d~~~~~~D~~~~S~~K~~g-~P~G~G~l~~~~-~~~~~l~~~~~g~~~~~~~~ 310 (508)
+++|+++++|++++.+.. + ......++|+++.|+||+++ ++.++|++++++ ++.+.+...
T Consensus 162 ~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~~----------- 230 (350)
T cd00609 162 KKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKL----------- 230 (350)
T ss_pred HhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCCcccceEEEecCHHHHHHHHHHH-----------
Confidence 349999999999976332 1 22445578999999999887 222489999998 666555432
Q ss_pred cchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCC
Q 010538 311 ADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSE 390 (508)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~ 390 (508)
.....++++.....++..+++... .+++.+++++.++++++.+.|++.. ...+..+
T Consensus 231 -------------~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~------~~~~~~~---- 286 (350)
T cd00609 231 -------------LPYTTSGPSTLSQAAAAAALDDGE-EHLEELRERYRRRRDALLEALKELG------PLVVVKP---- 286 (350)
T ss_pred -------------HHhcccCCChHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHhcC------CccccCC----
Confidence 111234566777777777777543 3578899999999999999999873 2222112
Q ss_pred cccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCC
Q 010538 391 VSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGK 470 (508)
Q Consensus 391 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 470 (508)
..+.++++.+++. .+...+.++|.++||.++.+..+...
T Consensus 287 ----~~g~~~~~~~~~~----~~~~~~~~~l~~~gi~i~~~~~~~~~--------------------------------- 325 (350)
T cd00609 287 ----SGGFFLWLDLPEG----DDEEFLERLLLEAGVVVRPGSAFGEG--------------------------------- 325 (350)
T ss_pred ----CccEEEEEecCCC----ChHHHHHHHHHhCCEEEecccccccC---------------------------------
Confidence 2377888887654 12345788888999999887544321
Q ss_pred CCceEEEecCCCCCHHHHHHHHHhhhh
Q 010538 471 PTGAIRVSFGYMSTFEDAKVNRCSSFD 497 (508)
Q Consensus 471 ~~~~iRis~~~~~t~eev~~l~~~~~~ 497 (508)
.+.++|++++.+ .+|+++++++|++
T Consensus 326 ~~~~iRi~~~~~--~~~i~~~~~al~~ 350 (350)
T cd00609 326 GEGFVRLSFATP--EEELEEALERLAE 350 (350)
T ss_pred CCCeEEEEeeCC--HHHHHHHHHHhhC
Confidence 257899999987 9999999998763
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-24 Score=222.14 Aligned_cols=339 Identities=11% Similarity=0.016 Sum_probs=220.6
Q ss_pred CCCeeeeCCCCCCC-CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc----C--CCCCCceEEEcCC
Q 010538 39 NGTVYLDHAGATLY-SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF----N--ASMKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~--~~~~~~~i~~t~g 111 (508)
.+.+.|+.+....+ ++.+.+++.+..... ....|... .....+|+++|+++ | ++++. +|++|+|
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Y~~~----~G~~~lr~aia~~~~~~~g~~~~~~~-~I~it~G 100 (388)
T PRK07366 30 KELIDLSLGSSDLPAPAHALEAIAQSLHDP----STHGYLLF----HGTLDFREAAAQWYEQRFGLAVDPET-EVLPLIG 100 (388)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHhCc----ccCCCCCC----CCCHHHHHHHHHHHHHhhCCcCCCcC-eEEECCC
Confidence 56788887765544 555656654432111 01112211 11344566666665 4 55541 4999999
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCC
Q 010538 112 ATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGAS 191 (508)
Q Consensus 112 ~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~ 191 (508)
+++|+.+++.++ ..+|+.|++....|+.+... ++..|++++.+|++.++.. .+|+++++ +.
T Consensus 101 s~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~---~~~~g~~~~~v~~~~~~~~-------------~~d~~~l~--~~ 161 (388)
T PRK07366 101 SQEGTAHLPLAV-LNPGDFALLLDPGYPSHAGG---VYLAGGQIYPMPLRAENDF-------------LPVFADIP--TE 161 (388)
T ss_pred cHHHHHHHHHHh-CCCCCEEEEcCCCCcchHHH---HHhcCCEEEEEECCCccCC-------------CCCHHHHH--Hh
Confidence 999999999998 57899999888666666544 4456999999999754332 11566776 33
Q ss_pred CCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCC-CCCCCCC--
Q 010538 192 FPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQ-PPDLSKY-- 264 (508)
Q Consensus 192 l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~-~~d~~~~-- 264 (508)
+ .++++++++++++||||.+++.+++.++++ +|+++|++||+|+++.. +.. ...+...
T Consensus 162 ~------~~~~k~i~l~~p~NPTG~~~s~~~~~~l~~---------~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~ 226 (388)
T PRK07366 162 V------LAQARLMVLSYPHNPTTAIAPLSFFQEAVA---------FCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADP 226 (388)
T ss_pred h------cccceEEEEeCCCCCCCccCCHHHHHHHHH---------HHHHcCeEEEEecchhhcccCCCCCCCChhhCCC
Confidence 3 346799999999999999999998888776 56669999999999763 211 2222222
Q ss_pred --CCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHH
Q 010538 265 --PVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIR 340 (508)
Q Consensus 265 --~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~ 340 (508)
..-+++.|++|.|| .+| +||+++++++++.+...... ...++.+..... +.
T Consensus 227 ~~~~vi~~~SfSK~~g-~~GlRiG~~v~~~~li~~l~~~~~~-----------------------~~~~~~~~~~~~-a~ 281 (388)
T PRK07366 227 EKSVSIEFFTLSKSYN-MGGFRIGFAIGNAQLIQALRQVKAV-----------------------VDFNQYRGILNG-AI 281 (388)
T ss_pred CcccEEEEeecccccC-CcchhheehcCCHHHHHHHHHHHhh-----------------------cccCCCHHHHHH-HH
Confidence 12377899999998 447 89999999888766543110 011121212222 22
Q ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHH-
Q 010538 341 HGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEK- 419 (508)
Q Consensus 341 ~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~- 419 (508)
+++.. .+..+++.++++++.++++.+.|++. ++.+..|.+ +.++|+++++.-. .+..++..
T Consensus 282 ~~l~~-~~~~l~~~~~~~~~~r~~l~~~L~~~-------~~~~~~p~~--------g~f~~~~~~~~~~--~~~~~~~~~ 343 (388)
T PRK07366 282 AALTG-PQATVQQTVQIFRQRRDAFINALHQI-------GWPVPLPEA--------TMYVWAKLPEPWQ--GNSVEFCTQ 343 (388)
T ss_pred HHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHC-------CCcccCCCe--------eEEEEEECCcccC--CCHHHHHHH
Confidence 23321 12236778888899999999999876 455444433 7899999875211 01233554
Q ss_pred HHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 420 LASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 420 ~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
+++++||.+++|..|... ..+++|||++. +.++++..++.|+++
T Consensus 344 l~~~~gv~v~pg~~f~~~---------------------------------~~~~iRi~~~~--~~~~l~~~l~rl~~~ 387 (388)
T PRK07366 344 LVAQTGVAASPGSGFGKS---------------------------------GEGYVRFALVH--DPDILEEAVERIAAF 387 (388)
T ss_pred HHHhCCEEEeCchHhCcC---------------------------------CCCeEEEEecC--CHHHHHHHHHHHHHh
Confidence 457889999998755221 25789999984 689999999888765
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.3e-24 Score=220.26 Aligned_cols=308 Identities=11% Similarity=0.045 Sum_probs=201.0
Q ss_pred CCCeeeeCCCCCCC-CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc----C--CCCCCceEEEcCC
Q 010538 39 NGTVYLDHAGATLY-SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF----N--ASMKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~--~~~~~~~i~~t~g 111 (508)
++.+.|+.+....+ ++.+.+++.+.+... ....|... .....+|+++++++ + ++++. .|++|+|
T Consensus 35 ~~~i~l~~g~p~~~~p~~~~~~~~~~~~~~----~~~~Y~~~----~G~~~lr~aia~~~~~~~~~~~~~~~-~i~vt~G 105 (394)
T PRK05942 35 LDLIDLGMGNPDGAAPQPVIEAAIAALADP----QNHGYPPF----EGTASFRQAITDWYHRRYGVELDPDS-EALPLLG 105 (394)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHhCC----CCccCCCC----CCCHHHHHHHHHHHHHHHCCCcCCCC-eEEEccC
Confidence 45788887654433 444666655443211 01122211 11344556666655 5 34541 4889999
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCC
Q 010538 112 ATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGAS 191 (508)
Q Consensus 112 ~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~ 191 (508)
+++|+.+++.++ ..+|++|+++...|+.+..... ..|++++.+|++.+... ..|++.++ ++
T Consensus 106 ~~~al~~~~~~~-~~~gd~Vlv~~P~y~~~~~~~~---~~g~~~~~v~~~~~~~~-------------~~d~~~l~--~~ 166 (394)
T PRK05942 106 SKEGLTHLALAY-VNPGDVVLVPSPAYPAHFRGPL---IAGAQIYPIILKPENDW-------------LIDLSSIP--EE 166 (394)
T ss_pred hHHHHHHHHHHh-CCCCCEEEEcCCCCcchHHHHH---HcCCEEEEeecCCccCC-------------ccCHHHHH--Hh
Confidence 999999999998 7889999999988887665543 46999999998743221 11678887 44
Q ss_pred CCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCCCCC---CC-
Q 010538 192 FPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQPPDL---SK- 263 (508)
Q Consensus 192 l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d~---~~- 263 (508)
+ .++++++++++++||||.+++.+++.++++ +|+++|++||+|+++.. +..+.++ ..
T Consensus 167 ~------~~~~k~i~l~~P~NPtG~~~s~~~~~~i~~---------~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~ 231 (394)
T PRK05942 167 V------AQQAKILYFNYPSNPTTATAPREFFEEIVA---------FARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGA 231 (394)
T ss_pred c------cccceEEEEcCCCCCCCCcCCHHHHHHHHH---------HHHHcCeEEEEeccchhhccCCCCCCChhhCCCc
Confidence 4 467899999999999999999666666554 34459999999999763 2122222 11
Q ss_pred CCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHH
Q 010538 264 YPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRH 341 (508)
Q Consensus 264 ~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~ 341 (508)
.+..+++.|++|.|| .+| +||+++++++++.+...... ...+.+.....++..
T Consensus 232 ~~~~i~~~SfSK~~~-~~GlRiG~i~~~~~l~~~l~~~~~~------------------------~~~~~~~~~q~~~~~ 286 (394)
T PRK05942 232 KDIGVEFHTLSKTYN-MAGWRVGFVVGNRHIIQGLRTLKTN------------------------LDYGIFSALQKAAET 286 (394)
T ss_pred cccEEEEecchhccC-ChhhheeeeecCHHHHHHHHHHHhh------------------------cccCCCHHHHHHHHH
Confidence 134578899999998 457 89999999888776643110 011122233445555
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHH-HH
Q 010538 342 GFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVE-KL 420 (508)
Q Consensus 342 al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~-~~ 420 (508)
+++... ..++++++++.+.++++.+.|++. ++++..+.+ +.++|++++.. ++..++. +.
T Consensus 287 ~l~~~~-~~~~~~~~~~~~~~~~~~~~L~~~-------~~~~~~~~~--------~~f~~~~~~~~----~~~~~~~~~~ 346 (394)
T PRK05942 287 ALQLPD-SYLQQVQERYRTRRDFLIQGLGEL-------GWNIPPTKA--------TMYLWVPCPVG----MGSTDFALNV 346 (394)
T ss_pred HHhCcH-HHHHHHHHHHHHHHHHHHHHHHHC-------CCeecCCCe--------eeEEEEECCCC----CCHHHHHHHH
Confidence 665432 246788888999999999999875 566654432 55888888642 2222344 46
Q ss_pred HhhCCCeeccCCCC
Q 010538 421 ASLSGIQLRTGCFC 434 (508)
Q Consensus 421 L~~~gI~v~~g~~~ 434 (508)
|+++||.+.+|..|
T Consensus 347 l~~~gV~v~~g~~f 360 (394)
T PRK05942 347 LQKTGVVVTPGNAF 360 (394)
T ss_pred HHHCCEEEeCChhh
Confidence 77899999998644
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-24 Score=221.32 Aligned_cols=281 Identities=15% Similarity=0.049 Sum_probs=198.7
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCC-CeEEEecccccchHHHHHHHHhcCCeEEEEccCCcc
Q 010538 86 VRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQ-SSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAV 164 (508)
Q Consensus 86 ~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g-~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~ 164 (508)
..++|+++|+++|++++ +|++|+|+++++.+++.++. .+| ++|+++...|+ .+...++..|++++.+|++.+.
T Consensus 62 ~~~Lr~aia~~~~~~~~--~I~it~Gs~~~i~~~~~~~~-~~g~d~vlv~~P~y~---~y~~~~~~~g~~v~~v~~~~~~ 135 (354)
T PRK04635 62 PPELINAYSAYAGVAPE--QILTSRGADEAIELLIRAFC-EPGQDSIACFGPTYG---MYAISAETFNVGVKALPLTADY 135 (354)
T ss_pred HHHHHHHHHHHhCcCHH--HEEEeCCHHHHHHHHHHHhc-CCCCCeEEEcCCChH---HHHHHHHHcCCEEEEEecCCCC
Confidence 36678999999999998 99999999999999999984 556 88998775444 4445566689999999987544
Q ss_pred CccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCe
Q 010538 165 DNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRW 244 (508)
Q Consensus 165 ~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~ 244 (508)
.+ |++.++ . .++|++|++++++||||.++|.+++.++++. |+ ++
T Consensus 136 ~~---------------~~~~l~--------~--~~~~~li~i~nP~NPTG~~~~~~~l~~l~~~---------~~--~~ 179 (354)
T PRK04635 136 QL---------------PLDYIE--------Q--LDGAKLVFICNPNNPTGTVIDRADIEQLIEM---------TP--DA 179 (354)
T ss_pred CC---------------CHHHHH--------h--ccCCCEEEEeCCCCCCCccCCHHHHHHHHHh---------CC--Cc
Confidence 44 455555 1 1478999999999999999999999999984 32 59
Q ss_pred EEEEeccccCCCCCC---CCC-CCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhh
Q 010538 245 MVLIDAAKGCVTQPP---DLS-KYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKR 318 (508)
Q Consensus 245 ~vivD~a~~~g~~~~---d~~-~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~ 318 (508)
+||+|+++....... ++. ..+--+++.|+||+|| ++| +|++++++++++.+......+
T Consensus 180 ~vivDeay~~~~~~~s~~~~~~~~~~~iv~~S~SK~~~-l~GlRlG~~i~~~~~~~~l~~~~~~~--------------- 243 (354)
T PRK04635 180 IVVVDEAYIEFCPEYSVADLLASYPNLVVLRTLSKAFA-LAGARCGFTLANEELIEILMRVIAPY--------------- 243 (354)
T ss_pred EEEEeCchHhhccCcchHHHHhhCCCEEEEechHHHhh-hhHHHHhhhhCCHHHHHHHHhhcCCC---------------
Confidence 999999986432111 111 1122367889999998 667 799999998887665432111
Q ss_pred ccCccccccCCCCChhHHHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCC
Q 010538 319 RQGVEELFEDGTASFLSIASIRHGFNLINSLTV---PAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHD 395 (508)
Q Consensus 319 ~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~---~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~ 395 (508)
+.+.+.. .+++..+.+.+. .+..+++.+.++++.+.|+++ +++++..+.
T Consensus 244 -----------~~~~~~~---~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~------~~~~~~~~~-------- 295 (354)
T PRK04635 244 -----------PVPLPVS---EIATQALSEAGLARMKFQVLDLNAQGARLQAALSMY------GGAKVLEGN-------- 295 (354)
T ss_pred -----------CCCHHHH---HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhC------CCceECCCC--------
Confidence 1122222 223344433333 344456677778999999887 246665432
Q ss_pred CCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceE
Q 010538 396 TGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAI 475 (508)
Q Consensus 396 ~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i 475 (508)
++++++++++ . .++.+.|.++||.++.+. ... .++++
T Consensus 296 -g~f~~~~~~~--~-----~~~~~~l~~~gv~v~~~~---~~~--------------------------------~~~~l 332 (354)
T PRK04635 296 -GNYVLAKFDD--V-----DAVFKALWDAGIVARAYK---DPR--------------------------------LANCI 332 (354)
T ss_pred -CcEEEEECCC--H-----HHHHHHHHHCCEEEEECC---CCC--------------------------------CCCeE
Confidence 5788877753 1 347888999999997532 110 15789
Q ss_pred EEecCCCCCHHHHHHHHHhhhhh
Q 010538 476 RVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 476 Ris~~~~~t~eev~~l~~~~~~~ 498 (508)
|||++ +.+|++++++++++.
T Consensus 333 Ris~~---~~e~~~~l~~al~~~ 352 (354)
T PRK04635 333 RFSFS---NRAETDKLIGLIRNQ 352 (354)
T ss_pred EEEeC---CHHHHHHHHHHHHHh
Confidence 99986 899999999998754
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=218.94 Aligned_cols=341 Identities=14% Similarity=0.114 Sum_probs=218.8
Q ss_pred CCCeeeeCCCCCCCC-HHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc----CC--C-CCCceEEEcC
Q 010538 39 NGTVYLDHAGATLYS-ELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF----NA--S-MKDYKCIFTS 110 (508)
Q Consensus 39 ~~~iyld~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~--~-~~~~~i~~t~ 110 (508)
++.+.|..+.....+ +.+.+++.+ ..... ...|..... ..++|+.+++++ +. . ++ +|++|+
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~~~~~-~~~~~----~~~Y~~~~g----~~~lr~~ia~~~~~~~~~~~~~~~--~i~it~ 98 (391)
T PRK07309 30 PGILKLTLGEPDFTTPDHVKEAAKR-AIDAN----QSHYTGMAG----LLELRQAAADFVKEKYNLDYAPEN--EILVTI 98 (391)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHH-HHhcC----CCCCCCCCC----cHHHHHHHHHHHHHHhCCCCCCCC--cEEEeC
Confidence 567888876655443 434444433 32211 111211111 344555555554 43 2 34 799999
Q ss_pred ChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCcc-CccccccccccccccccchhhhhcC
Q 010538 111 GATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAV-DNDGLSESLVTSTKISLLPIQRRKG 189 (508)
Q Consensus 111 g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~-~~~~l~~~~~~~~~~~~d~~~l~~~ 189 (508)
|+++|+.+++.++ ..+|++|++....|+.+.. .++..|.+++.+|.+.++ .+ |++.++
T Consensus 99 G~~~al~~~~~~~-~~~gd~vl~~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~~~---------------d~~~l~-- 157 (391)
T PRK07309 99 GATEALSASLTAI-LEPGDKVLLPAPAYPGYEP---IVNLVGAEIVEIDTTENDFVL---------------TPEMLE-- 157 (391)
T ss_pred ChHHHHHHHHHHh-cCCCCEEEEeCCCCcchHH---HHHHcCCEEEEEecCCcCCcC---------------CHHHHH--
Confidence 9999999999998 6789999988877766544 444569999999876432 33 577887
Q ss_pred CCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCCCCCCCC-
Q 010538 190 ASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQPPDLSKY- 264 (508)
Q Consensus 190 ~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d~~~~- 264 (508)
+++++ ..++++++++++++||||.+++.+++.++++ +|+++|+++|+|++++. +....++...
T Consensus 158 ~~~~~---~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~---------~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~ 225 (391)
T PRK07309 158 KAILE---QGDKLKAVILNYPANPTGVTYSREQIKALAD---------VLKKYDIFVISDEVYSELTYTGEPHVSIAEYL 225 (391)
T ss_pred HHhhc---cCCCeEEEEEECCCCCCCcCcCHHHHHHHHH---------HHHHcCcEEEEEccccceeeCCCCCCCHHHhc
Confidence 66532 1346899999999999999999776666665 45559999999999864 2222333222
Q ss_pred -CCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHH
Q 010538 265 -PVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRH 341 (508)
Q Consensus 265 -~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~ 341 (508)
+..+++.|++|.|| .+| +||+++++++++.+.... . +...+++.....++..
T Consensus 226 ~~~~i~~~S~SK~~g-~~GlRvG~~v~~~~~~~~~~~~~-~-----------------------~~~~~~~~~~q~~~~~ 280 (391)
T PRK07309 226 PDQTILINGLSKSHA-MTGWRIGLIFAPAEFTAQLIKSH-Q-----------------------YLVTAATTMAQFAAVE 280 (391)
T ss_pred cCCEEEEecChhhcc-CccceeEEEEeCHHHHHHHHHHH-h-----------------------hcccCCChHHHHHHHH
Confidence 23488999999998 447 899999998877655321 0 1111233333444443
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHH-H
Q 010538 342 GFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEK-L 420 (508)
Q Consensus 342 al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~-~ 420 (508)
+++.... .....++++.+.++++.+.|++. ++.+..|.+ +.++|++++.... .+..++.+ +
T Consensus 281 ~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~p~g--------g~~~~~~l~~~~~--~~~~~~~~~l 342 (391)
T PRK07309 281 ALTNGKD-DALPMKKEYIKRRDYIIEKMTDL-------GFKIIKPDG--------AFYIFAKIPAGYN--QDSFKFLQDF 342 (391)
T ss_pred HHhCChh-HHHHHHHHHHHHHHHHHHHHHHC-------CCeecCCCe--------eEEEEEECCCCCC--CCHHHHHHHH
Confidence 4332111 12445677788888999999875 566665543 5677878764211 12234554 4
Q ss_pred HhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 421 ASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 421 L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
++++||.+.+|..+... .++++|++++. +.++++..++.|+++++
T Consensus 343 ~~~~gv~v~pg~~f~~~---------------------------------~~~~iRi~~~~--~~~~l~~~i~~l~~~~~ 387 (391)
T PRK07309 343 ARKKAVAFIPGAAFGPY---------------------------------GEGYVRLSYAA--SMETIKEAMKRLKEYME 387 (391)
T ss_pred HHhCCEEEeCchhhCCC---------------------------------CCCEEEEEecC--CHHHHHHHHHHHHHHHH
Confidence 67789999998654221 25799999984 67899999988887764
Q ss_pred h
Q 010538 501 F 501 (508)
Q Consensus 501 ~ 501 (508)
-
T Consensus 388 ~ 388 (391)
T PRK07309 388 E 388 (391)
T ss_pred h
Confidence 3
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-23 Score=215.57 Aligned_cols=334 Identities=16% Similarity=0.113 Sum_probs=225.9
Q ss_pred chHHHHHHhhccCCCCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCC
Q 010538 25 SIDQIRATEFKRLENGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKD 103 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~ 103 (508)
.+..++. +|.. ++++.|+.+.... +++.+.+++.+ ...... .|... .. ..+|+.+|++++++++
T Consensus 25 ~~~~~~~-~~~~--~~~i~l~~~~~~~~~~~~~~~al~~-~~~~~~-----~Y~~~----~g-~~lr~~ia~~~~~~~~- 89 (371)
T PRK05166 25 TIEEVRA-RYGV--PRIAKLGSNENPLGPSPAVRRAFAD-IAELLR-----LYPDP----QG-RALREAIAARTGVPAD- 89 (371)
T ss_pred CHHHHHH-hcCC--cceEEcCCCCCCCCCCHHHHHHHHH-HHHHhh-----cCCCC----cH-HHHHHHHHHHhCcCHH-
Confidence 4556666 7763 5789998775443 45555555433 222111 12111 11 2688999999999888
Q ss_pred ceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccch
Q 010538 104 YKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLP 183 (508)
Q Consensus 104 ~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~ 183 (508)
+|++|+|+++++.+++.++ .++|+.|++....|+. ....++..|++++.+|.+.+..+ |+
T Consensus 90 -~i~~t~G~~~~l~~~~~~~-~~~gd~vli~~P~y~~---~~~~~~~~g~~~~~v~~~~~~~~---------------~~ 149 (371)
T PRK05166 90 -RIILGNGSEDLIAVICRAV-LRPGDRVVTLYPSFPL---HEDYPTMMGARVERVTVTPDLGF---------------DL 149 (371)
T ss_pred -HEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChHH---HHHHHHHcCCeEEEeecCCCCCC---------------CH
Confidence 8999999999999999998 6889999987655544 44555667999999998755445 57
Q ss_pred hhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC---CCCC
Q 010538 184 IQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT---QPPD 260 (508)
Q Consensus 184 ~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~---~~~d 260 (508)
++++ +++ .+++++|++++++||||.++|.+++.++++ +|+ .+++|++|+++..-. ...+
T Consensus 150 ~~l~--~~~------~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~---------~~~-~~~~ii~De~y~~~~~~~~~~~ 211 (371)
T PRK05166 150 DALC--AAV------ARAPRMLMFSNPSNPVGSWLTADQLARVLD---------ATP-PETLIVVDEAYAEYAAGDDYPS 211 (371)
T ss_pred HHHH--Hhh------hcCCCEEEEeCCCCCCCCCCCHHHHHHHHH---------hCC-CCcEEEEECcHHHhcCCcCccc
Confidence 8888 544 456799999999999999999999999998 354 488999999976321 1111
Q ss_pred ----CCCC-CCcEEEEeccccccCCCc--ceEEEEe-chhHhhhccccccCceEEecccchhhhhhccCccccccCCCCC
Q 010538 261 ----LSKY-PVDFVVMSFYKIFGYPTG--LGALIMR-NDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTAS 332 (508)
Q Consensus 261 ----~~~~-~~D~~~~S~~K~~g~P~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~ 332 (508)
+... +..+++.|++|.|| .+| +||+++. +++++.+..... ....+
T Consensus 212 ~~~~~~~~~~~vi~i~SfSK~~~-l~GlRiG~~i~~~~~l~~~~~~~~~--------------------------~~~~~ 264 (371)
T PRK05166 212 ALTLLKARGLPWIVLRTFSKAYG-LAGLRVGYGLVSDPELVGLLDRVRT--------------------------PFNVN 264 (371)
T ss_pred HHHHHhhcCCCEEEEeechHhhh-cchhheeeeecCCHHHHHHHHHhcc--------------------------CCCCC
Confidence 1111 12478999999998 557 8998874 556554432210 01123
Q ss_pred hhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCcc
Q 010538 333 FLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWF 412 (508)
Q Consensus 333 ~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 412 (508)
.....++.+++.. ...+++..+.+++.++++.+.|++. ++.+. ++. +++++++++.
T Consensus 265 ~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~-------g~~~~-p~~--------g~fl~~~~~~------ 320 (371)
T PRK05166 265 GAAQAAALAALDD--EEHLAKGVALALAERERLKKELAEM-------GYRIA-PSR--------ANFLFFDARR------ 320 (371)
T ss_pred HHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHC-------cCeeC-CCc--------CCEEEEeCCC------
Confidence 3333333333331 1225666777888889999999876 45543 322 6788887642
Q ss_pred CHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHH
Q 010538 413 GYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNR 492 (508)
Q Consensus 413 ~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~ 492 (508)
+..++.+.|.++||.+++|... + ..+++|||++ +.++.+++.
T Consensus 321 ~~~~l~~~l~~~gi~v~p~~~~--~---------------------------------~~~~iRi~~~---~~~~~~~l~ 362 (371)
T PRK05166 321 PASAVAEALLRQGVIVKPWKQP--G---------------------------------FETFIRVSIG---SPEENDHFV 362 (371)
T ss_pred CHHHHHHHHHHCCeEEecCCCC--C---------------------------------CCCeEEEEcC---CHHHHHHHH
Confidence 1235788888899999987521 1 1578999999 788899999
Q ss_pred Hhhhhhhh
Q 010538 493 CSSFDFVN 500 (508)
Q Consensus 493 ~~~~~~~~ 500 (508)
+.++.+++
T Consensus 363 ~~l~~i~~ 370 (371)
T PRK05166 363 AALDKVLE 370 (371)
T ss_pred HHHHHHhh
Confidence 99887653
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=220.20 Aligned_cols=345 Identities=11% Similarity=0.036 Sum_probs=225.3
Q ss_pred CCCeeeeCCCCCCC-CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCC--CCCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGATLY-SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA--SMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~--~~~~~~i~~t~g~t~a 115 (508)
.+.+.|..+..... ++.+.+++.+ .+.. ....|.......++.+++.+.+.+..|. +++. +|++|+|+++|
T Consensus 54 ~~~i~l~~G~P~~~~~~~~~~~~~~-~~~~----~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~-~I~vt~G~~~a 127 (413)
T PLN00175 54 HGAINLGQGFPNFDGPDFVKEAAIQ-AIRD----GKNQYARGFGVPELNSAIAERFKKDTGLVVDPEK-EVTVTSGCTEA 127 (413)
T ss_pred CCeEecCCCCCCCCCCHHHHHHHHH-HHhc----CCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-CEEEeCCHHHH
Confidence 46788887765544 4445555433 3322 1122322222334444444444444453 4531 59999999999
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc-cCccccccccccccccccchhhhhcCCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA-VDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~-~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
+.+++.++ ..+|++|++....|+.+.. .++..|++++.++++.+ ..+ |++.++ +.+
T Consensus 128 l~~~~~~l-~~~gd~Vlv~~P~y~~~~~---~~~~~g~~~~~v~~~~~~~~~---------------~~~~l~--~~~-- 184 (413)
T PLN00175 128 IAATILGL-INPGDEVILFAPFYDSYEA---TLSMAGAKIKTVTLRPPDFAV---------------PEDELK--AAF-- 184 (413)
T ss_pred HHHHHHHh-CCCCCEEEEeCCCchhHHH---HHHHcCCEEEEEECCcccCCC---------------CHHHHH--Hhc--
Confidence 99999988 6889999998866665544 44557999999998643 233 678888 554
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC---CCCCCCC----CCCc
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT---QPPDLSK----YPVD 267 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~---~~~d~~~----~~~D 267 (508)
.+++++|++++++||||.+++.+++.++++ +|++++++||+|+++.... .+..+.. .+..
T Consensus 185 ----~~~~k~i~i~~p~NPtG~~~s~~~l~~l~~---------~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~v 251 (413)
T PLN00175 185 ----TSKTRAILINTPHNPTGKMFTREELELIAS---------LCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERT 251 (413)
T ss_pred ----CcCceEEEecCCCCCCCcCCCHHHHHHHHH---------HHHHcCcEEEEecccCccccCCcccChhhCCCCcCcE
Confidence 457899999999999999999777666665 4555999999999986422 1222221 1345
Q ss_pred EEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHH
Q 010538 268 FVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNL 345 (508)
Q Consensus 268 ~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~ 345 (508)
+++.|++|.|+ .+| +||+++++++++.+..... ....+.+.+...++..+++.
T Consensus 252 i~i~SfSK~~~-~~G~RiG~~v~~~~l~~~l~~~~~------------------------~~~~~~s~~~Q~a~~~~l~~ 306 (413)
T PLN00175 252 VTMNSLGKTFS-LTGWKIGWAIAPPHLTWGVRQAHS------------------------FLTFATATPMQWAAVAALRA 306 (413)
T ss_pred EEEecchhhcc-CcchheeeeEeCHHHHHHHHHHHh------------------------hccCCCCHHHHHHHHHHHhC
Confidence 88899999998 447 8999999988776543310 01122333344444445542
Q ss_pred HHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHH-hhC
Q 010538 346 INSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLA-SLS 424 (508)
Q Consensus 346 ~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L-~~~ 424 (508)
- +..++..++++.+.++++.+.|++. ++.+..|.+ +.++++++...+. .+..++.+.| +++
T Consensus 307 ~-~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~p~g--------~~f~~~~~~~~~~--~~~~~~~~~ll~~~ 368 (413)
T PLN00175 307 P-ESYYEELKRDYSAKKDILVEGLKEV-------GFKVYPSSG--------TYFVMVDHTPFGF--ENDIAFCEYLIEEV 368 (413)
T ss_pred C-HHHHHHHHHHHHHHHHHHHHHHHHC-------CCeecCCCe--------eEEEEEeccccCC--CCHHHHHHHHHHhC
Confidence 1 1236778888999999999999886 577665543 6678888742110 0223455555 578
Q ss_pred CCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 425 GIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 425 gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
||.+.+|..|.... ....+++|||++. +.++++..++.|+++++
T Consensus 369 gV~v~pg~~F~~~~------------------------------~~~~~~iRls~~~--~~e~l~~~~~rL~~~~~ 412 (413)
T PLN00175 369 GVAAIPPSVFYLNP------------------------------EDGKNLVRFAFCK--DEETLRAAVERMKTKLK 412 (413)
T ss_pred CEEEeCchHhCCCC------------------------------CCCCCEEEEEEcC--CHHHHHHHHHHHHHHHh
Confidence 99999987553210 0125689999984 79999999999887654
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=219.64 Aligned_cols=340 Identities=11% Similarity=0.054 Sum_probs=220.6
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc-----CCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF-----NASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~-----~~~~~~~~i~~t~g~ 112 (508)
.+.++|+.+.... +++.+.+++ ........ .|.. .....++|+.+++++ +++++ +|++|+|+
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~a~-~~~~~~~~-----~Y~~----~~g~~~lr~~ia~~~~~~~~~~~~~--~i~~t~G~ 97 (397)
T PRK07568 30 IKVYHLNIGQPDIKTPEVFFEAI-KNYDEEVL-----AYSH----SQGIPELREAFAKYYKKWGIDVEPD--EILITNGG 97 (397)
T ss_pred CCEEEecCCCCCCCCCHHHHHHH-HHHhcCCc-----CcCC----CCCCHHHHHHHHHHHHHhCCCCCcc--eEEEcCCh
Confidence 4689999988764 455555554 33322111 1211 122456777787776 46777 89999999
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCC
Q 010538 113 TAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASF 192 (508)
Q Consensus 113 t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l 192 (508)
++|+.+++.++ .++|++|+++...|+.+..+ ++..|++++.++.+.+..+.. ++++.++ +++
T Consensus 98 ~~al~~~~~~l-~~~gd~Vl~~~p~y~~~~~~---~~~~g~~~~~v~~~~~~g~~~------------~~~~~l~--~~~ 159 (397)
T PRK07568 98 SEAILFAMMAI-CDPGDEILVPEPFYANYNGF---ATSAGVKIVPVTTKIEEGFHL------------PSKEEIE--KLI 159 (397)
T ss_pred HHHHHHHHHHh-cCCCCEEEEecCCCccHHHH---HHHcCCEEEEeecCcccCCCC------------CCHHHHH--Hhc
Confidence 99999999988 68899999988766655443 445699999999863222210 1357777 444
Q ss_pred CCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCCCCCCC----C
Q 010538 193 PERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQPPDLSK----Y 264 (508)
Q Consensus 193 ~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d~~~----~ 264 (508)
++++++|++++++||||.+++.+++.++++ +|+++|+++++|+++.. +..+.++.. .
T Consensus 160 ------~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~---------~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~ 224 (397)
T PRK07568 160 ------TPKTKAILISNPGNPTGVVYTKEELEMLAE---------IAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLE 224 (397)
T ss_pred ------CccceEEEEECCCCCCCccCCHHHHHHHHH---------HHHHCCcEEEEeccchhcccCCCCccChhhcCCCc
Confidence 457899999999999999998665555554 34449999999999863 211122221 1
Q ss_pred CCcEEEEeccccccCCCc--ceEEEEe-chhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHH
Q 010538 265 PVDFVVMSFYKIFGYPTG--LGALIMR-NDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRH 341 (508)
Q Consensus 265 ~~D~~~~S~~K~~g~P~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~ 341 (508)
+.-+++.|++|.|| ++| +|+++++ ++.++.+..... ...+.+.....++..
T Consensus 225 ~~~i~~~S~SK~~~-~~G~R~G~~~~~~~~~~~~~~~~~~-------------------------~~~~~s~~~q~~~~~ 278 (397)
T PRK07568 225 DRVIIIDSVSKRYS-ACGARIGCLISKNKELIAAAMKLCQ-------------------------ARLSPPTLEQIGAAA 278 (397)
T ss_pred CCEEEEecchhhcc-CCCcceEEEecCCHHHHHHHHHHhh-------------------------ccCCCCcHHHHHHHH
Confidence 23478889999998 546 8999885 456544332200 001223334444444
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHH
Q 010538 342 GFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLA 421 (508)
Q Consensus 342 al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L 421 (508)
+++.. +..++++.+++++.++++.+.|++. +++.+..|.+ +.+++++++..+ ..++.+.|
T Consensus 279 ~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~------~~~~~~~p~g--------~~~~~~~l~~~~-----~~~~~~~l 338 (397)
T PRK07568 279 LLDTP-ESYFDEVREEYKKRRDILYEELNKI------PGVVCEKPKG--------AFYIIAKLPVDD-----AEDFAKWL 338 (397)
T ss_pred HhhCC-HHHHHHHHHHHHHHHHHHHHHHhcC------CCceecCCCc--------ceEEEEecCCCC-----HHHHHHHH
Confidence 55421 2235677788889999999999876 3566554432 567888886432 23466666
Q ss_pred hh------CCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhh
Q 010538 422 SL------SGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSS 495 (508)
Q Consensus 422 ~~------~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~ 495 (508)
.+ +||.+.+|..|.... +...+++|+|++. +.++++..++.|
T Consensus 339 ~~~~~~~~~gv~v~pg~~f~~~~------------------------------~~~~~~iRls~~~--~~~~~~~~~~~l 386 (397)
T PRK07568 339 LTDFNYNGETVMVAPASGFYATP------------------------------GLGKNEIRIAYVL--NEEDLKRAMEIL 386 (397)
T ss_pred HhhcccccceEEEeCchHhcCCC------------------------------CCCCCeEEEEEeC--CHHHHHHHHHHH
Confidence 43 699999987542210 1124789999983 679999999999
Q ss_pred hhhhhh
Q 010538 496 FDFVNF 501 (508)
Q Consensus 496 ~~~~~~ 501 (508)
.++++-
T Consensus 387 ~~~l~~ 392 (397)
T PRK07568 387 KEALEK 392 (397)
T ss_pred HHHHHH
Confidence 887754
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=217.89 Aligned_cols=338 Identities=14% Similarity=0.095 Sum_probs=221.3
Q ss_pred CCCeeeeCCCCCCC-CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc----CC--CCCCceEEEcCC
Q 010538 39 NGTVYLDHAGATLY-SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF----NA--SMKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~--~~~~~~i~~t~g 111 (508)
++.+.|+.+-.... ++.+.+++.+.. .. ....|..... ...+|+.+|+++ |. ++++ +|++|+|
T Consensus 20 ~~~i~l~~~~~~~~~~~~~~~~~~~~~-~~----~~~~Y~~~~g----~~~lr~~ia~~~~~~~g~~~~~~~-~i~~t~G 89 (378)
T PRK07682 20 EGVISLGVGEPDFVTPWNVREASIRSL-EQ----GYTSYTANAG----LLELRQEIAKYLKKRFAVSYDPND-EIIVTVG 89 (378)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHH-hc----CCCCCCCCCC----cHHHHHHHHHHHHHHhCCCCCCCC-cEEEeCC
Confidence 46788887765443 333445543332 21 1111211111 344555555555 43 4431 6999999
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc--cCccccccccccccccccchhhhhcC
Q 010538 112 ATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA--VDNDGLSESLVTSTKISLLPIQRRKG 189 (508)
Q Consensus 112 ~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~--~~~~~l~~~~~~~~~~~~d~~~l~~~ 189 (508)
+++|+.+++.++ .++|+.|++....|+.+.... +..|.++..++.+.+ ..+ |++.++
T Consensus 90 ~~~al~~~~~~l-~~~gd~vl~~~p~y~~~~~~~---~~~g~~~~~~~~~~~~~~~~---------------d~~~l~-- 148 (378)
T PRK07682 90 ASQALDVAMRAI-INPGDEVLIVEPSFVSYAPLV---TLAGGVPVPVATTLENEFKV---------------QPAQIE-- 148 (378)
T ss_pred hHHHHHHHHHHh-CCCCCEEEEeCCCchhhHHHH---HHcCCEEEEeecCCccCCCC---------------CHHHHH--
Confidence 999999999998 688999999987777655444 445889988887532 233 678888
Q ss_pred CCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC---CCC---CCC
Q 010538 190 ASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ---PPD---LSK 263 (508)
Q Consensus 190 ~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~---~~d---~~~ 263 (508)
+++ .++++++++++++||||.+++.+++.++++ +|+++++++|+|++++.... +.. +..
T Consensus 149 ~~~------~~~~~~v~~~~p~NPtG~~~s~~~~~~l~~---------~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 213 (378)
T PRK07682 149 AAI------TAKTKAILLCSPNNPTGAVLNKSELEEIAV---------IVEKHDLIVLSDEIYAELTYDEAYTSFASIKG 213 (378)
T ss_pred hhc------CcccEEEEEECCCCCcCcCcCHHHHHHHHH---------HHHHcCcEEEEehhhhhcccCCCCCChhhccc
Confidence 555 356899999999999999999776666655 45559999999999874321 111 111
Q ss_pred -CCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHH
Q 010538 264 -YPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIR 340 (508)
Q Consensus 264 -~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~ 340 (508)
.+..+++.|++|.|+ .+| +||+++++++++.+..... +...+.+.....++.
T Consensus 214 ~~~~~i~~~S~SK~~~-~~GlR~G~~~~~~~~i~~l~~~~~------------------------~~~~~~~~~~q~a~~ 268 (378)
T PRK07682 214 MRERTILISGFSKGFA-MTGWRLGFIAAPVYFSEAMLKIHQ------------------------YSMMCAPTMAQFAAL 268 (378)
T ss_pred ccCCEEEEecCccccc-ChhhhhhhhhcCHHHHHHHHHHHH------------------------hhccCCCHHHHHHHH
Confidence 134688999999998 557 8999999998877654310 011122333333333
Q ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHH
Q 010538 341 HGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKL 420 (508)
Q Consensus 341 ~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 420 (508)
.+++... ..++++++++++.++++.+.|+++ ++++..|.+ +.++|..++... .+..++.+.
T Consensus 269 ~~l~~~~-~~~~~~~~~~~~~~~~~~~~L~~~-------~~~~~~p~g--------~~~~~~~~~~~~---~~~~~~~~~ 329 (378)
T PRK07682 269 EALRAGN-DDVIRMRDSYRKRRNFFVTSFNEI-------GLTCHVPGG--------AFYAFPSISSTG---LSSEEFAEQ 329 (378)
T ss_pred HHHhCCh-HHHHHHHHHHHHHHHHHHHHHHHC-------CCccCCCCe--------eEEEEEeccCCC---CCHHHHHHH
Confidence 3443211 226777888899999999999886 566554433 566766664211 233456666
Q ss_pred H-hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 421 A-SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 421 L-~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
| +++||.+++|..|... .++++|||++. +.++++..++.|++++
T Consensus 330 ll~~~gv~v~pg~~f~~~---------------------------------~~~~iRis~~~--~~~~l~~~l~~l~~~l 374 (378)
T PRK07682 330 LLLEEKVAVVPGSVFGES---------------------------------GEGFIRCSYAT--SLEQLQEAMKRMKRFV 374 (378)
T ss_pred HHHhCCEEEcCchhhCcC---------------------------------CCCeEEEEeCC--CHHHHHHHHHHHHHHH
Confidence 5 5789999998765321 25789999985 6899999999988876
Q ss_pred hh
Q 010538 500 NF 501 (508)
Q Consensus 500 ~~ 501 (508)
+-
T Consensus 375 ~~ 376 (378)
T PRK07682 375 EN 376 (378)
T ss_pred hh
Confidence 53
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=218.01 Aligned_cols=337 Identities=14% Similarity=0.077 Sum_probs=218.8
Q ss_pred CCCeeeeCCCCCCC-CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc------CCCCCCceEEEcCC
Q 010538 39 NGTVYLDHAGATLY-SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF------NASMKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~------~~~~~~~~i~~t~g 111 (508)
++.+-|..+....+ ++.+++++.+..... ...|..... ...+|+.+++++ +++++ +|++|+|
T Consensus 29 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~-----~~~Y~~~~G----~~~lr~~ia~~~~~~~~~~~~~~--~i~it~G 97 (384)
T PRK06348 29 PDIIDLSLGDPDLITDESIINAAFEDAKKG-----HTRYTDSGG----DVELIEEIIKYYSKNYDLSFKRN--EIMATVG 97 (384)
T ss_pred CCcEEcCCCCCCCCCCHHHHHHHHHHHhcC-----CCCCCCCCC----cHHHHHHHHHHHHHHhCCCCChh--hEEEcCC
Confidence 45677776654433 445555554433211 111221111 234555666555 45777 8999999
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCC
Q 010538 112 ATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGAS 191 (508)
Q Consensus 112 ~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~ 191 (508)
+++|+.+++.++ ..+|+.|+++...|+.+... ++..|.+++.+|..++... ..|++.++ ++
T Consensus 98 ~~~al~~~~~~~-~~~gd~vlv~~p~y~~~~~~---~~~~g~~~~~~~~~~~~~~-------------~~d~~~l~--~~ 158 (384)
T PRK06348 98 ACHGMYLALQSI-LDPGDEVIIHEPYFTPYKDQ---IEMVGGKPIILETYEEDGF-------------QINVKKLE--AL 158 (384)
T ss_pred hHHHHHHHHHHh-cCCCCEEEEeCCCCcchHHH---HHHcCCEEEEecCCcCcCC-------------cCCHHHHH--Hh
Confidence 999999999998 68899999888666655544 4445889988887432221 11678888 55
Q ss_pred CCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCC---CCCCCCCC----C
Q 010538 192 FPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCV---TQPPDLSK----Y 264 (508)
Q Consensus 192 l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g---~~~~d~~~----~ 264 (508)
+ .+++++|++++++||||.+++.+++.++++ +|+++|++||+|+++..- .....+.. .
T Consensus 159 ~------~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~---------~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~ 223 (384)
T PRK06348 159 I------TSKTKAIILNSPNNPTGAVFSKETLEEIAK---------IAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMP 223 (384)
T ss_pred h------CcCccEEEEeCCCCCCCcCCCHHHHHHHHH---------HHHHCCeEEEEecccccceeCCCccchhhcCCCc
Confidence 4 356789999999999999999877777765 455699999999998632 11122221 1
Q ss_pred CCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHH
Q 010538 265 PVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHG 342 (508)
Q Consensus 265 ~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~a 342 (508)
+..+++.|++|.+|.| | +||+++++++++.+...... ...+.+.....++..+
T Consensus 224 ~~vi~~~SfSK~~~l~-GlRiG~~v~~~~~~~~~~~~~~~------------------------~~~~~~~~~q~~~~~~ 278 (384)
T PRK06348 224 ERTITFGSFSKDFAMT-GWRIGYVIAPDYIIETAKIINEG------------------------ICFSAPTISQRAAIYA 278 (384)
T ss_pred CcEEEEecchhccCCc-cccceeeecCHHHHHHHHHHHHh------------------------ccCCCCHHHHHHHHHH
Confidence 3458889999999834 6 89999998887665433110 1112233334444445
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHH-
Q 010538 343 FNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLA- 421 (508)
Q Consensus 343 l~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L- 421 (508)
++..++ .++.+++.+++.++++.+.|+++ +++.+..+.+ +.++|++++... ++..++.+.+
T Consensus 279 l~~~~~-~~~~~~~~~~~r~~~~~~~L~~~------~~~~~~~p~g--------g~~~~~~~~~~~---~~~~~l~~~l~ 340 (384)
T PRK06348 279 LKHRDT-IVPLIKEEFQKRLEYAYKRIESI------PNLSLHPPKG--------SIYAFINIKKTG---LSSVEFCEKLL 340 (384)
T ss_pred HhCcHH-HHHHHHHHHHHHHHHHHHHHhcC------CCceeccCCe--------eEEEEEecccCC---CCHHHHHHHHH
Confidence 443221 24667777888888899999876 3566655443 567888886321 2233466655
Q ss_pred hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 422 SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 422 ~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
+++||.+.+|..|... ..+++|||++ .+.++++..++.|+++
T Consensus 341 ~~~gv~v~pg~~f~~~---------------------------------~~~~iRi~~~--~~~~~l~~al~~l~~~ 382 (384)
T PRK06348 341 KEAHVLVIPGKAFGES---------------------------------GEGYIRLACT--VGIEVLEEAFNRIEKM 382 (384)
T ss_pred HhCCEEEcCchhhccC---------------------------------CCCeEEEEec--CCHHHHHHHHHHHHhh
Confidence 5789999998765321 2578999997 4788999988887654
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.2e-24 Score=226.46 Aligned_cols=362 Identities=12% Similarity=0.032 Sum_probs=226.1
Q ss_pred HHHHHHhhccCC-CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC------C
Q 010538 27 DQIRATEFKRLE-NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN------A 99 (508)
Q Consensus 27 ~~~r~~~f~~~~-~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------~ 99 (508)
..+|+ -+..+. ++.|. |+++++..|..+++++.+ .+...... ...|... .....+|+.+|++++ +
T Consensus 65 ~~~~~-~~~~~~~p~~i~-~~~~~~~~P~~~~~~~~~-~~~~~~~~-~~~Y~~~----~G~~~LR~aia~~~~~~~g~~~ 136 (481)
T PTZ00377 65 TFYRQ-VLSLVEYPFLLE-DPSVSSLFPADVVARAKE-YLNAIGGG-TGAYTDS----AGYPFVRKAVAAFIERRDGVPK 136 (481)
T ss_pred hHHHH-HHHHccChhhhc-CccccccCCHHHHHHHHH-HHHhCCCc-ccCcCcc----cCCHHHHHHHHHHHHHhcCCCC
Confidence 34554 443332 23444 444666678888877643 33321111 1123222 234556666666654 5
Q ss_pred CCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCcccccccccccccc
Q 010538 100 SMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKI 179 (508)
Q Consensus 100 ~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~ 179 (508)
+++ +|++|+|+++|+.+++.++...+|+.|+++...|+++.... +..|.+++.+|++.+..+
T Consensus 137 ~~~--~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~~y~~~~---~~~g~~~v~v~~~~~~~~------------- 198 (481)
T PTZ00377 137 DPS--DIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYSAAI---TLLGGKQVPYYLDEEKGW------------- 198 (481)
T ss_pred Chh--hEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCchhHHHHH---HHcCCEEEEEEeccccCC-------------
Confidence 677 89999999999999999983368999999987777665444 446999999998753222
Q ss_pred ccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----C
Q 010538 180 SLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----V 255 (508)
Q Consensus 180 ~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g 255 (508)
.+|+++++ +++.+.....++++++++++++||||.+++.+++.++++ +|+++|++||+|+++.. +
T Consensus 199 ~~d~~~l~--~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~---------~a~~~~~~iI~De~Y~~l~~~~ 267 (481)
T PTZ00377 199 SLDQEELE--EAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIK---------FCYEKGIVLMADEVYQENIYDG 267 (481)
T ss_pred CCCHHHHH--HHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHH---------HHHHCCCEEEEehhhHhhccCC
Confidence 11577887 554211011237899989999999999999776666665 45559999999999863 1
Q ss_pred C-CCCCCC----CCC-------CcEEEEecccc-ccCCCc--ceEEEE---echhHhhhccccccCceEEecccchhhhh
Q 010538 256 T-QPPDLS----KYP-------VDFVVMSFYKI-FGYPTG--LGALIM---RNDAAKLLKNTYFSGGTVAASIADIDFVK 317 (508)
Q Consensus 256 ~-~~~d~~----~~~-------~D~~~~S~~K~-~g~P~G--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~ 317 (508)
. ...++. .+. .-+++.|++|. ++ .+| +||+++ ++++++.+.....
T Consensus 268 ~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~-~~GlRiG~~~~~~~p~~li~~l~~~~~---------------- 330 (481)
T PTZ00377 268 EKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIG-ECGRRGGYFELTNIPPEVREQIYKLAS---------------- 330 (481)
T ss_pred CCCcccHHHHHHhhcccccCCeEEEEEecCCccccc-CCcCceEEEEEeCCCHHHHHHHHHHhh----------------
Confidence 1 111211 111 12677899996 56 567 899987 6777666554310
Q ss_pred hccCccccccCCCCChhHHHHHHHHHHH----------HHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCC
Q 010538 318 RRQGVEELFEDGTASFLSIASIRHGFNL----------INSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTY 387 (508)
Q Consensus 318 ~~~~~~~~~~~gt~~~~~~~~l~~al~~----------~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~ 387 (508)
...+ ++.....++..+++. +.+ .+..+++++++.++.+.+.|+++ +++++..|.
T Consensus 331 --------~~~~-~~~~~Q~a~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~rr~~l~~~L~~~------~g~~~~~p~ 394 (481)
T PTZ00377 331 --------INLC-SNVVGQLMTGLMCNPPREGDASYPLYKR-ERDAIFTSLKRRAELLTDELNKI------EGVSCQPVE 394 (481)
T ss_pred --------eecC-CChHHHHHHHHHhCCCCCCcccHHHHHH-HHHHHHHHHHHHHHHHHHHHhcC------CCcEeecCC
Confidence 0112 334444445545531 111 13444455678888899999887 368877665
Q ss_pred CCCcccCCCCceEEEEeeCCCC-------Ccc--CHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCC
Q 010538 388 TSEVSYHDTGSMVSFNLKRPDG-------SWF--GYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGH 458 (508)
Q Consensus 388 ~~~~~~~~~~~~v~~~~~~~~~-------~~~--~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~ 458 (508)
+ +.++|+++.-.+. ..+ +...+.+.|+++||.+.+|..|....
T Consensus 395 g--------g~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~-------------------- 446 (481)
T PTZ00377 395 G--------AMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKP-------------------- 446 (481)
T ss_pred e--------eEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCC--------------------
Confidence 4 6777766531100 000 11124577788999999998664211
Q ss_pred ccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 459 VCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 459 ~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
..+++|+|+. .+.++++..++.|.++++
T Consensus 447 ------------~~~~~Rls~~--~~~e~l~~~l~rl~~~~~ 474 (481)
T PTZ00377 447 ------------GTYHFRITIL--PPEEQIEEMVKKIKEFHE 474 (481)
T ss_pred ------------CCCEEEEEEC--CCHHHHHHHHHHHHHHHH
Confidence 1468999998 678899999999888764
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=218.93 Aligned_cols=340 Identities=14% Similarity=0.078 Sum_probs=224.2
Q ss_pred CCCeeeeCCCCCCCC-HHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc------CCCCCCceEEEcCC
Q 010538 39 NGTVYLDHAGATLYS-ELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF------NASMKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~------~~~~~~~~i~~t~g 111 (508)
++.+.|..+-...++ +.+.+++ .+.+.+ ....|... .....+|+.+++++ +++++ +|++|+|
T Consensus 31 ~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~----~~~~Y~~~----~g~~~lr~~ia~~~~~~~~~~~~~~--~i~~~~g 99 (393)
T PRK05764 31 RDVISLGAGEPDFDTPEHIKEAA-IEALDD----GKTKYTPA----AGIPELREAIAAKLKRDNGLDYDPS--QVIVTTG 99 (393)
T ss_pred CCEEEeCCCCCCCCCCHHHHHHH-HHHHhc----CCCCcCCC----CChHHHHHHHHHHHHHHhCCCCCHH--HEEEeCC
Confidence 566777776655553 4444444 333322 11112211 12456677777766 45666 8999999
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCC
Q 010538 112 ATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGAS 191 (508)
Q Consensus 112 ~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~ 191 (508)
+++|+.+++.++ ..+|+.|+++...|+.+... ++..|.+++.+|.+.+... .+|+++++ +.
T Consensus 100 ~~~a~~~~~~~~-~~~gd~vl~~~p~y~~~~~~---~~~~g~~~~~~~~~~~~~~-------------~~d~~~l~--~~ 160 (393)
T PRK05764 100 AKQALYNAFMAL-LDPGDEVIIPAPYWVSYPEM---VKLAGGVPVFVPTGEENGF-------------KLTVEQLE--AA 160 (393)
T ss_pred cHHHHHHHHHHh-cCCCCEEEecCCCCcchHHH---HHHcCCEEEEEecCcccCC-------------cCCHHHHH--Hh
Confidence 999999999988 67889999998777765444 4456999999998643222 12678888 55
Q ss_pred CCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCC----CCCCCC-----C
Q 010538 192 FPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCV----TQPPDL-----S 262 (508)
Q Consensus 192 l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g----~~~~d~-----~ 262 (508)
+ .+++++|++++++||||.++|.+.+.++++ +|+++|+++++|.+++.. ..+..+ .
T Consensus 161 l------~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~---------~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~ 225 (393)
T PRK05764 161 I------TPKTKALILNSPSNPTGAVYSPEELEAIAD---------VAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPE 225 (393)
T ss_pred h------CccceEEEEECCCCCCCcccCHHHHHHHHH---------HHHHCCcEEEEeccccceeeCCCCcccHHHcCCC
Confidence 4 357899999999999999999665555544 344499999999987642 111121 1
Q ss_pred CCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHH
Q 010538 263 KYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIR 340 (508)
Q Consensus 263 ~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~ 340 (508)
..+.++++.|++|+++ ++| +|+++.++++++.+...... ....++.....++.
T Consensus 226 ~~~~~i~~~s~SK~~~-~~G~RiG~i~~~~~~~~~~~~~~~~------------------------~~~~~~~~~q~~~~ 280 (393)
T PRK05764 226 LRDRTITVNGFSKAYA-MTGWRLGYAAGPKELIKAMSKLQSH------------------------STSNPTSIAQYAAV 280 (393)
T ss_pred CcCCEEEEecCccccc-CccceeEEEecCHHHHHHHHHHHhh------------------------cccCCChHHHHHHH
Confidence 2246789999999998 557 89999998887766543110 11122333333444
Q ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCC-ccCHHHHHH
Q 010538 341 HGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGS-WFGYREVEK 419 (508)
Q Consensus 341 ~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~l~~ 419 (508)
.+++. ....++..++++.++++++.+.|+++ +++.+..+.+ +.++++.++..... ..+..++.+
T Consensus 281 ~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~------~g~~~~~~~g--------~~~~~~~~~~~~~~~~~~~~~~~~ 345 (393)
T PRK05764 281 AALNG-PQDEVEEMRQAFEERRDLMVDGLNEI------PGLECPKPEG--------AFYVFPNVSKLLGKSITDSLEFAE 345 (393)
T ss_pred HHHcC-ChHHHHHHHHHHHHHHHHHHHHHhhC------CCCcccCCCc--------ceEEEEecccccccccCCHHHHHH
Confidence 44431 12235667788888889999999886 3677665543 56778777653111 012234555
Q ss_pred H-HhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 420 L-ASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 420 ~-L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
. ++++||.+++|..|.. .+++|+|++. +.++++.+++.|.++
T Consensus 346 ~l~~~~gi~v~~g~~f~~-----------------------------------~~~vRis~~~--~~~~~~~~i~~l~~~ 388 (393)
T PRK05764 346 ALLEEAGVAVVPGIAFGA-----------------------------------PGYVRLSYAT--SLEDLEEGLERIERF 388 (393)
T ss_pred HHHHhCCEEEccccccCC-----------------------------------CCEEEEEecC--CHHHHHHHHHHHHHH
Confidence 5 4678999999865421 4789999984 799999999999887
Q ss_pred hh
Q 010538 499 VN 500 (508)
Q Consensus 499 ~~ 500 (508)
++
T Consensus 389 ~~ 390 (393)
T PRK05764 389 LE 390 (393)
T ss_pred HH
Confidence 65
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-24 Score=231.15 Aligned_cols=344 Identities=10% Similarity=0.019 Sum_probs=221.9
Q ss_pred CCCeeeeCCCCC----CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc------CCCCCCceEEE
Q 010538 39 NGTVYLDHAGAT----LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF------NASMKDYKCIF 108 (508)
Q Consensus 39 ~~~iyld~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~------~~~~~~~~i~~ 108 (508)
.+.+.|+.+-.. ++|+.+++++.+... ... .|.. ......+|+.+|+++ +++++ +|++
T Consensus 146 ~~~i~l~~G~p~~~~~~~p~~~~~~~~~~~~-~~~-----~Y~~----~~G~~~lReaia~~~~~~~~~~~~~~--~I~i 213 (517)
T PRK13355 146 THILKLNIGNPAPFGFRTPDEVVYDMAQQLT-DTE-----GYSD----SKGLFSARKAIMQYAQLKGLPNVDVD--DIYT 213 (517)
T ss_pred CCeEEecCcCCCcCCCCCCHHHHHHHHHHhh-cCC-----CCCC----CcChHHHHHHHHHHHHhcCCCCCChh--HEEE
Confidence 578999985442 336777777665432 111 1221 122566788888887 67888 8999
Q ss_pred cCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhc
Q 010538 109 TSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRK 188 (508)
Q Consensus 109 t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~ 188 (508)
|+|+++++.+++.++ ..+|++|+++...|+.+.... +..|.+++.++.+.+..+ .+|+++++
T Consensus 214 t~G~~eal~~~~~~l-~~~Gd~Vli~~P~y~~y~~~~---~~~g~~~v~~~~~~~~~~-------------~~d~~~l~- 275 (517)
T PRK13355 214 GNGVSELINLSMSAL-LDDGDEVLIPSPDYPLWTACV---NLAGGTAVHYRCDEQSEW-------------YPDIDDIR- 275 (517)
T ss_pred eCcHHHHHHHHHHHh-CCCCCEEEEcCCCCcCHHHHH---HHCCCEEEEeecCcccCC-------------CCCHHHHH-
Confidence 999999999999998 688999999998887766544 446999999988654322 22788888
Q ss_pred CCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCCCCCCCC
Q 010538 189 GASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQPPDLSKY 264 (508)
Q Consensus 189 ~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d~~~~ 264 (508)
+++ +++|+++++++++||||.+++.+++.++++ +|++++++||+|+++.. +....++...
T Consensus 276 -~~~------~~~~k~i~i~nP~NPTG~v~~~~~l~~i~~---------~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~ 339 (517)
T PRK13355 276 -SKI------TSRTKAIVIINPNNPTGALYPREVLQQIVD---------IAREHQLIIFSDEIYDRLVMDGLEHTSIASL 339 (517)
T ss_pred -Hhc------CcCceEEEEECCCCCCCcCcCHHHHHHHHH---------HHHHcCcEEEEehhhhhhcCCCCCcccHHHh
Confidence 444 568899999999999999999666666655 45559999999999763 2222232222
Q ss_pred CCc---EEEEeccccccCCCc--ceEEEEe--chhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHH
Q 010538 265 PVD---FVVMSFYKIFGYPTG--LGALIMR--NDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIA 337 (508)
Q Consensus 265 ~~D---~~~~S~~K~~g~P~G--~G~l~~~--~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~ 337 (508)
..+ +++.|++|.|+ .+| +||++++ ++.++.+...+.- .. ......+.+...
T Consensus 340 ~~~~~vi~~~S~SK~~~-~~G~RiG~~i~~~~~~~~~~~~~~l~~--------------------~~-~~~~~~~~~~q~ 397 (517)
T PRK13355 340 APDLFCVTFSGLSKSHM-IAGYRIGWMILSGNKRIAKDYIEGLNM--------------------LA-NMRLCSNVPAQS 397 (517)
T ss_pred CCCCeEEEEecchhhcc-CcccceEEEEeeCchhhHHHHHHHHHH--------------------Hh-cCcCCcChHHHH
Confidence 122 44589999998 557 8999965 3332211110000 00 001123444445
Q ss_pred HHHHHHHHHH--hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCC-CCccCH
Q 010538 338 SIRHGFNLIN--SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPD-GSWFGY 414 (508)
Q Consensus 338 ~l~~al~~~~--~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~ 414 (508)
++..+++... +..+... +++.+.++++.+.|+++ +++++..|.+ +.+++++++... +..-+.
T Consensus 398 a~~~aL~~~~~~~~~~~~~-~~~~~~r~~l~~~L~~~------~g~~~~~p~g--------~fy~~~~l~~~~~~~~~~~ 462 (517)
T PRK13355 398 IVQTALGGHQSVKDYLVPG-GRVYEQRELVYNALNAI------PGISAVKPKA--------AFYIFPKIDVKKFNIHDDE 462 (517)
T ss_pred HHHHHhcCCccHHHHHHHH-HHHHHHHHHHHHHHhcC------CCcccCCCCe--------eeEEEeecCcccCCCCCHH
Confidence 5555553110 0012222 34455678899999887 3677766553 566666775310 000012
Q ss_pred HHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHh
Q 010538 415 REVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCS 494 (508)
Q Consensus 415 ~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~ 494 (508)
..+.++|.++||.+.+|..|... .++++|||+. .+.++++..++.
T Consensus 463 ~~~~~ll~~~gV~v~pg~~F~~~---------------------------------~~~~~Ris~~--~~~~~l~~a~~r 507 (517)
T PRK13355 463 QFALDLLHDKKVLIVQGTGFNWD---------------------------------KPDHFRVVYL--PRLEDLEDAMDR 507 (517)
T ss_pred HHHHHHHHhCCEEEeCcchhCCC---------------------------------CcCEEEEEeC--CCHHHHHHHHHH
Confidence 33567788999999999765321 2678999995 688999999999
Q ss_pred hhhhhh
Q 010538 495 SFDFVN 500 (508)
Q Consensus 495 ~~~~~~ 500 (508)
|.++++
T Consensus 508 l~~~~~ 513 (517)
T PRK13355 508 LADFFS 513 (517)
T ss_pred HHHHHH
Confidence 888775
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=219.90 Aligned_cols=338 Identities=12% Similarity=0.066 Sum_probs=221.3
Q ss_pred CeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHH
Q 010538 41 TVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLV 119 (508)
Q Consensus 41 ~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~ 119 (508)
..|..|...+. .+|.+++++.+.. ..+..+.. ....-+.......++++.+|+++|.+ + .|++++| ++|+..+
T Consensus 49 ~~~~sn~yl~l~~~p~v~~a~~~~~-~~~~~~~~-~s~~~~~~~~~~~~Le~~la~~~g~~-~--~i~~~sG-~~a~~~~ 122 (410)
T PRK13392 49 TIWCSNDYLGMGQHPDVIGAMVDAL-DRYGAGAG-GTRNISGTSHPHVLLERELADLHGKE-S--ALLFTSG-YVSNDAA 122 (410)
T ss_pred EEEECCCccCCCCCHHHHHHHHHHH-HHcCCCCc-hhhhcccChHHHHHHHHHHHHHhCCC-C--EEEECcH-HHHHHHH
Confidence 45555555444 3777778776544 22211111 11111112334678899999999964 4 5777776 4577777
Q ss_pred HhhcC-CCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCC
Q 010538 120 GEAFP-WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPA 198 (508)
Q Consensus 120 ~~~l~-~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~ 198 (508)
+..+. ..+|+.|+++...|.++... ++..|+++..++.+. .+++ .+.++ ...
T Consensus 123 i~~l~~~~~g~~vi~~~~~h~s~~~~---~~~~g~~~~~~~~~d---~~~l-------------~~~l~--------~~~ 175 (410)
T PRK13392 123 LSTLGKLLPGCVILSDALNHASMIEG---IRRSGAEKQVFRHND---LADL-------------EEQLA--------SVD 175 (410)
T ss_pred HHHHhcCCCCCEEEEehhhhHHHHHH---HHHcCCeEEEEeCCC---HHHH-------------HHHHH--------hcc
Confidence 76553 24678888887788876543 344688887775431 1111 12222 112
Q ss_pred CCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCC---C---C--CCCCcEEE
Q 010538 199 GDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPD---L---S--KYPVDFVV 270 (508)
Q Consensus 199 ~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d---~---~--~~~~D~~~ 270 (508)
.++|++|++++++||||.+.|+++|.++|++ +|+++++|++|+.|..... + . ..++|+++
T Consensus 176 ~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~------------~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~ 243 (410)
T PRK13392 176 PDRPKLIAFESVYSMDGDIAPIEAICDLADR------------YNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQ 243 (410)
T ss_pred CCCCEEEEEeCCCCCCcccccHHHHHHHHHH------------cCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEE
Confidence 4578999999999999999999999999998 8999999999986542111 0 0 11468999
Q ss_pred EeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcC
Q 010538 271 MSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLT 350 (508)
Q Consensus 271 ~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g 350 (508)
.|++|.||.+ | |+++.++++++.++....+ ..+ ..+.+....+++.++++.+...
T Consensus 244 ~tlsK~~g~~-G-G~~~~~~~~~~~l~~~~~~---------------------~~~-s~~~~~~~~~a~~aaL~~~~~~- 298 (410)
T PRK13392 244 GTLAKAFGCL-G-GYIAASADLIDFVRSFAPG---------------------FIF-TTALPPAVAAGATAAIRHLKTS- 298 (410)
T ss_pred EEChHhhhcc-c-chhhcCHHHHHHHHHhCcc---------------------hhc-cCcCCHHHHHHHHHHHHHHhcC-
Confidence 9999999954 6 8888888887655432111 001 1223445577777888876653
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHH-hhCCCeec
Q 010538 351 VPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLA-SLSGIQLR 429 (508)
Q Consensus 351 ~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L-~~~gI~v~ 429 (508)
....+++.++++++++.|+++ ++++..+. ++++.+.++.. ....++.+.| +++||.++
T Consensus 299 -~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~---------~~~~~i~~~~~----~~~~~~~~~L~~~~GI~v~ 357 (410)
T PRK13392 299 -QTERDAHQDRVAALKAKLNAN-------GIPVMPSP---------SHIVPVMVGDP----TLCKAISDRLMSEHGIYIQ 357 (410)
T ss_pred -HHHHHHHHHHHHHHHHHHHHc-------CCCCCCCC---------CCEEEEEeCCH----HHHHHHHHHHHHhCCEEEe
Confidence 455677889999999999886 56554322 56766665431 1123467766 57899998
Q ss_pred cCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 430 TGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 430 ~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
++.....+. ..+++|++++.++|.+|+++++++|+++.+.
T Consensus 358 ~~~~p~~~~--------------------------------~~~~lRis~~~~~t~edid~l~~aL~~~~~~ 397 (410)
T PRK13392 358 PINYPTVPR--------------------------------GTERLRITPTPLHDDEDIDALVAALVAIWDR 397 (410)
T ss_pred eeCCCCCCC--------------------------------CCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 754222211 1468999999999999999999999987653
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-24 Score=227.09 Aligned_cols=369 Identities=12% Similarity=-0.002 Sum_probs=240.5
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCC-----ceEEEcCChH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKD-----YKCIFTSGAT 113 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~-----~~i~~t~g~t 113 (508)
...-||.+-.+++.++.++..++... +.+....+..++....+...+.+++++++|.+... -..++|+|+|
T Consensus 81 ~hP~f~~~~~~~~~~~~~lad~l~~~----~n~~~~~~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs 156 (490)
T PLN02880 81 QSPNYFAYYPSNSSVAGFLGEMLSAG----LNIVGFSWITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTAS 156 (490)
T ss_pred CCCCeeEeccCCCcHHHHHHHHHHHh----hccCCcccccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccH
Confidence 34667888766666666665554433 22333334445556778888999999999997530 0378999999
Q ss_pred HHHHHHHhhcCC--------C--CCCeEEEecccccchHHHHHHHHhcCC---eEEEEccCC--ccCccccccccccccc
Q 010538 114 AALKLVGEAFPW--------S--HQSSYMYTMENHNSVLGIREYALSQGA---AAFAIDVEE--AVDNDGLSESLVTSTK 178 (508)
Q Consensus 114 ~al~~~~~~l~~--------~--~g~~vl~~~~~h~s~~~~~~~~~~~G~---~v~~v~~~~--~~~~~~l~~~~~~~~~ 178 (508)
+|+..++.+... . +.-+|++++..|.|+....+.+ |+ .++.||.+. .+.+
T Consensus 157 ~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~Kaa~~l---Glg~~~v~~Vp~d~~~~~~m------------ 221 (490)
T PLN02880 157 EAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKACQIA---GIHPENCRLLKTDSSTNYAL------------ 221 (490)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHHHHHHc---CCCHHHEEEeecCCCcCCcC------------
Confidence 998665543211 0 2236677888899988777765 65 478889874 3455
Q ss_pred cccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCC
Q 010538 179 ISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQP 258 (508)
Q Consensus 179 ~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~ 258 (508)
|+++|+ ++|++....+..+.+|+.+...+.+|.+.|+++|.++|++ +|+|+|||++++.+...
T Consensus 222 ---d~~~L~--~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~------------~~iwlHVDaA~gg~~~~ 284 (490)
T PLN02880 222 ---APELLS--EAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKS------------NGMWFHVDAAYAGSACI 284 (490)
T ss_pred ---CHHHHH--HHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHH------------cCCEEEEehhhHHHHHh
Confidence 688888 6665332234557889999999999999999999999998 99999999999987654
Q ss_pred C-----CCCC-CCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEe-c-c--cchhhhhhccCccccccC
Q 010538 259 P-----DLSK-YPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAA-S-I--ADIDFVKRRQGVEELFED 328 (508)
Q Consensus 259 ~-----d~~~-~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~-~-~--~~~~~~~~~~~~~~~~~~ 328 (508)
. .+.. .++|+++.++|||++.|.|+|++++++... ...+...++..... . . ...++. ....+.
T Consensus 285 ~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~~~-l~~~~~~~~~Yl~~~~~~~~~~~~~~------~~~i~~ 357 (490)
T PLN02880 285 CPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNA-LIQSLSTNPEFLKNKASQANSVVDYK------DWQIPL 357 (490)
T ss_pred CHHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCHHH-HHHHHccCHHHhcCccccccCCCChh------ccCcCC
Confidence 3 2333 268999999999988899999999996432 12222111110000 0 0 000000 011111
Q ss_pred CCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCC
Q 010538 329 GTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPD 408 (508)
Q Consensus 329 gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 408 (508)
|.. + ....++.+++.+...|+.++.++..++++++.+.|++. ++++++.++. .++++|+++...
T Consensus 358 ~rr-~-~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~------~~~el~~~~~--------~~iv~Fr~~~~~ 421 (490)
T PLN02880 358 GRR-F-RSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQD------SRFEVVTPRI--------FSLVCFRLVPPK 421 (490)
T ss_pred CCc-c-cHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcC------CCEEEecCCc--------eEEEEEEEeCCC
Confidence 111 1 12355556666555556666666669999999999887 4799998765 689999987421
Q ss_pred CC--ccCH--HHHHHHHhhCCCe-eccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCC
Q 010538 409 GS--WFGY--REVEKLASLSGIQ-LRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMS 483 (508)
Q Consensus 409 ~~--~~~~--~~l~~~L~~~gI~-v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 483 (508)
.. ..+. ..+.+.|.+.|-. +..... ....++|++++.++
T Consensus 422 ~~~~~~~~~n~~l~~~l~~~g~~~v~~t~~------------------------------------~g~~~lR~~~~n~~ 465 (490)
T PLN02880 422 NNEDNGNKLNHDLLDAVNSSGKIFISHTVL------------------------------------SGKYVLRFAVGAPL 465 (490)
T ss_pred CChhhHHHHHHHHHHHHHhCCCEEEEEEEE------------------------------------CCEEEEEEEecCCC
Confidence 11 0010 2244455444444 433210 02468999999776
Q ss_pred C-HHHHHHHHHhhhhhhhhh
Q 010538 484 T-FEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 484 t-~eev~~l~~~~~~~~~~~ 502 (508)
| .+|++.+++.|.+..+.+
T Consensus 466 tt~~di~~~~~~i~~~~~~~ 485 (490)
T PLN02880 466 TEERHVTAAWKVLQDEASKL 485 (490)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 6 599999999998876654
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=216.94 Aligned_cols=298 Identities=13% Similarity=0.067 Sum_probs=201.0
Q ss_pred HHHHHHHHHHHcC-CCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCcc
Q 010538 86 VRAAREQVLDYFN-ASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAV 164 (508)
Q Consensus 86 ~~~~r~~la~~~~-~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~ 164 (508)
...+|+.+|++++ ++++ +|++|+|+++|+.+++.++ ..+|++|+++...|+++ ...++..|++++.+|++.+.
T Consensus 64 ~~~lr~~ia~~~~~~~~~--~vi~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~---~~~~~~~g~~v~~v~~~~~~ 137 (373)
T PRK07324 64 SPEFKEAVASLYQNVKPE--NILQTNGATGANFLVLYAL-VEPGDHVISVYPTYQQL---YDIPESLGAEVDYWQLKEEN 137 (373)
T ss_pred CHHHHHHHHHHhcCCChh--hEEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCchhH---HHHHHHcCCEEEEEeccccc
Confidence 4578899999885 6777 8999999999999999998 68899999876555444 44556679999999987532
Q ss_pred CccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCe
Q 010538 165 DNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRW 244 (508)
Q Consensus 165 ~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~ 244 (508)
.. .+|+++++ +++ .++|++|++++++||||.++|.+++.++++ +|+++|+
T Consensus 138 ~~-------------~~d~~~l~--~~~------~~~~kli~i~~p~NPtG~~~~~~~l~~i~~---------~a~~~~~ 187 (373)
T PRK07324 138 GW-------------LPDLDELR--RLV------RPNTKLICINNANNPTGALMDRAYLEEIVE---------IARSVDA 187 (373)
T ss_pred CC-------------CCCHHHHH--HhC------CCCCcEEEEeCCCCCCCCCCCHHHHHHHHH---------HHHHCCC
Confidence 22 12678888 444 467899999999999999999544444433 2334999
Q ss_pred EEEEeccccCCCC---CCCCCC-CCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhh
Q 010538 245 MVLIDAAKGCVTQ---PPDLSK-YPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKR 318 (508)
Q Consensus 245 ~vivD~a~~~g~~---~~d~~~-~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~ 318 (508)
++++|+++..-.. ..++.. .+..+++.|++|.|| .+| +||+++++++++.+......
T Consensus 188 ~ii~De~y~~l~~~~~~~s~~~~~~~~I~~~s~SK~~~-~~G~RiG~i~~~~~li~~~~~~~~~---------------- 250 (373)
T PRK07324 188 YVLSDEVYRPLDEDGSTPSIADLYEKGISTNSMSKTYS-LPGIRVGWIAANEEVIDILRKYRDY---------------- 250 (373)
T ss_pred EEEEEccccccccCCCCCChhhccCCEEEEecchhhcC-CccceeEEEecCHHHHHHHHHHhCc----------------
Confidence 9999999753111 122221 133578889999998 557 79999988887766543110
Q ss_pred ccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCc
Q 010538 319 RQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGS 398 (508)
Q Consensus 319 ~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (508)
...++..+.+. +...+++...+ .++..++.+++.++.+.+.|++. +++....|.+ +.
T Consensus 251 -------~~~~~~~~~q~-~a~~~l~~~~~-~l~~~~~~~~~~~~~l~~~l~~~------~~~~~~~p~g--------g~ 307 (373)
T PRK07324 251 -------TMICAGVFDDM-LASLALEHRDA-ILERNRKIVRTNLAILDEWVAKE------PRVSYVKPKA--------VS 307 (373)
T ss_pred -------EEecCChHHHH-HHHHHHcCHHH-HHHHHHHHHHHHHHHHHHHHhcC------CCceEECCCc--------eE
Confidence 00112222222 22334432222 24566677777888888888775 3566665543 45
Q ss_pred eEEEEeeCCCCCccCHHHHHHH-HhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEE
Q 010538 399 MVSFNLKRPDGSWFGYREVEKL-ASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRV 477 (508)
Q Consensus 399 ~v~~~~~~~~~~~~~~~~l~~~-L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRi 477 (508)
++++.++.. .+..++.+. ++++||.+.+|..+. .++++||
T Consensus 308 ~~~i~~~~~----~~~~~~~~~ll~~~gv~v~pg~~F~-----------------------------------~~~~iRi 348 (373)
T PRK07324 308 TSFVKLDVD----MPSEDFCLKLLKETGVLLVPGNRFD-----------------------------------LEGHVRI 348 (373)
T ss_pred EEEEEeCCC----CCHHHHHHHHHHhcCEEEECccccC-----------------------------------CCCeEEE
Confidence 566666532 223345555 578899999987542 1578999
Q ss_pred ecCCCCCHHHHHHHHHhhhhhhh
Q 010538 478 SFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 478 s~~~~~t~eev~~l~~~~~~~~~ 500 (508)
|++. +.+.+...++.|+++++
T Consensus 349 s~~~--~~~~l~~~l~rl~~~l~ 369 (373)
T PRK07324 349 GYCC--DTETLKKGLKKLSEFLR 369 (373)
T ss_pred EecC--CHHHHHHHHHHHHHHHH
Confidence 9984 67888888888877664
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-24 Score=219.16 Aligned_cols=335 Identities=13% Similarity=0.066 Sum_probs=213.7
Q ss_pred CCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHH
Q 010538 40 GTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLV 119 (508)
Q Consensus 40 ~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~ 119 (508)
+.+-|..+..+.+++.+.+++.. .. .....+..+ ....++++.++++++.+. +++++++|+++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~a~~~-~~-----~~~~~~~~~----~~~~~l~~~la~~~~~~~----~~~~~~Gs~a~~~~ 71 (353)
T PLN02721 6 RVVDLRSDTVTKPTDAMRAAMAN-AE-----VDDDVLGYD----PTALRLEEEMAKIFGKEA----ALFVPSGTMGNLIS 71 (353)
T ss_pred hhhhhhcccccCCCHHHHHHHHh-cc-----CCCcccCCC----HHHHHHHHHHHHHhCCce----eEEecCccHHHHHH
Confidence 34555556666667777776532 10 011111111 225778999999999863 45666667777777
Q ss_pred HhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCC-C
Q 010538 120 GEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP-A 198 (508)
Q Consensus 120 ~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~-~ 198 (508)
+.++...+|++|++++..|.+.......+...|++++.+|.+.++.+ |+++++ +.+++... .
T Consensus 72 l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~--~~i~~~~~~~ 134 (353)
T PLN02721 72 VLVHCDVRGSEVILGDNSHIHLYENGGISTLGGVHPRTVKNNEDGTM---------------DLDAIE--AAIRPKGDDH 134 (353)
T ss_pred HHHHccCCCCeEEEcCccceehhcccchhhhcCceeEecCCCcCCCc---------------CHHHHH--HHHHhccCCC
Confidence 77763338999999988886655422244557999999988765555 678888 66532110 1
Q ss_pred CCCceEEEEeCC-CCCCccccCH---HHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC---CCCCC--CCCCcEE
Q 010538 199 GDAYNLFAFPSE-CNFSGSRFNL---DLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ---PPDLS--KYPVDFV 269 (508)
Q Consensus 199 ~~~t~lv~~~~~-~n~tG~~~~i---~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~---~~d~~--~~~~D~~ 269 (508)
.+++++|+++++ +|++|.++|. ++|.++|++ +|+++++|+++.++.. ..+.. ..++|++
T Consensus 135 ~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~------------~g~~livD~a~~~~~~~~~~~~~~~~~~~~d~~ 202 (353)
T PLN02721 135 FPTTRLICLENTHANCGGRCLSVEYTDKVGELAKR------------HGLKLHIDGARIFNASVALGVPVHRLVKAADSV 202 (353)
T ss_pred CCcceEEEEeccccccCCccccHHHHHHHHHHHHH------------cCCEEEEEchhhhcchhhhCCCHHHHhhhCCEE
Confidence 157899999774 6778999995 566666765 9999999999876531 12221 2268999
Q ss_pred EEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhc
Q 010538 270 VMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSL 349 (508)
Q Consensus 270 ~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~ 349 (508)
+.|+||++++|.| |+++.++++++.+...... ..+++...+..+.. ++.-+.+
T Consensus 203 ~~s~sK~l~~~~G-~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~-~~~~l~~- 255 (353)
T PLN02721 203 SVCLSKGLGAPVG-SVIVGSKSFIRKAKRLRKT------------------------LGGGMRQVGVLAAA-ALVALQE- 255 (353)
T ss_pred EEecccccCCcee-eEEecCHHHHHhHHHHHHh------------------------cCCCeehhHHHHHH-HHHHHHH-
Confidence 9999999996644 4566777776654432110 01111111111111 1111111
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEE-ecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCee
Q 010538 350 TVPAICRHIASLGMYVRKVLLSLRHENGADVCTI-YGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQL 428 (508)
Q Consensus 350 g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v 428 (508)
..+. .++..++++++.+.|++++ ++++ +.++. +++++++++...+ .+...+.+.|.++||.+
T Consensus 256 ~~~~-~~~~~~~~~~l~~~L~~~~------~~~~~~~~~~--------~~~~~~~~~~~~~--~~~~~~~~~L~~~gi~v 318 (353)
T PLN02721 256 NVPK-LEDDHKKAKLLAEGLNQIK------GLRVNVAAVE--------TNIVYFDITDGSR--ITAEKLCKSLEEHGVLL 318 (353)
T ss_pred HHHH-HHHHHHHHHHHHHHHHhCC------CcEEecCCcc--------ceEEEEEccCCcc--ccHHHHHHHHHhCCcEE
Confidence 1222 3344667889999998873 5654 33322 6789898864211 23346889999999999
Q ss_pred ccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 429 RTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 429 ~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
+++. .+++|++++++++.+|+++++++|++.+.
T Consensus 319 ~~~~---------------------------------------~~~lR~~~~~~~~~~~i~~~~~~l~~~~~ 351 (353)
T PLN02721 319 MPGN---------------------------------------SSRIRVVTHHQISDSDVQYTLSCFQQAAL 351 (353)
T ss_pred ecCC---------------------------------------CceEEEEecCcCCHHHHHHHHHHHHHHhh
Confidence 8752 46899999999999999999999988654
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-23 Score=216.94 Aligned_cols=345 Identities=12% Similarity=-0.002 Sum_probs=219.8
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCC--CCCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA--SMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~--~~~~~~i~~t~g~t~a 115 (508)
.+.+.|..+-... .|+.+.+++.+.... ....|.......++.+.+.+.+.+.+|. ++++ +|++|+|+++|
T Consensus 26 ~~~i~l~~g~p~~~~p~~~~~~~~~~~~~-----~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~-~i~~t~G~~~a 99 (387)
T PRK08912 26 HGAINLGQGFPDDPGPEDVRRAAADALLD-----GSNQYPPMMGLPELRQAVAAHYARFQGLDLDPET-EVMVTSGATEA 99 (387)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhc-----CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcc-cEEEeCCcHHH
Confidence 4567777654333 355566655443221 1112222111223333333344333454 4431 69999999999
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC-ccCccccccccccccccccchhhhhcCCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE-AVDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
+.+++.++ ..+|++|+++...|+.+.. .++..|++++.+|++. +..+ |++.++ +++
T Consensus 100 l~~~~~~~-~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~~~---------------~~~~l~--~~~-- 156 (387)
T PRK08912 100 LAAALLAL-VEPGDEVVLFQPLYDAYLP---LIRRAGGVPRLVRLEPPHWRL---------------PRAALA--AAF-- 156 (387)
T ss_pred HHHHHHHh-cCCCCEEEEeCCCchhhHH---HHHHcCCEEEEEecCcccCcC---------------CHHHHH--HHh--
Confidence 99999988 6789999999877766554 4456799999999864 2333 578888 544
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCCCC---CCC-CCC
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQPPD---LSK-YPV 266 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d---~~~-~~~ 266 (508)
.++++++++++++||||.++|.+++.++++ +|+++++++|+|++++. +..... +.. .+.
T Consensus 157 ----~~~~~~v~l~~p~NPtG~~~s~~~~~~i~~---------~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~ 223 (387)
T PRK08912 157 ----SPRTKAVLLNNPLNPAGKVFPREELALLAE---------FCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRER 223 (387)
T ss_pred ----CccceEEEEeCCCCCcCcccCHHHHHHHHH---------HHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCc
Confidence 457899999999999999999777666555 44459999999999853 111111 111 245
Q ss_pred cEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHH
Q 010538 267 DFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFN 344 (508)
Q Consensus 267 D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~ 344 (508)
++++.|++|.|| ++| +||++++++.++.+...... ...+.+.....++..++.
T Consensus 224 ~i~~~S~SK~~g-~~GlRiG~~~~~~~~~~~l~~~~~~------------------------~~~~~~~~~q~~~~~~l~ 278 (387)
T PRK08912 224 TVKIGSAGKIFS-LTGWKVGFVCAAPPLLRVLAKAHQF------------------------LTFTTPPNLQAAVAYGLG 278 (387)
T ss_pred eEEEeechhhcc-CcCceeEEEecCHHHHHHHHHHHhh------------------------ccccCChHHHHHHHHHHh
Confidence 799999999999 668 89999999887766543100 001112222333333332
Q ss_pred HHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHH-hh
Q 010538 345 LINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLA-SL 423 (508)
Q Consensus 345 ~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L-~~ 423 (508)
.. +..+++.++++.+.++++.+.|++. ++++..+.+ +.++++.++.... ..+..++.+.| ++
T Consensus 279 ~~-~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~g--------~~~l~~~l~~~~~-~~~~~~~~~~l~~~ 341 (387)
T PRK08912 279 KP-DDYFEGMRADLARSRDRLAAGLRRI-------GFPVLPSQG--------TYFLTVDLAPLGL-AEDDVAFCRRLVEE 341 (387)
T ss_pred CC-HHHHHHHHHHHHHHHHHHHHHHHhC-------CCcccCCCc--------ceEEEecccccCC-CCCHHHHHHHHHhc
Confidence 11 1124677888899999999999886 566665433 6788888864210 02233466665 67
Q ss_pred CCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 424 SGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 424 ~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
+||.+.+|..+.... ...+++|+|++. ..++++..++.|.++++
T Consensus 342 ~gV~v~pg~~f~~~~-------------------------------~~~~~iRl~~~~--~~~~l~~~l~rl~~~l~ 385 (387)
T PRK08912 342 AGVAAIPVSAFYEED-------------------------------PVTSVVRFCFAK--RDATLDEAVERLAAARR 385 (387)
T ss_pred CCEEEecchhhCCCC-------------------------------CCCCEEEEEEeC--CHHHHHHHHHHHHHHHh
Confidence 899999987553211 025799999995 57888888888776553
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-23 Score=221.77 Aligned_cols=357 Identities=12% Similarity=0.056 Sum_probs=227.7
Q ss_pred chHHHHHHhhccC----CCCCeeeeCCCCC-----CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHH
Q 010538 25 SIDQIRATEFKRL----ENGTVYLDHAGAT-----LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLD 95 (508)
Q Consensus 25 ~~~~~r~~~f~~~----~~~~iyld~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~ 95 (508)
++..+....|... ++++++|..+-.. .+++.+.+++.+.... .....|... .....+|+.+|+
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~----~~~~~Y~~~----~G~~~lR~aiA~ 119 (462)
T PLN02187 48 TLRGVIYMLFDNCGKDVNKTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRS----GKGNSYGPG----AGILPARRAVAD 119 (462)
T ss_pred hHhhHHHHHHhhcccCCCCCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhC----CCCCCCCCC----CChHHHHHHHHH
Confidence 4555544233322 2679999988443 2244565655443321 111122111 124557777777
Q ss_pred Hc------CCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCcccc
Q 010538 96 YF------NASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGL 169 (508)
Q Consensus 96 ~~------~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l 169 (508)
++ +++++ +|++|+|+++|+.+++.++ .++|+.|+++...|+.+... ++..|++++.+++......
T Consensus 120 ~~~~~~~~~~~~~--~I~it~G~~~al~~~~~~l-~~pGd~Vlv~~P~y~~y~~~---~~~~g~~~~~~~l~~~~~~--- 190 (462)
T PLN02187 120 YMNRDLPHKLTPE--DIFLTAGCNQGIEIVFESL-ARPNANILLPRPGFPHYDAR---AAYSGLEVRKFDLLPEKEW--- 190 (462)
T ss_pred HHHHhcCCCCCcc--cEEEeCCHHHHHHHHHHHh-cCCCCEEEEeCCCCccHHHH---HHHcCCEEEEEeCccccCC---
Confidence 76 36787 8999999999999999999 68999999999888766443 4456999999987432111
Q ss_pred ccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEe
Q 010538 170 SESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLID 249 (508)
Q Consensus 170 ~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD 249 (508)
..|+++++ +++ +++++++++++++||||.+++.+++.++++ +|+++|++||+|
T Consensus 191 ----------~~d~~~l~--~~~------~~~~~~v~i~nP~NPTG~v~s~e~l~~i~~---------~a~~~~i~iI~D 243 (462)
T PLN02187 191 ----------EIDLEGIE--AIA------DENTVAMVVINPNNPCGNVYSHDHLKKVAE---------TARKLGIMVISD 243 (462)
T ss_pred ----------ccCHHHHH--Hhc------CCCcEEEEEeCCCCCCCCccCHHHHHHHHH---------HHHHCCCEEEEe
Confidence 12688888 544 457899999999999999999777776665 455699999999
Q ss_pred ccccC----CCCCCCCCCC---CCcEEEEeccccccCCCc--ceEEEEe-ch-h---HhhhccccccCceEEecccchhh
Q 010538 250 AAKGC----VTQPPDLSKY---PVDFVVMSFYKIFGYPTG--LGALIMR-ND-A---AKLLKNTYFSGGTVAASIADIDF 315 (508)
Q Consensus 250 ~a~~~----g~~~~d~~~~---~~D~~~~S~~K~~g~P~G--~G~l~~~-~~-~---~~~l~~~~~g~~~~~~~~~~~~~ 315 (508)
+++.. +....++... ..-+++.|++|.|+.| | +||+++. ++ . ++.+....
T Consensus 244 E~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~p-GlRiG~~v~~~p~~~~~~~~~~~~~~--------------- 307 (462)
T PLN02187 244 EVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVVP-GWKIGWIALNDPEGVFETTKVLQSIK--------------- 307 (462)
T ss_pred ccccccccCCCCceeHHHhccCCcEEEEecchhhcCCc-cceeEEEEecCchhHHHHHHHHHHHH---------------
Confidence 99864 2111222222 1247788999998844 7 8999984 32 2 12222210
Q ss_pred hhhccCccccccC-CCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEe-cCCCCCccc
Q 010538 316 VKRRQGVEELFED-GTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIY-GTYTSEVSY 393 (508)
Q Consensus 316 ~~~~~~~~~~~~~-gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~-~~~~~~~~~ 393 (508)
..+.. ..++.....++.++++......++..++.+.+.++++.+.|++++ ++..+ .|.+
T Consensus 308 --------~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~~~L~~~~------~~~~~~~P~g----- 368 (462)
T PLN02187 308 --------QNLDVTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKDIP------CVVCPKKPES----- 368 (462)
T ss_pred --------HhccccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCC------CCcCCCCCCE-----
Confidence 00111 123444455555555421112367778888889999999998762 33222 2322
Q ss_pred CCCCceEEEEeeCCCCCcc-CH-HHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCC
Q 010538 394 HDTGSMVSFNLKRPDGSWF-GY-REVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKP 471 (508)
Q Consensus 394 ~~~~~~v~~~~~~~~~~~~-~~-~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 471 (508)
+++++++++......+ +. ..+.+++.++||.+.+|..|. .
T Consensus 369 ---g~fl~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg-----------------------------------~ 410 (462)
T PLN02187 369 ---CTYLLTKLELSLMDNIKDDIDFCVKLAREENLVFLPGDALG-----------------------------------L 410 (462)
T ss_pred ---eEEEEeecChhhCCCCCCHHHHHHHHHhhCCEEEECccccC-----------------------------------C
Confidence 6888887752110001 12 234566789999999987542 1
Q ss_pred CceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 472 TGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 472 ~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
.+++||+++. ..++++..++.|.++++
T Consensus 411 ~~~iRis~~~--~~e~l~~al~rL~~~l~ 437 (462)
T PLN02187 411 KNWMRITIGV--EAHMLEDALERLKGFCT 437 (462)
T ss_pred CCeEEEEeCC--CHHHHHHHHHHHHHHHH
Confidence 5799999984 57888888888887764
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-23 Score=215.44 Aligned_cols=327 Identities=13% Similarity=0.045 Sum_probs=225.9
Q ss_pred CCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHH
Q 010538 40 GTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKL 118 (508)
Q Consensus 40 ~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~ 118 (508)
..+.|+.+..+ .+++.+++++.+.. ..... |... ....+|+++|++++++++ +|++|+|+++++.+
T Consensus 33 ~~~~l~~~~~~~~~~~~~~~a~~~~~-~~~~~-----Y~~~-----~~~~Lr~~ia~~~~~~~~--~I~it~G~~~~l~~ 99 (369)
T PRK08153 33 FRARIGANESGFGPSPSVIAAMREAA-AEIWK-----YGDP-----ENHDLRHALAAHHGVAPE--NIMVGEGIDGLLGL 99 (369)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHH-HHhhc-----CCCC-----ccHHHHHHHHHHhCCCHH--HEEEcCCHHHHHHH
Confidence 35688877644 34666777665432 22111 1111 146789999999999988 89999999999999
Q ss_pred HHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCC
Q 010538 119 VGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPA 198 (508)
Q Consensus 119 ~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~ 198 (508)
++.++ .++|+.|++....||.+.... +..|.+++.+|.+.+. + |++.+. +.+ .
T Consensus 100 ~~~~~-~~~gd~vlv~~p~y~~~~~~~---~~~g~~~~~vp~~~~~-~---------------~~~~l~--~~~-----~ 152 (369)
T PRK08153 100 IVRLY-VEPGDPVVTSLGAYPTFNYHV---AGFGGRLVTVPYRDDR-E---------------DLDALL--DAA-----R 152 (369)
T ss_pred HHHHh-cCCCCEEEECCCcchHHHHHH---HHcCCeEEEeeCCCCC-C---------------CHHHHH--HHh-----c
Confidence 99988 578999999887777665443 3468999999986543 2 466665 332 1
Q ss_pred CCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC---CCCCCCC-CCCcEEEEecc
Q 010538 199 GDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT---QPPDLSK-YPVDFVVMSFY 274 (508)
Q Consensus 199 ~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~---~~~d~~~-~~~D~~~~S~~ 274 (508)
.++++++++++++||||.++|.+++.++++. |+ ++++||+|++++.-. ....+.. .+..+++.|++
T Consensus 153 ~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~~---------~~-~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~i~~~SfS 222 (369)
T PRK08153 153 RENAPLVYLANPDNPMGSWHPAADIVAFIEA---------LP-ETTLLVLDEAYCETAPAGAAPPIDTDDPNVIRMRTFS 222 (369)
T ss_pred ccCCcEEEEeCCCCCCCCCCCHHHHHHHHHh---------CC-CCcEEEEeCchhhhcCcccchhhhhcCCCEEEEecch
Confidence 3578999999999999999999999999984 54 489999999976311 1112221 12347899999
Q ss_pred ccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChH
Q 010538 275 KIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVP 352 (508)
Q Consensus 275 K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~ 352 (508)
|.+| .+| +||++++++.++.+..... ..+.+.....++.++++- ..-++
T Consensus 223 K~~g-~~GlRiG~~v~~~~~~~~l~~~~~--------------------------~~~~s~~~q~~~~~~l~~--~~~~~ 273 (369)
T PRK08153 223 KAYG-LAGARVGYAIGAPGTIKAFDKVRN--------------------------HFGMNRIAQAAALAALKD--QAYLA 273 (369)
T ss_pred Hhcc-CcchheeeeecCHHHHHHHHHhhc--------------------------CCCCCHHHHHHHHHHhcC--HHHHH
Confidence 9998 447 7999999888766553310 112344555555555541 11256
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeec-cC
Q 010538 353 AICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLR-TG 431 (508)
Q Consensus 353 ~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~-~g 431 (508)
...+++.+.++++.+.|++. ++.++ |.. ++++++.++.. . .....+.+.|.++||.++ +|
T Consensus 274 ~~~~~~~~~r~~~~~~L~~~-------g~~~~-p~~--------~~f~~~~~~~~-~--~~a~~l~~~l~~~Gi~v~~p~ 334 (369)
T PRK08153 274 EVVGKIAAARDRIAAIARAN-------GLTPL-PSA--------TNFVAIDCGRD-G--AFARAVLDGLIARDIFVRMPG 334 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHC-------CCccC-CCc--------CcEEEEECCCC-c--ccHHHHHHHHHHCCeEEeeCC
Confidence 67788888888898888875 45433 322 67888876421 1 123457788888999996 43
Q ss_pred CCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhh
Q 010538 432 CFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 432 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~ 503 (508)
.. ..++++|+|++ +.+|+++++++++++++..|
T Consensus 335 ~~------------------------------------~~~~~iRis~~---~~~~~~~~~~al~~~~~~~~ 367 (369)
T PRK08153 335 VA------------------------------------PLDRCIRVSCG---PDEELDLFAEALPEALEAAR 367 (369)
T ss_pred CC------------------------------------CCCCeEEEecC---CHHHHHHHHHHHHHHHHHhh
Confidence 21 01468999998 89999999999999887554
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-24 Score=202.76 Aligned_cols=396 Identities=15% Similarity=0.138 Sum_probs=290.0
Q ss_pred cCCCCCCCCchHHHHHHhhccC---------------CCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhh
Q 010538 16 DYGYPNAPKSIDQIRATEFKRL---------------ENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISL 80 (508)
Q Consensus 16 ~~~~~~~~~~~~~~r~~~f~~~---------------~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 80 (508)
++++.. .++.+|+ +|-.. +.+.|||..++.+.+|+.+.+.+ ++-++.|..-...++..|.
T Consensus 32 ~Ld~~d---~l~~~Rd-~F~iPk~~~lp~~d~sLv~~d~~~iYlcGNSLGLmPK~t~~~~-~~eLDkWak~av~gH~~Gk 106 (465)
T KOG3846|consen 32 ELDGSD---YLESLRD-EFNIPKFKSLPDADPSLVSDDKPVIYLCGNSLGLMPKSTRNSI-NAELDKWAKCAVEGHFKGK 106 (465)
T ss_pred hcCcch---hHHHHHH-HhcCCccccCCCCCccccCCCCCeEEEeccccccCchhhHhHH-HHHHHHHHhhhhhcccccc
Confidence 345555 6778888 76332 16799999999999888876554 3333332111111111111
Q ss_pred -hhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCC---CCeEEEecccccchHHHHH-HHHhcCCeE
Q 010538 81 -ATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSH---QSSYMYTMENHNSVLGIRE-YALSQGAAA 155 (508)
Q Consensus 81 -~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~---g~~vl~~~~~h~s~~~~~~-~~~~~G~~v 155 (508)
.+...-+-....++.++|++.+ +|.+.++-|..+..++.++ .+| .-+|+.....+||-...++ .++-.|..+
T Consensus 107 vPW~~~De~il~l~~~iVGA~e~--EvavmNsLTvNlh~Ll~sF-yKPTekR~KILlE~kaFPSDhYAiesQ~~lhG~~~ 183 (465)
T KOG3846|consen 107 VPWVSIDEPILPLLAPIVGAQEN--EVAVMNSLTVNLHSLLISF-YKPTEKRFKILLEKKAFPSDHYAIESQCKLHGISP 183 (465)
T ss_pred cceeecchhhhhhhhhhccCCch--hhhhHhhhhhHHHHHHHHh-cCCcchhhhhhhccCCCCchHHHHHhhhhhcCCCh
Confidence 1223344567889999999988 8999999999999888888 333 4578888888998655444 455566553
Q ss_pred E----EE-ccCCcc--CccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHc
Q 010538 156 F----AI-DVEEAV--DNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKK 228 (508)
Q Consensus 156 ~----~v-~~~~~~--~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~ 228 (508)
. .+ |.++.. +.+++ ++.++ + .++...+|+++-++..||..+++.+|...-+
T Consensus 184 e~sm~~iePREGEetlRteDI-------------Ld~IE------k---ngDeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq 241 (465)
T KOG3846|consen 184 ENSMIQIEPREGEETLRTEDI-------------LDTIE------K---NGDEIALVCFSGVQYYTGQYFDIGAITFAGQ 241 (465)
T ss_pred HHheEEecccccccchhHHHH-------------HHHHH------h---cCCeEEEEEeecceeecccccchhhhhhccc
Confidence 2 23 223322 22222 34444 1 2678899999999999999999999997777
Q ss_pred CCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEecccccc-CCCcceEEEEechhHhhhccccccCceEE
Q 010538 229 NPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFG-YPTGLGALIMRNDAAKLLKNTYFSGGTVA 307 (508)
Q Consensus 229 ~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g-~P~G~G~l~~~~~~~~~l~~~~~g~~~~~ 307 (508)
. .|++|=.|-+|++|-.|+-+..|++||.|.+.+|.++ ||+|+|.+++..+......|...||....
T Consensus 242 ~------------kgc~VGfDLAHAvgNVpL~LHdWgVDFACWCSYKYlnaGaGgIgGlFvHekh~~~~~prl~GWwgh~ 309 (465)
T KOG3846|consen 242 F------------KGCLVGFDLAHAVGNVPLQLHDWGVDFACWCSYKYLNAGAGGIGGLFVHEKHTKESLPRLAGWWGHD 309 (465)
T ss_pred C------------CCcEechhhhhhhcCCceEEeecCCceEEEeeecccccCCCccceeeeehhhhcchhhHHhhhccCC
Confidence 6 7999999999999999999999999999999999544 68889999999999888889888875432
Q ss_pred ecc-cchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCC-----CCceE
Q 010538 308 ASI-ADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHEN-----GADVC 381 (508)
Q Consensus 308 ~~~-~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~-----~~~~~ 381 (508)
.+. -.++-.....++.-+|+...|++...+++..+++...+..+.++++|..-|+.|+...++...+.. .++-+
T Consensus 310 ~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F~q~~~~~lRkrS~lLTgYleyL~k~~~g~~~~~rt~Kl~~ 389 (465)
T KOG3846|consen 310 PSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELFAQFNINELRKRSLLLTGYLEYLLKASKGYKHPLRTEKLFF 389 (465)
T ss_pred cchhhhhccccccCccccccccCCCcHhHHHHHHhhHHHHHHhhHHHHhhhhhhHHhHHHHHHHHhcccCchhhhcceeE
Confidence 221 011111123356778888999999999999999999998899999999999999888877654421 34567
Q ss_pred EEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccC
Q 010538 382 TIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCW 461 (508)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 461 (508)
.+++|... ++++..+++.+.... .++.+.|.++|++...
T Consensus 390 ~IiTP~~~----~erGcQLsl~Fssp~------~~vfqeL~krGv~~Dk------------------------------- 428 (465)
T KOG3846|consen 390 TIITPTST----DERGCQLSLYFSSPT------PKVFQELHKRGVIGDK------------------------------- 428 (465)
T ss_pred EEeCCccc----ccccceEEEEeCCCc------hHHHHHHHHcCeeccc-------------------------------
Confidence 88888765 577999998886432 2489999999998432
Q ss_pred CCccccCCCCCceEEEec-CCCCCHHHHHHHHHhhhhhhhhh
Q 010538 462 DDNDIIHGKPTGAIRVSF-GYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 462 ~~~~~~~~~~~~~iRis~-~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
+.++.||+++ +.|||..||.+++.++.+.+.-+
T Consensus 429 --------R~PNvIRvAPvpLYN~f~Dvy~f~n~L~e~~d~~ 462 (465)
T KOG3846|consen 429 --------RRPNVIRVAPVPLYNTFSDVYIFVNALNEAMDKL 462 (465)
T ss_pred --------cCCCceEeecchhhccHHHHHHHHHHHHHHHHHh
Confidence 2478999995 58999999999999998877654
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-23 Score=212.92 Aligned_cols=323 Identities=13% Similarity=0.077 Sum_probs=216.4
Q ss_pred CCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHH
Q 010538 40 GTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKL 118 (508)
Q Consensus 40 ~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~ 118 (508)
+.+.|+.+.... +++.+.+++.+.. .... .|+ . . ...++|+++|++++++++ +|++|+|+++++.+
T Consensus 20 ~~~~l~~~~~~~~~p~~~~~a~~~~~-~~~~-----~Y~-~---~-~~~~lr~~ia~~~~~~~~--~i~it~Ga~~~l~~ 86 (354)
T PRK06358 20 MILDFSANINPLGVPESLKQAITENL-DKLV-----EYP-D---P-DYLELRKRIASFEQLDLE--NVILGNGATELIFN 86 (354)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHH-Hhhh-----cCC-C---c-cHHHHHHHHHHHhCCChh--hEEECCCHHHHHHH
Confidence 357777654332 3556666554432 2111 121 1 1 146789999999999998 89999999999999
Q ss_pred HHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCC
Q 010538 119 VGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPA 198 (508)
Q Consensus 119 ~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~ 198 (508)
++.++ .+ +.|++....|+ .+...++..|++++.+|.+.+..+ ..| +++. +.+
T Consensus 87 ~~~~~--~~-~~v~i~~P~y~---~~~~~~~~~g~~~~~~~~~~~~~~-------------~~d-~~~~--~~~------ 138 (354)
T PRK06358 87 IVKVT--KP-KKVLILAPTFA---EYERALKAFDAEIEYAELTEETNF-------------AAN-EIVL--EEI------ 138 (354)
T ss_pred HHHHh--CC-CcEEEecCChH---HHHHHHHHcCCeeEEEeCccccCC-------------Ccc-HHHH--Hhh------
Confidence 99987 33 46776664444 444555667999999998643322 014 3333 222
Q ss_pred CCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC---CCCC----CCCCCCcEEEE
Q 010538 199 GDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT---QPPD----LSKYPVDFVVM 271 (508)
Q Consensus 199 ~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~---~~~d----~~~~~~D~~~~ 271 (508)
.++++++++++++||||.+++.+++.++++ +|+++|+++|+|+++..-. .+.. +...+--+++.
T Consensus 139 ~~~~~~v~~~~P~NPtG~~~~~~~~~~l~~---------~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~ 209 (354)
T PRK06358 139 KEEIDLVFLCNPNNPTGQLISKEEMKKILD---------KCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIR 209 (354)
T ss_pred ccCCCEEEEeCCCCCCCCccCHHHHHHHHH---------HHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEE
Confidence 245799999999999999999887777766 4566999999999975311 1111 11112338889
Q ss_pred eccccccCCCc--ceEEEEe-chhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHh
Q 010538 272 SFYKIFGYPTG--LGALIMR-NDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINS 348 (508)
Q Consensus 272 S~~K~~g~P~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~ 348 (508)
|++|.|| .+| +||++++ +.+++.+..... ..+.+.....++..+++. .
T Consensus 210 S~SK~~g-l~G~RiG~lv~~~~~~~~~~~~~~~--------------------------~~~~~~~~q~~~~~~l~~--~ 260 (354)
T PRK06358 210 AFTKFFA-IPGLRLGYGLTSNKNLAEKLLQMRE--------------------------PWSINTFADLAGQTLLDD--K 260 (354)
T ss_pred echhhcc-CcchhheeeecCCHHHHHHHHHhCC--------------------------CCcchHHHHHHHHHHhcc--H
Confidence 9999998 547 8999985 455555543311 122333344444444432 1
Q ss_pred cChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCee
Q 010538 349 LTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQL 428 (508)
Q Consensus 349 ~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v 428 (508)
..+++..+.+++.++++.+.|+++ +++.+..+. ++++++++++. .++.+.|.++||.+
T Consensus 261 ~~~~~~~~~~~~~r~~l~~~L~~~------~~~~~~~~~---------g~f~~~~~~~~-------~~~~~~l~~~gI~v 318 (354)
T PRK06358 261 EYIKKTIQWIKEEKDFLYNGLSEF------KGIKVYKPS---------VNFIFFKLEKP-------IDLRKELLKKGILI 318 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC------CCcEEcCCc---------ceEEEEEcCch-------HHHHHHHHHCCeEE
Confidence 124667788888899999999876 366666442 67888888642 24778888899999
Q ss_pred ccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 429 RTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 429 ~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
++|..+.. ...+++||+++ +.++.+++++++.+++
T Consensus 319 ~~~~~f~~---------------------------------~~~~~iRls~~---~~~~~~~l~~~l~~~~ 353 (354)
T PRK06358 319 RSCSNYRG---------------------------------LDENYYRVAVK---SREDNKKLLKALEVIL 353 (354)
T ss_pred EECCCCCC---------------------------------CCCCEEEEEeC---CHHHHHHHHHHHHHHh
Confidence 99875521 12578999998 9999999999998875
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=220.38 Aligned_cols=339 Identities=13% Similarity=0.029 Sum_probs=219.1
Q ss_pred CCCeeeeCCCCC-----CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCC------CCCCceEE
Q 010538 39 NGTVYLDHAGAT-----LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA------SMKDYKCI 107 (508)
Q Consensus 39 ~~~iyld~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~------~~~~~~i~ 107 (508)
.+++.|..+-.+ ++++.+.+++.+.+ ..... ..|.. ......+|+.++++++. +++ +|+
T Consensus 31 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l-~~~~~---~~Y~~----~~g~~~lr~~ia~~l~~~~~~~~~~~--~ii 100 (403)
T TIGR01265 31 KPIIPLSHGDPSVFGNLRTDPEAEEAVKDAL-RSGKF---NGYAP----SVGALAAREAVAEYLSSDLPGKLTAD--DVV 100 (403)
T ss_pred CCeEEeCCCCCCccCCCCCCHHHHHHHHHHH-hcCCC---CCCCC----CCCCHHHHHHHHHHHHhhcCCCCCHH--HEE
Confidence 468888887543 55666666654433 21111 11211 12256678888888874 556 899
Q ss_pred EcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc--cCccccccccccccccccchhh
Q 010538 108 FTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA--VDNDGLSESLVTSTKISLLPIQ 185 (508)
Q Consensus 108 ~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~--~~~~~l~~~~~~~~~~~~d~~~ 185 (508)
+|+|+|+|+.+++.++ ..+|++|+++...|+.+ ...++..|++++.++.+.+ ..+ |++.
T Consensus 101 ~t~G~t~al~~~~~~l-~~~gd~Vlv~~p~y~~~---~~~~~~~g~~~~~~~~~~~~~~~~---------------d~~~ 161 (403)
T TIGR01265 101 LTSGCSQAIEICIEAL-ANPGANILVPRPGFPLY---DTRAAFSGLEVRLYDLLPEKDWEI---------------DLDG 161 (403)
T ss_pred EecChHHHHHHHHHHh-CCCCCEEEEeCCCchhH---HHHHHHcCCEEEEecCCcccCCcc---------------CHHH
Confidence 9999999999999998 47899999888666544 4455667999999887532 233 6788
Q ss_pred hhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC----CCCCC
Q 010538 186 RRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT----QPPDL 261 (508)
Q Consensus 186 l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~----~~~d~ 261 (508)
++ +++ .++++++++++++||||.++|.+++.++++ +|+++|+++|+|++++.-. ....+
T Consensus 162 l~--~~~------~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~---------~a~~~~~~ii~De~y~~~~~~~~~~~~~ 224 (403)
T TIGR01265 162 LE--ALA------DEKTVAIVVINPSNPCGSVFSRDHLQKIAE---------VARKLGIPIIADEIYGHMVFGDAPFIPM 224 (403)
T ss_pred HH--HHh------CcCccEEEEecCCCCCCCCCCHHHHHHHHH---------HHHHCCCEEEEEccccccccCCCCccch
Confidence 88 444 457899999999999999999555555544 3444999999999986311 11222
Q ss_pred CCCC---CcEEEEeccccccCCCc--ceEEEEec--h-----hHhhhccccccCceEEecccchhhhhhccCccccccCC
Q 010538 262 SKYP---VDFVVMSFYKIFGYPTG--LGALIMRN--D-----AAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDG 329 (508)
Q Consensus 262 ~~~~---~D~~~~S~~K~~g~P~G--~G~l~~~~--~-----~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 329 (508)
..+. .-+++.|++|.|+.| | +||+++++ + +++.+.... . . ..
T Consensus 225 ~~~~~~~~vi~~~S~SK~~~~p-GlRiG~~v~~~~~~~~~~~~~~~~~~~~-----------------------~-~-~~ 278 (403)
T TIGR01265 225 ASFASIVPVLSLGGISKRWVVP-GWRLGWIIIHDPHGIFRDTVLQGLKNLL-----------------------Q-R-IL 278 (403)
T ss_pred hhhccCCcEEEEeecccccCCC-cceEEEEEEeCchhhhHHHHHHHHHHHh-----------------------h-h-hc
Confidence 2221 237788999988746 6 89999853 2 222121110 0 0 01
Q ss_pred CCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCC-
Q 010538 330 TASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPD- 408 (508)
Q Consensus 330 t~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 408 (508)
.++.....++..+++...+..+++..+++.+.++++.+.|+.. +++++..|.+ +++++++++...
T Consensus 279 ~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------~~~~~~~p~~--------g~f~~~~~~~~~~ 344 (403)
T TIGR01265 279 GPATIVQGALPDILENTPQEFFDGKISVLKSNAELCYEELKDI------PGLVCPKPEG--------AMYLMVKLELELF 344 (403)
T ss_pred CCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcC------CCceecCCCc--------eeEEEEecccccc
Confidence 2233444444445542112235677788888889999999876 3566554543 789999886421
Q ss_pred CCccCHHHHHHH-HhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHH
Q 010538 409 GSWFGYREVEKL-ASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFED 487 (508)
Q Consensus 409 ~~~~~~~~l~~~-L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ee 487 (508)
....+..++.+. ++++||.+.+|..|.. .+++|||++. ..++
T Consensus 345 ~~~~~~~~~~~~l~~~~gv~v~pg~~f~~-----------------------------------~~~iRis~~~--~~~~ 387 (403)
T TIGR01265 345 PEIKDDVDFCEKLVREESVICLPGSAFGL-----------------------------------PNWVRITITV--PESM 387 (403)
T ss_pred CCCCCHHHHHHHHHHhCCEEEeCccccCC-----------------------------------CCeEEEEecC--CHHH
Confidence 001133456565 5788999999875421 5789999994 5777
Q ss_pred HHHHHHhhhhhhh
Q 010538 488 AKVNRCSSFDFVN 500 (508)
Q Consensus 488 v~~l~~~~~~~~~ 500 (508)
++..++.|+++++
T Consensus 388 l~~~l~~l~~~~~ 400 (403)
T TIGR01265 388 LEEACSRIKEFCE 400 (403)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776653
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=217.88 Aligned_cols=342 Identities=13% Similarity=0.058 Sum_probs=225.9
Q ss_pred CCCeeeeCCCCCCC-CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCC-ceEEEcCChHHHH
Q 010538 39 NGTVYLDHAGATLY-SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKD-YKCIFTSGATAAL 116 (508)
Q Consensus 39 ~~~iyld~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~-~~i~~t~g~t~al 116 (508)
.+.+.|..+..... ++.+.+++.+ ..... ...|........+.+++.+.+.++++.+.+. .+|++|+|+++|+
T Consensus 30 ~~~i~l~~g~~~~~~~~~~~~~~~~-~~~~~----~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al 104 (386)
T PRK09082 30 HGAINLSQGFPDFDGPPYLVEALAY-AMAAG----HNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEAL 104 (386)
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHH-HHHcC----CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHH
Confidence 56788887654433 4555555433 32211 1122222223456667777777777874321 1699999999999
Q ss_pred HHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC-ccCccccccccccccccccchhhhhcCCCCCCC
Q 010538 117 KLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE-AVDNDGLSESLVTSTKISLLPIQRRKGASFPER 195 (508)
Q Consensus 117 ~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~ 195 (508)
.+++.++ ..+|++|+++...|+++..+.+. .|.++..+|.+. ...+ |+++++ +.+
T Consensus 105 ~~~~~~~-~~~gd~Vli~~p~y~~~~~~~~~---~g~~~~~~~~~~~~~~~---------------d~~~l~--~~~--- 160 (386)
T PRK09082 105 FAAILAL-VRPGDEVIVFDPSYDSYAPAIEL---AGGRAVRVALQPPDFRV---------------DWQRFA--AAI--- 160 (386)
T ss_pred HHHHHHH-cCCCCEEEEeCCCchhhHHHHHH---cCCEEEEEecCcccccC---------------CHHHHH--Hhc---
Confidence 9999998 67899999999888877655543 599999999864 2233 678888 554
Q ss_pred CCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCC----CCCCCCC---C-CCCc
Q 010538 196 DPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCV----TQPPDLS---K-YPVD 267 (508)
Q Consensus 196 ~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g----~~~~d~~---~-~~~D 267 (508)
.+++++|++++++||||.+++.+++.++++ +|+++|+++|+|.+++.. .....+. . .+..
T Consensus 161 ---~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~---------~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~ 228 (386)
T PRK09082 161 ---SPRTRLIILNTPHNPSGTVWSAADMRALWQ---------LIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERA 228 (386)
T ss_pred ---CccceEEEEeCCCCCCCcCCCHHHHHHHHH---------HHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcE
Confidence 457899999999999999988777666655 455699999999998531 1122222 1 2356
Q ss_pred EEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHH
Q 010538 268 FVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNL 345 (508)
Q Consensus 268 ~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~ 345 (508)
+++.|++|.|| .+| +||+++++++++.+..... ....+.+.....++...++.
T Consensus 229 i~~~S~SK~~~-~~G~RiG~iv~~~~l~~~~~~~~~------------------------~~~~~~~~~~q~~~~~~l~~ 283 (386)
T PRK09082 229 FVVSSFGKTYH-VTGWKVGYCVAPAALSAEFRKVHQ------------------------YNTFTVNTPAQLALADYLRA 283 (386)
T ss_pred EEEeechhhcc-chhhhhhhhhCCHHHHHHHHHHHh------------------------hhcCCCChHHHHHHHHHHhC
Confidence 88999999998 447 8999999888776654310 01112333333333334331
Q ss_pred HHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHH-HhhC
Q 010538 346 INSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKL-ASLS 424 (508)
Q Consensus 346 ~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~-L~~~ 424 (508)
.+..++++++.+.+.++++.+.|++. ++++..+.+ +.++++++++.++ ++..++.+. ++++
T Consensus 284 -~~~~~~~~~~~~~~~~~~~~~~L~~~-------~~~~~~~~g--------~~~~~~~~~~~~~--~~~~~~~~~l~~~~ 345 (386)
T PRK09082 284 -EPEHYLELPAFYQAKRDRFRAALANS-------RFKLLPCEG--------TYFQLVDYSAISD--LDDVEFCQWLTREH 345 (386)
T ss_pred -ChHHHHHHHHHHHHHHHHHHHHHHhC-------CCcccCCCe--------eEEEEEeccccCC--CCHHHHHHHHHHhC
Confidence 12235667778889999999999875 566554432 6778888864211 234457665 4788
Q ss_pred CCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhh
Q 010538 425 GIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFD 497 (508)
Q Consensus 425 gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~ 497 (508)
||.+.+|..|.... ...+++|+|++. +.++++..++.|++
T Consensus 346 ~v~v~pg~~f~~~~-------------------------------~~~~~~Ri~~~~--~~~~l~~~~~rl~~ 385 (386)
T PRK09082 346 GVAAIPLSVFYADP-------------------------------FPHRLVRLCFAK--QEETLDAAAERLCQ 385 (386)
T ss_pred CEEEeCcHHhCCCC-------------------------------CCCCEEEEEecC--CHHHHHHHHHHHhh
Confidence 99999987442210 125789999985 68888888887764
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-23 Score=218.41 Aligned_cols=346 Identities=13% Similarity=0.039 Sum_probs=226.8
Q ss_pred CCCeeeeCCCCCCC-CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCC--CCCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGATLY-SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA--SMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~--~~~~~~i~~t~g~t~a 115 (508)
++.+.|..+..... ++.+.+++.+ ..... ...|........+.+.+.+.+++.+|. +++ +|++|+|+++|
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~~~~-~~~~~----~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~--~i~~t~G~~~a 105 (402)
T PRK06107 33 RSIVDLTVGEPDFDTPDHIKQAAVA-AIERG----ETKYTLVNGTPALRKAIIAKLERRNGLHYADN--EITVGGGAKQA 105 (402)
T ss_pred CCEEEcCCCCCCCCCCHHHHHHHHH-HHHcC----CCCCCCCCCCHHHHHHHHHHHHHhcCCCCChh--hEEEeCCHHHH
Confidence 56788887765544 4444444433 33211 111222122345566777777777776 566 89999999999
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPER 195 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~ 195 (508)
+.+++.++ ..+|+.|++++..|+++..... ..+..++.++.+.+... ..|++.++ +.+
T Consensus 106 l~~~~~~~-~~~gd~vl~~~p~y~~y~~~~~---~~~~~~~~v~~~~~~~~-------------~~~~~~l~--~~~--- 163 (402)
T PRK06107 106 IFLALMAT-LEAGDEVIIPAPYWVSYPDMVL---ANDGTPVIVACPEEQGF-------------KLTPEALE--AAI--- 163 (402)
T ss_pred HHHHHHHh-cCCCCEEEEecCCCcCHHHHHH---HcCCEEEEecCCcccCC-------------CCCHHHHH--hhc---
Confidence 99999887 6889999999877777654433 34677777877532221 11578888 554
Q ss_pred CCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC-CeEEEEeccccC----CCCCCCCCCC-----C
Q 010538 196 DPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG-RWMVLIDAAKGC----VTQPPDLSKY-----P 265 (508)
Q Consensus 196 ~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~-g~~vivD~a~~~----g~~~~d~~~~-----~ 265 (508)
.++++++++++++||||.++|.+++.++++ +|+++ ++++|+|.+++. +.....+... +
T Consensus 164 ---~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~---------~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~ 231 (402)
T PRK06107 164 ---TPRTRWLILNAPSNPTGAVYSRAELRALAD---------VLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRD 231 (402)
T ss_pred ---CcCceEEEEECCCCCCCcCcCHHHHHHHHH---------HHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccC
Confidence 357899999999999999999888877776 45557 999999998852 1111222111 2
Q ss_pred CcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHH
Q 010538 266 VDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGF 343 (508)
Q Consensus 266 ~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al 343 (508)
.-+++.|++|.|+ ++| +||+++++++++.+..... ....+++.....++..++
T Consensus 232 ~vi~~~S~SK~~~-~pGlRiG~~~~~~~~~~~~~~~~~------------------------~~~~~~s~~~q~~~~~~l 286 (402)
T PRK06107 232 RVLVTNGVSKTYA-MTGWRIGYAAGPADLIAAINKLQS------------------------QSSSCPSSISQAAAAAAL 286 (402)
T ss_pred CEEEEeccchhhc-CcccceeeeecCHHHHHHHHHHHH------------------------hcccCCChHHHHHHHHHh
Confidence 3577889999998 557 7999999988776654311 011223444444444444
Q ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCC------CCCc-cCHHH
Q 010538 344 NLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRP------DGSW-FGYRE 416 (508)
Q Consensus 344 ~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~-~~~~~ 416 (508)
+-- +..++..++++.+.++.+.+.|++. +++.+..+.+ +.++|+++++. .+.. .+..+
T Consensus 287 ~~~-~~~~~~~~~~~~~~~~~~~~~L~~~------~g~~~~~p~g--------g~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (402)
T PRK06107 287 NGD-QSFVTESVAVYKQRRDYALALLNAI------PGLSCLVPDG--------AFYLYVNCAGLIGKTTPEGKVLETDQD 351 (402)
T ss_pred cCC-hHHHHHHHHHHHHHHHHHHHHHhcC------CCCcccCCCc--------ceEEeeecccccccccccccCCCCHHH
Confidence 311 1225667778888888899999876 3566654443 67788877421 1100 12233
Q ss_pred H-HHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhh
Q 010538 417 V-EKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSS 495 (508)
Q Consensus 417 l-~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~ 495 (508)
+ .++++++||.+.+|..|.. .+++|+|++. +.|++++.++.|
T Consensus 352 ~~~~l~~~~gv~v~pg~~Fg~-----------------------------------~~~iRis~~~--~~e~l~~~l~~l 394 (402)
T PRK06107 352 VVLYLLDSAGVAVVQGTAYGL-----------------------------------SPYFRLSIAT--SLETLEEACARI 394 (402)
T ss_pred HHHHHHHhCCEEEeCccccCC-----------------------------------CCeEEEEeCC--CHHHHHHHHHHH
Confidence 4 4566789999999875421 4789999994 799999999998
Q ss_pred hhhhhhh
Q 010538 496 FDFVNFS 502 (508)
Q Consensus 496 ~~~~~~~ 502 (508)
+++++.+
T Consensus 395 ~~~l~~~ 401 (402)
T PRK06107 395 ERAVAAL 401 (402)
T ss_pred HHHHHhc
Confidence 8877543
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-23 Score=216.21 Aligned_cols=339 Identities=12% Similarity=0.045 Sum_probs=215.4
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCC-CccchhhhhhHHHHHHHHHHHHHc----CC--CCCCceEEEcC
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPH-SQSDISLATCDIVRAAREQVLDYF----NA--SMKDYKCIFTS 110 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~la~~~----~~--~~~~~~i~~t~ 110 (508)
++.+.|+.+.... +++...+++.+.. . ++. ..|.... ....+|+.+|+++ |. ++++ +|++|+
T Consensus 30 ~~~i~l~~~~p~~~~~~~~~~~~~~~~-~----~~~~~~Y~~~~----G~~~lr~aia~~~~~~~g~~~~~~~-~I~it~ 99 (405)
T PRK09148 30 ADIIDLGMGNPDLPTPQHIVDKLCETA-Q----DPRTHRYSASK----GIPGLRRAQAAYYARRFGVKLNPDT-QVVATL 99 (405)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHH-c----CcccCCCCCCC----CCHHHHHHHHHHHHHHhCCCCCCCC-cEEEcC
Confidence 5678888765543 3455656544322 1 111 1222211 1344556666555 53 4431 599999
Q ss_pred ChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCc-cccccccccccccccchhhhhcC
Q 010538 111 GATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDN-DGLSESLVTSTKISLLPIQRRKG 189 (508)
Q Consensus 111 g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~-~~l~~~~~~~~~~~~d~~~l~~~ 189 (508)
|+++++.+++.++ ..+|+.|+++...|+.+.... +..|+++..+|++.++.. + ++++..
T Consensus 100 G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~---~~~g~~v~~v~~~~~~~~~~--------------~l~~~~-- 159 (405)
T PRK09148 100 GSKEGFANMAQAI-TAPGDVILCPNPSYPIHAFGF---IMAGGVIRSVPAEPDEEFFP--------------ALERAV-- 159 (405)
T ss_pred ChHHHHHHHHHHh-cCCCCEEEEcCCCCcccHHHH---HhcCCEEEEEeCCCCCCCcc--------------CHHHHH--
Confidence 9999999999998 678999999998887765444 346999999998654322 1 223322
Q ss_pred CCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCC---C-CCCCCCCC-
Q 010538 190 ASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCV---T-QPPDLSKY- 264 (508)
Q Consensus 190 ~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g---~-~~~d~~~~- 264 (508)
....++++++++++++||||.++|.+++.++++ +|+++|++||+|+++..- . ....+...
T Consensus 160 ------~~~~~~~~~v~l~~P~NPtG~~~s~~~l~~l~~---------~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~ 224 (405)
T PRK09148 160 ------RHSIPKPIALIVNYPSNPTAYVADLDFYKDVVA---------FAKKHDIIILSDLAYSEIYFDGNPPPSVLQVP 224 (405)
T ss_pred ------hhccccceEEEEeCCCCCCCcCCCHHHHHHHHH---------HHHHcCeEEEEeccchhhhcCCCCCCChhhCC
Confidence 112467899999999999999999977666655 455599999999998631 1 11222211
Q ss_pred ---CCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHH
Q 010538 265 ---PVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASI 339 (508)
Q Consensus 265 ---~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l 339 (508)
+..+++.|++|.+| .+| +||+++++++++.+..... ....+.+.+...++
T Consensus 225 ~~~~~~i~~~SfSK~~~-~pGlR~G~~v~~~~~i~~l~~~~~------------------------~~~~~~~~~~q~~~ 279 (405)
T PRK09148 225 GAKDVTVEFTSMSKTFS-MAGWRMGFAVGNERLIAALTRVKS------------------------YLDYGAFTPIQVAA 279 (405)
T ss_pred CccCcEEEEeccccccC-CcchheeeeeCCHHHHHHHHHHHH------------------------HhccCCChHHHHHH
Confidence 23467899999998 557 8999999888776654310 00111222333333
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHH
Q 010538 340 RHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEK 419 (508)
Q Consensus 340 ~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~ 419 (508)
..+++.- +..++..++++++.++++.+.|++. ++.+..|.+ +.++|+++++.... ++..++.+
T Consensus 280 ~~~L~~~-~~~~~~~~~~~~~~r~~l~~~L~~~-------~~~~~~p~~--------g~f~~~~l~~~~~~-~~~~~~~~ 342 (405)
T PRK09148 280 TAALNGP-QDCIAEMRELYKKRRDVLVESFGRA-------GWDIPPPAA--------SMFAWAPIPEAFRH-LGSLEFSK 342 (405)
T ss_pred HHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHc-------CCccCCCCe--------eEEEEEECCCccCC-CCHHHHHH
Confidence 3344311 2235777888899999999999875 455444433 67899988642110 12234555
Q ss_pred H-HhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 420 L-ASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 420 ~-L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
. ++++||.+.+|..+... ..+++||++. .+.+++...++.+.++
T Consensus 343 ~ll~~~gV~v~pg~~f~~~---------------------------------~~~~~Ri~~~--~~~~~l~~al~~l~~~ 387 (405)
T PRK09148 343 LLVEKADVAVAPGVGFGEH---------------------------------GDGYVRIALV--ENEQRIRQAARNIKRF 387 (405)
T ss_pred HHHHhCCEEEeCchhhCCC---------------------------------CCCeEEEEec--CCHHHHHHHHHHHHHH
Confidence 5 56789999998754211 1578999997 4667777776666655
Q ss_pred h
Q 010538 499 V 499 (508)
Q Consensus 499 ~ 499 (508)
+
T Consensus 388 l 388 (405)
T PRK09148 388 L 388 (405)
T ss_pred H
Confidence 4
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-23 Score=217.32 Aligned_cols=342 Identities=13% Similarity=0.037 Sum_probs=216.3
Q ss_pred CCCeeeeCCCCC----CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc----C--CCCCCceEEE
Q 010538 39 NGTVYLDHAGAT----LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF----N--ASMKDYKCIF 108 (508)
Q Consensus 39 ~~~iyld~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~--~~~~~~~i~~ 108 (508)
.+.+.|..+-.+ ++++.+.+++.+.. ... ...|... ....++|+.+++++ | ++++ +|++
T Consensus 30 ~~~i~l~~g~p~~~~~~p~~~~~~~~~~~~-~~~----~~~Y~~~----~g~~~lr~~ia~~~~~~~g~~~~~~--~i~i 98 (398)
T PRK08363 30 IKVIRLNIGDPVKFDFQPPEHMKEAYCRAI-KEG----HNYYGPS----EGLPELREAIVKREKRKNGVDITPD--DVRV 98 (398)
T ss_pred CCeEEEeCCCCCcCCCCCCHHHHHHHHHHH-HcC----CCCCCCC----CCcHHHHHHHHHHHHHhcCCCCChh--hEEE
Confidence 467888877652 35666666554433 211 1112111 12455677777765 3 5777 8999
Q ss_pred cCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEE-ccCCcc-Cccccccccccccccccchhhh
Q 010538 109 TSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAI-DVEEAV-DNDGLSESLVTSTKISLLPIQR 186 (508)
Q Consensus 109 t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v-~~~~~~-~~~~l~~~~~~~~~~~~d~~~l 186 (508)
|+|+++|+.+++.++ .++|+.|+++...|+.+... ++..|.+++.+ +.+.++ .+ |++.+
T Consensus 99 t~G~~~al~~~~~~~-~~~gd~Vl~~~p~y~~~~~~---~~~~g~~~v~~~~~~~~~~~~---------------d~~~l 159 (398)
T PRK08363 99 TAAVTEALQLIFGAL-LDPGDEILIPGPSYPPYTGL---VKFYGGVPVEYRTIEEEGWQP---------------DIDDI 159 (398)
T ss_pred eCCHHHHHHHHHHHh-CCCCCEEEEcCCCCcchHHH---HHHcCCEEEEeccccccCCcC---------------CHHHH
Confidence 999999999999998 78899999998777766544 44568888777 444322 23 57788
Q ss_pred hcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC---CCCC---
Q 010538 187 RKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT---QPPD--- 260 (508)
Q Consensus 187 ~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~---~~~d--- 260 (508)
+ +++ .+++++|++++++||||.+++.+++.++++ +|+++|+++|+|++++.-. .+..
T Consensus 160 ~--~~~------~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~---------~a~~~~~~li~Deay~~~~~~~~~~~~~~ 222 (398)
T PRK08363 160 R--KKI------TEKTKAIAVINPNNPTGALYEKKTLKEILD---------IAGEHDLPVISDEIYDLMTYEGKHVSPGS 222 (398)
T ss_pred H--hhC------CcceEEEEEECCCCCCCcCcCHHHHHHHHH---------HHHHcCeEEEEhhhhhhhccCCcccCHHH
Confidence 7 444 457899999999999999999555544443 3334999999999986321 1111
Q ss_pred CCCCCCcEEEEeccccccCCCc--ceEEEE--echhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHH
Q 010538 261 LSKYPVDFVVMSFYKIFGYPTG--LGALIM--RNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSI 336 (508)
Q Consensus 261 ~~~~~~D~~~~S~~K~~g~P~G--~G~l~~--~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~ 336 (508)
+....--+++.|++|+|+.| | +||+++ +++.++.+....... . ... .+.+....
T Consensus 223 ~~~~~~vi~~~SfSK~~~~~-GlRiG~~~~~~~~~~~~~l~~~~~~~-------------------~-~~~-~~~s~~~q 280 (398)
T PRK08363 223 LTKDVPVIVMNGLSKVYFAT-GWRLGYIYFVDPEGKLAEVREAIDKL-------------------A-RIR-LCPNTPAQ 280 (398)
T ss_pred cCcCCcEEEEecchhccCCc-cceEEEEEEeCcHHHHHHHHHHHHHH-------------------h-ccc-ccCChHHH
Confidence 11111236788999987745 6 899998 555555444331100 0 000 12233334
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHH
Q 010538 337 ASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYRE 416 (508)
Q Consensus 337 ~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 416 (508)
.++..++... ...+++..+++++.++++.+.|+++ +++.+..|.+ +.++++++++.... -+...
T Consensus 281 ~~~~~~l~~~-~~~l~~~~~~~~~~~~~l~~~L~~~------~~~~~~~p~g--------~~~~~~~l~~~~~~-~~~~~ 344 (398)
T PRK08363 281 FAAIAGLTGP-MDYLEEYMKKLKERRDYIYKRLNEI------PGISTTKPQG--------AFYIFPRIEEGPWK-DDKEF 344 (398)
T ss_pred HHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHhcC------CCCEecCCCe--------EEEEEEEeccCCCC-CHHHH
Confidence 4444444321 1235677888899999999999876 3566654432 45666677642100 01122
Q ss_pred HHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhh
Q 010538 417 VEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 417 l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~ 496 (508)
+.+.|.++||.+++|..+... .++++|+|++ .+.+++++.++.|+
T Consensus 345 ~~~~l~~~gV~v~~g~~f~~~---------------------------------~~~~iRis~~--~~~~~l~~~l~~l~ 389 (398)
T PRK08363 345 VLDVLHEAHVLFVHGSGFGEY---------------------------------GAGHFRLVFL--PPVEILEEAMDRFE 389 (398)
T ss_pred HHHHHHhCCEEEeCchhhCCC---------------------------------CCCeEEEEec--CCHHHHHHHHHHHH
Confidence 456678999999998755321 2578999996 47899999998888
Q ss_pred hhhh
Q 010538 497 DFVN 500 (508)
Q Consensus 497 ~~~~ 500 (508)
+++.
T Consensus 390 ~~~~ 393 (398)
T PRK08363 390 EFMR 393 (398)
T ss_pred HHHH
Confidence 7654
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-23 Score=214.35 Aligned_cols=335 Identities=14% Similarity=0.122 Sum_probs=218.5
Q ss_pred CCCeeeeCCCCCCC-CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc----CC--CCCCceEEEcCC
Q 010538 39 NGTVYLDHAGATLY-SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF----NA--SMKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~--~~~~~~i~~t~g 111 (508)
++.+.|..+....+ ++.+.+++.+ .... ....|.... ....+|+.+++++ |. +++. +|++|+|
T Consensus 28 ~~~i~l~~~~p~~~~~~~~~~a~~~-~~~~----~~~~Y~~~~----g~~~lr~~ia~~l~~~~g~~~~~~~-~I~~t~G 97 (387)
T PRK07683 28 DNLISLTIGQPDFPTPSHVKEAAKR-AITE----NYTSYTHNA----GLLELRKAACNFVKDKYDLHYSPES-EIIVTIG 97 (387)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHH-HHhc----CCCCCCCCC----CCHHHHHHHHHHHHHHhCCCCCCCC-cEEEeCC
Confidence 56788888865433 4555555444 3322 111222111 1345666666665 43 4431 5999999
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCcc-CccccccccccccccccchhhhhcCC
Q 010538 112 ATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAV-DNDGLSESLVTSTKISLLPIQRRKGA 190 (508)
Q Consensus 112 ~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~-~~~~l~~~~~~~~~~~~d~~~l~~~~ 190 (508)
+++|+.+++.++ ..+|+.|+++...++++..+. +..|++++.++.+.++ .+ |++.++ +
T Consensus 98 ~~~al~~~~~~l-~~~gd~Vl~~~p~y~~~~~~~---~~~g~~~~~~~~~~~~~~~---------------~~~~l~--~ 156 (387)
T PRK07683 98 ASEAIDIAFRTI-LEPGTEVILPAPIYPGYEPII---RLCGAKPVFIDTRSTGFRL---------------TAEALE--N 156 (387)
T ss_pred hHHHHHHHHHHh-CCCCCEEEEcCCCccchHHHH---HHcCCEEEEeecCcccCCC---------------CHHHHH--H
Confidence 999999999998 678999999887777665554 4469999999886432 22 567777 4
Q ss_pred CCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC---CCCCCCCC---
Q 010538 191 SFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT---QPPDLSKY--- 264 (508)
Q Consensus 191 ~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~---~~~d~~~~--- 264 (508)
.+ .++++++++++++||||.+++.+++.++++ +|+++|+++|+|++++... .+.++...
T Consensus 157 ~~------~~~~~~i~i~~p~NPtG~~~s~~~~~~l~~---------~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 221 (387)
T PRK07683 157 AI------TEKTRCVVLPYPSNPTGVTLSKEELQDIAD---------VLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEM 221 (387)
T ss_pred hc------CcCceEEEEeCCCCCCCcCCCHHHHHHHHH---------HHHHcCeEEEEecccccceeCCCcCChhhccCC
Confidence 44 456799999999999999999766666555 4455999999999987421 22223222
Q ss_pred -CCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHH
Q 010538 265 -PVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRH 341 (508)
Q Consensus 265 -~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~ 341 (508)
+..+++.|++|.||.| | +||+++++++++.+.... . +.....+.....+
T Consensus 222 ~~~vi~~~s~SK~~~~p-GlRiG~i~~~~~l~~~~~~~~-~-----------------------~~~~~~~~~~q~~--- 273 (387)
T PRK07683 222 REKTIVINGLSKSHSMT-GWRIGFLFAPSYLAKHILKVH-Q-----------------------YNVTCASSISQYA--- 273 (387)
T ss_pred cCCeEEEeeccccccCc-cceeEEEEcCHHHHHHHHHHH-H-----------------------hccCCCChHHHHH---
Confidence 2458899999999945 7 899999998877655331 0 1111122222222
Q ss_pred HHHHHHh--cChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHH-
Q 010538 342 GFNLINS--LTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVE- 418 (508)
Q Consensus 342 al~~~~~--~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~- 418 (508)
+..++.+ ..++..++++.+.++++.+.|.+. ++.+..+.+ +.+++..++... ++..++.
T Consensus 274 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~--------~~~~~~~~~~~~---~~~~~~~~ 335 (387)
T PRK07683 274 ALEALTAGKDDAKMMRHQYKKRRDYVYNRLISM-------GLDVEKPTG--------AFYLFPSIGHFT---MSSFDFAL 335 (387)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc-------CCcccCCCe--------eEEEEEecccCC---CCHHHHHH
Confidence 3333322 225567778888899999999875 465554432 556666665321 2222344
Q ss_pred HHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 419 KLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 419 ~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
++++++||.+.+|..|... .++++||+++. +.+++...++.|.++
T Consensus 336 ~ll~~~gI~v~pg~~f~~~---------------------------------~~~~~Ri~~~~--~~~~~~~al~~l~~~ 380 (387)
T PRK07683 336 DLVEEAGLAVVPGSAFSEY---------------------------------GEGYVRLSYAY--SIETLKEGLDRLEAF 380 (387)
T ss_pred HHHHhCCEEEcCchhhCCC---------------------------------CCCeEEEEecC--CHHHHHHHHHHHHHH
Confidence 4578899999998755321 25789999995 688888888888776
Q ss_pred hh
Q 010538 499 VN 500 (508)
Q Consensus 499 ~~ 500 (508)
++
T Consensus 381 l~ 382 (387)
T PRK07683 381 LQ 382 (387)
T ss_pred HH
Confidence 53
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.7e-23 Score=216.42 Aligned_cols=365 Identities=14% Similarity=0.030 Sum_probs=244.8
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccc-cCCCCCccchhhhhhHHHHH-HHHHHHHHcCCCCCCceEEE---cCChH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNV-YGNPHSQSDISLATCDIVRA-AREQVLDYFNASMKDYKCIF---TSGAT 113 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~r~~la~~~~~~~~~~~i~~---t~g~t 113 (508)
.+.+-|- ++...+++.+++++...+...+ .+.|++.+..|....+.++. +++..+++|++..+ .+.+ ..+++
T Consensus 34 ~~~l~li-asen~~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~~~~--~~~~nv~~~SG~ 110 (475)
T PLN03226 34 WKGLELI-ASENFTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRLDPE--KWGVNVQPLSGS 110 (475)
T ss_pred HcCeeEe-cCCccCCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhCCCcc--eeEEecCcCchH
Confidence 4455554 6677789999888766542222 25666776666555555554 77788999999877 4544 36777
Q ss_pred HHHHHHHhhcCCCCCCeEEEecc---cccchHHHHHHH--HhcCCeEEEEcc--C-CccCccccccccccccccccchhh
Q 010538 114 AALKLVGEAFPWSHQSSYMYTME---NHNSVLGIREYA--LSQGAAAFAIDV--E-EAVDNDGLSESLVTSTKISLLPIQ 185 (508)
Q Consensus 114 ~al~~~~~~l~~~~g~~vl~~~~---~h~s~~~~~~~~--~~~G~~v~~v~~--~-~~~~~~~l~~~~~~~~~~~~d~~~ 185 (508)
.|+..++.++ .++|+.|+..+. .|.+........ ...+..+..++. + ..+.+ |+++
T Consensus 111 ~AN~av~~aL-~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~i---------------D~d~ 174 (475)
T PLN03226 111 PANFAVYTAL-LQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLI---------------DYDK 174 (475)
T ss_pred HHHHHHHHHh-CCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecCCCCCc---------------CHHH
Confidence 7999999998 789999998553 333321111111 111222222233 3 23444 6788
Q ss_pred hhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCC--
Q 010538 186 RRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSK-- 263 (508)
Q Consensus 186 l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~-- 263 (508)
++ +.+.+ .++++|++. .+.+|...|+++|.++|++ +|+++++|++|++|..+.+...
T Consensus 175 Le--~~l~~-----~~pklIv~~--~S~~s~~~D~a~i~~ia~~------------~ga~LlvD~AH~~Gli~~~~~~~p 233 (475)
T PLN03226 175 LE--KKAML-----FRPKLIIAG--ASAYPRDWDYARMRKIADK------------VGALLMCDMAHISGLVAAQEAASP 233 (475)
T ss_pred HH--HHHhh-----cCCeEEEEe--cCcCCCccCHHHHHHHHHH------------cCCEEEEEchhhhCcccCCCCCCC
Confidence 88 55532 345666553 2447899999999999998 9999999999999988776542
Q ss_pred -CCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhcc-CccccccCCCCChhHHHHHHH
Q 010538 264 -YPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQ-GVEELFEDGTASFLSIASIRH 341 (508)
Q Consensus 264 -~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~gt~~~~~~~~l~~ 341 (508)
.++|++++|+|||++||.| |+++++++.++.+. ++ .... .++..... .....+ .|++++..++++.+
T Consensus 234 ~~~~Div~~t~hK~L~GP~G-g~I~~~~~~~~~~~----~g-~~~~----~d~~~~i~~a~~~~~-~g~p~~~~iaal~a 302 (475)
T PLN03226 234 FEYCDVVTTTTHKSLRGPRG-GMIFFRKGPKPPKG----QG-EGAV----YDYEDKINFAVFPGL-QGGPHNHTIAALAV 302 (475)
T ss_pred CCCCeEEEecCcccccCCCc-eEEEEchhhccccc----CC-CccH----HHHHHHhccccCCcc-CCCchHHHHHHHHH
Confidence 2699999999999966999 99998877643322 22 1000 01100000 001112 46688999999999
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHH
Q 010538 342 GFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLA 421 (508)
Q Consensus 342 al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L 421 (508)
|++++.+.+.+.+++++.+++++|.+.|.+. |++++.+.+. .+++.+.+... .++..++.+.|
T Consensus 303 Al~~i~~~~~~~~~~~~~~na~~L~~~L~~~-------G~~l~~~~t~-------~hi~lv~~~~~---gi~~~~~~~~L 365 (475)
T PLN03226 303 ALKQAMTPEFKAYQKQVKANAAALANRLMSK-------GYKLVTGGTD-------NHLVLWDLRPL---GLTGSRVEKVL 365 (475)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHHHHHHHHhC-------CCEEEcCCCC-------CCEEEEEccCC---CCCHHHHHHHH
Confidence 9999988889999999999999999999886 7999876443 57777776321 14455688999
Q ss_pred hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEe----cCCCCCHHHHHHHHHhhhh
Q 010538 422 SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVS----FGYMSTFEDAKVNRCSSFD 497 (508)
Q Consensus 422 ~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis----~~~~~t~eev~~l~~~~~~ 497 (508)
++.||.+..+..+.... ...++.||++ .+.-.+++|++++.+.|.+
T Consensus 366 ~~~~I~~nk~~~p~~~~------------------------------~~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~ 415 (475)
T PLN03226 366 DLAHITLNKNAVPGDSS------------------------------ALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHR 415 (475)
T ss_pred HHCCCEECCCCCCCCcc------------------------------cCCCCCcccCcHHHHHCCCCHHHHHHHHHHHHH
Confidence 99999987764221100 0125668883 4556789999999999998
Q ss_pred hhhh
Q 010538 498 FVNF 501 (508)
Q Consensus 498 ~~~~ 501 (508)
.++.
T Consensus 416 ~~~~ 419 (475)
T PLN03226 416 AVTI 419 (475)
T ss_pred HHHH
Confidence 8874
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-23 Score=213.56 Aligned_cols=319 Identities=14% Similarity=0.120 Sum_probs=219.3
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHH
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALK 117 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~ 117 (508)
++.+.|+.+..+. +++.+.+++.+. ......+|. ...+.+|+.+|++++++++ +|++|+|+++++.
T Consensus 22 ~~~i~l~~~~~~~~~~~~~~~a~~~~-~~~~~~y~~----------~g~~~lr~~ia~~~~~~~~--~I~~~~G~~~~l~ 88 (352)
T PRK03321 22 PGAIKLSSNETPFGPLPSVRAAIARA-AAGVNRYPD----------MGAVELRAALAEHLGVPPE--HVAVGCGSVALCQ 88 (352)
T ss_pred ccceeccCCCCCCCCCHHHHHHHHHH-HHhcCcCCC----------CcHHHHHHHHHHHhCcCHH--HEEECCCHHHHHH
Confidence 3678899886655 566677766443 222211221 1257889999999999888 8999999999999
Q ss_pred HHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCC
Q 010538 118 LVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP 197 (508)
Q Consensus 118 ~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~ 197 (508)
.++.++ .++|+.|+++...++. ....++..|.+++.+|.+.+..+ |+++++ +++
T Consensus 89 ~~~~~~-~~~gd~Vli~~p~y~~---~~~~~~~~g~~~~~v~~~~~~~~---------------~~~~l~--~~~----- 142 (352)
T PRK03321 89 QLVQAT-AGPGDEVIFAWRSFEA---YPILVQVAGATPVQVPLTPDHTH---------------DLDAMA--AAI----- 142 (352)
T ss_pred HHHHHh-cCCCCEEEeCCCCHHH---HHHHHHHcCCEEEEccCCCCCCC---------------CHHHHH--Hhh-----
Confidence 999887 6889999987644433 33345567999999998744444 578888 554
Q ss_pred CCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCC----CCCCCCC---CCCCcEEE
Q 010538 198 AGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCV----TQPPDLS---KYPVDFVV 270 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g----~~~~d~~---~~~~D~~~ 270 (508)
.+++++|++++++||||.++|.+++.++++. + ++++++++|+++..- ..+..+. ..+--+++
T Consensus 143 -~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~~---------~-~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~ 211 (352)
T PRK03321 143 -TDRTRLIFVCNPNNPTGTVVTPAELARFLDA---------V-PADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVL 211 (352)
T ss_pred -ccCCCEEEEeCCCCCcCCCcCHHHHHHHHHh---------C-CCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEE
Confidence 3578999999999999999999999999985 2 369999999998631 1111111 11234778
Q ss_pred EeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHh
Q 010538 271 MSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINS 348 (508)
Q Consensus 271 ~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~ 348 (508)
.|++|.|| .+| +|++++++++++.+..... ..+.+.....++.+++.....
T Consensus 212 ~S~SK~~g-~~GlRiG~~v~~~~~~~~~~~~~~--------------------------~~~~s~~~q~~a~~~l~~~~~ 264 (352)
T PRK03321 212 RTFSKAYG-LAGLRVGYAVGHPEVIAALRKVAV--------------------------PFSVNSLAQAAAIASLAAEDE 264 (352)
T ss_pred ecchHHhh-hHHHhhhhhcCCHHHHHHHHHhcC--------------------------CCCCCHHHHHHHHHHhcCHHH
Confidence 89999998 557 8999999888776654311 123344444444444432222
Q ss_pred cChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCee
Q 010538 349 LTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQL 428 (508)
Q Consensus 349 ~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v 428 (508)
..+..++..+.++++.+.|++. ++.+. ++. +++++++++. +..++.+.|.++||.+
T Consensus 265 --~~~~~~~~~~~r~~~~~~L~~~-------~~~~~-~~~--------g~~i~i~l~~------~~~~~~~~l~~~gI~v 320 (352)
T PRK03321 265 --LLERVDAVVAERDRVRAALRAA-------GWTVP-PSQ--------ANFVWLPLGE------RTADFAAAAAEAGVVV 320 (352)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHC-------CCccC-CCC--------CCEEEEeCCC------CHHHHHHHHHHCCEEE
Confidence 2333444555667788888775 44432 221 6788888742 1235788899999998
Q ss_pred ccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 429 RTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 429 ~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
++ |. ...+||+++ +.++++++++++.++++
T Consensus 321 ~~---~~------------------------------------~~~iRi~~~---~~~~~~~~~~al~~~~~ 350 (352)
T PRK03321 321 RP---FA------------------------------------GEGVRVTIG---APEENDAFLRAARAWRA 350 (352)
T ss_pred Ec---cC------------------------------------CCcEEEeeC---CHHHHHHHHHHHHHHhc
Confidence 75 21 245999987 99999999999988643
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-23 Score=214.38 Aligned_cols=336 Identities=10% Similarity=-0.007 Sum_probs=217.0
Q ss_pred CCCeeeeCCCCCCC-CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc----C--CCCCCceEEEcCC
Q 010538 39 NGTVYLDHAGATLY-SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF----N--ASMKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~--~~~~~~~i~~t~g 111 (508)
++.+.|+.+....+ ++.+.+++.+.. ... ....|... .....+|+++|+++ | +++++ +|++|+|
T Consensus 32 ~~~i~l~~~~p~~~~~~~~~~~~~~~~-~~~---~~~~Y~~~----~g~~~lr~aia~~~~~~~g~~~~~~~-~i~it~G 102 (389)
T PRK08068 32 HDVINLGQGNPDQPTPEHIVEALQEAA-ENP---ANHKYSPF----RGYPFLKEAAADFYKREYGVTLDPET-EVAILFG 102 (389)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHH-hCC---CCCCCCCC----CCCHHHHHHHHHHHHHHhCCCCCCCc-cEEEcCC
Confidence 56788887764443 345555543332 210 01112111 11345566666665 5 45541 5999999
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCC
Q 010538 112 ATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGAS 191 (508)
Q Consensus 112 ~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~ 191 (508)
+++++.+++.++ ..+|+.|+++...|+.+.... +..|++++.+|++.+..+ .+|+++++ ++
T Consensus 103 ~~~~l~~~~~~~-~~~gd~vlv~~P~y~~~~~~~---~~~g~~~~~i~~~~~~~~-------------~~d~~~l~--~~ 163 (389)
T PRK08068 103 GKAGLVELPQCL-MNPGDTILVPDPGYPDYLSGV---ALARAQFETMPLIAENNF-------------LPDYTKIP--EE 163 (389)
T ss_pred cHHHHHHHHHHh-CCCCCEEEEcCCCCcchHHHH---HhcCCEEEEeecccccCC-------------CCCHHHHH--Hh
Confidence 999999999988 578999999987777665544 456999999998743222 12577787 54
Q ss_pred CCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCCCCCCC----
Q 010538 192 FPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQPPDLSK---- 263 (508)
Q Consensus 192 l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d~~~---- 263 (508)
+ .+++++|++++++||||.+++.+++.++++ +|++++++||+|.++.. +..+.++..
T Consensus 164 ~------~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~---------la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~ 228 (389)
T PRK08068 164 V------AEKAKLMYLNYPNNPTGAVATKAFFEETVA---------FAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGA 228 (389)
T ss_pred c------cccceEEEEECCCCCCCCcCCHHHHHHHHH---------HHHHcCeEEEEehhhhhhccCCCCCcChhhCCCc
Confidence 4 346899999999999999999987777665 45569999999999853 212223211
Q ss_pred CCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHH
Q 010538 264 YPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRH 341 (508)
Q Consensus 264 ~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~ 341 (508)
.+..+++.|++|.|| .+| +||+++++++++.+..... .+..++++..+.++ ..
T Consensus 229 ~~~~i~~~S~SK~~g-~~GlRiG~~~~~~~l~~~l~~~~~-----------------------~~~~~~~~~~q~~~-~~ 283 (389)
T PRK08068 229 KDVGIELYTLSKTFN-MAGWRVAFAVGNESVIEAINLLQD-----------------------HLFVSLFGAIQDAA-IE 283 (389)
T ss_pred cCCEEEEecchhccC-CccceeEeEecCHHHHHHHHHHHh-----------------------hccCCCChHHHHHH-HH
Confidence 124588999999998 557 8999999988876654311 11122332222222 22
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHH
Q 010538 342 GFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLA 421 (508)
Q Consensus 342 al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L 421 (508)
++..- ...++..++++.+.++++.+.|++. ++.+..+.+ +.++++.+++. ++..++.+.|
T Consensus 284 ~l~~~-~~~~~~~~~~~~~~r~~~~~~L~~~-------g~~~~~~~g--------~~~~~v~~~~~----~~~~~~~~~l 343 (389)
T PRK08068 284 ALLSD-QSCVAELVARYESRRNAFISACREI-------GWEVDAPKG--------SFFAWMPVPKG----YTSEQFADLL 343 (389)
T ss_pred HHhCc-HHHHHHHHHHHHHHHHHHHHHHHHC-------CCcccCCCe--------eEEEEEECCCC----CCHHHHHHHH
Confidence 33211 1225677888889999999999876 565554432 56788888642 2334577777
Q ss_pred h-hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhh
Q 010538 422 S-LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFD 497 (508)
Q Consensus 422 ~-~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~ 497 (508)
. ++||.+++|..+... ..+++||+++. +.+.+...++.+++
T Consensus 344 ~~~~gi~v~pg~~f~~~---------------------------------~~~~iRi~~~~--~~~~l~~al~~l~~ 385 (389)
T PRK08068 344 LEKAHVAVAPGNGFGEH---------------------------------GEGYVRVGLLT--DEERLREAVERIGK 385 (389)
T ss_pred HHhCCEEEecchHhCcc---------------------------------CCCeEEEEEcC--CHHHHHHHHHHHHH
Confidence 6 479999998654221 25789999973 55666666666554
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-23 Score=215.79 Aligned_cols=326 Identities=11% Similarity=0.028 Sum_probs=217.1
Q ss_pred CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcC-CCCCCeE
Q 010538 53 SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFP-WSHQSSY 131 (508)
Q Consensus 53 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~-~~~g~~v 131 (508)
+|.+++++.+.. ..+..++. ....-........++++.+++++|.+ . .++++++++|+..++..+. ..+++.|
T Consensus 61 ~p~v~~a~~~~~-~~~~~~~~-~s~~~~g~~~~~~~Le~~la~~~g~~-~---~l~~~sG~~an~~ai~~l~~~~~~~~v 134 (402)
T TIGR01821 61 HPEVLQAMHETL-DKYGAGAG-GTRNISGTNIPHVELEAELADLHGKE-S---ALVFTSGYVANDATLATLAKIIPGCVI 134 (402)
T ss_pred CHHHHHHHHHHH-HHcCCCCc-chhhhhCCcHHHHHHHHHHHHHhCCC-e---EEEECchHHHHHHHHHHhhCCCCCCEE
Confidence 666777776644 33222221 11111123455778999999999964 3 3445555778888887763 2357777
Q ss_pred EEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCC
Q 010538 132 MYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSEC 211 (508)
Q Consensus 132 l~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~ 211 (508)
+++...|++....+. ..|+++..++.. |+++++ +.++. ...+++++|++++++
T Consensus 135 ~~~~~~h~s~~~~~~---~~g~~~~~~~~~--------------------d~~~l~--~~l~~--~~~~~~~~v~~e~~~ 187 (402)
T TIGR01821 135 FSDELNHASMIEGIR---HSGAEKFIFRHN--------------------DVAHLE--KLLQS--VDPNRPKIIAFESVY 187 (402)
T ss_pred EEcchHhHHHHHHHH---HcCCeEEEECCC--------------------CHHHHH--HHHHh--ccCCCCeEEEEcCCC
Confidence 777778877765443 357777655532 123333 22211 112368999999999
Q ss_pred CCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC-CC--------CCCCCCCcEEEEeccccccCCCc
Q 010538 212 NFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ-PP--------DLSKYPVDFVVMSFYKIFGYPTG 282 (508)
Q Consensus 212 n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~-~~--------d~~~~~~D~~~~S~~K~~g~P~G 282 (508)
|++|.+.|+++|.++|++ +|+++++|++|+.|.. +. ++. .++|+++.|++|.+| ..|
T Consensus 188 ~~~G~~~~l~~i~~l~~~------------~~~~livDea~~~G~~g~~g~g~~~~~~~~-~~~div~~t~sKa~g-~~G 253 (402)
T TIGR01821 188 SMDGDIAPIEEICDLADK------------YGALTYLDEVHAVGLYGPRGGGIAERDGLM-HRIDIIEGTLAKAFG-VVG 253 (402)
T ss_pred CCCCCccCHHHHHHHHHH------------cCCEEEEeCcccccccCCCCCccchhccCC-CCCeEEEEechhhhc-cCC
Confidence 999999999999999998 8999999999986542 11 111 146899999999999 446
Q ss_pred ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHH
Q 010538 283 LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLG 362 (508)
Q Consensus 283 ~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~ 362 (508)
|+++.++++++.+..... ... ..++.+...+++..++++.+.+. +.+.++..+++
T Consensus 254 -G~i~~~~~~~~~l~~~~~---------------------~~~-~t~~~~~~~~aaa~aaL~~~~~~--~~~~~~~~~~~ 308 (402)
T TIGR01821 254 -GYIAASRKLIDAIRSYAP---------------------GFI-FTTSLPPAIAAGATASIRHLKES--QDLRRAHQENV 308 (402)
T ss_pred -ceeecCHHHHHHHHHhCc---------------------Cce-ecCcCCHHHHHHHHHHHHHhhcC--HHHHHHHHHHH
Confidence 888888887766543210 001 12344555677777889887664 66777788999
Q ss_pred HHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHh-hCCCeeccCCCCCchHHHh
Q 010538 363 MYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLAS-LSGIQLRTGCFCNPGACAK 441 (508)
Q Consensus 363 ~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~-~~gI~v~~g~~~~~~~~~~ 441 (508)
+++.+.|+++ +++++.+. ++++.+.++... ....+.+.|. ++||.+++...+..+.
T Consensus 309 ~~l~~~L~~~-------g~~~~~~~---------~~i~~i~~~~~~----~a~~~~~~L~~~~Gi~v~~~~~p~~~~--- 365 (402)
T TIGR01821 309 KRLKNLLEAL-------GIPVIPNP---------SHIVPVIIGDAA----LCKKVSDLLLNKHGIYVQPINYPTVPR--- 365 (402)
T ss_pred HHHHHHHHHc-------CCCcCCCC---------CCEEEEEeCCHH----HHHHHHHHHHhcCCEEEEeECCCCCCC---
Confidence 9999999886 55555332 677777664311 1234666664 5699998754332221
Q ss_pred hcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 442 YLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 442 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
..+++||+++.++|.+|+++++++++++++.+
T Consensus 366 -----------------------------g~~~lRis~~~~~t~edi~~~~~~l~~~~~~~ 397 (402)
T TIGR01821 366 -----------------------------GTERLRITPTPAHTDKMIDDLVEALLLVWDRL 397 (402)
T ss_pred -----------------------------CCceEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence 14689999999999999999999999887643
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=212.81 Aligned_cols=282 Identities=15% Similarity=0.092 Sum_probs=199.8
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccC
Q 010538 86 VRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVD 165 (508)
Q Consensus 86 ~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~ 165 (508)
..++|+++|++++.+++ +|++|+|+++++.+++.. ..+|+ |++.. |++......++..|++++.+|++.. .
T Consensus 42 ~~~lr~~ia~~~~~~~~--~I~it~Gs~~~l~~~~~~--~~~~~-vv~~~---P~y~~y~~~~~~~G~~v~~vp~~~~-~ 112 (332)
T PRK06425 42 YTDIEDQIKIYTQGLKI--KVLIGPGLTHFIYRLLSY--INVGN-IIIVE---PNFNEYKGYAFTHGIRISALPFNLI-N 112 (332)
T ss_pred HHHHHHHHHHHhCCCcc--eEEECCCHHHHHHHHHHH--hCCCc-EEEeC---CChHHHHHHHHHcCCeEEEEeCCcc-c
Confidence 57789999999999998 899999999999999874 35565 44445 5666666667778999999998642 1
Q ss_pred ccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeE
Q 010538 166 NDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWM 245 (508)
Q Consensus 166 ~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~ 245 (508)
. +.+.++ ..++++|++++++||||.+++.+++.++++ +|+++|++
T Consensus 113 ~---------------~~~~l~-----------~~~~k~v~l~nP~NPTG~~~s~~~~~~l~~---------~a~~~~~~ 157 (332)
T PRK06425 113 N---------------NPEILN-----------NYNFDLIFIVSPDNPLGNLISRDSLLTISE---------ICRKKGAL 157 (332)
T ss_pred C---------------cHHHHh-----------hcCCCEEEEeCCCCCcCCccCHHHHHHHHH---------HHHHcCCE
Confidence 2 234444 236789999999999999999988888776 45568999
Q ss_pred EEEeccccCCCC--CCCC----CCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhh
Q 010538 246 VLIDAAKGCVTQ--PPDL----SKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVK 317 (508)
Q Consensus 246 vivD~a~~~g~~--~~d~----~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~ 317 (508)
||+|+++..-.. ..+. ...+--+++.|++|.|| .+| +||+++++++++.+......
T Consensus 158 iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~-l~GlRiGy~v~~~~li~~l~~~~~~--------------- 221 (332)
T PRK06425 158 LFIDEAFIDFVPNRAEEDVLLNRSYGNVIIGRSLTKILG-IPSLRIGYIATDDYNMKISRKITEP--------------- 221 (332)
T ss_pred EEEecchhccccccchhHHHHhccCCCEEEEeecHHhcC-CchhhheeeecCHHHHHHHHHcCCC---------------
Confidence 999999763211 1111 11133578899999999 557 89999999887766543111
Q ss_pred hccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCC
Q 010538 318 RRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTG 397 (508)
Q Consensus 318 ~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (508)
.+.+......+. .... +..++...+.+++.++++.+.|+++ +++++.++. +
T Consensus 222 -----------~~~~~~~~~~l~-~~~~--~~~~~~~~~~~~~~r~~l~~~L~~~-------g~~~~~~~~--------g 272 (332)
T PRK06425 222 -----------WSVCDPAIDFIR-SIDL--DYVAKHSLDIMENERSYLINNLEAM-------GFRAAGDPS--------A 272 (332)
T ss_pred -----------CccCHHHHHHHH-Hhhh--HHHHHHHHHHHHHHHHHHHHHHHHC-------CCEECCCCC--------c
Confidence 111111111111 1111 1113566788888999999999886 566654433 7
Q ss_pred ceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEE
Q 010538 398 SMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRV 477 (508)
Q Consensus 398 ~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRi 477 (508)
++++++++ +. .++.+.|.++||.+++|..+... .++++||
T Consensus 273 ~f~~~~~~--~~-----~~~~~~l~~~gi~v~~~~~f~~~---------------------------------~~~~iRi 312 (332)
T PRK06425 273 NFITFMIP--DA-----HDFYSYLLKNGILVRLLDDYECL---------------------------------GEQYIRI 312 (332)
T ss_pred eEEEEEcC--CH-----HHHHHHHHHCCeEEEECCCCCCC---------------------------------CCCEEEE
Confidence 88998875 22 34778888899999998654221 1478999
Q ss_pred ecCCCCCHHHHHHHHHhhhhhh
Q 010538 478 SFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 478 s~~~~~t~eev~~l~~~~~~~~ 499 (508)
|++ +.++.++++++|++++
T Consensus 313 s~~---~~~~~~~l~~al~~~~ 331 (332)
T PRK06425 313 AIR---RRSFNIKLVNALRNFL 331 (332)
T ss_pred EeC---CHHHHHHHHHHHHHHh
Confidence 999 8999999999998765
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.9e-23 Score=215.72 Aligned_cols=325 Identities=12% Similarity=0.046 Sum_probs=215.8
Q ss_pred CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcC-CCCCCeE
Q 010538 53 SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFP-WSHQSSY 131 (508)
Q Consensus 53 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~-~~~g~~v 131 (508)
+|.+++++.+.+ ..+..... .....+.......++++.+|+++|.+ + .+++++| ++++..++..+. ..+++.|
T Consensus 62 ~p~v~~a~~~~~-~~~~~~~~-~s~~~~g~~~~~~~l~~~la~~~g~~-~--~~~~~sG-~~an~~ai~~l~~~~~~~~i 135 (407)
T PRK09064 62 HPKVIEAMIEAL-DRCGAGAG-GTRNISGTNHYHVELERELADLHGKE-A--ALVFTSG-YVSNDATLSTLAKLIPDCVI 135 (407)
T ss_pred CHHHHHHHHHHH-HHcCCCCC-CcCcCccCHHHHHHHHHHHHHHhCCC-c--EEEECcH-HHHHHHHHHHHhCCCCCCEE
Confidence 778888876544 32211111 11111123456788999999999963 4 4666555 457666666542 3467777
Q ss_pred EEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCC
Q 010538 132 MYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSEC 211 (508)
Q Consensus 132 l~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~ 211 (508)
+....+|.+....+.. .++++..++.. |++.++ +.++. ...+++++|++++++
T Consensus 136 ~~~~~~h~s~~~~~~~---~~~~~~~~~~~--------------------d~~~le--~~l~~--~~~~~~~~v~~~~v~ 188 (407)
T PRK09064 136 FSDELNHASMIEGIRR---SRCEKHIFRHN--------------------DVAHLE--ELLAA--ADPDRPKLIAFESVY 188 (407)
T ss_pred EEeCcchHHHHHHHHH---cCCcEEEECCC--------------------CHHHHH--HHHHh--ccCCCCeEEEEeCCC
Confidence 7777888877655443 46666655542 233344 33321 112568999999999
Q ss_pred CCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC-C--------CCCCCCCCcEEEEeccccccCCCc
Q 010538 212 NFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ-P--------PDLSKYPVDFVVMSFYKIFGYPTG 282 (508)
Q Consensus 212 n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~-~--------~d~~~~~~D~~~~S~~K~~g~P~G 282 (508)
|++|.+.|+++|.++|++ +|+++++|++|+.|.. + .++. .++|+++.|++|.|| +.|
T Consensus 189 s~~G~~~~l~~i~~l~~~------------~~~~livDEa~~~G~~g~~g~g~~~~~~~~-~~~div~~t~sKa~g-~~G 254 (407)
T PRK09064 189 SMDGDIAPIAEICDLADK------------YNALTYLDEVHAVGMYGPRGGGIAERDGLM-DRIDIIEGTLAKAFG-VMG 254 (407)
T ss_pred CCCccccCHHHHHHHHHH------------cCCEEEEECCCcccccCCCCCChHHhcCCC-CCCeEEEEecchhhh-ccC
Confidence 999999999999999998 8999999999985531 1 1111 146899999999999 667
Q ss_pred ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHH
Q 010538 283 LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLG 362 (508)
Q Consensus 283 ~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~ 362 (508)
|+++.+++.++.+..... ...+. .+.+....+++.++++++.+. ....+++.+++
T Consensus 255 -G~~~~~~~~~~~l~~~~~---------------------~~~~t-~~~~~~~~~aa~~al~~~~~~--~~~~~~~~~~~ 309 (407)
T PRK09064 255 -GYIAGSAALVDAVRSYAP---------------------GFIFT-TSLPPAIAAAALASIRHLKES--NEERERHQERA 309 (407)
T ss_pred -ceEecCHHHHHHHHHhCc---------------------ccccc-CcCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHH
Confidence 898888887765543211 01111 233445566677788887764 45578899999
Q ss_pred HHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHh-hCCCeeccCCCCCchHHHh
Q 010538 363 MYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLAS-LSGIQLRTGCFCNPGACAK 441 (508)
Q Consensus 363 ~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~-~~gI~v~~g~~~~~~~~~~ 441 (508)
+++.+.|+++ +++++.+. ++++.+.+++. ....++.+.|. ++||.+++......+.
T Consensus 310 ~~l~~~L~~~-------g~~~~~~~---------~~iv~i~~~~~----~~~~~l~~~L~~~~gi~v~~~~~p~~~~--- 366 (407)
T PRK09064 310 AKLKAALDAA-------GIPVMPNE---------SHIVPVMVGDP----EKCKKASDMLLEEHGIYVQPINYPTVPR--- 366 (407)
T ss_pred HHHHHHHHHc-------CCCCCCCC---------CCEEEEEeCCH----HHHHHHHHHHHHhCCEEEeeECCCCCCC---
Confidence 9999999886 56555432 67787777531 11234777664 5699998743221110
Q ss_pred hcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 442 YLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 442 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
..+++|||++.++|.+|+++++++|+++++.
T Consensus 367 -----------------------------~~~~lRis~~~~~t~edi~~l~~~l~~~~~~ 397 (407)
T PRK09064 367 -----------------------------GTERLRITPTPFHTDEMIDHLVEALVEVWAR 397 (407)
T ss_pred -----------------------------CCceEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 1367999999999999999999999988654
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-23 Score=216.22 Aligned_cols=338 Identities=11% Similarity=0.016 Sum_probs=219.0
Q ss_pred CCCeeeeCCCC-----CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC-----CCCCCceEEE
Q 010538 39 NGTVYLDHAGA-----TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN-----ASMKDYKCIF 108 (508)
Q Consensus 39 ~~~iyld~~~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~-----~~~~~~~i~~ 108 (508)
++.+.|+.+.. .++++.+.+++.+.+... ....|.. .....++|+.++++++ ++++ +|++
T Consensus 31 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~Y~~----~~g~~~lr~aia~~~~~~~~~~~~~--~i~~ 100 (401)
T TIGR01264 31 KPMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDSG----KYNGYAP----TVGALSAREAIASYYHNPDGPIEAD--DVVL 100 (401)
T ss_pred CCeeecCCCCCCCcCCCCCCHHHHHHHHHHHhcc----CCCCCCC----CCCCHHHHHHHHHHHhhcCCCCCHH--HEEE
Confidence 46688887654 245666666654433211 0111211 1123557788888887 6777 8999
Q ss_pred cCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc--cCccccccccccccccccchhhh
Q 010538 109 TSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA--VDNDGLSESLVTSTKISLLPIQR 186 (508)
Q Consensus 109 t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~--~~~~~l~~~~~~~~~~~~d~~~l 186 (508)
|+|+++|+.+++.++ ..+|+.|+++...|+ .+...++..|+++..++++.+ ..+ |++.+
T Consensus 101 t~G~~~al~~~~~~l-~~~gd~v~i~~P~y~---~~~~~~~~~g~~v~~~~~~~~~~~~~---------------d~~~l 161 (401)
T TIGR01264 101 CSGCSHAIEMCIAAL-ANAGQNILVPRPGFP---LYETLAESMGIEVKLYNLLPDKSWEI---------------DLKQL 161 (401)
T ss_pred CcChHHHHHHHHHHh-CCCCCEEEEeCCCCh---hHHHHHHHcCCEEEEeecCCccCCCC---------------CHHHH
Confidence 999999999999998 578899998875554 444556667999999987543 233 67888
Q ss_pred hcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCCCCCC
Q 010538 187 RKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQPPDLS 262 (508)
Q Consensus 187 ~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d~~ 262 (508)
+ +++ .++++++++++++||||.+++.+++.++++ +|+++|++||+|+++.. +....++.
T Consensus 162 ~--~~~------~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~---------~a~~~~~~ii~De~y~~~~~~~~~~~~~~ 224 (401)
T TIGR01264 162 E--SLI------DEKTAALIVNNPSNPCGSVFSRQHLEEILA---------VAERQCLPIIADEIYGDMVFSGATFEPLA 224 (401)
T ss_pred H--HHh------ccCceEEEEcCCCCCCCCCCCHHHHHHHHH---------HHHHCCCEEEEEhhhhhhccCCcccccHH
Confidence 8 544 346799999999999999999776666665 45559999999999863 21122222
Q ss_pred CCC---CcEEEEeccccccCCCc--ceEEEEec------hhHhhhccccccCceEEecccchhhhhhccCccccccCCCC
Q 010538 263 KYP---VDFVVMSFYKIFGYPTG--LGALIMRN------DAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTA 331 (508)
Q Consensus 263 ~~~---~D~~~~S~~K~~g~P~G--~G~l~~~~------~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 331 (508)
... .-+++.|++|.|+ .+| +||+++++ +.++.+.... .....+
T Consensus 225 ~~~~~~~vi~~~SfSK~~~-~~GlRiG~iv~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~ 278 (401)
T TIGR01264 225 SLSSTVPILSCGGLAKRWL-VPGWRLGWIIIHDRRGILRDIRDGLVKLS-------------------------QRILGP 278 (401)
T ss_pred HcCCCCcEEEEccCcccCC-CccceEEEEEecCcchhHHHHHHHHHHHh-------------------------hccCCC
Confidence 221 1378899999888 447 89999874 2222221110 001122
Q ss_pred ChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCC--CC
Q 010538 332 SFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRP--DG 409 (508)
Q Consensus 332 ~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~ 409 (508)
+.....++..+++...+..+++.++++.+.++++.+.|+++ +++.+..|.+ +++++++++.. ..
T Consensus 279 ~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~~------~~~~~~~p~~--------g~f~~~~~~~~~~~~ 344 (401)
T TIGR01264 279 CTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAV------PGLRPVMPSG--------AMYMMVGIEMEHFPE 344 (401)
T ss_pred CcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhC------CCCcccCCCe--------eeEEEEEecccccCC
Confidence 33334444444432112235677788888889999999876 3555544543 78999987531 11
Q ss_pred CccCHHHHHHHH-hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHH
Q 010538 410 SWFGYREVEKLA-SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDA 488 (508)
Q Consensus 410 ~~~~~~~l~~~L-~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev 488 (508)
. .+..++.+.| +++||.+.+|..|. ..+++|||++. ..+++
T Consensus 345 ~-~~~~~~~~~l~~~~gI~v~pg~~f~-----------------------------------~~~~iRis~~~--~~~~l 386 (401)
T TIGR01264 345 F-KNDVEFTERLVAEQSVFCLPGSCFE-----------------------------------YPGFFRVVLTV--PVVMM 386 (401)
T ss_pred C-CCHHHHHHHHHHhCCEEEeCchhcC-----------------------------------CCCeEEEEEcC--CHHHH
Confidence 0 1233455555 68999999986442 15789999984 57899
Q ss_pred HHHHHhhhhhhh
Q 010538 489 KVNRCSSFDFVN 500 (508)
Q Consensus 489 ~~l~~~~~~~~~ 500 (508)
+..++.|.++++
T Consensus 387 ~~~l~rl~~~~~ 398 (401)
T TIGR01264 387 EEACSRIQEFCE 398 (401)
T ss_pred HHHHHHHHHHHh
Confidence 998888887664
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.1e-23 Score=214.92 Aligned_cols=337 Identities=12% Similarity=0.042 Sum_probs=223.7
Q ss_pred CeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHH
Q 010538 41 TVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLV 119 (508)
Q Consensus 41 ~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~ 119 (508)
..|..|+..+. .+|.+++++.+.+ ..+..++. .............++++++|+++|.+ . .+++++|+ +|+..+
T Consensus 48 ~~~~sn~ylgl~~~p~v~~a~~~~~-~~~~~~~~-~s~~~~~~~~~~~~le~~la~~~g~~-~--~~~~~SG~-~An~~a 121 (406)
T PRK13393 48 TVWCSNDYLGMGQHPAVLAAMHEAL-DTCGAGAG-GTRNISGTNHYHVLLEAELADLHGKE-A--ALLFTSGY-VSNWAA 121 (406)
T ss_pred EEeecccccCCCCCHHHHHHHHHHH-HHcCCCCc-ccccccCChHHHHHHHHHHHHHhCCC-c--EEEeCCcH-HHHHHH
Confidence 34555556666 4777888876654 33222221 11111122346788899999999974 3 46666655 588888
Q ss_pred HhhcCC-CCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCC
Q 010538 120 GEAFPW-SHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPA 198 (508)
Q Consensus 120 ~~~l~~-~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~ 198 (508)
+.++.. .+|+.|++...+|+++...+.. .|.+++.++..+ ++.++ +.++ ...
T Consensus 122 i~~l~~~~~g~~I~~~~~~H~s~~~~~~~---~g~~~~~~~~~d--------------------~~~l~--~~l~--~~~ 174 (406)
T PRK13393 122 LSTLGSRLPGCVILSDELNHASMIEGIRH---SRAEKRIFRHND--------------------PADLE--RKLS--DLD 174 (406)
T ss_pred HHHhhcCCCCCEEEEccchhHHHHHHHHH---cCCeEEEeCCCC--------------------HHHHH--HHHH--hcc
Confidence 886632 2678888888899987766543 477777776432 22233 2221 111
Q ss_pred CCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC-CC-----CCC--CCCCcEEE
Q 010538 199 GDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ-PP-----DLS--KYPVDFVV 270 (508)
Q Consensus 199 ~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~-~~-----d~~--~~~~D~~~ 270 (508)
.+++++|++++++|++|.+.|+++|.++|++ +|+++++|++|+.|.. +. ... ..++|+++
T Consensus 175 ~~~~~~v~~~~v~~~~G~~~~l~~i~~l~~~------------~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~ 242 (406)
T PRK13393 175 PHRPKLVAFESVYSMDGDIAPIAEICDVAEK------------HGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIE 242 (406)
T ss_pred CCCCEEEEEcCCCCCCCchhCHHHHHHHHHH------------cCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEE
Confidence 2467999999999999999999999999998 8999999999986542 11 111 11368888
Q ss_pred EeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccc-cCCCCChhHHHHHHHHHHHHHhc
Q 010538 271 MSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELF-EDGTASFLSIASIRHGFNLINSL 349 (508)
Q Consensus 271 ~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~gt~~~~~~~~l~~al~~~~~~ 349 (508)
.|++|.+| ..| |+++.+++.++.+... ...+ ..++.+....+++.++++.+.+.
T Consensus 243 ~tlsKa~g-~~G-G~~~~~~~~~~~l~~~-----------------------~~~~~~t~~~~p~~~aa~~aaL~~~~~~ 297 (406)
T PRK13393 243 GTLAKAFG-VMG-GYITGSAALCDFIRSF-----------------------ASGFIFTTSLPPAVAAGALASVRHLKAS 297 (406)
T ss_pred EeCchhhc-ccC-ceeeCCHHHHHHHHHh-----------------------CcCceecCccCHHHHHHHHHHHHHHhhC
Confidence 99999999 446 8888888776655432 1111 13445666677777899987664
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhh-CCCee
Q 010538 350 TVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASL-SGIQL 428 (508)
Q Consensus 350 g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~-~gI~v 428 (508)
+ ..++++.++++++.+.|+++ +++++.+. ++++.+.+.+. .....+.+.|.+ +||.+
T Consensus 298 ~--~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~---------~~i~~v~~~~~----~~~~~l~~~L~~~~Gi~v 355 (406)
T PRK13393 298 S--AERERHQDRVARLRARLDKA-------GIPHLPNP---------SHIVPVMVGDP----VLCKQISDELLDRYGIYV 355 (406)
T ss_pred H--HHHHHHHHHHHHHHHHHHHc-------CCCcCCCC---------CCeEEEEeCCH----HHHHHHHHHHHHhCCEEE
Confidence 2 33467788899999999875 45444221 67777765331 112347777766 69999
Q ss_pred ccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 429 RTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 429 ~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
+++.....+. ..+.+|++++.++|.+|+++++++|+++++.
T Consensus 356 ~~~~~p~~p~--------------------------------g~~~iRis~~~~~t~edid~l~~~l~~~~~~ 396 (406)
T PRK13393 356 QPINYPTVPR--------------------------------GTERLRITPSPLHTDADIEHLVQALSEIWAR 396 (406)
T ss_pred EeECCCCCCC--------------------------------CCceEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 8854322211 1367999999999999999999999988654
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-23 Score=215.95 Aligned_cols=355 Identities=13% Similarity=0.057 Sum_probs=220.6
Q ss_pred chHHHHHHhhccC----CCCCeeeeCCCCCCC-CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC-
Q 010538 25 SIDQIRATEFKRL----ENGTVYLDHAGATLY-SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN- 98 (508)
Q Consensus 25 ~~~~~r~~~f~~~----~~~~iyld~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~- 98 (508)
.+..+++ .+..+ +.+.+.|+.+-...+ ++.+.+++ ...+.... .|........+.+.+.+.+.+.+|
T Consensus 12 ~~~~~~~-~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~-~~~~~~~~-----~Y~~~~G~~~lr~~ia~~~~~~~g~ 84 (396)
T PRK09147 12 PFEKLRA-LFAGVTPPADLPPISLSIGEPKHPTPAFIKDAL-AANLDGLA-----SYPTTAGLPALREAIAAWLERRYGL 84 (396)
T ss_pred hHHHHHH-HHHhhhhccCCCeEecCCCCCCCCCCHHHHHHH-HHHhhhhc-----CCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 4555665 54322 257888887765544 44444444 33322211 121111112233333333333446
Q ss_pred --CCCCCceEEEcCChHHHHHHHHhhcCCCC---CCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCcccccccc
Q 010538 99 --ASMKDYKCIFTSGATAALKLVGEAFPWSH---QSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESL 173 (508)
Q Consensus 99 --~~~~~~~i~~t~g~t~al~~~~~~l~~~~---g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~ 173 (508)
+++++ +|++|+|+++|+.+++.++ ..+ |+.|+++...|+.+... ++..|++++.||.+.+..+
T Consensus 85 ~~~~~~~-~i~it~G~~~al~~~~~~l-~~~~~~gd~vlv~~P~y~~~~~~---~~~~g~~~~~vp~~~~~~~------- 152 (396)
T PRK09147 85 PALDPAT-QVLPVNGSREALFAFAQTV-IDRDGPGPLVVCPNPFYQIYEGA---ALLAGAEPYFLNCDPANNF------- 152 (396)
T ss_pred CcCCccc-eEEECCChHHHHHHHHHHH-cCCCCCCCEEEEcCCCccchHHH---HHhcCCEEEEeccCccccC-------
Confidence 44421 7999999999999999998 566 78899887666555443 4456999999998753222
Q ss_pred ccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEecccc
Q 010538 174 VTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKG 253 (508)
Q Consensus 174 ~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~ 253 (508)
.+|+++++ +.+ .++++++++++++||||.+++.+++.++++ +|++++++||+|.++.
T Consensus 153 ------~~d~~~l~--~~~------~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~---------~a~~~~~~ii~De~y~ 209 (396)
T PRK09147 153 ------APDFDAVP--AEV------WARTQLLFVCSPGNPTGAVLPLDDWKKLFA---------LSDRYGFVIASDECYS 209 (396)
T ss_pred ------ccCHHHHH--HHH------hhccEEEEEcCCCCCcCccCCHHHHHHHHH---------HHHHcCeEEEeecccc
Confidence 11678887 433 347899999999999999999998888877 5667999999999986
Q ss_pred CCC-----CCCC-C---CC-----CCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhh
Q 010538 254 CVT-----QPPD-L---SK-----YPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVK 317 (508)
Q Consensus 254 ~g~-----~~~d-~---~~-----~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~ 317 (508)
.-. .+.. + .. .+.-+++.|++|.++.| | +||+++++++++.+.....
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~-GlRiG~~~~~~~l~~~~~~~~~---------------- 272 (396)
T PRK09147 210 EIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVP-GLRSGFVAGDAALLKKFLLYRT---------------- 272 (396)
T ss_pred ccccCCCCCCchhhhhccccCccccccEEEEeccccccCCc-cceeeeecCCHHHHHHHHHHhh----------------
Confidence 421 1111 1 01 12338899999988734 7 8999999888766553210
Q ss_pred hccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCC
Q 010538 318 RRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTG 397 (508)
Q Consensus 318 ~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (508)
....+.+.....+..+++. ....+.+.++.+++.++.+.+.|++. +.+..|++ +
T Consensus 273 --------~~~~~~~~~~q~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~--------~~~~~p~~--------g 326 (396)
T PRK09147 273 --------YHGCAMPPAVQAASIAAWN--DEAHVRENRALYREKFDAVTPILAPV--------LDVQLPDA--------G 326 (396)
T ss_pred --------hcccCCCHHHHHHHHHHhc--chhHHHHHHHHHHHHHHHHHHHHHHh--------cCCCCCCe--------e
Confidence 0111223333333333332 12235667778888888888888763 33333332 7
Q ss_pred ceEEEEeeCCCCCccCHHHHHHHH-hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEE
Q 010538 398 SMVSFNLKRPDGSWFGYREVEKLA-SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIR 476 (508)
Q Consensus 398 ~~v~~~~~~~~~~~~~~~~l~~~L-~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iR 476 (508)
.++|++++ .+ ..++.+.| +++||.+.+|..|..... +. ....+++|
T Consensus 327 ~f~~~~~~-~~-----~~~~~~~ll~~~gv~v~pg~~f~~~~~--------------------~~-------~~~~~~iR 373 (396)
T PRK09147 327 FYLWAKVP-GD-----DTEFARRLYADYNVTVLPGSYLAREAH--------------------GV-------NPGAGRVR 373 (396)
T ss_pred EEEEEECC-CC-----HHHHHHHHHHhCCEEEeCCcccccccc--------------------CC-------CCCCCeEE
Confidence 89999986 22 12355554 678999999976543100 00 01257899
Q ss_pred EecCCCCCHHHHHHHHHhhhhhh
Q 010538 477 VSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 477 is~~~~~t~eev~~l~~~~~~~~ 499 (508)
|+++. +.++++..++.|++++
T Consensus 374 i~~~~--~~~~l~~~l~rl~~~~ 394 (396)
T PRK09147 374 IALVA--PLAECVEAAERIVDFC 394 (396)
T ss_pred EEecC--CHHHHHHHHHHHHHHh
Confidence 99985 5788888888887765
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-23 Score=217.75 Aligned_cols=345 Identities=12% Similarity=0.044 Sum_probs=219.8
Q ss_pred CCCeeeeCCCC-----CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC------CCCCCceEE
Q 010538 39 NGTVYLDHAGA-----TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN------ASMKDYKCI 107 (508)
Q Consensus 39 ~~~iyld~~~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------~~~~~~~i~ 107 (508)
.++|.|..+-. -++++.+.+++.+.+.... ...|.. .....++|+.++++++ ++++ +|+
T Consensus 52 ~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~----~~~Y~~----~~G~~~lr~aia~~~~~~~~~~~~~~--~v~ 121 (430)
T PLN00145 52 RPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGK----YNSYST----CVGLLPARRAIAEYLSRDLPYELSTD--DIY 121 (430)
T ss_pred CCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCc----CCCCCC----CccCHHHHHHHHHHHhhccCCCCChh--hEE
Confidence 47999998754 2345666666654332211 111221 1224567777777764 4666 899
Q ss_pred EcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhh
Q 010538 108 FTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRR 187 (508)
Q Consensus 108 ~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~ 187 (508)
+|+|+++|+.+++.++ ..+|++|+++...|+.+... +...|++++.+++...... ..|++.++
T Consensus 122 it~G~~~al~l~~~~l-~~~Gd~Vlv~~P~y~~y~~~---~~~~g~~~~~~~~~~~~~~-------------~~d~~~l~ 184 (430)
T PLN00145 122 LTAGCAQAIEIIMSVL-AQPGANILLPRPGYPLYEAR---AVFSGLEVRHFDLLPERGW-------------EVDLEGVE 184 (430)
T ss_pred EeCCHHHHHHHHHHHh-cCCCCEEEEcCCCCccHHHH---HHHcCCEEEEeeCCcccCC-------------cCCHHHHH
Confidence 9999999999999999 58899999998777765544 3446899999886432211 12688888
Q ss_pred cCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC---CC-CCCCC--
Q 010538 188 KGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC---VT-QPPDL-- 261 (508)
Q Consensus 188 ~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~---g~-~~~d~-- 261 (508)
+++ +++++++++++++||||.++|.+++.++++ +|+++|++||+|+++.. +. ..+++
T Consensus 185 --~~~------~~~~~~i~i~~P~NPtG~v~~~~~l~~i~~---------~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~ 247 (430)
T PLN00145 185 --ALA------DENTVAMVIINPNNPCGSVYSYEHLAKIAE---------TARKLGILVIADEVYDHLTFGSKPFVPMGV 247 (430)
T ss_pred --HHh------CcCceEEEEeCCCCCCCCCCCHHHHHHHHH---------HHHHcCCEEEEeccchhhccCCCCccchhh
Confidence 444 567899999999999999999776666654 44459999999999863 11 11222
Q ss_pred -CCCCCcEEEEeccccccCCCc--ceEEEEe--chhHhhh--ccccccCceEEecccchhhhhhccCccccccCCCCChh
Q 010538 262 -SKYPVDFVVMSFYKIFGYPTG--LGALIMR--NDAAKLL--KNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFL 334 (508)
Q Consensus 262 -~~~~~D~~~~S~~K~~g~P~G--~G~l~~~--~~~~~~l--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 334 (508)
.....-+++.|++|.|+.| | +||+++. +..++.. ...+. ........++..
T Consensus 248 ~~~~~~vi~~~S~SK~~~~p-G~RlG~iv~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~ 305 (430)
T PLN00145 248 FGEVAPVLTLGSISKRWVVP-GWRLGWIATCDPNGILKETKVVDSIR---------------------NYLNISTDPATF 305 (430)
T ss_pred hcccCcEEEEeccccccCCC-CeeEEEEEEecchhhhhhhHHHHHHH---------------------HHhcccCCCCHH
Confidence 2222348899999988835 7 8999984 2222211 00000 000001122333
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEe-cCCCCCcccCCCCceEEEEeeCC--CCCc
Q 010538 335 SIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIY-GTYTSEVSYHDTGSMVSFNLKRP--DGSW 411 (508)
Q Consensus 335 ~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~ 411 (508)
...++..+++.-.+..++...+++++.++.+.+.|++++ ++... .|.+ +.+++++++.. .+..
T Consensus 306 ~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~------g~~~~~~P~g--------a~y~~v~l~~~~~~~~~ 371 (430)
T PLN00145 306 VQGAIPQIIANTKEEFFTKTLGLLKETADICYEKIKEIK------CITCPHKPEG--------SMFVMVKLDLSCLSGIK 371 (430)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCCCCcCCCe--------eeEEEeccChhhcCCCC
Confidence 344444444421122367778888999999999998863 56544 3433 78888887531 1100
Q ss_pred cCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHH
Q 010538 412 FGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVN 491 (508)
Q Consensus 412 ~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l 491 (508)
-+...+.++++++||.+.+|..|.. ++++|||+.. +.++++..
T Consensus 372 ~~~~~~~~ll~~~gV~v~pG~~fg~-----------------------------------~~~lRis~~~--~~~~l~~a 414 (430)
T PLN00145 372 DDMDFCCKLAKEESVVVLPGSALGM-----------------------------------KNWLRITFAI--DPPSLEDG 414 (430)
T ss_pred CHHHHHHHHHHhCCEEEeCccccCC-----------------------------------CCeEEEEeCC--CHHHHHHH
Confidence 0122345677889999999875421 5799999994 67778887
Q ss_pred HHhhhhhhh
Q 010538 492 RCSSFDFVN 500 (508)
Q Consensus 492 ~~~~~~~~~ 500 (508)
++.|++++.
T Consensus 415 l~rl~~~~~ 423 (430)
T PLN00145 415 LERLKSFCL 423 (430)
T ss_pred HHHHHHHHH
Confidence 777776653
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-23 Score=215.40 Aligned_cols=370 Identities=14% Similarity=0.078 Sum_probs=258.4
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhcccc--CCCCCccchhhhhhHHHHH-HHHHHHHHcCCCCCCc--eEEEcCChH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVY--GNPHSQSDISLATCDIVRA-AREQVLDYFNASMKDY--KCIFTSGAT 113 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~r~~la~~~~~~~~~~--~i~~t~g~t 113 (508)
.+.+-|= ++-..+++.+++++-. .+.+.| +.|+..|+.|....+.++. +.+.+.++||++++++ +|-.. +++
T Consensus 148 ~~~l~LI-ASEN~~S~av~~algS-~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~-SGs 224 (586)
T PLN02271 148 FKGIELI-ASENFVCRAVMEALGS-HLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPY-SCT 224 (586)
T ss_pred hcCeeec-cccccCCHHHHHHhcC-cccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccceeec-cHH
Confidence 3445553 6677789999888644 444544 5677777777766665554 7888899999887321 44443 677
Q ss_pred HHHHHHHhhcCCCCCCeEEEecccccchHHHH------HHHHhcCCeEEEEc--cC-CccCccccccccccccccccchh
Q 010538 114 AALKLVGEAFPWSHQSSYMYTMENHNSVLGIR------EYALSQGAAAFAID--VE-EAVDNDGLSESLVTSTKISLLPI 184 (508)
Q Consensus 114 ~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~------~~~~~~G~~v~~v~--~~-~~~~~~~l~~~~~~~~~~~~d~~ 184 (508)
.|+..++.++ +++||+|+..+.+|.+.+.-. ..+...|..+..+| ++ .++.+ |.+
T Consensus 225 ~AN~aV~~AL-l~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~I---------------Dyd 288 (586)
T PLN02271 225 SANFAVYTGL-LLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYI---------------DYD 288 (586)
T ss_pred HHHHHHHHHh-cCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEcccccccCcc---------------CHH
Confidence 7999999999 899999999998888765432 22334576677766 43 24555 678
Q ss_pred hhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCC--
Q 010538 185 QRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLS-- 262 (508)
Q Consensus 185 ~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~-- 262 (508)
+++ +. +...+|++|++.+..++ ..+|+++|.++|++ +|+++++|++|..|.++.++.
T Consensus 289 ~le--k~-----a~~~rPKLII~g~Sayp--r~~D~~~i~eIAde------------vGA~LmvD~AH~aGLIa~g~~~s 347 (586)
T PLN02271 289 KLE--EK-----ALDFRPKILICGGSSYP--REWDYARFRQIADK------------CGAVLMCDMAHISGLVAAKECVN 347 (586)
T ss_pred HHH--HH-----hhhcCCeEEEECchhcc--CcCCHHHHHHHHHH------------cCCEEEEECcccccccccCcCCC
Confidence 888 32 23578999999888887 88999999999998 899999999999998876643
Q ss_pred -CCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhc-cCccccccCCCCChhHHHHHH
Q 010538 263 -KYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRR-QGVEELFEDGTASFLSIASIR 340 (508)
Q Consensus 263 -~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~gt~~~~~~~~l~ 340 (508)
..++|++++|+|||+.||.| |+++++++.....++...+|+... ...++.... ....-.+..|+.+.. ++++.
T Consensus 348 P~~~aDvvt~TTHKtLrGPrG-G~I~~r~~~~~~~~g~~gs~s~~~---~~~d~~~kI~~aVfPglqgGphn~~-IAalA 422 (586)
T PLN02271 348 PFDYCDIVTSTTHKSLRGPRG-GIIFYRKGPKLRKQGMLLSHGDDN---SHYDFEEKINFAVFPSLQGGPHNNH-IAALA 422 (586)
T ss_pred CCcCCcEEEeCCcccCCCCCc-eEEEecccccccccCCcccccccc---ccHHHHHHhhcccCCccccChhHHH-HHHHH
Confidence 22689999999999988999 999988765432333322222100 000111100 000114566666655 99999
Q ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHH
Q 010538 341 HGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKL 420 (508)
Q Consensus 341 ~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 420 (508)
.++++......+...+++.++++.|.+.|.+. |++++...+. .+++.+++.... ++...+.+.
T Consensus 423 valkea~~~efk~Ya~QVv~NAkaLA~~L~~~-------G~~vv~ggTd-------nHlvLvDl~~~g---~~G~~ae~~ 485 (586)
T PLN02271 423 IALKQVATPEYKAYMQQVKKNAQALASALLRR-------KCRLVTGGTD-------NHLLLWDLTTLG---LTGKNYEKV 485 (586)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHC-------CCeEeeCCCC-------cceeeecCcccC---CCHHHHHHH
Confidence 99998776667899999999999999999886 8999876554 788888875431 344568999
Q ss_pred HhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCC----CHHHHHHHHHhhh
Q 010538 421 ASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMS----TFEDAKVNRCSSF 496 (508)
Q Consensus 421 L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~----t~eev~~l~~~~~ 496 (508)
|++.||.+.--..+.. + ....++.|||.....+ .++|++.+.+.|.
T Consensus 486 Le~~~I~~Nkn~iP~d---------------------------~---~~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~ 535 (586)
T PLN02271 486 CEMCHITLNKTAIFGD---------------------------N---GTISPGGVRIGTPAMTSRGCLESDFETIADFLL 535 (586)
T ss_pred HHHcCeEeccccCCCC---------------------------C---CCCCCCcccccCHHHHhcCCCcHHHHHHHHHHH
Confidence 9999999754321110 0 0123678999976554 5688888887777
Q ss_pred hhhh
Q 010538 497 DFVN 500 (508)
Q Consensus 497 ~~~~ 500 (508)
+.++
T Consensus 536 ~~~~ 539 (586)
T PLN02271 536 RAAQ 539 (586)
T ss_pred HHHh
Confidence 7665
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=218.12 Aligned_cols=307 Identities=14% Similarity=0.057 Sum_probs=206.7
Q ss_pred hhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchH-HHHHHHHhcCCeEEEEc
Q 010538 81 ATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVL-GIREYALSQGAAAFAID 159 (508)
Q Consensus 81 ~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~-~~~~~~~~~G~~v~~v~ 159 (508)
......+++++.+|++.|++. .+++++| +.|+.+++. + +++|++||++...|++.. .+...+++.|++++.++
T Consensus 51 ~~~p~~~~le~~lA~l~g~~~---~v~~~sG-~~ai~~~l~-~-l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~ 124 (390)
T PRK08064 51 SGNPTREALEDIIAELEGGTK---GFAFASG-MAAISTAFL-L-LSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVD 124 (390)
T ss_pred CCChhHHHHHHHHHHHhCCCC---eEEECCH-HHHHHHHHH-H-hCCCCEEEEccCccchHHHHHHHHHHHcCCEEEEEC
Confidence 344567889999999999874 4666555 568877775 3 578999999999998654 45566777899999998
Q ss_pred cCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCC
Q 010538 160 VEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPF 239 (508)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~ 239 (508)
.+ |+++++ +++ +++|++|++++++||||.+.|+++|.++|++
T Consensus 125 ~~--------------------d~~~l~--~~l------~~~tklV~l~~p~NptG~~~dl~~I~~la~~---------- 166 (390)
T PRK08064 125 MT--------------------NLEEVA--QNI------KPNTKLFYVETPSNPLLKVTDIRGVVKLAKA---------- 166 (390)
T ss_pred CC--------------------CHHHHH--Hhc------CCCceEEEEECCCCCCcEeccHHHHHHHHHH----------
Confidence 63 256667 444 5678999999999999999999999999998
Q ss_pred CCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEec-hhHhhhccccccCceEEecccchhhh
Q 010538 240 SKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRN-DAAKLLKNTYFSGGTVAASIADIDFV 316 (508)
Q Consensus 240 ~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~ 316 (508)
+|+++++|++++.+.....+ ++++|+++.|+||+++||.| .|++++++ ++.+.+++...+++.
T Consensus 167 --~g~~vvvD~a~~~~~~~~~~-~~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~----------- 232 (390)
T PRK08064 167 --IGCLTFVDNTFLTPLLQKPL-DLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGA----------- 232 (390)
T ss_pred --cCCEEEEECCCCcccccCch-hhCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCC-----------
Confidence 89999999999876543333 45899999999999887877 48888764 566666554322211
Q ss_pred hhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccC------C--CCCceEEEecCCC
Q 010538 317 KRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRH------E--NGADVCTIYGTYT 388 (508)
Q Consensus 317 ~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~------~--~~~~~~~~~~~~~ 388 (508)
..+....+.+...++ .+..+.++..+.+..+.+.|++.+. + ...|+.++...+.
T Consensus 233 -------------~~~~~~a~l~~~gl~-----tl~~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~ 294 (390)
T PRK08064 233 -------------VLGVQDCWLVLRGLK-----TLHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQA 294 (390)
T ss_pred -------------CCCHHHHHHHHcccC-----cHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhC
Confidence 111111111111222 2445666667777777777776531 0 0112222222211
Q ss_pred CCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCC---eeccCC------------CCCchHHHhhcCCChhhhhhh
Q 010538 389 SEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGI---QLRTGC------------FCNPGACAKYLGLSHSDLLSN 453 (508)
Q Consensus 389 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI---~v~~g~------------~~~~~~~~~~~~~~~s~~~~~ 453 (508)
...+++++|.+++. .++.+.+...++ .++.|. +|..+.. -...
T Consensus 295 -----~g~gg~~sf~~~~~-------~~~~~f~~~l~l~~~~~s~G~~~sl~~~~~~~~h~~~~~~----------~~~~ 352 (390)
T PRK08064 295 -----TSAGAVLSFTLQSE-------EAVRQFVSHVKLPVFAVSLGAVESILSYPAKMSHAAMPKE----------ERDE 352 (390)
T ss_pred -----CCcceEEEEEECCH-------HHHHHHHHhCCcceEcccCCCCcceeECCcccccccCCHH----------HHHh
Confidence 12478999999642 135667777677 667772 2222110 0111
Q ss_pred hhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 454 IEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
+| ..++.||+|++.++++|.++.+.++|.++.
T Consensus 353 ~g--------------i~~~liR~SvGle~~~dli~dl~~Al~~~~ 384 (390)
T PRK08064 353 RG--------------ITDGLLRLSVGLENVDDLIADFEQALSYVE 384 (390)
T ss_pred cC--------------CCCCeEEEEeccCCHHHHHHHHHHHHHhcc
Confidence 22 236899999999999999999999998753
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.4e-23 Score=209.88 Aligned_cols=320 Identities=18% Similarity=0.143 Sum_probs=214.4
Q ss_pred CCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHH
Q 010538 39 NGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALK 117 (508)
Q Consensus 39 ~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~ 117 (508)
.+.+.|+.+... .++|.+.+++.+. .......|. . ....+|+.+|++++++++ +|++|+|+++++.
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~~~~~~-~~~~~~Y~~----~------~~~~lr~~ia~~~~~~~~--~I~it~G~~~al~ 96 (357)
T PRK14809 30 DDLVKLSSNENPHGPSPAAVEAIREA-AERVHSYPK----A------SHADLTAALADRWDVSPE--QVWLANGGDGALD 96 (357)
T ss_pred cceeEecCCCCCCCCCHHHHHHHHHH-HhhhhcCCC----C------CHHHHHHHHHHHhCCCcc--eEEECCCHHHHHH
Confidence 468889887544 3466666655332 222211121 1 145789999999999998 9999999999999
Q ss_pred HHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCC
Q 010538 118 LVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP 197 (508)
Q Consensus 118 ~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~ 197 (508)
+++.++ .++|+.|+++...|+.+. ......|..++.+|++.+..+ ..+.+.+. +..
T Consensus 97 ~~~~~~-~~~gd~V~v~~P~y~~~~---~~~~~~g~~~~~~~l~~~~~~-------------~~~~~~~~--~~~----- 152 (357)
T PRK14809 97 YLARAM-LDPGDTVLVPDPGFAYYG---MSARYHHGEVREYPVSKADDF-------------EQTADTVL--DAY----- 152 (357)
T ss_pred HHHHHh-cCCCCEEEEeCCChHHHH---HHHHHcCCeEEEEecccCcCC-------------CcCHHHHH--Hhh-----
Confidence 999998 688999998886554333 334556899999988542222 11456665 221
Q ss_pred CCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCC---CCC-CCCCCcEEEEec
Q 010538 198 AGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQP---PDL-SKYPVDFVVMSF 273 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~---~d~-~~~~~D~~~~S~ 273 (508)
++++++++++++||||.++|.+++.++++. +++ +++||+|+++..-... +.. ...+.-+++.|+
T Consensus 153 --~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~---------~~~-~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~Sf 220 (357)
T PRK14809 153 --DGERIVYLTSPHNPTGSEIPLDEVEALAER---------TDE-ETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTF 220 (357)
T ss_pred --cCCcEEEEeCCCCCCCcCCCHHHHHHHHHh---------Ccc-CcEEEEechhhhccCCchhHHHHhhCCCEEEEecc
Confidence 356899999999999999999999999983 443 7899999998632111 111 111234788999
Q ss_pred cccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcCh
Q 010538 274 YKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTV 351 (508)
Q Consensus 274 ~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~ 351 (508)
+|.|| .+| +||+++++++++.+..... ....+.....+...+++. ...+
T Consensus 221 SK~~~-~~GlRiG~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~a~~~l~~--~~~~ 271 (357)
T PRK14809 221 SKAYG-LAGLRLGYAVVPEEWADAYARVNT--------------------------PFAASELACRAGLAALDD--DEHV 271 (357)
T ss_pred hhHhc-CcchhheeeecCHHHHHHHHHhCC--------------------------CCCCCHHHHHHHHHHhCC--HHHH
Confidence 99998 557 8999999988776654310 111222222222333321 1124
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccC
Q 010538 352 PAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTG 431 (508)
Q Consensus 352 ~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g 431 (508)
++..+.+++.++++.+.|... .+ ++. ++++++++++ ..++.+.|.++||.|++|
T Consensus 272 ~~~~~~~~~~r~~l~~~L~~~----------~~-~~~--------g~f~~~~~~~-------~~~~~~~l~~~gv~v~~g 325 (357)
T PRK14809 272 ERTVETARWAREYIREELDAP----------TW-ESA--------GNFVLAEVGD-------ASAVAEAAQERGVIVRDC 325 (357)
T ss_pred HHHHHHHHHHHHHHHHHhcCc----------cC-CCC--------CCEEEEECCC-------HHHHHHHHHHCCEEEEEC
Confidence 555666777777777777532 11 222 7888888742 234778888999999998
Q ss_pred CCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 432 CFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 432 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
..|.. ++++|+|++ +.++++.+++.|+++++
T Consensus 326 ~~f~~-----------------------------------~~~iRls~~---~~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 326 TSFGL-----------------------------------PECIRITCG---TREETERAVEVLNEVLA 356 (357)
T ss_pred ccCCC-----------------------------------CCeEEEecC---CHHHHHHHHHHHHHHhc
Confidence 65421 468999987 68999999999988753
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.9e-23 Score=218.06 Aligned_cols=373 Identities=11% Similarity=-0.032 Sum_probs=252.1
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCC-----CceEEEcCChH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMK-----DYKCIFTSGAT 113 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~-----~~~i~~t~g~t 113 (508)
...-||.+-..+..++.++..++...+ .+....+..++....+...+.+++++++|.+.. .-.-+||+|+|
T Consensus 129 ~hP~f~a~~~~~~~~~~~lgd~l~sa~----n~~~~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgS 204 (539)
T PLN02590 129 QSPSYFAYYASSTSVAGFLGEMLNAGL----SVVGFTWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGC 204 (539)
T ss_pred CCCCeeEeccCCCcHHHHHHHHHHHhc----ccccCCcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchH
Confidence 456788887777777777766655443 222233445566778888999999999999852 01478999999
Q ss_pred HHHHHHHhhcCC----------CCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC--ccCcccccccccccccccc
Q 010538 114 AALKLVGEAFPW----------SHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE--AVDNDGLSESLVTSTKISL 181 (508)
Q Consensus 114 ~al~~~~~~l~~----------~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~--~~~~~~l~~~~~~~~~~~~ 181 (508)
+|+..++.+... .+.-+|++++..|+|+....+++.-....++.||.+. .+.+
T Consensus 205 eAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~m--------------- 269 (539)
T PLN02590 205 EAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGM--------------- 269 (539)
T ss_pred HHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHHHHHHHcCCCcccEEEEeCCCCCCCcC---------------
Confidence 998765544211 1223667788889988777766522112588899874 3456
Q ss_pred chhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCC-
Q 010538 182 LPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPD- 260 (508)
Q Consensus 182 d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d- 260 (508)
|+++|+ ++|++....+..+.+|+.+...+.||.+.|+++|.++|++ +|+|++||+|++......+
T Consensus 270 d~~~L~--~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~------------~g~WlHVDaA~GG~al~~~~ 335 (539)
T PLN02590 270 PPESLE--EAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKK------------YGIWLHVDAAYAGNACICPE 335 (539)
T ss_pred CHHHHH--HHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHH------------hCCeEEEecchhhhhhcChh
Confidence 688888 7775433334567889999999999999999999999998 9999999999987553322
Q ss_pred C----CC-CCCcEEEEeccccccCCCcceEEEEechh--Hhhh--ccccccCceEEecccchhhhhhccCccccccCCCC
Q 010538 261 L----SK-YPVDFVVMSFYKIFGYPTGLGALIMRNDA--AKLL--KNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTA 331 (508)
Q Consensus 261 ~----~~-~~~D~~~~S~~K~~g~P~G~G~l~~~~~~--~~~l--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 331 (508)
. .. ..+|.++.++|||+..|.+||+++++++. ...+ .+.+..... .......++. ....+.+.
T Consensus 336 ~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~-~~~~~~~d~~------d~~i~lsR- 407 (539)
T PLN02590 336 YRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKV-SKKDTVVNYK------DWQISLSR- 407 (539)
T ss_pred hHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCHHHhCCcc-cccccCCCcc------ccCCCCCC-
Confidence 1 11 14799999999998889999999999753 1111 121111100 0000000010 11122222
Q ss_pred ChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCC-
Q 010538 332 SFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGS- 410 (508)
Q Consensus 332 ~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 410 (508)
.+ ....++.+++.+...|+.++.++..+++++|.+.|++. ++++++.++. .++|+|+.......
T Consensus 408 r~-raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~------~~fel~~~~~--------l~iVcFr~~~~~~~~ 472 (539)
T PLN02590 408 RF-RSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQD------PSFEVVTTRY--------FSLVCFRLAPVDGDE 472 (539)
T ss_pred ch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCeEEecCCc--------eEEEEEEecCCCCCH
Confidence 22 35677788888888899999999999999999999987 4799998765 79999998642111
Q ss_pred -ccC--HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecC-CCCCHH
Q 010538 411 -WFG--YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFG-YMSTFE 486 (508)
Q Consensus 411 -~~~--~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~-~~~t~e 486 (508)
..+ ...+.+.+.+.|...-+.... ....++|+++. +.+|++
T Consensus 473 ~~~~~ln~~l~~~l~~~G~~~vs~t~~-----------------------------------~g~~~lR~~i~n~~T~~~ 517 (539)
T PLN02590 473 DQCNERNRELLAAVNSTGKIFISHTAL-----------------------------------SGKFVLRFAVGAPLTEEK 517 (539)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeeEE-----------------------------------CCEEEEEEEecCCCCCHH
Confidence 011 134666666666664432210 01458999986 668899
Q ss_pred HHHHHHHhhhhhhhhh
Q 010538 487 DAKVNRCSSFDFVNFS 502 (508)
Q Consensus 487 ev~~l~~~~~~~~~~~ 502 (508)
||+.+++.|.+....+
T Consensus 518 dv~~~~~~i~~~a~~~ 533 (539)
T PLN02590 518 HVTEAWQIIQKHASKF 533 (539)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998875443
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.7e-23 Score=213.21 Aligned_cols=347 Identities=10% Similarity=0.049 Sum_probs=218.3
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCC--CCCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA--SMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~--~~~~~~i~~t~g~t~a 115 (508)
++.+.|..+.... +++..++++.+..... ....|........+.+.+.+.+.+..|. ++++ +|++|+|+++|
T Consensus 33 ~~~~~l~~g~p~~~~~~~~~~~~~~~~~~~----~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~-~I~it~G~~~a 107 (403)
T PRK08636 33 EDIIDFSMGNPDGPTPQHIIDKLCESAQKP----KTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPET-EVVATMGSKEG 107 (403)
T ss_pred CCEEEcCCcCCCCCCCHHHHHHHHHHhcCC----ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-eEEECCChHHH
Confidence 4566676654332 3555666655433211 1112221111223333344444443464 4431 59999999999
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC--ccCccccccccccccccccchh----hhhcC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE--AVDNDGLSESLVTSTKISLLPI----QRRKG 189 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~--~~~~~~l~~~~~~~~~~~~d~~----~l~~~ 189 (508)
+.+++.++ ..+|+.|++....|+.+... ++..|++++.+|++. ...+ |++ .++
T Consensus 108 l~~~~~~l-~~~gd~Vlv~~P~y~~~~~~---~~~~g~~~~~v~~~~~~~~~~---------------d~~~l~~~l~-- 166 (403)
T PRK08636 108 YVHLVQAI-TNPGDVAIVPDPAYPIHSQA---FILAGGNVHKMPLEYNEDFEL---------------DEDQFFENLE-- 166 (403)
T ss_pred HHHHHHHh-CCCCCEEEEcCCCCcchHHH---HHhcCCEEEEEeccccccCcc---------------ChhhhhhHHH--
Confidence 99999998 68899999998777666544 444699999998742 1223 333 334
Q ss_pred CCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCCCCCCCC-
Q 010538 190 ASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQPPDLSKY- 264 (508)
Q Consensus 190 ~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d~~~~- 264 (508)
+++++ ..++++++++++++||||.+++.+++.++++ +|++++++||+|.+++. +.....+..+
T Consensus 167 ~~~~~---~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~---------~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~ 234 (403)
T PRK08636 167 KALRE---SSPKPKYVVVNFPHNPTTATVEKSFYERLVA---------LAKKERFYIISDIAYADITFDGYKTPSILEVE 234 (403)
T ss_pred HHHhh---ccCCceEEEEeCCCCCCCccCCHHHHHHHHH---------HHHHcCcEEEEeccchhhccCCCCCCChhcCC
Confidence 33321 1357899999999999999999988888777 56679999999999763 2111222222
Q ss_pred ---CCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHH
Q 010538 265 ---PVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASI 339 (508)
Q Consensus 265 ---~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l 339 (508)
+..+++.|++|.||.| | +||++.++++++.+..... ....++....+.++
T Consensus 235 ~~~~~~i~~~S~SK~~~~~-GlRiG~iv~~~~li~~~~~~~~-----------------------~~~~~~~~~~q~~~- 289 (403)
T PRK08636 235 GAKDVAVESYTLSKSYNMA-GWRVGFVVGNKKLVGALKKIKS-----------------------WLDYGMFTPIQVAA- 289 (403)
T ss_pred CccccEEEEEecccccCCc-cceeeeeeCCHHHHHHHHHHHH-----------------------HhcccCChHHHHHH-
Confidence 2346688999999745 6 8999999888776554310 00112233333332
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHH
Q 010538 340 RHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEK 419 (508)
Q Consensus 340 ~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~ 419 (508)
..+++.. ...++++++.+.+.++.+.+.|++. ++.+..+.+ +.++|+++++.... .+..++..
T Consensus 290 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-------~~~~~~p~~--------g~~~~~~l~~~~~~-~~~~~l~~ 352 (403)
T PRK08636 290 TIALDGD-QSCVEEIRETYRKRRDVLIESFANA-------GWELQKPRA--------SMFVWAKIPEPARH-LGSLEFSK 352 (403)
T ss_pred HHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHC-------CCcccCCCc--------ceEEEEECCCccCC-CCHHHHHH
Confidence 2333311 1235677788888889999999875 455554443 78999998742110 12234554
Q ss_pred -HHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 420 -LASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 420 -~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
.++++||.+.+|..|... ..+++||+++ .+.++++..++.|+++
T Consensus 353 ~ll~~~gV~v~pg~~f~~~---------------------------------~~~~iRi~~~--~~~~~l~~~~~rl~~~ 397 (403)
T PRK08636 353 QLLTEAKVAVSPGIGFGEY---------------------------------GDEYVRIALI--ENENRIRQAARNIKKF 397 (403)
T ss_pred HHHHhCCEEEecchhhCcC---------------------------------CCCeEEEEec--CCHHHHHHHHHHHHHH
Confidence 566789999998755321 2579999997 5788888888888777
Q ss_pred hh
Q 010538 499 VN 500 (508)
Q Consensus 499 ~~ 500 (508)
++
T Consensus 398 l~ 399 (403)
T PRK08636 398 LK 399 (403)
T ss_pred HH
Confidence 64
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-23 Score=211.70 Aligned_cols=325 Identities=15% Similarity=0.087 Sum_probs=212.7
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC-c
Q 010538 85 IVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE-A 163 (508)
Q Consensus 85 ~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~-~ 163 (508)
...++++.+++++|.+ ++++++|+|+|+..++.++...+|++|+++...|+++...+ ...|++++.++.+. .
T Consensus 19 ~~~~~~~~la~~~~~~----~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~ 91 (352)
T cd00616 19 KVREFEKAFAEYLGVK----YAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANAI---LLLGATPVFVDIDPDT 91 (352)
T ss_pred HHHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHH---HHcCCeEEEEecCCCc
Confidence 4678899999999963 57888899999999999986678999999998888775443 45699999999875 4
Q ss_pred cCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCC
Q 010538 164 VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGR 243 (508)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g 243 (508)
..+ |+++++ +.+ ++++++|++++ ++|...|+++|.++|++ +|
T Consensus 92 ~~~---------------d~~~l~--~~i------~~~~~~v~~~~---~~G~~~~~~~i~~l~~~------------~~ 133 (352)
T cd00616 92 YNI---------------DPELIE--AAI------TPRTKAIIPVH---LYGNPADMDAIMAIAKR------------HG 133 (352)
T ss_pred CCc---------------CHHHHH--Hhc------CcCCeEEEEEC---CCCCcCCHHHHHHHHHH------------cC
Confidence 444 678888 544 46789998765 68999999999999998 89
Q ss_pred eEEEEeccccCCCCCCCCC-CCCCcEEEEecc--ccccCCCcceEEEEec-hhHhhhccccccCceEEecccchhhhhhc
Q 010538 244 WMVLIDAAKGCVTQPPDLS-KYPVDFVVMSFY--KIFGYPTGLGALIMRN-DAAKLLKNTYFSGGTVAASIADIDFVKRR 319 (508)
Q Consensus 244 ~~vivD~a~~~g~~~~d~~-~~~~D~~~~S~~--K~~g~P~G~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~ 319 (508)
+++++|++|++|....+.. ....|+.++|+| |+++++.| |+++.++ ++.+.+++...++..... ..+.
T Consensus 134 i~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~~K~~~~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--- 205 (352)
T cd00616 134 LPVIEDAAQALGATYKGRKVGTFGDAGAFSFHPTKNLTTGEG-GAVVTNDEELAERARLLRNHGRDRDR----FKYE--- 205 (352)
T ss_pred CeEEEECCCCCCCeECCEEcccCcceeEEcCCCCCCCcccCc-eEEEECCHHHHHHHHHHHHcCCCCCC----Cccc---
Confidence 9999999999987643211 112578888866 98874544 7777764 666656544322211000 0000
Q ss_pred cCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCce
Q 010538 320 QGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSM 399 (508)
Q Consensus 320 ~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (508)
.....+..+.+++ .+++.+....+++++.++.+++.+++++.|.++ ++++++.+.... ....++
T Consensus 206 -~~~~~~~~~~~~~------~aa~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~------~g~~~~~~~~~~---~~~~~~ 269 (352)
T cd00616 206 -HEILGYNYRLSEI------QAAIGLAQLEKLDEIIARRREIAERYKELLADL------PGIRLPDVPPGV---KHSYHL 269 (352)
T ss_pred -cceeeeccCcCHH------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCC------CCccCCCCCCCC---ceeeEE
Confidence 0000111112222 222222222346888889999999999999987 378887654310 113578
Q ss_pred EEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhc----CCChhhhhhhhhcCCccCCCccccCCCCCceE
Q 010538 400 VSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYL----GLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAI 475 (508)
Q Consensus 400 v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~----~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i 475 (508)
++|.+++..+ .+..++.+.|.++||.++. .|.+....... +.+.+.+..+ .....+.+
T Consensus 270 ~~~~~~~~~~--~~~~~v~~~L~~~gI~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a--------------~~~~~~~l 331 (352)
T cd00616 270 YVIRLDPEAG--ESRDELIEALKEAGIETRV--HYPPLHHQPPYKKLLGYPPGDLPNA--------------EDLAERVL 331 (352)
T ss_pred EEEEECCcCC--CCHHHHHHHHHHCCCCeee--ecCccccCHhhhhccCCCcCCChHH--------------HHHHhCeE
Confidence 8888864101 3456799999999997653 45442210000 0000000000 00124789
Q ss_pred EEecCCCCCHHHHHHHHHhhh
Q 010538 476 RVSFGYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 476 Ris~~~~~t~eev~~l~~~~~ 496 (508)
|+++|.++|.+||++++++|+
T Consensus 332 ~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 332 SLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred EccCCCCCCHHHHHHHHHHhC
Confidence 999999999999999998864
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.3e-23 Score=212.22 Aligned_cols=348 Identities=11% Similarity=-0.009 Sum_probs=219.3
Q ss_pred CCCeeeeCCCCCCC-CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC--CCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGATLY-SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS--MKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~--~~~~~i~~t~g~t~a 115 (508)
.+.+.|..+..... ++...+++.+.+ .. ....|.......++.+.+.+.+.+.+|.+ +++ +|++|+|+++|
T Consensus 24 ~~~i~l~~g~p~~~~~~~~~~~~~~~~-~~----~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~-~i~~t~G~~~a 97 (387)
T PRK07777 24 TGAVNLGQGFPDEDGPPEMLEAAQEAI-AG----GVNQYPPGPGIPELRAAIAAQRRRRYGLEYDPDT-EVLVTVGATEA 97 (387)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHH-hc----CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-cEEEeCCcHHH
Confidence 45666666553322 344444433322 21 11222222222334444444444456754 431 59999999999
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPER 195 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~ 195 (508)
+.+++.++ ..+|+.|++....|+++..+ ++..|.+++.++++..+.-. ..|+++++ +++
T Consensus 98 l~~~~~~~-~~~gd~vli~~p~y~~~~~~---~~~~g~~~~~~~~~~~~~~~------------~~d~~~l~--~~~--- 156 (387)
T PRK07777 98 IAAAVLGL-VEPGDEVLLIEPYYDSYAAV---IAMAGAHRVPVPLVPDGRGF------------ALDLDALR--AAV--- 156 (387)
T ss_pred HHHHHHHh-cCCCCEEEEeCCCchhhHHH---HHHCCCEEEEeecCCccCCC------------cCCHHHHH--Hhc---
Confidence 99999888 57889999888777666544 44468999999887542110 11688888 554
Q ss_pred CCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCCCCCCC----CCCc
Q 010538 196 DPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQPPDLSK----YPVD 267 (508)
Q Consensus 196 ~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d~~~----~~~D 267 (508)
.+++++|++++++||||.+++.+++.++++ +|+++++++|+|++++. +.....+.. .+.+
T Consensus 157 ---~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~---------~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~ 224 (387)
T PRK07777 157 ---TPRTRALIVNSPHNPTGTVLTAAELAAIAE---------LAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERT 224 (387)
T ss_pred ---CcccEEEEEcCCCCCCCccCCHHHHHHHHH---------HHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcE
Confidence 356899999999999999999666655555 44459999999999863 221122221 2467
Q ss_pred EEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHH
Q 010538 268 FVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNL 345 (508)
Q Consensus 268 ~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~ 345 (508)
+++.|++|.|| .+| +|++++++++++.+...... .....+.+...++..++..
T Consensus 225 i~~~S~SK~~g-~~GlRiG~~~~~~~l~~~~~~~~~~------------------------~~~~~~~~~q~~~~~~l~~ 279 (387)
T PRK07777 225 VTISSAAKTFN-VTGWKIGWACGPAPLIAAVRAAKQY------------------------LTYVGGAPFQPAVAHALDH 279 (387)
T ss_pred EEEeechhhcc-CcCceeEEEecCHHHHHHHHHHHhh------------------------cccCCCCHHHHHHHHHHhC
Confidence 99999999998 447 79999998887665533110 0011122223333334432
Q ss_pred HHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHH-hhC
Q 010538 346 INSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLA-SLS 424 (508)
Q Consensus 346 ~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L-~~~ 424 (508)
. +..++.+++++.+.++++.+.|++. ++++..+.+ +.+++++++.... .+..++.+.| +++
T Consensus 280 ~-~~~~~~~~~~~~~~~~~l~~~L~~~-------~~~~~~~~g--------~~~~~~~~~~~~~--~~~~~~~~~l~~~~ 341 (387)
T PRK07777 280 E-DAWVAALRDSLQAKRDRLAAGLAEA-------GFEVHDSAG--------TYFLCADPRPLGY--DDGTEFCRALPERV 341 (387)
T ss_pred C-cHHHHHHHHHHHHHHHHHHHHHHhC-------CCCccCCCc--------ceEEEecccccCC--CCHHHHHHHHHHhC
Confidence 1 1225677788899999999999875 566554432 6778778753211 1234577777 578
Q ss_pred CCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 425 GIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 425 gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
||.|.+|..|.... ....+++|+|++. ..++++..++.|.+++.
T Consensus 342 gv~v~pg~~f~~~~------------------------------~~~~~~~Ri~~~~--~~~~l~~~l~~l~~~~~ 385 (387)
T PRK07777 342 GVAAIPMSVFYDPA------------------------------DAWNHLVRFAFCK--RDDTLDEAIRRLRALRG 385 (387)
T ss_pred CEEEeCchHhCCCC------------------------------cCCCCeEEEEecC--CHHHHHHHHHHHHHHhc
Confidence 99999987553211 0125689999985 68999999998887653
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-23 Score=215.10 Aligned_cols=338 Identities=13% Similarity=0.069 Sum_probs=215.2
Q ss_pred CCCeeeeCCCCCCC-CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc----C----CCCCCceEEEc
Q 010538 39 NGTVYLDHAGATLY-SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF----N----ASMKDYKCIFT 109 (508)
Q Consensus 39 ~~~iyld~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~----~~~~~~~i~~t 109 (508)
.+.+.|+.+-.... ++.+.+++.+ ....... |.... ...++|+.+|+++ + +++++ +|++|
T Consensus 28 ~~~i~l~~~~p~~~~~~~~~~a~~~-~~~~~~~-----Y~~~~----G~~~lr~aia~~~~~~~~~~~~~~~~~-~i~it 96 (393)
T TIGR03538 28 KPPIALSIGEPKHPTPAFVLEALRE-NLHGLST-----YPTTK----GLPELRQAIARWLERRFDLPTGVDPER-HVLPV 96 (393)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHH-HhhccCC-----CCCCC----CCHHHHHHHHHHHHHhhCCcccCCCCc-eEEEC
Confidence 56888887765544 4444455433 3222111 11111 1344566666665 3 45531 69999
Q ss_pred CChHHHHHHHHhhcCCCCCCe--EEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhh
Q 010538 110 SGATAALKLVGEAFPWSHQSS--YMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRR 187 (508)
Q Consensus 110 ~g~t~al~~~~~~l~~~~g~~--vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~ 187 (508)
+|+++++.+++.++ ..+|+. |+++...|+.+... ++..|++++.+|++.+..+ .+|++.++
T Consensus 97 ~Ga~~al~~~~~~l-~~~gd~~~vlv~~P~y~~~~~~---~~~~g~~~~~v~~~~~~~~-------------~~d~~~l~ 159 (393)
T TIGR03538 97 NGTREALFAFAQAV-INPGQAPLVVMPNPFYQIYEGA---ALLAGAEPYFLNCTAENGF-------------LPDFDAVP 159 (393)
T ss_pred CCcHHHHHHHHHHH-cCCCCcceEEecCCCCcchHHH---HHhcCCeEEEeeccccCCC-------------CCCHHHHH
Confidence 99999999999998 567765 88777666655443 4556999999998643322 12577777
Q ss_pred cCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC-----CCCCC-
Q 010538 188 KGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT-----QPPDL- 261 (508)
Q Consensus 188 ~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~-----~~~d~- 261 (508)
+++ .++++++++++++||||.+++.+++.++++ +|++++++||+|+++..-. .+.+.
T Consensus 160 --~~~------~~~~k~i~l~~p~NPtG~~~s~~~~~~l~~---------~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~ 222 (393)
T TIGR03538 160 --ESV------WRRCQLLFVCSPGNPTGAVLSLDTLKKLIE---------LADQYGFIIASDECYSELYFDEGNPPAGLL 222 (393)
T ss_pred --HHH------hhcceEEEEeCCCCCcCcccCHHHHHHHHH---------HHHHCCEEEEECcchhhcccCCCCCCcCHH
Confidence 443 347899999999999999999877777766 4556999999999986321 11111
Q ss_pred ---CC-----CCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCC
Q 010538 262 ---SK-----YPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTA 331 (508)
Q Consensus 262 ---~~-----~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 331 (508)
.. .+--+++.|++|.|+.| | +||++.++++++.+..... ....+.
T Consensus 223 ~~~~~~~~~~~~~vi~i~S~SK~~~~~-GlRvG~~i~~~~l~~~~~~~~~------------------------~~~~~~ 277 (393)
T TIGR03538 223 QAAAQLGRDDFRRCLVFHSLSKRSNLP-GLRSGFVAGDAEILKAFLRYRT------------------------YHGCAM 277 (393)
T ss_pred HhcccccccccccEEEEecchhhcCCc-ccceEEEecCHHHHHHHHHHHH------------------------hhccCc
Confidence 11 12238899999987734 6 8999999888776553310 011122
Q ss_pred ChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCc
Q 010538 332 SFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSW 411 (508)
Q Consensus 332 ~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 411 (508)
+.....++.+++.. +..++..++++++.++.+.+.|++. +.+..|.+ +.++|++++ .+.
T Consensus 278 ~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~L~~~--------~~~~~p~g--------g~f~~~~~~-~~~-- 336 (393)
T TIGR03538 278 PIPTQLASIAAWND--EQHVRENRALYREKFAAVLEILGQV--------LDLELPDA--------GFYLWPKVP-GDD-- 336 (393)
T ss_pred CHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHhh--------CcccCCCe--------eEEEEEECC-CCH--
Confidence 33333333333321 2236677788888888888888764 22333332 789999987 222
Q ss_pred cCHHHHHHHH-hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHH
Q 010538 412 FGYREVEKLA-SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKV 490 (508)
Q Consensus 412 ~~~~~l~~~L-~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~ 490 (508)
.++.+.| +++||.+.+|..|..... | +....+++|||++. +.++++.
T Consensus 337 ---~~~~~~l~~~~gV~v~pg~~f~~~~~--------------------~-------~~~~~~~~Ris~~~--~~~~l~~ 384 (393)
T TIGR03538 337 ---EAFARALYEEENVTVLPGRFLAREAE--------------------G-------VNPGEGRVRIALVA--PLEECVE 384 (393)
T ss_pred ---HHHHHHHHHHCCEEEeCCcccccccc--------------------C-------CCCCCCEEEEEecC--CHHHHHH
Confidence 2366555 678999999986542100 0 00125789999985 6899999
Q ss_pred HHHhhhhhh
Q 010538 491 NRCSSFDFV 499 (508)
Q Consensus 491 l~~~~~~~~ 499 (508)
.++.|.+++
T Consensus 385 ~l~~l~~~~ 393 (393)
T TIGR03538 385 AAERIRSFI 393 (393)
T ss_pred HHHHHHHhC
Confidence 998887753
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.3e-23 Score=214.00 Aligned_cols=335 Identities=13% Similarity=0.074 Sum_probs=218.0
Q ss_pred CCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC------CCCCCceEEEcCC
Q 010538 39 NGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN------ASMKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------~~~~~~~i~~t~g 111 (508)
++.+.|..+... ++++.+.+++ ..+......+. ..|.. ......+|+.++++++ ++++ +|++|+|
T Consensus 33 ~~~~~l~~g~p~~~~~~~v~~a~-~~~~~~~~~~~-~~y~~----~~g~~~lr~~ia~~l~~~~~~~~~~~--~i~~t~G 104 (394)
T PRK06836 33 DNVFDFSLGNPSVPPPAAVKEAL-RELAEEEDPGL-HGYMP----NAGYPEVREAIAESLNRRFGTPLTAD--HIVMTCG 104 (394)
T ss_pred CCeEEecCcCCCCCCCHHHHHHH-HHHHhcCCcCc-ccCCC----CCCCHHHHHHHHHHHHHHhCCCCCcC--cEEEeCC
Confidence 456777665543 3355555554 33433211111 11211 1234556777777764 5677 8999999
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc-cCccccccccccccccccchhhhhcCC
Q 010538 112 ATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA-VDNDGLSESLVTSTKISLLPIQRRKGA 190 (508)
Q Consensus 112 ~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~-~~~~~l~~~~~~~~~~~~d~~~l~~~~ 190 (508)
+++++.+++.++ ..+|+.|+++...|+.+ ...++..|++++.+|.+.+ ..+ |+++++ +
T Consensus 105 ~~~al~~~~~~l-~~~gd~Vli~~p~~~~~---~~~~~~~g~~v~~v~~~~~~~~~---------------d~~~l~--~ 163 (394)
T PRK06836 105 AAGALNVALKAI-LNPGDEVIVFAPYFVEY---RFYVDNHGGKLVVVPTDTDTFQP---------------DLDALE--A 163 (394)
T ss_pred hHHHHHHHHHHh-cCCCCEEEEcCCCCccH---HHHHHHcCCEEEEEecCCccCcC---------------CHHHHH--h
Confidence 999999999998 67899999888655554 4455667999999998754 334 688888 5
Q ss_pred CCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCC------CCeEEEEeccccC----CCCCCC
Q 010538 191 SFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK------GRWMVLIDAAKGC----VTQPPD 260 (508)
Q Consensus 191 ~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~------~g~~vivD~a~~~----g~~~~d 260 (508)
++ ++++++|++++++||||.++|.+++.++++ +|++ ||+++++|+++.. +.....
T Consensus 164 ~~------~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~---------la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~ 228 (394)
T PRK06836 164 AI------TPKTKAVIINSPNNPTGVVYSEETLKALAA---------LLEEKSKEYGRPIYLISDEPYREIVYDGAEVPY 228 (394)
T ss_pred hc------CcCceEEEEeCCCCCCCcCCCHHHHHHHHH---------HHHHhhhccCCCeEEEEeccccccccCCCCCCC
Confidence 55 457899999999999999999998888877 5666 7999999999863 111111
Q ss_pred -CCCCCCcEEEEeccccccCCCc--ceEEEEechhHhh--hccccccCceEEecccchhhhhhccCccccccCCCCChhH
Q 010538 261 -LSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKL--LKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLS 335 (508)
Q Consensus 261 -~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~--l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~ 335 (508)
....+..+++.|++|.+|.| | +||++++++..+. +....... .+.......+...
T Consensus 229 ~~~~~~~~i~~~S~SK~~~~p-GlRiG~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~ 288 (394)
T PRK06836 229 IFKYYDNSIVVYSFSKSLSLP-GERIGYIAVNPEMEDADDLVAALVFA-------------------NRILGFVNAPALM 288 (394)
T ss_pred hHHccCcEEEEecchhhccCc-ceeeEEEecCHHHhhhHHHHHHHHHH-------------------hhccccccCCHHH
Confidence 22334568899999999844 6 8999998765321 11100000 0000000112222
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHH
Q 010538 336 IASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYR 415 (508)
Q Consensus 336 ~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 415 (508)
..++ ..++.+ + ...+++.+.++.+.+.|++. ++.+..+.+ +.++|++++.. +..
T Consensus 289 q~~~---~~~l~~-~--~~~~~~~~~r~~l~~~L~~~-------g~~~~~~~g--------g~~~~~~~~~~-----~~~ 342 (394)
T PRK06836 289 QRVV---AKCLDA-T--VDVSIYKRNRDLLYDGLTEL-------GFECVKPQG--------AFYLFPKSPEE-----DDV 342 (394)
T ss_pred HHHH---HHHhCC-h--HHHHHHHHHHHHHHHHHHhC-------CCEeecCCc--------eEEEEEeCCCC-----CHH
Confidence 2222 223222 1 12456677788888888775 566654443 67788777653 234
Q ss_pred HHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhh
Q 010538 416 EVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSS 495 (508)
Q Consensus 416 ~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~ 495 (508)
++.+.|.++||.+.+|..|.. ++++||+++ .++++++..++.|
T Consensus 343 ~~~~~l~~~gv~v~~g~~f~~-----------------------------------~~~iRi~~~--~~~~~~~~~i~~l 385 (394)
T PRK06836 343 AFCEKAKKHNLLLVPGSGFGC-----------------------------------PGYFRLSYC--VDTETIERSLPAF 385 (394)
T ss_pred HHHHHHHhCCEEEECchhcCC-----------------------------------CCeEEEEec--CCHHHHHHHHHHH
Confidence 577888999999999864421 478999998 4799999999999
Q ss_pred hhhhh
Q 010538 496 FDFVN 500 (508)
Q Consensus 496 ~~~~~ 500 (508)
+++++
T Consensus 386 ~~~l~ 390 (394)
T PRK06836 386 EKLAK 390 (394)
T ss_pred HHHHH
Confidence 88764
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.9e-23 Score=215.42 Aligned_cols=340 Identities=12% Similarity=0.055 Sum_probs=219.0
Q ss_pred CCCeeeeCCCCC-----CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC------------CCC
Q 010538 39 NGTVYLDHAGAT-----LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN------------ASM 101 (508)
Q Consensus 39 ~~~iyld~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------------~~~ 101 (508)
++.+-|..+... .+++.+.+++.+.+ .. .....|... .....+|+.+|++++ +++
T Consensus 33 ~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~-~~---~~~~~Y~~~----~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~ 104 (412)
T PTZ00433 33 KSIIKLSVGDPTLDGNLLTPAIQTKALVEAV-DS---QECNGYPPT----VGSPEAREAVATYWRNSFVHKESLKSTIKK 104 (412)
T ss_pred CCeeecCCcCCCCcCCCCCCHHHHHHHHHHh-hc---CCCCCCCCC----CCcHHHHHHHHHHHHhhccccccccCCCCh
Confidence 677777776654 34666666554332 21 111122211 123556777777665 567
Q ss_pred CCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc--cCcccccccccccccc
Q 010538 102 KDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA--VDNDGLSESLVTSTKI 179 (508)
Q Consensus 102 ~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~--~~~~~l~~~~~~~~~~ 179 (508)
+ +|++|+|+++++.+++.++ ..+|++|+++...|+.+.. .++..|++++.+|++.+ ..+
T Consensus 105 ~--~i~it~G~~~al~~~~~~~-~~~gd~vlv~~P~y~~~~~---~~~~~g~~~~~i~~~~~~~~~~------------- 165 (412)
T PTZ00433 105 D--NVVLCSGVSHAILMALTAL-CDEGDNILVPAPGFPHYET---VCKAYGIEMRFYNCRPEKDWEA------------- 165 (412)
T ss_pred h--hEEEeCChHHHHHHHHHHh-cCCCCEEEEccCCcccHHH---HHHHcCCEEEEEecCccccCcC-------------
Confidence 7 8999999999999999998 6789999999877766544 45557999999998642 233
Q ss_pred ccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCC----
Q 010538 180 SLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCV---- 255 (508)
Q Consensus 180 ~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g---- 255 (508)
|+++++ +++ .+++++|++++++||||.+++.+++.++++ +|+++|++||+|+++..-
T Consensus 166 --d~~~l~--~~~------~~~~~~i~~~~p~NPtG~~~s~~~~~~l~~---------~a~~~~~~ii~De~y~~~~~~~ 226 (412)
T PTZ00433 166 --DLDEIR--RLV------DDRTKALIMTNPSNPCGSNFSRKHVEDIIR---------LCEELRLPLISDEIYAGMVFNG 226 (412)
T ss_pred --CHHHHH--HHh------ccCceEEEEeCCCCCCCcccCHHHHHHHHH---------HHHHcCCeEEEeccccccccCC
Confidence 678887 444 346899999999999999999877766665 455599999999998631
Q ss_pred CCCCCCCCC---CCcEEEEeccccccCCCc--ceEEEEe------chhHhhhccccccCceEEecccchhhhhhccCccc
Q 010538 256 TQPPDLSKY---PVDFVVMSFYKIFGYPTG--LGALIMR------NDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEE 324 (508)
Q Consensus 256 ~~~~d~~~~---~~D~~~~S~~K~~g~P~G--~G~l~~~------~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 324 (508)
....++... ..-+++.|++|.||.| | +||+++. +++++.+....
T Consensus 227 ~~~~~~~~~~~~~~~i~~~SfSK~~~~p-GlRlG~~i~~~p~~~~~~~~~~~~~~~------------------------ 281 (412)
T PTZ00433 227 ATFTSVADFDTTVPRVILGGTAKNLVVP-GWRLGWLLLVDPHGNGGDFLDGMKRLG------------------------ 281 (412)
T ss_pred CCccchhhccCCCceEEEccchhhcCCC-CeeEEEEEEeCCcccHHHHHHHHHHHh------------------------
Confidence 111122211 1237889999999835 7 8999972 23443332210
Q ss_pred cccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEe
Q 010538 325 LFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNL 404 (508)
Q Consensus 325 ~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 404 (508)
......+.....++..++..-.+..++++++++++.++.+.+.|++.. ++.+..|.+ +.++++++
T Consensus 282 -~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~------~~~~~~p~g--------g~f~~~~l 346 (412)
T PTZ00433 282 -MLVCGPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGECI------GLSPTMPRG--------SMFLMSRL 346 (412)
T ss_pred -hccCCCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCC------CCcccCCCe--------eEEEEEEe
Confidence 001122333333333343310112367778888888999999998752 455554443 78889888
Q ss_pred eCCCC-CccCHHHHHHHH-hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC
Q 010538 405 KRPDG-SWFGYREVEKLA-SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM 482 (508)
Q Consensus 405 ~~~~~-~~~~~~~l~~~L-~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 482 (508)
+...- ...+..++.+.| +++||.+++|..|.. .+++|+|++.
T Consensus 347 ~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~-----------------------------------~~~iRis~~~- 390 (412)
T PTZ00433 347 DLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHM-----------------------------------PGFTRLTISR- 390 (412)
T ss_pred chhhcCCCCCHHHHHHHHHHhcCEEEeCccccCC-----------------------------------CCeEEEEecC-
Confidence 64100 001223456665 468999999875421 4789999985
Q ss_pred CCHHHHHHHHHhhhhhhhh
Q 010538 483 STFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 483 ~t~eev~~l~~~~~~~~~~ 501 (508)
..++++..++.+.++++-
T Consensus 391 -~~e~l~~al~~l~~~~~~ 408 (412)
T PTZ00433 391 -PVEVLREAVERIKAFCER 408 (412)
T ss_pred -CHHHHHHHHHHHHHHHHH
Confidence 488899999988887754
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-22 Score=215.19 Aligned_cols=352 Identities=12% Similarity=0.065 Sum_probs=235.9
Q ss_pred CCeeeeCCCCCC----CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHH
Q 010538 40 GTVYLDHAGATL----YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAA 115 (508)
Q Consensus 40 ~~iyld~~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~a 115 (508)
+.-|+|.++... .+|.+.+++.+.+. . ++.........+...+...+++++++++++.+ + .|++++|++ +
T Consensus 108 G~~~id~~s~~~lgl~~~~~i~ea~~~al~-~-~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~~-~--~i~~s~G~~-a 181 (481)
T PLN02822 108 GKDVVNFASANYLGLIGNEKIKESCTSALE-K-YGVGSCGPRGFYGTIDVHLDCETKIAKFLGTP-D--SILYSYGLS-T 181 (481)
T ss_pred CceEEEeECCCcCCCCCCHHHHHHHHHHHH-H-hCCCCcccCccccCHHHHHHHHHHHHHHhCCC-C--EEEECCHHH-H
Confidence 444555543322 47778887766543 2 22111111111235677889999999999975 4 699998877 6
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPER 195 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~ 195 (508)
+..++.++ .++|+.|++....|.++.....+ .|.+++.++.++...+. .++++++ +..
T Consensus 182 ~~sai~a~-~~~gd~Ii~d~~~H~s~~~~~~l---s~~~~~~~~~nd~~~l~-------------~~l~~~~--~~~--- 239 (481)
T PLN02822 182 IFSVIPAF-CKKGDIIVADEGVHWGIQNGLYL---SRSTIVYFKHNDMESLR-------------NTLEKLT--AEN--- 239 (481)
T ss_pred HHHHHHHh-CCCCCEEEEeCCccHHHHHHHHH---cCCeEEEECCCCHHHHH-------------HHHHHHh--hhh---
Confidence 78888888 67899999998888877655544 37788888876422221 1234443 111
Q ss_pred CCCCCCc-eEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCC---------CCCCCCC
Q 010538 196 DPAGDAY-NLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQP---------PDLSKYP 265 (508)
Q Consensus 196 ~~~~~~t-~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~---------~d~~~~~ 265 (508)
...+++ ++|++..+++++|.+.|+++|.++|++ ||+++++|++|++|... .++....
T Consensus 240 -~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~l~~k------------~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~ 306 (481)
T PLN02822 240 -KRKKKLRRYIVVEAIYQNSGQIAPLDEIVRLKEK------------YRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEK 306 (481)
T ss_pred -cccCCCcEEEEEecCCCCCCCccCHHHHHHHHHH------------cCCEEEEECCccccccCCCCCChHHHcCCCCCC
Confidence 012344 799999999999999999999999998 99999999999966532 2232235
Q ss_pred CcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHH
Q 010538 266 VDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNL 345 (508)
Q Consensus 266 ~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~ 345 (508)
+|++++|++|.+| +.| |+++++++.++.++.. +. ...| .++.+....++..++++.
T Consensus 307 ~dii~~s~sKalg-~~G-G~i~g~~~ii~~~~~~--~~-------------------~~~f-sa~lPp~~~~Aa~~aL~~ 362 (481)
T PLN02822 307 IDIITAAMGHALA-TEG-GFCTGSARVVDHQRLS--SS-------------------GYVF-SASLPPYLASAAITAIDV 362 (481)
T ss_pred CeEEEecchhhhh-hCC-eEEEcCHHHHHHHHhc--CC-------------------ceee-ccccCHHHHHHHHHHHHH
Confidence 7999999999999 777 9999999887765532 11 1112 222233334444457877
Q ss_pred HHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCcc-C---HHHHHHHH
Q 010538 346 INSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWF-G---YREVEKLA 421 (508)
Q Consensus 346 ~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~---~~~l~~~L 421 (508)
+.. ..++.++++++++++++.|++.. ++.+..+.. ++++++.+++..+..- + ..++.+.|
T Consensus 363 l~~--~~~~~~~l~~~~~~l~~~L~~~~------g~~~~~~~~--------spi~~l~l~~~~~~~~~~~~~~~~~~~~L 426 (481)
T PLN02822 363 LED--NPSVLAKLKENIALLHKGLSDIP------GLSIGSNTL--------SPIVFLHLEKSTGSAKEDLSLLEHIADRM 426 (481)
T ss_pred HHh--CHHHHHHHHHHHHHHHHHHHhcC------CcccCCCCC--------CCEEEEEeCCCcccccchHHHHHHHHHHH
Confidence 654 36788999999999999998863 566654443 7899898864311000 1 13456665
Q ss_pred -hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 422 -SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 422 -~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
.++||.+.++.....+. ...+..+|++++..+|.+||+++++.|+++++
T Consensus 427 l~e~GV~v~~~~~~~~~~------------------------------~~~~~~lRi~is~~~t~edI~~~~~~l~~~~~ 476 (481)
T PLN02822 427 LKEDSVLVVVSKRSTLDK------------------------------CRLPVGIRLFVSAGHTESDILKASESLKRVAA 476 (481)
T ss_pred HhcCCEEEEeeCCCCcCC------------------------------CCCCCcEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 58899998764321110 00135799999999999999999999998776
Q ss_pred hh
Q 010538 501 FS 502 (508)
Q Consensus 501 ~~ 502 (508)
.+
T Consensus 477 ~~ 478 (481)
T PLN02822 477 SV 478 (481)
T ss_pred HH
Confidence 53
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.8e-23 Score=214.29 Aligned_cols=339 Identities=12% Similarity=0.053 Sum_probs=220.8
Q ss_pred CCCeeeeCCCCC-----CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC------CCCCCceEE
Q 010538 39 NGTVYLDHAGAT-----LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN------ASMKDYKCI 107 (508)
Q Consensus 39 ~~~iyld~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------~~~~~~~i~ 107 (508)
++.+.|.-+-.. ++++.+.+++.+.+... ....|... ....++|+.++++++ ++++ +|+
T Consensus 31 ~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~Y~~~----~G~~~lr~~ia~~~~~~~g~~~~~~--~i~ 100 (409)
T PLN02656 31 KRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSN----KFNGYAPT----VGLPQARRAIAEYLSRDLPYKLSLD--DVF 100 (409)
T ss_pred CeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcC----CCCCCCCC----CCCHHHHHHHHHHHHHhcCCCCCcc--cEE
Confidence 578888877654 44666666654433221 11122111 113455666666653 5677 899
Q ss_pred EcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc-c-Cccccccccccccccccchhh
Q 010538 108 FTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA-V-DNDGLSESLVTSTKISLLPIQ 185 (508)
Q Consensus 108 ~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~-~-~~~~l~~~~~~~~~~~~d~~~ 185 (508)
+|+|+++|+.+++.++ ..+|++|+++...|+.+.... +..|++++.+|++.+ + .+ |++.
T Consensus 101 ~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~---~~~g~~~~~i~~~~~~~~~~---------------d~~~ 161 (409)
T PLN02656 101 ITSGCTQAIDVALSML-ARPGANILLPRPGFPIYELCA---AFRHLEVRYVDLLPEKGWEV---------------DLDA 161 (409)
T ss_pred EeCChHHHHHHHHHHH-hCCCCeEEEeCCCCCcHHHHH---HHcCCEEEEEeCCCcCCCCC---------------CHHH
Confidence 9999999999999998 688999999998887665443 336999999998532 2 23 6788
Q ss_pred hhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCCCCC
Q 010538 186 RRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQPPDL 261 (508)
Q Consensus 186 l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d~ 261 (508)
++ +++ +++++++++++++||||.+++.+++.++++ +|+++|++||+|++++. +....++
T Consensus 162 l~--~~~------~~~~~~v~l~~P~NPtG~~~s~~~~~~i~~---------~a~~~~~~ii~De~y~~~~~~~~~~~~~ 224 (409)
T PLN02656 162 VE--ALA------DQNTVALVIINPGNPCGNVYSYQHLKKIAE---------TAEKLKILVIADEVYGHLAFGSNPFVPM 224 (409)
T ss_pred HH--HHh------ccCceEEEEECCCCCCCCCCCHHHHHHHHH---------HHHHcCCEEEEehhhhhcccCCCCcccH
Confidence 87 444 457899999999999999998777766665 45569999999999863 1111222
Q ss_pred C---CCCCcEEEEeccccccCCCc--ceEEEEe--------chhHhhhccccccCceEEecccchhhhhhccCccccccC
Q 010538 262 S---KYPVDFVVMSFYKIFGYPTG--LGALIMR--------NDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFED 328 (508)
Q Consensus 262 ~---~~~~D~~~~S~~K~~g~P~G--~G~l~~~--------~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (508)
. ....-+++.|++|.|+.| | +||++++ +++++.+.... . . .
T Consensus 225 ~~~~~~~~vi~~~SfSK~f~~p-GlRiG~~i~~~~~~~~~~~~~~~~~~~~~-----------------------~-~-~ 278 (409)
T PLN02656 225 GVFGSIVPVLTLGSLSKRWIVP-GWRLGWFVTTDPSGSFRDPKIVERIKKYF-----------------------D-I-L 278 (409)
T ss_pred HHhcccCcEEEEcccchhccCc-ceeEEEEEEeCcccccccHHHHHHHHHHH-----------------------h-h-h
Confidence 1 112347889999998845 7 8999985 34544443220 0 0 1
Q ss_pred CCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEe-cCCCCCcccCCCCceEEEEeeCC
Q 010538 329 GTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIY-GTYTSEVSYHDTGSMVSFNLKRP 407 (508)
Q Consensus 329 gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~ 407 (508)
+.++.....++..+++...+..+++.++++++.++++.+.|++++ ++... .|.+ +.++|++++..
T Consensus 279 ~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~------~~~~~~~p~g--------g~~~w~~l~~~ 344 (409)
T PLN02656 279 GGPATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKEIP------CITCPHKPEG--------SMAVMVKLNLS 344 (409)
T ss_pred cCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCC------CCcCCcCCCe--------EEEEEEecchh
Confidence 223444444444455421112367777888888899999998762 33222 2322 67888887531
Q ss_pred CCCcc-CH-HHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCH
Q 010538 408 DGSWF-GY-REVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTF 485 (508)
Q Consensus 408 ~~~~~-~~-~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ 485 (508)
.-..+ +. ..+.+.+.++||.+.+|..|.. .+++|||++. +.
T Consensus 345 ~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~-----------------------------------~~~iRi~~~~--~~ 387 (409)
T PLN02656 345 LLEDISDDIDFCFKLAREESVIILPGTAVGL-----------------------------------KNWLRITFAA--DP 387 (409)
T ss_pred hcCCCCCHHHHHHHHHHhCCEEEecchhcCC-----------------------------------CCeEEEEeCC--CH
Confidence 00001 11 2356788899999999875521 5789999995 78
Q ss_pred HHHHHHHHhhhhhhh
Q 010538 486 EDAKVNRCSSFDFVN 500 (508)
Q Consensus 486 eev~~l~~~~~~~~~ 500 (508)
++++..++.|++++.
T Consensus 388 e~l~eal~rl~~~~~ 402 (409)
T PLN02656 388 SSLEEALGRIKSFYL 402 (409)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888887654
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.9e-23 Score=216.76 Aligned_cols=307 Identities=18% Similarity=0.142 Sum_probs=216.2
Q ss_pred hHHHHHHHHHHHHHcC--CCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEcc
Q 010538 83 CDIVRAAREQVLDYFN--ASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDV 160 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~--~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~ 160 (508)
..+.+.+.+.++...| ++++ +|++|+|+++|+.+++..+ .++||.|++.+ |++......++..|++++.||+
T Consensus 135 ~~LR~~ia~~l~~~~g~~~~~~--~IiiT~G~q~al~l~~~~l-~~pGd~v~vE~---PtY~~~~~~~~~~g~~~~~vp~ 208 (459)
T COG1167 135 PELREAIAAYLLARRGISCEPE--QIVITSGAQQALDLLLRLL-LDPGDTVLVED---PTYPGALQALEALGARVIPVPV 208 (459)
T ss_pred HHHHHHHHHHHHHhcCCccCcC--eEEEeCCHHHHHHHHHHHh-CCCCCEEEEcC---CCcHHHHHHHHHcCCcEEecCC
Confidence 3444444444432233 5677 8999999999999999999 67999999555 7777777788888999999999
Q ss_pred CCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCc-eEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCC
Q 010538 161 EEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAY-NLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPF 239 (508)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t-~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~ 239 (508)
|++|- |++.++ ..+++. ++ .++++++.+||||.+++.+.-.++++ +|
T Consensus 209 d~~G~----------------~~e~le--~~~~~~-----~~k~~y~~P~~qNPtG~tms~~rR~~Ll~---------lA 256 (459)
T COG1167 209 DEDGI----------------DPEALE--EALAQW-----KPKAVYVTPTFQNPTGVTMSLERRKALLA---------LA 256 (459)
T ss_pred CCCCC----------------CHHHHH--HHHhhc-----CCcEEEECCCCCCCCCCccCHHHHHHHHH---------HH
Confidence 86554 488888 666432 33 45566999999999999997777776 66
Q ss_pred CCCCeEEEEeccccC----CCCCCCCCCC---CCcEEEEeccccccCCC-cceEEEEechhHhhhccccccCceEEeccc
Q 010538 240 SKGRWMVLIDAAKGC----VTQPPDLSKY---PVDFVVMSFYKIFGYPT-GLGALIMRNDAAKLLKNTYFSGGTVAASIA 311 (508)
Q Consensus 240 ~~~g~~vivD~a~~~----g~~~~d~~~~---~~D~~~~S~~K~~g~P~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~ 311 (508)
+++|++||.|+.++. +..+.++..+ +.-++++|++|++. |+ .+||+++++++++++...-.
T Consensus 257 ~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFSK~l~-PglRlG~vv~p~~~~~~~~~~k~---------- 325 (459)
T COG1167 257 EKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFSKTLA-PGLRLGYVVAPPELIEKLLRLKQ---------- 325 (459)
T ss_pred HHcCCeEEeeCcchhhhcCCCCCCChHhhCCCCCEEEEeeehhhcc-cccceeeeeCCHHHHHHHHHHHH----------
Confidence 679999999999874 2333233333 45599999999999 84 28999999998876654311
Q ss_pred chhhhhhccCccccccCCCCChhHHHHHHHHHH--HHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCC
Q 010538 312 DIDFVKRRQGVEELFEDGTASFLSIASIRHGFN--LINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTS 389 (508)
Q Consensus 312 ~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~--~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~ 389 (508)
....++ +......+..-+. .+ +..+..+++.+.+.++.+.+.|.+..+ +.+++..|.+
T Consensus 326 -------------~~~~~~-s~~~Q~~la~~l~~G~~-~~hl~~lR~~y~~rr~~l~~~L~~~~~----~~~~~~~p~g- 385 (459)
T COG1167 326 -------------AADLGP-SSLSQAALAAFLLSGHY-DRHLRRLRREYARRRDALLEALAEYLP----ELATWTRPEG- 385 (459)
T ss_pred -------------HhcCCC-ChHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhCC----CCeeeecCCc-
Confidence 111122 2222222222222 11 123678888888899999999988741 3556665554
Q ss_pred CcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeecc-CCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccC
Q 010538 390 EVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRT-GCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIH 468 (508)
Q Consensus 390 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~-g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 468 (508)
+.++|+++++. ++...+.+.+.++|+.+.+ |..+....
T Consensus 386 -------G~flwl~l~~~----~~~~~l~~~a~~~gv~i~~~g~~f~~~~------------------------------ 424 (459)
T COG1167 386 -------GLFLWLELPEG----IDARELLAAALEKGVVVTPLGSAFSADG------------------------------ 424 (459)
T ss_pred -------eEEEEEEcCCC----CCHHHHHHHHHHCCCEEEcCCccccCCC------------------------------
Confidence 78999999875 3445688888899999998 87655431
Q ss_pred CCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 469 GKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 469 ~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
...+.+|+|++... .+++++.++.+.+.++.
T Consensus 425 -~~~~~~Rl~~s~~~-~e~i~~gi~~l~~~~~~ 455 (459)
T COG1167 425 -DPRNGLRLSFSSPS-EEEIEEGIKRLAALLRE 455 (459)
T ss_pred -CCCCeEEEEcCCCC-HHHHHHHHHHHHHHHHH
Confidence 12568999999654 88888888887776643
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-23 Score=213.43 Aligned_cols=293 Identities=14% Similarity=0.111 Sum_probs=201.5
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCC-CeEEEecccccchHHHHHHHHhcCCeEEEEccCCc-
Q 010538 86 VRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQ-SSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA- 163 (508)
Q Consensus 86 ~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g-~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~- 163 (508)
..++|+.+|+++|++++ +|++|+|+++++.+++.++ ..+| ++|+++...|+.+ ...++..|.+++.+|++.+
T Consensus 61 ~~~lr~~ia~~~~~~~~--~I~~t~G~~~~l~~~~~~~-~~~g~~~vlv~~p~y~~~---~~~~~~~g~~~~~v~~~~~~ 134 (364)
T PRK04781 61 PPGLRSALAALYGCAPE--QLLIGRGSDEAIDLLVRAL-CVPGRDAVLVTPPVFGMY---AVCARLQNAPLVEVPLVDGA 134 (364)
T ss_pred HHHHHHHHHHHhCcChH--HEEEeCCHHHHHHHHHHHh-cCCCCCeEEEcCCChHHH---HHHHHHcCCEEEEEecCCCc
Confidence 36789999999999998 8999999999999999998 4556 7888877544433 3344557999999998431
Q ss_pred cCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCC
Q 010538 164 VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGR 243 (508)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g 243 (508)
..+ ..|++++. +++ ..+++++|++++++||||.++|.+++.++++. |+ ++
T Consensus 135 ~~~-------------~~d~~~l~--~~~-----~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~---------~~-~~ 184 (364)
T PRK04781 135 DGF-------------HADVPAIV--AAA-----LASNAKLVFLCSPSNPAGSAIALDQIERALQA---------LQ-GK 184 (364)
T ss_pred cCC-------------CcCHHHHH--HHH-----hccCCeEEEEcCCCCCCCCCcCHHHHHHHHHh---------CC-CC
Confidence 111 11456654 221 24678999999999999999999999999984 44 47
Q ss_pred eEEEEeccccCCCC---CCCC-CCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhh
Q 010538 244 WMVLIDAAKGCVTQ---PPDL-SKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVK 317 (508)
Q Consensus 244 ~~vivD~a~~~g~~---~~d~-~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~ 317 (508)
++||+|+++..-.. .... ...+.-+++.|++|.|| .+| +||+++++++++.+......
T Consensus 185 ~~iI~Deay~~f~~~~~~~~~~~~~~~vi~~~SfSK~~g-l~GlRvGy~v~~~~l~~~l~~~~~~--------------- 248 (364)
T PRK04781 185 ALVVVDEAYGEFSDVPSAVGLLARYDNLAVLRTLSKAHA-LAAARIGSLIANAELIAVLRRCQAP--------------- 248 (364)
T ss_pred cEEEEeCcchhhcCCcchHHHHhhCCCEEEEecChhhcc-cccceeeeeeCCHHHHHHHHhccCC---------------
Confidence 89999999863211 1111 12223488899999998 557 89999999988776644111
Q ss_pred hccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCC
Q 010538 318 RRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTG 397 (508)
Q Consensus 318 ~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (508)
.+.+.....++..+++--......+..+++.+.++.+.+.|++++ ++..+.|+. +
T Consensus 249 -----------~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~------~~~~~~p~~--------g 303 (364)
T PRK04781 249 -----------YPVPTPCAALAEQALSAPALAVTARRVAEVRAERERLHAALAQLP------GVRRVYPSQ--------G 303 (364)
T ss_pred -----------CCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCC------CCCeECCCC--------C
Confidence 112222222222233210000133445567788889999998763 553333433 7
Q ss_pred ceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEE
Q 010538 398 SMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRV 477 (508)
Q Consensus 398 ~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRi 477 (508)
+++++++++ . .++.+.|.++||.|++|..+.. .++++||
T Consensus 304 ~f~~~~~~~--~-----~~~~~~l~~~gI~v~~~~~~~~----------------------------------~~~~~Ri 342 (364)
T PRK04781 304 NFLLVRFDD--A-----EAAFQALLAAGVVVRDQRAAPR----------------------------------LSDALRI 342 (364)
T ss_pred cEEEEEcCC--H-----HHHHHHHHHCCeEEeeCCCCCC----------------------------------CCCeEEE
Confidence 889988853 1 3478888999999998753311 1578999
Q ss_pred ecCCCCCHHHHHHHHHhhhhhh
Q 010538 478 SFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 478 s~~~~~t~eev~~l~~~~~~~~ 499 (508)
+++ +.++.++++++|+++.
T Consensus 343 s~~---~~~~~~~l~~al~~~~ 361 (364)
T PRK04781 343 TLG---TPEQNDRVLAALQRTQ 361 (364)
T ss_pred eCC---CHHHHHHHHHHHHHHH
Confidence 999 8999999999998753
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=212.66 Aligned_cols=357 Identities=11% Similarity=0.061 Sum_probs=222.5
Q ss_pred hHHHHHHhhccCC-CCCeeeeCCCCC-----CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc--
Q 010538 26 IDQIRATEFKRLE-NGTVYLDHAGAT-----LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF-- 97 (508)
Q Consensus 26 ~~~~r~~~f~~~~-~~~iyld~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~-- 97 (508)
+.++++ .+..-. ++.|.|.-+-.. ++|+.+.+++.+..... ....|..... ...+|+++|+++
T Consensus 19 ~~~~~~-~~~~~~~~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~~----~~~~Y~~~~G----~~~lr~aia~~~~~ 89 (409)
T PLN00143 19 VKFLKE-NFNEDDHRLAISFGFGDPSCFECFRTTNIAEDAIVEAVRSA----KFNSYAPTGG----ILPARRAIADYLSN 89 (409)
T ss_pred HHHHHH-hcccCCCCceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhCc----CCCCCCCCCC----CHHHHHHHHHHHHh
Confidence 556665 554332 678888877664 55666666665543211 0111211111 344566666665
Q ss_pred ----CCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCcccccccc
Q 010538 98 ----NASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESL 173 (508)
Q Consensus 98 ----~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~ 173 (508)
+++++ +|++|+|+++++.+++.++ ..+|+.|+++...|+.+.... +..|.+++.++++....+
T Consensus 90 ~~g~~~~~~--~I~it~G~~~al~~~~~~l-~~~gd~v~v~~P~y~~~~~~~---~~~g~~~~~~~~~~~~~~------- 156 (409)
T PLN00143 90 DLPYQLSPD--DVYLTLGCKHAAEIIIKVL-ARPEANILLPRPGFPDVETYA---IFHHLEIRHFDLLPEKGW------- 156 (409)
T ss_pred hcCCCCCHh--hEEEecChHHHHHHHHHHH-cCCCCEEEEcCCCCcCHHHHH---HHcCCEEEEEeccCCCCC-------
Confidence 45777 8999999999999999998 688999999887777665444 446999999987532111
Q ss_pred ccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEecccc
Q 010538 174 VTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKG 253 (508)
Q Consensus 174 ~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~ 253 (508)
.+|+++++ +++ .++++++++++++||||.+++.+++.++++ +|++++++||+|+++.
T Consensus 157 ------~~d~~~l~--~~~------~~~~~~~~~~nP~NPTG~~~s~~~~~~l~~---------~a~~~~~~ii~De~Y~ 213 (409)
T PLN00143 157 ------EVDLDAVE--AIA------DENTIAMVIINPGNPCGSVYSYEHLNKIAE---------TARKLGILVIADEVYG 213 (409)
T ss_pred ------cCCHHHHH--Hhc------ccCCEEEEEECCCCCCCCccCHHHHHHHHH---------HHHHcCCeEEEEcccc
Confidence 12688888 544 456789999999999999999887777766 4556999999999986
Q ss_pred C---CCCC-CCCC---CCCCcEEEEeccccccCCCc--ceEEEEe-c-hhHhhh---ccccccCceEEecccchhhhhhc
Q 010538 254 C---VTQP-PDLS---KYPVDFVVMSFYKIFGYPTG--LGALIMR-N-DAAKLL---KNTYFSGGTVAASIADIDFVKRR 319 (508)
Q Consensus 254 ~---g~~~-~d~~---~~~~D~~~~S~~K~~g~P~G--~G~l~~~-~-~~~~~l---~~~~~g~~~~~~~~~~~~~~~~~ 319 (508)
. ...+ ..+. ....-+++.|++|.|+.| | +||++++ + .+++.+ .... .
T Consensus 214 ~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~p-GlRvG~~v~~~p~~~~~~~~~~~~~~-~----------------- 274 (409)
T PLN00143 214 HIVFGSKPFVPMGLFASIVPVITLGSISKRWMIP-GWGLGWLVTCDPSGLLQICEIADSIK-K----------------- 274 (409)
T ss_pred ccccCCCCCcchhhhcccCcEEEEccchhhcCCC-ccceEEEEeeCchhhhhhHHHHHHHH-H-----------------
Confidence 3 1111 1211 112347889999998844 7 8999984 3 232111 1000 0
Q ss_pred cCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCce
Q 010538 320 QGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSM 399 (508)
Q Consensus 320 ~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (508)
....... .+.....++..+++-.....+++..+++++.++++.+.|.+++ +.....++. .+.+
T Consensus 275 ---~~~~~~~-~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~------~~~~~~~p~-------gg~f 337 (409)
T PLN00143 275 ---ALNPAPF-PPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEIP------CIMCPQKAE-------GAFF 337 (409)
T ss_pred ---HHhccCC-CCchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhcCC------CCCCCCCCC-------eeEE
Confidence 0000011 1333333444344310011356677777888888888887752 222222222 2789
Q ss_pred EEEEeeCC--CCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEE
Q 010538 400 VSFNLKRP--DGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRV 477 (508)
Q Consensus 400 v~~~~~~~--~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRi 477 (508)
+|++++.. ++..-+...+.+++.++||.+.+|..|. ..+++||
T Consensus 338 ~w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~-----------------------------------~~~~iRi 382 (409)
T PLN00143 338 ALVKLNLLLLEDIEDDMEFCLKLAKEESLIILPGVTVG-----------------------------------LKNWLRI 382 (409)
T ss_pred EEEecchhhcCCCCCHHHHHHHHHHhCCEEEeCccccC-----------------------------------CCCeEEE
Confidence 99998642 1100011234466688999999987541 1578999
Q ss_pred ecCCCCCHHHHHHHHHhhhhhhh
Q 010538 478 SFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 478 s~~~~~t~eev~~l~~~~~~~~~ 500 (508)
+++ .+.++++..++.|+++++
T Consensus 383 ~~~--~~~~~l~~al~rl~~~l~ 403 (409)
T PLN00143 383 TFA--VEQSSLEDGLGRLKSFCG 403 (409)
T ss_pred EEc--CCHHHHHHHHHHHHHHHH
Confidence 999 368888888888887654
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-22 Score=210.15 Aligned_cols=342 Identities=14% Similarity=0.092 Sum_probs=217.3
Q ss_pred CCCeeeeCCCCCCC-CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC--CCCCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGATLY-SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN--ASMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~--~~~~~~~i~~t~g~t~a 115 (508)
.+.+.|..+....+ ++.+.+++ ...... .....|........+.+++.+.+.+..| .+++ +|++|+|+++|
T Consensus 29 ~~~i~l~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~--~i~~t~G~~~a 102 (386)
T PRK07550 29 GPLIDLSQAVPGYPPPPELLRAL-AEAAAD---PAAHLYGPVEGLPELREAYAAHYSRLYGAAISPE--QVHITSGCNQA 102 (386)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHH-HHHHhC---cCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcc--eEEEecCcHHH
Confidence 35677776664444 34444443 333221 1111221111223344444444444444 5667 89999999999
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPER 195 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~ 195 (508)
+.+++.++ ..+|+.|+++...|+.+.. .++..|++++.++.+....+ .+|+++++ +++
T Consensus 103 l~~~~~~l-~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~-------------~~~~~~l~--~~~--- 160 (386)
T PRK07550 103 FWAAMVTL-AGAGDEVILPLPWYFNHKM---WLDMLGIRPVYLPCDEGPGL-------------LPDPAAAE--ALI--- 160 (386)
T ss_pred HHHHHHHh-cCCCCEEEEcCCCCcchHH---HHHhcCCEEEEEecCCCcCC-------------CCCHHHHH--HHh---
Confidence 99999998 5789999998877766544 34567999999998742222 12577788 554
Q ss_pred CCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCC----CCCCCCC---CC-CCc
Q 010538 196 DPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCV----TQPPDLS---KY-PVD 267 (508)
Q Consensus 196 ~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g----~~~~d~~---~~-~~D 267 (508)
.+++++|++++++||||.++|.+.+.++++ +|+++|++||+|++++.. ..+..+. .. ...
T Consensus 161 ---~~~~~~v~~~~P~NPtG~~~~~~~~~~i~~---------~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~ 228 (386)
T PRK07550 161 ---TPRTRAIALVTPNNPTGVVYPPELLHELYD---------LARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTL 228 (386)
T ss_pred ---cccCcEEEEeCCCCCCCcccCHHHHHHHHH---------HHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccE
Confidence 346788888999999999999665555544 344599999999997631 1122111 11 224
Q ss_pred EEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHH
Q 010538 268 FVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNL 345 (508)
Q Consensus 268 ~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~ 345 (508)
+++.|++|.+| .+| +|+++.+++.++.+...... ...+++.....++..+++.
T Consensus 229 i~~~S~SK~~g-~~G~RiG~i~~~~~~~~~~~~~~~~------------------------~~~~~s~~~q~~~~~~l~~ 283 (386)
T PRK07550 229 VHLYSFSKSYA-LTGHRVGAVVASPARIAEIEKFMDT------------------------VAICAPRIGQIAVAWGLPN 283 (386)
T ss_pred EEEecchhhcc-CcccceEeeecCHHHHHHHHHHHhh------------------------cccCCCcHHHHHHHHHhcc
Confidence 77899999988 445 89999998887665543211 1112333344444445543
Q ss_pred HHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHH-hhC
Q 010538 346 INSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLA-SLS 424 (508)
Q Consensus 346 ~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L-~~~ 424 (508)
+.+ .++..++++.+.++++.+.|.+.. ++.+. +.+ +.++|++++... .+..++...| +++
T Consensus 284 ~~~-~~~~~~~~~~~~~~~l~~~L~~~~------~~~~~-~~g--------~~~~~~~~~~~~---~~~~~l~~~l~~~~ 344 (386)
T PRK07550 284 LAD-WRAGNRAEIARRRDAFRAVFARLP------GWELL-ASG--------AYFAYVRHPFPD---RPSREVARRLAKEA 344 (386)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHhCC------CceeC-CCc--------eEEEEecCCCCC---CCHHHHHHHHHHhc
Confidence 322 245667788888899999998752 45443 222 678888876411 2344577664 678
Q ss_pred CCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 425 GIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 425 gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
||.+.+|..+... ..+++||+++. .+.++++.+++.|.+|
T Consensus 345 gv~v~pg~~f~~~---------------------------------~~~~iRis~~~-~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 345 GILCLPGTMFGPG---------------------------------QEGYLRLAFAN-ADVAGIGELVERLRAF 384 (386)
T ss_pred CEEEeCchhhCCC---------------------------------CCCEEEEEeec-CCHHHHHHHHHHHHhh
Confidence 9999998755321 25789999974 4689999999988776
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-22 Score=210.27 Aligned_cols=343 Identities=9% Similarity=0.030 Sum_probs=216.4
Q ss_pred CCCeeeeCCCCC----CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc------CCCCCCceEEE
Q 010538 39 NGTVYLDHAGAT----LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF------NASMKDYKCIF 108 (508)
Q Consensus 39 ~~~iyld~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~------~~~~~~~~i~~ 108 (508)
++.+.|+.+... ++++.+++++.+... ... .|.. ......+|+.+|+++ +++++ +|++
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~i~~~~~~~~~-~~~-----~Y~~----~~G~~~lr~~ia~~~~~~~~~~~~~~--~i~~ 100 (404)
T PRK09265 33 HKILKLNIGNPAPFGFEAPDEILRDVIRNLP-TAQ-----GYSD----SKGLFSARKAIMQYYQQKGIPDVDVD--DIYI 100 (404)
T ss_pred CCeEEecCCCCCcCCCCCCHHHHHHHHHHhh-cCC-----CCCC----CCCcHHHHHHHHHHHhccCCCCCCcc--cEEE
Confidence 578899876432 256677777655332 111 1211 111346778888877 77888 8999
Q ss_pred cCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhc
Q 010538 109 TSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRK 188 (508)
Q Consensus 109 t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~ 188 (508)
|+|+++++.+++.++ .++|+.|+++...|+.+.... +..|.+++.++.+.+... ..|+++++
T Consensus 101 t~G~~~~l~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~---~~~g~~~v~~~~~~~~~~-------------~~d~~~l~- 162 (404)
T PRK09265 101 GNGVSELIVMAMQAL-LNNGDEVLVPAPDYPLWTAAV---SLSGGKPVHYLCDEEAGW-------------FPDLDDIR- 162 (404)
T ss_pred eCChHHHHHHHHHHh-CCCCCEEEEeCCCCcChHHHH---HHcCCEEEEEecccccCC-------------CCCHHHHH-
Confidence 999999999999988 688999999988887655444 445888888877543221 11678888
Q ss_pred CCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCCCCCCCC
Q 010538 189 GASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQPPDLSKY 264 (508)
Q Consensus 189 ~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d~~~~ 264 (508)
+++ .+++++|++++++||||.++|.+++.++++ +|+++|++||+|+++.. +....++...
T Consensus 163 -~~~------~~~~~~v~l~~P~NPtG~~~~~~~~~~i~~---------~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~ 226 (404)
T PRK09265 163 -SKI------TPRTKAIVIINPNNPTGAVYSKELLEEIVE---------IARQHNLIIFADEIYDKILYDGAVHISIASL 226 (404)
T ss_pred -Hhc------cccceEEEEECCCCCCCcCCCHHHHHHHHH---------HHHHCCCEEEEehhhhhccCCCCCcCCHHHc
Confidence 544 457899999999999999999555444443 33349999999999753 2111222221
Q ss_pred --C-CcEEEEeccccccCCCc--ceEEEEe--chhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHH
Q 010538 265 --P-VDFVVMSFYKIFGYPTG--LGALIMR--NDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIA 337 (508)
Q Consensus 265 --~-~D~~~~S~~K~~g~P~G--~G~l~~~--~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~ 337 (508)
+ .-+++.|++|.||.| | +||++++ +...+.+...+.. ... ...+.+.....
T Consensus 227 ~~~~~vi~~~S~SK~~~~p-GlRiG~~v~~~~~~~~~~~~~~~~~--------------------~~~-~~~~~~~~~q~ 284 (404)
T PRK09265 227 APDLLCVTFNGLSKAYRVA-GFRVGWMVLSGPKKHAKGYIEGLDM--------------------LAS-MRLCANVPAQH 284 (404)
T ss_pred CCCceEEEEecchhhccCc-ccceEEEEEeCchHHHHHHHHHHHH--------------------Hhc-cccCCCcHHHH
Confidence 1 225678999999835 7 7999974 3222111110000 000 01123334444
Q ss_pred HHHHHHHHHHhcChHHH---HHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCC-CCccC
Q 010538 338 SIRHGFNLINSLTVPAI---CRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPD-GSWFG 413 (508)
Q Consensus 338 ~l~~al~~~~~~g~~~i---~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~ 413 (508)
++.+++..... .+.+ .+++.+.++++.+.|+++ +++++..|.+ +.++|++++... +..-+
T Consensus 285 ~~~~~l~~~~~--~~~~~~~~~~~~~~r~~~~~~L~~~------~~~~~~~p~~--------g~~l~~~~~~~~~~~~~~ 348 (404)
T PRK09265 285 AIQTALGGYQS--INELILPGGRLYEQRDRAWELLNAI------PGVSCVKPKG--------ALYAFPKLDPKVYPIHDD 348 (404)
T ss_pred HHHHHhcCchh--HHHHHHHHHHHHHHHHHHHHHHhcC------CCCcccCCCc--------ceEEEEEecccccCCCCH
Confidence 44445431111 1222 245667788888888876 3566655543 788888886421 00012
Q ss_pred HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHH
Q 010538 414 YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRC 493 (508)
Q Consensus 414 ~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~ 493 (508)
...+.+.+.++||.+.+|..|... ..+++|++++ .+.++++..++
T Consensus 349 ~~~~~~~l~~~gv~v~pg~~F~~~---------------------------------~~~~~Ri~~~--~~~e~l~~~l~ 393 (404)
T PRK09265 349 EQFVLDLLLQEKVLLVQGTGFNWP---------------------------------EPDHFRIVTL--PRVDDLEEAIG 393 (404)
T ss_pred HHHHHHHHHhCCEEEECchhhCCC---------------------------------CCCeEEEEeC--CCHHHHHHHHH
Confidence 234778889999999998755221 2578999996 68999999999
Q ss_pred hhhhhhh
Q 010538 494 SSFDFVN 500 (508)
Q Consensus 494 ~~~~~~~ 500 (508)
.|+++++
T Consensus 394 rl~~~l~ 400 (404)
T PRK09265 394 RIGRFLS 400 (404)
T ss_pred HHHHHHH
Confidence 9887764
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-22 Score=206.19 Aligned_cols=319 Identities=13% Similarity=0.061 Sum_probs=228.2
Q ss_pred hhhhhHHHHHHHHHHHHHcCCCCCCceE-EEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHH-HHHHhcCC-eE
Q 010538 79 SLATCDIVRAAREQVLDYFNASMKDYKC-IFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIR-EYALSQGA-AA 155 (508)
Q Consensus 79 ~~~~~~~~~~~r~~la~~~~~~~~~~~i-~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~-~~~~~~G~-~v 155 (508)
+....+++.++++.+.++++.+.+ |++ ++++|+|.++..++.++..++|+.+++.- .+ + ..|. +.+++.|+ ++
T Consensus 34 s~~F~~i~~e~~~~L~~l~~~~~~-~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-~F-G-~r~~~eia~~~g~~~v 109 (374)
T TIGR01365 34 SKLGKEKLAEAIKKTREMLGVPAD-YLIGIVPASDTGAVEMALWSMLGCRGVDVLAWE-SF-G-KGWVTDVTKQLKLPDV 109 (374)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCC-cEEEEECCchHHHHHHHHHHcCCCCCCeEEEEC-HH-H-HHHHHHHHHhcCCCCc
Confidence 456789999999999999998533 455 56899999999999998435777777642 11 1 2455 78888898 47
Q ss_pred EEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccc
Q 010538 156 FAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILE 235 (508)
Q Consensus 156 ~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~ 235 (508)
..+..+....+ ++++++ . . +-|+++|..+.||..+|++++. +.
T Consensus 110 ~~l~~~~g~~~---------------~~~~ve--~--------~---~~v~~vhnETSTGv~npv~~i~---~~------ 152 (374)
T TIGR01365 110 RVLEAEYGKLP---------------DLKKVD--F--------K---NDVVFTWNGTTSGVRVPNGDFI---PA------ 152 (374)
T ss_pred EEEcCCCCCCC---------------CHHHcC--C--------C---CCEEEecCCCchheeccccccc---cc------
Confidence 87776543333 566676 1 1 1267999999999999997554 22
Q ss_pred cCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhh
Q 010538 236 ISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDF 315 (508)
Q Consensus 236 ~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~ 315 (508)
.++++++||++.++|..|+++.+ +|++++|.+|.+++|+|+++++++++++++....-..+.. ....++
T Consensus 153 -----~~~~lliVDavSs~g~~~l~~d~--iDv~~tgsQK~L~~ppGls~v~vs~~Al~~~~~~~~y~~~----~~~~~~ 221 (374)
T TIGR01365 153 -----DREGLTICDATSAAFAQDLDYHK--LDVVTFSWQKVLGGEGAHGMLILSPRAVARLESYTPAWPL----PKIFRL 221 (374)
T ss_pred -----cCCCcEEEEccchhcCCCCChhH--CcEEEEechhccCCCCceEEEEECHHHHHHHhhcCCCCCC----hhhhcc
Confidence 04789999999999999999995 9999999999999899999999999998775522100000 000000
Q ss_pred hhh---ccCccccccCCCCChhHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHhcccCCCCCce-EEEecC-CCC
Q 010538 316 VKR---RQGVEELFEDGTASFLSIASIRHGFNLINSL-TVPAICRHIASLGMYVRKVLLSLRHENGADV-CTIYGT-YTS 389 (508)
Q Consensus 316 ~~~---~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~-~~~~~~-~~~ 389 (508)
... ...........||++..++++..+++++.+. |++.+.+|+.++++.+++.++++ | +.++.. +..
T Consensus 222 ~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~l-------g~l~~~~~~~~~ 294 (374)
T TIGR01365 222 TKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKN-------NWIHFLAETPEI 294 (374)
T ss_pred ccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHC-------CCcccCCCChhh
Confidence 000 0000123455678888888888888888775 89999999999999999999998 5 666653 221
Q ss_pred CcccCCCCceEEEEeeCCC------CCccC-HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCC
Q 010538 390 EVSYHDTGSMVSFNLKRPD------GSWFG-YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWD 462 (508)
Q Consensus 390 ~~~~~~~~~~v~~~~~~~~------~~~~~-~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 462 (508)
+...++++.++... ...++ ..++.+.|+++||.+.+|...
T Consensus 295 -----rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~G~~~---------------------------- 341 (374)
T TIGR01365 295 -----RSNTSVCLKVVDPAIDALDEDAQADFAKELISTLEKEGVAYDIGSYR---------------------------- 341 (374)
T ss_pred -----cCCCeEEEEeCCccccccccchhhHHHHHHHHHHHHCCEEEeccccc----------------------------
Confidence 22455667764321 11122 256889999999999877421
Q ss_pred CccccCCCCCceEEEecCCCCCHHHHHHHHHhhh
Q 010538 463 DNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 463 ~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~ 496 (508)
..+..+||+.....+.+|++.++..|.
T Consensus 342 -------~~~~~fRIg~~G~i~~~di~~l~~~l~ 368 (374)
T TIGR01365 342 -------DAPSGLRIWCGATVEKSDLECLCPWLD 368 (374)
T ss_pred -------cCCCceEEecCCcCCHHHHHHHHHHHH
Confidence 125789999999999999999988865
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=212.84 Aligned_cols=319 Identities=15% Similarity=0.064 Sum_probs=204.8
Q ss_pred CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeE
Q 010538 52 YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSY 131 (508)
Q Consensus 52 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~v 131 (508)
+++.+.+++.+... . . ..+. .....+++++.+++++| ++ ++++++|+|+|+.+++.++ .++|++|
T Consensus 10 ~~~~v~~a~~~~~~-~---~--~~~~----~~~~~~~l~~~~a~~~g--~~--~~~~~~~gt~a~~~~~~~l-~~~gd~v 74 (338)
T cd06502 10 PTPEMLEAMAAANV-G---D--DVYG----EDPTTAKLEARAAELFG--KE--AALFVPSGTAANQLALAAH-TQPGGSV 74 (338)
T ss_pred CCHHHHHHHHhccc-C---C--cccC----CCHHHHHHHHHHHHHhC--CC--eEEEecCchHHHHHHHHHh-cCCCCeE
Confidence 57778777654321 1 1 1111 13457888999999999 44 6888999999999999998 6889999
Q ss_pred EEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCC-CCCCCceEEEEeCC
Q 010538 132 MYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERD-PAGDAYNLFAFPSE 210 (508)
Q Consensus 132 l~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~-~~~~~t~lv~~~~~ 210 (508)
+++...|+++..........|++++.+|.+. ..+ |+++++ +++.+.. ...+++++|+++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~---------------d~~~l~--~~i~~~~~~~~~~~~~v~l~~p 136 (338)
T cd06502 75 ICHETAHIYTDEAGAPEFLSGVKLLPVPGEN-GKL---------------TPEDLE--AAIRPRDDIHFPPPSLVSLENT 136 (338)
T ss_pred EEecCcceeeecCCcHHHHcCceEEeecCCC-CcC---------------CHHHHH--HHhhccCCCcCCcceEEEEEee
Confidence 9999999876432222233699999998754 334 678888 6664210 11247899999999
Q ss_pred CCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC-----CCCCCCCCCCcEEEEeccccccCCCcceE
Q 010538 211 CNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT-----QPPDLSKYPVDFVVMSFYKIFGYPTGLGA 285 (508)
Q Consensus 211 ~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~-----~~~d~~~~~~D~~~~S~~K~~g~P~G~G~ 285 (508)
+|+ |.+++.+++.++++ +|+++|+++++|++|..+. .++.....++|+++.|+||+|+.| |-++
T Consensus 137 ~n~-g~~~~~~~l~~i~~---------~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~-~g~~ 205 (338)
T cd06502 137 TEG-GTVYPLDELKAISA---------LAKENGLPLHLDGARLANAAAALGVALKTYKSGVDSVSFCLSKGGGAP-VGAV 205 (338)
T ss_pred cCC-ccccCHHHHHHHHH---------HHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcCCEEEEeccccCCCc-cceE
Confidence 996 76667655444443 2334899999999874221 122211236899999999999956 4245
Q ss_pred EEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Q 010538 286 LIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYV 365 (508)
Q Consensus 286 l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l 365 (508)
++.++++++.+.+....+ .++.+...+ ...+++..+...+...+.+++.++++++
T Consensus 206 ~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~-~~~a~~~~L~~~~~~~~~~~~~~~~~~l 260 (338)
T cd06502 206 VVGNRDFIARARRRRKQA------------------------GGGMRQSGF-LAAAGLAALENDLWLRRLRHDHEMARRL 260 (338)
T ss_pred EECCHHHHHHHHHHHHHh------------------------CCChhhHHH-HHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 567888877765542111 111122222 1222333333334566778899999999
Q ss_pred HHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHh---hCCCeeccCCCCCchHHHhh
Q 010538 366 RKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLAS---LSGIQLRTGCFCNPGACAKY 442 (508)
Q Consensus 366 ~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~---~~gI~v~~g~~~~~~~~~~~ 442 (508)
.+.|+++ ++.+..+ .++++.+.++... .+ ...+.+.+. ++|+.++...
T Consensus 261 ~~~L~~~-------~~~~~~~---------~~~~~~v~~~~~~--~~-~~~l~~~l~~~~~~gi~~~~~~---------- 311 (338)
T cd06502 261 AEALEEL-------GGLESEV---------QTNIVLLDPVEAN--AV-FVELSKEAIERRGEGVLFYAWG---------- 311 (338)
T ss_pred HHHHHhc-------CCCcccc---------cCCeEEEecCCcc--HH-HHHHHHHHHHhhhCCEEEEecC----------
Confidence 9999887 3433322 1688888765321 11 112222222 5788876521
Q ss_pred cCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhh
Q 010538 443 LGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFD 497 (508)
Q Consensus 443 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~ 497 (508)
.+++|+++++++|.+|++++++++++
T Consensus 312 -----------------------------~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 312 -----------------------------EGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred -----------------------------CCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 36899999999999999999998754
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-22 Score=206.27 Aligned_cols=319 Identities=13% Similarity=0.081 Sum_probs=215.0
Q ss_pred chHHHHHHhhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCc
Q 010538 25 SIDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDY 104 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~ 104 (508)
+++.+-. +|-...++.++|..+-....++ ..+.....+ ..|+ ... ..++|+.+++++|.+++
T Consensus 4 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~y~----~~~-~~~lr~~la~~~~~~~~-- 65 (330)
T TIGR01140 4 NLRRAAA-RYGIPPEDWLDFSTGINPLGPP-VPPIPASAW---------ARYP----DPE-YDELRAAAAAYYGLPAA-- 65 (330)
T ss_pred cHHHHHH-HcCCChhheeEccccCCCCCCC-hhhcchHHH---------hhCC----Ccc-HHHHHHHHHHHhCCChh--
Confidence 5666655 5654446789999886554433 322221111 1111 112 37789999999999888
Q ss_pred eEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchh
Q 010538 105 KCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPI 184 (508)
Q Consensus 105 ~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~ 184 (508)
+|++|+|+++++.++..++ .+| .|++....|+ .+...++..|.+++.++ + ++
T Consensus 66 ~i~~t~G~~~~i~~~~~~l--~~g-~vl~~~p~y~---~~~~~~~~~g~~~~~~~-----d-----------------~~ 117 (330)
T TIGR01140 66 SVLPVNGAQEAIYLLPRLL--APG-RVLVLAPTYS---EYARAWRAAGHEVVELP-----D-----------------LD 117 (330)
T ss_pred hEEECCCHHHHHHHHHHHh--CCC-eEEEeCCCcH---HHHHHHHHcCCEEEEeC-----C-----------------HH
Confidence 8999999999999987775 456 5776654444 44455667899998887 1 45
Q ss_pred hhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCC--
Q 010538 185 QRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLS-- 262 (508)
Q Consensus 185 ~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~-- 262 (508)
.++ +.+ ++++++++++++||||.++|.+++.++++ +|+++|++||+|+++.......++.
T Consensus 118 ~l~--~~~-------~~~~~v~i~~p~NPtG~~~~~~~~~~l~~---------~a~~~~~~ii~De~y~~~~~~~~~~~~ 179 (330)
T TIGR01140 118 RLP--AAL-------EELDVLVLCNPNNPTGRLIPPETLLALAA---------RLRARGGWLVVDEAFIDFTPDASLAPQ 179 (330)
T ss_pred HHH--hhc-------ccCCEEEEeCCCCCCCCCCCHHHHHHHHH---------HhHhcCCEEEEECcccccCCccchhhH
Confidence 556 443 24578999999999999999888877776 4566999999999986432222222
Q ss_pred --CCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHH
Q 010538 263 --KYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIAS 338 (508)
Q Consensus 263 --~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~ 338 (508)
..+.++++.|++|++| ++| +|+++++++.++.+.+... ..+.+.....+
T Consensus 180 ~~~~~~~i~~~S~SK~~g-~~G~R~G~i~~~~~~~~~l~~~~~--------------------------~~~~s~~~q~~ 232 (330)
T TIGR01140 180 AARFPGLVVLRSLTKFFG-LAGLRLGFVVAHPALLARLREALG--------------------------PWTVNGPARAA 232 (330)
T ss_pred hccCCCEEEEEecchhhc-CchhhhhheeCCHHHHHHHHhcCC--------------------------CCCchHHHHHH
Confidence 1245699999999999 557 6999999988776664411 11223333333
Q ss_pred HHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHH
Q 010538 339 IRHGFNLINSLT-VPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREV 417 (508)
Q Consensus 339 l~~al~~~~~~g-~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l 417 (508)
+.+++.+.+ .+.+++++.++++++.+.|++.. .+++. +.. +.++|+.+++. .++
T Consensus 233 ---~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~------~~~~~-~~~--------~~f~~~~~~~~-------~~l 287 (330)
T TIGR01140 233 ---GRAALADTAWQAATRARLAAERARLAALLARLG------GLEVV-GGT--------ALFLLVRTPDA-------AAL 287 (330)
T ss_pred ---HHHHHhchHHHHHHHHHHHHHHHHHHHHHHhCC------CceEC-CCC--------CeEEEEEcCCH-------HHH
Confidence 334433322 36778999999999999998872 35543 222 67888876531 247
Q ss_pred HHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhh
Q 010538 418 EKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSS 495 (508)
Q Consensus 418 ~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~ 495 (508)
.+.|.++||.+.+|..+.. ...+++|++++. ..++ ++++.++
T Consensus 288 ~~~l~~~gi~v~pg~~f~~---------------------------------~~~~~iRi~~~~--~~~~-~~~~~~l 329 (330)
T TIGR01140 288 HEALARRGILIRDFDNFPG---------------------------------LDPRYLRFALPT--DEEN-DRLEEAL 329 (330)
T ss_pred HHHHHHCCEEEEECCCCCC---------------------------------CCCCEEEEEecC--HHHH-HHHHHhh
Confidence 8888889999999976521 125789999983 3344 8887765
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.9e-23 Score=217.33 Aligned_cols=295 Identities=13% Similarity=0.067 Sum_probs=202.8
Q ss_pred HHHHHHHHHHcCC---CCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc
Q 010538 87 RAAREQVLDYFNA---SMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA 163 (508)
Q Consensus 87 ~~~r~~la~~~~~---~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~ 163 (508)
...|+.++++++. +++ +|++|+|+++|+.+++.++ ..+|+.|++....|+.+ ...++..|++++.+|++++
T Consensus 124 ~~lr~~ia~~~~~~~~~~~--~Iiit~G~~~al~~~~~~l-~~pgd~Vlv~~P~y~~~---~~~~~~~g~~~~~v~~~~~ 197 (431)
T PRK15481 124 PELHAWAARWLRDDCPVAF--EIDLTSGAIDAIERLLCAH-LLPGDSVAVEDPCFLSS---INMLRYAGFSASPVSVDAE 197 (431)
T ss_pred HHHHHHHHHHHhhccCCcC--eEEEecCcHHHHHHHHHHh-CCCCCEEEEeCCCcHHH---HHHHHHcCCeEEeeccCCC
Confidence 4467777777662 345 7999999999999999998 57899999888555544 4555567999999998654
Q ss_pred cCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEe-CCCCCCccccCHHHHHHHHcCCccccccCCCCCC
Q 010538 164 VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFP-SECNFSGSRFNLDLINIMKKNPERILEISPFSKG 242 (508)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~-~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~ 242 (508)
+ + |++.++ +++ ++++++++++ +++||||.+++.+++.++++ +|+++
T Consensus 198 g-~---------------~~~~l~--~~~------~~~~k~i~~~p~p~NPTG~~~s~~~~~~l~~---------la~~~ 244 (431)
T PRK15481 198 G-M---------------QPEKLE--RAL------AQGARAVILTPRAHNPTGCSLSARRAAALRN---------LLARY 244 (431)
T ss_pred C-C---------------CHHHHH--HHH------hcCCCEEEECCCCCCCCCccCCHHHHHHHHH---------HHHhc
Confidence 3 4 577887 554 2356777775 99999999999984444443 33337
Q ss_pred -CeEEEEeccccCCC--CCCC-CC-CCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhh
Q 010538 243 -RWMVLIDAAKGCVT--QPPD-LS-KYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDF 315 (508)
Q Consensus 243 -g~~vivD~a~~~g~--~~~d-~~-~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~ 315 (508)
+++||+|++++.-. ...+ +. ..+..+++.|++|.|+ | | +||+++++++++.+......
T Consensus 245 ~~~~ii~De~Y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~-~-GlRiG~~i~~~~~~~~~~~~~~~------------- 309 (431)
T PRK15481 245 PQVLVIIDDHFALLSSSPYHSVIPQTTQRWALIRSVSKALG-P-DLRLAFVASDSATSARLRLRLNS------------- 309 (431)
T ss_pred CCceEEecCchhhhccCCCCCCCcCCCCCEEEEeeeccccC-C-CceeEEEeCCHHHHHHHHHHHhc-------------
Confidence 99999999876311 0011 11 1134588999999999 8 6 89999998887766432110
Q ss_pred hhhccCccccccCCCCChhHHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccC
Q 010538 316 VKRRQGVEELFEDGTASFLSIASIRHGFNLIN-SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYH 394 (508)
Q Consensus 316 ~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~-~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~ 394 (508)
.....+.....++..+++.-. ...++..++.+++.++++.+.|++. ++.+..|.+
T Consensus 310 -----------~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~-------~~~~~~p~g------ 365 (431)
T PRK15481 310 -----------GTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQY-------GIAIPSPGD------ 365 (431)
T ss_pred -----------cccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCccccCCC------
Confidence 011223333444444443100 0115677888889999999999875 455544443
Q ss_pred CCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCce
Q 010538 395 DTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGA 474 (508)
Q Consensus 395 ~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (508)
++++|++++.. . ..+.+.|.++||.+.+|..|.... ..++
T Consensus 366 --g~f~~~~l~~~-~-----~~~~~~l~~~gV~v~pg~~f~~~~--------------------------------~~~~ 405 (431)
T PRK15481 366 --GLNLWLPLDTD-S-----QATALTLAKSGWLVREGEAFGVSA--------------------------------PSHG 405 (431)
T ss_pred --eEEEEEECCCC-H-----HHHHHHHHHCCcEEecCCccccCC--------------------------------CCCe
Confidence 78999988641 1 247778888999999997663211 1468
Q ss_pred EEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 475 IRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 475 iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
+|||++.. +.++++.+++.|++.++
T Consensus 406 iRis~~~~-~~~~i~~~~~~l~~~~~ 430 (431)
T PRK15481 406 LRITLSTL-NDAEINRLAADLHQALN 430 (431)
T ss_pred EEEEcCCC-ChHHHHHHHHHHHHHhc
Confidence 99999964 58999999999987754
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-22 Score=210.86 Aligned_cols=343 Identities=14% Similarity=0.064 Sum_probs=223.2
Q ss_pred CCCCCCCHHHHHHHHHHhhcccc-CCCCCccchhhhhhHHHHH-HHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcC
Q 010538 47 AGATLYSELQMEAIFRDFTTNVY-GNPHSQSDISLATCDIVRA-AREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFP 124 (508)
Q Consensus 47 ~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~ 124 (508)
++...++|.+++++...+...+. +.+++.+..|....+..++ +++.+++++|.+.. +++++|++.|+.+++.++
T Consensus 35 ~sen~~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~~~a---lv~~~SG~~A~~~~l~al- 110 (416)
T PRK13034 35 ASENFTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFGCDYA---NVQPHSGSQANGAVYLAL- 110 (416)
T ss_pred ccccCCCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCce---EEecCCcHHHHHHHHHHh-
Confidence 55666799999888665433332 3344444444444444554 66699999999754 566788899999999999
Q ss_pred CCCCCeEEEecccccchHH-HHHHHHhcCCeE--EEEccCC-ccCccccccccccccccccchhhhhcCCCCCCCCCCCC
Q 010538 125 WSHQSSYMYTMENHNSVLG-IREYALSQGAAA--FAIDVEE-AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGD 200 (508)
Q Consensus 125 ~~~g~~vl~~~~~h~s~~~-~~~~~~~~G~~v--~~v~~~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~ 200 (508)
.++|++|++++..|.+... ..+. ...+..+ ..++.+. ...+ |+++++ +.+++ .
T Consensus 111 ~~~GD~Vl~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~---------------d~~~le--~~l~~-----~ 167 (416)
T PRK13034 111 LKPGDTILGMSLSHGGHLTHGAKV-SLSGKWYNAVQYGVDRLTGLI---------------DYDEVE--ELAKE-----H 167 (416)
T ss_pred cCCCCEEEEcCccceeeeecCCcc-eeccceeeeEEcccccccCCc---------------CHHHHH--HHHhh-----c
Confidence 7899999999998877321 1110 0012222 2333332 1223 577777 55431 2
Q ss_pred CceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCC---CCCcEEEEeccccc
Q 010538 201 AYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSK---YPVDFVVMSFYKIF 277 (508)
Q Consensus 201 ~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~---~~~D~~~~S~~K~~ 277 (508)
++++|++.+ ..+|...|+++|.++|++ +|+++++|++|++|........ .++|++++|+||++
T Consensus 168 ~~klVi~~~--~~~g~~~dl~~l~~la~~------------~g~~livD~Aha~G~~~~g~~~~~~~~~Di~~~s~~K~l 233 (416)
T PRK13034 168 KPKLIIAGF--SAYPRELDFARFREIADE------------VGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKTL 233 (416)
T ss_pred CCeEEEECC--CccccccCHHHHHHHHHH------------cCCEEEEeCcccccCcccCCCCCCCCCceEEEEeCcccC
Confidence 468887654 346899999999999998 9999999999998776443311 25899999999999
Q ss_pred cCCCcceEEEEechhH-hhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHH
Q 010538 278 GYPTGLGALIMRNDAA-KLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICR 356 (508)
Q Consensus 278 g~P~G~G~l~~~~~~~-~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~ 356 (508)
++|.| |+++.+++.+ +.+++..+.+. .+++.++.++++..++..+.+.+..++++
T Consensus 234 ~g~~G-G~v~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~aa~~~al~~~~~~~~~~~~~ 289 (416)
T PRK13034 234 RGPRG-GMILTNDEEIAKKINSAVFPGL-----------------------QGGPLMHVIAAKAVAFGEALQPEFKTYAK 289 (416)
T ss_pred CCCCC-eEEEECcHHHHHHHHhhcCCcc-----------------------cCCccHHHHHHHHHHHHHHhChhHHHHHH
Confidence 66887 7777765543 33343322110 12233444555554555443334567789
Q ss_pred HHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCc
Q 010538 357 HIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNP 436 (508)
Q Consensus 357 ~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~ 436 (508)
++.+++++|++.|.++ |+++..+... ++++.+.+.+.. .....+.+.|.++||.+..-.....
T Consensus 290 ~l~~~a~~l~~~L~~~-------G~~~~~~~~~-------t~i~~v~~~~~~---~~~~~~~~~L~~~GI~v~~~~~p~~ 352 (416)
T PRK13034 290 QVIANAQALAEVLKER-------GYDLVSGGTD-------NHLLLVDLRPKG---LSGKDAEQALERAGITVNKNTVPGD 352 (416)
T ss_pred HHHHHHHHHHHHHHHc-------CCEeccCCCC-------CcEEEEEcCCCC---CCHHHHHHHHHhCCcEEeccCCCCC
Confidence 9999999999999887 6777653222 688887775432 2334567889999999875211100
Q ss_pred hHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCC----CCCHHHHHHHHHhhhhhhh
Q 010538 437 GACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGY----MSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 437 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~t~eev~~l~~~~~~~~~ 500 (508)
+. ....+..+|+|++. .+|++|++++++++.+.+.
T Consensus 353 -----------------~~------------~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~ 391 (416)
T PRK13034 353 -----------------TE------------SPFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLD 391 (416)
T ss_pred -----------------Cc------------CCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 00 00014679999998 5569999999999998765
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=211.80 Aligned_cols=339 Identities=11% Similarity=0.002 Sum_probs=218.6
Q ss_pred CCCeeeeCCCCCCC-CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc----C---CCCCCceEEEcC
Q 010538 39 NGTVYLDHAGATLY-SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF----N---ASMKDYKCIFTS 110 (508)
Q Consensus 39 ~~~iyld~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~---~~~~~~~i~~t~ 110 (508)
.+.+.|+.+..... ++.+.+++.+..... ....|+. . ....+|+.+|+++ | +++++ +|++|+
T Consensus 44 ~~~i~L~~g~p~~~~~~~~~~~l~~~~~~~----~~~~Y~~-~----G~~~lr~aia~~~~~~~g~~~~~~~~-~I~it~ 113 (410)
T PRK06290 44 MELIDMGVGEPDEMADESVVEVLCEEAKKP----ENRGYAD-N----GIQEFKEAAARYMEKVFGVKDIDPVT-EVIHSI 113 (410)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHhCC----CCCCCCC-C----CcHHHHHHHHHHHHHHcCCCcCCCcc-eEEEcc
Confidence 35788887765543 444444443322110 0111221 1 1344556666554 5 44531 699999
Q ss_pred ChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCC
Q 010538 111 GATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGA 190 (508)
Q Consensus 111 g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~ 190 (508)
|+++++.+++.++ ..+|+.|+++...|+.+... ++..|++++.+|++.++.. .+|++.++ +
T Consensus 114 Gs~~al~~~~~~~-~~~gd~Vlv~~P~y~~~~~~---~~~~g~~v~~v~~~~~~~~-------------~~d~~~l~--~ 174 (410)
T PRK06290 114 GSKPALAMLPSCF-INPGDVTLMTVPGYPVTGTH---TKYYGGEVYNLPLLEENNF-------------LPDLDSIP--K 174 (410)
T ss_pred CHHHHHHHHHHHh-CCCCCEEEEeCCCCccHHHH---HHHcCCEEEEEecCCCcCC-------------cCCHHHHH--H
Confidence 9999999999998 68899999998777665544 4456999999999754332 12577777 4
Q ss_pred CCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC---CCCCCCC----
Q 010538 191 SFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT---QPPDLSK---- 263 (508)
Q Consensus 191 ~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~---~~~d~~~---- 263 (508)
.+ .+++++|++++++||||.+++.+++.++++ +|+++|++||+|+++.... .+..+..
T Consensus 175 ~~------~~~~k~i~l~nP~NPTG~v~s~e~l~~l~~---------la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~ 239 (410)
T PRK06290 175 DI------KEKAKLLYLNYPNNPTGAVATKEFYEEVVD---------FAKENNIIVVQDAAYAALTFDGKPLSFLSVPGA 239 (410)
T ss_pred hh------cccceEEEEECCCCCCCcCCCHHHHHHHHH---------HHHHcCeEEEEecchhhceeCCCCcChhcCCCc
Confidence 44 347899999999999999999877777765 4556999999999987421 2223211
Q ss_pred CCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHH
Q 010538 264 YPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRH 341 (508)
Q Consensus 264 ~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~ 341 (508)
.+.++++.|++|.+| .+| +||+++++++++.+...... ...++. .+...++..
T Consensus 240 ~~~~I~i~SfSK~~g-~~GlRiG~ii~~~~l~~~l~~~~~~-----------------------~~~~~~-~~~q~aa~~ 294 (410)
T PRK06290 240 KEVGVEIHSLSKAYN-MTGWRLAFVVGNELIVKAFATVKDN-----------------------NDSGQF-IAIQKAGIY 294 (410)
T ss_pred cccEEEEeechhhcC-CchhheEeEEeCHHHHHHHHHHHhc-----------------------cccCCc-HHHHHHHHH
Confidence 245699999999998 447 89999998887665533110 111221 222233333
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCc---cCHHHHH
Q 010538 342 GFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSW---FGYREVE 418 (508)
Q Consensus 342 al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~l~ 418 (508)
+++. ...++.+++++.+.++++.+.|++. ++.+..+.+ +.++|+++++..... .+..++.
T Consensus 295 ~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~p~g--------~f~l~v~lp~~~~~~~~~~~~~~~~ 357 (410)
T PRK06290 295 ALDH--PEITEKIREKYSRRLDKLVKILNEV-------GFKAEMPGG--------TFYLYVKAPKGTKSGIKFENAEEFS 357 (410)
T ss_pred HhhC--cHHHHHHHHHHHHHHHHHHHHHHhC-------CCeecCCCe--------eeEEEEECCCccccCCCCCCHHHHH
Confidence 3332 1125677888889999999999886 566665543 567777876421000 1334577
Q ss_pred HHHhhCCC-eeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC-CCHHHHHHHHHhhh
Q 010538 419 KLASLSGI-QLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM-STFEDAKVNRCSSF 496 (508)
Q Consensus 419 ~~L~~~gI-~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~-~t~eev~~l~~~~~ 496 (508)
+.|.++|+ .+.+|.. .++++||+++.. .++|+.+++++++.
T Consensus 358 ~~Ll~~~~v~~~p~~~-------------------------------------~~~~lRi~~~~~~~~~~~~~~~~~~l~ 400 (410)
T PRK06290 358 QYLIKEKLISTVPWDD-------------------------------------AGHFLRFSVTFEAKDEEEEDRILEEIK 400 (410)
T ss_pred HHHHHhCCEEEECCcc-------------------------------------ccCeEEEEEEcccccccchhHHHHHHH
Confidence 77776654 4445431 146899999844 68899999999988
Q ss_pred hhhh
Q 010538 497 DFVN 500 (508)
Q Consensus 497 ~~~~ 500 (508)
+.+-
T Consensus 401 ~~~~ 404 (410)
T PRK06290 401 RRLS 404 (410)
T ss_pred HHHh
Confidence 7653
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=205.45 Aligned_cols=307 Identities=16% Similarity=0.179 Sum_probs=211.3
Q ss_pred CCCeeeeCCCCCCC-CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC---CCCCCceEEEcCChHH
Q 010538 39 NGTVYLDHAGATLY-SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN---ASMKDYKCIFTSGATA 114 (508)
Q Consensus 39 ~~~iyld~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~---~~~~~~~i~~t~g~t~ 114 (508)
.+.+.|+.+-...+ |+.+++++.+..... ....|+.. ...++|++++++++ ++++ +|++|+|+++
T Consensus 19 ~~~i~l~~~~~~~~~p~~~~~~~~~~~~~~----~~~~Y~~~-----~~~~Lr~aia~~~~~~~~~~~--~i~it~Ga~~ 87 (335)
T PRK14808 19 RDRTYLALNENPFPFPEDLVDEVFRRLNSD----TLRIYYDS-----PDEELIEKILSYLDTDFLSKN--NVSVGNGADE 87 (335)
T ss_pred CceeEecCCCCCCCCCHHHHHHHHHHhhhh----hhhcCCCC-----ChHHHHHHHHHHhCCCCCCcc--eEEEcCCHHH
Confidence 46788887765443 555666665533211 11112111 25678899999998 7888 8999999999
Q ss_pred HHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCC
Q 010538 115 ALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 115 al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
++.+++.++ +.|++.. |++......++..|++++.+|.+.++.++ ...+
T Consensus 88 ~i~~~~~~~-----d~v~v~~---P~y~~~~~~~~~~g~~~~~v~~~~~~~~~---------------~~~~-------- 136 (335)
T PRK14808 88 IIYVMMLMF-----DRSVFFP---PTYSCYRIFAKAVGAKFLEVPLTKDLRIP---------------EVNV-------- 136 (335)
T ss_pred HHHHHHHHh-----CcEEECC---CCHHHHHHHHHHcCCeEEEecCCCcCCCC---------------hhHc--------
Confidence 999999987 4577766 45445555566679999999987654331 1111
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCC--CCCCC-CCCCCCcEEEE
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCV--TQPPD-LSKYPVDFVVM 271 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g--~~~~d-~~~~~~D~~~~ 271 (508)
.+++++++++++||||.+++.+++.++++ ++++||+|+++..- ....+ +...+.-+++.
T Consensus 137 -----~~~~~i~i~nP~NPTG~~~s~~~l~~l~~-------------~~~~ii~DE~Y~~f~~~~~~~~~~~~~~vi~~~ 198 (335)
T PRK14808 137 -----GEGDVVFIPNPNNPTGHVFEREEIERILK-------------TGAFVALDEAYYEFHGESYVDLLKKYENLAVIR 198 (335)
T ss_pred -----cCCCEEEEeCCCCCCCCCcCHHHHHHHHh-------------cCCEEEEECchhhhcCCchHHHHHhCCCEEEEE
Confidence 24589999999999999999999999986 69999999998631 11111 11223358889
Q ss_pred eccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhc
Q 010538 272 SFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSL 349 (508)
Q Consensus 272 S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~ 349 (508)
|++|.|| .+| +||+++++++++.+...... .+.+.....++.++++...
T Consensus 199 S~SK~~~-l~GlRvG~~v~~~~~~~~l~~~~~~--------------------------~~~~~~~q~a~~~~l~~~~-- 249 (335)
T PRK14808 199 TFSKAFS-LAAQRIGYVVSSEKFIDAYNRVRLP--------------------------FNVSYVSQMFAKVALDHRE-- 249 (335)
T ss_pred echhhcc-CcccceEEEEeCHHHHHHHHHhcCC--------------------------CCCCHHHHHHHHHHHhCHH--
Confidence 9999999 557 89999999887766543110 1123333444455554321
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeec
Q 010538 350 TVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLR 429 (508)
Q Consensus 350 g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~ 429 (508)
.+.+..+++.+.++++.+.|+++ ++++..+. ++++++.+++.+ ...+.+.|.++||.|+
T Consensus 250 ~~~~~~~~~~~~r~~l~~~L~~~-------g~~~~~~~---------g~f~~~~l~~~~-----~~~~~~~l~~~Gi~V~ 308 (335)
T PRK14808 250 IFEERTKFIVEERERMKSALREM-------GYRITDSR---------GNFVFIFMEKEE-----KERLLEHLRAKNIAVR 308 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC-------CCEECCCC---------CeEEEEeCCCcc-----HHHHHHHHHHCCeEEE
Confidence 13555566677788888888876 56665442 788899887432 2358889999999998
Q ss_pred cCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 430 TGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 430 ~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
. | ..++|||++ +.++.++++++|+.|
T Consensus 309 ~---~-------------------------------------~~~~Risi~---~~~~~~~~~~~l~~~ 334 (335)
T PRK14808 309 S---F-------------------------------------REGVRITIG---KREENDMILKELEVF 334 (335)
T ss_pred E---C-------------------------------------CCCeEEecC---CHHHHHHHHHHHHhh
Confidence 4 1 246999999 889999999998765
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=206.22 Aligned_cols=323 Identities=16% Similarity=0.120 Sum_probs=237.7
Q ss_pred CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEE
Q 010538 53 SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYM 132 (508)
Q Consensus 53 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl 132 (508)
+|.+++++.+.+.....+-..+... ....+...++++.+|+++|.+.. ++|++|.. |+..++.++ .++++.|+
T Consensus 55 ~~~~~~a~~~~~~~~g~g~~gsR~i--~G~~~~h~~LE~~lA~f~g~e~a---l~f~SGy~-AN~~~i~~l-~~~~dli~ 127 (388)
T COG0156 55 HPELIEAAKAAIRRYGVGAGGSRLI--SGTSDLHVELEEELADFLGAEAA---LLFSSGFV-ANLGLLSAL-LKKGDLIF 127 (388)
T ss_pred CHHHHHHHHHHHHHhCCCCCCcCcc--cCCcHHHHHHHHHHHHHhCCCcE---EEEcccch-hHHHHHHHh-cCCCcEEE
Confidence 6777777766553322233333322 33577889999999999999876 99999988 788888888 57799999
Q ss_pred EecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCC
Q 010538 133 YTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECN 212 (508)
Q Consensus 133 ~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n 212 (508)
..+..|.|++...+. .+++++....+ |++.++ +.|++......+.++|++..+.+
T Consensus 128 ~D~lnHASiidG~rl---s~a~~~~f~Hn--------------------D~~~Le--~~l~~~~~~~~~~~~IvtegVfS 182 (388)
T COG0156 128 SDELNHASIIDGIRL---SRAEVRRFKHN--------------------DLDHLE--ALLEEARENGARRKLIVTEGVFS 182 (388)
T ss_pred EechhhhhHHHHHHh---CCCcEEEecCC--------------------CHHHHH--HHHHhhhccCCCceEEEEecccc
Confidence 999999998777664 47787777653 345555 55533111111569999999999
Q ss_pred CCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCC---------CCCCCCcEEEEeccccccCCCcc
Q 010538 213 FSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPD---------LSKYPVDFVVMSFYKIFGYPTGL 283 (508)
Q Consensus 213 ~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d---------~~~~~~D~~~~S~~K~~g~P~G~ 283 (508)
+.|.+.|+++|.+++++ ++++++||.+|+.|..-.. +..-.+|++++|++|.|| -.|
T Consensus 183 MdGdiApL~~l~~L~~k------------y~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlG-s~G- 248 (388)
T COG0156 183 MDGDIAPLPELVELAEK------------YGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALG-SSG- 248 (388)
T ss_pred CCCCcCCHHHHHHHHHH------------hCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhc-ccC-
Confidence 99999999999999998 9999999999998766532 222346899999999999 545
Q ss_pred eEEEEechhHhhhccccccCceEEecccchhhhhhccCcccccc-CCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHH
Q 010538 284 GALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFE-DGTASFLSIASIRHGFNLINSLTVPAICRHIASLG 362 (508)
Q Consensus 284 G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~ 362 (508)
|++..+..+++.+... .+.+. +.+.++...++...+++.+.+ ..+.++++.++.
T Consensus 249 g~v~g~~~~~d~L~~~-----------------------ar~~ifStalpP~~aaa~~~al~~l~~--~~~~r~~L~~~~ 303 (388)
T COG0156 249 GYIAGSAALIDYLRNR-----------------------ARPFIFSTALPPAVAAAALAALRILEE--GPERRERLQELA 303 (388)
T ss_pred ceeeCcHHHHHHHHHh-----------------------CCceeccCCCCHHHHHHHHHHHHHHHh--CHHHHHHHHHHH
Confidence 7888888887766543 11111 233455566677889998876 478889999999
Q ss_pred HHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhh
Q 010538 363 MYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKY 442 (508)
Q Consensus 363 ~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~ 442 (508)
.++++.++.. ++.+ .+.. ++|+.+.+.+... ...+...|.++||.+.+....+.+.+
T Consensus 304 ~~~~~~~~~~-------~~~~-~~s~--------s~I~pv~~gd~~~----a~~~s~~l~~~Gi~v~~i~~PTVp~g--- 360 (388)
T COG0156 304 AFFRSLLKAL-------GLVL-LPSE--------SPIIPVILGDEER----ALEASRALLEEGIYVSAIRPPTVPKG--- 360 (388)
T ss_pred HHHHHHHHhc-------CCcc-CCCC--------CCeeeeEeCCHHH----HHHHHHHHHHCCeeEeeecCCCCCCC---
Confidence 9999777664 3433 2322 7899888876322 23466777777999999877766642
Q ss_pred cCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 443 LGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 443 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
...+|++++..+|++||+++++++.+.
T Consensus 361 -----------------------------tarlRi~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 361 -----------------------------TARLRITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred -----------------------------cceEEEEecCCCCHHHHHHHHHHHHhh
Confidence 578999999999999999999998764
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-22 Score=205.42 Aligned_cols=326 Identities=13% Similarity=0.042 Sum_probs=214.9
Q ss_pred CCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHH
Q 010538 39 NGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALK 117 (508)
Q Consensus 39 ~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~ 117 (508)
.+.+.|+.+... .+++.+++++.+.. .... .|.. .. ...+|+.+|++++++++ +|++|+|+++++.
T Consensus 22 ~~~i~l~~~~n~~~~~~~~~~a~~~~~-~~~~-----~Y~~----~~-~~~Lr~aia~~~~v~~~--~I~it~G~~~~i~ 88 (360)
T PRK07392 22 DAILDFSASINPLGPPESVIAAIQSAL-SALR-----HYPD----PD-YRELRLALAQHHQLPPE--WILPGNGAAELLT 88 (360)
T ss_pred ccEEEeCCcCCCCCCCHHHHHHHHHHH-HHhh-----cCCC----cC-HHHHHHHHHHHhCcChh--hEEECCCHHHHHH
Confidence 457888876443 34566666654322 2111 1211 11 35788999999999998 8999999999999
Q ss_pred HHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCC
Q 010538 118 LVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP 197 (508)
Q Consensus 118 ~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~ 197 (508)
+++.++ . +|+.|++....|+ .....++..|++++.+|.+.++..... ..++++++ +.
T Consensus 89 ~~~~~l-~-~g~~vlv~~P~y~---~~~~~~~~~g~~~~~v~~~~~~~~~~~----------~~~~~~~~--~~------ 145 (360)
T PRK07392 89 WAGREL-A-QLRAVYLITPAFG---DYRRALRAFGATVKELPLPLDQPSPGL----------TLRLQTLP--PQ------ 145 (360)
T ss_pred HHHHHh-C-CCCeEEEECCCcH---HHHHHHHHcCCeEEEEecccccCCccc----------ccCHHHHH--Hh------
Confidence 999987 3 4678887775444 445556667999999998754332000 01345554 21
Q ss_pred CCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC---CCCC----CCCCCCcEEE
Q 010538 198 AGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT---QPPD----LSKYPVDFVV 270 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~---~~~d----~~~~~~D~~~ 270 (508)
.++++++++++++||||.+++.++|.+++++ +++ +|+|+++..-. .+.+ +...+--+++
T Consensus 146 -~~~~~~~~l~nP~NPTG~~~~~~~l~~l~~~------------~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i 211 (360)
T PRK07392 146 -LTPNDGLLLNNPHNPTGKLWSREAILPLLEQ------------FAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIIL 211 (360)
T ss_pred -ccCCCEEEEeCCCCCCCCCcCHHHHHHHHHH------------CCE-EEEECchhhhccCccccchHHHhhcCCCEEEE
Confidence 2467999999999999999999999999987 775 66699876311 1111 1111234888
Q ss_pred EeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHh
Q 010538 271 MSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINS 348 (508)
Q Consensus 271 ~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~ 348 (508)
.|++|.|| .+| +||++++++.++.+.... ...+.+.....++.++++- ..
T Consensus 212 ~S~SK~~~-l~GlRiG~~v~~~~~~~~~~~~~--------------------------~~~~~s~~~q~~~~~~l~~-~~ 263 (360)
T PRK07392 212 RSLTKFYS-LPGLRLGYAIAHPDRLQRWQQWR--------------------------DPWPVNGLAAAAAIAALAD-RD 263 (360)
T ss_pred Eechhhhc-CCchheeeeeCCHHHHHHHHhhC--------------------------CCCCCCHHHHHHHHHHhcc-HH
Confidence 99999998 447 899999988876654321 1123344444444445432 11
Q ss_pred cChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHH-HhhCCCe
Q 010538 349 LTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKL-ASLSGIQ 427 (508)
Q Consensus 349 ~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~-L~~~gI~ 427 (508)
-.+...+++++.++++.+.|+++ +++.+.. .. +++++++++. + ..++... ++++||.
T Consensus 264 -~~~~~~~~~~~~r~~l~~~L~~~------~~~~~~~-~~--------~~fl~~~~~~-~-----~~~l~~~ll~~~gv~ 321 (360)
T PRK07392 264 -FQQQTWAWLPPAREALFQGLASL------PGLTPLP-SA--------ANFLLVQSQG-S-----ALQLQEKLLQQHRIL 321 (360)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhC------CCcEECC-CC--------CCEEEEEcCC-C-----HHHHHHHHHhhCCEE
Confidence 13445567788888999999876 3666543 22 6788877653 1 2235555 5778999
Q ss_pred eccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 428 LRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 428 v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
+++|..+... .++++||+++ +.++.+++.+.+.+++.
T Consensus 322 v~pg~~f~~~---------------------------------~~~~iRi~~~---~~~~~~~l~~al~~~~~ 358 (360)
T PRK07392 322 IRDCLSFPEL---------------------------------GDRYFRVAVR---TEAENQRLLEALAAILA 358 (360)
T ss_pred EEeCCCCCCC---------------------------------CCCEEEEEeC---CHHHHHHHHHHHHHHhh
Confidence 9998755221 2579999999 67777888888877654
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.3e-22 Score=194.83 Aligned_cols=330 Identities=12% Similarity=0.068 Sum_probs=240.7
Q ss_pred CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCC--CCCCceEEEcCChHHHHHHHHhhcCCCCCC
Q 010538 52 YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA--SMKDYKCIFTSGATAALKLVGEAFPWSHQS 129 (508)
Q Consensus 52 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~--~~~~~~i~~t~g~t~al~~~~~~l~~~~g~ 129 (508)
.+|.+++++.+......++.|. ...++.+++..+.++-.+. +++ .|+|++|.--++.++++++ .++||
T Consensus 39 ~pp~i~~Al~~rvdhGvfGY~~-------~~~~~~~ai~~w~~~r~~~~i~~e--~i~~~p~VVpgi~~~I~~~-T~~gd 108 (388)
T COG1168 39 TPPEIIEALRERVDHGVFGYPY-------GSDELYAAIAHWFKQRHQWEIKPE--WIVFVPGVVPGISLAIRAL-TKPGD 108 (388)
T ss_pred CCHHHHHHHHHHHhcCCCCCCC-------CCHHHHHHHHHHHHHhcCCCCCcc--eEEEcCcchHhHHHHHHHh-CcCCC
Confidence 3677888876655433444442 2456788999999998876 455 8999999999999999999 68888
Q ss_pred eEEEecccccchHHHHHHHHhcCCeEEEEccCC-ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEe
Q 010538 130 SYMYTMENHNSVLGIREYALSQGAAAFAIDVEE-AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFP 208 (508)
Q Consensus 130 ~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~ 208 (508)
.|++... .|.+..+..+..|-++...|+-. ++.. .-|.++++ +++. .+++++++++
T Consensus 109 ~Vvi~tP---vY~PF~~~i~~n~R~~i~~pL~~~~~~y-------------~iD~~~LE--~~~~-----~~~vkl~iLC 165 (388)
T COG1168 109 GVVIQTP---VYPPFYNAIKLNGRKVIENPLVEDDGRY-------------EIDFDALE--KAFV-----DERVKLFILC 165 (388)
T ss_pred eeEecCC---CchHHHHHHhhcCcEEEeccccccCCcE-------------EecHHHHH--HHHh-----cCCccEEEEe
Confidence 8887764 44455566666799999999863 3322 12788998 6664 4568999999
Q ss_pred CCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCCCCCCCC-----CCcEEEEeccccccC
Q 010538 209 SECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQPPDLSKY-----PVDFVVMSFYKIFGY 279 (508)
Q Consensus 209 ~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d~~~~-----~~D~~~~S~~K~~g~ 279 (508)
++|||||.+...++|.+++. +|.+||+.||.|..|+. |...+.+... +.-+.+.|.+|+|+
T Consensus 166 nPHNP~Grvwt~eeL~~i~e---------lc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFN- 235 (388)
T COG1168 166 NPHNPTGRVWTKEELRKIAE---------LCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFN- 235 (388)
T ss_pred CCCCCCCccccHHHHHHHHH---------HHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeecccccc-
Confidence 99999999999999888887 78889999999999974 4344433322 33478889999999
Q ss_pred CCc--ceEEEEechhH-hhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHH
Q 010538 280 PTG--LGALIMRNDAA-KLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICR 356 (508)
Q Consensus 280 P~G--~G~l~~~~~~~-~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~ 356 (508)
-+| ++.+++.++.. .+....+ .+.-.+.+|..++.+..+|.+.-..+ ++++.+
T Consensus 236 laGL~~a~~Ii~n~~lr~~~~~~l-----------------------~~~~~~~~n~lg~~A~~aAY~~G~~W-Ld~L~~ 291 (388)
T COG1168 236 LAGLKCAYIIISNRELRAKFLKRL-----------------------KRNGLHGPSALGIIATEAAYNQGEPW-LDELLE 291 (388)
T ss_pred chhhhheeEEecCHHHHHHHHHHH-----------------------HHhcCCCCchHHHHHHHHHHHhchHH-HHHHHH
Confidence 557 78888876653 2222211 11223567888888888888865544 789999
Q ss_pred HHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHH-HhhCCCeeccCCCCC
Q 010538 357 HIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKL-ASLSGIQLRTGCFCN 435 (508)
Q Consensus 357 ~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~-L~~~gI~v~~g~~~~ 435 (508)
++..+++++.+.+.+.- |++++..|++ ...+|+++.... ++...+.+. +++.+|.+..|..+.
T Consensus 292 yl~~N~~~~~~~l~~~~-----P~v~v~~p~g--------TYL~WLD~r~l~---l~d~~l~~~ll~~akVal~~G~~FG 355 (388)
T COG1168 292 YLKDNRDYVADFLNKHL-----PGVKVTEPQG--------TYLAWLDCRELG---LDDSELAEFLLEEAKVALSPGSTFG 355 (388)
T ss_pred HHHHHHHHHHHHHHhhC-----CCcEEecCCC--------ceeeeeeccccC---CChHHHHHHHHHhhcEeccCCCccC
Confidence 99999999999997763 6899998876 688898887542 221235544 467899999998654
Q ss_pred chHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 436 PGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 436 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
. ...|.+|+++.- +.+-+++.++.|+.-+
T Consensus 356 ~---------------------------------~g~gf~RlN~ac--pr~~L~eal~ri~~al 384 (388)
T COG1168 356 E---------------------------------EGSGFVRLNFAC--PRAILEEALERLKRAL 384 (388)
T ss_pred c---------------------------------CCCceEEEecCC--CHHHHHHHHHHHHHHH
Confidence 4 236899999984 6667777776666443
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-22 Score=208.85 Aligned_cols=346 Identities=12% Similarity=0.032 Sum_probs=216.5
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCC--CCCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA--SMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~--~~~~~~i~~t~g~t~a 115 (508)
++.+.|+.+.... +++...+++.+.... .....|.......++.+++.+.+.+.+|. ++++ +|++|+|++++
T Consensus 29 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~-~i~~t~G~~~~ 103 (395)
T PRK08175 29 EDIIDFSMGNPDGPTPPHIVEKLCEVAQR----PDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPES-EAIVTIGSKEG 103 (395)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHhC----CCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-cEEEccCcHHH
Confidence 4566776654332 344455555443321 11112222111223333333334333343 4431 59999999999
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPER 195 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~ 195 (508)
+.+++.++ ..+|++|+++...|+.+..... ..|+++..+|.+.++.. .++++ +.+++
T Consensus 104 l~~~~~~~-~~~gd~Vlv~~P~y~~~~~~~~---~~g~~~~~v~~~~~~~~----------------~~~l~--~~l~~- 160 (395)
T PRK08175 104 LAHLMLAT-LDHGDTVLVPNPSYPIHIYGAV---IAGAQVRSVPLVEGVDF----------------FNELE--RAIRE- 160 (395)
T ss_pred HHHHHHHh-CCCCCEEEEcCCCCcchHHHHH---HcCCeEEEEecccCCCc----------------HHHHH--HHHhh-
Confidence 99999888 6889999999988887655543 35899999998754332 44555 44321
Q ss_pred CCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCCCCCCC----CCCc
Q 010538 196 DPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQPPDLSK----YPVD 267 (508)
Q Consensus 196 ~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d~~~----~~~D 267 (508)
..++++++++++++||||.++|.+++.++++ +|+++|+++|+|++++. +..+..+.. .+..
T Consensus 161 --~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~---------~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~ 229 (395)
T PRK08175 161 --SYPKPKMMILGFPSNPTAQCVELEFFEKVVA---------LAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVA 229 (395)
T ss_pred --ccCCceEEEEeCCCCCCCCCCCHHHHHHHHH---------HHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCE
Confidence 2357899999999999999999976666555 44559999999999853 222222221 1344
Q ss_pred EEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHH
Q 010538 268 FVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNL 345 (508)
Q Consensus 268 ~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~ 345 (508)
+++.|++|.||.| | +||++.++++++.+..... ....++. .+...++..+++.
T Consensus 230 i~~~S~SK~~g~p-GlRiG~~~~~~~l~~~~~~~~~-----------------------~~~~~~~-~~~q~~~~~~l~~ 284 (395)
T PRK08175 230 VEFFTLSKSYNMA-GWRIGFMVGNPELVSALARIKS-----------------------YHDYGTF-TPLQVAAIAALEG 284 (395)
T ss_pred EEEeeccccccCc-chhheeeeCCHHHHHHHHHHHh-----------------------hcccCCC-cHHHHHHHHHHhC
Confidence 7789999999845 6 8999999888776553310 0011222 2223333334432
Q ss_pred HHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHH-HhhC
Q 010538 346 INSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKL-ASLS 424 (508)
Q Consensus 346 ~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~-L~~~ 424 (508)
. +..++.+++++++.++++.+.|+.. ++.+..+.+ ++++++++++.... .+..++... ++++
T Consensus 285 ~-~~~~~~~~~~~~~~~~~~~~~L~~~-------~~~~~~p~~--------g~~i~i~l~~~~~~-~~~~~~~~~l~~~~ 347 (395)
T PRK08175 285 D-QQCVRDIAEQYKRRRDVLVKGLHEA-------GWMVEMPKA--------SMYVWAKIPEPYAA-MGSLEFAKKLLNEA 347 (395)
T ss_pred c-HHHHHHHHHHHHHHHHHHHHHHHHc-------CCcccCCCE--------EEEEEEECCcccCC-CCHHHHHHHHHHhC
Confidence 1 1235677788888899999999876 455544433 78999998753110 123456654 5678
Q ss_pred CCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 425 GIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 425 gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
||.|.+|..+... .++++|+++. .+.+++...++.|.++++
T Consensus 348 gv~v~p~~~f~~~---------------------------------~~~~lRis~~--~~~~~~~~al~~l~~~l~ 388 (395)
T PRK08175 348 KVCVSPGIGFGDY---------------------------------GDTHVRFALI--ENRDRIRQAIRGIKAMFR 388 (395)
T ss_pred CEEEeCchhhCcC---------------------------------CCCeEEEEeC--CCHHHHHHHHHHHHHHHH
Confidence 9999998754221 2578999997 477888888888777664
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-22 Score=205.91 Aligned_cols=328 Identities=11% Similarity=0.081 Sum_probs=212.9
Q ss_pred CCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC--------CCCCCceEEEcC
Q 010538 40 GTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN--------ASMKDYKCIFTS 110 (508)
Q Consensus 40 ~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~--------~~~~~~~i~~t~ 110 (508)
..+.|+.+-... +++.+++++.+.. ... .....|+. .....+|+++|++++ ++++ +|++|+
T Consensus 29 ~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~Y~~-----~G~~~Lr~aia~~~~~~~~~~~~v~~~--~I~it~ 98 (374)
T PRK02610 29 QLDRLDTNEFPYDLPPDLKQKLAWLY-QQG--IESNRYPD-----GGHEALKQAIAEYVNESAAGSSQITPA--NISVGN 98 (374)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHH-hhc--ccccCCCC-----CchHHHHHHHHHHhCccccccCCCCHH--HEEEcC
Confidence 467788776654 4566666654432 210 00111211 124667888888887 7777 899999
Q ss_pred ChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc-cCccccccccccccccccchhhhhcC
Q 010538 111 GATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA-VDNDGLSESLVTSTKISLLPIQRRKG 189 (508)
Q Consensus 111 g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~-~~~~~l~~~~~~~~~~~~d~~~l~~~ 189 (508)
|+++++..++.++...+++.|++....|+ .....++..|++++.++.+.+ ..+ |+++++
T Consensus 99 Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~---~~~~~~~~~g~~~~~~~~~~~~~~~---------------d~~~l~-- 158 (374)
T PRK02610 99 GSDELIRSLLIATCLGGEGSILVAEPTFS---MYGILAQTLGIPVVRVGRDPETFEI---------------DLAAAQ-- 158 (374)
T ss_pred ChHHHHHHHHHHHcCCCCCeEEEcCCChH---HHHHHHHHcCCEEEEecCCcccCCC---------------CHHHHH--
Confidence 99999988777763333347887775544 444555667999999998642 233 677887
Q ss_pred CCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC--CC-CCCCCCCC
Q 010538 190 ASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT--QP-PDLSKYPV 266 (508)
Q Consensus 190 ~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~--~~-~d~~~~~~ 266 (508)
+++++ ...+++++|++++++||||.+++.+++.++++ ++ ++++||+|+++..-. .. ..+...+-
T Consensus 159 ~~~~~--~~~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~---------~~--~~~~iI~De~Y~~~~~~~~~~~~~~~~~ 225 (374)
T PRK02610 159 SAIEQ--TQNPPVRVVFVVHPNSPTGNPLTAAELEWLRS---------LP--EDILVVIDEAYFEFSQTTLVGELAQHPN 225 (374)
T ss_pred HHHHh--hcCCCceEEEEeCCCCCCCCCCCHHHHHHHHh---------cc--CCcEEEEeccccccCccchHHHHhcCCC
Confidence 55421 01257899999999999999999999998876 33 489999999986321 11 11222122
Q ss_pred cEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHH
Q 010538 267 DFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFN 344 (508)
Q Consensus 267 D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~ 344 (508)
-+++.|++|.|| .+| +||+++++++++.+...... .+.+.....++..+++
T Consensus 226 ~ivi~SfSK~~g-~~GlRiG~~v~~~~l~~~l~~~~~~--------------------------~~~~~~~q~a~~~~l~ 278 (374)
T PRK02610 226 WVILRTFSKAFR-LAAHRVGYAIGHPELIAVLEKVRLP--------------------------YNLPSFSQLAAQLALE 278 (374)
T ss_pred EEEEEecchhcc-CcccceeeeecCHHHHHHHHHhcCC--------------------------CCCCHHHHHHHHHHhc
Confidence 377899999998 447 89999988887766543111 1122333334444544
Q ss_pred HHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhC
Q 010538 345 LINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLS 424 (508)
Q Consensus 345 ~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~ 424 (508)
.... ..+.+. ++.+.++.+.+.|+++ +++.+. |+. +++++++++.. .+..++.+.|.++
T Consensus 279 ~~~~-~~~~~~-~~~~~r~~l~~~L~~~------~~~~~~-p~~--------g~f~~~~l~~~----~~~~~~~~~l~~~ 337 (374)
T PRK02610 279 HRQE-LLAAIP-EILQERDRLYQALQEL------PQLRVW-PSA--------ANFLYLRLSQD----AALAALHQALKAQ 337 (374)
T ss_pred CHHH-HHHHHH-HHHHHHHHHHHHHHhC------CCcEeC-CCc--------ceEEEEeCCCC----CCHHHHHHHHHHC
Confidence 3222 123333 3344467788888776 356543 433 78899888642 2334688889999
Q ss_pred CCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 425 GIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 425 gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
||.++.+ .+++|||++ +.++++++++.|+++++-
T Consensus 338 gi~v~~~----------------------------------------~~~lRls~~---~~~~~~~~l~~l~~~l~~ 371 (374)
T PRK02610 338 GTLVRHT----------------------------------------GGGLRITIG---TPEENQRTLERLQAALTQ 371 (374)
T ss_pred CEEEEeC----------------------------------------CCeEEEeCC---CHHHHHHHHHHHHHHHhh
Confidence 9998642 467999998 568889999998877653
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-22 Score=210.39 Aligned_cols=339 Identities=12% Similarity=0.058 Sum_probs=208.3
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCC-CCCccchhhhhhHHHHHHHHHHHHHc---CCCCCCceEEEcCChH
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGN-PHSQSDISLATCDIVRAAREQVLDYF---NASMKDYKCIFTSGAT 113 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~r~~la~~~---~~~~~~~~i~~t~g~t 113 (508)
++.+.|+.+.... +++.+.+++.+ .+.+.... ....|.. ......+|+++|+++ +++++ +|++|+|++
T Consensus 33 ~~~i~l~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~Y~p----~~g~~~lr~aia~~~~~~~~~~d--~I~it~Ga~ 105 (402)
T TIGR03542 33 ADIIRLGIGDTTQPLPASVIEAFHN-AVDELASEETFRGYGP----EQGYPFLREAIAENDYRGRIDPE--EIFISDGAK 105 (402)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHH-HHhcccccccccCCCC----CCCCHHHHHHHHHHHHhcCCCHH--HEEECCCcH
Confidence 5789999876554 35555555543 33322111 1112211 123566788888876 68888 899999999
Q ss_pred HHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCC-----------eEEEEccCCccCccccccccccccccccc
Q 010538 114 AALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGA-----------AAFAIDVEEAVDNDGLSESLVTSTKISLL 182 (508)
Q Consensus 114 ~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~-----------~v~~v~~~~~~~~~~l~~~~~~~~~~~~d 182 (508)
+++.++. .+ +.+|+.|++....|+.+. ..++..|+ +++.+|.+....+.
T Consensus 106 ~al~~l~-~l-~~~gd~Vlv~~P~y~~~~---~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~--------------- 165 (402)
T TIGR03542 106 CDVFRLQ-SL-FGSDNTVAVQDPVYPAYV---DSNVMAGRAGVLDDDGRYSKITYLPCTKENNFI--------------- 165 (402)
T ss_pred HHHHHHH-Hh-cCCCCEEEEeCCCCcchH---HHHHHcCCccccccccccceEEEeecchhhCCC---------------
Confidence 9999875 44 467899998886666554 44445677 88888875432221
Q ss_pred hhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCC
Q 010538 183 PIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQP 258 (508)
Q Consensus 183 ~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~ 258 (508)
++ +. . .+++++|++++++||||.+++.+++.++++ +|++++++||+|+++.. +..+
T Consensus 166 ~~-~~--------~--~~~~~~i~l~nP~NPTG~~~s~~~~~~l~~---------~a~~~~~~iI~De~y~~~~~~~~~~ 225 (402)
T TIGR03542 166 PD-LP--------E--EPKIDIIYLCSPNNPTGTVLTKEQLKELVD---------YANEHGSLILFDAAYSAFISDPSLP 225 (402)
T ss_pred CC-cc--------c--cCCceEEEEeCCCCCCCccCCHHHHHHHHH---------HHHHcCeEEEEEchhhhhccCCCCC
Confidence 11 11 0 246799999999999999999777666665 45559999999999863 2122
Q ss_pred CCCCCC----CCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCC
Q 010538 259 PDLSKY----PVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTAS 332 (508)
Q Consensus 259 ~d~~~~----~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~ 332 (508)
..+... +.-+++.|++|.|| .+| +||++++++++......... .+.. .......+.+
T Consensus 226 ~~~~~~~~~~~~vi~~~SfSK~~g-~pGlRiG~~i~~~~l~~~~~~~~~~-----------~~~~-----~~~~~~~~~s 288 (402)
T TIGR03542 226 HSIFEIPGAKECAIEFRSFSKTAG-FTGVRLGWTVVPKELTYADGHSVIQ-----------DWER-----RQCTKFNGAS 288 (402)
T ss_pred cchhhCCCCcccEEEEecCccccC-CCCcceEEEEecHHHhhcchhhHHH-----------HHHH-----HhhhcccCCC
Confidence 222221 23477899999998 447 89999988765111000000 0000 0000011223
Q ss_pred hhHHHHHHHHHHHHHhcC---hHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCC
Q 010538 333 FLSIASIRHGFNLINSLT---VPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDG 409 (508)
Q Consensus 333 ~~~~~~l~~al~~~~~~g---~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 409 (508)
.....++. .++.+.+ ..+..+.+.+.++++.+.|++. ++++..+.+ ++++++++++.
T Consensus 289 ~~~q~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-------~~~~~~~~~--------~~f~~v~l~~~-- 348 (402)
T TIGR03542 289 YPVQRAAE---AAYAGEGLQPILEAISYYMENARILRKALEAA-------GFKVYGGEH--------APYLWVKTPEG-- 348 (402)
T ss_pred HHHHHHHH---HHHcCcchhHHHHHHHHHHHHHHHHHHHHHhc-------CceecCCCc--------eeEEEEECCCC--
Confidence 23222222 2222211 3445566778888888888875 466554332 78999998752
Q ss_pred CccCHHHHHHHH-hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHH
Q 010538 410 SWFGYREVEKLA-SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDA 488 (508)
Q Consensus 410 ~~~~~~~l~~~L-~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev 488 (508)
++..++.+.| ++.||.+++|..|... ..+++||++.. +.+++
T Consensus 349 --~~~~~l~~~l~~~~gv~v~pg~~f~~~---------------------------------~~~~iRis~~~--~~~~l 391 (402)
T TIGR03542 349 --ISSWDFFDFLLYQYHVVGTPGSGFGPS---------------------------------GEGFVRFSAFG--KRENI 391 (402)
T ss_pred --CCHHHHHHHHHHhCCEEEeCchhhCCC---------------------------------CCCEEEEEecC--CHHHH
Confidence 2223455555 5689999998654211 25789999653 78999
Q ss_pred HHHHHhhhhh
Q 010538 489 KVNRCSSFDF 498 (508)
Q Consensus 489 ~~l~~~~~~~ 498 (508)
+..++.|++.
T Consensus 392 ~~~l~~l~~~ 401 (402)
T TIGR03542 392 VEACERIKEA 401 (402)
T ss_pred HHHHHHHHhh
Confidence 9998888754
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=211.73 Aligned_cols=345 Identities=10% Similarity=0.056 Sum_probs=212.3
Q ss_pred CCCeeeeCCCCCCC-CHHHHHHHHHHhhccccCC-CCCccchhhhhhHHHHHHHHHHHHHc------CCCCCCceEEEcC
Q 010538 39 NGTVYLDHAGATLY-SELQMEAIFRDFTTNVYGN-PHSQSDISLATCDIVRAAREQVLDYF------NASMKDYKCIFTS 110 (508)
Q Consensus 39 ~~~iyld~~~~~~~-~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~r~~la~~~------~~~~~~~~i~~t~ 110 (508)
++.+.|+.+-.... ++.+.+++.+ .......+ ....|... .....+|+++|+++ +++++ +|++|+
T Consensus 34 ~~~i~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Y~~~----~G~~~LR~aia~~~~~~~g~~~~~~--~I~it~ 106 (409)
T PRK07590 34 AKIIRLGIGDVTQPLPPAVIEAMHK-AVDEMGTAETFRGYGPE----QGYDFLREKIAENDYQARGCDISAD--EIFISD 106 (409)
T ss_pred CceEEecCcCCCCCCCHHHHHHHHH-HHhcccccCCccCCCCC----CCCHHHHHHHHHHHHHhcCCcCChh--hEEECC
Confidence 46788887765544 4444555433 33221111 11122111 12345667777764 67888 899999
Q ss_pred ChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCe-----------EEEEccCCccCcccccccccccccc
Q 010538 111 GATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAA-----------AFAIDVEEAVDNDGLSESLVTSTKI 179 (508)
Q Consensus 111 g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~-----------v~~v~~~~~~~~~~l~~~~~~~~~~ 179 (508)
|+++++.++.. + ..+|++|++....|+.+....+. .|.+ ++.+|++.+..+.
T Consensus 107 Ga~~al~~l~~-~-~~~gd~V~v~~P~Y~~~~~~~~~---~g~~~~~~~~~~~~~~~~v~~~~~~~~~------------ 169 (409)
T PRK07590 107 GAKCDTGNILD-I-FGPDNTIAVTDPVYPVYVDTNVM---AGRTGEANEDGRYSGIVYLPCTAENNFV------------ 169 (409)
T ss_pred CHHHHHHHHHH-h-cCCCCEEEEeCCCCcchHHHHHH---cCCcccccccccccceeEeecccccCCc------------
Confidence 99999998754 4 36899999988777766655444 4665 8888876433220
Q ss_pred ccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----C
Q 010538 180 SLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----V 255 (508)
Q Consensus 180 ~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g 255 (508)
+ ++. .+++++|++++++||||.+++.+++.++++ +|++++++||+|++++. +
T Consensus 170 ---~-d~~-----------~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~---------~a~~~~~~iI~De~Y~~~~~~~ 225 (409)
T PRK07590 170 ---P-ELP-----------EEKVDIIYLCFPNNPTGTVLTKEQLKAWVD---------YAKENGSLILFDAAYEAFISDP 225 (409)
T ss_pred ---c-cCc-----------ccCceEEEEeCCCCCcCCcCCHHHHHHHHH---------HHHHcCeEEEEEccchhhccCC
Confidence 0 111 256899999999999999999998888877 56679999999999863 2
Q ss_pred CCCCCCCCC----CCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCC
Q 010538 256 TQPPDLSKY----PVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDG 329 (508)
Q Consensus 256 ~~~~d~~~~----~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 329 (508)
..+..+... +.-+++.|++|.+|.| | +||+++++++++.+...-..... ..+.. .......
T Consensus 226 ~~~~~~~~~~~~~~~vi~~~SfSK~~~~p-GlRiG~~i~~~~li~~~~~~~~~~~~-------~~~~~-----~~~~~~~ 292 (409)
T PRK07590 226 SLPHSIYEIEGARECAIEFRSFSKTAGFT-GTRCAYTVVPKELKGKTSDGEGVSLN-------SLWNR-----RQSTKFN 292 (409)
T ss_pred CCCcchhhCCCcccceEEEecCccccCCc-CceeEEEEcCHHHhhhccccchhhhH-------HHHHH-----HHhhccc
Confidence 222223222 2347789999999834 7 89999998887532110000000 00000 0000011
Q ss_pred CCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCC
Q 010538 330 TASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDG 409 (508)
Q Consensus 330 t~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 409 (508)
+.+.....++..++..-....+++.++++++.++++.+.|++. ++.+..+.+ ++++|+++++.
T Consensus 293 ~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-------~~~~~~~~g--------~~f~wi~~~~~-- 355 (409)
T PRK07590 293 GVSYIVQRAAEAVYSPEGKAQIKELIDYYMENAKIIREGLESA-------GFEVYGGVN--------APYIWVKTPDG-- 355 (409)
T ss_pred CcCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHhc-------CCceecCCc--------ceEEEEECCCC--
Confidence 2333334444334431001125666778888889999999875 466554433 78999998753
Q ss_pred CccCHHHHHHHH-hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHH
Q 010538 410 SWFGYREVEKLA-SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDA 488 (508)
Q Consensus 410 ~~~~~~~l~~~L-~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev 488 (508)
++..++.+.| +++||.+.+|..|... ..+++|||+ ..+.+++
T Consensus 356 --~~~~~~~~~l~~~~gv~v~pg~~f~~~---------------------------------~~~~iRi~~--~~~~~~l 398 (409)
T PRK07590 356 --MSSWDFFDKLLQEANVVGTPGSGFGPS---------------------------------GEGYFRLSA--FGSRENV 398 (409)
T ss_pred --CCHHHHHHHHHHHCCEEEeChhHhCCC---------------------------------CCCEEEEEc--cCCHHHH
Confidence 2223455554 5789999998755221 257899996 3588999
Q ss_pred HHHHHhhhhh
Q 010538 489 KVNRCSSFDF 498 (508)
Q Consensus 489 ~~l~~~~~~~ 498 (508)
+..++.|.+.
T Consensus 399 ~~~l~rl~~~ 408 (409)
T PRK07590 399 LEAMERIKKA 408 (409)
T ss_pred HHHHHHHHhh
Confidence 9999888764
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.9e-23 Score=217.24 Aligned_cols=354 Identities=11% Similarity=0.064 Sum_probs=224.8
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhcc-ccCCC-----C--CccchhhhhhHHHHHHHHHHHHHcC--------CCCC
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTN-VYGNP-----H--SQSDISLATCDIVRAAREQVLDYFN--------ASMK 102 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~-~~~~~-----~--~~~~~~~~~~~~~~~~r~~la~~~~--------~~~~ 102 (508)
++.|.|+.+-...+. ..+.+.++..... ..... . ..|.. ......+|+.+|++++ ++++
T Consensus 38 ~g~i~L~~~En~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~----~~G~~~LR~aiA~~l~~~~~~~~~v~~~ 112 (468)
T PLN02450 38 SGIIQMGLAENQLSF-DLIESWLAKNPDAAGLKRNGQSIFRELALFQD----YHGLPAFKNALAEFMSEIRGNKVTFDPN 112 (468)
T ss_pred CeeEEeehhHhHhhH-HHHHHHHHhCchhhhcccccccchhhhhcCCC----CCChHHHHHHHHHHHHHhhCCCCCcChH
Confidence 468999987766544 5555555432110 00000 0 01111 1123456677777664 5777
Q ss_pred CceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccc
Q 010538 103 DYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLL 182 (508)
Q Consensus 103 ~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d 182 (508)
+|++|+|+++++.+++.++ ..+|+.|+++...|+.+...... ..|++++.||.+.+..+ .++
T Consensus 113 --~Iiit~Ga~~al~~l~~~l-~~pGd~Vlv~~P~Y~~~~~~~~~--~~g~~~v~v~~~~~~~~-------------~~~ 174 (468)
T PLN02450 113 --KLVLTAGATSANETLMFCL-AEPGDAFLLPTPYYPGFDRDLKW--RTGVEIVPIHCSSSNGF-------------QIT 174 (468)
T ss_pred --HeEEccChHHHHHHHHHHh-CCCCCEEEECCCCCCchHHHHhh--cCCcEEEEEecCCccCC-------------cCC
Confidence 8999999999999999998 68899999998777776544331 36899999998632222 114
Q ss_pred hhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC---CC-CC
Q 010538 183 PIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC---VT-QP 258 (508)
Q Consensus 183 ~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~---g~-~~ 258 (508)
+++++ +++.+....+.+++++++++++||||.+++.+.+.++++ +|++++++||+|.+++. .. ..
T Consensus 175 ~~~le--~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~---------~a~~~~~~iI~DE~Y~~~~f~~~~~ 243 (468)
T PLN02450 175 ESALE--EAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVD---------FITAKNIHLISDEIYSGTVFDSPGF 243 (468)
T ss_pred HHHHH--HHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHH---------HHHHCCcEEEEEccccccccCCCCc
Confidence 66666 444221112347899999999999999999998888776 56669999999999873 11 11
Q ss_pred CC---C-C--------CCCCcEEEEeccccccCCCc--ceEEEEechh-HhhhccccccCceEEecccchhhhhhccCcc
Q 010538 259 PD---L-S--------KYPVDFVVMSFYKIFGYPTG--LGALIMRNDA-AKLLKNTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 259 ~d---~-~--------~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
.+ + . ..+--+++.|++|.|| .+| +|+++++++. .+.+...
T Consensus 244 ~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~-l~GlRiG~li~~~~~l~~~~~~~------------------------ 298 (468)
T PLN02450 244 VSVMEVLKDRKLENTDVSNRVHIVYSLSKDLG-LPGFRVGAIYSNDEMVVSAATKM------------------------ 298 (468)
T ss_pred ccHHHHhhhcccccCCCCCcEEEEEeccccCC-CCCccEEEEEECCHHHHHHHHHH------------------------
Confidence 11 1 0 1123478999999998 557 8999998664 3322211
Q ss_pred ccccCCCCChhHHHHHHHHHHHH--HhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEE
Q 010538 324 ELFEDGTASFLSIASIRHGFNLI--NSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVS 401 (508)
Q Consensus 324 ~~~~~gt~~~~~~~~l~~al~~~--~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 401 (508)
. ..+..+.....++..+++-- .+..++..++++.+.++.+.+.|++. ++.+..+.+ +.++|
T Consensus 299 ~--~~~~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~-------gi~~~~~~~--------g~flw 361 (468)
T PLN02450 299 S--SFGLVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAA-------GIKCLKSNA--------GLFCW 361 (468)
T ss_pred h--hcCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCcccCCCc--------eEEEE
Confidence 0 01122333344444343310 01124667788888899999999876 566554433 66999
Q ss_pred EEeeCC-CCCcc-CHHHHH-HHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEe
Q 010538 402 FNLKRP-DGSWF-GYREVE-KLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVS 478 (508)
Q Consensus 402 ~~~~~~-~~~~~-~~~~l~-~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis 478 (508)
++++.. +...+ ...++. +.++++||.+.+|..|... .++++|++
T Consensus 362 i~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~---------------------------------~~g~~Rl~ 408 (468)
T PLN02450 362 VDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCT---------------------------------EPGWFRVC 408 (468)
T ss_pred EEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCCC---------------------------------CCCEEEEE
Confidence 998642 11111 112233 4456789999999866332 26899999
Q ss_pred cCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 479 FGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 479 ~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
++. .+.++++..++.|+++++-+
T Consensus 409 f~~-~~~~~l~~~l~ri~~~l~~~ 431 (468)
T PLN02450 409 FAN-MSEETLDLAMKRLKSFVESD 431 (468)
T ss_pred ecC-CCHHHHHHHHHHHHHHHHhc
Confidence 996 45799999999999887643
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=215.82 Aligned_cols=307 Identities=12% Similarity=0.128 Sum_probs=202.0
Q ss_pred HHHHHHHHHHHcC--------CCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEE
Q 010538 86 VRAAREQVLDYFN--------ASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFA 157 (508)
Q Consensus 86 ~~~~r~~la~~~~--------~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~ 157 (508)
...+|+.+|++++ ++++ +|++|+|+++|+.+++.++ ..+|+.|+++...|+.+...+. .+.|++++.
T Consensus 96 ~~~LR~aiA~~l~~~~g~~v~v~pe--~Ivit~Ga~~al~~l~~~l-~~pGD~Vlv~~P~Y~~~~~~~~--~~~G~~vv~ 170 (496)
T PLN02376 96 LKKFRQAIAHFMGKARGGKVTFDPE--RVVMSGGATGANETIMFCL-ADPGDVFLIPSPYYAAFDRDLR--WRTGVEIIP 170 (496)
T ss_pred cHHHHHHHHHHHHHHhCCCCcCChh--hEEEccchHHHHHHHHHHh-CCCCCEEEECCCCccchHHHHH--hhCCCEEEE
Confidence 3456666666654 6788 8999999999999999999 6889999999877777654332 136999999
Q ss_pred EccCCc--cCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccc
Q 010538 158 IDVEEA--VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILE 235 (508)
Q Consensus 158 v~~~~~--~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~ 235 (508)
||++.. ..+ +++.++ .++.+....+.++++|++++++||||.++|.+++.++++
T Consensus 171 v~~~~~~~~~~---------------~~~~le--~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~------- 226 (496)
T PLN02376 171 VPCSSSDNFKL---------------TVDAAD--WAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVR------- 226 (496)
T ss_pred EeCCCCccCcC---------------CHHHHH--HHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHH-------
Confidence 998632 223 566665 332110111357899999999999999999998888777
Q ss_pred cCCCCCCCeEEEEeccccC----CCCCCCCCCC---------CCc--EEEEeccccccCCCc--ceEEEEechhHhh-hc
Q 010538 236 ISPFSKGRWMVLIDAAKGC----VTQPPDLSKY---------PVD--FVVMSFYKIFGYPTG--LGALIMRNDAAKL-LK 297 (508)
Q Consensus 236 ~~~~~~~g~~vivD~a~~~----g~~~~d~~~~---------~~D--~~~~S~~K~~g~P~G--~G~l~~~~~~~~~-l~ 297 (508)
+|++++++||+|++++. +...+++... +.+ +++.|++|.|| .+| +|+++..++.+.. ++
T Consensus 227 --~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~g-lpGlRvG~li~~~~~l~~~~~ 303 (496)
T PLN02376 227 --FVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMG-LPGFRVGIVYSFNDSVVSCAR 303 (496)
T ss_pred --HHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCC-CCcceEEEEEECCHHHHHHHH
Confidence 56669999999999874 2122221111 112 45789999998 447 8999996554322 21
Q ss_pred cccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHH---HHHhcChHHHHHHHHHHHHHHHHHHhcccC
Q 010538 298 NTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFN---LINSLTVPAICRHIASLGMYVRKVLLSLRH 374 (508)
Q Consensus 298 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~---~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~ 374 (508)
.. . ..+..+.....++...++ ++.+ .+...++++.+..+.+.+.|++.
T Consensus 304 ~~------------------------~--~~~~vs~~~Q~a~~~~L~d~~~~~~-~l~~~r~~l~~r~~~l~~~L~~~-- 354 (496)
T PLN02376 304 KM------------------------S--SFGLVSSQTQLMLASMLSDDQFVDN-FLMESSRRLGIRHKVFTTGIKKA-- 354 (496)
T ss_pred HH------------------------h--hcCCCCHHHHHHHHHHhCChhHHHH-HHHHHHHHHHHHHHHHHHHHHHC--
Confidence 11 0 011223333333333332 1111 24455777788888888888875
Q ss_pred CCCCceEEEecCCCCCcccCCCCceEEEEeeCC-CC-Ccc-CHHHHHHHH-hhCCCeeccCCCCCchHHHhhcCCChhhh
Q 010538 375 ENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRP-DG-SWF-GYREVEKLA-SLSGIQLRTGCFCNPGACAKYLGLSHSDL 450 (508)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~~~-~~~~l~~~L-~~~gI~v~~g~~~~~~~~~~~~~~~~s~~ 450 (508)
++++..+.+ +.++|++++.. .. ..+ ...++.+.| ++.||.+.+|..|...
T Consensus 355 -----gi~~~~~~a--------G~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~------------- 408 (496)
T PLN02376 355 -----DIACLTSNA--------GLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCT------------- 408 (496)
T ss_pred -----CCcccCCCc--------eEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccCCC-------------
Confidence 566655543 78999998642 11 111 123455555 4569999999866321
Q ss_pred hhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 451 LSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
.++++||+++.. +.++++..++.|+++++
T Consensus 409 --------------------~~g~~Ri~fa~~-~~~~l~~al~rl~~~l~ 437 (496)
T PLN02376 409 --------------------EPGWFRICFANM-DDDTLHVALGRIQDFVS 437 (496)
T ss_pred --------------------CCCEEEEEeeCC-CHHHHHHHHHHHHHHHH
Confidence 268999999953 46889999998888774
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.3e-22 Score=205.59 Aligned_cols=344 Identities=15% Similarity=0.109 Sum_probs=214.0
Q ss_pred chHHHHHHhhccCC----CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC-
Q 010538 25 SIDQIRATEFKRLE----NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN- 98 (508)
Q Consensus 25 ~~~~~r~~~f~~~~----~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~- 98 (508)
.+..+|+ .+..+. .+.+.|+.+.... +++.+.+++.+.. ... ..|........+.+++.+.+++..|
T Consensus 7 ~~~~~~~-~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~a~~~~~-~~~-----~~Y~~~~G~~~lr~aia~~l~~~~g~ 79 (374)
T PRK05839 7 PFEKLRE-LLKEITPNKEYKGLDLTIGEPQFETPKFIQDALKNNA-HLL-----NKYPKSAGEESLREAQRGFFKRRFKI 79 (374)
T ss_pred hHHHHHH-HHHHhhhcCCCCeEEcCCCCCCCCCCHHHHHHHHHHh-hcc-----CCCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 4556666 655332 3788888876553 3444444443321 111 1122111223444555555566556
Q ss_pred -CCCCCceEEEcCChHHHHHHHHhhcCC-CCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccc
Q 010538 99 -ASMKDYKCIFTSGATAALKLVGEAFPW-SHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTS 176 (508)
Q Consensus 99 -~~~~~~~i~~t~g~t~al~~~~~~l~~-~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~ 176 (508)
++++ +|++|+|+++++..++.++.. ++|+.|+++...|+.+... ++..|++++.+|.+.+..+.
T Consensus 80 ~~~~~--~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~---~~~~g~~v~~v~~~~~~~~~--------- 145 (374)
T PRK05839 80 ELKEN--ELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGA---AIASRAKVLLMPLTKENDFT--------- 145 (374)
T ss_pred CCCcc--eEEEecCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHH---HHhcCCEEEEeecccccCCc---------
Confidence 5777 899999999999998887643 5789999887555555444 45679999999987433220
Q ss_pred cccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC
Q 010538 177 TKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT 256 (508)
Q Consensus 177 ~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~ 256 (508)
+|....+ .+++++|++++++||||.+++.+++.++++ +|+++|++||+|++++.-.
T Consensus 146 ----~d~~~~~-----------~~~~k~v~i~nP~NPTG~~~s~~~l~~i~~---------~~~~~~~~ii~DE~Y~~~~ 201 (374)
T PRK05839 146 ----PSLNEKE-----------LQEVDLVILNSPNNPTGRTLSLEELIEWVK---------LALKHDFILINDECYSEIY 201 (374)
T ss_pred ----CCcchhh-----------hccccEEEEeCCCCCcCcccCHHHHHHHHH---------HHHHcCCEEEeccchhhcc
Confidence 0111111 135799999999999999999998888877 5666999999999976311
Q ss_pred ---CCCCCC---------CCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCc
Q 010538 257 ---QPPDLS---------KYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGV 322 (508)
Q Consensus 257 ---~~~d~~---------~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~ 322 (508)
...++. ..+--+++.|++|.|+.| | +||+++++++++.+.....
T Consensus 202 ~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~-GlRiG~ii~~~~~~~~~~~~~~--------------------- 259 (374)
T PRK05839 202 ENTPPPSLLEASILVGNESFKNVLVINSISKRSSAP-GLRSGFIAGDASILKKYKAYRT--------------------- 259 (374)
T ss_pred cCCCCCCHhhhhcccCccccCcEEEEeccccccCCc-cceeEEEecCHHHHHHHHHHHh---------------------
Confidence 111111 112348889999988845 7 8999998888766543310
Q ss_pred cccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEE
Q 010538 323 EELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSF 402 (508)
Q Consensus 323 ~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 402 (508)
......+.....++..++. .+..++.+++++.+.++++.+.| ++. .|++ +.++|+
T Consensus 260 ---~~~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~l----------~~~--~p~g--------g~fi~~ 314 (374)
T PRK05839 260 ---YLGCASPLPLQKAAAVAWL--DDEHAEFFRNIYAKNLKLAREIL----------GIT--IPPA--------TFYVWL 314 (374)
T ss_pred ---hcCCCCChHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHhc----------CCC--CCCe--------eEEEEE
Confidence 0011122222333333332 22335566677777776665544 122 2222 788898
Q ss_pred EeeCCCCCccCHHHHHHHH-hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCC
Q 010538 403 NLKRPDGSWFGYREVEKLA-SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGY 481 (508)
Q Consensus 403 ~~~~~~~~~~~~~~l~~~L-~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~ 481 (508)
++++. .++.+.| +++||.+.+|..+.... ..++++|||++.
T Consensus 315 ~~~~~-------~~~~~~l~~~~gi~v~pg~~f~~~~-------------------------------~~~~~iRis~~~ 356 (374)
T PRK05839 315 PVDND-------EEFTKKLYQNEGIKVLPGSFLGRNG-------------------------------IGKGYVRIALVY 356 (374)
T ss_pred eCCCh-------HHHHHHHHHHCCEEEeCchhhCCCC-------------------------------CCCCeEEEEecC
Confidence 88532 2356666 46999999986543211 125899999974
Q ss_pred CCCHHHHHHHHHhhhhhhh
Q 010538 482 MSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 482 ~~t~eev~~l~~~~~~~~~ 500 (508)
+.+++...++.|+++++
T Consensus 357 --~~~~~~~~l~~l~~~l~ 373 (374)
T PRK05839 357 --DTPKLEKALEIIKTYLE 373 (374)
T ss_pred --CHHHHHHHHHHHHHHhh
Confidence 68999999999887764
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-22 Score=204.67 Aligned_cols=282 Identities=13% Similarity=-0.002 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHHHc---CCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEcc
Q 010538 84 DIVRAAREQVLDYF---NASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDV 160 (508)
Q Consensus 84 ~~~~~~r~~la~~~---~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~ 160 (508)
.+.+++.+.+.+.+ |++++ +|++|+|+++++..++..+..++|+.|++++..|+++.... +..|++++.++.
T Consensus 60 ~lr~~ia~~~~~~~~~~~~~~~--~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~---~~~g~~~~~v~~ 134 (357)
T TIGR03539 60 ELREAIVDWLERRRGVPGLDPT--AVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTYEVGA---LLAGATPVAADD 134 (357)
T ss_pred HHHHHHHHHHHHhcCCCCCCcC--eEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcHHHHHHH---HhcCCEEeccCC
Confidence 33444444444443 36677 99999999999999888775588999999998887776554 345888776631
Q ss_pred CCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCC
Q 010538 161 EEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFS 240 (508)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~ 240 (508)
++.+. .+++++|++++++||||.++|.+++.++++ +|+
T Consensus 135 ----------------------~~~l~-----------~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~---------~a~ 172 (357)
T TIGR03539 135 ----------------------PTELD-----------PVGPDLIWLNSPGNPTGRVLSVDELRAIVA---------WAR 172 (357)
T ss_pred ----------------------hhhcC-----------ccCccEEEEeCCCCCcCccCCHHHHHHHHH---------HHH
Confidence 12223 246799999999999999999887666655 455
Q ss_pred CCCeEEEEeccccC-CC--CCCCCC-------CCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEe
Q 010538 241 KGRWMVLIDAAKGC-VT--QPPDLS-------KYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAA 308 (508)
Q Consensus 241 ~~g~~vivD~a~~~-g~--~~~d~~-------~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~ 308 (508)
++|+++|+|+++.. .. .++..- ..+-.+++.|++|.|+ .+| +||++.+++.++.+.....
T Consensus 173 ~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~-~~G~R~G~~i~~~~~~~~~~~~~~------- 244 (357)
T TIGR03539 173 ERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSN-LAGYRAGFVAGDPALVAELLTVRK------- 244 (357)
T ss_pred HcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccC-CCceeEEEEecCHHHHHHHHHHHh-------
Confidence 59999999999852 21 111110 0122488899999987 446 7999988888766543310
Q ss_pred cccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCC
Q 010538 309 SIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYT 388 (508)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~ 388 (508)
.....++.....++..+++. ...++.+++++.+.++++.+.|++. ++.+..+.+
T Consensus 245 -----------------~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~L~~~-------g~~~~~p~~ 298 (357)
T TIGR03539 245 -----------------HAGLMVPAPVQAAMVAALGD--DGHVAEQKARYAARRAQLKPALEKA-------GFRIDHSEA 298 (357)
T ss_pred -----------------hcccCCCHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHHHHHHHc-------CCCCcCCCc
Confidence 01122344444444445532 1235667788888889999999875 455544432
Q ss_pred CCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccC
Q 010538 389 SEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIH 468 (508)
Q Consensus 389 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 468 (508)
+.++++.++. +..++.+.|.++||.+.+|..+...
T Consensus 299 --------~~~~~~~~~~------~~~~~~~~l~~~gV~v~pg~~f~~~------------------------------- 333 (357)
T TIGR03539 299 --------GLYLWATRGE------DAWDTVDRLAELGILVAPGDFYGPA------------------------------- 333 (357)
T ss_pred --------cEEEEEECCC------CHHHHHHHHHhCCEEECCccccCCC-------------------------------
Confidence 5567666542 1234778889999999998643221
Q ss_pred CCCCceEEEecCCCCCHHHHHHHHHhh
Q 010538 469 GKPTGAIRVSFGYMSTFEDAKVNRCSS 495 (508)
Q Consensus 469 ~~~~~~iRis~~~~~t~eev~~l~~~~ 495 (508)
.++++|||++. +.++++..++.|
T Consensus 334 --~~~~iRis~~~--~~~~i~~~~~~l 356 (357)
T TIGR03539 334 --GSQHVRVALTA--TDERIAAAVARL 356 (357)
T ss_pred --CCCeEEEEecC--CHHHHHHHHHhh
Confidence 25789999985 678998888765
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=199.73 Aligned_cols=309 Identities=17% Similarity=0.147 Sum_probs=210.0
Q ss_pred CCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHH
Q 010538 39 NGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALK 117 (508)
Q Consensus 39 ~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~ 117 (508)
.+.++|+++... ++++.+++++.+.+... +...|+. .....+|++++++++++++ +|++|+|+++++.
T Consensus 18 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Y~~-----~g~~~lr~~ia~~~~~~~~--~I~~t~G~~~~l~ 86 (337)
T PRK03967 18 NYRIWLDKNENPFDLPEELKEEIFEELKRV----PFNRYPH-----ITSDPLREAIAEFYGLDAE--NIAVGNGSDELIS 86 (337)
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHhhcC----ccccCCC-----CCHHHHHHHHHHHhCcCcc--eEEEcCCHHHHHH
Confidence 357999998866 45677777765543211 1122221 1257789999999999998 9999999999999
Q ss_pred HHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCC
Q 010538 118 LVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP 197 (508)
Q Consensus 118 ~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~ 197 (508)
+++..+ +|+.|+++...|+. +...++..|++++.++++.+..+ |++.++ +.+
T Consensus 87 ~~~~~~---~gd~V~v~~P~y~~---~~~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~--~~~----- 138 (337)
T PRK03967 87 YLVKLF---EGKHIVITPPTFGM---YSFYAKLNGIPVIDVPLKEDFTI---------------DGERIA--EKA----- 138 (337)
T ss_pred HHHHHh---CCCeEEEeCCChHH---HHHHHHHcCCeEEEeecCCCCCc---------------CHHHHH--Hhc-----
Confidence 988876 48899988866653 33345567999999998754444 577777 432
Q ss_pred CCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC--CCCC-CCCCCCcEEEEecc
Q 010538 198 AGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT--QPPD-LSKYPVDFVVMSFY 274 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~--~~~d-~~~~~~D~~~~S~~ 274 (508)
++++++++++++||||.+++.++|.++++ +++++|+|+++..-. .... +...+--+++.|++
T Consensus 139 --~~~~~v~~~~P~NPtG~~~~~~~l~~i~~-------------~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~l~S~S 203 (337)
T PRK03967 139 --KNASAVFICSPNNPTGNLQPEEEILKVLE-------------TGKPVVLDEAYAEFSGKSLIGLIDEYPNLILLRTFS 203 (337)
T ss_pred --cCCCEEEEeCCCCCCCCCCCHHHHHHHHh-------------cCCEEEEECchhhhcccchHHHHhhCCCEEEEecch
Confidence 46789999999999999999999999986 699999999986311 1111 11112347889999
Q ss_pred ccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChH
Q 010538 275 KIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVP 352 (508)
Q Consensus 275 K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~ 352 (508)
|.|| .+| +||++++++.++.+..... ..+.+.....++..+++... . ..
T Consensus 204 K~~~-l~GlRiG~iv~~~~~i~~~~~~~~--------------------------~~~~~~~~q~~~~~~l~~~~-~-~~ 254 (337)
T PRK03967 204 KAFG-LAGIRAGYAIANEEIIDALYRIKP--------------------------PFSLNILTMKIVRLALDHYD-L-IE 254 (337)
T ss_pred Hhhc-chhhhheeeecCHHHHHHHHhhcC--------------------------CCCCCHHHHHHHHHHHhCHH-H-HH
Confidence 9998 547 8999999888776654311 11233344444444444211 1 33
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCC
Q 010538 353 AICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGC 432 (508)
Q Consensus 353 ~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~ 432 (508)
+..+++.+.++.+.+.|.+. ..+.+ ++++++.++ +.+.|.++||.|+.+.
T Consensus 255 ~~~~~~~~~r~~l~~~L~~~-----------~~~~~--------~~~~~~~~~-----------~~~~l~~~gi~v~~~~ 304 (337)
T PRK03967 255 ERIDYIIKERERVRRELGEY-----------AYPSD--------ANFLLLKLD-----------AYDYLLENGIVVRKLS 304 (337)
T ss_pred HHHHHHHHHHHHHHHHhccC-----------cCCCC--------CcEEEEhHH-----------HHHHHHHCCEEEEeCC
Confidence 44455566667777777542 11222 677777652 4677778899998632
Q ss_pred CCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 433 FCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 433 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
. . ..+++|++++ +.++.++++++|.++.
T Consensus 305 ~---~---------------------------------~~~~~Ri~~~---~~~~~~~l~~~l~~~~ 332 (337)
T PRK03967 305 G---R---------------------------------LEGHIRVTVG---KREENDEFIKALKEIK 332 (337)
T ss_pred C---C---------------------------------CCCeEEEecC---CHHHHHHHHHHHHHHH
Confidence 1 0 1568999999 7888999998887764
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.6e-22 Score=203.24 Aligned_cols=321 Identities=16% Similarity=0.107 Sum_probs=213.9
Q ss_pred CCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc------CCCCCCceEEEcCCh
Q 010538 40 GTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF------NASMKDYKCIFTSGA 112 (508)
Q Consensus 40 ~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~------~~~~~~~~i~~t~g~ 112 (508)
..+.|+.+-... +++.+++++.+.+.... .. ...|+. . ....+|+.+|+++ +++++ +|++|+|+
T Consensus 27 ~~i~l~~~~~~~~~~~~~~~al~~~l~~~~-~~-~~~Y~~-~----g~~~lr~aia~~~~~~~~~~~~~~--~I~it~G~ 97 (368)
T PRK03317 27 VPVRLNTNENPYPPSPALVADIAEAVAEAA-AG-LNRYPD-R----DAVALRADLAAYLTAQTGVGLTVE--NVWAANGS 97 (368)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhhh-hh-hccCCC-C----chHHHHHHHHHHhhhhccCCCChh--hEEECCCH
Confidence 457788776554 45556666544332110 00 011211 1 1355777777777 56777 89999999
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCC
Q 010538 113 TAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASF 192 (508)
Q Consensus 113 t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l 192 (508)
++++.+++.++ .++|+.|++....|+.+. ..++..|.+++.++.+.+..+ |++.++ +++
T Consensus 98 ~~~l~~~~~~~-~~~gd~v~v~~P~y~~~~---~~~~~~g~~~~~~~~~~~~~~---------------d~~~l~--~~~ 156 (368)
T PRK03317 98 NEILQQLLQAF-GGPGRTALGFVPSYSMHP---IIARGTHTEWVEGPRAADFTL---------------DVDAAV--AAI 156 (368)
T ss_pred HHHHHHHHHHh-cCCCCEEEEeCCChHHHH---HHHHhcCCeeEEcccCCCCCC---------------CHHHHH--HHH
Confidence 99999999998 578999998775555444 444557888888877544444 577887 555
Q ss_pred CCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC-CC-CC---C-CCCCC
Q 010538 193 PERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT-QP-PD---L-SKYPV 266 (508)
Q Consensus 193 ~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~-~~-~d---~-~~~~~ 266 (508)
+ .++++++++++++||||.+++.+++.++++. .++++|+|++++.-. .. .. + ...+.
T Consensus 157 ~-----~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~------------~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~ 219 (368)
T PRK03317 157 A-----EHRPDVVFLTSPNNPTGTALPLDDVEAILDA------------APGIVVVDEAYAEFRRSGTPSALTLLPEYPR 219 (368)
T ss_pred h-----ccCCCEEEEeCCCCCCCCCCCHHHHHHHHHH------------CCceEEEeCCchhhcccCCcCHHHHHHhCCC
Confidence 3 2357888999999999999999999999996 589999999987321 11 11 1 11122
Q ss_pred cEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHH
Q 010538 267 DFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFN 344 (508)
Q Consensus 267 D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~ 344 (508)
.+++.|++|.+|.| | +|++++++++++.+..... ....+.....++.++++
T Consensus 220 ~i~~~SfSK~~g~~-GlRiG~~~~~~~~~~~l~~~~~--------------------------~~~~s~~~~~a~~~~l~ 272 (368)
T PRK03317 220 LVVSRTMSKAFAFA-GGRLGYLAAAPAVVDALRLVRL--------------------------PYHLSAVTQAAARAALR 272 (368)
T ss_pred EEEEEechhhhccc-hhhhhhhhCCHHHHHHHHhcCC--------------------------CCCCCHHHHHHHHHHhh
Confidence 37788999999834 7 7999999888776653310 11223344444455555
Q ss_pred HHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEE-EeeCCCCCccCHHHHHHHHhh
Q 010538 345 LINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSF-NLKRPDGSWFGYREVEKLASL 423 (508)
Q Consensus 345 ~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~l~~~L~~ 423 (508)
.... +.+..+++.+.++++.+.|++. ++.+..+. ++++.+ .+. +...+.+.|.+
T Consensus 273 ~~~~--~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~---------~~~~~~~~~~-------~~~~~~~~l~~ 327 (368)
T PRK03317 273 HADE--LLASVAALRAERDRVVAWLREL-------GLRVAPSD---------ANFVLFGRFA-------DRHAVWQGLLD 327 (368)
T ss_pred CHHH--HHHHHHHHHHHHHHHHHHHHHC-------CCEeCCCC---------CcEEEEeccC-------CHHHHHHHHHH
Confidence 3322 3444566777888888888875 56655443 444444 332 12357888889
Q ss_pred CCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 424 SGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 424 ~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
+||.++... .++++|++++ +.+++++++++++++++
T Consensus 328 ~Gv~v~~~~--------------------------------------~~~~iRi~~~---~~~~~~~~~~~l~~~~~ 363 (368)
T PRK03317 328 RGVLIRDVG--------------------------------------IPGWLRVTIG---TPEENDAFLAALAEVLA 363 (368)
T ss_pred CCEEEEeCC--------------------------------------CCCeEEEecC---CHHHHHHHHHHHHHHHH
Confidence 999997521 1578999987 88999999999988764
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=205.42 Aligned_cols=160 Identities=15% Similarity=0.066 Sum_probs=135.4
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEEccC
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDVE 161 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~~ 161 (508)
....+++++.+|++.|++. .++|+|+|+|+++++.++ +++|++||++..+|++....+. .+.+.|++++.++.+
T Consensus 63 ~p~~~~le~~lA~l~g~~~----av~~sSGt~Al~~al~~l-l~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~ 137 (433)
T PRK08134 63 NPTVAVLEERVAALEGGVG----AIATASGQAALHLAIATL-MGAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKPG 137 (433)
T ss_pred ChHHHHHHHHHHHHhCCCc----EEEeCCHHHHHHHHHHHH-hCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECCC
Confidence 4557889999999999864 488999999999999998 7899999999999987666544 356789999999864
Q ss_pred CccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCC
Q 010538 162 EAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK 241 (508)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~ 241 (508)
|+++++ ++| +++|++|++.+++||+|.+.|+++|.++||+
T Consensus 138 --------------------d~~~l~--~~i------~~~TklV~~e~~~np~g~v~Di~~I~~la~~------------ 177 (433)
T PRK08134 138 --------------------DIDGWR--AAI------RPNTRLLFGETLGNPGLEVLDIPTVAAIAHE------------ 177 (433)
T ss_pred --------------------CHHHHH--Hhc------CCCCeEEEEECCCcccCcccCHHHHHHHHHH------------
Confidence 256777 444 5789999999999999999999999999998
Q ss_pred CCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEe
Q 010538 242 GRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMR 289 (508)
Q Consensus 242 ~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~ 289 (508)
+|+++++|++|+.|....++ ++++|+++.|+||+++ |.| +|.+++.
T Consensus 178 ~gi~livD~t~a~~~~~~pl-~~GaD~vv~S~tK~l~-g~g~~~gG~v~~ 225 (433)
T PRK08134 178 AGVPLLVDSTFTTPYLLRPF-EHGADLVYHSATKFLG-GHGTAIGGVLVD 225 (433)
T ss_pred cCCEEEEECCCcccccCCch-hcCCCEEEeccccccC-CCCCceEEEEEe
Confidence 99999999999988876655 6799999999999999 546 6666664
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.5e-22 Score=194.40 Aligned_cols=332 Identities=14% Similarity=0.081 Sum_probs=228.2
Q ss_pred eeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHh
Q 010538 42 VYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGE 121 (508)
Q Consensus 42 iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~ 121 (508)
++|.+...+.++|.+++++.+.-. -+ ...+.......++.+.++++++. + .++|++++|+|+.+++.
T Consensus 2 ~~f~SDn~~g~~~~m~eam~~a~~------~~---~~~YG~D~~~~~~e~~~ae~~g~--~--a~~Fv~sGT~aN~lal~ 68 (342)
T COG2008 2 IDFRSDNVAGPTPEMREALAAANA------VG---DDVYGEDPTTNALEQRIAELFGK--E--AALFVPSGTQANQLALA 68 (342)
T ss_pred CccccCccCCCCHHHHHHHHhccc------cC---CCCCCCCHHHHHHHHHHHHHhCC--c--eEEEecCccHHHHHHHH
Confidence 466677777779999988765310 11 12233456688899999999999 4 69999999999999999
Q ss_pred hcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCC
Q 010538 122 AFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDA 201 (508)
Q Consensus 122 ~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~ 201 (508)
+. .+++..|++....|-.....-......+.....+....++.+ ++++++ ++++..+.+...
T Consensus 69 ~~-~~~~~~vi~~~~aHi~~~E~Ga~~~~~~~~~~~~~~g~~Gkl---------------t~e~v~--~~i~~~d~~~~~ 130 (342)
T COG2008 69 AH-CQPGESVICHETAHIYTDECGAPEFFGGGQKLPIVPGADGKL---------------TPEDVE--AAIRPDDIHHAP 130 (342)
T ss_pred Hh-cCCCCeEEEeccccceecccCcHHHHcCCceeccCCCCCCCc---------------CHHHHH--HhhcCCCcccCC
Confidence 99 599999999999997765532211112333333333346666 689999 877654434445
Q ss_pred ceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC---CCCCCCCCCC--CCcEEEEecccc
Q 010538 202 YNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC---VTQPPDLSKY--PVDFVVMSFYKI 276 (508)
Q Consensus 202 t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~---g~~~~d~~~~--~~D~~~~S~~K~ 276 (508)
+.++++...+|.-|+++|+++|.++.+ +|+++|+.+++||+--+ ....++...+ ++|+++++++|.
T Consensus 131 ~~~~~~e~~~te~GtVy~l~el~~i~~---------~~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~ 201 (342)
T COG2008 131 TPLAVLENTATEGGTVYPLDELEAISA---------VCKEHGLPLHMDGARLANALVALGVALKTIKSYVDSVSFCLTKG 201 (342)
T ss_pred CceEEEeeccCCCceecCHHHHHHHHH---------HHHHhCCceeechHHHHHHHHHcCCCHHHHHhhCCEEEEecccC
Confidence 555555555568899999998888877 67779999999998432 2222444433 799999999998
Q ss_pred ccCCCcceEEEEechhHhhhccccc--cCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHH
Q 010538 277 FGYPTGLGALIMRNDAAKLLKNTYF--SGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAI 354 (508)
Q Consensus 277 ~g~P~G~G~l~~~~~~~~~l~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i 354 (508)
++.|.| .+++++++++++++.... |++ ..-..+.+.. .+-++.+.-....
T Consensus 202 g~~~~g-Aiv~gn~~~~~~a~~~rK~~Ggl--------------------------~~k~r~laA~-~~~~l~~~~~~~~ 253 (342)
T COG2008 202 GGAPVG-AIVFGNRDFAKRARRWRKRAGGL--------------------------MRKARFLAAQ-GLYALEDDVWRLA 253 (342)
T ss_pred Ccceee-eEEEcCHHHHHHHHHHHHHhccc--------------------------HhhhhHHHHH-HHHHHhccHHHHH
Confidence 886754 888889998877653322 221 1111122222 2233333335666
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCC
Q 010538 355 CRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFC 434 (508)
Q Consensus 355 ~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~ 434 (508)
..|..+++++|.+.+.+. +|+++..|+. .++|.+++++. ....|...|+....|..
T Consensus 254 ~~Han~mA~~La~~~~~~------~G~~~~~~~~--------tN~vf~~l~~~---------~i~~l~~~~~~~~~~~~- 309 (342)
T COG2008 254 ADHANAMAARLAEGLEAK------PGVKLAFPVE--------TNMVFVRLPES---------AIEALRLAGALFYRGVL- 309 (342)
T ss_pred HHHHHHHHHHHHHhhhhc------CCceeccCCc--------ccEEEEECChH---------HHHHHHhhchhheeeee-
Confidence 777788899999999876 4899998854 79999998763 33566666666443320
Q ss_pred CchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCC-ceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 435 NPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPT-GAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 435 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
.. .. ..+|+..|+.+|++||+.+++.++.+.
T Consensus 310 ~~----------------------------------~~~~~vRfvts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 310 IG----------------------------------AHGEIVRFVTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred cc----------------------------------CCCceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence 00 02 379999999999999999999988764
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-22 Score=207.42 Aligned_cols=298 Identities=19% Similarity=0.170 Sum_probs=207.5
Q ss_pred HHHHHHHHHHHHcC------CCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEE
Q 010538 85 IVRAAREQVLDYFN------ASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAI 158 (508)
Q Consensus 85 ~~~~~r~~la~~~~------~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v 158 (508)
..+.+|+.+|++++ .+++. .|++++|+.+++..+...+...+|+.|+++...|+.+... ++..|.+++.+
T Consensus 45 g~~~lr~~ia~~~~~~~~~~~~~~~-~i~~~~G~~~~~~~~~~~~~~~~~~~vlv~~P~y~~~~~~---~~~~g~~~~~~ 120 (363)
T PF00155_consen 45 GYPELREAIADFLGRRYGVPVDPEA-NILVTSGAQAALFLLLRLLKINPGDTVLVPDPCYPSYIEA---ARLLGAEVIPV 120 (363)
T ss_dssp HHHHHHHHHHHHHHHHHTHHTTGGE-GEEEESHHHHHHHHHHHHHHSSTTSEEEEEESSSTHHHHH---HHHTTSEEEEE
T ss_pred hhHHHHHHHHHHhhhccCcccccce-EEEEecccccchhhhhhcccccccccceecCCcccccccc---ccccCceeeec
Confidence 46778899999988 44431 5999999999998888887446789999998777766554 44569999999
Q ss_pred ccCC--ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCcccccc
Q 010538 159 DVEE--AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEI 236 (508)
Q Consensus 159 ~~~~--~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~ 236 (508)
|++. +..+ |++.++ +.+++....+.++++|+++.++||||..+|.+++.++++
T Consensus 121 ~~~~~~~~~~---------------d~~~l~--~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~-------- 175 (363)
T PF00155_consen 121 PLDSENDFHL---------------DPEALE--EALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAE-------- 175 (363)
T ss_dssp EEEETTTTEE---------------THHHHH--HHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHH--------
T ss_pred cccccccccc---------------cccccc--cccccccccccccceeeecccccccccccccccccchhh--------
Confidence 9652 2333 567776 544321111125789999999999999999999999955
Q ss_pred CCCCCCCeEEEEeccccCCCCC-CC------CCCCCC-cEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceE
Q 010538 237 SPFSKGRWMVLIDAAKGCVTQP-PD------LSKYPV-DFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTV 306 (508)
Q Consensus 237 ~~~~~~g~~vivD~a~~~g~~~-~d------~~~~~~-D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~ 306 (508)
+|+++|+++++|++++..... .+ .-..+. .+++.|++|.|| ..| +|++++++++++.+......+
T Consensus 176 -~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g-~~GlRvG~i~~~~~~~~~l~~~~~~~--- 250 (363)
T PF00155_consen 176 -LAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFG-LPGLRVGYIVAPPELIERLRRFQRSG--- 250 (363)
T ss_dssp -HHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTT-SGGGTEEEEEEEHHHHHHHHHHHHHT---
T ss_pred -hhcccccceeeeeceeccccCCCccCcccccccccccceeeeecccccc-ccccccccccchhhhhhhhhhccccc---
Confidence 445599999999999864333 11 111123 488999999998 447 899999888877665442111
Q ss_pred EecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEe
Q 010538 307 AASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSL--TVPAICRHIASLGMYVRKVLLSLRHENGADVCTIY 384 (508)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~--g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~ 384 (508)
..+......+...+...... .++++.+++++.++++.+.|++. ++.+.
T Consensus 251 -----------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-------~~~~~ 300 (363)
T PF00155_consen 251 -----------------------LSSSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEI-------GITVL 300 (363)
T ss_dssp -----------------------TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TSEEE
T ss_pred -----------------------cccchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHh-------hhhee
Confidence 11333333333333322211 36888999999999999999887 68888
Q ss_pred cCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhC-CCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCC
Q 010538 385 GTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLS-GIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDD 463 (508)
Q Consensus 385 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~-gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 463 (508)
.++. +.+++..++.. +..++.+.|.++ ||.+.+|..+..
T Consensus 301 ~~~~--------~~~~~~~~~~~-----~~~~l~~~L~~~~gi~v~pg~~~~~--------------------------- 340 (363)
T PF00155_consen 301 PPEA--------GFFLWVRLDPN-----DAEELAQELLEEYGILVRPGSYFGV--------------------------- 340 (363)
T ss_dssp HHSB--------SSEEEEEESHH-----HHHHHHHHHHHHHTEEEEEGGGGTS---------------------------
T ss_pred eccC--------ccEEEEEcccc-----hHHHHHHHHHHhCCEEEEecCCCCC---------------------------
Confidence 7664 56776666543 223477777776 999999864322
Q ss_pred ccccCCCCCceEEEecCCCCCHHHHHHHHHhh
Q 010538 464 NDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSS 495 (508)
Q Consensus 464 ~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~ 495 (508)
++++|+++ ...+.++++++++.|
T Consensus 341 --------~~~iRi~~-a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 341 --------PGYIRISL-ASHSEEDLEEALERL 363 (363)
T ss_dssp --------TTEEEEEG-GCSCHHHHHHHHHHH
T ss_pred --------CCEEEEEe-ccCCHHHHHHHHhhC
Confidence 57899999 667999999998875
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=206.67 Aligned_cols=309 Identities=11% Similarity=0.009 Sum_probs=200.0
Q ss_pred HHHHHHHHHHHc----C--CCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEc
Q 010538 86 VRAAREQVLDYF----N--ASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAID 159 (508)
Q Consensus 86 ~~~~r~~la~~~----~--~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~ 159 (508)
...+|+.+++++ | ++++ +|++|+|+++|+.+++. + ..+|+.|++....|+.+.... ....|++++.+|
T Consensus 75 ~~~LReaia~~~~~~~g~~~~~~--~I~it~G~~~al~~~~~-l-~~~Gd~Vlv~~P~Y~~~~~~~--~~~~g~~~v~v~ 148 (433)
T PRK06855 75 VLETREFLAELNNKRGGAQITPD--DIIFFNGLGDAIAKIYG-L-LRREARVIGPSPAYSTHSSAE--AAHAGYPPVTYR 148 (433)
T ss_pred CHHHHHHHHHHHHhccCCCCCHh--HEEEcCcHHHHHHHHHH-h-cCCCCeEEEeCCCCchHHHHH--HHhcCCeEEEEe
Confidence 344555565554 4 5677 89999999999999885 5 578999999988887643221 123478888888
Q ss_pred cCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCC
Q 010538 160 VEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPF 239 (508)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~ 239 (508)
++.+... .+|+++++ +++.+ .++++++++++++||||.+++.+++.++++ +|
T Consensus 149 ~~~~~~~-------------~~d~~~l~--~~~~~----~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~---------~a 200 (433)
T PRK06855 149 LDPENNW-------------YPDLDDLE--NKVKY----NPSIAGILLINPDNPTGAVYPKEILREIVD---------IA 200 (433)
T ss_pred cccccCC-------------CCCHHHHH--HHHhc----CCCceEEEEECCCCCCCcCCCHHHHHHHHH---------HH
Confidence 7642221 12678888 55531 246789999999999999999998888876 56
Q ss_pred CCCCeEEEEeccccC----CCCCCCCCCC---CCcEEEEeccccccCCCc--ceEEEEec----h-hHhhhccccccCce
Q 010538 240 SKGRWMVLIDAAKGC----VTQPPDLSKY---PVDFVVMSFYKIFGYPTG--LGALIMRN----D-AAKLLKNTYFSGGT 305 (508)
Q Consensus 240 ~~~g~~vivD~a~~~----g~~~~d~~~~---~~D~~~~S~~K~~g~P~G--~G~l~~~~----~-~~~~l~~~~~g~~~ 305 (508)
+++|++||+|++++. +..+.++... +..+++.|++|.|+.| | +||+++++ . +.+.+.....
T Consensus 201 ~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~p-GlRiG~ii~p~~~~~~~~~~~~~~~~~---- 275 (433)
T PRK06855 201 REYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWP-GSRCGWIEVYNADKDEVFKKYINSILN---- 275 (433)
T ss_pred HHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccccCCC-cceEEEEEEeCCchhhHHHHHHHHHHH----
Confidence 679999999999863 2122232211 1248899999999834 7 89999842 1 1111111100
Q ss_pred EEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEe
Q 010538 306 VAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN-SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIY 384 (508)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~-~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~ 384 (508)
......+ ++.....++..+++.-. +..+++.++++++.++.+.+.|+++ +++.+.
T Consensus 276 -----------------~~~~~~~-~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~------~~~~~~ 331 (433)
T PRK06855 276 -----------------AKMIEVC-STTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKDV------PGLKVN 331 (433)
T ss_pred -----------------hhccccC-CChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcC------CCeecc
Confidence 0001112 23333344443432100 1125677788888899999999876 356655
Q ss_pred cCCCCCcccCCCCceEEEEeeCCCC-----Cc-------------------cCHHHHHHHHhhCCCeeccCCCCCchHHH
Q 010538 385 GTYTSEVSYHDTGSMVSFNLKRPDG-----SW-------------------FGYREVEKLASLSGIQLRTGCFCNPGACA 440 (508)
Q Consensus 385 ~~~~~~~~~~~~~~~v~~~~~~~~~-----~~-------------------~~~~~l~~~L~~~gI~v~~g~~~~~~~~~ 440 (508)
.|.+ +.++|+++++.-. .. -+...+..++.++||.+.+|..|...
T Consensus 332 ~p~g--------g~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~--- 400 (433)
T PRK06855 332 RTNG--------AFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTE--- 400 (433)
T ss_pred CCCe--------eEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCC---
Confidence 4543 6889998875210 00 01122445678899999999866321
Q ss_pred hhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 441 KYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 441 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
...+|||+.. .+.++++..++.|+++++
T Consensus 401 -------------------------------~~~~Rls~~~-~~~~~i~~~~~~l~~~~~ 428 (433)
T PRK06855 401 -------------------------------LNGFRVTLLE-RDEEKFEWIYQTLAEKIE 428 (433)
T ss_pred -------------------------------CCceEEEECC-CcHHHHHHHHHHHHHHHH
Confidence 2349999987 468999999999988775
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-21 Score=199.78 Aligned_cols=279 Identities=13% Similarity=0.021 Sum_probs=188.9
Q ss_pred HHHHHHHHHc----C---CCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEcc
Q 010538 88 AAREQVLDYF----N---ASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDV 160 (508)
Q Consensus 88 ~~r~~la~~~----~---~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~ 160 (508)
++|+.+++++ | ++++ +|++|+|+++++.++...+...+|+.|+++...|+++....+ ..|+++..++.
T Consensus 66 ~lr~~ia~~l~~~~~~~~~~~~--~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~---~~g~~~~~~~~ 140 (364)
T PRK07865 66 ELREAIVGWLARRRGVTGLDPA--AVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTYEVGAR---LAGATVVRADS 140 (364)
T ss_pred HHHHHHHHHHHHHcCCCCCCcc--cEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcccHHHHHH---hcCCEEEecCC
Confidence 3445555554 4 5577 899999999999998877745789999999888877755443 45888877641
Q ss_pred CCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCC
Q 010538 161 EEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFS 240 (508)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~ 240 (508)
.+++. .+++++|++++++||||.+++.+++.++++ +|+
T Consensus 141 ----------------------~~~l~-----------~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~---------~a~ 178 (364)
T PRK07865 141 ----------------------LTELG-----------PQRPALIWLNSPSNPTGRVLGVDHLRKVVA---------WAR 178 (364)
T ss_pred ----------------------hhhCC-----------cccceEEEEcCCCCCCCccCCHHHHHHHHH---------HHH
Confidence 12223 246799999999999999999887776665 455
Q ss_pred CCCeEEEEeccccCCC---CCCCC-C------CCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEe
Q 010538 241 KGRWMVLIDAAKGCVT---QPPDL-S------KYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAA 308 (508)
Q Consensus 241 ~~g~~vivD~a~~~g~---~~~d~-~------~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~ 308 (508)
++|+++|+|++++.-. .++.. . ..+..+++.|++|.|+.| | +||++.++++++.+......
T Consensus 179 ~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~-GlRiG~i~~~~~~~~~~~~~~~~------ 251 (364)
T PRK07865 179 ERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLA-GYRAGFVAGDPALVAELLEVRKH------ 251 (364)
T ss_pred HcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccCCC-ceeeEEEecCHHHHHHHHHHHHh------
Confidence 5999999999987311 11111 0 112348999999999734 6 89999988887665533100
Q ss_pred cccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCC
Q 010538 309 SIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYT 388 (508)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~ 388 (508)
...+.+.....++..+++. ....+..++++.+.++.+.+.|++. ++.+..+.+
T Consensus 252 ------------------~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~ 304 (364)
T PRK07865 252 ------------------AGMMVPAPVQAAMVAALGD--DAHVREQRERYARRRAVLRPALEAA-------GFRVDHSEA 304 (364)
T ss_pred ------------------cCCCcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHc-------CCcccCCCc
Confidence 0112233333344444432 1225667788888899999999875 566554432
Q ss_pred CCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccC
Q 010538 389 SEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIH 468 (508)
Q Consensus 389 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 468 (508)
+.++++.++. +...+.+.|.++||.+.+|..+...
T Consensus 305 --------~~~~~~~~~~------~~~~~~~~l~~~gv~v~pg~~f~~~------------------------------- 339 (364)
T PRK07865 305 --------GLYLWATRGE------DCWDTVAWLAERGILVAPGDFYGPA------------------------------- 339 (364)
T ss_pred --------cEEEEEeCCC------CHHHHHHHHHHCCEEEeCccccCcC-------------------------------
Confidence 4567776532 1234778888999999998644221
Q ss_pred CCCCceEEEecCCCCCHHHHHHHHHhhh
Q 010538 469 GKPTGAIRVSFGYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 469 ~~~~~~iRis~~~~~t~eev~~l~~~~~ 496 (508)
.++++||+++. +.+++++.++.|+
T Consensus 340 --~~~~iRi~~~~--~~~~~~~~~~~l~ 363 (364)
T PRK07865 340 --GAQHVRVALTA--TDERIAAAVERLA 363 (364)
T ss_pred --CCCEEEEEecC--CHHHHHHHHHHhh
Confidence 25789999985 6899999988764
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-22 Score=210.85 Aligned_cols=310 Identities=12% Similarity=0.097 Sum_probs=204.8
Q ss_pred HHHHHHHHHHHcC--------CCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEE
Q 010538 86 VRAAREQVLDYFN--------ASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFA 157 (508)
Q Consensus 86 ~~~~r~~la~~~~--------~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~ 157 (508)
...+|+++|++++ ++++ +|++|+|+++|+.+++.++ ..+|+.|+++...|+.+...+. .+.|++++.
T Consensus 97 ~~~LR~aiA~~l~~~~~~~~~v~p~--~Ivit~G~t~al~~l~~~l-~~pGD~Vlv~~P~Y~~f~~~~~--~~~g~~vv~ 171 (447)
T PLN02607 97 LKSFRQAMASFMEQIRGGKARFDPD--RIVLTAGATAANELLTFIL-ADPGDALLVPTPYYPGFDRDLR--WRTGVKIVP 171 (447)
T ss_pred hHHHHHHHHHHHHHhcCCCCCcCHH--HeEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCCcchHHHHH--hcCCcEEEE
Confidence 4556666666654 5677 8999999999999999998 6889999999988887765433 136899999
Q ss_pred EccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccC
Q 010538 158 IDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEIS 237 (508)
Q Consensus 158 v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~ 237 (508)
|+.+....+ ..++++++ +++.+....+.+++++++++++||||.++|.+.+.++++
T Consensus 172 v~~~~~~~f-------------~~~~~~le--~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~--------- 227 (447)
T PLN02607 172 IHCDSSNNF-------------QVTPQALE--AAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILD--------- 227 (447)
T ss_pred EeCCCCCCC-------------cCCHHHHH--HHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHH---------
Confidence 988643222 11577777 555321122457899999999999999999887777776
Q ss_pred CCCCCCeEEEEeccccCCC---C-CCCCC----C------CCCcEEEEeccccccCCCc--ceEEEEe-chhHhhhcccc
Q 010538 238 PFSKGRWMVLIDAAKGCVT---Q-PPDLS----K------YPVDFVVMSFYKIFGYPTG--LGALIMR-NDAAKLLKNTY 300 (508)
Q Consensus 238 ~~~~~g~~vivD~a~~~g~---~-~~d~~----~------~~~D~~~~S~~K~~g~P~G--~G~l~~~-~~~~~~l~~~~ 300 (508)
+|+++++++|+|++++.-. . ..++. . .+.-.++.|++|.||.| | +|+++.. ++++..++...
T Consensus 228 ~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~-GlRvG~ivs~n~~l~~~~~~~~ 306 (447)
T PLN02607 228 FVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLP-GFRVGTIYSYNDKVVTTARRMS 306 (447)
T ss_pred HHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCC-cceEEEEEEcCHHHHHHHHHHh
Confidence 5666999999999987421 1 11111 0 11236778999999844 7 8999984 44443332210
Q ss_pred ccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHH---HHHhcChHHHHHHHHHHHHHHHHHHhcccCCCC
Q 010538 301 FSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFN---LINSLTVPAICRHIASLGMYVRKVLLSLRHENG 377 (508)
Q Consensus 301 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~---~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~ 377 (508)
..+..+......+...++ +.++ .+...++++.+..+.+.+.|++.
T Consensus 307 --------------------------~~~~~s~~~q~~~~~~L~d~~~~~~-~l~~~r~~l~~~~~~~~~~L~~~----- 354 (447)
T PLN02607 307 --------------------------SFTLVSSQTQHLLASMLSDEEFTEN-YIRTNRERLRKRYEMIVQGLRRA----- 354 (447)
T ss_pred --------------------------hcCCCCHHHHHHHHHHhCCchhHHH-HHHHHHHHHHHHHHHHHHHHHhC-----
Confidence 001112222222332322 1111 24566777888888888899875
Q ss_pred CceEEEecCCCCCcccCCCCceEEEEeeCCC--CCccCHHHHH-HHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhh
Q 010538 378 ADVCTIYGTYTSEVSYHDTGSMVSFNLKRPD--GSWFGYREVE-KLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNI 454 (508)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~l~-~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~ 454 (508)
++.+..+.+ +.++|++++..- ...-...++. +.++++||.+.+|..|...
T Consensus 355 --gi~~~~~~a--------g~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~----------------- 407 (447)
T PLN02607 355 --GIECLKGNA--------GLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHCS----------------- 407 (447)
T ss_pred --CCCcccCCe--------eEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccCCC-----------------
Confidence 566554433 789999986421 1100112355 4456689999999866432
Q ss_pred hcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 455 EAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
.+|++||+++. .++++++..+++|.++++-
T Consensus 408 ----------------~~g~fRi~fa~-~~~~~l~~gl~Ri~~~l~~ 437 (447)
T PLN02607 408 ----------------EPGWFRVCFAN-MSEDTLEVALKRIHRFMDR 437 (447)
T ss_pred ----------------CCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Confidence 27899999995 3588899999998887753
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-20 Score=213.06 Aligned_cols=357 Identities=11% Similarity=0.037 Sum_probs=228.5
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCC--CCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChH-HH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGN--PHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGAT-AA 115 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t-~a 115 (508)
...|.|.+ .+....|.+...... . ..|.+ |......+....+++.++.+++++++|.+. +.+.++++ +|
T Consensus 499 ~~~i~lGs-ct~~~~p~~~~~~~~-~--~~f~~~hP~qp~e~~qG~l~~i~e~q~~l~eltG~d~----~sl~~~~ga~g 570 (954)
T PRK05367 499 RSMIPLGS-CTMKLNAAAEMIPIT-W--PEFANLHPFAPAEQAAGYRELIDQLEAWLAEITGYDA----VSLQPNAGAQG 570 (954)
T ss_pred cceeeCCc-CCCcCCHHHHHHHHh-C--ccccccCCCChHHHHHHHHHHHHHHHHHHHHHHCCCC----EEECccHHHHH
Confidence 44677887 455556655544332 1 11221 222212234467888899999999999873 45655444 44
Q ss_pred H---HHHHhhcCCCCCC----eEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhc
Q 010538 116 L---KLVGEAFPWSHQS----SYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRK 188 (508)
Q Consensus 116 l---~~~~~~l~~~~g~----~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~ 188 (508)
. .++++.+...+|+ +|+++...|++....+. ..|++++.||.+.++.+ |+++++
T Consensus 571 e~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~---~~G~~vv~v~~d~~G~i---------------D~~~L~- 631 (954)
T PRK05367 571 EYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAV---MAGMKVVVVACDENGNI---------------DLDDLR- 631 (954)
T ss_pred HHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHH---HCCCEEEEECCCCCCCc---------------CHHHHH-
Confidence 3 2345544344444 69999999988766544 45999999999877777 688888
Q ss_pred CCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCC-CCCCCCc
Q 010538 189 GASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPD-LSKYPVD 267 (508)
Q Consensus 189 ~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d-~~~~~~D 267 (508)
+.++++ .+++.+|+++++++..+...|+++|+++||+ +|++++||+++..+...+. ..++++|
T Consensus 632 -~~i~~~---~~~la~V~it~pst~G~~e~~I~eI~~i~h~------------~G~~v~VDgA~~~al~~l~~pg~~GAD 695 (954)
T PRK05367 632 -AKAEEH---ADNLAAIMITYPSTHGVFEETIREICEIVHE------------HGGQVYLDGANMNAQVGLARPGDIGAD 695 (954)
T ss_pred -HHHhcc---CCCeEEEEEEcCCCCeeecCCHHHHHHHHHH------------cCCEEEEECcChhhccCCCChhhcCCC
Confidence 666431 3467888889887764445899999999998 8999999999986655444 3467999
Q ss_pred EEEEeccccccCCCc-----ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChh---HHHHH
Q 010538 268 FVVMSFYKIFGYPTG-----LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFL---SIASI 339 (508)
Q Consensus 268 ~~~~S~~K~~g~P~G-----~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~---~~~~l 339 (508)
++++|+||||+.|.| +|++++++. +.|.+.|+.... ... . ...|+.... +...+
T Consensus 696 i~~~s~HK~f~~P~G~GGPg~G~l~vr~~----l~p~lpg~~v~~-~~~-----------~--~~~g~v~ta~~g~al~~ 757 (954)
T PRK05367 696 VSHLNLHKTFCIPHGGGGPGVGPIGVKAH----LAPFLPGHPVQI-AGG-----------E--TGIGAVSAAPFGSASIL 757 (954)
T ss_pred EEEecCcccCCCCcCCCCCceEEEeeccc----ccccCCCCccCc-CCC-----------C--CCcCcchhHHHHHHHHH
Confidence 999999999865554 779999854 455555542100 000 0 001222211 11222
Q ss_pred ---HHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEE-eeCCCCCccCHH
Q 010538 340 ---RHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFN-LKRPDGSWFGYR 415 (508)
Q Consensus 340 ---~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~ 415 (508)
+..+.++...|+.++.++...+++|+.+.|++.. .+...++.... -+..++.++ ++.. ..+...
T Consensus 758 ~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~~------~~~~~~~~~~~----~~e~i~~~~~~~~~--~g~~~~ 825 (954)
T PRK05367 758 PISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDHY------PVLYTGANGRV----AHECILDLRPLKES--TGITVD 825 (954)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhc------CccccCCCCCc----ccceEEEeeccccc--CCCCHH
Confidence 2233444444566666667799999999997752 23333332211 123343332 2211 113456
Q ss_pred HHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhh
Q 010538 416 EVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSS 495 (508)
Q Consensus 416 ~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~ 495 (508)
++.+.|.+.|+....-. + + ..+.+||+++.++|.+|+|+++++|
T Consensus 826 di~krL~d~G~~~~t~~-~-p----------------------------------v~~~l~i~ptE~~s~~elDr~~~al 869 (954)
T PRK05367 826 DIAKRLIDYGFHAPTMS-F-P----------------------------------VAGTLMVEPTESESKAELDRFCDAM 869 (954)
T ss_pred HHHHHHHHCCCeEeecC-C-c----------------------------------cCCEEEEEeeecCCHHHHHHHHHHH
Confidence 79999999999976521 1 1 1578999999999999999999999
Q ss_pred hhhhhhhhh
Q 010538 496 FDFVNFSQF 504 (508)
Q Consensus 496 ~~~~~~~~~ 504 (508)
+.+.+.++.
T Consensus 870 ~~i~~e~~~ 878 (954)
T PRK05367 870 IAIRAEIDE 878 (954)
T ss_pred HHHHHHHHH
Confidence 998877654
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=202.80 Aligned_cols=315 Identities=12% Similarity=0.053 Sum_probs=211.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHH-HHHHHHhcCCeEEEEccCC
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLG-IREYALSQGAAAFAIDVEE 162 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~-~~~~~~~~G~~v~~v~~~~ 162 (508)
...+++++.+|+++|++.. +++ ++++.|+.+++.++ .++|++|+++...|++... +...+...|+++..++.+
T Consensus 63 p~~~~le~~lA~l~g~~~a---v~~-~sG~~Ai~~al~al-~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~- 136 (389)
T PRK05968 63 PTVRAFEEMLAKLEGAEDA---RGF-ASGMAAISSTVLSF-VEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGR- 136 (389)
T ss_pred hhHHHHHHHHHHHhCCCcE---EEE-CCHHHHHHHHHHHH-hCCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCCC-
Confidence 4478899999999999744 565 55567998888887 6889999999888876554 344667789999988753
Q ss_pred ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC
Q 010538 163 AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG 242 (508)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~ 242 (508)
|+++++ +++ ++|++|++++++|+++.+.|+++|.++|++ +
T Consensus 137 -------------------d~~~l~--~~i-------~~tklV~ie~pt~~~~~~~dl~~i~~la~~------------~ 176 (389)
T PRK05968 137 -------------------DEEAVA--KAL-------PGAKLLYLESPTSWVFELQDVAALAALAKR------------H 176 (389)
T ss_pred -------------------CHHHHH--Hhc-------ccCCEEEEECCCCCCCcHHHHHHHHHHHHH------------c
Confidence 356677 433 467999999999999999999999999997 8
Q ss_pred CeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhcc
Q 010538 243 RWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQ 320 (508)
Q Consensus 243 g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~ 320 (508)
|+++++|++++.+.....+ ..++|+++.|++|++++|.+ .|+++.+++++++++.....
T Consensus 177 gi~vivD~a~a~~~~~~p~-~~g~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~------------------ 237 (389)
T PRK05968 177 GVVTMIDNSWASPVFQRPI-TLGVDLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYP------------------ 237 (389)
T ss_pred CCEEEEECCCcchhccCch-hcCCcEEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHH------------------
Confidence 9999999999876432222 35789999999999987755 58888788777665532110
Q ss_pred CccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcc----cCCC
Q 010538 321 GVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVS----YHDT 396 (508)
Q Consensus 321 ~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~----~~~~ 396 (508)
...+..+....+.+..+++ .+..+.++..+.++++.+.|++.+ +++.+..+..... ....
T Consensus 238 -----~~g~~~~~~~A~~~l~~L~-----tl~~r~~~~~~~a~~la~~L~~~p------~v~~v~~p~l~~~~~~~~~g~ 301 (389)
T PRK05968 238 -----YLGAKLSPFEAWLLLRGLR-----TLPLRMKAHEASALEIARRLKAHP------VVERVCHPALANHPPAGLSGT 301 (389)
T ss_pred -----hCCCCCChHHHHHHHcccC-----cHHHHHHHHHHHHHHHHHHHHhCC------CccEEECCCCCCChHHhCCCC
Confidence 0011222222222222322 346666777788999999998874 5654442211000 0012
Q ss_pred CceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchH--HHhhcCCChhhhhhhhhcCCccCCCccccCCCCCce
Q 010538 397 GSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGA--CAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGA 474 (508)
Q Consensus 397 ~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (508)
+++++|.+++. .+..++...|+..++.++.|..|+.-. ..-.-.+.+....+.+| ..++.
T Consensus 302 g~~~sf~~~~~----~~~~~f~~~L~~~~~~~s~G~~~slv~p~~~~~~~~~~~~~~~~~g--------------i~~~l 363 (389)
T PRK05968 302 SGLFSFIFREG----IDVRAFADALKLFRLGVSWGGHESLVVPAEVVLQQKAQPNSAARFG--------------VSPRS 363 (389)
T ss_pred ceEEEEEECCH----HHHHHHHHhCCccEEecCCCCCCceeeeCcccccccCCHHHHHhcC--------------CCCCe
Confidence 67999999742 234568888888899999998877210 00000000011111222 23789
Q ss_pred EEEecCCCCCHHHHHHHHHhhhh
Q 010538 475 IRVSFGYMSTFEDAKVNRCSSFD 497 (508)
Q Consensus 475 iRis~~~~~t~eev~~l~~~~~~ 497 (508)
||+|+++.++++=++.+-++|..
T Consensus 364 iR~SvGlE~~~dl~~dl~~al~~ 386 (389)
T PRK05968 364 VRLHVGLEGTEALWADLEQALAA 386 (389)
T ss_pred EEEEeccCCHHHHHHHHHHHHHH
Confidence 99999999988888877777653
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-21 Score=199.36 Aligned_cols=322 Identities=14% Similarity=0.080 Sum_probs=224.8
Q ss_pred CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcC--------
Q 010538 53 SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFP-------- 124 (508)
Q Consensus 53 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~-------- 124 (508)
+|.++++..+.... |+........-.......+++++.+|+++|.+.. ++|.+|.. |+..++.++.
T Consensus 118 ~p~v~~a~~~ai~~--yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g~e~a---ll~sSGy~-AN~~~i~aL~~~~~~~~~ 191 (476)
T PLN02955 118 HPTISNAAANAAKE--YGMGPKGSALICGYTTYHRLLESSLADLKKKEDC---LVCPTGFA-ANMAAMVAIGSVASLLAA 191 (476)
T ss_pred CHHHHHHHHHHHHH--cCCCCCCcCccccChHHHHHHHHHHHHHHCCCcE---EEECChHH-HHHHHHHHHhhccccccc
Confidence 67777777665432 3322112222223456788999999999999865 56555554 6666666551
Q ss_pred -----CCCCCeEEEecccccchHHHHHHHHhc-CCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCC
Q 010538 125 -----WSHQSSYMYTMENHNSVLGIREYALSQ-GAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPA 198 (508)
Q Consensus 125 -----~~~g~~vl~~~~~h~s~~~~~~~~~~~-G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~ 198 (508)
...++.|++....|.|+....++.+.. ++++..++.++ ++.++ +.|++ .
T Consensus 192 ~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~HND--------------------~~~Le--~~L~~---~ 246 (476)
T PLN02955 192 SGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRHCD--------------------MYHLN--SLLSS---C 246 (476)
T ss_pred cccccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCCCC--------------------HHHHH--HHHHh---C
Confidence 234568899999999999888876554 47777777542 44445 44422 1
Q ss_pred CCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCC---------CCCCCCCcEE
Q 010538 199 GDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPP---------DLSKYPVDFV 269 (508)
Q Consensus 199 ~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~---------d~~~~~~D~~ 269 (508)
.++.++|++..+.++.|.+.|+++|.+++++ +|+++++|++|+.|..-. .+. .++|++
T Consensus 247 ~~~~~~Vv~EgV~SmdGdiapL~eL~~L~~~------------~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~-~di~ii 313 (476)
T PLN02955 247 KMKRKVVVTDSLFSMDGDFAPMEELSQLRKK------------YGFLLVIDDAHGTFVCGENGGGVAEEFNCE-ADVDLC 313 (476)
T ss_pred CCCceEEEEeCCCCCCCCcCCHHHHHHHHHH------------cCcEEEEcccccCceecCCCCcHHHHhCCC-CCCcEE
Confidence 2345789999999999999999999999997 899999999999765433 222 368999
Q ss_pred EEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCcccccc-CCCCChhHHHHHHHHHHHHHh
Q 010538 270 VMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFE-DGTASFLSIASIRHGFNLINS 348 (508)
Q Consensus 270 ~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~gt~~~~~~~~l~~al~~~~~ 348 (508)
++|+.|.+| -.| |++..+++.++.++.. .+.+. ++..+++..++..++++.+.+
T Consensus 314 ~~TLsKA~G-~~G-Gfi~gs~~~~~~l~~~-----------------------~~~~ifStalpp~~aaa~laal~l~~~ 368 (476)
T PLN02955 314 VGTLSKAAG-CHG-GFIACSKKWKQLIQSR-----------------------GRSFIFSTAIPVPMAAAAYAAVVVARK 368 (476)
T ss_pred EEeCccchh-ccC-ceeecHHHHHHHHHHh-----------------------CCCCeecccccHHHHHHHHHHHHHHhc
Confidence 999999999 445 8888888777665532 11111 223445556666778887754
Q ss_pred cChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCee
Q 010538 349 LTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQL 428 (508)
Q Consensus 349 ~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v 428 (508)
. ...++++.++.+++++.+ |+.+ . ++|+.+.+.+... ...+.+.|.++||.+
T Consensus 369 ~--~~~r~~L~~n~~~fr~~~----------G~~~----~--------sPI~pI~ig~~~~----a~~~~~~L~~~Gi~v 420 (476)
T PLN02955 369 E--KWRRKAIWERVKEFKALS----------GVDI----S--------SPIISLVVGNQEK----ALKASRYLLKSGFHV 420 (476)
T ss_pred C--HHHHHHHHHHHHHHHHhc----------CCCC----C--------CCEEEEEeCCHHH----HHHHHHHHHHCCCEE
Confidence 3 457788888888888732 2321 1 6888888865322 234789999999999
Q ss_pred ccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhh
Q 010538 429 RTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 429 ~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~ 503 (508)
.+...++.|. ....+||+++..+|.+||+++++.|.+..+.++
T Consensus 421 ~~i~yPtVP~--------------------------------g~~rLRi~lsA~Ht~edId~lv~~L~~~~~~~~ 463 (476)
T PLN02955 421 MAIRPPTVPP--------------------------------NSCRLRVTLSAAHTTEDVKKLITALSSCLDFDN 463 (476)
T ss_pred EEECCCCCCC--------------------------------CCceEEEeeCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 9877666553 246799999999999999999999988766543
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.9e-21 Score=205.70 Aligned_cols=364 Identities=12% Similarity=0.062 Sum_probs=223.2
Q ss_pred hHHHHHHhhccCC-CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc----C--
Q 010538 26 IDQIRATEFKRLE-NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF----N-- 98 (508)
Q Consensus 26 ~~~~r~~~f~~~~-~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~-- 98 (508)
...+|+ -..... ++.+-|.. +....|..+++++.+ .+....+.....|.. ......+|+.+|+++ |
T Consensus 116 ~~~~r~-v~~~~~~p~~i~~~~-~~~~fp~~~i~~a~~-~l~~~~~~~~~~Y~~----s~G~~~lReaIA~~~~~r~g~~ 188 (534)
T PLN02231 116 ITFFRE-VLALCDHPSLLDKSE-THGLFSADAIERAWQ-ILDQIPGRATGAYSH----SQGIKGLRDAIAAGIEARDGFP 188 (534)
T ss_pred cHHHHH-HHHhccCCccCCCCC-ccccCCHHHHHHHHH-HHHhcCCccccCcCC----CCCcHHHHHHHHHHHHhccCCC
Confidence 445555 443332 44555543 344456677776654 332211111112322 223455666666655 4
Q ss_pred CCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccc
Q 010538 99 ASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTK 178 (508)
Q Consensus 99 ~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~ 178 (508)
++++ +|++|+|+++|+.+++.++...+|+.|+++...|+.+.... +..|.+++.++++.+..+
T Consensus 189 ~~pe--~I~iT~Ga~~ai~~~~~~l~~~~gd~Vli~~P~Y~~y~~~~---~~~g~~~v~~~l~~~~~~------------ 251 (534)
T PLN02231 189 ADPN--DIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASI---ALHGGTLVPYYLDEATGW------------ 251 (534)
T ss_pred CCcc--cEEEeCCHHHHHHHHHHHhccCCCCEEEEeCCCChhHHHHH---HHcCCEEEEEecCcccCC------------
Confidence 4677 89999999999999999984457899999987777665554 446899999998753222
Q ss_pred cccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCC---
Q 010538 179 ISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCV--- 255 (508)
Q Consensus 179 ~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g--- 255 (508)
.+|+++++ +++++......+++++++++++||||.+++.+++.++++ +|+++|++||+|+++..-
T Consensus 252 -~~d~~~Le--~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~---------~a~~~~l~lI~DEvY~~l~y~ 319 (534)
T PLN02231 252 -GLEISELK--KQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVE---------FCKQEGLVLLADEVYQENVYV 319 (534)
T ss_pred -CCCHHHHH--HHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHH---------HHHHcCCEEEEEccchhcccC
Confidence 12677887 555321112236899999999999999999998888877 677799999999997631
Q ss_pred --CCCCCCCCC---------CC-cEEEEeccccc-cCCCc--ceEEEE---echhHhhhccccccCceEEecccchhhhh
Q 010538 256 --TQPPDLSKY---------PV-DFVVMSFYKIF-GYPTG--LGALIM---RNDAAKLLKNTYFSGGTVAASIADIDFVK 317 (508)
Q Consensus 256 --~~~~d~~~~---------~~-D~~~~S~~K~~-g~P~G--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~ 317 (508)
....++.+. +. -+++.|++|.+ | .+| +||+++ ++++++.+....
T Consensus 320 ~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g-~pGlRiGy~~~~~~~~~l~~~l~k~~----------------- 381 (534)
T PLN02231 320 PDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYG-ECGKRGGYMEVTGFTSDVREQIYKVA----------------- 381 (534)
T ss_pred CCCCcccHHHHHhhhccccCCceEEEEeccCccccc-CCccceEEEEEecCCHHHHHHHHHHH-----------------
Confidence 122222211 11 25677999955 5 446 899987 466665554321
Q ss_pred hccCccccccCCCCChhHHHHHHHHHH-------HHHhc--ChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCC
Q 010538 318 RRQGVEELFEDGTASFLSIASIRHGFN-------LINSL--TVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYT 388 (508)
Q Consensus 318 ~~~~~~~~~~~gt~~~~~~~~l~~al~-------~~~~~--g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~ 388 (508)
. ... ..+..+.+++..+++ .+.+. ..+.+.+.+.+.++++.+.|+++ +++.+..|.+
T Consensus 382 ------~-~~~-~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~------~gi~~~~p~G 447 (534)
T PLN02231 382 ------S-VNL-CSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSL------EGVTCNKAEG 447 (534)
T ss_pred ------h-hhc-CCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCceecCCCe
Confidence 0 111 223333333333331 11110 13456778889999999999887 3688776654
Q ss_pred CCcccCCCCceEEEEe--eCC--CCCc---c-CHHHH-HHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCc
Q 010538 389 SEVSYHDTGSMVSFNL--KRP--DGSW---F-GYREV-EKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHV 459 (508)
Q Consensus 389 ~~~~~~~~~~~v~~~~--~~~--~~~~---~-~~~~l-~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 459 (508)
+.++|.++ +.. +..+ . ....+ .++|++.||.+.+|..|....
T Consensus 448 --------gfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~--------------------- 498 (534)
T PLN02231 448 --------AMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVP--------------------- 498 (534)
T ss_pred --------eeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCC---------------------
Confidence 56666444 211 0000 0 01113 345678899999998664311
Q ss_pred cCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 460 CWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 460 ~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
....+|+++. .+.++++..++.|.+|+
T Consensus 499 -----------g~~~~Rit~~--~~~e~l~eal~RL~~~~ 525 (534)
T PLN02231 499 -----------GTWHFRCTIL--PQEDKIPAIVSRLTEFH 525 (534)
T ss_pred -----------CCCeEEEEeC--CCHHHHHHHHHHHHHHH
Confidence 1457999985 68899888888888765
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=202.19 Aligned_cols=265 Identities=14% Similarity=0.074 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHH-HHHHhcCCeEEEEccCC
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIR-EYALSQGAAAFAIDVEE 162 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~-~~~~~~G~~v~~v~~~~ 162 (508)
...+++++.+++++|++ .++++++++.|+++++. + +++|++|+++...|+++...+ ..+...|++++.++..
T Consensus 47 p~~~~le~~la~l~g~~----~~l~~~sG~~al~~~l~-l-l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~- 119 (378)
T TIGR01329 47 PTRTALESLLAKLDKAD----RAFAFSSGMAALDVITR-L-LNNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTT- 119 (378)
T ss_pred hHHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHH-H-hCCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCCC-
Confidence 34678999999999994 34445555669988776 4 588999999988888776543 3466789999999863
Q ss_pred ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC
Q 010538 163 AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG 242 (508)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~ 242 (508)
|+++++ +++ +++|++|++++++||+|.+.|+++|.++||+ +
T Consensus 120 -------------------d~~~le--~~i------~~~tklv~le~psnptg~v~dl~~I~~la~~------------~ 160 (378)
T TIGR01329 120 -------------------DLDKVK--AAL------GPKTKLVLLESPTNPLQKIVDIRKISEMAHA------------Q 160 (378)
T ss_pred -------------------CHHHHH--Hhc------CcCceEEEEECCCCCCCeeecHHHHHHHHHH------------c
Confidence 366777 444 4789999999999999999999999999998 8
Q ss_pred CeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEechh-HhhhccccccCceEEecccchhhhhhc
Q 010538 243 RWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDA-AKLLKNTYFSGGTVAASIADIDFVKRR 319 (508)
Q Consensus 243 g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~~~~~~~~~ 319 (508)
|+++++|++++.+.....+ .+++|++++|+||++++|.+ .|+++++++. .+++.+.....
T Consensus 161 g~~vivD~a~~~~~~~~~l-~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~---------------- 223 (378)
T TIGR01329 161 NALVVVDNTMMSPLLCNPL-ELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNST---------------- 223 (378)
T ss_pred CCEEEEECCCcccccCChh-hcCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhc----------------
Confidence 9999999999877654444 45899999999998887876 7888886654 34454432111
Q ss_pred cCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccC--------CCCCceEEEecCCCCCc
Q 010538 320 QGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRH--------ENGADVCTIYGTYTSEV 391 (508)
Q Consensus 320 ~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~--------~~~~~~~~~~~~~~~~~ 391 (508)
.+..+....+.+...+ ..+..+.++..+.+..+.+.|++.+. ....|+.+++.+..
T Consensus 224 --------G~~~~~~~a~l~~~~l-----~tl~~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~--- 287 (378)
T TIGR01329 224 --------GSGLAPFDCWLLLRGI-----KTLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQA--- 287 (378)
T ss_pred --------CCcCCHHHHHHHHccC-----CCHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhC---
Confidence 0111111111111111 13555666667777777777766531 01122223332221
Q ss_pred ccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCC
Q 010538 392 SYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCF 433 (508)
Q Consensus 392 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~ 433 (508)
...+++++|.+.+.+ ...++...|+..+|.++.|..
T Consensus 288 --~g~~~~~sf~~~~~~----~~~~~~~~L~~~~i~~s~G~~ 323 (378)
T TIGR01329 288 --KGAGSVLSFETGSVA----LSKRLVEATKLFSITVSFGSV 323 (378)
T ss_pred --CCcceEEEEEECCHH----HHHHHHHhCcCcccccCCCCC
Confidence 124789999994321 134578888888999998853
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-20 Score=194.90 Aligned_cols=348 Identities=11% Similarity=0.058 Sum_probs=219.1
Q ss_pred CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEE
Q 010538 53 SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYM 132 (508)
Q Consensus 53 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl 132 (508)
+|.+.+++.+.......+...+... +.......++++++|+++|.+. .++|++|.+... .++.++ .++||+|+
T Consensus 14 ~~~~~~~~~~a~~~~g~~~~~sr~~--yg~~~~~~~LE~~lA~~~g~e~---al~~~sG~~a~~-~~i~~l-~~~GD~Vl 86 (392)
T PLN03227 14 SPTLRQTALESLSHYGCGSCGPRGF--YGTIDAHLELEQCMAEFLGTES---AILYSDGASTTS-STVAAF-AKRGDLLV 86 (392)
T ss_pred CHHHHHHHHHHHHHhCCCCcccccc--cCChHHHHHHHHHHHHHhCCCc---EEEecCcHHHHH-HHHHHh-CCCCCEEE
Confidence 6677777666543211111112211 2234478899999999999974 588888877555 666666 78999999
Q ss_pred EecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCC-----CCCCCCceEEEE
Q 010538 133 YTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPER-----DPAGDAYNLFAF 207 (508)
Q Consensus 133 ~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~-----~~~~~~t~lv~~ 207 (508)
+++..|+++...+.. .+.+++.++..+..++ +.+. +.++.. ....+++++|++
T Consensus 87 ~~~~~h~s~~~~~~l---~~~~~~~~~~~d~~~l-----------------~~~~--~~i~~~~~a~~~~~~~~t~~vi~ 144 (392)
T PLN03227 87 VDRGVNEALLVGVSL---SRANVRWFRHNDMKDL-----------------RRVL--EQVRAQDVALKRKPTDQRRFLVV 144 (392)
T ss_pred EeccccHHHHHHHHH---cCCeEEEeCCCCHHHH-----------------HHHH--HHhhhhccccccccCCCcEEEEE
Confidence 999999988665433 3567777766432212 2222 122100 001357899999
Q ss_pred eCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCC---------CCC-CCCCcEEEEeccccc
Q 010538 208 PSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPP---------DLS-KYPVDFVVMSFYKIF 277 (508)
Q Consensus 208 ~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~---------d~~-~~~~D~~~~S~~K~~ 277 (508)
..+.|++|.+.|++++.++|++ +|+++++|++|++|..-- ++. ..++|+++.|++|.+
T Consensus 145 E~v~~~~G~i~~l~~i~~l~~~------------~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~ 212 (392)
T PLN03227 145 EGLYKNTGTLAPLKELVALKEE------------FHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAF 212 (392)
T ss_pred cCCcCCCCcccCHHHHHHHHHH------------cCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhh
Confidence 9999999999999999999998 999999999998654311 121 236799999999998
Q ss_pred cCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHH
Q 010538 278 GYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRH 357 (508)
Q Consensus 278 g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~ 357 (508)
| |.| |++..+++.++.++.. +. ...+ .++.+....++..+++..+.+ .+++.++
T Consensus 213 g-~~g-g~v~~~~~~~~~~~~~--~~-------------------~~~~-~~~~~p~~~~aa~~al~~~~~--~~~~~~~ 266 (392)
T PLN03227 213 G-SVG-GMTVGSEEVVDHQRLS--GS-------------------GYCF-SASAPPFLAKADATATAGELA--GPQLLNR 266 (392)
T ss_pred h-ccC-cEEecCHHHHHHHHHh--Cc-------------------Cccc-cCCCCHHHHHHHHHHHHHHhc--CHHHHHH
Confidence 8 765 7788888776554422 11 0111 222233233334345544333 3677889
Q ss_pred HHHHHHHHHHHHhcccCCC--CCc-eEEEecCCCCCcccCCCCceEEEEeeCCCCCc-c----CHHHHHHHHhhCCCeec
Q 010538 358 IASLGMYVRKVLLSLRHEN--GAD-VCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSW-F----GYREVEKLASLSGIQLR 429 (508)
Q Consensus 358 ~~~l~~~l~~~L~~l~~~~--~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~----~~~~l~~~L~~~gI~v~ 429 (508)
++++.++|++.|++...+. ..+ +..+... ..++++.+.+.+.+... + -...+.+.+.++|+.+.
T Consensus 267 l~~~~~~l~~~L~~~~~~~~~~~rg~~~~~~~--------~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~ 338 (392)
T PLN03227 267 LHDSIANLYSTLTNSSHPYALKLRNRLVITSD--------PISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVV 338 (392)
T ss_pred HHHHHHHHHHHHHhcCCccccccccccccCCC--------CCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEE
Confidence 9999999999997632100 000 1111111 13788989885421100 0 01357888889999986
Q ss_pred cCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhh
Q 010538 430 TGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 430 ~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~ 503 (508)
+...+.... ....++..+|++++..+|+|||+++++.+++.++-++
T Consensus 339 ~~~~~~~~~----------------------------~~~~P~~~iR~~~~~~~t~eei~~~~~~l~~~~~~~~ 384 (392)
T PLN03227 339 STGGHVKKF----------------------------LQLVPPPCLRVVANASHTREDIDKLLTVLGEAVEAIL 384 (392)
T ss_pred ecccccCCc----------------------------CCCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 421110000 0012357899999999999999999999998876554
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.9e-22 Score=195.25 Aligned_cols=322 Identities=13% Similarity=0.101 Sum_probs=221.1
Q ss_pred eeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCC--CCCCceEEEcCChHHHHHHHHh
Q 010538 44 LDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA--SMKDYKCIFTSGATAALKLVGE 121 (508)
Q Consensus 44 ld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~--~~~~~~i~~t~g~t~al~~~~~ 121 (508)
|..+-...++|.++...+.....+. ...+|..++...++...+++++++++|. .+++ +|++|.|+.+++..++.
T Consensus 36 LgqGfp~~~~P~fv~ea~~~~~~~~---~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~-eVlVT~GA~~ai~~~~~ 111 (420)
T KOG0257|consen 36 LGQGFPDFPPPKFVTEAAKNAAKEP---STNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDD-EVLVTAGANEAISSALL 111 (420)
T ss_pred ccCCCCCCCCcHHHHHHHHHHhccc---hhccccccCCchHHHHHHHHHHHHHhccccCCcc-cEEEecCchHHHHHHHH
Confidence 7777766666665544444443321 1345667777889999999999998885 3332 79999999999999998
Q ss_pred hcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC-ccCccccccccccccccccchhhhhcCCCCCCCCCCCC
Q 010538 122 AFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE-AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGD 200 (508)
Q Consensus 122 ~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~ 200 (508)
++ ..+||+|++.+.-++++.....++ |.+++.||... .+.. -...-.+|.+.++ ...++
T Consensus 112 ~l-~~~GDeVii~eP~fd~Y~~~~~ma---G~tpv~v~~~~~~g~~--------~s~~~~~D~~~le--------~~~t~ 171 (420)
T KOG0257|consen 112 GL-LNPGDEVIVFEPFFDCYIPQVVMA---GGTPVFVPLKPKEGNV--------SSSDWTLDPEELE--------SKITE 171 (420)
T ss_pred HH-cCCCCEEEEecCcchhhhhHHhhc---CCcceeeccccccccc--------cCccccCChHHHH--------hhccC
Confidence 88 788999999998888888887776 88888888762 1111 0112244889999 44578
Q ss_pred CceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCCCCCC----CCCCcEEEEe
Q 010538 201 AYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQPPDLS----KYPVDFVVMS 272 (508)
Q Consensus 201 ~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d~~----~~~~D~~~~S 272 (508)
+|++|++++++||||.+++-+++..+++ +|++||++||.|.++.. |...+.+. .+...+-++|
T Consensus 172 kTk~Ii~ntPhNPtGkvfsReeLe~ia~---------l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS 242 (420)
T KOG0257|consen 172 KTKAIILNTPHNPTGKVFSREELERIAE---------LCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGS 242 (420)
T ss_pred CccEEEEeCCCCCcCcccCHHHHHHHHH---------HHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEecc
Confidence 9999999999999999999998888887 78889999999999753 32112221 2246788999
Q ss_pred ccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHH--HH-H
Q 010538 273 FYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFN--LI-N 347 (508)
Q Consensus 273 ~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~--~~-~ 347 (508)
+.|+|| .+| +||++.++.+...+++.-. ...+...| +...+..+|+. +- .
T Consensus 243 ~gKtf~-~TGWrlGW~igp~~L~~~~~~vh~---------------------~~~~~~~T---p~q~A~a~a~~~~~~~~ 297 (420)
T KOG0257|consen 243 FGKTFG-VTGWRLGWAIGPKHLYSALFPVHQ---------------------NFVFTCPT---PIQEASAAAFALELACL 297 (420)
T ss_pred ccceee-eeeeeeeeeechHHhhhhHHHHhh---------------------ccccccCc---HHHHHHHHHHhhhhhcc
Confidence 999999 889 9999997777655554411 11111222 22223333333 21 1
Q ss_pred -hc--C-hHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCC----Ccc-----CH
Q 010538 348 -SL--T-VPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDG----SWF-----GY 414 (508)
Q Consensus 348 -~~--g-~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~-----~~ 414 (508)
-. . +..+.+.+++.++.|.+.|.++ |+++..|.+ +.+++.+++.... .+. +.
T Consensus 298 ~p~~~y~~~~~~~~y~~krdil~k~L~~l-------g~~v~~p~g--------ayyl~adfs~~~~~~~~~~~~~~~~d~ 362 (420)
T KOG0257|consen 298 QPGGSYFITELVKEYKEKRDILAKALEEL-------GLKVTGPEG--------AYYLWADFSLAKSWPFFEEILEKPDDF 362 (420)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhc-------CCccccCCC--------ceEEEEeccccccCCcchhhccCCCce
Confidence 11 1 3447889999999999999998 799988876 7888888772110 000 11
Q ss_pred HHHHHHHhhCCCeeccCCCCCchH
Q 010538 415 REVEKLASLSGIQLRTGCFCNPGA 438 (508)
Q Consensus 415 ~~l~~~L~~~gI~v~~g~~~~~~~ 438 (508)
....-.+++.|+.+-+++.+..+.
T Consensus 363 ~~~~wl~~~~Gv~~IP~saF~s~~ 386 (420)
T KOG0257|consen 363 KFVRWLIKEGGVVVIPPSAFGSRE 386 (420)
T ss_pred eeehhhhccCcEEEeCchhcCCch
Confidence 112234466788887777665543
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.3e-21 Score=194.90 Aligned_cols=322 Identities=15% Similarity=0.075 Sum_probs=210.5
Q ss_pred chHHHHHHhhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCc
Q 010538 25 SIDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDY 104 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~ 104 (508)
-|+-||+ ....=..+. --||-+.+. +|.+.++..+.. .. |+ ......+++++.+|+++|.+++
T Consensus 10 ~~~~~~~-~~~~~~~~~-~~~ylgl~~-~~~~~~~~~~~~-~~-~~----------g~~~~~~~Le~~lA~~~g~~~e-- 72 (346)
T TIGR03576 10 ALEIIRE-KISRGGRDS-LYDLTGLAG-GFKIDEEDLELL-ET-YV----------GPAIFEEKVQELGREHLGGPEE-- 72 (346)
T ss_pred HHHHHHH-HHhccCCcc-ccccccCCC-ChhHHHHHHHHH-HH-hc----------CCHHHHHHHHHHHHHHcCCCcc--
Confidence 4677777 433211111 224455554 667777765543 22 21 1246788999999999999888
Q ss_pred eEEEcCChHHHHHHHHhhcCCCCCCeEEEe---cccccchHHHHHHHHhcCCeEEEEccCCccCcccccccccccccccc
Q 010538 105 KCIFTSGATAALKLVGEAFPWSHQSSYMYT---MENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISL 181 (508)
Q Consensus 105 ~i~~t~g~t~al~~~~~~l~~~~g~~vl~~---~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~ 181 (508)
++++++|+++|+..++.++ .++|++|+++ ...|+++....+ ..|+++... .
T Consensus 73 ~ilv~~gg~~a~~~~~~al-~~~gd~Vli~~~d~p~~~s~~~~~~---l~ga~~~~~--~-------------------- 126 (346)
T TIGR03576 73 KILVFNRTSSAILATILAL-EPPGRKVVHYLPEKPAHPSIPRSCK---LAGAEYFES--D-------------------- 126 (346)
T ss_pred eEEEECCHHHHHHHHHHHh-CCCCCEEEECCCCCCCchhHHHHHH---HcCCEEecc--C--------------------
Confidence 8999999999999999999 5788988865 346666655444 447765322 1
Q ss_pred chhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC---HHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCC
Q 010538 182 LPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN---LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQP 258 (508)
Q Consensus 182 d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~---i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~ 258 (508)
+++.++ . .+++++|+++. .+++|.+++ +++|.++|++ +|+++++|++|+.+...
T Consensus 127 ~l~~l~--------~--~~~~~lIiitg-~s~~G~v~~~~~L~~i~~la~~------------~~~~livDEAy~~~~~~ 183 (346)
T TIGR03576 127 ELSELK--------K--IDGTSLVVITG-STMDLKVVSEEDLKRVIKQAKS------------KEAIVLVDDASGARVRR 183 (346)
T ss_pred CHHHHh--------h--CcCceEEEEEC-CCCCCcccCHHHHHHHHHHHHH------------cCCEEEEECCccccccc
Confidence 122233 1 13568888765 689999965 5555555665 89999999999876432
Q ss_pred C----CCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChh
Q 010538 259 P----DLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFL 334 (508)
Q Consensus 259 ~----d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 334 (508)
. .....+.|+++.|++|+++|+. .|++++++++++.+..... .+.. +.+.+
T Consensus 184 ~~~~~~~~~~~~divv~s~SKalaG~r-~G~v~~~~~li~~l~~~~~-----------------------~~~~-s~~~~ 238 (346)
T TIGR03576 184 LYGQPPALDLGADLVVTSTDKLMDGPR-GGLLAGRKELVDKIKSVGE-----------------------QFGL-EAQAP 238 (346)
T ss_pred cCCCCCHHHcCCcEEEeccchhccccc-eEEEEeCHHHHHHHHHhhc-----------------------Cccc-CccHH
Confidence 1 1223357999999999875476 5999999998877765411 1111 23444
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCH
Q 010538 335 SIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGY 414 (508)
Q Consensus 335 ~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 414 (508)
.+++..++++.+ ..+.+++.+.+..+++.+.++.+ .+. +.. .++++++++..+. .
T Consensus 239 ~~~aa~~aL~~~---~~~~~~~~l~~r~~~~~~~l~~~---------~~~-~~~--------~~f~~~~~~~~~~----~ 293 (346)
T TIGR03576 239 LLAAVVRALEEF---ELSRIRDAFKRKEEVYLRLFDKL---------NVE-RTP--------TGFVIKGVEEEKL----I 293 (346)
T ss_pred HHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHhC---------CCC-cCC--------CeEEEEeCCCCCH----H
Confidence 566666677642 24566677777777777777643 222 222 5678887754211 1
Q ss_pred HHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHH----HHHH
Q 010538 415 REVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFE----DAKV 490 (508)
Q Consensus 415 ~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~e----ev~~ 490 (508)
..+.++|+++||.++++..+. + .++++|||++ +.+ |+++
T Consensus 294 ~~~~~ll~~~gV~v~~~~~f~-~---------------------------------~~~~vRis~~---~~~~~~~~~~~ 336 (346)
T TIGR03576 294 EIGLDLLRNYGIITITAVGMP-G---------------------------------ASKTLRFDLA---AKDAERIGDDY 336 (346)
T ss_pred HHHHHHHHhCCEEEeCCcccC-C---------------------------------CCCeEEEEEe---cChHHhcCHHH
Confidence 247788899999999875431 1 1579999999 444 7999
Q ss_pred HHHhhhhhh
Q 010538 491 NRCSSFDFV 499 (508)
Q Consensus 491 l~~~~~~~~ 499 (508)
++++|++-+
T Consensus 337 ~~~al~~~~ 345 (346)
T TIGR03576 337 LVEAVKDSL 345 (346)
T ss_pred HHHHHHhcc
Confidence 999987643
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-20 Score=196.49 Aligned_cols=353 Identities=12% Similarity=0.026 Sum_probs=216.0
Q ss_pred hhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 33 EFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 33 ~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
.|+.. ...||++++...+.+..+ .+. +... +. .+..++......+++++.+|+++|+++. ++ ++++
T Consensus 24 ~~~~~-~~pi~~~~~~~~~~~~~~-~~~---~~~~----~~-~~~y~r~~~p~~~~Le~~lA~l~G~~~~---~~-~~sG 89 (398)
T PRK07504 24 QFGET-SEALFLTQGFVYDTAEAA-EAR---FKGE----DP-GFIYSRYSNPTVDMFEKRMCALEGAEDA---RA-TASG 89 (398)
T ss_pred CCCCC-cCCeECCCCccCCCHHHH-HHH---hccC----cC-CceeecCCCchHHHHHHHHHHHhCCCee---eE-ecCH
Confidence 57666 678999998877643333 221 1111 11 1111111123467889999999999866 34 5677
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecccccchHHHH-HHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCC
Q 010538 113 TAALKLVGEAFPWSHQSSYMYTMENHNSVLGIR-EYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGAS 191 (508)
Q Consensus 113 t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~-~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~ 191 (508)
+.|+..++.++ +++|++|+++...|+++.... ..+...|++++.++. . |+++++ ++
T Consensus 90 ~~Ai~~~l~~~-l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~-----~---------------d~e~l~--~a 146 (398)
T PRK07504 90 MAAVTAAILCQ-VKAGDHVVAARALFGSCRYVVETLLPRYGIESTLVDG-----L---------------DLDNWE--KA 146 (398)
T ss_pred HHHHHHHHHHH-hCCCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEECC-----C---------------CHHHHH--Hh
Confidence 78888777766 688999999998888765543 345667999988852 2 467788 54
Q ss_pred CCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEE
Q 010538 192 FPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVM 271 (508)
Q Consensus 192 l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~ 271 (508)
+ +++|++|++++++||+|.+.|+++|.++|++ +|+++++|++++.+..... .+.++|+++.
T Consensus 147 i------~~~tklV~lesp~NptG~v~dl~~I~~la~~------------~gi~lvvD~a~a~~~~~~~-~~~gaDivv~ 207 (398)
T PRK07504 147 V------RPNTKVFFLESPTNPTLEVIDIAAVAKIANQ------------AGAKLVVDNVFATPLFQKP-LELGAHIVVY 207 (398)
T ss_pred c------CcCceEEEEECCCCCCcEecCHHHHHHHHHH------------cCCEEEEECCccccccCCc-hhhCCCEEEe
Confidence 4 5689999999999999999999999999998 8999999999987654322 3458999999
Q ss_pred eccccccCCC-cc-eEEEEechhHhh-hccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHh
Q 010538 272 SFYKIFGYPT-GL-GALIMRNDAAKL-LKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINS 348 (508)
Q Consensus 272 S~~K~~g~P~-G~-G~l~~~~~~~~~-l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~ 348 (508)
|+||+++++. .+ |+++.+++.+.+ ++... +.....++....+.+..+++.
T Consensus 208 S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~------------------------~~~g~~~s~~~A~~~l~~L~t--- 260 (398)
T PRK07504 208 SATKHIDGQGRCLGGVVLSDKAWIEEHLQDYF------------------------RHTGPSLSPFNAWTLLKGLET--- 260 (398)
T ss_pred eccccccCCccceEEEEEeCcHHHHHHHHHHH------------------------HHhCCCCCHHHHHHHHhccch---
Confidence 9999998553 15 455566655432 21110 001112333333333334443
Q ss_pred cChHHHHHHHHHHHHHHHHHHhcccCCCCCceE-EEecCCCCCcccC---------CCCceEEEEeeCCCCCccCHHHHH
Q 010538 349 LTVPAICRHIASLGMYVRKVLLSLRHENGADVC-TIYGTYTSEVSYH---------DTGSMVSFNLKRPDGSWFGYREVE 418 (508)
Q Consensus 349 ~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~-~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~~~~l~ 418 (508)
+..+.++..+++.++.+.|++.+ ++ +++-|.-. ..+. .-+++++|.+++. .. ....+.
T Consensus 261 --l~~R~~~~~~na~~la~~L~~~p------~v~~v~yp~l~-~~~~~~~~~~~~~g~g~~~s~~~~~~-~~--~~~~~~ 328 (398)
T PRK07504 261 --LPVRVRQQTESAAAIADFLAGHP------KVARVIYPGRA-DHPQADIIAKQMTGGSTLVAFELKGG-KE--AAFRFL 328 (398)
T ss_pred --HHHHHHHHHHHHHHHHHHHHcCC------CccEEECCCCC-CCccHHHHHHhCCCCccEEEEEeCCC-HH--HHHHHH
Confidence 45566667788888889998763 44 34333211 0000 1278999999642 11 112345
Q ss_pred HHHhhCCCeeccCCCCCchHHHhhcCCChhhh----hhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHh
Q 010538 419 KLASLSGIQLRTGCFCNPGACAKYLGLSHSDL----LSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCS 494 (508)
Q Consensus 419 ~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~----~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~ 494 (508)
+.|+--++.++-|...+.-. ++.. -.++.+ .+.+| ..++.||+|++.-+.++=++.+.++
T Consensus 329 ~~l~~~~~~~slG~~~sl~~-~p~~-~~~~~~~~~~~~~~g--------------i~~~liR~svGlE~~~dl~~dl~~a 392 (398)
T PRK07504 329 NALKIVRISNNLGDAKSLIT-HPAT-TTHKNLSPEARAELG--------------ISEGFLRLSAGLEDTDDLIEDLAAA 392 (398)
T ss_pred HhCCcceecccCCCCCeeee-CCCC-CCcccCCHHHHHhcC--------------CCCCeEEEEeccCCHHHHHHHHHHH
Confidence 55554455555553322110 0000 001111 11232 3478999999986655555555555
Q ss_pred hh
Q 010538 495 SF 496 (508)
Q Consensus 495 ~~ 496 (508)
|.
T Consensus 393 l~ 394 (398)
T PRK07504 393 LK 394 (398)
T ss_pred HH
Confidence 54
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-21 Score=211.54 Aligned_cols=326 Identities=11% Similarity=-0.016 Sum_probs=224.2
Q ss_pred hhhhhHHHHHHHHHHHHHcCCCCCCceEEEcC-ChHHHHHHHHhhcCC-------CCCCeEEEecccccchHHHHHHHHh
Q 010538 79 SLATCDIVRAAREQVLDYFNASMKDYKCIFTS-GATAALKLVGEAFPW-------SHQSSYMYTMENHNSVLGIREYALS 150 (508)
Q Consensus 79 ~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~-g~t~al~~~~~~l~~-------~~g~~vl~~~~~h~s~~~~~~~~~~ 150 (508)
+....+.+.+..+++++++|.+.. .+-+ +++.|...++.++.. ..+++||++..+|.+.... +..
T Consensus 538 sQG~lq~i~elq~~l~eLtGmd~~----Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpas---a~~ 610 (954)
T PRK12566 538 AEGYRAMIDELEAWLCAITGFDAI----CMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPAS---AQM 610 (954)
T ss_pred hcCHHHHHHHHHHHHHHHHCCCeE----eecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHH---HHH
Confidence 445678888999999999999854 4444 445455344444321 2357889999999766544 444
Q ss_pred cCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCC
Q 010538 151 QGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNP 230 (508)
Q Consensus 151 ~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~ 230 (508)
.|++|+.||.+.++.+ |+++++ +.+++ .++++.+|+++++++..+...|+++|++++|+
T Consensus 611 ~GieVv~Vp~D~~G~i---------------Dle~L~--a~I~~---~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~- 669 (954)
T PRK12566 611 AGMRVVIVECDPDGNV---------------DLDDLK--AKAAA---AGDRLSCLMITYPSTHGVYEEGIREICEVVHQ- 669 (954)
T ss_pred CCCEEEEeccCCCCCc---------------CHHHHH--HHhhc---cCCCEEEEEEEecCcCceecchHHHHHHHHHH-
Confidence 6999999999877777 688888 66632 24788999999998887777889999999998
Q ss_pred ccccccCCCCCCCeEEEEeccccCCCCCCC-CCCCCCcEEEEeccccccCCCcceEEEEec-hhHhhhccccccCceEEe
Q 010538 231 ERILEISPFSKGRWMVLIDAAKGCVTQPPD-LSKYPVDFVVMSFYKIFGYPTGLGALIMRN-DAAKLLKNTYFSGGTVAA 308 (508)
Q Consensus 231 ~~~~~~~~~~~~g~~vivD~a~~~g~~~~d-~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~-~~~~~l~~~~~g~~~~~~ 308 (508)
+|++|++|+++..+..+++ ..++|+|++++++||||++|.|.|..++.. ...+.+.|.+.++..+..
T Consensus 670 -----------~Galv~vDgA~~~a~~~l~~Pg~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~ 738 (954)
T PRK12566 670 -----------HGGQVYMDGANLNAQVGLARPADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPV 738 (954)
T ss_pred -----------cCCEEEEEeeChhhccCCCChhhcCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCC
Confidence 8999999999998887777 478999999999999999999988888887 666667777665431100
Q ss_pred cccchhhhhhccCccccccCCCC-C--hhHHHHHHHHHHHHHhcChHHHHHHH--HHHHHHHHHHHhcccCCCCCceEEE
Q 010538 309 SIADIDFVKRRQGVEELFEDGTA-S--FLSIASIRHGFNLINSLTVPAICRHI--ASLGMYVRKVLLSLRHENGADVCTI 383 (508)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~gt~-~--~~~~~~l~~al~~~~~~g~~~i~~~~--~~l~~~l~~~L~~l~~~~~~~~~~~ 383 (508)
.+.+..+ |+. + +.+...+-.|..++...|.+..+.+. ..+++|+++.|.+.. ++.+
T Consensus 739 ------------~G~~~r~-ga~S~~~~gsa~~l~~A~~Yi~~lG~eLk~aa~~ailnAnYla~rL~~~~------~v~~ 799 (954)
T PRK12566 739 ------------EGPDPNN-GAVSAAPWGSASILPISWMYIAMMGPQLADASEVAILSANYLANQLGGAF------PVLY 799 (954)
T ss_pred ------------CCCCCCC-CceeecccchHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHhHhhC------CCCc
Confidence 0011111 322 2 22222344567777777776333333 678999999997642 2333
Q ss_pred ecCCCCCcccCCCCceEEEEeeCCC-CCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCC
Q 010538 384 YGTYTSEVSYHDTGSMVSFNLKRPD-GSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWD 462 (508)
Q Consensus 384 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 462 (508)
.+... .-.+-..+.+...+ ....+..++.+.|.++||.... ..+ +
T Consensus 800 -~~~~~-----~~~hEfii~~~~l~~~~g~~~~dvakRL~d~Gihapt-~~f-P-------------------------- 845 (954)
T PRK12566 800 -RGRNE-----RVAHECILDLRPLKAQTGISEEDVAKRLMDYGFHAPT-MSF-P-------------------------- 845 (954)
T ss_pred -CCCCC-----CeeeEEEEEccccccccCCCHHHHHHHHHHCCcEEeE-Eee-c--------------------------
Confidence 22111 00122222222211 1124456799999999998654 211 1
Q ss_pred CccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhhh
Q 010538 463 DNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQF 504 (508)
Q Consensus 463 ~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~~ 504 (508)
..+.+||+++.++|.+|+|+++++|+.+.+.++.
T Consensus 846 --------v~~~LmIepTE~eskeEIDrf~eAL~~I~~e~~~ 879 (954)
T PRK12566 846 --------VPGTLMVEPTESESKAELDRFVEAMLSIRAEIGK 879 (954)
T ss_pred --------cCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 1578999999999999999999999999887654
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.6e-21 Score=199.32 Aligned_cols=310 Identities=17% Similarity=0.137 Sum_probs=222.8
Q ss_pred eeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhc
Q 010538 44 LDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAF 123 (508)
Q Consensus 44 ld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l 123 (508)
.-....+.+++.+.+.+.. ++.....++. ..+.+..+.+++..+++++++.+.+ ..-.||+|+|+|+.+++.+.
T Consensus 66 ~~~~~~~~~~~~a~~~~~~-~~~~nl~d~~----~~p~a~~~E~~~v~~l~~l~~~~~~-~~G~~t~GgTean~lal~aa 139 (460)
T COG0076 66 LAGFCPTRVPPVAAELLVS-ALNKNLGDPD----ESPAAAELEERVVNMLSDLLGAPEE-ASGTFTSGGTEANLLALLAA 139 (460)
T ss_pred EEccCCCCCHHHHHHHHHH-HHhhcCCCcc----cChhHHHHHHHHHHHHHHHhCCCCC-CceEEEcChHHHHHHHHHHH
Confidence 3334445445544454433 3332222222 2234667788899999999999633 26899999999998776554
Q ss_pred CCCC-------------CCeEEEecccccchHHHHHHHHhcCCeEEEEccCC-ccCccccccccccccccccchhhhhcC
Q 010538 124 PWSH-------------QSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE-AVDNDGLSESLVTSTKISLLPIQRRKG 189 (508)
Q Consensus 124 ~~~~-------------g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~ 189 (508)
.+.. ..+|+++...|.|+.....++ |++++.+|... +..+ |+++++
T Consensus 140 r~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~~Kaa~~l---G~~~~~v~~~~~~~~i---------------d~~~l~-- 199 (460)
T COG0076 140 RERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARYL---GLGLRRVPTVPTDYRI---------------DVDALE-- 199 (460)
T ss_pred HHHHHHHhhhcccccCCCCeEEecCcchhHHHHHHHHh---CCCceeEEeccCcccc---------------CHHHHH--
Confidence 3211 127999999999888776665 99999999887 5556 788998
Q ss_pred CCCCCCCCCCCCce--EEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCC-------C
Q 010538 190 ASFPERDPAGDAYN--LFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPP-------D 260 (508)
Q Consensus 190 ~~l~~~~~~~~~t~--lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~-------d 260 (508)
+++++ .|. +|+.+.+.+++|.+.|+++|.++|++ +++++|||+|.+....|+ +
T Consensus 200 ~~i~~------~t~~g~vV~~aGtT~~G~iDdi~~ia~ia~~------------~~i~lHVDAA~GG~~~pf~~~~~~~~ 261 (460)
T COG0076 200 EAIDE------NTIGGVVVGTAGTTDTGSIDDIEELADIAEE------------YGIWLHVDAAFGGFLLPFLEPDGRWD 261 (460)
T ss_pred HHHHh------hccCceEEEEecCCCCCccCCHHHHHHHHHH------------cCCcEEEEccccceeecccCccchhh
Confidence 66654 333 48889999999999999999999998 899999999998765544 3
Q ss_pred CCCCCCcEEEEeccccccCCCcceEEEEech-hHhhh-c--cccccCceEEecccchhhhhhccCccccccCCCCChhHH
Q 010538 261 LSKYPVDFVVMSFYKIFGYPTGLGALIMRND-AAKLL-K--NTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSI 336 (508)
Q Consensus 261 ~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~-~~~~l-~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~ 336 (508)
+.--++|.++.|+||++..|.|+|+++++++ ...+. . ..+.+++. .......|+.+....
T Consensus 262 f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~e~l~~~~~~~~~yl~~~~----------------~~~~ti~~sr~~~~~ 325 (460)
T COG0076 262 FGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILIFADYYLPGGG----------------IPNFTILGSRPGRQA 325 (460)
T ss_pred cCCCCceEEEECcccccCCCCCceEEEEECHHHhhhhhhcccccCCCCC----------------cCceeEeeccchHHH
Confidence 3334789999999998777999999999987 33322 1 22222210 122233456666678
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHH
Q 010538 337 ASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYRE 416 (508)
Q Consensus 337 ~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 416 (508)
+++++.+..+...|+.++.+++.++++++.+.|+++ +.++++.++. .++|+|++++.... ..+
T Consensus 326 ~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~------~~~e~~~~p~--------l~~V~fr~~~~~~~---~~~ 388 (460)
T COG0076 326 LALYANLRRLGREGYRKLLDRTLELARYLAEELEKL------GDFELVNEPE--------LPIVAFRLKDDEDT---LAD 388 (460)
T ss_pred HHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhC------CCcEeecCCc--------cceEEEEcCCcccc---hhc
Confidence 888899999888899999999999999999999998 3599998775 79999999553210 122
Q ss_pred HHHHHhhCCCeecc
Q 010538 417 VEKLASLSGIQLRT 430 (508)
Q Consensus 417 l~~~L~~~gI~v~~ 430 (508)
....++..|..+..
T Consensus 389 ~~~~~~~~gw~v~~ 402 (460)
T COG0076 389 LSERLDRRGWQVPA 402 (460)
T ss_pred hHHHHHhcCceeec
Confidence 55666667777755
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-20 Score=198.95 Aligned_cols=328 Identities=16% Similarity=0.033 Sum_probs=212.5
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccC
Q 010538 86 VRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVD 165 (508)
Q Consensus 86 ~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~ 165 (508)
..++|+.++++++.+ .+++|+|+|+|+.+++.++ .++|| |+++...++++..++.+ .|.+++.+|.+....
T Consensus 80 ~~~Lreaia~~~~~~----~vv~t~ggt~A~~~~~~al-l~pGD-Vii~~p~~~~~~~~i~~---~G~~~v~v~~~~~~~ 150 (460)
T PRK13238 80 YYRLEDAVKDIFGYP----YTIPTHQGRAAEQILFPVL-IKKGD-VVPSNYHFDTTRAHIEL---NGATAVDLVIDEALD 150 (460)
T ss_pred HHHHHHHHHHHhCCC----cEEECCCHHHHHHHHHHHh-CCCCC-EEccCCcccchHHHHHH---cCCEEEEEecccccc
Confidence 677889999999874 5899999999999999998 78889 88887777777666554 599999998863200
Q ss_pred ccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCc-cccCHHHHHHHHcCCccccccCCCCCCCe
Q 010538 166 NDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSG-SRFNLDLINIMKKNPERILEISPFSKGRW 244 (508)
Q Consensus 166 ~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG-~~~~i~~i~~l~~~~~~~~~~~~~~~~g~ 244 (508)
.+. .-..+-.+|+++++ +.+.+. ..++|++|++++++|+|| .+++.+.+.++++ +|++||+
T Consensus 151 ~~~-----~~~f~g~id~e~Le--~~i~~~--~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~---------ia~~~gi 212 (460)
T PRK13238 151 TGS-----RHPFKGNFDLEKLE--ALIEEV--GAENVPFIVMTITNNSAGGQPVSMANLRAVYE---------IAKKYGI 212 (460)
T ss_pred ccc-----cccccCCcCHHHHH--HHHhhc--CCCceeEEEEecCCCCCCCcCCCHHHHHHHHH---------HHHHcCC
Confidence 000 00001113789998 666321 014799999999999997 8888764444433 3334999
Q ss_pred EEEEeccccCC-----------CCCCCCCC------CCCcEEEEeccccccCCCcceEEEEe-chhHhhhccccccCceE
Q 010538 245 MVLIDAAKGCV-----------TQPPDLSK------YPVDFVVMSFYKIFGYPTGLGALIMR-NDAAKLLKNTYFSGGTV 306 (508)
Q Consensus 245 ~vivD~a~~~g-----------~~~~d~~~------~~~D~~~~S~~K~~g~P~G~G~l~~~-~~~~~~l~~~~~g~~~~ 306 (508)
+||.|+++..+ ....++.+ ...|++++|++|.+.+|.| |+++.+ +++.++++......
T Consensus 213 ~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~G-G~i~~~d~~l~~~~~~~~~~~--- 288 (460)
T PRK13238 213 PVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVNIG-GLLCFRDEDLFTECRTLCILY--- 288 (460)
T ss_pred EEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCcce-eEEEcChHHHHHHhhhccccc---
Confidence 99999988542 23333321 2479999999996655877 888887 46776666543211
Q ss_pred EecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecC
Q 010538 307 AASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGT 386 (508)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~ 386 (508)
+.....|.++...+.++..+++...+ +...++..+.+++|.+.|.+. |+.+..|
T Consensus 289 ----------------~g~~t~~g~~~~~~~Ala~~l~e~~~---~~~~~~~~~~~~~l~~~L~~~-------G~~~~~p 342 (460)
T PRK13238 289 ----------------EGFPTYGGLAGRDMEALAVGLYEGMD---EDYLAYRIGQVEYLGEGLEEA-------GVPIQTP 342 (460)
T ss_pred ----------------CCcccccCcHHHHHHHHHhhHHHhhC---hHHHHHHHHHHHHHHHHHHHC-------CCCeEcc
Confidence 01112344455556666666653222 222333344579999999886 7888877
Q ss_pred CCCCcccCCCCceEEEEeeCC----CCCcc-CHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccC
Q 010538 387 YTSEVSYHDTGSMVSFNLKRP----DGSWF-GYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCW 461 (508)
Q Consensus 387 ~~~~~~~~~~~~~v~~~~~~~----~~~~~-~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 461 (508)
.+ ++.+.+++... +...+ +.....+++.+.||.+.++..+..+... -.|.
T Consensus 343 ~G--------g~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~-~~~~---------------- 397 (460)
T PRK13238 343 AG--------GHAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGRDP-KTGE---------------- 397 (460)
T ss_pred CC--------ceEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeecccceecccCC-CCcc----------------
Confidence 65 67777777542 11222 2234567778999999887655433210 0000
Q ss_pred CCccccCCCCCceEEEecCC-CCCHHHHHHHHHhhhhhhh
Q 010538 462 DDNDIIHGKPTGAIRVSFGY-MSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 462 ~~~~~~~~~~~~~iRis~~~-~~t~eev~~l~~~~~~~~~ 500 (508)
........+|+++.- --|.++++.++++|..+.+
T Consensus 398 -----~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~ 432 (460)
T PRK13238 398 -----QLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKE 432 (460)
T ss_pred -----ccCCccceEEEecccccCCHHHHHHHHHHHHHHHH
Confidence 000124789999983 2389999999999887753
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-20 Score=193.21 Aligned_cols=274 Identities=14% Similarity=0.078 Sum_probs=191.7
Q ss_pred HHHHHHHHHHcCCC-CCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccC
Q 010538 87 RAAREQVLDYFNAS-MKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVD 165 (508)
Q Consensus 87 ~~~r~~la~~~~~~-~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~ 165 (508)
.++++.+|+++|++ ++ +|++|+|+++++.++... .++|+ |++.. |++......++..|++++.+|.+. ..
T Consensus 56 ~~L~~~ia~~~~~~~~~--~I~i~~Gs~e~i~~l~~~--~~~g~-v~v~~---P~y~~y~~~~~~~g~~~~~v~~~~-~~ 126 (339)
T PRK06959 56 DGLAACAARYYGAPDAA--HVLPVAGSQAAIRALPAL--LPRGR-VGIAP---LAYSEYAPAFARHGHRVVPLDEAA-DT 126 (339)
T ss_pred HHHHHHHHHHhCCCCcc--cEEECcCHHHHHHHHHHh--cCCCe-EEEcC---CCcHHHHHHHHHCCCEEEeecccc-hh
Confidence 67889999999997 46 899999999999977654 35666 66555 455555555666799999887653 11
Q ss_pred ccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeE
Q 010538 166 NDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWM 245 (508)
Q Consensus 166 ~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~ 245 (508)
+. +.++++++++++||||.+++.+++.++++. +++++++
T Consensus 127 --------------------~~------------~~~~~v~l~nPnNPTG~~~s~~~l~~l~~~---------~~~~~~~ 165 (339)
T PRK06959 127 --------------------LP------------AALTHLIVVNPNNPTAERLPAARLLRWHAQ---------LAARGGT 165 (339)
T ss_pred --------------------cc------------ccCCEEEEeCCCCCCCCCCCHHHHHHHHHH---------HHHcCCE
Confidence 12 134688899999999999999999988752 3347889
Q ss_pred EEEeccccCCCCCCCCCCC---CCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhcc
Q 010538 246 VLIDAAKGCVTQPPDLSKY---PVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQ 320 (508)
Q Consensus 246 vivD~a~~~g~~~~d~~~~---~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~ 320 (508)
+|+|+++.......++... +--+++.|++|.|| .+| +||+++++++++.+......
T Consensus 166 vI~DEay~~~~~~~s~~~~~~~~~vi~l~SfSK~~g-l~GlRiGy~v~~~~li~~l~~~~~~------------------ 226 (339)
T PRK06959 166 LIVDEAFADTLPAASLAAHTDRPGLVVLRSVGKFFG-LAGVRAGFVLAAPALLAALRDALGA------------------ 226 (339)
T ss_pred EEEECCCccCCCcccchhccCCCCEEEEecChhhcC-CcchheEEEecCHHHHHHHHHhcCC------------------
Confidence 9999998753322222211 22378899999998 557 89999999888776544111
Q ss_pred CccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceE
Q 010538 321 GVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMV 400 (508)
Q Consensus 321 ~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 400 (508)
.+.+.....++.++++-. .-.+..++++.+.++++.+.|+++ ++++. + . +.++
T Consensus 227 --------~~vs~~~q~a~~~~L~~~--~~~~~~~~~~~~~r~~l~~~L~~~-------g~~~~-~-~--------~~f~ 279 (339)
T PRK06959 227 --------WTVSGPARHAVRAAFADA--AWQAAMRERLAADGARLAALLRAH-------GFAVH-A-T--------PLFS 279 (339)
T ss_pred --------CCCcHHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHHHHHHC-------CCCcc-C-c--------ceEE
Confidence 112333444444454321 124667788888999999999886 45543 1 1 5677
Q ss_pred EEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecC
Q 010538 401 SFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFG 480 (508)
Q Consensus 401 ~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~ 480 (508)
++++++ . ..+.+.|.++||.|+. |. ..+++|||++
T Consensus 280 ~~~~~~--~-----~~l~~~l~~~GI~vr~---~~-----------------------------------~~~~lRisi~ 314 (339)
T PRK06959 280 WTDDPR--A-----AALHAALARRGIWTRY---FA-----------------------------------PPPSVRFGLP 314 (339)
T ss_pred EEeCCC--H-----HHHHHHHHhCCeEEEE---CC-----------------------------------CCCeEEEECC
Confidence 777642 1 3478889999999974 21 1468999984
Q ss_pred CCCCHHHHHHHHHhhhhhhhhhh
Q 010538 481 YMSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 481 ~~~t~eev~~l~~~~~~~~~~~~ 503 (508)
.+.+|+++++++|+++++-++
T Consensus 315 --~~~~e~~~l~~al~~~~~~~~ 335 (339)
T PRK06959 315 --ADEAEWQRLEDALAECVPTLA 335 (339)
T ss_pred --CCHHHHHHHHHHHHHHHHHHh
Confidence 288999999999998887664
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.5e-21 Score=198.00 Aligned_cols=315 Identities=13% Similarity=0.024 Sum_probs=201.8
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHH-HHhcCCeEEEEccCCcc
Q 010538 86 VRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREY-ALSQGAAAFAIDVEEAV 164 (508)
Q Consensus 86 ~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~-~~~~G~~v~~v~~~~~~ 164 (508)
.+++++.+|+++|.+. .++ ++|++.|+.+++.++ .++|++|+++...|+........ ....|+++..++..
T Consensus 63 ~~~Le~~lA~l~G~~~---al~-~~sG~~Ai~~~l~al-~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~~~--- 134 (386)
T PRK06767 63 VKLFEERMAVLEGGEE---ALA-FGSGMAAISATLIGF-LKAGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDME--- 134 (386)
T ss_pred hHHHHHHHHHHhCCCc---EEE-ECCHHHHHHHHHHHH-hCCCCEEEEcCCcHHHHHHHHHHHHhhcCeEEEEeCCC---
Confidence 6778999999999753 345 455567999998888 68899999998888776655443 44567777666542
Q ss_pred CccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCe
Q 010538 165 DNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRW 244 (508)
Q Consensus 165 ~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~ 244 (508)
|+++++ +++ .++|++|++++++||||.+.|+++|.++|++ +|+
T Consensus 135 -----------------d~~~l~--~~i------~~~tklV~lesp~NptG~v~dl~~I~~la~~------------~g~ 177 (386)
T PRK06767 135 -----------------TEADIE--NKI------RPNTKLIFVETPINPTMKLIDLKQVIRVAKR------------NGL 177 (386)
T ss_pred -----------------CHHHHH--Hhh------CcCceEEEEeCCCCCCceecCHHHHHHHHHH------------cCC
Confidence 356677 444 4678999999999999999999999999998 899
Q ss_pred EEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCc
Q 010538 245 MVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGV 322 (508)
Q Consensus 245 ~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~ 322 (508)
++++|++++.+....++ ..++|+++.|++|+++++.+ .|+++.+++.++++......
T Consensus 178 ~vivD~a~a~~~~~~pl-~~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~-------------------- 236 (386)
T PRK06767 178 LVIVDNTFCSPYLQRPL-ELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRK-------------------- 236 (386)
T ss_pred EEEEECCCcccccCCch-hcCCcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHH--------------------
Confidence 99999999866544444 35789999999999986643 48888888876554322100
Q ss_pred cccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEE-ecCCCCCc--ccCCCCce
Q 010538 323 EELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTI-YGTYTSEV--SYHDTGSM 399 (508)
Q Consensus 323 ~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~-~~~~~~~~--~~~~~~~~ 399 (508)
...+..+....+.+..+++ .+..+.++.+++++++.+.|++.+ +++. .-|+.... --..-+++
T Consensus 237 ---~~g~~~~~~~a~l~~~~L~-----tl~~r~~~~~~~a~~la~~L~~~p------~v~~v~~p~~~~~~~~~~~~gg~ 302 (386)
T PRK06767 237 ---DIGGIMAPFDAWLLLRGLK-----TLAVRMDRHCDNAEKIVSFLKNHD------AVEGVWYPEGELASRQMKRGGGV 302 (386)
T ss_pred ---HhCCCCCHHHHHHHHcCCC-----cHHHHHHHHHHHHHHHHHHHHcCC------CccEEECCCcHHHHHhCCCCCce
Confidence 0111222222222222222 245666788999999999999884 5654 32311000 00012789
Q ss_pred EEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEec
Q 010538 400 VSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSF 479 (508)
Q Consensus 400 v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~ 479 (508)
++|.+++.. .....+.+.|+..++.++-|...+.-. +++. ..++.+...- +.-.+..++.||+|+
T Consensus 303 vsf~l~~~~---~~~~~f~~~l~~~~~~~s~G~~~sl~~-~p~~-~~~~~~~~~~----------~~~~gi~~~l~R~sv 367 (386)
T PRK06767 303 ISFSIKGGK---EETQAFINDLHFITIAVSLGDTETLIQ-HPAT-MTHAAIPAEL----------RQEMGIYDNLIRLSV 367 (386)
T ss_pred EEEEEcCCH---HHHHHHHHhCCccEEecCCCCcCcccc-CCCc-cccccCCHHH----------HHhcCCCCCeEEEEe
Confidence 999996421 123457888888888888874332210 0000 0111111100 001123478999999
Q ss_pred CCCCCHHHHHHHHHhh
Q 010538 480 GYMSTFEDAKVNRCSS 495 (508)
Q Consensus 480 ~~~~t~eev~~l~~~~ 495 (508)
+.-+.++=++.+-++|
T Consensus 368 GlE~~~dl~~dl~~al 383 (386)
T PRK06767 368 GLESWEDIVSDLEQAL 383 (386)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 9865544444444444
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.5e-21 Score=195.31 Aligned_cols=295 Identities=14% Similarity=0.093 Sum_probs=196.5
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEEccCCc
Q 010538 85 IVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDVEEA 163 (508)
Q Consensus 85 ~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~~~~ 163 (508)
...++++++|++. ..+ .+++++++.|+.+++.++ +++|++|+++...|+.+..+.. .+...|++++.++.+..
T Consensus 52 ~~~~Le~~lA~l~--~~~---~v~~~sG~~Ai~~~l~al-l~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~~~ 125 (366)
T PRK07582 52 TWRALEAALGELE--GAE---ALVFPSGMAAITAVLRAL-LRPGDTVVVPADGYYQVRALAREYLAPLGVTVREAPTAGM 125 (366)
T ss_pred cHHHHHHHHHHHc--CCC---EEEECCHHHHHHHHHHHh-cCCCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEECCCCh
Confidence 4677889999998 333 555666678999999888 7889999999877776655543 45668999999987532
Q ss_pred cCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCC
Q 010538 164 VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGR 243 (508)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g 243 (508)
.. . ..++|++|++++++||+|.+.|+++|.++|++ +|
T Consensus 126 ~~---------------------~----------~~~~t~lV~le~p~NPtg~v~di~~I~~~a~~------------~g 162 (366)
T PRK07582 126 AE---------------------A----------ALAGADLVLAETPSNPGLDVCDLAALAAAAHA------------AG 162 (366)
T ss_pred HH---------------------H----------hccCceEEEEECCCCCCCCccCHHHHHHHHHH------------cC
Confidence 10 1 12578999999999999999999999999998 89
Q ss_pred eEEEEecccc--CCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEe-chhHhhhccccccCceEEecccchhhhhh
Q 010538 244 WMVLIDAAKG--CVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMR-NDAAKLLKNTYFSGGTVAASIADIDFVKR 318 (508)
Q Consensus 244 ~~vivD~a~~--~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~ 318 (508)
++++||++++ .+..|++ +++|+++.|+||+++||.| .|+++.+ +++++.+....
T Consensus 163 ~~lvVD~t~~~~~~~~p~~---~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~------------------ 221 (366)
T PRK07582 163 ALLVVDNTTATPLGQRPLE---LGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWR------------------ 221 (366)
T ss_pred CEEEEECCCCCccccCchh---cCCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHH------------------
Confidence 9999999985 4555554 4689999999999987877 5888875 45544443221
Q ss_pred ccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEE-EecCCCCCccc----
Q 010538 319 RQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCT-IYGTYTSEVSY---- 393 (508)
Q Consensus 319 ~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~-~~~~~~~~~~~---- 393 (508)
....++++....+.+...++. ++.+.++..+++..+.+.|++.+ .++ +.-|.-. ..+
T Consensus 222 ------~~~g~~~~~~~a~l~~r~l~t-----l~~R~~~~~~na~~la~~L~~~p------~v~~v~yp~l~-~~p~~~~ 283 (366)
T PRK07582 222 ------LLAGAIPGPFEAWLAHRSLGT-----LGLRFARQCANALAVAELLAGHP------AVRGVRYPGLP-GDPAHEV 283 (366)
T ss_pred ------HHhCCCCCHHHHHHHHhcccc-----HHHHHHHHHHHHHHHHHHHHhCC------CccEEECCCCC-CCccHHH
Confidence 111223333333333333332 45555777788888888888874 443 3322211 000
Q ss_pred -----CCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeec---cCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCcc
Q 010538 394 -----HDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLR---TGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDND 465 (508)
Q Consensus 394 -----~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~---~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 465 (508)
...+++++|.+++ . ..+.+.++..++... -|...+.... + ..++.
T Consensus 284 ~~~~~~~~gg~~s~~~~~--~-----~~~~~~~~~l~~~~~~~s~G~~~sl~~~---------~--~~~~~--------- 336 (366)
T PRK07582 284 AARQMRRFGGLVSFELAD--A-----AAAERFVAASRLVVAATSFGGVHTSADR---------R--ARWGD--------- 336 (366)
T ss_pred HHhhCCCCcceEEEEeCC--H-----HHHHHHHHhCCcceecccCCCccchhhh---------H--HHcCC---------
Confidence 0148899999963 1 236677777776643 2211111100 0 01110
Q ss_pred ccCCCCCceEEEecCCCCCHHHHHHHHHhhhh
Q 010538 466 IIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFD 497 (508)
Q Consensus 466 ~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~ 497 (508)
+..++.||+|+|+.+.++.++.|.++|..
T Consensus 337 ---~~~~~liR~svGlE~~~dli~dl~~al~~ 365 (366)
T PRK07582 337 ---AVPEGFVRLSCGIEDTDDLVADLERALDA 365 (366)
T ss_pred ---CCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 12368999999999999999999888764
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-20 Score=194.68 Aligned_cols=168 Identities=17% Similarity=0.138 Sum_probs=134.1
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHH-HHHHhcCCeEEEEccC
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIR-EYALSQGAAAFAIDVE 161 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~-~~~~~~G~~v~~v~~~ 161 (508)
....+++++.+|+++|++ .+++++|+++|+.+++.++ .++|++||++...|++..... ..+...|++++.++.+
T Consensus 60 ~p~~~~le~~la~l~g~~----~~v~~ssG~~Ai~~al~al-~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~ 134 (390)
T PRK08133 60 NPTVTMFQERLAALEGAE----ACVATASGMAAILAVVMAL-LQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLT 134 (390)
T ss_pred ChHHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECCC
Confidence 345788999999999985 3678899999999999888 688999999998898776644 4566789999999864
Q ss_pred CccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCC
Q 010538 162 EAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK 241 (508)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~ 241 (508)
|+++++ +++ +++|++|++++++||+|.+.|+++|.++|++
T Consensus 135 --------------------d~~~l~--~~i------~~~tklV~ie~p~NptG~v~dl~~I~~la~~------------ 174 (390)
T PRK08133 135 --------------------DLDAWR--AAV------RPNTKLFFLETPSNPLTELADIAALAEIAHA------------ 174 (390)
T ss_pred --------------------CHHHHH--Hhc------CcCCeEEEEECCCCCCCCcCCHHHHHHHHHH------------
Confidence 256667 444 5689999999999999999999999999998
Q ss_pred CCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--c-eEEEEechhHhhhc
Q 010538 242 GRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--L-GALIMRNDAAKLLK 297 (508)
Q Consensus 242 ~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~-G~l~~~~~~~~~l~ 297 (508)
+|+++++|++++.+....++ +.++|+++.|+||+++ +.| + |+++.+++.++++.
T Consensus 175 ~gi~livD~t~~~~~~~~pl-~~g~Divv~S~sK~~~-g~g~~~GG~vv~~~~~~~~~~ 231 (390)
T PRK08133 175 AGALLVVDNCFCTPALQQPL-KLGADVVIHSATKYLD-GQGRVLGGAVVGSKELMEEVF 231 (390)
T ss_pred cCCEEEEECCCcccccCCch-hhCCcEEEeecceeec-CCcceEeEEEEcCHHHHHHHH
Confidence 99999999998765432222 4478999999999999 545 4 66666766654443
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-20 Score=210.20 Aligned_cols=343 Identities=11% Similarity=0.051 Sum_probs=224.6
Q ss_pred CCCeeeeCCCCCCC-CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCC-CceEEEcCChHHHH
Q 010538 39 NGTVYLDHAGATLY-SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMK-DYKCIFTSGATAAL 116 (508)
Q Consensus 39 ~~~iyld~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~-~~~i~~t~g~t~al 116 (508)
.+.+.|+.+-...+ |+.+.+++.+.+. .. +. ..+ ..+..+++++++++.+|++.+ +.+|++|+|+++++
T Consensus 697 ~~vI~LsinE~d~ppPp~V~eAi~eal~-~~--~~----s~g--~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL 767 (1082)
T PLN02672 697 SSLIHMDVDESFLPVPSAVKASIFESFV-RQ--NI----SES--ETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALF 767 (1082)
T ss_pred CCEEEEeCCCCCCCCCHHHHHHHHHHHh-hc--CC----CCC--ChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHH
Confidence 46799998876654 4445555544332 11 11 111 234567888999998888543 11799999999999
Q ss_pred HHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCC
Q 010538 117 KLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERD 196 (508)
Q Consensus 117 ~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~ 196 (508)
..++.++ .++|+.|+++...|+.+... ++..|++++.+|++.+..+ .+|+++++ +++.+
T Consensus 768 ~lll~aL-l~pGD~VLVp~PtY~~Y~~~---a~~~Ga~vv~Vpl~~e~gf-------------~lD~d~Le--~al~~-- 826 (1082)
T PLN02672 768 NKLVLCC-VQEGGTLCFPAGSNGTYVSA---AKFLKANFRRIPTKSSDGF-------------KLTAKTLA--STLET-- 826 (1082)
T ss_pred HHHHHHH-cCCCCEEEEeCCChHHHHHH---HHHcCCEEEEEecccccCC-------------CCCHHHHH--HHhcc--
Confidence 9999998 57899999998666666554 4456999999998643222 22677888 55521
Q ss_pred CCCCCceEEEEeCCC-CCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCC--CCCCC----CC-
Q 010538 197 PAGDAYNLFAFPSEC-NFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQ--PPDLS----KY- 264 (508)
Q Consensus 197 ~~~~~t~lv~~~~~~-n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~--~~d~~----~~- 264 (508)
.+.+++++++++ ||||.+++.+++.++++ +|+++|++||+|.+++. +.. +.++. ..
T Consensus 827 ---~~~~~I~L~nPnhNPTG~v~S~eeLe~Lle---------la~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~ 894 (1082)
T PLN02672 827 ---VKKPWVYISGPTINPTGLLYSNSEIEEILS---------VCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLK 894 (1082)
T ss_pred ---CCCCEEEEECcCCCCcCccCCHHHHHHHHH---------HHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhc
Confidence 133577788886 99999999998888877 67779999999999862 211 11111 11
Q ss_pred -----CCcEEEEeccccccCCCc--ceEEEEech-hHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHH
Q 010538 265 -----PVDFVVMSFYKIFGYPTG--LGALIMRND-AAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSI 336 (508)
Q Consensus 265 -----~~D~~~~S~~K~~g~P~G--~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~ 336 (508)
..-+++.|++|.++ .+| +||++++++ +++.+.... . ...+.....
T Consensus 895 ~~sks~nVIvL~SfSKkf~-lpGLRIGylIap~~eLi~~l~~~~-~-------------------------~s~~~~~~q 947 (1082)
T PLN02672 895 SSNPSFAVALLGGLSTELL-SGGHEFGFLALNDSVLIDAFHSAP-G-------------------------LSRPHSTLK 947 (1082)
T ss_pred cccCCceEEEEeCcHHhhc-cHHHHheeEEeCCHHHHHHHHHhh-h-------------------------hcCCCcHHH
Confidence 12367789999888 557 899999765 666554320 0 011111223
Q ss_pred HHHHHHHHHHHh------cChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCC---
Q 010538 337 ASIRHGFNLINS------LTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRP--- 407 (508)
Q Consensus 337 ~~l~~al~~~~~------~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--- 407 (508)
+++.+++.++.. ..+.+.++.+.+.++++.+.|++. ++.+..|.+ +.++|+.+...
T Consensus 948 ~Aaaaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~~-------Gi~v~~PeG--------GFfLwl~l~~~l~~ 1012 (1082)
T PLN02672 948 YTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKETLEAC-------GWDVLEPQG--------GISMVAKPSAYLGK 1012 (1082)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCeEecCCc--------EEEEEEEccccccc
Confidence 333333332210 125566777889999999999886 576665543 56666655311
Q ss_pred ----C------CCccCHHHHHHHHh-hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEE
Q 010538 408 ----D------GSWFGYREVEKLAS-LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIR 476 (508)
Q Consensus 408 ----~------~~~~~~~~l~~~L~-~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iR 476 (508)
+ +...+..++.+.|. +.||.+.+|..|. .++++|
T Consensus 1013 ~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG-----------------------------------~~g~~R 1057 (1082)
T PLN02672 1013 TVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTG-----------------------------------IPGYCR 1057 (1082)
T ss_pred cccccccccccccCCCHHHHHHHHHHcCCEEEecCcccC-----------------------------------CCCeEE
Confidence 0 00234456776665 5699999986431 157899
Q ss_pred EecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 477 VSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 477 is~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
|+++. +.+++++.++.|++|.+.+
T Consensus 1058 Isfa~--~~e~LeeALerL~kf~~~~ 1081 (1082)
T PLN02672 1058 FSFAL--EDSEFDRALKAIARFKELV 1081 (1082)
T ss_pred EEecC--CHHHHHHHHHHHHHHHHhh
Confidence 99994 7889999999999887654
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.3e-20 Score=190.53 Aligned_cols=338 Identities=16% Similarity=0.117 Sum_probs=210.1
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC-c
Q 010538 85 IVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE-A 163 (508)
Q Consensus 85 ~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~-~ 163 (508)
...++++.+++++|.+. .++++|+|+|+.+++.++..++|++|+++...|+++.. .+...|++++.++++. +
T Consensus 30 ~~~~le~~la~~~g~~~----~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~~~~~~~---~~~~~G~~~~~~~~~~~~ 102 (380)
T TIGR03588 30 TVPAFEEALAEYVGAKY----AVAFNSATSALHIACLALGVGPGDRVWTTPITFVATAN---CALYCGAKVDFVDIDPDT 102 (380)
T ss_pred hHHHHHHHHHHHHCCCe----EEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHH---HHHHcCCEEEEEecCCCc
Confidence 36778999999999953 34456789999999999877889999999987776643 3455799999999864 3
Q ss_pred cCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCC
Q 010538 164 VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGR 243 (508)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g 243 (508)
..+ |+++++ +++.+. ..++|++|++++ ++|...|+++|.++|++ +|
T Consensus 103 ~~~---------------d~~~l~--~~i~~~--~~~~t~~v~~~~---~~G~~~~~~~i~~l~~~------------~~ 148 (380)
T TIGR03588 103 GNI---------------DEDALE--KKLAAA--KGKLPKAIVPVD---FAGKSVDMQAIAALAKK------------HG 148 (380)
T ss_pred CCc---------------CHHHHH--HHhhcc--cCCCceEEEEeC---CCCccCCHHHHHHHHHH------------cC
Confidence 334 678888 665321 115788888654 58999999999999998 99
Q ss_pred eEEEEeccccCCCCCCCCCCCCC----cEEEEecc--ccccCCCcceEEEEe-chhHhhhccccccCceEEecccchhhh
Q 010538 244 WMVLIDAAKGCVTQPPDLSKYPV----DFVVMSFY--KIFGYPTGLGALIMR-NDAAKLLKNTYFSGGTVAASIADIDFV 316 (508)
Q Consensus 244 ~~vivD~a~~~g~~~~d~~~~~~----D~~~~S~~--K~~g~P~G~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~ 316 (508)
++||+|++|++|.. ++....+. |+.++|+| |+++.+.| |+++.+ +++.+++++....+.... ...+.
T Consensus 149 ~~lI~D~a~a~g~~-~~~~~~g~~~~~d~~~~S~~~~K~~~~~~G-G~v~~~~~~~~~~~~~~~~~g~~~~----~~~~~ 222 (380)
T TIGR03588 149 LKIIEDASHALGAE-YGGKPVGNCRYADATVFSFHPVKIITTAEG-GAVTTNDEELAERMRLLRSHGITKD----PLLFE 222 (380)
T ss_pred CEEEEECCCcccCc-cCCEeCCCccccceEEEecCCCCcccccCc-eEEEECCHHHHHHHHHHHHCCCCCC----ccccc
Confidence 99999999999876 56555666 99999998 88874544 666654 455555554322221100 00000
Q ss_pred hhccCccccccCCCC--ChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccC
Q 010538 317 KRRQGVEELFEDGTA--SFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYH 394 (508)
Q Consensus 317 ~~~~~~~~~~~~gt~--~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~ 394 (508)
.+ ......++.++. |. .+-.+.+++...+-..++.+.++-+++++++.+.|.+++ +++++.++.. .
T Consensus 223 ~~-~~~~~~~~~~~~g~n~-~m~~l~aa~g~~qL~~l~~~~~~r~~~~~~~~~~L~~~~------~~~~~~~~~~----~ 290 (380)
T TIGR03588 223 KQ-DEGPWYYEQQELGFNY-RMTDIQAALGLSQLKKLDRFVAKRREIAARYDRLLKDLP------YFTPLTIPLG----S 290 (380)
T ss_pred cc-ccCcceeeeecccccc-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------CccCCCCCCC----C
Confidence 00 001111221211 11 111122222211111267888888999999999998873 5655443211 0
Q ss_pred CCC-ceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCC--ChhhhhhhhhcCCccCCCccccCCCC
Q 010538 395 DTG-SMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGL--SHSDLLSNIEAGHVCWDDNDIIHGKP 471 (508)
Q Consensus 395 ~~~-~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~ 471 (508)
... .+..+.+...+ ..+..++.+.|.++||.++....+... ++.+.- +...+.. -....
T Consensus 291 ~~~~~~~~i~~~~~~--~~~r~~l~~~L~~~gI~~~~~~~~~~~--~~~~~~~~~~~~~p~--------------a~~~~ 352 (380)
T TIGR03588 291 KSAWHLYPILLDQEF--GCTRKEVFEALRAAGIGVQVHYIPVHL--QPYYRQGFGDGDLPS--------------AENFY 352 (380)
T ss_pred EeEEEEEEEEECCcC--CCCHHHHHHHHHHCCCCcccCCccccc--ChhhhccCCcCCCcH--------------HHHHH
Confidence 011 22233333211 134567999999999998865432111 011000 0000000 00112
Q ss_pred CceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 472 TGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 472 ~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
...+++.+|...|.+||+++++.+++++
T Consensus 353 ~~~l~lP~~~~l~~~dv~~i~~~l~~~~ 380 (380)
T TIGR03588 353 LAEISLPLHPALTLEQQQRVVETLRKVL 380 (380)
T ss_pred hceEEcCCCCCCCHHHHHHHHHHHHHhC
Confidence 4789999999999999999999998764
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.1e-21 Score=194.45 Aligned_cols=323 Identities=12% Similarity=0.048 Sum_probs=200.9
Q ss_pred eeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhh
Q 010538 43 YLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEA 122 (508)
Q Consensus 43 yld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~ 122 (508)
-|..+..+.++|.+.+++.+ .... ...|. ......++++.+++++|.++. ++++|+++++.+++.+
T Consensus 3 ~~~~~~~~~p~~~~~~a~~~-~~~~-----~~~Y~----~~~~~~~L~~~la~~~g~~~~----~v~~~g~~a~~~~l~~ 68 (333)
T PRK10534 3 DLRSDTVTRPSRAMLEAMMA-APVG-----DDVYG----DDPTVNALQDYAAELSGKEAA----LFLPTGTQANLVALLS 68 (333)
T ss_pred ccccccCCCCCHHHHHHHHh-ccCC-----CcccC----CCHHHHHHHHHHHHHhCCCeE----EEeCchHHHHHHHHHH
Confidence 34445555578888888644 2111 11221 133467889999999998754 5777778787777777
Q ss_pred cCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCc
Q 010538 123 FPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAY 202 (508)
Q Consensus 123 l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t 202 (508)
+ ..+|++|+++...|.............+++++.++.+.+..+ |+++++ +++.++.....++
T Consensus 69 ~-~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------d~~~l~--~~i~~~~~~~~~~ 130 (333)
T PRK10534 69 H-CERGEEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAAADGTL---------------PLDKVA--AKIKPDDIHFART 130 (333)
T ss_pred h-cCCCCeeEEechhhhhHhcCCchHHhcCceEEeecCCCCCCC---------------CHHHHH--HhhcccCcCcccc
Confidence 6 578888887765554322111011112367777777654444 678888 6553211111268
Q ss_pred eEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC---CCCCC--CCCCcEEEEeccccc
Q 010538 203 NLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ---PPDLS--KYPVDFVVMSFYKIF 277 (508)
Q Consensus 203 ~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~---~~d~~--~~~~D~~~~S~~K~~ 277 (508)
++|+++++ +||.++|.++|.++++ +|+++++++++|+++.++.. ..... ....|.++.|++|.|
T Consensus 131 ~lv~l~np--~~G~v~~~~~l~~i~~---------~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~ 199 (333)
T PRK10534 131 RLLSLENT--HNGKVLPREYLKQAWE---------FTRERNLALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGL 199 (333)
T ss_pred eEEEEecC--CCCeecCHHHHHHHHH---------HHHHcCCeEEeeHHHHHHHHHHcCCCHHHHHhcCCEEEEEeEcCC
Confidence 99999864 4699999998887665 45558999999998765321 11111 012466667999999
Q ss_pred cCCCcce-EEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHH
Q 010538 278 GYPTGLG-ALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICR 356 (508)
Q Consensus 278 g~P~G~G-~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~ 356 (508)
+.+ +| +++.++++++.++.....+ .+..+..++ ++.+++..+.. ..+..+
T Consensus 200 ~~~--~G~~~~~~~~~i~~~~~~~~~~------------------------~~~~~~~~~-~~a~~~~~l~~--~~~~~~ 250 (333)
T PRK10534 200 GTP--VGSLLVGNRDYIKRARRWRKMT------------------------GGGMRQAGI-LAAAGLYALKH--NVARLQ 250 (333)
T ss_pred CCc--ccceEEcCHHHHHHHHHHHHHh------------------------CCchhhHHH-HHHHHHHHHHh--hHHHHH
Confidence 844 57 6777888877665432110 011111111 11112222222 123334
Q ss_pred HHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCc
Q 010538 357 HIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNP 436 (508)
Q Consensus 357 ~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~ 436 (508)
+..+.++++.+.|+++ |++++.+ . ++++++++++. +...+.+.|.++||.++++
T Consensus 251 ~~~~~r~~l~~~L~~~-------g~~~~~~-~--------~nfv~~~~~~~-----~~~~~~~~l~~~gi~v~~~----- 304 (333)
T PRK10534 251 EDHDNAAWLAEQLREA-------GADVMRQ-D--------TNMLFVRVGEE-----QAAALGEYMRERNVLINAS----- 304 (333)
T ss_pred HHHHHHHHHHHHHHhC-------CCccCCC-C--------ceEEEEECCch-----hHHHHHHHHHHcCeeecCC-----
Confidence 4556678999999886 6776544 2 78999888632 1235788999999999764
Q ss_pred hHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 437 GACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 437 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
..+|++.+.-.|.++++++++.|++|+
T Consensus 305 ------------------------------------~~~rl~~~~r~t~e~~~~~~~~l~~~~ 331 (333)
T PRK10534 305 ------------------------------------PIVRLVTHLDVSREQLAEVVAHWRAFL 331 (333)
T ss_pred ------------------------------------ceEEEEEEeCCCHHHHHHHHHHHHHHh
Confidence 247888877779999999999998765
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.6e-20 Score=191.61 Aligned_cols=312 Identities=15% Similarity=0.056 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHH-HHHHhcCCeEEEEccCC
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIR-EYALSQGAAAFAIDVEE 162 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~-~~~~~~G~~v~~v~~~~ 162 (508)
.....+++++|++.|. + .+++++|+++|+.+++.++ .++|++|+++...|++..... ......|+++..++..
T Consensus 53 pt~~~Le~~lA~leg~--e--~ivvt~gg~~Ai~~~l~al-l~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~~- 126 (388)
T PRK08861 53 PNRGLLEQTLSELESG--K--GAVVTNCGTSALNLWVSAL-LGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQS- 126 (388)
T ss_pred chHHHHHHHHHHHhCC--C--eEEEECCHHHHHHHHHHHH-cCCCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECCC-
Confidence 3467788999999996 4 7999999999999999998 689999999987787654443 3344567888887631
Q ss_pred ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC
Q 010538 163 AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG 242 (508)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~ 242 (508)
|+++++ +++ .++|++|++++++||||.++|+++|.++|++ +
T Consensus 127 -------------------d~e~l~--~~i------~~~tklV~lesP~NPtG~v~dl~~I~~la~~------------~ 167 (388)
T PRK08861 127 -------------------DAAALD--AAL------AKKPKLILLETPSNPLVRVVDIAELCQKAKA------------V 167 (388)
T ss_pred -------------------CHHHHH--Hhc------CcCCeEEEEECCCCCCCcccCHHHHHHHHHH------------c
Confidence 356677 444 4688999999999999999999999999998 8
Q ss_pred CeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEech-hHhhhccccccCceEEecccchhhhhhc
Q 010538 243 RWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRND-AAKLLKNTYFSGGTVAASIADIDFVKRR 319 (508)
Q Consensus 243 g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~~~ 319 (508)
|+++++|.+++.+....++ +.++|+++.|+||+++||.+ .|+++.+++ +.++++..
T Consensus 168 gi~vIvDea~~~~~~~~pl-~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~-------------------- 226 (388)
T PRK08861 168 GALVAVDNTFLTPVLQKPL-ELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWW-------------------- 226 (388)
T ss_pred CCEEEEECCccccccCCCc-ccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHH--------------------
Confidence 9999999999876543333 35899999999999998865 466666543 33333211
Q ss_pred cCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceE-EEecCCCCCccc-----
Q 010538 320 QGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVC-TIYGTYTSEVSY----- 393 (508)
Q Consensus 320 ~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~-~~~~~~~~~~~~----- 393 (508)
+.......+....+.+...++. +..+.++..+.+..+.+.|++.+ .| +++-|.-+. .|
T Consensus 227 ----~~~~G~~~~p~~a~l~~rgl~T-----l~lR~~~~~~~a~~~a~~L~~~p------~v~~V~yP~l~~-~p~~~~~ 290 (388)
T PRK08861 227 ----GNCIGATGTPFDSYMTLRGIRT-----LGARMRVHEESAQQILAYLQTQS------LVGTIYHPSLPE-HPGHEIA 290 (388)
T ss_pred ----HhccCCCCChHHHHHHHhcCCC-----HHHHHHHHHHHHHHHHHHHHhCC------CeeEEECCCCCC-CchHHHH
Confidence 0111122333333333333332 45566777777778888887763 34 343332110 00
Q ss_pred ----CCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhh----hhhhcCCccCCCcc
Q 010538 394 ----HDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLL----SNIEAGHVCWDDND 465 (508)
Q Consensus 394 ----~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~----~~~~~~~~~~~~~~ 465 (508)
..-+++++|.+++. .+. ...+...|+--.+.++.|...+.- .+++. ..|+.+. +.+|
T Consensus 291 ~~~~~g~gg~~sf~~~~~-~~~--~~~f~~~l~l~~~~~s~G~~~sl~-~~p~~-~~h~~~~~~~~~~~g---------- 355 (388)
T PRK08861 291 KKQQSGFGSMLSFEFAGS-FEQ--LKVFVKALALFSLAESLGGVESLI-CHPAS-MTHRAMGEEALAEAG---------- 355 (388)
T ss_pred HHhCCCCCceEEEEeCCC-HHH--HHHHHhcCCcceEccCCCCCccee-eCCCc-ccccccCHHHHHhcC----------
Confidence 01378999999641 111 122444444444455555321110 00000 0111111 1232
Q ss_pred ccCCCCCceEEEecCCCCCHHHHHHHHHhhh
Q 010538 466 IIHGKPTGAIRVSFGYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 466 ~~~~~~~~~iRis~~~~~t~eev~~l~~~~~ 496 (508)
..++.||+|++.-+-++=++.+.+++.
T Consensus 356 ----i~~~liRlsvGlE~~~dli~Dl~~al~ 382 (388)
T PRK08861 356 ----VSQQLLRLSVGLEDAQDLIADLDQAFA 382 (388)
T ss_pred ----CCCCeEEEEeCcCCHHHHHHHHHHHHH
Confidence 247899999998554444444444443
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-20 Score=192.25 Aligned_cols=247 Identities=14% Similarity=0.092 Sum_probs=168.6
Q ss_pred hhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEeccccc-chHHHHHHHHhcCCeEE
Q 010538 78 ISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHN-SVLGIREYALSQGAAAF 156 (508)
Q Consensus 78 ~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~-s~~~~~~~~~~~G~~v~ 156 (508)
.+.......+++++.+|+++|++.+ +++++| ++|+..++.++ .++|++|+++...++ ++..+...++..|+++.
T Consensus 39 y~r~~~p~~~~L~~~lA~l~g~~~~---v~~~sG-~~ai~~~l~al-~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~ 113 (376)
T PRK06460 39 YSREANPTVLELTKKIVELENAEMG---VAFSSG-MGAISTTALAL-LKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVD 113 (376)
T ss_pred eeCCCCccHHHHHHHHHHHhCCCcE---EEeCCH-HHHHHHHHHHH-hCCCCEEEEecCCcCcHHHHHHHHHHhhCcEEE
Confidence 3444556678899999999999654 676555 68999999988 688999998876664 45555566777899999
Q ss_pred EEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCcccccc
Q 010538 157 AIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEI 236 (508)
Q Consensus 157 ~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~ 236 (508)
.++.+.. +.++ +. ..++|++|++++++||||.+.|+++|.++|++
T Consensus 114 ~~~~~~~--------------------~~l~--~~------~~~~tklV~l~sp~NPtG~v~d~~~I~~la~~------- 158 (376)
T PRK06460 114 ASNPGSD--------------------NIIE--KA------KSKRYDVVFVENITNPLLRVVDITELSKVCKE------- 158 (376)
T ss_pred EECCCCH--------------------HHHH--Hh------cCCCceEEEEECCCCCCCcccCHHHHHHHHHH-------
Confidence 8876431 1123 21 24678999999999999999999999999997
Q ss_pred CCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchh
Q 010538 237 SPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADID 314 (508)
Q Consensus 237 ~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~ 314 (508)
+|+++++|++++.+.....+ ..++|+++.|+||+++|+.+ .|+++.++++++.+......
T Consensus 159 -----~g~~vivDea~~~~~~~~~l-~~~~divv~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~~~~~------------ 220 (376)
T PRK06460 159 -----NGSILIVDATFSTPINQKPL-ELGADIVVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQMRRT------------ 220 (376)
T ss_pred -----cCCEEEEECCcCccccCChh-hcCCCEEEeecceeccCCCCceEEEEecCHHHHHHHHHHHHh------------
Confidence 89999999999865322222 34689999999999985643 68888888877665432110
Q ss_pred hhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceE-EEecCCCCCccc
Q 010538 315 FVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVC-TIYGTYTSEVSY 393 (508)
Q Consensus 315 ~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~-~~~~~~~~~~~~ 393 (508)
+ ..+.+....+.+...+++ ++.+.+++.+.++++.+.|++.+ .+ +++-|.-. ..+
T Consensus 221 -----------~-g~~~~~~~a~~~l~~~~~-----l~~r~~~~~~n~~~l~~~L~~~p------~v~~v~yp~l~-~~p 276 (376)
T PRK06460 221 -----------L-GTSLDPHAAYLTLRGIKT-----LKIRMDVINRNAEQIAEFLEGHP------KVVKVYYPGLK-SHV 276 (376)
T ss_pred -----------c-CCCCCHHHHHHHHhchhh-----HHHHHHHHHHHHHHHHHHHHcCC------CccEEECCCCC-CCc
Confidence 1 111221112222223333 45667788889999999998763 33 33333100 000
Q ss_pred ---------CCCCceEEEEeeC
Q 010538 394 ---------HDTGSMVSFNLKR 406 (508)
Q Consensus 394 ---------~~~~~~v~~~~~~ 406 (508)
..-+++++|.+++
T Consensus 277 ~~~~~~~~~~g~gg~~s~~~~~ 298 (376)
T PRK06460 277 DYEIARRVLKGFGGVLSFEVNG 298 (376)
T ss_pred cHHHHHhhCCCCceEEEEEEcC
Confidence 1237899999964
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-20 Score=192.04 Aligned_cols=242 Identities=11% Similarity=0.047 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHH-HHHHhcCCeEEEEccCC
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIR-EYALSQGAAAFAIDVEE 162 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~-~~~~~~G~~v~~v~~~~ 162 (508)
.-.+.+.+.+|++-|.+. .++++|++.|+++++.++ +++|++||++...|.+..... ..+++.|+++..++..
T Consensus 62 Pt~~~le~~la~LEg~~~----a~~~~SGmaAi~~~~~~l-l~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~- 135 (395)
T PRK08114 62 LTHFSLQEAMCELEGGAG----CALYPCGAAAVANAILAF-VEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDPL- 135 (395)
T ss_pred hhHHHHHHHHHHHhCCCe----EEEEhHHHHHHHHHHHHH-cCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECCC-
Confidence 345667889999988764 466677999999999988 789999999988887665554 4567789999998752
Q ss_pred ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC
Q 010538 163 AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG 242 (508)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~ 242 (508)
|.++++ ++| +++|++|++.+++||+|.+.|+++|+++||+ +
T Consensus 136 -------------------d~~~l~--~~l------~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~------------~ 176 (395)
T PRK08114 136 -------------------IGADIA--KLI------QPNTKVVFLESPGSITMEVHDVPAIVAAVRS------------V 176 (395)
T ss_pred -------------------CHHHHH--Hhc------CCCceEEEEECCCCCCCEeecHHHHHHHHHH------------h
Confidence 355667 444 5679999999999999999999999999997 6
Q ss_pred --CeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCC--cceEEEEechhHhhhccccccCceEEecccchhhhhh
Q 010538 243 --RWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPT--GLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKR 318 (508)
Q Consensus 243 --g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~--G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~ 318 (508)
|++++||++++.|.. ++..++++|+++.|+||+++|+. +.|+++.+++..+.++...
T Consensus 177 g~g~~lvVDnT~a~p~~-~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~------------------ 237 (395)
T PRK08114 177 NPDAVIMIDNTWAAGVL-FKALDFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENS------------------ 237 (395)
T ss_pred CCCCEEEEECCCccccc-cCHHHcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHH------------------
Confidence 599999999999887 89999999999999999888785 4687777766544333110
Q ss_pred ccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceE-EEecCCCCCc------
Q 010538 319 RQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVC-TIYGTYTSEV------ 391 (508)
Q Consensus 319 ~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~-~~~~~~~~~~------ 391 (508)
....+..+....+.+...++ .+..+.++..+.+..+.+.|++.+ .+ +++-|.-..-
T Consensus 238 ------~~~G~~~~p~~a~l~~rgl~-----TL~lR~~~~~~na~~va~~L~~hp------~V~~V~yPgl~~~p~~~~~ 300 (395)
T PRK08114 238 ------YLMGQMVDADTAYMTSRGLR-----TLGVRLRQHEESSLKVAEWLAEHP------EVARVNHPALPGCKGHEFW 300 (395)
T ss_pred ------HhccCCCCHHHHHHHHcCCC-----cHHHHHHHHHHHHHHHHHHHHcCC------CEeEEECCCCCCCccHHHH
Confidence 01112223222222222332 245667777888888888888774 34 3444321100
Q ss_pred -c-cCCCCceEEEEeeC
Q 010538 392 -S-YHDTGSMVSFNLKR 406 (508)
Q Consensus 392 -~-~~~~~~~v~~~~~~ 406 (508)
. -..-+++++|.+++
T Consensus 301 ~~~~~g~gg~~sf~l~~ 317 (395)
T PRK08114 301 KRDFTGSSGLFSFVLKK 317 (395)
T ss_pred HhhCCCCceEEEEEecC
Confidence 0 00137899999964
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-20 Score=188.80 Aligned_cols=272 Identities=14% Similarity=0.074 Sum_probs=188.4
Q ss_pred HHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCc
Q 010538 87 RAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDN 166 (508)
Q Consensus 87 ~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~ 166 (508)
..+|+.++++++. + +|++|+|+++++.+++. ..+|++|++....|+ .....++..|++++.+|.+.
T Consensus 52 ~~Lr~~ia~~~~~--~--~I~it~Gs~~al~~~~~---~~~gd~v~v~~P~y~---~~~~~~~~~g~~~~~v~~~~---- 117 (330)
T PRK05664 52 DGLEAAARAYYGA--P--QLLPVAGSQAAIQALPR---LRAPGRVGVLSPCYA---EHAHAWRRAGHQVRELDEAE---- 117 (330)
T ss_pred HHHHHHHHHHhCC--C--CEEECcCHHHHHHHHHH---ccCCCEEEEcCCChH---HHHHHHHHcCCeEEEechhh----
Confidence 4568999999985 4 79999999999998863 357899998875544 44455566799999998642
Q ss_pred cccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEE
Q 010538 167 DGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMV 246 (508)
Q Consensus 167 ~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~v 246 (508)
++ +++ ++++++++++++||||.+++.+++.++++ +|+++|++|
T Consensus 118 -------------------~~--~~~-------~~~~~v~l~nP~NPTG~~~s~~~l~~l~~---------~~~~~~~~i 160 (330)
T PRK05664 118 -------------------VE--AAL-------DSLDVLVVVNPNNPTGRRFDPARLLAWHA---------RLAARGGWL 160 (330)
T ss_pred -------------------Hh--hhh-------cCCCEEEEeCCcCCCCCccCHHHHHHHHH---------HHHhcCCEE
Confidence 12 221 24678888999999999999998888875 345589999
Q ss_pred EEeccccCCCCCCCCCCC---CCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccC
Q 010538 247 LIDAAKGCVTQPPDLSKY---PVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQG 321 (508)
Q Consensus 247 ivD~a~~~g~~~~d~~~~---~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~ 321 (508)
|+|+++........+... +.-+++.|++|.|| .+| +||+++++++++.+......
T Consensus 161 I~DE~y~~~~~~~s~~~~~~~~~vi~~~SfSK~~g-l~GlRiG~~v~~~~l~~~~~~~~~~------------------- 220 (330)
T PRK05664 161 VVDEAFMDNTPQHSLAACAHRPGLIVLRSFGKFFG-LAGARLGFVLAEPALLRALAELLGP------------------- 220 (330)
T ss_pred EEECCcccCCCcccccccccCCCEEEEeecccccc-CCCcceEEEEeCHHHHHHHHHhcCC-------------------
Confidence 999998643221222222 22388999999998 447 89999998887766543110
Q ss_pred ccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEE
Q 010538 322 VEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVS 401 (508)
Q Consensus 322 ~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 401 (508)
.+.+.....++..+++... ..+..++++.+.++++.+.|++. +++ +.+. ...+++
T Consensus 221 -------~~~~~~~~~~~~~~L~~~~--~~~~~~~~~~~~r~~l~~~L~~~-------~~~---~~~~------~~~f~~ 275 (330)
T PRK05664 221 -------WTVSGPTRWLAQAALADTP--WQRRQRERLLAASQRLAALLRRH-------GLT---PAGG------CALFQW 275 (330)
T ss_pred -------CCCCHHHHHHHHHHHhChH--HHHHHHHHHHHHHHHHHHHHHHC-------CCc---ccCC------cceEEE
Confidence 1122333344444444211 14567788888899999999876 342 2221 136677
Q ss_pred EEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCC
Q 010538 402 FNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGY 481 (508)
Q Consensus 402 ~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~ 481 (508)
+++++ ..++.+.|.++||.|+. |. ..+++|||++.
T Consensus 276 ~~~~~-------~~~~~~~l~~~gi~v~~---f~-----------------------------------~~~~iRis~~~ 310 (330)
T PRK05664 276 VRTED-------AAALHEFLARRGILTRL---FE-----------------------------------QPASLRFGLPA 310 (330)
T ss_pred EecCC-------HHHHHHHHHHCCeEEEE---CC-----------------------------------CCCeEEEECCC
Confidence 76532 23578889999999974 21 14689999995
Q ss_pred CCCHHHHHHHHHhhhhhhhh
Q 010538 482 MSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 482 ~~t~eev~~l~~~~~~~~~~ 501 (508)
+.++++++.++|+.+.+.
T Consensus 311 --~~~~~~~l~~al~~~~~~ 328 (330)
T PRK05664 311 --DEADWARLDQALLAYRKE 328 (330)
T ss_pred --CHHHHHHHHHHHHHHHhh
Confidence 788999999999887653
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.7e-20 Score=191.20 Aligned_cols=337 Identities=15% Similarity=0.101 Sum_probs=218.5
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCcc
Q 010538 85 IVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAV 164 (508)
Q Consensus 85 ~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~ 164 (508)
...++++.+|+++|++ .+++++|+|+|+.+++.++..++|++||+++..|+++..++ ...|++++.++++.+.
T Consensus 34 ~~~~le~~la~~~g~~----~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~---~~~G~~~v~vd~~~~~ 106 (379)
T PRK11658 34 KNQALEQAFCQLTGNQ----HAIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMI---VLLGATPVMVDVDRDT 106 (379)
T ss_pred hHHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHH---HHcCCEEEEEecCCCc
Confidence 4688899999999985 36788999999999999986788999999998888775544 4469999999987533
Q ss_pred -CccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCC
Q 010538 165 -DNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGR 243 (508)
Q Consensus 165 -~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g 243 (508)
.+ |+++++ +++ +++|++|+.+ +++|...|+++|.++|++ +|
T Consensus 107 ~~~---------------d~~~l~--~~i------~~~tkav~~~---~~~G~~~d~~~i~~~a~~------------~g 148 (379)
T PRK11658 107 LMV---------------TPEAIE--AAI------TPRTKAIIPV---HYAGAPADLDAIRAIGER------------YG 148 (379)
T ss_pred CCc---------------CHHHHH--Hhc------ccCCeEEEEe---CCCCCcCCHHHHHHHHHH------------cC
Confidence 34 688888 554 5678888744 459999999999999998 99
Q ss_pred eEEEEeccccCCCCCC--CCCCCCCcEEEEeccccccCCCcceEEEEe-chhHhhhccccccCceEEecccchhhhhhcc
Q 010538 244 WMVLIDAAKGCVTQPP--DLSKYPVDFVVMSFYKIFGYPTGLGALIMR-NDAAKLLKNTYFSGGTVAASIADIDFVKRRQ 320 (508)
Q Consensus 244 ~~vivD~a~~~g~~~~--d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~ 320 (508)
+++++|++|++|.... .+...+.+++.++.+|.+.++.| |+++.+ +++.+++++....|..... .. .+.....
T Consensus 149 i~vi~D~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l~~g~G-G~v~~~~~~~~~~~~~~~~~G~~~~~-~~--~~~~~~~ 224 (379)
T PRK11658 149 IPVIEDAAHAVGTYYKGRHIGARGTAIFSFHAIKNITCAEG-GLVVTDDDELADRLRSLKFHGLGVDA-FD--RQTQGRA 224 (379)
T ss_pred CeEEEECCCccCCeECCeecCCCCCEEEeCCCCCcCcccCc-eEEEECCHHHHHHHHHHHHcCCCcch-hh--hhcccCC
Confidence 9999999999887654 35556677778888886654443 666654 5666666654322211100 00 0000000
Q ss_pred CccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCC-ce
Q 010538 321 GVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTG-SM 399 (508)
Q Consensus 321 ~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 399 (508)
.....+..|+.. .+..+.+|+.+.+..+++++.++.+++++++.+.|++++ ...+..+... .+.. .+
T Consensus 225 ~~~~~~~~G~n~--~~~~l~AAl~~~ql~~l~~~~~~r~~~a~~~~~~L~~~~------~~~~~~~~~~----~~~~~~~ 292 (379)
T PRK11658 225 PQAEVLTPGYKY--NLADINAAIALVQLAKLEALNARRREIAARYLQALADLP------FQPLSLPAWP----HQHAWHL 292 (379)
T ss_pred Ccceeecccccc--CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------CccCcCCCCC----CceeEEE
Confidence 001112334311 134566677766666789999999999999999998762 2223222211 0112 44
Q ss_pred EEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCC--ChhhhhhhhhcCCccCCCccccCCCCCceEEE
Q 010538 400 VSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGL--SHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRV 477 (508)
Q Consensus 400 v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRi 477 (508)
..+.++.. ...++..++.+.|+++||.++.. |.+...++++.. +...+.. . .......+.+
T Consensus 293 ~~~~~~~~-~~~~~r~~~~~~L~~~gI~~~~~--~~~~~~~~~~~~~~~~~~~p~-~-------------~~~~~~~l~l 355 (379)
T PRK11658 293 FIIRVDEE-RCGISRDALMEALKERGIGTGLH--FRAAHTQKYYRERFPTLSLPN-T-------------EWNSERICSL 355 (379)
T ss_pred EEEEECCc-cccCCHHHHHHHHHHCCCCCccc--CcCcccChhhhccCCCCCChH-H-------------HHHHhCeEEc
Confidence 55565421 11134567899999999986643 322211111110 0000000 0 0112467888
Q ss_pred ecCCCCCHHHHHHHHHhhhhhh
Q 010538 478 SFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 478 s~~~~~t~eev~~l~~~~~~~~ 499 (508)
-+|..-|++|++++++.+++++
T Consensus 356 P~~~~l~~~~~~~i~~~i~~~~ 377 (379)
T PRK11658 356 PLFPDMTDADVDRVITALQQIA 377 (379)
T ss_pred cCCCCCCHHHHHHHHHHHHHHH
Confidence 8999999999999999999865
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-21 Score=195.65 Aligned_cols=231 Identities=18% Similarity=0.175 Sum_probs=174.9
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE 162 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~ 162 (508)
...+.++++.+|+++|++. .+++|+|+|+|+..++.++ .++|++|+++...|+++...+.. .|++++.++.+.
T Consensus 58 ~g~i~~~~~~~A~~~ga~~---~~~~~~Gst~a~~~~l~al-~~~gd~Vlv~~~~h~s~~~~~~~---~g~~~~~v~~~~ 130 (294)
T cd00615 58 TGPIKEAQELAARAFGAKH---TFFLVNGTSSSNKAVILAV-CGPGDKILIDRNCHKSVINGLVL---SGAVPVYLKPER 130 (294)
T ss_pred ChHHHHHHHHHHHHhCCCC---EEEEcCcHHHHHHHHHHHc-CCCCCEEEEeCCchHHHHHHHHH---CCCEEEEecCcc
Confidence 3458889999999999863 3666999999999999998 68899999999999988766543 589999887653
Q ss_pred ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC
Q 010538 163 AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG 242 (508)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~ 242 (508)
+.... .....|+++++ +++++ .+++++|+++++ |++|.+.|+++|.++|++ +
T Consensus 131 ~~~~~---------~~~~i~~~~l~--~~l~~----~~~~k~v~l~~p-~~~G~~~dl~~I~~~~~~------------~ 182 (294)
T cd00615 131 NPYYG---------IAGGIPPETFK--KALIE----HPDAKAAVITNP-TYYGICYNLRKIVEEAHH------------R 182 (294)
T ss_pred CcccC---------cCCCCCHHHHH--HHHHh----CCCceEEEEECC-CCCCEecCHHHHHHHHHh------------c
Confidence 22100 00011688888 66532 357899999986 789999999999999998 9
Q ss_pred CeEEEEeccccC-----CCCCCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhh
Q 010538 243 RWMVLIDAAKGC-----VTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVK 317 (508)
Q Consensus 243 g~~vivD~a~~~-----g~~~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~ 317 (508)
|++++||++|+. +..+.+....++|+++.|+||++++|++.|++.++++... .... .
T Consensus 183 g~~livDeA~~~~~~~~~~~~~~~~~~~~div~~S~hK~l~g~~~~~~l~~~~~~~~-~~~~----------------~- 244 (294)
T cd00615 183 GLPVLVDEAHGAHFRFHPILPSSAAMAGADIVVQSTHKTLPALTQGSMIHVKGDLVN-PDRV----------------N- 244 (294)
T ss_pred CCeEEEECcchhhhccCcccCcchhhcCCcEEEEchhcccchHhHHHHHHhCCCcCC-HHHH----------------H-
Confidence 999999999975 3345555566899999999999887776788777665311 0000 0
Q ss_pred hccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHh
Q 010538 318 RRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLL 370 (508)
Q Consensus 318 ~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~ 370 (508)
.....+..++|++..++++..+++++...|. +..+++.++.+++++.+.
T Consensus 245 ---~~~~~~~ttsps~~~~asl~~a~~~~~~~g~-~~~~~~~~~~~~~r~~l~ 293 (294)
T cd00615 245 ---EALNLHQSTSPSYLILASLDVARAMMALEGK-ELVEELIELALYARQEIN 293 (294)
T ss_pred ---HHHHHHCCCCcHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHh
Confidence 0133456788999999999999998876664 467788899999988875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.4e-20 Score=189.65 Aligned_cols=315 Identities=13% Similarity=0.060 Sum_probs=200.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHH-HHHHhcCCeEEEEccCC
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIR-EYALSQGAAAFAIDVEE 162 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~-~~~~~~G~~v~~v~~~~ 162 (508)
...+.+++++|++.|. + ++++++|+++|+.+++.++ .++|++|+++...|++..... ......|+++..++.
T Consensus 52 pt~~~L~~~lA~l~g~--~--~~i~~~sg~~Ai~~~l~~l-~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd~-- 124 (386)
T PRK08045 52 PTRDVVQRALAELEGG--A--GAVLTNTGMSAIHLVTTVF-LKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQ-- 124 (386)
T ss_pred ccHHHHHHHHHHHhCC--C--eEEEECCHHHHHHHHHHHH-cCCCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEEeCC--
Confidence 3467789999999995 3 5899999999999999988 688999999998888655443 344455667777642
Q ss_pred ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC
Q 010538 163 AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG 242 (508)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~ 242 (508)
. |+++++ +++ .++|++|++++++||||.++|+++|.++|++ +
T Consensus 125 ---~---------------d~e~l~--~~l------~~~tklV~l~sP~NPtG~v~di~~I~~ia~~------------~ 166 (386)
T PRK08045 125 ---G---------------DEQALR--AAL------AEKPKLVLVESPSNPLLRVVDIAKICHLARE------------A 166 (386)
T ss_pred ---C---------------CHHHHH--Hhc------ccCCeEEEEECCCCCCCEecCHHHHHHHHHH------------c
Confidence 2 466777 444 4678999999999999999999999999998 8
Q ss_pred CeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEe-chhHhhhccccccCceEEecccchhhhhhc
Q 010538 243 RWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMR-NDAAKLLKNTYFSGGTVAASIADIDFVKRR 319 (508)
Q Consensus 243 g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~ 319 (508)
|+++++|++++.+.....+ ..++|+++.|+||+++|+.+ .|+++.+ +++.+++...
T Consensus 167 g~~vivDeay~~~~~~~pl-~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~-------------------- 225 (386)
T PRK08045 167 GAVSVVDNTFLSPALQNPL-ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWW-------------------- 225 (386)
T ss_pred CCEEEEECCCCccccCCch-hhCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHH--------------------
Confidence 9999999999877544333 45899999999999987876 5777764 4444433211
Q ss_pred cCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceE-EEecCCCCC-----c--
Q 010538 320 QGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVC-TIYGTYTSE-----V-- 391 (508)
Q Consensus 320 ~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~-~~~~~~~~~-----~-- 391 (508)
.. ....+.+....+.+..+++. +..+.++..+.+..+.+.|++.+ .+ +++-|.-.. .
T Consensus 226 ---~~-~~g~~~~p~~~~l~~rgl~t-----l~~R~~~~~~na~~la~~L~~~p------~v~~V~yp~l~~~p~~~~~~ 290 (386)
T PRK08045 226 ---AN-NIGVTGGAFDSYLLLRGLRT-----LVPRMELAQRNAQAIVKYLQTQP------LVKKLYHPSLPENQGHEIAA 290 (386)
T ss_pred ---HH-hcCCCCCHHHHHHHHhhhcc-----HHHHHHHHHHHHHHHHHHHHcCC------CEeEEECCCCCCCcCHHHHH
Confidence 00 11122333333333334443 56677888888888888888763 44 333332110 0
Q ss_pred c-cCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhh----hhhhhcCCccCCCccc
Q 010538 392 S-YHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDL----LSNIEAGHVCWDDNDI 466 (508)
Q Consensus 392 ~-~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~----~~~~~~~~~~~~~~~~ 466 (508)
. ...-+++++|.+++. ... ...+...|+--.+.++-|...+.- .+++. ..++.+ .+.+|
T Consensus 291 ~~~~g~g~~~s~~~~~~-~~~--~~~f~~~l~~~~~~~s~G~~~sl~-~~~~~-~~~~~~~~~~~~~~g----------- 354 (386)
T PRK08045 291 RQQKGFGAMLSFELDGD-EQT--LRRFLGGLSLFTLAESLGGVESLI-SHAAT-MTHAGMAPEARAAAG----------- 354 (386)
T ss_pred HhCCCCCceEEEEecCc-HHH--HHHHHHhccceeEeccCCCCceeE-eCCCC-cccccCCHHHHHhcC-----------
Confidence 0 001278999999642 111 123444554444445544322110 00000 011111 11232
Q ss_pred cCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 467 IHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 467 ~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
..++.||+|++.-+-++=++.+.++|...
T Consensus 355 ---i~~~liR~svGlE~~~dl~~dl~~al~~~ 383 (386)
T PRK08045 355 ---ISETLLRISTGIEDGEDLIADLENGFRAA 383 (386)
T ss_pred ---CCCCeEEEEeCcCCHHHHHHHHHHHHHHh
Confidence 24789999999876666666666665543
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-19 Score=191.22 Aligned_cols=311 Identities=13% Similarity=0.043 Sum_probs=190.8
Q ss_pred HHHHHHHHHHc----C--CCCCCceEEEcCChHHHHHHHHhhcCC----CCCCeEEE-ecccccchHHHHHHHH-hcCCe
Q 010538 87 RAAREQVLDYF----N--ASMKDYKCIFTSGATAALKLVGEAFPW----SHQSSYMY-TMENHNSVLGIREYAL-SQGAA 154 (508)
Q Consensus 87 ~~~r~~la~~~----~--~~~~~~~i~~t~g~t~al~~~~~~l~~----~~g~~vl~-~~~~h~s~~~~~~~~~-~~G~~ 154 (508)
..+|+++|+++ | ++++ +|++|+|+++|+.+++.++.. .+|+.|++ ....||.+........ ..+..
T Consensus 77 ~~LR~aia~~~~~~~g~~v~~~--~I~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~ 154 (416)
T PRK09440 77 DELIEALAALLNERYGWNISPQ--NIALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYR 154 (416)
T ss_pred HHHHHHHHHHHHHHhCCCCChh--hEEEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceeecc
Confidence 44566666655 3 6777 899999999999999998843 25788888 5777777655332211 01122
Q ss_pred EEEEccCCc---cCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCc
Q 010538 155 AFAIDVEEA---VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPE 231 (508)
Q Consensus 155 v~~v~~~~~---~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~ 231 (508)
+..++++.+ ..+ |+++++ . .++++++++++++||||.+++.+++.++++
T Consensus 155 ~~~~~~~~~~~~~~~---------------d~~~l~--------~--~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~--- 206 (416)
T PRK09440 155 PNIELLPEGQFKYHV---------------DFEHLH--------I--DEDTGAICVSRPTNPTGNVLTDEELEKLDA--- 206 (416)
T ss_pred cccccccccccccCC---------------CHHHcc--------c--CCCceEEEEecCCCCCCccCCHHHHHHHHH---
Confidence 222333221 122 455554 1 346799999999999999999887777776
Q ss_pred cccccCCCCCCCeEEEEeccccCCCCCC---CCCC--CCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCc
Q 010538 232 RILEISPFSKGRWMVLIDAAKGCVTQPP---DLSK--YPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGG 304 (508)
Q Consensus 232 ~~~~~~~~~~~g~~vivD~a~~~g~~~~---d~~~--~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~ 304 (508)
+|++++++||+|++++.....+ +... .+.-+++.|++|+ + .+| +||+++++++++.+.....
T Consensus 207 ------~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~vI~~~SfSK~-~-~pGlRiG~~i~~~~l~~~~~~~~~--- 275 (416)
T PRK09440 207 ------LARQHNIPLLIDNAYGPPFPGIIFSEATPLWNPNIILCMSLSKL-G-LPGVRCGIVIADEEIIEALSNMNG--- 275 (416)
T ss_pred ------HHHHcCCcEEEeCCccccCCCcchhhcCccccCCeEEEeccccc-C-CCcceEEEEeCCHHHHHHHHHHHH---
Confidence 5666999999999996422111 1111 1234788999996 5 347 8999999888776554311
Q ss_pred eEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHH--HHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEE
Q 010538 305 TVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNL--INSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCT 382 (508)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~--~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~ 382 (508)
....+.+.....++..+++- +.+.-.+.+++.+++.++.+.+.|.+... ..++.
T Consensus 276 ---------------------~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l~---~~~~~ 331 (416)
T PRK09440 276 ---------------------IISLAPGRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLRRYLP---DEPCL 331 (416)
T ss_pred ---------------------HhccCCCcHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCeE
Confidence 11122333333333334331 00100122445555666666666654310 01355
Q ss_pred EecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCC
Q 010538 383 IYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWD 462 (508)
Q Consensus 383 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 462 (508)
+..|.+ +.++|+.++... ++..++.+.|.++||.+++|..|..+... +
T Consensus 332 ~~~p~g--------g~fiw~~~~~~~---~~~~~~~~~l~~~gV~v~pg~~F~~~~~~-------------------~-- 379 (416)
T PRK09440 332 IHKPEG--------AIFLWLWFKDLP---ITTEELYQRLKARGVLVVPGHYFFPGLDE-------------------D-- 379 (416)
T ss_pred EecCCC--------ceEEEEECCCCC---CCHHHHHHHHHHCCEEEechHhhCCCCcc-------------------c--
Confidence 554543 788999886521 23345778888999999998766432100 0
Q ss_pred CccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 463 DNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 463 ~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
.....+++|||++. +.++++.+++.|+++++-
T Consensus 380 -----~~~~~~~iRis~~~--~~~~l~~~i~~l~~~~~~ 411 (416)
T PRK09440 380 -----WPHAHQCIRMNYVQ--DDEEIEKGIAILAEEVEK 411 (416)
T ss_pred -----cCCcCceEEEEecC--CHHHHHHHHHHHHHHHHH
Confidence 00013689999984 789999999999987754
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-19 Score=188.13 Aligned_cols=213 Identities=15% Similarity=0.191 Sum_probs=157.1
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKL 118 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~ 118 (508)
.+.+|++|.+.+++++.+++++.+.+ .. +.+.......+. ....++.+++.+++++|++.. ++ ++|++.|+++
T Consensus 80 tg~v~~tNlg~s~l~~~vieAv~~~~-~~-y~~l~~~l~~g~-~g~r~~~le~~lA~l~gae~a---lv-v~sg~aAi~l 152 (454)
T TIGR00474 80 TGVVLHTNLGRAPLAEEAIEAVTDAA-RG-YSNLEYDLETGK-RGSRYSHVEGLLCELTGAEDA---LV-VNNNAAAVLL 152 (454)
T ss_pred CCcEEeccCCCCCCCHHHHHHHHHHH-hc-ccchhccccccc-cchHHHHHHHHHHHHhCCCcE---EE-ECCHHHHHHH
Confidence 56899999999999999999876543 33 333321111111 234578899999999999754 44 5667778988
Q ss_pred HHhhcCCCCCCeEEEecccccch---HHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCC
Q 010538 119 VGEAFPWSHQSSYMYTMENHNSV---LGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPER 195 (508)
Q Consensus 119 ~~~~l~~~~g~~vl~~~~~h~s~---~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~ 195 (508)
++.++ .+|++||+++.+|+.+ ......++..|+++++++.+.. . ++++++ +++
T Consensus 153 ~l~~l--~~GdeVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~~~--~---------------~l~dle--~aI--- 208 (454)
T TIGR00474 153 ALNTL--AKGKEVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTTNR--T---------------HLKDYE--DAI--- 208 (454)
T ss_pred HHHHh--CCcCEEEECCChhhhhcchhhHHHHHHHcCCEEEEeCCCCC--C---------------CHHHHH--Hhc---
Confidence 88664 7899999999887533 2223445678999999976432 2 367778 444
Q ss_pred CCCCCCceEEEEeCCCCCC--c--cccCHHHHHHHHcCCccccccCCCCCCCeEEEEecccc---------CCCCCC--C
Q 010538 196 DPAGDAYNLFAFPSECNFS--G--SRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKG---------CVTQPP--D 260 (508)
Q Consensus 196 ~~~~~~t~lv~~~~~~n~t--G--~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~---------~g~~~~--d 260 (508)
+++|++|++.|.+|++ | .+.|+++|.++||+ +|+++++|.+.+ .+..|. +
T Consensus 209 ---~~~T~lv~~~h~sN~~~~G~~~~~dl~~I~~la~~------------~g~~vivD~~sG~l~~~~~~gl~~~p~~~~ 273 (454)
T TIGR00474 209 ---TENTALLLKVHTSNYRIVGFTEEVSIAELVALGRE------------HGLPVMEDLGSGSLVDLSRYGLPDEPTVQE 273 (454)
T ss_pred ---CcCCEEEEEEccCcccccCCCCCCCHHHHHHHHHH------------cCCeEEEECCCcccccchhccCCCCccccc
Confidence 6789999999999985 6 58999999999998 999999998632 223333 4
Q ss_pred CCCCCCcEEEEeccccccCCCcceEEEEechhHhhhcc
Q 010538 261 LSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKN 298 (508)
Q Consensus 261 ~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~ 298 (508)
..++++|++++|+|||+|||. .|+++++++.+++++.
T Consensus 274 ~~~~GaDiv~fSg~K~LgGp~-~G~i~g~~~~i~~l~~ 310 (454)
T TIGR00474 274 VIAAGVDLVTFSGDKLLGGPQ-AGIIVGKKELIERLKK 310 (454)
T ss_pred HhHcCCCEEEecCccccCCCe-EEEEEECHHHHHhhhh
Confidence 456799999999999998786 6999999988776553
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-19 Score=187.82 Aligned_cols=311 Identities=11% Similarity=0.032 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEEccCCc
Q 010538 85 IVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDVEEA 163 (508)
Q Consensus 85 ~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~~~~ 163 (508)
....+++.+|++.|++ .+++++|+++|+.+++.++ .++|++||+++..|++...+.. .++..|+++..++...
T Consensus 51 t~~~lE~~lA~l~g~~----~~~~~~sG~~Ai~~al~al-l~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~~- 124 (377)
T TIGR01324 51 THFALQDAMCELEGGA----GCYLYPSGLAAVTNSILAF-VKAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDPLI- 124 (377)
T ss_pred cHHHHHHHHHHHhCCC----cEEEECcHHHHHHHHHHHh-cCCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECCCC-
Confidence 3567889999999975 4788999999999999998 7899999999877766554443 3566788888775421
Q ss_pred cCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCC
Q 010538 164 VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGR 243 (508)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g 243 (508)
.++++ +++ +++|++|++++++|++|.+.|+++|.++|++ +|
T Consensus 125 -------------------~e~l~--~~i------~~~tklV~lesp~Np~g~~~dl~~I~~la~~------------~g 165 (377)
T TIGR01324 125 -------------------GEDIA--TLI------QPNTKVLFLEAPSSITFEIQDIPAIAKAARN------------PG 165 (377)
T ss_pred -------------------HHHHH--Hhc------CCCceEEEEECCCCCCCcHHHHHHHHHHHHH------------cC
Confidence 24556 443 5689999999999999999999999999998 89
Q ss_pred eEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccC
Q 010538 244 WMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQG 321 (508)
Q Consensus 244 ~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~ 321 (508)
+++++|++|+.|... ...++++|+++.|++|+++|+.+ .|+++.+++..+++....
T Consensus 166 ~~livD~t~a~g~~~-~pl~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~~--------------------- 223 (377)
T TIGR01324 166 IVIMIDNTWAAGLLF-KPLEHGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLREHS--------------------- 223 (377)
T ss_pred CEEEEECCCcccccc-CccccCceEEEecCceeccCCCCceEEEEEeCHHHHHHHHHHH---------------------
Confidence 999999999988763 33456899999999999997765 577877777655443210
Q ss_pred ccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceE-EEecCCCCCccc-------
Q 010538 322 VEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVC-TIYGTYTSEVSY------- 393 (508)
Q Consensus 322 ~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~-~~~~~~~~~~~~------- 393 (508)
+....+.+....+.+..+++. +..+.++..+.+..+.+.|++.+ .+ +++-|.-.. .+
T Consensus 224 ---~~~G~~l~p~~a~~~~rgl~t-----l~~R~~~~~~~a~~la~~L~~~p------~v~~v~yp~l~~-~p~~~~~~~ 288 (377)
T TIGR01324 224 ---YLMGQMVDADDAYTTLRGLRT-----LGVRLKQHQESSLAIAKWLSEQP------EVARVLHPALPS-CPGHEFWKR 288 (377)
T ss_pred ---HHhCCCCCHHHHHHHHhhhhh-----HHHHHHHHHHHHHHHHHHHHhCC------CcCEEECCCCCC-CccHHHHHH
Confidence 011123344444444444443 33445666666667777777653 33 344332100 00
Q ss_pred --CCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHH-HhhcCCChhhhhhhhhcCCccCCCccccCCC
Q 010538 394 --HDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGAC-AKYLGLSHSDLLSNIEAGHVCWDDNDIIHGK 470 (508)
Q Consensus 394 --~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 470 (508)
...+++++|.+++.... ...++.+.|+..++.++-|...+.-.+ ++ -..++.. ...| .
T Consensus 289 ~~~~~g~~~s~~l~~~~~~--~~~~~~~~l~~~~~~~slG~~~sl~~~~~~--~~~~~~~-~~~~--------------~ 349 (377)
T TIGR01324 289 DFSGSSGLFSFVLQRLTQK--QVHAFLDHLQLFGLGYSWGGYESLALCNQP--ELGHRPN-IKRN--------------L 349 (377)
T ss_pred hccCCCceEEEEECCCCHH--HHHHHHHhCCcceEeccCCCccceeecCCC--CCCHHHH-Hhcc--------------C
Confidence 01378999999742211 123466777777777777743222100 00 0011111 1111 2
Q ss_pred CCceEEEecCCCCCHHHHHHHHHhhh
Q 010538 471 PTGAIRVSFGYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 471 ~~~~iRis~~~~~t~eev~~l~~~~~ 496 (508)
.++.||+|++.-+.+|=++.|.++|.
T Consensus 350 ~~~liR~svGlE~~~dl~~dl~~al~ 375 (377)
T TIGR01324 350 EGPLIRVHIGLENVDDLKADLKAGFE 375 (377)
T ss_pred CCCEEEEEeCCCCHHHHHHHHHHHHh
Confidence 35789999998665555555555544
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-20 Score=192.36 Aligned_cols=319 Identities=15% Similarity=0.100 Sum_probs=208.1
Q ss_pred HHHHHhhccCC--CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCC---
Q 010538 28 QIRATEFKRLE--NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMK--- 102 (508)
Q Consensus 28 ~~r~~~f~~~~--~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~--- 102 (508)
.+++..+|... ...-|+.+-..++.++.++..++...+.. |. ..+..++....+..++.+++++++|.+..
T Consensus 25 ~~~~~l~~~~~~~~~P~~~~~~~~~~~~~~i~~~~l~~~~n~---n~-~~~~~~P~~~~~E~~vi~~l~~l~g~~~~~~~ 100 (373)
T PF00282_consen 25 DLREILAPGVTHWHHPRFFGFVPGGPSPASILADLLASALNQ---NG-FTWEASPAATEIEREVIRWLADLFGLPESFTF 100 (373)
T ss_dssp HHHHHTHGCS-TTTSTTBESSSHT--CHHHHHHHHHHHHHT----BT-TSTTTSHHHHHHHHHHHHHHHHHTTGSGGTTS
T ss_pred HHHHHhhccCCCCCChhHhhhccCCccHHHHHHHHHHhhhcc---cc-cccccccccccchHHHHHHHHHHhCCcccccc
Confidence 45543355553 33568888777776766666665544421 22 22334555677888899999999999821
Q ss_pred --CceEEEcCChHHHHHHHHhhcCC-------------CCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCcc
Q 010538 103 --DYKCIFTSGATAALKLVGEAFPW-------------SHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDND 167 (508)
Q Consensus 103 --~~~i~~t~g~t~al~~~~~~l~~-------------~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~ 167 (508)
+-.-++|+|+|+++..++.+... .+.-+|++++..|+|+....+++ |+.++.||.++++.+
T Consensus 101 ~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~Kaa~~l---Glg~~~I~~~~~~~m- 176 (373)
T PF00282_consen 101 SKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSIEKAARIL---GLGVRKIPTDEDGRM- 176 (373)
T ss_dssp TTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THHHHHHHHT---TSEEEEE-BBTTSSB-
T ss_pred cCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHHHHhccee---eeEEEEecCCcchhh-
Confidence 01579999999998766544311 11236888888999887766654 899999999988877
Q ss_pred ccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEE
Q 010538 168 GLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVL 247 (508)
Q Consensus 168 ~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vi 247 (508)
|+++++ ++|++....+..+-+|+.+..++.+|.+.|+++|.++|++ +++|++
T Consensus 177 --------------d~~~L~--~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~------------~~~wlH 228 (373)
T PF00282_consen 177 --------------DIEALE--KALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEK------------YNIWLH 228 (373)
T ss_dssp ---------------HHHHH--HHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHH------------CT-EEE
T ss_pred --------------hHHHhh--hhhcccccccccceeeeccCCCcccccccCHHHHhhhccc------------cceeee
Confidence 567776 5543221122234578889999999999999999999998 999999
Q ss_pred EeccccCCCCC------CCCCCCCCcEEEEeccccccCCCcceEEEEechhH-hh-h--ccccccCceEEecccchhhhh
Q 010538 248 IDAAKGCVTQP------PDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAA-KL-L--KNTYFSGGTVAASIADIDFVK 317 (508)
Q Consensus 248 vD~a~~~g~~~------~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~-~~-l--~~~~~g~~~~~~~~~~~~~~~ 317 (508)
||++++....- ....-..+|.++.++|||++.|.++|+++++++.. .. + .+.+.+.... .....+
T Consensus 229 VDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~---~~~~~~-- 303 (373)
T PF00282_consen 229 VDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGCGVLLVRDKSDLRDAFSINADYLGNDDR---ESDESY-- 303 (373)
T ss_dssp EEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEEESSGGGHHGGGEEEETCTT-S-S---SS-GGG--
T ss_pred ecccccccccccccccccccccccccccccchhhhhcCCccceeEEeecccchHHHhccChhhhccccc---cccccc--
Confidence 99998763221 11222268999999999999899999999998642 21 1 1111110000 000000
Q ss_pred hccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCC
Q 010538 318 RRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTG 397 (508)
Q Consensus 318 ~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (508)
......-.++. -...+.++.+++.+...|+.++.++..+++++|.+.|++. ++++++.++. .
T Consensus 304 ---~~~~~tl~~SR-~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~------~~~el~~~~~--------~ 365 (373)
T PF00282_consen 304 ---DYGDYTLQGSR-RFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKD------PRFELVNEPD--------L 365 (373)
T ss_dssp ---CEEEGSSSSSG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS------TTEEESSTTS--------S
T ss_pred ---ccccccccccc-cchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC------CCEEEEcCCC--------c
Confidence 00111112333 3345677788888888899999999999999999999998 4699998765 7
Q ss_pred ceEEEEee
Q 010538 398 SMVSFNLK 405 (508)
Q Consensus 398 ~~v~~~~~ 405 (508)
++|+|+.+
T Consensus 366 ~~vcFr~k 373 (373)
T PF00282_consen 366 NIVCFRYK 373 (373)
T ss_dssp SEEEEEES
T ss_pred eEEEEEeC
Confidence 99999864
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.6e-19 Score=186.53 Aligned_cols=211 Identities=18% Similarity=0.224 Sum_probs=155.7
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKL 118 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~ 118 (508)
.+.+|++|.+.+++++.+++++.+. ... +.+.......+ .....++.+++.+++++|++. .+++++++.|+.+
T Consensus 85 tg~v~~tNlg~s~l~~~v~eav~~~-~~~-~~~le~~l~~g-~~g~r~~~~e~~lA~l~Gae~----a~vv~sgtaAl~l 157 (464)
T PRK04311 85 TGVVLHTNLGRALLSEAAIEAVTEA-ARG-YSNLEYDLATG-KRGSRDRALAALLCALTGAED----ALVVNNNAAAVLL 157 (464)
T ss_pred CccEEeccCCCCCCCHHHHHHHHHH-Hhc-ccccccchhhc-ccchHHHHHHHHHHHHhCCCe----EEEECCHHHHHHH
Confidence 6788899999999999999987653 333 22222111111 123457789999999999873 4566777789999
Q ss_pred HHhhcCCCCCCeEEEecccccch---HHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCC
Q 010538 119 VGEAFPWSHQSSYMYTMENHNSV---LGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPER 195 (508)
Q Consensus 119 ~~~~l~~~~g~~vl~~~~~h~s~---~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~ 195 (508)
++.++ .+|++||+++.+|+.+ ..+...++..|+++++++.+.. . ++++++ ++|
T Consensus 158 ~l~~l--~~GdeVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~~~--t---------------~~~dle--~aI--- 213 (464)
T PRK04311 158 ALNAL--AAGKEVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTTNR--T---------------HLRDYE--QAI--- 213 (464)
T ss_pred HHHHh--CCCCEEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCCCC--C---------------CHHHHH--Hhc---
Confidence 88775 6889999998877643 2233445678999999976432 2 367778 554
Q ss_pred CCCCCCceEEEEeCCCCC--Cc--cccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC---------CCCCCCCC
Q 010538 196 DPAGDAYNLFAFPSECNF--SG--SRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC---------VTQPPDLS 262 (508)
Q Consensus 196 ~~~~~~t~lv~~~~~~n~--tG--~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~---------g~~~~d~~ 262 (508)
+++|++|++.|.+|+ +| ...|+++|.++||+ +|+++++|++++. +..| ++.
T Consensus 214 ---~~~TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~------------~gi~vivD~gsG~l~~~~~~gl~~~p-~~~ 277 (464)
T PRK04311 214 ---NENTALLLKVHTSNYRIEGFTKEVSLAELAALGKE------------HGLPVVYDLGSGSLVDLSQYGLPDEP-TVQ 277 (464)
T ss_pred ---CccCeEEEEEcCCCccccccCCcCCHHHHHHHHHH------------cCCeEEEECCCcccccchhccCCCCC-chh
Confidence 578999999999997 34 67899999999998 9999999985421 1222 332
Q ss_pred ---CCCCcEEEEeccccccCCCcceEEEEechhHhhhc
Q 010538 263 ---KYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLK 297 (508)
Q Consensus 263 ---~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~ 297 (508)
++++|++++|+||++|||. .|+++++++++++++
T Consensus 278 ~~l~~GaDiv~fSg~K~LgGp~-~G~i~g~~~li~~l~ 314 (464)
T PRK04311 278 ELLAAGVDLVTFSGDKLLGGPQ-AGIIVGKKELIARLK 314 (464)
T ss_pred hHHhcCCcEEEecCcccccCCc-eEEEEEcHHHHHHHh
Confidence 4699999999999999885 799999999887665
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.8e-20 Score=188.94 Aligned_cols=217 Identities=14% Similarity=0.065 Sum_probs=158.6
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEEcc
Q 010538 82 TCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDV 160 (508)
Q Consensus 82 ~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~ 160 (508)
.....+++++.+++++|.+. .++++++++|+.+++.++ .++|++|+++...|.+...... .++..|+++..++.
T Consensus 38 ~~p~~~~le~~la~l~g~~~----a~~~~sG~~Ai~~~l~~l-~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~ 112 (369)
T cd00614 38 GNPTVDALEKKLAALEGGEA----ALAFSSGMAAISTVLLAL-LKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDP 112 (369)
T ss_pred CChhHHHHHHHHHHHHCCCC----EEEEcCHHHHHHHHHHHH-cCCCCEEEECCCCcchHHHHHHHHHhhcCeEEEEeCC
Confidence 34567888999999999753 466677789999999998 6889999999888877665443 45667999988876
Q ss_pred CCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCC
Q 010538 161 EEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFS 240 (508)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~ 240 (508)
+ ++++++ +++ .+++++|++.+++||+|.+.|+++|.++|++
T Consensus 113 ~--------------------d~~~l~--~~i------~~~~~~v~~e~~~np~g~~~dl~~i~~la~~----------- 153 (369)
T cd00614 113 D--------------------DPEALE--AAI------KPETKLVYVESPTNPTLKVVDIEAIAELAHE----------- 153 (369)
T ss_pred C--------------------CHHHHH--Hhc------CCCCeEEEEECCCCCCCeecCHHHHHHHHHH-----------
Confidence 4 245666 444 3578999999999999999999999999998
Q ss_pred CCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEec-hhHhhhccccccCceEEecccchhhhh
Q 010538 241 KGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRN-DAAKLLKNTYFSGGTVAASIADIDFVK 317 (508)
Q Consensus 241 ~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~ 317 (508)
+|+++++|++++.+... ...+.++|+++.|++|+++++.. .|+++.++ +++++++....
T Consensus 154 -~g~~livD~t~~~~~~~-~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~---------------- 215 (369)
T cd00614 154 -HGALLVVDNTFATPYLQ-RPLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRL---------------- 215 (369)
T ss_pred -cCCEEEEECCCcchhcC-ChhhhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHH----------------
Confidence 99999999999877542 22245799999999999985542 58888877 66665543311
Q ss_pred hccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhccc
Q 010538 318 RRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLR 373 (508)
Q Consensus 318 ~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~ 373 (508)
...++.+....+.+..+++ .+..+.++..++++++.+.|++.+
T Consensus 216 --------~~g~~~~p~~a~~~l~~l~-----tl~~r~~~~~~na~~la~~L~~~~ 258 (369)
T cd00614 216 --------ALGTILSPFDAWLLLRGLK-----TLPLRMERHSENALKVAEFLEKHP 258 (369)
T ss_pred --------hhCCCCCHHHHHHHHcCCC-----CHHHHHHHHHHHHHHHHHHHHcCC
Confidence 0112223222222222222 356667888889999999998874
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.1e-20 Score=189.80 Aligned_cols=313 Identities=10% Similarity=0.019 Sum_probs=199.4
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHH-HHHHhcCCeEEEEccCCcc
Q 010538 86 VRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIR-EYALSQGAAAFAIDVEEAV 164 (508)
Q Consensus 86 ~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~-~~~~~~G~~v~~v~~~~~~ 164 (508)
...+++.+|++.+.. ++++++|+++|+.+++.++ +++|++||++...|++..... ..+.+.|+++..++.+.
T Consensus 63 ~~~Le~~iA~le~~~----~~~~~~sG~~Ai~~~l~al-l~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~~-- 135 (394)
T PRK09028 63 HFAFQAAIVELEGGA----GTALYPSGAAAISNALLSF-LKAGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDPMI-- 135 (394)
T ss_pred HHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEECCCcHHHHHHHHHhhhhcceEEEEECCCC--
Confidence 557889999998764 4789999999999999998 789999999988886665533 34566899988876431
Q ss_pred CccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCe
Q 010538 165 DNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRW 244 (508)
Q Consensus 165 ~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~ 244 (508)
.+.++ +++ +++|++|++++++||||.+.|+++|.++||+ +|+
T Consensus 136 ------------------~e~l~--~~l------~~~TklV~lespsNPtg~v~dl~~I~~la~~------------~g~ 177 (394)
T PRK09028 136 ------------------GEGIR--ELI------RPNTKVLFLESPGSITMEVQDVPTLSRIAHE------------HDI 177 (394)
T ss_pred ------------------HHHHH--Hhc------CcCceEEEEECCCCCCCcHHHHHHHHHHHHH------------cCC
Confidence 34456 443 5689999999999999999999999999998 999
Q ss_pred EEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCc
Q 010538 245 MVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGV 322 (508)
Q Consensus 245 ~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~ 322 (508)
++++|.+++.+.. .+..++|+|+++.|+|||++|+.. .|+++.+++..+.+...
T Consensus 178 ~lvvD~t~a~p~~-~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~----------------------- 233 (394)
T PRK09028 178 VVMLDNTWASPIN-SRPFEMGVDISIQAATKYIVGHSDVMLGTATANEKHWDQLREH----------------------- 233 (394)
T ss_pred EEEEECCcccccc-CCccccCceEEEEeCCeEecCCCCEEEEEEECCHHHHHHHHHH-----------------------
Confidence 9999999988742 333467899999999999987855 46665555554433311
Q ss_pred cccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceE-EEecCCCCCccc--------
Q 010538 323 EELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVC-TIYGTYTSEVSY-------- 393 (508)
Q Consensus 323 ~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~-~~~~~~~~~~~~-------- 393 (508)
.....++.+....+.+...++. +..+.++..+.+..+.+.|++.+ .+ +++-|.-. ..+
T Consensus 234 -~~~~G~~~~p~~a~l~~rgl~T-----L~lR~~~~~~na~~la~~L~~~p------~v~~V~yPgl~-s~p~~~~~~~~ 300 (394)
T PRK09028 234 -SYLMGQCTSPDDVYLAMRGLRT-----LGVRLAQHEKNALKVANWLATRP------EVDHVRHPAFE-TCPGHEFFKRD 300 (394)
T ss_pred -HHhcCCCCCHHHHHHHHcccCc-----HHHHHHHHHHHHHHHHHHHhcCC------CccEEECCCCC-CCccHHHHHHh
Confidence 0011223333334433334333 46667777888888888888764 34 34333210 000
Q ss_pred -CCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCC
Q 010538 394 -HDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPT 472 (508)
Q Consensus 394 -~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 472 (508)
..-+++++|.+++.+... ...+.+.|+-..+.++-|...+.-. +++ ...+....+.. +..+
T Consensus 301 ~~g~gg~~sf~l~~~~~~~--~~~f~~~l~l~~~~~slG~~~sLv~-~p~-~~~~~~~~~~~--------------~~~~ 362 (394)
T PRK09028 301 FSGSNGLFSFVLKQGDPKA--VTALVEGMQHFKMGFSWGGFESLIL-GVF-GINKLRTATNW--------------DFSK 362 (394)
T ss_pred ccCCCceEEEEECCCCHHH--HHHHHHhCCcceEecccCCCcceeE-CCC-CcCccCchhhh--------------cCCC
Confidence 012789999996422111 1234444443444455443222110 000 00000000111 2235
Q ss_pred ceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 473 GAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 473 ~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
+.||+|++.-+.+|=++.+.+++..|
T Consensus 363 ~liR~svGlEd~~dLi~Dl~~Al~~~ 388 (394)
T PRK09028 363 PLIRLHIGLEDVDDLIADLEAGFERY 388 (394)
T ss_pred CeEEEEeCcCCHHHHHHHHHHHHHHH
Confidence 78999999877666666666666644
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-19 Score=181.04 Aligned_cols=300 Identities=13% Similarity=0.082 Sum_probs=188.3
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKL 118 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~ 118 (508)
.+++.|+.+-...+|+.+++++.+. .... ..|+. ...++++++++++ + +|++|+|+++++.+
T Consensus 8 ~~~i~l~~~~np~~p~~~~~a~~~~-~~~~-----~~yp~-------~~~l~~~ia~~~~---~--~I~vt~G~~~al~~ 69 (311)
T PRK08354 8 EGLIDFSASVNPYPPEWLDEMFERA-KEIS-----GRYTY-------YEWLEEEFSKLFG---E--PIVITAGITEALYL 69 (311)
T ss_pred cceeEecCCCCCCCCHHHHHHHHHH-HHHh-----hcCCC-------hHHHHHHHHHHHC---C--CEEECCCHHHHHHH
Confidence 4678888776655566666665433 2211 12221 3457889999998 3 69999999999998
Q ss_pred HHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCC
Q 010538 119 VGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPA 198 (508)
Q Consensus 119 ~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~ 198 (508)
++..+ .+|+.|+++...|+.+. ..++..|.+++.++. |++.++ +.+
T Consensus 70 ~~~~~--~~gd~vlv~~P~y~~~~---~~~~~~g~~~~~~~~---------------------d~~~l~--~~~------ 115 (311)
T PRK08354 70 IGILA--LRDRKVIIPRHTYGEYE---RVARFFAARIIKGPN---------------------DPEKLE--ELV------ 115 (311)
T ss_pred HHHhh--CCCCeEEEeCCCcHHHH---HHHHHcCCEEeecCC---------------------CHHHHH--Hhh------
Confidence 88654 37899998886665554 444556988876643 356666 443
Q ss_pred CCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEecccccc
Q 010538 199 GDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFG 278 (508)
Q Consensus 199 ~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g 278 (508)
. +++++++++++||||.+++.+++.++++ +|+++|+++|+|+++..-...-.....+..+++.|++|.|+
T Consensus 116 ~-~~~~vi~~~P~NPTG~~~~~~~l~~l~~---------~a~~~~~~li~De~y~~f~~~~~~~~~~~vi~~~S~SK~~~ 185 (311)
T PRK08354 116 E-RNSVVFFCNPNNPDGKFYNFKELKPLLD---------AVEDRNALLILDEAFIDFVKKPESPEGENIIKLRTFTKSYG 185 (311)
T ss_pred c-CCCEEEEecCCCCCCCccCHHHHHHHHH---------HhhhcCcEEEEeCcchhccccccccCCCcEEEEeccHhhcC
Confidence 1 3578889999999999999999988887 56679999999999853211101111234588899999999
Q ss_pred CCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHH
Q 010538 279 YPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICR 356 (508)
Q Consensus 279 ~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~ 356 (508)
.+| +||+++ ..+.++.... ..+.+..+..++. .++. .+.+
T Consensus 186 -l~GlRiG~~v~---~~~~l~~~~~--------------------------~~~~~~~~~~~~~---~~~~-~~~~---- 227 (311)
T PRK08354 186 -LPGIRVGYVKG---FEEAFRSVRM--------------------------PWSIGSTGYAFLE---FLIE-DDFE---- 227 (311)
T ss_pred -Cccceeeeeee---hHHHHHHcCC--------------------------CccCCHHHHHHHH---HHHH-hHHH----
Confidence 557 799998 3233332210 0112222222222 2221 1122
Q ss_pred HHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCc
Q 010538 357 HIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNP 436 (508)
Q Consensus 357 ~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~ 436 (508)
++.+..+++++..+.+. +.... ++. ++++++.+.+ ..++.+.|.++||.+++|..+.
T Consensus 228 ~~~~~~~~~~~~~~~l~------~~l~~-~~~--------~~~~~~~~~~-------~~~~~~~l~~~gv~v~~g~~f~- 284 (311)
T PRK08354 228 HLRKTMPLIWREKERFE------KALYV-KSD--------ANFFIKDVGD-------AEKFVEFLKRNGILVRDCTSFG- 284 (311)
T ss_pred HHHHHHHHHHHHHHHHH------HhcCC-CCC--------CcEEEEECCC-------HHHHHHHHHHCCeEEEecccCC-
Confidence 22333344444443331 11111 222 5666655432 2347888899999999986541
Q ss_pred hHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 437 GACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 437 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
.++++||+++ +.++.++++++++++
T Consensus 285 ----------------------------------~~~~iRi~~~---~~~~~~~l~~al~~~ 309 (311)
T PRK08354 285 ----------------------------------LPGYIRFSVR---DREENEKLIRALREW 309 (311)
T ss_pred ----------------------------------CCCeEEEEeC---CHHHHHHHHHHHHHh
Confidence 1478999999 888899999998875
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-20 Score=182.81 Aligned_cols=348 Identities=17% Similarity=0.106 Sum_probs=256.7
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhcccc--CCCCCccchhhhhhHHHHH-HHHHHHHHcCCCCCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVY--GNPHSQSDISLATCDIVRA-AREQVLDYFNASMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~r~~la~~~~~~~~~~~i~~t~g~t~a 115 (508)
...|-|= ++-...++.|++++-..+ .+.| +.|+..|+.|.+..+.+|. +.+...++||++.. +|--.|| +.|
T Consensus 26 ~~~ieLI-ASEN~~S~aV~~A~gS~l-tnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga~~a--nVQPhSG-s~A 100 (413)
T COG0112 26 REHIELI-ASENFTSPAVMEAQGSDL-TNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGAEYA--NVQPHSG-SQA 100 (413)
T ss_pred hhceeee-eccccCCHHHHHHHhhhh-hhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhCCCcc--ccCCCCc-hHH
Confidence 4555554 667778999999876554 4544 6788888888887777776 88889999999877 5665555 559
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHH---HHHHHhcCCeEEEEccCC-ccCccccccccccccccccchhhhhcCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGI---REYALSQGAAAFAIDVEE-AVDNDGLSESLVTSTKISLLPIQRRKGAS 191 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~---~~~~~~~G~~v~~v~~~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~~ 191 (508)
+..++.++ .++||.|+-.+..|...+.- ..+.... .++...+++. ++.+ |.++++ +.
T Consensus 101 N~av~~Al-l~pGDtimgm~l~~GGHltHg~~v~~sG~~-~~~v~Y~vd~et~~I---------------DyD~~~--k~ 161 (413)
T COG0112 101 NQAVYLAL-LQPGDTIMGLDLSHGGHLTHGSPVNFSGKL-FNVVSYGVDPETGLI---------------DYDEVE--KL 161 (413)
T ss_pred HHHHHHHH-cCCCCeEecccCCCCCcccCCCCCCcccee-EEeEecccccccCcc---------------CHHHHH--HH
Confidence 99999998 79999999888777654421 2222222 4555556664 3555 678887 33
Q ss_pred CCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC-----CCCCCCCCCCCC
Q 010538 192 FPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC-----VTQPPDLSKYPV 266 (508)
Q Consensus 192 l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~-----g~~~~d~~~~~~ 266 (508)
.. ..++|+++.- .+..-...|.+++.++|++ .|+++++|.+|-. |.-|-++.. +
T Consensus 162 a~-----e~kPK~ii~G--~SaY~r~id~~~~reIad~------------VGA~L~~DmAHiaGLVA~G~~p~P~~~--A 220 (413)
T COG0112 162 AK-----EVKPKLIIAG--GSAYSRPIDFKRFREIADE------------VGAYLMVDMAHVAGLIAGGVHPNPLPH--A 220 (413)
T ss_pred HH-----HhCCCEEEEC--ccccccccCHHHHHHHHHH------------hCceEEehHHHHHHHHhcccCCCCCCc--c
Confidence 32 3467888754 3445678999999999998 8999999999965 455555554 9
Q ss_pred cEEEEeccccccCCCcceEEEEec-hhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHH
Q 010538 267 DFVVMSFYKIFGYPTGLGALIMRN-DAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNL 345 (508)
Q Consensus 267 D~~~~S~~K~~g~P~G~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~ 345 (508)
|++++|+||+|.||+| |+++.++ ++.+++...+|.|.+ |.|....+++...|++.
T Consensus 221 dvVTtTTHKTlrGPrG-G~Il~~~eel~kkin~aVFPg~q-----------------------ggpl~HviAakaVa~~E 276 (413)
T COG0112 221 DVVTTTTHKTLRGPRG-GIILTNDEELAKKINSAVFPGLQ-----------------------GGPLMHVIAAKAVAFKE 276 (413)
T ss_pred ceEeCCcccCCCCCCc-eEEEeccHHHHHHhhhhcCCccC-----------------------CChHHHHHHHHHHHHHH
Confidence 9999999998888998 8888886 777777776665533 56777889999999998
Q ss_pred HHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCC
Q 010538 346 INSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSG 425 (508)
Q Consensus 346 ~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~g 425 (508)
..+-+++..++++.++++.|.+.|.+. |+++++..+. .+++.+++... .++.++..+.|.+.|
T Consensus 277 al~p~fk~Ya~qVv~NAkaLAe~l~~~-------G~~vvsGgTd-------nHl~lVDl~~~---~~~Gk~ae~~L~~~~ 339 (413)
T COG0112 277 ALEPEFKEYAKQVVKNAKALAEALKER-------GFKVVSGGTD-------NHLVLVDLRSK---GLTGKKAEAALERAG 339 (413)
T ss_pred HcChhHHHHHHHHHHHHHHHHHHHHHc-------CCeEecCCcc-------ceEEEEEcccC---CCCHHHHHHHHHHcC
Confidence 888889999999999999999999986 8999986554 78888888622 144456899999999
Q ss_pred CeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCC----CHHHHHHHHHhhhhhhhh
Q 010538 426 IQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMS----TFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 426 I~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~----t~eev~~l~~~~~~~~~~ 501 (508)
|.+.--... ||+++ ...+..|||..-..+ .++|++.+.+.|.+.++.
T Consensus 340 It~NKN~iP--------------------------~D~~~---p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~~ 390 (413)
T COG0112 340 ITVNKNAIP--------------------------FDPES---PFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLDG 390 (413)
T ss_pred EeeccCCCC--------------------------CCCCC---CCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHhc
Confidence 997543221 22222 123678999865443 578888888888877654
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-20 Score=196.18 Aligned_cols=373 Identities=14% Similarity=0.105 Sum_probs=213.6
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHH-HHHHHHcC---CCCCCceEEEcCChHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAR-EQVLDYFN---ASMKDYKCIFTSGATA 114 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r-~~la~~~~---~~~~~~~i~~t~g~t~ 114 (508)
++.+.|.-+-.+..++..+.++.+......|..|.. .....+++. +.+.+.++ .++++++|++|+|+++
T Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~Y~~p~g-------~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~ 166 (521)
T TIGR03801 94 RDIISYVIDQLGFDPDAFLYEMCDGIIGDNYPVPDR-------MLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTA 166 (521)
T ss_pred HHHHhhcCCCCCCCCCHHHHHHHHHhhcCCCCCCCC-------CHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHH
Confidence 446666666656666677777666543322211211 122333333 34444333 2332236999999999
Q ss_pred HHHHHHhhc----CCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCC
Q 010538 115 ALKLVGEAF----PWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGA 190 (508)
Q Consensus 115 al~~~~~~l----~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~ 190 (508)
|+..++.++ ...+|++|++....|+.+....++. ..|++++.++.+....- . ....+.|.+.++ +
T Consensus 167 al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~-~~g~~vv~i~~~~~~~~-g-------~~~~~~d~~~l~--~ 235 (521)
T TIGR03801 167 AMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELP-RYDFEVVRIKADEMTED-G-------THTWQYPDKELE--K 235 (521)
T ss_pred HHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHh-cCCcEEEEeeccccccc-c-------cccCCCCHHHHH--H
Confidence 999988772 2688999999987777766554432 34778888877532110 0 000123678888 4
Q ss_pred CCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC--CeEEEEeccccCCC-CCCCCCCC--C
Q 010538 191 SFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG--RWMVLIDAAKGCVT-QPPDLSKY--P 265 (508)
Q Consensus 191 ~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~--g~~vivD~a~~~g~-~~~d~~~~--~ 265 (508)
+ .+++++++++++++||||.+++.+++.++++ +|+++ +++||+|.+++.-. ...++... +
T Consensus 236 ~------~~~~~kai~l~nP~NPTG~vls~e~l~~I~~---------ia~~~~~~l~II~DEvY~~f~~~~~sl~~~~~~ 300 (521)
T TIGR03801 236 L------RDPSIKALFVVNPSNPPSVAMSDESIEKIVD---------IVANDRPDLMILTDDVYGTFVDDFRSLFAELPY 300 (521)
T ss_pred h------cCCCCcEEEEeCCCCCCCCCCCHHHHHHHHH---------HHHhcCCCeEEEECCCchhhcccccchhhhCCC
Confidence 3 3578999999999999999999777766655 34435 99999999986311 11222111 2
Q ss_pred CcEEEEeccccccCCCc--ceEEEEech-----hHhhh--------ccccccCceEEecccchhhhhhcc----Cccccc
Q 010538 266 VDFVVMSFYKIFGYPTG--LGALIMRND-----AAKLL--------KNTYFSGGTVAASIADIDFVKRRQ----GVEELF 326 (508)
Q Consensus 266 ~D~~~~S~~K~~g~P~G--~G~l~~~~~-----~~~~l--------~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~ 326 (508)
.-+++.|++|.|| .+| +|+++++++ +++.+ ...+. .+...+....|.++.. ......
T Consensus 301 ~vI~v~SfSK~fg-~~G~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~---~~~~~p~~~~fidr~vadsr~v~~~~ 376 (521)
T TIGR03801 301 NTIGVYSFSKYFG-ATGWRLGTIALHKDNIFDKLIAELPEEKKKELDKRYS---SLTTEPRKLKFIDRLVADSRQVALNH 376 (521)
T ss_pred CEEEEEcchhhcc-CchhhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhc---cccCChhhhhhHHHHHHHHHHHHHhc
Confidence 3488999999999 558 899999865 33221 11110 0000111111111100 001112
Q ss_pred cCCCCChhHHH--HHHHHHHHHH--hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEE
Q 010538 327 EDGTASFLSIA--SIRHGFNLIN--SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSF 402 (508)
Q Consensus 327 ~~gt~~~~~~~--~l~~al~~~~--~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 402 (508)
..|. +.++.. ++.++...++ +...+...+.+++.++.+.+.| .. .+....+.+ +.++++
T Consensus 377 ~~g~-s~p~Q~q~al~a~~all~~~~~y~~~~~~~~~~R~~~l~~~L-g~-------~~~~~~~~g--------~~Y~~~ 439 (521)
T TIGR03801 377 TAGL-STPQQVQMALFSLFALMDKENAYKAETKDICRRREKLLFRGL-GL-------PLQEDPNDV--------AYYTLI 439 (521)
T ss_pred cCCC-CcHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhc-CC-------CCcCCCCCe--------EEEEEe
Confidence 2333 333332 3222333322 1235666777788888887777 22 121122222 678888
Q ss_pred EeeCCC----CCc--------cCH-HHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCC
Q 010538 403 NLKRPD----GSW--------FGY-REVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHG 469 (508)
Q Consensus 403 ~~~~~~----~~~--------~~~-~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 469 (508)
++.... +.+ .+. ..+.+++++.||.+.+|..|..+
T Consensus 440 di~~~~~~~~~~~f~~~l~~~~~~~~~~~~L~~e~gV~v~PG~~Fg~~-------------------------------- 487 (521)
T TIGR03801 440 DLEEWAEKNYGEEFSSYLKKNYSPVDVLFRLAEETGIVLLPGGGFGGP-------------------------------- 487 (521)
T ss_pred ehHHHHHHhcchHHHHHHhccCCHHHHHHHHHHhCCEEEeCchhcCCC--------------------------------
Confidence 876421 000 112 23556667889999999866431
Q ss_pred CCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 470 KPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 470 ~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
++.+|||+.. .+++++.+..+.|+++++
T Consensus 488 --~~~vRisla~-l~~~~~~~~~~rl~~~~~ 515 (521)
T TIGR03801 488 --EWSVRVSLAN-LNEYDYAEIGRAIRKILD 515 (521)
T ss_pred --CCeEEEEecC-CCHHHHHHHHHHHHHHHH
Confidence 4679999963 367889999999888764
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-19 Score=191.51 Aligned_cols=369 Identities=13% Similarity=0.086 Sum_probs=211.4
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHH-HHHHHcCC---CCCCceEEEcCChHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAARE-QVLDYFNA---SMKDYKCIFTSGATA 114 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-~la~~~~~---~~~~~~i~~t~g~t~ 114 (508)
.+.|.|.-+-....++..+.++.+...... |+...+...+.+++.+ .+.+..+. ++++.+|++|+|+++
T Consensus 100 ~~~i~l~~g~p~~~~~~~v~e~~~~~~~~~-------Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~ 172 (527)
T PRK09275 100 RDAVSYVRDQLGFDADEFVYELVDGIIGDN-------YPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTA 172 (527)
T ss_pred HHHHhhcCCCCCCCCCHHHHHHHHHHhcCC-------CCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHH
Confidence 345666666655555665555555553321 2222222333443333 22222222 211127999999999
Q ss_pred HHHHHHhhc----CCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCC
Q 010538 115 ALKLVGEAF----PWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGA 190 (508)
Q Consensus 115 al~~~~~~l----~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~ 190 (508)
|+..++.++ ...+||+|+++...|+.+....++. ..|++++.++.+.+..+ ++|+++++ +
T Consensus 173 al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~-g~~~~~v~v~~~~~~~f-------------~~d~~~l~--~ 236 (527)
T PRK09275 173 AMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPELP-RYDLEVVHINADEENEW-------------QYPDSELE--K 236 (527)
T ss_pred HHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHc-CCCeEEEEeecCcccCC-------------CCCHHHHH--h
Confidence 999988863 2688999999997777666554432 22455555655432222 23678888 4
Q ss_pred CCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCC--CCCeEEEEeccccCCC-CCCCCCC-C-C
Q 010538 191 SFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFS--KGRWMVLIDAAKGCVT-QPPDLSK-Y-P 265 (508)
Q Consensus 191 ~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~--~~g~~vivD~a~~~g~-~~~d~~~-~-~ 265 (508)
+ .+++|++|++++++||||.+++.+++.++++ +|+ +++++||+|.++..-. ...++.. . +
T Consensus 237 ~------~~~~tkai~l~nP~NPTG~v~s~e~l~~I~~---------ia~~~~~~l~II~DEvY~~f~~~~~s~~~~~~~ 301 (527)
T PRK09275 237 L------RDPSIKALFLVNPSNPPSVAMSDESLEKIAD---------IVNEKRPDLMIITDDVYGTFVDDFRSLFAVLPY 301 (527)
T ss_pred h------cCCCCCEEEEeCCcCCcCCCCCHHHHHHHHH---------HHHhcCCCcEEEECCCChhhcccccCHHHhCCC
Confidence 4 3678999999999999999999777766655 342 3699999999986321 1112111 1 2
Q ss_pred CcEEEEeccccccCCCc--ceEEEEech-----hHhhh--------ccccccCceEEecccchhhhhhc----cCccccc
Q 010538 266 VDFVVMSFYKIFGYPTG--LGALIMRND-----AAKLL--------KNTYFSGGTVAASIADIDFVKRR----QGVEELF 326 (508)
Q Consensus 266 ~D~~~~S~~K~~g~P~G--~G~l~~~~~-----~~~~l--------~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~ 326 (508)
.-+++.|++|.|| .+| +||++++++ +++.+ ...+. .+...+....|..+. .......
T Consensus 302 ~~I~v~SfSK~f~-mtG~RlG~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~---~~~~~p~~~~fidrlvad~~~v~~~~ 377 (527)
T PRK09275 302 NTILVYSFSKYFG-ATGWRLGVIALHEDNVFDKLIAKLPEEKKKELDKRYS---SLTTDPEKLKFIDRLVADSRQVALNH 377 (527)
T ss_pred CEEEEeehhhhcc-CcHhHHhhhhcCchhHHHHHHHhccHHHHHHHHhhhh---hccCCcchhhhHHHHHHHHHHHHHhh
Confidence 4588999999999 668 899999886 43333 11100 000001111111110 0011122
Q ss_pred cCCCCChhHHH-H---HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEE
Q 010538 327 EDGTASFLSIA-S---IRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSF 402 (508)
Q Consensus 327 ~~gt~~~~~~~-~---l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 402 (508)
..|.+.+.+.+ + +.++++.- +...+..++.+++.++.+.+.|. . .+....+.+ +.++++
T Consensus 378 t~~~s~p~Q~a~al~~~~all~~~-~~~~~~~~~~~~~Rr~~l~~~Lg-~-------~~~~~~p~g--------~fY~~~ 440 (527)
T PRK09275 378 TAGLSTPQQVQMALFSLFALLDEE-DAYKKAMKDIIRRRYKALYEGLG-L-------PEPEDPNNA--------AYYTLI 440 (527)
T ss_pred ccCCCCHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHcC-C-------CCcCCCCCe--------eEEEEE
Confidence 23333333333 2 22233321 12356677788888888877772 1 122122222 677777
Q ss_pred EeeCCC----CCc--------cCHHH-HHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCC
Q 010538 403 NLKRPD----GSW--------FGYRE-VEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHG 469 (508)
Q Consensus 403 ~~~~~~----~~~--------~~~~~-l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 469 (508)
++.... +.. .+..+ +.+++++.||.+.+|..|..+
T Consensus 441 di~~~~~~~~g~~f~~~l~~~~~~~~f~~~Ll~e~gV~v~PG~~Fg~~-------------------------------- 488 (527)
T PRK09275 441 DLEEWAEKNYGKEFADYLKKNYSPVDLLFRLAEETGVVLLPGGGFGGP-------------------------------- 488 (527)
T ss_pred EhHHhhhhccCchhhhhhhccCCHHHHHHHHHhcCCEEEeCchhhCCC--------------------------------
Confidence 775421 100 12223 456667889999999866331
Q ss_pred CCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 470 KPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 470 ~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
++++|+|+.. .+++++....+.|.++++.
T Consensus 489 --~~~vRis~a~-~~~~~~~~~~~rl~~~l~~ 517 (527)
T PRK09275 489 --EWSVRVSLAN-LNEEDYAKIGKAIRKLLDE 517 (527)
T ss_pred --CCeEEEEEec-CCHHHHHHHHHHHHHHHHH
Confidence 5789999973 3678999999998888754
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-19 Score=188.62 Aligned_cols=215 Identities=13% Similarity=0.062 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHH-HHHHHHhcCCeEEEEccCC
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLG-IREYALSQGAAAFAIDVEE 162 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~-~~~~~~~~G~~v~~v~~~~ 162 (508)
....++++.+++++|++ .+++++|+++|+.+++.++ .++|++|+++...|++... +...++..|+++..++.+
T Consensus 54 p~~~~le~~la~l~g~~----~~~~~~sG~~Ai~~al~al-~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~~~- 127 (380)
T TIGR01325 54 PTVAAFEERIAALEGAE----RAVATATGMSAIQAALMTL-LQAGDHVVASRSLFGSTVGFISEILPRFGIEVSFVDPT- 127 (380)
T ss_pred chHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEecCCcchHHHHHHHHHHHhCCEEEEECCC-
Confidence 34678899999999984 3577899999999999888 6789999998887876544 344567789999988764
Q ss_pred ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC
Q 010538 163 AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG 242 (508)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~ 242 (508)
|+++++ +++ +++|++|++++++||+|.+.|+++|.++|++ +
T Consensus 128 -------------------d~~~l~--~~i------~~~tklV~le~p~np~g~~~dl~~I~~la~~------------~ 168 (380)
T TIGR01325 128 -------------------DLNAWE--AAV------KPNTKLVFVETPSNPLGELVDIAALAELAHA------------I 168 (380)
T ss_pred -------------------CHHHHH--Hhc------CCCceEEEEECCCCCCCeeeCHHHHHHHHHH------------c
Confidence 255666 444 4578999999999999999999999999998 8
Q ss_pred CeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc-c-eEEEEechhHhhhccccccCceEEecccchhhhhhcc
Q 010538 243 RWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG-L-GALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQ 320 (508)
Q Consensus 243 g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G-~-G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~ 320 (508)
|+++++|++++.+....++ ..++|+++.|++|+++++.. + |+++.+++.++.++.....
T Consensus 169 gi~livD~a~~~~~~~~pl-~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~~------------------ 229 (380)
T TIGR01325 169 GALLVVDNVFATPVLQQPL-KLGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYLRH------------------ 229 (380)
T ss_pred CCEEEEECCCcccccCCch-hhCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHHHh------------------
Confidence 9999999998754332222 45789999999999995531 3 7777777776655433110
Q ss_pred CccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhccc
Q 010538 321 GVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLR 373 (508)
Q Consensus 321 ~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~ 373 (508)
..++.+....+.+...++. +..+.++..+.++++.+.|++.+
T Consensus 230 ------~g~~~~p~~a~~~l~~l~t-----l~~r~~~~~~~a~~la~~L~~~p 271 (380)
T TIGR01325 230 ------TGPAMSPFNAWVLLKGLET-----LSLRMQKQFDSALAIAEWLQAQP 271 (380)
T ss_pred ------hCCCCCHHHHHHHHhccCc-----HHHHHHHHHHHHHHHHHHHHcCC
Confidence 1122222222222223333 44556777778888888888763
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-19 Score=188.06 Aligned_cols=313 Identities=14% Similarity=0.045 Sum_probs=196.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHH-HHHHhcCCeEEEEccCC
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIR-EYALSQGAAAFAIDVEE 162 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~-~~~~~~G~~v~~v~~~~ 162 (508)
...+.+++.+|++.|++. .+ +++|+++|+.+++.++ .++|++|+++...|++..... ..++..|.++..++..
T Consensus 60 p~~~~Le~~lA~l~g~~~---~v-~~~sG~~Ai~~~l~al-l~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~~- 133 (405)
T PRK08776 60 PTRDLLGEALAELEGGAG---GV-ITATGMGAINLVLNAL-LQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADLT- 133 (405)
T ss_pred hHHHHHHHHHHHHhCCCc---eE-EEcCHHHHHHHHHHHH-hCCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECCC-
Confidence 446778899999999853 35 4555579999999998 789999998877776644433 3455678888888752
Q ss_pred ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC
Q 010538 163 AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG 242 (508)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~ 242 (508)
|+++++ +++ +++|++|++++++||||.+.|+++|.++|++ +
T Consensus 134 -------------------d~~~l~--~~i------~~~tklV~l~~P~NPtG~v~dl~~I~~la~~------------~ 174 (405)
T PRK08776 134 -------------------DPRSLA--DAL------AQSPKLVLIETPSNPLLRITDLRFVIEAAHK------------V 174 (405)
T ss_pred -------------------CHHHHH--Hhc------CcCCeEEEEECCCCCCCccCCHHHHHHHHHH------------c
Confidence 356677 444 4578999999999999999999999999998 8
Q ss_pred CeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEec-hhHhhhccccccCceEEecccchhhhhhc
Q 010538 243 RWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRN-DAAKLLKNTYFSGGTVAASIADIDFVKRR 319 (508)
Q Consensus 243 g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~ 319 (508)
|+++++|++++.+.....+ .+++|+++.|+||++++|.+ .|+++.++ ++.+++....
T Consensus 175 gi~vIvD~a~a~~~~~~pl-~~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~------------------- 234 (405)
T PRK08776 175 GALTVVDNTFLSPALQKPL-EFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWA------------------- 234 (405)
T ss_pred CCEEEEECCCcccccCCcc-cccCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHH-------------------
Confidence 9999999999876543333 36899999999999987765 47777754 3433332110
Q ss_pred cCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEE-EecCCCCCccc-----
Q 010538 320 QGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCT-IYGTYTSEVSY----- 393 (508)
Q Consensus 320 ~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~-~~~~~~~~~~~----- 393 (508)
.....+.+....+.+...+++ ++.+.++..+.+..+.+.|++.+ .+. +.-|.-. ..+
T Consensus 235 -----~~~g~~~s~~~a~l~~~gl~t-----l~~r~~~~~~na~~la~~L~~~p------~v~~V~yP~l~-~~~~~~~~ 297 (405)
T PRK08776 235 -----NALGLTGSPFDAFLTLRGLRT-----LDARLRVHQENADAIAALLDGHA------AVNQVYYPGLA-SHPGHALA 297 (405)
T ss_pred -----HhcCCCCCHHHHHHHHhhhCc-----HHHHHHHHHHHHHHHHHHHHcCC------CeeEEECCCCC-CCcCHHHH
Confidence 001112333344444444444 46677788888888888888774 443 3333211 000
Q ss_pred ----CCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhh----hhhhhcCCccCCCcc
Q 010538 394 ----HDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDL----LSNIEAGHVCWDDND 465 (508)
Q Consensus 394 ----~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~----~~~~~~~~~~~~~~~ 465 (508)
..-+++++|.+++. .+. ..++...|+-..+.++-|...+.- .+++. ..|+.+ ...+|
T Consensus 298 ~~~~~g~g~~~s~~~~~~-~~~--~~~f~~~l~l~~~~~s~G~~~sl~-~~p~~-~~h~~~~~~~~~~~g---------- 362 (405)
T PRK08776 298 ARQQKGFGAMLSFELEGG-EAA--VRAFVDGLRYFTLAESLGGVESLI-AHPAS-MTHAAMTAEARAAAG---------- 362 (405)
T ss_pred HhcCCCCceEEEEEEcCC-HHH--HHHHHHhCCcceEccCCCCCceEE-ECCcc-cccccCCHHHHHhcC----------
Confidence 11377999999642 111 122444444334444444321110 00000 011111 11232
Q ss_pred ccCCCCCceEEEecCCCCCHHHHHHHHHhhhh
Q 010538 466 IIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFD 497 (508)
Q Consensus 466 ~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~ 497 (508)
..++.||+|++.-+.++=++.+-++|..
T Consensus 363 ----i~~~liR~svGlE~~~dli~dl~~al~~ 390 (405)
T PRK08776 363 ----ISDGLLRLSVGIESAEDLLIDLRAGLAR 390 (405)
T ss_pred ----CCCCeEEEEeCcCCHHHHHHHHHHHHHH
Confidence 3478999999987666555555555554
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.8e-19 Score=185.29 Aligned_cols=335 Identities=12% Similarity=0.083 Sum_probs=206.6
Q ss_pred CCCeeeeCCCCCCC----CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHH
Q 010538 39 NGTVYLDHAGATLY----SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATA 114 (508)
Q Consensus 39 ~~~iyld~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~ 114 (508)
++..|+|.++.+.+ +|.+++++.+.+. . +++.+..........+..+++++.++++++. + .+++++|+ +
T Consensus 44 ~g~~~ld~~s~~~lgl~~~p~v~~A~~~~l~-~-~g~~~~~~~~~~~~~~~~~~l~~~la~~~~~--~--~~~~~sG~-~ 116 (402)
T PRK07505 44 DGHTFVNFVSCSYLGLDTHPAIIEGAVDALK-R-TGSLHLSSSRTRVRSQILKDLEEALSELFGA--S--VLTFTSCS-A 116 (402)
T ss_pred CCceEEEeecCCccCCCCCHHHHHHHHHHHH-H-hCCCCCCccchhhhhHHHHHHHHHHHHHhCC--C--EEEECChH-H
Confidence 67889999776555 7888888766553 2 2211111111112356788999999999987 5 56666554 5
Q ss_pred HHHHHHhhcC---CCCC--CeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcC
Q 010538 115 ALKLVGEAFP---WSHQ--SSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKG 189 (508)
Q Consensus 115 al~~~~~~l~---~~~g--~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~ 189 (508)
|+..++..+. ..++ +.|+.....|+++.......+ .+.+++.+|.. |+++++
T Consensus 117 a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~-~~~~v~~~~~~--------------------d~~~l~-- 173 (402)
T PRK07505 117 AHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICA-DETEVETIDHN--------------------DLDALE-- 173 (402)
T ss_pred HHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhh-cCCeEEEeCCC--------------------CHHHHH--
Confidence 6665553321 2222 345555688887654333332 35677777753 355566
Q ss_pred CCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC---C--C-----C
Q 010538 190 ASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT---Q--P-----P 259 (508)
Q Consensus 190 ~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~---~--~-----~ 259 (508)
+.+ .+++++++++.++|++|.+.|+++|.++|++ +|+++|+|++|+++. . . .
T Consensus 174 ~~~------~~~~~~~vl~~p~~~~G~~~~~~~i~~l~~~------------~~~~li~DEa~~~~~~g~~g~~~~~~~~ 235 (402)
T PRK07505 174 DIC------KTNKTVAYVADGVYSMGGIAPVKELLRLQEK------------YGLFLYIDDAHGLSIYGKNGEGYVRSEL 235 (402)
T ss_pred HHH------hcCCCEEEEEecccccCCcCCHHHHHHHHHH------------cCCEEEEECcccccCcCCCCCchHHHHc
Confidence 433 2346788888999999999999999999998 899999999986421 1 1 1
Q ss_pred CCCCCCCcEEEEeccccccCCCcceEEEE-echhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHH
Q 010538 260 DLSKYPVDFVVMSFYKIFGYPTGLGALIM-RNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIAS 338 (508)
Q Consensus 260 d~~~~~~D~~~~S~~K~~g~P~G~G~l~~-~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~ 338 (508)
+....+..+++.|++|.++ .+| |++.+ +++..+.+.....+ . ...++++..++++
T Consensus 236 ~~~~~d~~i~~~s~sK~~~-~~G-g~~~~~~~~~~~~~~~~~~~---------------------~-t~~~~~~~~a~aa 291 (402)
T PRK07505 236 DYRLNERTIIAASLGKAFG-ASG-GVIMLGDAEQIELILRYAGP---------------------L-AFSQSLNVAALGA 291 (402)
T ss_pred CCCCCCCeEEEEechhhhh-ccC-eEEEeCCHHHHHHHHHhCCC---------------------c-eeCCCCCHHHHHH
Confidence 1101234578889999998 445 77765 55665555432111 1 1235566777888
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHH
Q 010538 339 IRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVE 418 (508)
Q Consensus 339 l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~ 418 (508)
+.++++.+.+..+.+..+++.+..+.+...+... ..+. -..+.++.+++. .....+.
T Consensus 292 ~~a~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------------~~g~------~~~i~~~~~~~~----~~~~~~~ 348 (402)
T PRK07505 292 ILASAEIHLSEELDQLQQKLQNNIALFDSLIPTE-------------QSGS------FLPIRLIYIGDE----DTAIKAA 348 (402)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHhc-------------CCCC------CCCEEEEEeCCH----HHHHHHH
Confidence 8888886655555555555444444332222110 1111 133334433221 1123578
Q ss_pred HHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 419 KLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 419 ~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
+.|.++||.+++......+. ..+++||+++..+|.||++++++.|+++
T Consensus 349 ~~l~~~Gi~v~~~~~p~~~~--------------------------------~~~~lRi~~~~~~t~eei~~~~~~l~~~ 396 (402)
T PRK07505 349 KQLLDRGFYTSPVFFPVVAK--------------------------------GRAGLRIMFRASHTNDEIKRLCSLLKEI 396 (402)
T ss_pred HHHHHCCCeEeeecCCCCCC--------------------------------CCceEEEecCccCCHHHHHHHHHHHHHH
Confidence 88889999998753211110 1368999999999999999999999987
Q ss_pred hh
Q 010538 499 VN 500 (508)
Q Consensus 499 ~~ 500 (508)
++
T Consensus 397 l~ 398 (402)
T PRK07505 397 LD 398 (402)
T ss_pred HH
Confidence 64
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-19 Score=188.57 Aligned_cols=168 Identities=11% Similarity=0.079 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHH-HHHHhcCCeEEEEccCC
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIR-EYALSQGAAAFAIDVEE 162 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~-~~~~~~G~~v~~v~~~~ 162 (508)
...+++++.+++++|++.. ++++|++.|+.+++.++ +++|++||++...|+....+. ..+...|++++.++.+
T Consensus 65 p~~~~le~~lA~l~g~~~~----i~~~sG~~Al~~~l~~l-l~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~- 138 (403)
T PRK07503 65 PTLALLEQRMASLEGGEAA----VALASGMGAITATLWTL-LRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLT- 138 (403)
T ss_pred chHHHHHHHHHHHhCCCcE----EEEcCHHHHHHHHHHHH-cCCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCCC-
Confidence 3477889999999999643 45556778999999887 789999999988786655543 3466789999998863
Q ss_pred ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC
Q 010538 163 AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG 242 (508)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~ 242 (508)
|+++++ +++ +++|++|++++++||+|.+.|+++|.++|++ +
T Consensus 139 -------------------d~~~l~--~~i------~~~tklV~le~p~NPtG~~~di~~I~~la~~------------~ 179 (403)
T PRK07503 139 -------------------DPAALK--AAI------SDKTRMVYFETPANPNMRLVDIAAVAEIAHG------------A 179 (403)
T ss_pred -------------------CHHHHH--Hhc------CccCcEEEEeCCCCCCCeeeCHHHHHHHHHH------------c
Confidence 256677 444 4678999999999999999999999999998 8
Q ss_pred CeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhc
Q 010538 243 RWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLK 297 (508)
Q Consensus 243 g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~ 297 (508)
|+++++|++++.+.....+ ..++|+++.|++|+++++.+ .|+++.++++.++++
T Consensus 180 gi~lIvD~a~a~~~~~~~l-~~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~ 235 (403)
T PRK07503 180 GAKVVVDNTYCTPYLQRPL-ELGADLVVHSATKYLGGHGDITAGLVVGGKALADRIR 235 (403)
T ss_pred CCEEEEECCCcccccCCch-hhCCCEEEccccccccCCCceeEEEEEcCHHHHHHHH
Confidence 9999999999876543333 35799999999999995543 588887777766554
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-19 Score=188.06 Aligned_cols=315 Identities=13% Similarity=0.037 Sum_probs=206.2
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHH-HHHHhcCCeEEEEccCCc
Q 010538 85 IVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIR-EYALSQGAAAFAIDVEEA 163 (508)
Q Consensus 85 ~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~-~~~~~~G~~v~~v~~~~~ 163 (508)
...++++.+|++.|.+ ++++++|++.|+.+++.++ .++|++|+++...|++..... ..++..|++++.++..
T Consensus 65 ~~~~Le~~iA~~~g~~----~~l~~~sG~~Ai~~al~~l-l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~-- 137 (400)
T PRK06234 65 TSTEVENKLALLEGGE----AAVVAASGMGAISSSLWSA-LKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTS-- 137 (400)
T ss_pred cHHHHHHHHHHHhCCC----cEEEEcCHHHHHHHHHHHH-hCCCCEEEEecCccchHHHHHHHHHhhCCeEEEEECCC--
Confidence 3678899999999975 3577788888999888887 688999999998888766543 4566789999998753
Q ss_pred cCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC-
Q 010538 164 VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG- 242 (508)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~- 242 (508)
|+++++ +++ +++|++|++++++||||.+.|+++|.++|++ +
T Consensus 138 ------------------d~e~l~--~~i------~~~tklI~iesP~NPtG~v~dl~~I~~la~~------------~~ 179 (400)
T PRK06234 138 ------------------NLEEVR--NAL------KANTKVVYLETPANPTLKVTDIKAISNIAHE------------NN 179 (400)
T ss_pred ------------------CHHHHH--HHh------ccCCeEEEEECCCCCCCCcCCHHHHHHHHHh------------cC
Confidence 356677 444 4678999999999999999999999999997 5
Q ss_pred -CeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhc
Q 010538 243 -RWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRR 319 (508)
Q Consensus 243 -g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~ 319 (508)
|+++++|++++.+.....+ ..++|+++.|++|+++++.. .|+++.++++++.++....
T Consensus 180 ~~i~livDea~~~~~~~~~l-~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~------------------ 240 (400)
T PRK06234 180 KECLVFVDNTFCTPYIQRPL-QLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGI------------------ 240 (400)
T ss_pred CCCEEEEECCCCchhcCCch-hhCCcEEEeeccccccCCCCceeEEEEecHHHHHHHHHHHH------------------
Confidence 9999999999877543333 34799999999999985532 4899988887665542200
Q ss_pred cCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceE-EEecCCCCCccc-----
Q 010538 320 QGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVC-TIYGTYTSEVSY----- 393 (508)
Q Consensus 320 ~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~-~~~~~~~~~~~~----- 393 (508)
......+.+....+.+...++ .++.+.++..+.++++.+.|++.+ .+ +++-|.-. ..+
T Consensus 241 ----~~~~g~~l~p~~a~l~~~~l~-----tl~~r~~~~~~na~~~a~~L~~~~------~V~~V~~p~l~-~~~~~~~~ 304 (400)
T PRK06234 241 ----KDMTGSVIGPFEAFLIIRGMK-----TLQIRMEKHCKNAMKVAKFLESHP------AVEKVYYPGLE-SFEYYELA 304 (400)
T ss_pred ----HHhcCCCCCHHHHHHHHhccC-----cHHHHHHHHHHHHHHHHHHHHcCC------CeeEEECCCCC-CCCcHHHH
Confidence 000112222222222222332 245566677788888888888763 34 33333210 000
Q ss_pred ----CCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhh----hhhhhcCCccCCCcc
Q 010538 394 ----HDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDL----LSNIEAGHVCWDDND 465 (508)
Q Consensus 394 ----~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~----~~~~~~~~~~~~~~~ 465 (508)
...+++++|.+++.. . ....+.+.|+..++.++.|...+.-. +++. -.++.+ .+..|
T Consensus 305 ~~~~~~~g~l~s~~l~~~~-~--~~~~f~~~l~~~~~~~s~G~~~sl~~-~p~~-~~~~~~~~~~~~~~g---------- 369 (400)
T PRK06234 305 KKQMSLPGAMISFELKGGV-E--EGKVVMNNVKLATLAVSLGDAETLIQ-HPAS-MTHSPYTAEERKEAG---------- 369 (400)
T ss_pred HHhCCCCCceEEEEecCcH-H--HHHHHHHhCCcceEeccCCCCCceec-CCcc-CCCCCCCHHHHHhcC----------
Confidence 123789999997421 1 11346677777777777774332210 0000 001111 11222
Q ss_pred ccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 466 IIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 466 ~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
..++.||+|++.-+.++=++.+.++|..+
T Consensus 370 ----i~~~l~R~svGlE~~~dl~~dl~~al~~~ 398 (400)
T PRK06234 370 ----ISDGLVRLSVGLEDVDDIIADLKQALDLI 398 (400)
T ss_pred ----CCCCeEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 34789999999877666666666666654
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.7e-20 Score=189.64 Aligned_cols=217 Identities=13% Similarity=0.076 Sum_probs=156.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHH-HHHHHhcCCeEEEEccCC
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGI-REYALSQGAAAFAIDVEE 162 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~-~~~~~~~G~~v~~v~~~~ 162 (508)
...+++++.+|+++|.+.. ++++|++.|+.+++.++ .++|++|+++...|++.... ...+...|+++..++.+
T Consensus 59 p~~~~le~~lA~l~g~~~a----v~~~sG~~Ai~~~l~al-~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~~- 132 (391)
T TIGR01328 59 PTVSNLEGRIAFLEGTEAA----VATSSGMGAIAATLLTI-LKAGDHLISDECLYGCTFALLEHALTKFGIQVDFINMA- 132 (391)
T ss_pred chHHHHHHHHHHHhCCCcE----EEECCHHHHHHHHHHHH-hCCCCEEEEecCcchHHHHHHHHHHhcCCeEEEEECCC-
Confidence 3467789999999998743 66677778999998888 68899999998888765544 34456689999998764
Q ss_pred ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC
Q 010538 163 AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG 242 (508)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~ 242 (508)
|+++++ +++ +++|++|++++++||+|.+.|+++|.++|++ +
T Consensus 133 -------------------d~e~l~--~~i------~~~tklV~le~p~Np~G~v~dl~~I~~la~~------------~ 173 (391)
T TIGR01328 133 -------------------IPEEVK--AHI------KDNTKIVYFETPANPTMKLIDMERVCRDAHS------------Q 173 (391)
T ss_pred -------------------CHHHHH--Hhh------ccCCeEEEEECCCCCCCcccCHHHHHHHHHH------------c
Confidence 256667 444 4678999999999999999999999999998 8
Q ss_pred CeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhcc
Q 010538 243 RWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQ 320 (508)
Q Consensus 243 g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~ 320 (508)
|+++++|++++.+.....+ ..++|+++.|++|+++++.+ .|+++.+++++++++....
T Consensus 174 gi~livD~a~a~~~~~~~~-~~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~------------------- 233 (391)
T TIGR01328 174 GVKVIVDNTFATPMLTNPV-ALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGI------------------- 233 (391)
T ss_pred CCEEEEECCCchhccCCch-hcCCCEEEccccccccCCCCceEEEEEcCHHHHHHHHHHHH-------------------
Confidence 9999999999876543333 35799999999999996643 4777777777665543210
Q ss_pred CccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhccc
Q 010538 321 GVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLR 373 (508)
Q Consensus 321 ~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~ 373 (508)
.....+..+....+.+...++ .+..+.++..++++++.+.|++.+
T Consensus 234 ---~~~~g~~l~~~~a~l~l~~L~-----tl~~r~~~~~~na~~la~~L~~~p 278 (391)
T TIGR01328 234 ---KDMTGSVISPFDAWLILRGLK-----TLNIRMKRHSENAMKVAEYLKSHP 278 (391)
T ss_pred ---HhCCCCCCCcHHHHHHHhCcC-----cHHHHHHHHHHHHHHHHHHHHhCC
Confidence 000011222221221122222 245567778888999999998874
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-19 Score=187.31 Aligned_cols=214 Identities=11% Similarity=0.025 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA 163 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~ 163 (508)
...+++++.+|+++|.+ ++++++|++.|+.+++.++ +++|++|+++...|+++..+.+.++..|+++..++.
T Consensus 53 p~~~~lE~~lA~l~g~~----~~l~~~sG~~Ai~~~l~~l-l~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~~--- 124 (385)
T PRK08574 53 PTLRPLEEALAKLEGGV----DALAFNSGMAAISTLFFSL-LKAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAYP--- 124 (385)
T ss_pred ccHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHH-hCCCCEEEEcCCCchhHHHHHHHhhccCcEEEEECC---
Confidence 34677899999999975 3566778889999999888 788999999999999887776655667888877643
Q ss_pred cCccccccccccccccccchhhhhcCCCCCCCCCCCC-CceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC
Q 010538 164 VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGD-AYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG 242 (508)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~-~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~ 242 (508)
++++++ +++ ++ +|++|++++++||||.+.|+++|.++|++ +
T Consensus 125 ------------------d~~~l~--~~i------~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~------------~ 166 (385)
T PRK08574 125 ------------------STEDII--EAI------KEGRTKLVFIETMTNPTLKVIDVPEVAKAAKE------------L 166 (385)
T ss_pred ------------------CHHHHH--Hhc------CccCceEEEEECCCCCCCEecCHHHHHHHHHH------------c
Confidence 245566 444 34 78999999999999999999999999998 9
Q ss_pred CeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc-c-eEEEEe-chhHhhhccccccCceEEecccchhhhhhc
Q 010538 243 RWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG-L-GALIMR-NDAAKLLKNTYFSGGTVAASIADIDFVKRR 319 (508)
Q Consensus 243 g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G-~-G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~ 319 (508)
|+++++|++++.|.....+ +.++|+++.|++|++++|.. + |+++.+ +++.++++...
T Consensus 167 gi~livD~t~a~~~~~~~l-~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~------------------- 226 (385)
T PRK08574 167 GAILVVDNTFATPLLYRPL-RHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWR------------------- 226 (385)
T ss_pred CCEEEEECCCCccccCChh-hhCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHH-------------------
Confidence 9999999999877542222 46899999999999987754 3 656664 44444433210
Q ss_pred cCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhccc
Q 010538 320 QGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLR 373 (508)
Q Consensus 320 ~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~ 373 (508)
+...+..+....+.+..+++. +..+.++..+++.++.+.|++.+
T Consensus 227 -----~~~g~~~~p~~a~l~l~~l~t-----L~~R~~~~~~na~~la~~L~~~p 270 (385)
T PRK08574 227 -----RRLGTIMQPFEAYLVLRGLKT-----LEVRFERQCRNAMAIAEFLSEHP 270 (385)
T ss_pred -----HhcCCCCCHHHHHHHHcccCc-----HHHHHHHHHHHHHHHHHHHHcCC
Confidence 011112222222222223332 45566667778888888888763
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-19 Score=189.34 Aligned_cols=320 Identities=16% Similarity=0.078 Sum_probs=198.9
Q ss_pred hhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHH-HHHHhcCCeEEEEc
Q 010538 81 ATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIR-EYALSQGAAAFAID 159 (508)
Q Consensus 81 ~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~-~~~~~~G~~v~~v~ 159 (508)
......+++++++|++.|++. .++++++++|+.+++.++ .++|++|+++...|++....+ ..+...|+++..++
T Consensus 61 ~~~p~~~~le~~lA~l~g~~~----~i~~ssG~~Ai~~~l~al-l~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd 135 (398)
T PRK08249 61 NTNPTVQAFEEKVRILEGAEA----ATAFSTGMAAISNTLYTF-LKPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCE 135 (398)
T ss_pred CCChHHHHHHHHHHHHhCCCe----EEEeCChHHHHHHHHHHh-cCCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEcC
Confidence 345567889999999999753 355556678999998888 688999999998888765544 34667899888776
Q ss_pred cCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCC
Q 010538 160 VEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPF 239 (508)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~ 239 (508)
. . |+++++ +++ +++|++|++++++||||.+.|+++|.++|++
T Consensus 136 ~-----~---------------d~e~l~--~~i------~~~tklV~ie~p~NPtg~v~dl~~I~~la~~---------- 177 (398)
T PRK08249 136 T-----G---------------DHEQIE--AEI------AKGCDLLYLETPTNPTLKIVDIERLAAAAKK---------- 177 (398)
T ss_pred C-----C---------------CHHHHH--Hhc------CCCCeEEEEECCCCCCCccCCHHHHHHHHHH----------
Confidence 4 1 467777 554 4678999999999999999999999999998
Q ss_pred CCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc-c-eEEEEechhHhhhccccccCceEEecccchhhhh
Q 010538 240 SKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG-L-GALIMRNDAAKLLKNTYFSGGTVAASIADIDFVK 317 (508)
Q Consensus 240 ~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G-~-G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~ 317 (508)
+|+++++|++++.+.....+ ..++|+++.|++|+++++.. + |+++.++++++++....
T Consensus 178 --~gi~livD~t~a~~~~~~~l-~~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~----------------- 237 (398)
T PRK08249 178 --VGALVVVDNTFATPINQNPL-ALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYR----------------- 237 (398)
T ss_pred --cCCEEEEECCcCccccCCch-hhCCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHHH-----------------
Confidence 99999999999865433222 35799999999999994432 3 66666666665554321
Q ss_pred hccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEE-EecCCCCCccc---
Q 010538 318 RRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCT-IYGTYTSEVSY--- 393 (508)
Q Consensus 318 ~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~-~~~~~~~~~~~--- 393 (508)
....++.+....+.+...++. +....++..+.++.+.+.|++.+ .++ ++-|.-. ..+
T Consensus 238 -------~~~g~~~s~~~a~l~l~~l~t-----L~~R~~~~~~na~~la~~L~~~p------~v~~V~yP~l~-~~~~~~ 298 (398)
T PRK08249 238 -------EINGATMDPMSAYLILRGMKT-----LKLRVRQQQESAMALAKYLQTHP------KVEAVYYPGLE-THPNHE 298 (398)
T ss_pred -------HhcCCCCCHHHHHHHHhCcch-----HHHHHHHHHHHHHHHHHHHHcCC------CeeEEECCCCC-CCccHH
Confidence 111223333333333334443 34555677788888888888763 343 3333211 000
Q ss_pred ------CCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCcccc
Q 010538 394 ------HDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDII 467 (508)
Q Consensus 394 ------~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 467 (508)
..-+++++|.+++. .+ ...++...|+--.+.++-|...+.- .+++. ..|+.+.. +.+..
T Consensus 299 ~~~~~~~g~g~~~sf~~~~~--~~-~~~~f~~~l~l~~~~~s~G~~~sl~-~~~~~-~~~~~~~~----------~~~~~ 363 (398)
T PRK08249 299 IAKAQMRGFGGILSFVLKGG--MD-TVKRLLPKLRYAHRAANLGAVETIY-GPART-TSHVENTL----------EERAA 363 (398)
T ss_pred HHHhhCCCCCceEEEEEcCC--HH-HHHHHHHhCCcceEccCCCCCCcee-eCCcc-cccccCCH----------HHHHh
Confidence 01378999999642 11 1123444444334444444321110 00000 01111111 00001
Q ss_pred CCCCCceEEEecCCCCCHHHHHHHHHhhhh
Q 010538 468 HGKPTGAIRVSFGYMSTFEDAKVNRCSSFD 497 (508)
Q Consensus 468 ~~~~~~~iRis~~~~~t~eev~~l~~~~~~ 497 (508)
.+..++.||+|++.-+-++=++.+.++|..
T Consensus 364 ~gi~~~liR~svGlE~~~dl~~dl~~al~~ 393 (398)
T PRK08249 364 LGIPEGLVRISVGIEDTEDLIADLEQAFAH 393 (398)
T ss_pred cCCCCCeEEEEeccCCHHHHHHHHHHHHHH
Confidence 123478999999986655555555555543
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-19 Score=188.26 Aligned_cols=347 Identities=14% Similarity=0.101 Sum_probs=222.2
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+ .+..+|.+++++.+... .. ..+..+........++.+.++++++.+.+ +++|++|+
T Consensus 34 dG~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~-~~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~v~~~~sg 105 (413)
T cd00610 34 DGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLA-KL-----THFSLGFFYNEPAVELAELLLALTPEGLD--KVFFVNSG 105 (413)
T ss_pred CCCEEEEcCccHHhhccCCCCHHHHHHHHHHHH-hC-----cCccCcccCCHHHHHHHHHHHHhCCCCCC--EEEEcCcH
Confidence 5677888765 33357888888766542 11 11111111345678899999999998777 89999999
Q ss_pred HHHHHHHHhhcC-CCCCCeEEEecccccc-hHHHHHHHHh---------cCCeEEEEccCCccCcccccccccccccccc
Q 010538 113 TAALKLVGEAFP-WSHQSSYMYTMENHNS-VLGIREYALS---------QGAAAFAIDVEEAVDNDGLSESLVTSTKISL 181 (508)
Q Consensus 113 t~al~~~~~~l~-~~~g~~vl~~~~~h~s-~~~~~~~~~~---------~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~ 181 (508)
++|+..++..+. ..+++.|++.+..|.+ ...+...... ....+..+|.+..... ......
T Consensus 106 sea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 176 (413)
T cd00610 106 TEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRP---------PAELAD 176 (413)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccc---------hhhHHH
Confidence 999999888763 3557777777654444 3333332211 0123555665421100 000122
Q ss_pred chhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEeccccC-CC
Q 010538 182 LPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC-VT 256 (508)
Q Consensus 182 d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~-g~ 256 (508)
|++.++ +.+.+. .+++++|+++.+++++|.+.| +++|.++|++ +|+++++|++++. |.
T Consensus 177 d~~~l~--~~l~~~---~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~------------~~~~li~Dev~~g~g~ 239 (413)
T cd00610 177 DLEALE--EALEEH---PEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRK------------HGILLIADEVQTGFGR 239 (413)
T ss_pred HHHHHH--HHHhcC---CCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHH------------cCCEEEEeccccCCCc
Confidence 567777 555321 246789999999999999998 8888888887 9999999999873 21
Q ss_pred C----CCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhh--ccccccCceEEecccchhhhhhccCccccccCCC
Q 010538 257 Q----PPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLL--KNTYFSGGTVAASIADIDFVKRRQGVEELFEDGT 330 (508)
Q Consensus 257 ~----~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt 330 (508)
. ..+......|++ |++|++++...+|++++++++++.+ ..... ....+
T Consensus 240 ~g~~~~~~~~~~~~d~~--t~sK~l~~g~~~g~~~~~~~~~~~~~~~~~~~------------------------~~t~~ 293 (413)
T cd00610 240 TGKMFAFEHFGVEPDIV--TLGKGLGGGLPLGAVLGREEIMDAFPAGPGLH------------------------GGTFG 293 (413)
T ss_pred CcchhhHhhcCCCCCeE--EEcccccCccccEEEEEcHHHHHhhccCCCCC------------------------CCCCC
Confidence 1 112222345765 4559888433389999998887765 11100 01123
Q ss_pred CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCC
Q 010538 331 ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGS 410 (508)
Q Consensus 331 ~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 410 (508)
.+...+++..++++++.+ +.+.+++.++.+++++.|+++.. ...+..... ..++++++.+.+....
T Consensus 294 ~~~~~~~a~~a~l~~l~~---~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~~~~~------~~g~~~~~~~~~~~~~ 359 (413)
T cd00610 294 GNPLACAAALAVLEVLEE---EGLLENAAELGEYLRERLRELAE-----KHPLVGDVR------GRGLMIGIELVKDRAT 359 (413)
T ss_pred cCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHh-----hCCcEEEee------cCceEEEEEEecCCCc
Confidence 345556777778888765 46778899999999999887621 001111111 1278888888653110
Q ss_pred ----ccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHH
Q 010538 411 ----WFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFE 486 (508)
Q Consensus 411 ----~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~e 486 (508)
......+.+.|.++||.+.++. .+.+|+++++.+|++
T Consensus 360 ~~~~~~~~~~~~~~l~~~gv~v~~~~---------------------------------------~~~lR~~~~~~~t~~ 400 (413)
T cd00610 360 KPPDKELAAKIIKAALERGLLLRPSG---------------------------------------GNVIRLLPPLIITEE 400 (413)
T ss_pred CCcchHHHHHHHHHHHHCCeEEeecC---------------------------------------CCEEEEECCCcCCHH
Confidence 0123457788889999998752 367999999999999
Q ss_pred HHHHHHHhhhhh
Q 010538 487 DAKVNRCSSFDF 498 (508)
Q Consensus 487 ev~~l~~~~~~~ 498 (508)
|++++++.+.+.
T Consensus 401 ~i~~~~~~l~~~ 412 (413)
T cd00610 401 EIDEGLDALDEA 412 (413)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-19 Score=186.52 Aligned_cols=162 Identities=11% Similarity=0.027 Sum_probs=132.0
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE 162 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~ 162 (508)
....+++++.+|++.|++.. +++++| +.|+..++.++ +++|++||++...|++.......+++.|++++.++..
T Consensus 46 ~p~~~~lE~~la~leg~~~~---v~~ssG-~~Ai~~~l~al-l~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~~~- 119 (397)
T PRK05939 46 TPTTAALEAKITKMEGGVGT---VCFATG-MAAIAAVFLTL-LRAGDHLVSSQFLFGNTNSLFGTLRGLGVEVTMVDAT- 119 (397)
T ss_pred CHHHHHHHHHHHHHhCCCeE---EEeCCH-HHHHHHHHHHH-cCCCCEEEECCCccccHHHHHHHHHhcCCEEEEECCC-
Confidence 34577889999999998754 665555 78999999888 7899999999999988766666677789999999863
Q ss_pred ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC
Q 010538 163 AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG 242 (508)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~ 242 (508)
|+++++ +++ +++|++|++++++||||.+.|+++|.++||+ +
T Consensus 120 -------------------d~e~l~--~~l------~~~tklV~vesp~NptG~v~dl~~I~~la~~------------~ 160 (397)
T PRK05939 120 -------------------DVQNVA--AAI------RPNTRMVFVETIANPGTQVADLAGIGALCRE------------R 160 (397)
T ss_pred -------------------CHHHHH--HhC------CCCCeEEEEECCCCCCCCHHhHHHHHHHHHH------------c
Confidence 356777 444 5789999999999999999999999999998 9
Q ss_pred CeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc-ceEEEEec
Q 010538 243 RWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG-LGALIMRN 290 (508)
Q Consensus 243 g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G-~G~l~~~~ 290 (508)
|+++++|++++.+. .++..+.++|+++.|+||+++++.+ +|++++.+
T Consensus 161 gi~livD~t~a~~~-~~~~~~~gaDivv~S~sK~~~g~g~~igg~v~~~ 208 (397)
T PRK05939 161 GLLYVVDNTMTSPW-LFRPKDVGASLVINSLSKYIAGHGNALGGAVTDT 208 (397)
T ss_pred CCEEEEECCccccc-ccCccccCCEEEEecCeecccCCCCeEEEEEecC
Confidence 99999999997764 3556667899999999999995533 57766643
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.7e-19 Score=196.59 Aligned_cols=329 Identities=9% Similarity=-0.003 Sum_probs=219.8
Q ss_pred hhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCC-------CCCCeEEEecccccchHHHHHHHHhc
Q 010538 79 SLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPW-------SHQSSYMYTMENHNSVLGIREYALSQ 151 (508)
Q Consensus 79 ~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~-------~~g~~vl~~~~~h~s~~~~~~~~~~~ 151 (508)
.....+++.+..+++++++|.+.. -+..++++.|-.+.+.++.. .+..+|+++...|.+.-.... ..
T Consensus 525 sqG~lq~i~elq~~l~eltGmd~~---Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPasa~---~~ 598 (939)
T TIGR00461 525 VEGYQELIAQLEKWLCSITGFDAI---SLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPASAA---MA 598 (939)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCCc---ccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHHHH---HC
Confidence 344678899999999999999844 34555555554433322211 234689999999977755533 45
Q ss_pred CCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC-HHHHHHHHcCC
Q 010538 152 GAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN-LDLINIMKKNP 230 (508)
Q Consensus 152 G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~-i~~i~~l~~~~ 230 (508)
|++++.||.+.++.+ |+++++ +.+++ .+++|++|++++++| +|.+.| +++|+++||+
T Consensus 599 G~~Vv~V~~d~~G~i---------------Dle~L~--~~i~~---~~~~taaV~iT~pst-~G~~e~~I~eI~~iah~- 656 (939)
T TIGR00461 599 GMQVVPVNCDQDGNI---------------DLVDLK--NKAEQ---HGDELAAVMVTYPST-HGVFEPTIQHACDIVHS- 656 (939)
T ss_pred CCEEEEeccCCCCCc---------------CHHHHH--HHHhh---cCCceEEEEEEeCCc-CceecccHHHHHHHHHH-
Confidence 999999999877877 688888 66643 246899999999998 799988 9999999998
Q ss_pred ccccccCCCCCCCeEEEEeccccCCCCCC-CCCCCCCcEEEEeccccccCC-----CcceEEEEechhHhhhccccccCc
Q 010538 231 ERILEISPFSKGRWMVLIDAAKGCVTQPP-DLSKYPVDFVVMSFYKIFGYP-----TGLGALIMRNDAAKLLKNTYFSGG 304 (508)
Q Consensus 231 ~~~~~~~~~~~~g~~vivD~a~~~g~~~~-d~~~~~~D~~~~S~~K~~g~P-----~G~G~l~~~~~~~~~l~~~~~g~~ 304 (508)
+|.++++|+++..+...+ +..++++|++++|.||+|++| +|+|++.+++++ .|...|..
T Consensus 657 -----------~G~~v~VDgAq~~al~~l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L----~~~lPg~~ 721 (939)
T TIGR00461 657 -----------FGGQVYLDGANMNAQVGLTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHL----IPFLPKHD 721 (939)
T ss_pred -----------cCCEEEEEecChhhCCCCCCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhc----hhhcCCCc
Confidence 899999999997744444 446789999999999977734 457999999764 44444432
Q ss_pred eEEecccchhhhhhccCccccccC--CCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEE
Q 010538 305 TVAASIADIDFVKRRQGVEELFED--GTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCT 382 (508)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~--gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~ 382 (508)
.+...... . + ...-+... ++-+..-+...+..+.++...|+.+..+....+++|+.+.|++. ++
T Consensus 722 v~~t~d~~-g---r--eq~Iga~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~~--------~~ 787 (939)
T TIGR00461 722 VVSMITGI-G---G--SKSIGSVSAAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKDH--------YP 787 (939)
T ss_pred ccccccCC-C---C--ccccccccccccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcc--------Cc
Confidence 11100000 0 0 00001111 22222333344556677777788999999999999999999873 44
Q ss_pred EecCCCCCcccCCCCceEEEEeeCC-CCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccC
Q 010538 383 IYGTYTSEVSYHDTGSMVSFNLKRP-DGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCW 461 (508)
Q Consensus 383 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 461 (508)
+.-+... ....+-+.|+++.. +...+...++.+.|.+.|+..-. ..+ +
T Consensus 788 ~l~~~~~----~~~~hEfv~~~~~~~~~~g~~~~dIakrL~d~G~hapt-~~~-p------------------------- 836 (939)
T TIGR00461 788 ILFVGTL----KHVAHECILDLRPLKAKTGIEAIDVAKRLQDYGFHAPT-LSF-P------------------------- 836 (939)
T ss_pred ccccCCC----CceeEEEEEeccchhhhcCCCHHHHHHHHHhCCeeccc-cCC-c-------------------------
Confidence 4433211 00134455665531 11124567899999999998543 211 1
Q ss_pred CCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhhh
Q 010538 462 DDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQF 504 (508)
Q Consensus 462 ~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~~ 504 (508)
..+.+=|.+.--+|.+|+|+++++|..+.+.++.
T Consensus 837 ---------v~g~lmiepTE~eskeelD~f~~al~~I~~e~~~ 870 (939)
T TIGR00461 837 ---------VPGTLMVEPTESESLEELDRFCDAMIAIKEEINA 870 (939)
T ss_pred ---------cCCeEEEEeeccCCHHHHHHHHHHHHHHHHHHHH
Confidence 0345555555578999999999999988776654
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-19 Score=188.33 Aligned_cols=163 Identities=10% Similarity=0.020 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEEccCC
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDVEE 162 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~~~ 162 (508)
...+.+++.+|++.|++.. +++++++.|+.+++.++ .++|++|+++...|.+...... .+.+.|++++.++ +.
T Consensus 69 p~~~~Le~~lA~l~g~~~a----v~~sSG~aAi~~al~al-l~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-d~ 142 (436)
T PRK07812 69 PTQDVVEQRIAALEGGVAA----LLLASGQAAETFAILNL-AGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVE-DP 142 (436)
T ss_pred chHHHHHHHHHHHhCCCeE----EEEccHHHHHHHHHHHH-hCCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEEC-CC
Confidence 4466889999999998743 66677788999999888 6889999999888877665544 3566788888885 21
Q ss_pred ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC
Q 010538 163 AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG 242 (508)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~ 242 (508)
. |+++++ +++ +++|++|++.+++||+|.+.|+++|.++||+ +
T Consensus 143 ---~---------------d~e~l~--~ai------~~~tklV~ie~~sNp~G~v~Dl~~I~~la~~------------~ 184 (436)
T PRK07812 143 ---D---------------DLDAWR--AAV------RPNTKAFFAETISNPQIDVLDIPGVAEVAHE------------A 184 (436)
T ss_pred ---C---------------CHHHHH--HhC------CCCCeEEEEECCCCCCCeecCHHHHHHHHHH------------c
Confidence 1 366777 444 5789999999999999999999999999998 8
Q ss_pred CeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc-ceEEEEech
Q 010538 243 RWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG-LGALIMRND 291 (508)
Q Consensus 243 g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G-~G~l~~~~~ 291 (508)
|++++||++++.+.....+ ++++|+++.|+||++|++.+ +|.+++...
T Consensus 185 gi~liVD~t~a~~~~~~pl-~~GaDivv~S~tK~lgg~G~~i~G~vv~~~ 233 (436)
T PRK07812 185 GVPLIVDNTIATPYLIRPL-EHGADIVVHSATKYLGGHGTAIAGVIVDGG 233 (436)
T ss_pred CCEEEEECCCcccccCCch-hcCCCEEEEecccccCCCCCeEEEEEEcCC
Confidence 9999999999877654444 56899999999999995533 677777543
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-19 Score=188.42 Aligned_cols=320 Identities=11% Similarity=0.033 Sum_probs=199.6
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HH-HhcCCeEEEEcc
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YA-LSQGAAAFAIDV 160 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~-~~~G~~v~~v~~ 160 (508)
....+++++.+|+++|.+. +++++|+++|+.+++.++ .++|++|+++...|+++...+. .+ +..|++++.++.
T Consensus 75 ~Pt~~~LE~~lA~l~g~~~----~l~~~sG~~Ai~~al~al-~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d~ 149 (418)
T PLN02242 75 NPTVLNLGRQMAALEGTEA----AYCTASGMSAISSVLLQL-CSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFVDI 149 (418)
T ss_pred ChhHHHHHHHHHHHhCCCe----EEEEccHHHHHHHHHHHH-hCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEcCC
Confidence 4457888999999999974 467899999999999998 6899999999877776655432 22 336888877765
Q ss_pred CCccCccccccccccccccccchhhhhcCCCCCCCCCCCC-CceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCC
Q 010538 161 EEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGD-AYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPF 239 (508)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~-~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~ 239 (508)
. |+++++ +++ ++ +|++|++++++||||.+.|+++|.++|++
T Consensus 150 ~--------------------d~e~l~--~~i------~~~~tklV~lesp~NPtG~v~dl~~I~~la~~---------- 191 (418)
T PLN02242 150 T--------------------DLEAVK--KAV------VPGKTKVLYFESISNPTLTVADIPELARIAHE---------- 191 (418)
T ss_pred C--------------------CHHHHH--Hhc------CcCCCEEEEEecCCCCCCcccCHHHHHHHHHH----------
Confidence 3 366777 554 34 58999999999999999999999999998
Q ss_pred CCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhh
Q 010538 240 SKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVK 317 (508)
Q Consensus 240 ~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~ 317 (508)
+|++|++|.+++... .+...+++|+++.|++|+++++.. .|+++.++++++.+.....+
T Consensus 192 --~gi~livDea~~~~~--~~~~~~g~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~--------------- 252 (418)
T PLN02242 192 --KGVTVVVDNTFAPMV--LSPARLGADVVVHSISKFISGGADIIAGAVCGPAELVNSMMDLHHG--------------- 252 (418)
T ss_pred --hCCEEEEECCCCccC--CCHHHcCCcEEEEeCccccCCCCCceEEEEEcCHHHHHHHHHHhhh---------------
Confidence 899999999996433 344455799999999999984532 48888888877665533110
Q ss_pred hccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCC-------
Q 010538 318 RRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSE------- 390 (508)
Q Consensus 318 ~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~------- 390 (508)
.....|....+..+.+ .+.. ...+..+.++..+.++++.+.|++. +++++-|.-..
T Consensus 253 ------~~~~~g~~~~~~~A~l-~~~~---l~tl~~r~~~~~~~a~~la~~L~~~-------~~~V~yP~l~~~p~~~~~ 315 (418)
T PLN02242 253 ------ALMLLGPTMNPKVAFE-LSER---LPHLSLRMKEHCRRAMEYAKRMKEL-------GLKVIYPGLEDHPQHALL 315 (418)
T ss_pred ------hhhccCCCCCHHHHHH-HHcC---CCcHHHHHHHHHHHHHHHHHHHHhC-------CCEEECCCCCCCccHHHH
Confidence 0011232222222221 1211 1235666778889999999999887 35555443000
Q ss_pred --cc--cCCCCceEEEEeeCCCCCccCHHHHHHHHhhC----CCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCC
Q 010538 391 --VS--YHDTGSMVSFNLKRPDGSWFGYREVEKLASLS----GIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWD 462 (508)
Q Consensus 391 --~~--~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~----gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 462 (508)
.- ...-+++++|.+.+.+ . ...+.+.|+-- .+.++.|...+.-. +++. -.++.+-.
T Consensus 316 ~~~~~~~~g~g~~~sf~l~~~~--~--~~~f~~~l~~~~~~~~~~~slG~~~sl~~-~p~~-~~~~~~~~---------- 379 (418)
T PLN02242 316 KSMANKGYGFGGLLCLDMDTEE--R--ANRLMRYLQNSTQFGFMAVSLGYYETLMS-CSGS-STSSELDP---------- 379 (418)
T ss_pred HHhcccCCCceeEEEEEECCHH--H--HHHHHHHhhcccccceeeecCCCCCceee-CCCc-cccccCCH----------
Confidence 00 0013789999995321 1 12344444322 34455554322210 0000 01111111
Q ss_pred CccccCCCCCceEEEecCCCC-CHHHHHHHHHhhhh
Q 010538 463 DNDIIHGKPTGAIRVSFGYMS-TFEDAKVNRCSSFD 497 (508)
Q Consensus 463 ~~~~~~~~~~~~iRis~~~~~-t~eev~~l~~~~~~ 497 (508)
+.+...+..++.||+|++.-. .++=|+.|-++|..
T Consensus 380 ~~~~~~gi~~~liRlsvGlE~~~~dli~dl~~al~~ 415 (418)
T PLN02242 380 EEKAAAGISPGLVRMSVGYTGTLEQRWSQFEKALSA 415 (418)
T ss_pred HHHHhcCCCCCeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 011112234789999999863 45555555555543
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-19 Score=186.96 Aligned_cols=311 Identities=14% Similarity=0.047 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHH-HHHHHhcCCeEEEEccCC
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGI-REYALSQGAAAFAIDVEE 162 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~-~~~~~~~G~~v~~v~~~~ 162 (508)
...+++++++|++.|.+.. +++ +|+++|+.+++.++ .++|++|+++...|++.... ...++..|++++.++..
T Consensus 61 p~~~~Le~~lA~~~g~~~~---i~~-~sG~~Ai~~~l~al-l~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d~~- 134 (388)
T PRK07811 61 PTRTALEEQLAALEGGAYG---RAF-SSGMAATDCLLRAV-LRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPVDLS- 134 (388)
T ss_pred ccHHHHHHHHHHHhCCCce---EEe-CCHHHHHHHHHHHH-hCCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEeCCC-
Confidence 4477889999999999865 555 45689999999998 78999999999888765443 33445568888877652
Q ss_pred ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC
Q 010538 163 AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG 242 (508)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~ 242 (508)
|+++++ +++ +++|++|++++++||+|.+.|+++|.++|++ +
T Consensus 135 -------------------d~e~l~--~~i------~~~tklV~ie~p~NPtg~~~dl~~I~~la~~------------~ 175 (388)
T PRK07811 135 -------------------DLDAVR--AAI------TPRTKLIWVETPTNPLLSITDIAALAELAHD------------A 175 (388)
T ss_pred -------------------CHHHHH--Hhc------CcCCeEEEEECCCCCcceecCHHHHHHHHHH------------c
Confidence 367777 444 4678999999999999999999999999998 8
Q ss_pred CeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEech-hHhhhccccccCceEEecccchhhhhhc
Q 010538 243 RWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRND-AAKLLKNTYFSGGTVAASIADIDFVKRR 319 (508)
Q Consensus 243 g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~~~ 319 (508)
|+++++|++++.+.....+ ..++|++++|++|++++|.+ .|+++++++ +.+.+.......
T Consensus 176 gi~lIvD~a~a~~~~~~p~-~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~---------------- 238 (388)
T PRK07811 176 GAKVVVDNTFASPYLQQPL-ALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGA---------------- 238 (388)
T ss_pred CCEEEEECCCCccccCCch-hhCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhc----------------
Confidence 9999999999887543333 35799999999999996754 488887654 433333221110
Q ss_pred cCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEE-EecCCCCCccc-----
Q 010538 320 QGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCT-IYGTYTSEVSY----- 393 (508)
Q Consensus 320 ~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~-~~~~~~~~~~~----- 393 (508)
....+....+ .++.-+. .+..+.++..+++..+.+.|++.+ .++ ++-|.-. ..+
T Consensus 239 --------g~~~s~~~a~---l~~~~L~--tl~~R~~~~~~na~~la~~L~~~p------~v~~V~yP~l~-~~~~~~~~ 298 (388)
T PRK07811 239 --------GAVPGPFDAY---LTLRGLK--TLAVRMDRHSENAEAVAEFLAGHP------EVSTVLYPGLP-SHPGHEVA 298 (388)
T ss_pred --------CCCCCHHHHH---HHHhccC--cHHHHHHHHHHHHHHHHHHHHhCC------CeeEEECCCCC-CCchHHHH
Confidence 1111111111 1222111 245666777888999999998874 453 3333211 000
Q ss_pred ----CCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhh-hhhhcCCccCCCccccC
Q 010538 394 ----HDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLL-SNIEAGHVCWDDNDIIH 468 (508)
Q Consensus 394 ----~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~ 468 (508)
..-+++++|.+++. .. ...++...|+-..+.++-|...+.- .+++. ..++.+. +..
T Consensus 299 ~~~~~g~g~~~s~~~~~~-~~--~~~~f~~~l~~~~~~~s~G~~~sl~-~~~~~-~~~~~~~~~~~-------------- 359 (388)
T PRK07811 299 ARQMRGFGGMVSVRLAGG-EE--AARDFCARTKVFTLAESLGGVESLI-EHPSA-MTHASTAGSQL-------------- 359 (388)
T ss_pred HHhcCCCCceEEEEeCCC-HH--HHHHHHHhCCcceeeccCCCCcceE-eCCcc-cCcccCCHhhc--------------
Confidence 01278999999642 11 1123444444334444444321110 00000 0011110 111
Q ss_pred CCCCceEEEecCCCCCHHHHHHHHHhh
Q 010538 469 GKPTGAIRVSFGYMSTFEDAKVNRCSS 495 (508)
Q Consensus 469 ~~~~~~iRis~~~~~t~eev~~l~~~~ 495 (508)
+..++.||+|++.-+.++=++.+.++|
T Consensus 360 gi~~~liR~svGlE~~~dl~~dl~~al 386 (388)
T PRK07811 360 EVPDDLVRLSVGIEDVADLLADLEQAL 386 (388)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHHHHh
Confidence 234789999999866555555555554
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-19 Score=188.25 Aligned_cols=162 Identities=14% Similarity=0.104 Sum_probs=129.6
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHH-HHHHHHhcCCeEEEEcc
Q 010538 82 TCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLG-IREYALSQGAAAFAIDV 160 (508)
Q Consensus 82 ~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~-~~~~~~~~G~~v~~v~~ 160 (508)
.....+.+++.++++.|++ . .|+|++|+ .|+.+++.++ +++|++||++..+|.+... +...+++.|+++..++
T Consensus 67 ~~pt~~~le~~la~l~g~~-~--~v~fsSG~-~Ai~~al~~l-l~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd- 140 (437)
T PRK05613 67 TNPTVEALENRIASLEGGV-H--AVAFASGQ-AAETAAILNL-AGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVE- 140 (437)
T ss_pred cChHHHHHHHHHHHHhCCC-e--EEEeCCHH-HHHHHHHHHh-cCCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEEC-
Confidence 3455788999999999985 3 46766666 6888888887 6889999999999988743 4456777899999997
Q ss_pred CCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCC
Q 010538 161 EEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFS 240 (508)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~ 240 (508)
+. . |+++++ +++ +++|++|++.++.|++|.+.|+++|.++|++
T Consensus 141 ~~---~---------------d~e~l~--~~l------~~~tk~V~~e~~~Np~~~v~di~~I~~la~~----------- 183 (437)
T PRK05613 141 NP---D---------------DPESWQ--AAV------QPNTKAFFGETFANPQADVLDIPAVAEVAHR----------- 183 (437)
T ss_pred CC---C---------------CHHHHH--HhC------CccCeEEEEECCCCCCCcccCHHHHHHHHHH-----------
Confidence 21 1 356777 544 5678999999999999999999999999998
Q ss_pred CCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEe
Q 010538 241 KGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMR 289 (508)
Q Consensus 241 ~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~ 289 (508)
+|+++++|++++.|.. .+..++++|++++|+||+++ +.| +|.+++.
T Consensus 184 -~gi~livD~t~a~g~~-~~p~~~GaDivv~S~~K~l~-G~gd~~gG~vv~ 231 (437)
T PRK05613 184 -NQVPLIVDNTIATAAL-VRPLELGADVVVASLTKFYT-GNGSGLGGVLID 231 (437)
T ss_pred -cCCeEEEECCCccccc-cChHHhCCCEEEeeccceec-CCCcceeEEEEe
Confidence 8999999999988765 34446789999999999999 544 5666663
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-20 Score=175.62 Aligned_cols=339 Identities=15% Similarity=0.106 Sum_probs=239.3
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKL 118 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~ 118 (508)
..++-|-+.+.+.|.....++|.+.-..+ - .|.. ..-..++++.+|+++|-++. +|++++|+++.+
T Consensus 21 ~~~vDLRSDTvT~PTdeMr~am~eA~vgD----d--VyGe----D~tt~rLE~~vA~l~GKEAg----LFv~SGTmgNll 86 (384)
T KOG1368|consen 21 HRSVDLRSDTVTVPTDEMRRAMAEASVGD----D--VYGE----DPTTNRLEQRVAELFGKEAG----LFVPSGTMGNLL 86 (384)
T ss_pred eeccccccccccCChHHHHHHHhhcccCc----c--cccC----CccHHHHHHHHHHHhCccce----eeecccccccHH
Confidence 34566777778887777777765533211 1 1111 11245677899999999877 888999999999
Q ss_pred HHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCC--C
Q 010538 119 VGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPER--D 196 (508)
Q Consensus 119 ~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~--~ 196 (508)
++..-.-++|.+||+.+..|--.+..-......|+.++.+....++.+ ++++++ ++++-. +
T Consensus 87 aIm~Hc~~rg~eii~gd~~HI~~~E~gg~s~l~gv~~~tv~~e~dgtm---------------~ledIe--~~ir~~~GD 149 (384)
T KOG1368|consen 87 AIMVHCHQRGSEIIVGDRAHIHRYEQGGISQLAGVHVRTVKNENDGTM---------------DLEDIE--AAIRVPKGD 149 (384)
T ss_pred HHHHHhcCCCceEEeccchheeehhccChhhhccceeEeeeeCCCCee---------------eHHHHH--HhhcCCCCC
Confidence 988876778999999998886655544444556889999888778877 689999 888622 3
Q ss_pred CCCCCceEEEEeCCCCCCc-cccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC---CCCCCCCCCC--CCcEEE
Q 010538 197 PAGDAYNLFAFPSECNFSG-SRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC---VTQPPDLSKY--PVDFVV 270 (508)
Q Consensus 197 ~~~~~t~lv~~~~~~n~tG-~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~---g~~~~d~~~~--~~D~~~ 270 (508)
...|.|++|++.+-++.+| .++|++++.++.. +|++||+.++.||+--+ -...++++++ ..|.+.
T Consensus 150 ~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~---------lak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSVs 220 (384)
T KOG1368|consen 150 CHMPPTKLICLENTHNNCGGKVLPLEELDRVKA---------LAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVS 220 (384)
T ss_pred ccCCCceEEEeeccccccCceEeeHHHHHHHHH---------HHhccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhhh
Confidence 4567899999988888887 9999998877766 66679999999998543 2233445544 478999
Q ss_pred EeccccccCCCcceEEEEechhHhhhccc--cccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHh
Q 010538 271 MSFYKIFGYPTGLGALIMRNDAAKLLKNT--YFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINS 348 (508)
Q Consensus 271 ~S~~K~~g~P~G~G~l~~~~~~~~~l~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~ 348 (508)
.+++|.+|.|-| .+++.+++++++.+.. ..||+. --+++.+.+ ++--+++
T Consensus 221 iCLSKglgAPVG-SViVG~k~FI~kA~~~RKalGGGm--------------------------RQsGvLaaa-aLval~~ 272 (384)
T KOG1368|consen 221 ICLSKGLGAPVG-SVIVGSKDFIDKARHFRKALGGGM--------------------------RQSGVLAAA-ALVALDE 272 (384)
T ss_pred hhhhccCCCCcc-cEEEccHHHHHHHHHHHHHhcCch--------------------------hHHHHHHHH-HHHHhhc
Confidence 999999998976 7778888888765432 223332 111222222 1111222
Q ss_pred cChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCee
Q 010538 349 LTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQL 428 (508)
Q Consensus 349 ~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v 428 (508)
. +. ..++-++++..+.+.+... +++++..+... .+|+.+.+... .++...+.+.++++||.+
T Consensus 273 ~-~~-~L~~dHk~A~~lAe~~~~~------~~i~v~v~a~e-------tNiv~~~l~q~---~~~~~~l~~~~~k~gi~l 334 (384)
T KOG1368|consen 273 N-VP-LLRADHKRAKELAEYINTP------EEIRVEVPAVE-------TNIVNMVLCQA---RLTAEELCKFLEKNGILL 334 (384)
T ss_pred c-hH-HHHHHHHHHHHHHHHhccc------cceeeecchhh-------cceeeeecccc---cCCHHHHHHHHHHCCeEE
Confidence 1 23 3455667777777777765 35877766443 78988887543 267778999999999998
Q ss_pred ccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhh-hhhhhhh
Q 010538 429 RTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSS-FDFVNFS 502 (508)
Q Consensus 429 ~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~-~~~~~~~ 502 (508)
..|. ...+|+++|+-.|.++++.+...+ +.|+.+.
T Consensus 335 m~~~---------------------------------------s~r~Rivlh~Qvt~~~ve~~~~~~~k~~~~q~ 370 (384)
T KOG1368|consen 335 MGGA---------------------------------------SRRIRIVLHHQVTDEDVEYVKSVLSKKFLKQL 370 (384)
T ss_pred eecc---------------------------------------ccceEEEEEEecCHHHHHHHHHHHHHHHHhhc
Confidence 8763 345999999999999999999998 5555443
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-19 Score=187.79 Aligned_cols=161 Identities=12% Similarity=0.081 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHH-HHHHHhcCCeEEEEccCC
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGI-REYALSQGAAAFAIDVEE 162 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~-~~~~~~~G~~v~~v~~~~ 162 (508)
...+.+++.+|++.|.+ ..++++|++.|+..++.++ +++|++|+++...|+..... ...++..|++++.++..
T Consensus 64 p~~~~Le~~lA~leg~~----~al~~~sG~~Ai~~al~~l-l~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~~- 137 (431)
T PRK08248 64 PTTDVFEKRIAALEGGI----GALAVSSGQAAITYSILNI-ASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDPS- 137 (431)
T ss_pred chHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECCC-
Confidence 34677889999999975 3577888899999999888 78899999998888765544 45577789999999863
Q ss_pred ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC
Q 010538 163 AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG 242 (508)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~ 242 (508)
|+++++ +++ +++|++|++++++||||.+.|+++|.++|++ +
T Consensus 138 -------------------d~e~l~--~ai------~~~tklV~l~sp~NPtG~v~di~~I~~la~~------------~ 178 (431)
T PRK08248 138 -------------------DPENFE--AAI------TDKTKALFAETIGNPKGDVLDIEAVAAIAHE------------H 178 (431)
T ss_pred -------------------CHHHHH--Hhc------CCCCeEEEEECCCCCCCcccCHHHHHHHHHH------------c
Confidence 366777 554 4678999999999999999999999999998 8
Q ss_pred CeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc-ceEEEEec
Q 010538 243 RWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG-LGALIMRN 290 (508)
Q Consensus 243 g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G-~G~l~~~~ 290 (508)
|+++|+|++++.+....++ ++++|+++.|+||++|+|.. +|.+++.+
T Consensus 179 gi~vIvD~t~a~~~~~~pl-~~gaDivv~S~tK~lgg~g~~~Gg~v~~~ 226 (431)
T PRK08248 179 GIPLIVDNTFASPYLLRPI-EHGADIVVHSATKFIGGHGTSIGGVIVDS 226 (431)
T ss_pred CCEEEEeCCCCccccCChh-HcCCCEEEEcCccccCCCCCceEEEEEeC
Confidence 9999999999865544444 57899999999999995632 78877753
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.9e-19 Score=182.27 Aligned_cols=262 Identities=16% Similarity=0.077 Sum_probs=174.0
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEEccCCc
Q 010538 85 IVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDVEEA 163 (508)
Q Consensus 85 ~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~~~~ 163 (508)
..+.+++.+|++.+. + ++++++|+++|+.+++.++ .++|++|+++...|++...... +....|+++..++..
T Consensus 52 ~~~~le~~lA~l~g~--~--~v~~~~gg~~Ai~~~l~al-l~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d~~-- 124 (382)
T TIGR02080 52 TRDLLQQALAELEGG--A--GAVVTNTGMSAIHLVTTAL-LGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQG-- 124 (382)
T ss_pred hHHHHHHHHHHHhCC--C--cEEEEcCHHHHHHHHHHHH-cCCCCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEECCC--
Confidence 367788999999994 4 5899999999999999998 7899999999988886555433 345556777776421
Q ss_pred cCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCC
Q 010538 164 VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGR 243 (508)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g 243 (508)
|+++++ +++ +++|++|++++++||||.+.|+++|.++|++ +|
T Consensus 125 ------------------d~~~l~--~ai------~~~tklV~l~~p~NPtG~~~dl~~I~~la~~------------~g 166 (382)
T TIGR02080 125 ------------------DEQALR--AAL------AQKPKLVLIETPSNPLLRVVDIAKICHLAKA------------VG 166 (382)
T ss_pred ------------------CHHHHH--Hhc------CcCceEEEEECCCCCCCEecCHHHHHHHHHH------------cC
Confidence 356777 444 4578999999999999999999999999997 89
Q ss_pred eEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEec-hhHhhhccccccCceEEecccchhhhhhcc
Q 010538 244 WMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRN-DAAKLLKNTYFSGGTVAASIADIDFVKRRQ 320 (508)
Q Consensus 244 ~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~ 320 (508)
+++++|++++.+....++ ..++|+++.|++|+++++.+ .|++++++ +..+++....
T Consensus 167 ~~vvvD~a~~~~~~~~pl-~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~-------------------- 225 (382)
T TIGR02080 167 AVVVVDNTFLSPALQNPL-ALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWA-------------------- 225 (382)
T ss_pred CEEEEECCCcccccCCch-hhCCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHH--------------------
Confidence 999999999876543333 35789999999999886766 57777754 4444433210
Q ss_pred CccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEE-EecCCCCCccc------
Q 010538 321 GVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCT-IYGTYTSEVSY------ 393 (508)
Q Consensus 321 ~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~-~~~~~~~~~~~------ 393 (508)
.....+.+....+.+...++. +..+.++..+.+..+.+.|++.+ .++ ++-|.-. ..+
T Consensus 226 ----~~~g~~~sp~~a~l~lr~l~t-----l~~R~~~~~~na~~~a~~L~~~p------~v~~V~yP~l~-~~~~~~~~~ 289 (382)
T TIGR02080 226 ----NNLGVTGGAFDSYLTLRGLRT-----LVARMRLQQRNAQAIVEYLQTQP------LVKKIYYPGLP-DHPGHEIAA 289 (382)
T ss_pred ----HccCCCCCHHHHHHHHcccch-----HHHHHHHHHHHHHHHHHHHHhCC------CeeEEECCCCC-CCccHHHHH
Confidence 011122233322222223332 34445666788888888887763 453 3333211 000
Q ss_pred ---CCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccC
Q 010538 394 ---HDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTG 431 (508)
Q Consensus 394 ---~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g 431 (508)
..-+++++|.+++.. . ...++...|+--++.++-|
T Consensus 290 ~~~~g~g~~~s~~~~~~~-~--~~~~f~~~l~~~~~~~s~G 327 (382)
T TIGR02080 290 RQQKGFGAMLSFELKGGE-Q--TVRRFLGGLSLFTLAESLG 327 (382)
T ss_pred hhCCCCCceEEEEecCcH-H--HHHHHHHcCCcceEeccCC
Confidence 013779999996421 1 1123445555445555555
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-18 Score=181.62 Aligned_cols=338 Identities=15% Similarity=0.082 Sum_probs=211.8
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC-CCCceEEEcCC
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS-MKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~~~i~~t~g 111 (508)
++.-|+|..+. +..+|.+.+++.+.+. .. +.....+. .....++.++++++++.+ ++ ++++++|
T Consensus 41 dg~~~lD~~s~~~~~~lG~~~p~v~~ai~~~~~-~~-~~~~~~~~-----~~~~~~la~~l~~~~~~~~~~--~v~~~~s 111 (398)
T PRK03244 41 DGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLA-TL-GHVSNLFA-----TEPQIALAERLVELLGAPEGG--RVFFCNS 111 (398)
T ss_pred CCCEEEECCcCHhhccCCCCCHHHHHHHHHHHH-hc-cCccCccC-----CHHHHHHHHHHHHhCCCCCCC--EEEEeCc
Confidence 67778888652 3346778877755442 21 11111121 122356778889998854 46 8999999
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc-cCccccccccccccccccchhhhhcCC
Q 010538 112 ATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA-VDNDGLSESLVTSTKISLLPIQRRKGA 190 (508)
Q Consensus 112 ~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~-~~~~~l~~~~~~~~~~~~d~~~l~~~~ 190 (508)
+++|+..++......+++.|+..+..|.........+ .|......+.... .....+ + -.|++.++ +
T Consensus 112 gsea~~~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~------~---~~d~~~l~--~ 178 (398)
T PRK03244 112 GAEANEAAFKLARLTGRTKIVAAEGGFHGRTMGALAL--TGQPAKRAPFEPLPGGVEHV------P---YGDVDALA--A 178 (398)
T ss_pred hHHHHHHHHHHHHHHCCCeEEEECCCcCCccHHHHhc--cCCcccccCCCCCCCCceEe------C---CCCHHHHH--H
Confidence 9999999988664333456666554444433222211 1221111111100 000000 0 01467777 5
Q ss_pred CCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEeccccC-CCC--CC--CC
Q 010538 191 SFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC-VTQ--PP--DL 261 (508)
Q Consensus 191 ~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~-g~~--~~--d~ 261 (508)
.+ .+++++|++..++|++|.+.| +++|.++|++ +|+++|+|++|+. |.. .+ +.
T Consensus 179 ~~------~~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~------------~~~llI~DEv~~g~gr~g~~~~~~~ 240 (398)
T PRK03244 179 AV------DDDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDR------------HGALLVLDEVQTGIGRTGAWFAHQH 240 (398)
T ss_pred hh------cCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHH------------cCCEEEEeccccCCcccchHHhhhh
Confidence 44 357899999999999999998 6788888887 9999999999862 211 11 22
Q ss_pred CCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHH
Q 010538 262 SKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRH 341 (508)
Q Consensus 262 ~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~ 341 (508)
.....|++++ +|++++...+|++++++++.+.+.+...+. ....+...+++..+
T Consensus 241 ~~~~pDi~t~--sK~l~~G~~ig~~~~~~~~~~~~~~~~~~~------------------------t~~~~~~~~aaa~a 294 (398)
T PRK03244 241 DGVTPDVVTL--AKGLGGGLPIGACLAFGPAADLLTPGLHGS------------------------TFGGNPVACAAALA 294 (398)
T ss_pred hCCCCCEEEE--chhhhCCcccEEEEEcHHHHhhccCCCCcC------------------------CCCCCHHHHHHHHH
Confidence 3335687655 598882223899999998876554321100 01234455666666
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHH
Q 010538 342 GFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLA 421 (508)
Q Consensus 342 al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L 421 (508)
+++.+.+ +.+.+++.++.++|++.|+++.+ +.+.-+. + .+.++++.++.. ....+.+.+
T Consensus 295 ~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~----~~~~~v~--g-------~g~~~~i~~~~~-----~~~~~~~~l 353 (398)
T PRK03244 295 VLDTIAS---EGLLENAERLGEQLRAGIEALGH----PLVDHVR--G-------RGLLLGIVLTAP-----VAKAVEAAA 353 (398)
T ss_pred HHHHHHh---ccHHHHHHHHHHHHHHHHHhcCC----CceeeEe--e-------ccEEEEEEEecc-----HHHHHHHHH
Confidence 6665543 45678999999999999988621 1121111 1 278888888532 123478888
Q ss_pred hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 422 SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 422 ~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
.++||.+++.. .+.+|++++..+|++|++++++.+.+.++.
T Consensus 354 ~~~Gv~~~~~~---------------------------------------~~~iR~~p~~~~t~~~i~~~~~~l~~~l~~ 394 (398)
T PRK03244 354 REAGFLVNAVA---------------------------------------PDVIRLAPPLIITDAQVDAFVAALPAILDA 394 (398)
T ss_pred HHCCeEEeecC---------------------------------------CCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence 89999987621 468999999999999999999999988765
Q ss_pred h
Q 010538 502 S 502 (508)
Q Consensus 502 ~ 502 (508)
+
T Consensus 395 ~ 395 (398)
T PRK03244 395 A 395 (398)
T ss_pred c
Confidence 4
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.8e-19 Score=182.65 Aligned_cols=240 Identities=15% Similarity=0.086 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccch-HHHHHHHHhcCCeEEEEccCCc
Q 010538 85 IVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSV-LGIREYALSQGAAAFAIDVEEA 163 (508)
Q Consensus 85 ~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~-~~~~~~~~~~G~~v~~v~~~~~ 163 (508)
..+.+++.+|++.|.+ +.+++++++.|+..++.++ .++|++|+++...|+.. ..+...++..|++++.++.+
T Consensus 71 ~~~~le~~lA~l~g~~----~al~~~sG~~Ai~~~l~al-l~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~-- 143 (403)
T PRK07810 71 TVSMFEERLRLIEGAE----ACFATASGMSAVFTALGAL-LGAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDGE-- 143 (403)
T ss_pred hHHHHHHHHHHHhCCC----cEEEECChHHHHHHHHHHH-hCCCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECCC--
Confidence 3677899999999976 2566777778998888887 68899999998777554 44455677789999999753
Q ss_pred cCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCC
Q 010538 164 VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGR 243 (508)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g 243 (508)
|+++++ +++ +++|++|++++++||+|.+.|+++|.++|++ +|
T Consensus 144 ------------------d~~~l~--~ai------~~~tklV~~esp~Nptg~v~dl~~I~~la~~------------~g 185 (403)
T PRK07810 144 ------------------DLSQWE--EAL------SVPTQAVFFETPSNPMQSLVDIAAVSELAHA------------AG 185 (403)
T ss_pred ------------------CHHHHH--Hhc------CcCceEEEEECCCCCCCeecCHHHHHHHHHH------------cC
Confidence 366777 444 4678999999999999999999999999998 89
Q ss_pred eEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhh-hccccccCceEEecccchhhhhhcc
Q 010538 244 WMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKL-LKNTYFSGGTVAASIADIDFVKRRQ 320 (508)
Q Consensus 244 ~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~-l~~~~~g~~~~~~~~~~~~~~~~~~ 320 (508)
+++++|++++.+.....+ +.++|+++.|++|++++... .|+++.+++.+.. ++....
T Consensus 186 ~~vivD~a~a~~~~~~~~-~~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~------------------- 245 (403)
T PRK07810 186 AKVVLDNVFATPLLQRGL-PLGADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMR------------------- 245 (403)
T ss_pred CEEEEECCCCccccCChh-hcCCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHH-------------------
Confidence 999999999876553333 45799999999999984432 3777777765532 221110
Q ss_pred CccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEE-EecCCCCCccc------
Q 010538 321 GVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCT-IYGTYTSEVSY------ 393 (508)
Q Consensus 321 ~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~-~~~~~~~~~~~------ 393 (508)
.....++....+.+..+++. +..+.++..+.+.++.+.|++.+ .+. ++-|.-. ..+
T Consensus 246 -----~~g~~~s~~~a~l~l~~L~t-----l~~R~~~~~~~a~~~a~~L~~~p------~v~~V~yP~l~-~~p~~~~~~ 308 (403)
T PRK07810 246 -----HTGPALSAFNAWVLLKGLET-----LALRVRHSNASALRIAEFLEGHP------AVRWVRYPFLP-SHPQYDLAK 308 (403)
T ss_pred -----HhCCCCCHHHHHHHHhccCc-----HHHHHHHHHHHHHHHHHHHhcCC------CccEEECCCCC-CCccHHHHH
Confidence 11122333333333334443 46666777788888888888764 443 3323111 000
Q ss_pred ---CCCCceEEEEeeC
Q 010538 394 ---HDTGSMVSFNLKR 406 (508)
Q Consensus 394 ---~~~~~~v~~~~~~ 406 (508)
..-+++++|.+++
T Consensus 309 ~~~~g~g~~~s~~l~~ 324 (403)
T PRK07810 309 RQMSGGGTVVTFELDA 324 (403)
T ss_pred hhCCCCceEEEEEEcC
Confidence 0127899999975
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.6e-19 Score=184.45 Aligned_cols=214 Identities=14% Similarity=0.031 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHH-HHHHhcCCeEEEEccCC
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIR-EYALSQGAAAFAIDVEE 162 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~-~~~~~~G~~v~~v~~~~ 162 (508)
...+++++++|++.+.+. .++++|++.|+.++.. + .++||+||++...|+++..+. ..+...|++++.++..
T Consensus 133 pt~~aLE~~lA~leg~e~----ai~~~SG~aAi~~il~-l-l~~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd~~- 205 (464)
T PLN02509 133 PTRDALESLLAKLDKADR----AFCFTSGMAALSAVTH-L-IKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT- 205 (464)
T ss_pred HHHHHHHHHHHHHhCCCE----EEEeCcHHHHHHHHHH-H-hCCCCEEEEcCCchhhHHHHHHHHHHHCCeEEEEeCCC-
Confidence 457888999999998653 3555666778876664 4 588999999998888876554 3456789999888642
Q ss_pred ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC
Q 010538 163 AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG 242 (508)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~ 242 (508)
|+++++ +++ +++|++|++++++||+|.+.|+++|.++|++ +
T Consensus 206 -------------------d~e~l~--~ai------~~~TklV~lesPsNPtG~i~Dl~~I~~lAk~------------~ 246 (464)
T PLN02509 206 -------------------NLDEVA--AAI------GPQTKLVWLESPTNPRQQISDIRKIAEMAHA------------Q 246 (464)
T ss_pred -------------------CHHHHH--HhC------CcCCeEEEEECCCCCCCCHHHHHHHHHHHHH------------c
Confidence 356677 444 5788999999999999999999999999998 9
Q ss_pred CeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhH-hhhccccccCceEEecccchhhhhhc
Q 010538 243 RWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAA-KLLKNTYFSGGTVAASIADIDFVKRR 319 (508)
Q Consensus 243 g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~-~~l~~~~~g~~~~~~~~~~~~~~~~~ 319 (508)
|+++++|++++.+....++ ..++|++++|++|++++|.+ .|+++++++.+ +.+...
T Consensus 247 g~~lIVD~A~a~~~~~~pl-~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~-------------------- 305 (464)
T PLN02509 247 GALVLVDNSIMSPVLSRPL-ELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFL-------------------- 305 (464)
T ss_pred CCEEEEECCccccccCChh-hcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHH--------------------
Confidence 9999999999887654333 35799999999999987766 57777765532 222211
Q ss_pred cCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhccc
Q 010538 320 QGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLR 373 (508)
Q Consensus 320 ~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~ 373 (508)
+....+..+....+.+...++. ++.+.++..+.++++.+.|++.+
T Consensus 306 ----~~~~g~~l~p~~A~l~lr~L~t-----L~~R~~r~~~nA~~la~~L~~~p 350 (464)
T PLN02509 306 ----QNSEGSGLAPFDCWLCLRGIKT-----MALRIEKQQENARKIAMYLSSHP 350 (464)
T ss_pred ----HHhcCCCcCHHHHHHHHhhhhh-----HHHHHHHHHHHHHHHHHHHhcCC
Confidence 0001112233333333334443 46677888888999999998874
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-19 Score=186.28 Aligned_cols=293 Identities=13% Similarity=0.070 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHcC------CCCCCceE--EEcCChHHHHHHHHhhcC-CCCCCeEEEecccccchHHHHHHHHhcCCeEE
Q 010538 86 VRAAREQVLDYFN------ASMKDYKC--IFTSGATAALKLVGEAFP-WSHQSSYMYTMENHNSVLGIREYALSQGAAAF 156 (508)
Q Consensus 86 ~~~~r~~la~~~~------~~~~~~~i--~~t~g~t~al~~~~~~l~-~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~ 156 (508)
....|+++++++. ++++ +| ++|+|+++|+.+++.++. ..+|++|++....|+.+....+ ..|++++
T Consensus 71 ~~~lR~aia~~~~~~~~~~~~~~--~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~---~~g~~~v 145 (396)
T PRK09257 71 LAAYRQAVQELLFGADSPALAAG--RVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFE---AAGLEVK 145 (396)
T ss_pred CHHHHHHHHHHhcCCCCcccccC--eEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHH---HcCCcEE
Confidence 3455666666542 2565 66 999999999999987663 4789999999877776655544 4699999
Q ss_pred EEccC-C-ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCcccc
Q 010538 157 AIDVE-E-AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERIL 234 (508)
Q Consensus 157 ~v~~~-~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~ 234 (508)
.+|.. . +..+ |++.++ +.+.+ ..+++.++++++++||||.+++.+++.++++
T Consensus 146 ~v~~~~~~~~~~---------------d~~~l~--~~~~~---~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~------ 199 (396)
T PRK09257 146 TYPYYDAATKGL---------------DFDAML--ADLSQ---APAGDVVLLHGCCHNPTGADLTPEQWDELAE------ 199 (396)
T ss_pred EEeccccccCcc---------------CHHHHH--HHHHh---CCCCCEEEEeCCCCCCCCCCCCHHHHHHHHH------
Confidence 99973 2 2233 677777 55432 1245678888999999999999998888877
Q ss_pred ccCCCCCCCeEEEEeccccCCCCC-----CC---CCCC-CCcEEEEeccccccCCCc--ceEEEE--e-chhHhhhcccc
Q 010538 235 EISPFSKGRWMVLIDAAKGCVTQP-----PD---LSKY-PVDFVVMSFYKIFGYPTG--LGALIM--R-NDAAKLLKNTY 300 (508)
Q Consensus 235 ~~~~~~~~g~~vivD~a~~~g~~~-----~d---~~~~-~~D~~~~S~~K~~g~P~G--~G~l~~--~-~~~~~~l~~~~ 300 (508)
+|+++++++|+|.++..-... .. +... +.-+++.|++|.|+ |+| +||+++ . ++.+..+...+
T Consensus 200 ---~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~-~~GlRiG~~~~~~~~~~~~~~~~~~~ 275 (396)
T PRK09257 200 ---LLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFG-LYGERVGALSVVAEDAEEADRVLSQL 275 (396)
T ss_pred ---HHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCc-cccccceeEEEEeCCHHHHHHHHHHH
Confidence 666799999999998631110 11 1111 23488999999999 778 899984 2 23322221110
Q ss_pred ccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHH------HHhcChHHHHHHHHHHHHHHHHHHhcccC
Q 010538 301 FSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNL------INSLTVPAICRHIASLGMYVRKVLLSLRH 374 (508)
Q Consensus 301 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~------~~~~g~~~i~~~~~~l~~~l~~~L~~l~~ 374 (508)
.. ..+...++++.....++...+.. +. ..++..++++++.++.+.+.|++..
T Consensus 276 ~~--------------------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~-~~~~~~r~~~~~rr~~l~~~L~~~~- 333 (396)
T PRK09257 276 KA--------------------TIRTNYSNPPAHGAAIVATILNDPELRAEWE-AELEEMRERIKAMRQLLVEALKAKG- 333 (396)
T ss_pred HH--------------------HhhhhcCCCcHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 00 00001122222222333223221 11 1256678888999999999998762
Q ss_pred CCCCc-eEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhh
Q 010538 375 ENGAD-VCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSN 453 (508)
Q Consensus 375 ~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~ 453 (508)
.+ ++++..|.+ +.++|++++. ..+.+++.++||.+.+
T Consensus 334 ---~~~~~~~~~p~g--------g~~~w~~l~~--------~~~~~l~~~~~V~~~p----------------------- 371 (396)
T PRK09257 334 ---PSRDFDFIARQR--------GMFSYSGLTP--------EQVDRLREEFGVYAVG----------------------- 371 (396)
T ss_pred ---CCCCcccccccc--------eEEEecCCCH--------HHHHHHHHcCCEEEcC-----------------------
Confidence 01 244444433 6777776632 2366777888998743
Q ss_pred hhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 454 IEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
.+ ||+++. .+.++++++++.|++.
T Consensus 372 ------------------~~--ri~~~~-~~~~~i~~~~~~i~~~ 395 (396)
T PRK09257 372 ------------------SG--RINVAG-LNESNIDYVAEAIAAV 395 (396)
T ss_pred ------------------CC--eEEEee-CCHHHHHHHHHHHHhh
Confidence 23 999974 5889999999998763
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-19 Score=184.51 Aligned_cols=310 Identities=16% Similarity=0.100 Sum_probs=198.1
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhcccc--CCCCCccchhhhhhHHHHH-HHHHHHHHcCCCCCCceE-EEcCChHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVY--GNPHSQSDISLATCDIVRA-AREQVLDYFNASMKDYKC-IFTSGATA 114 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~r~~la~~~~~~~~~~~i-~~t~g~t~ 114 (508)
.+.+-|- ++...++|.+.++.-. .+.+.| +.|+..++.|....+.++. +.+.++++|+++++.+.+ +=.-|++.
T Consensus 20 ~~~l~Li-aSEN~~Sp~v~~al~S-~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~ 97 (399)
T PF00464_consen 20 RSTLNLI-ASENYMSPAVREALGS-DLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFGAEPKEWYANVQPHSGSQ 97 (399)
T ss_dssp HHSEE-C-TT-----HHHHHHHTS-GGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT-STTTEEEE---SSHHH
T ss_pred hcCcccc-CcccccCHHHHHHhCC-cceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhCCCcccceEEeecCCchH
Confidence 3455554 5566678888777544 444544 3566667767666665554 888899999999664222 23357778
Q ss_pred HHHHHHhhcCCCCCCeEEEecccccchH---HHHHH----HHhcCCeEEEEccCC-ccCccccccccccccccccchhhh
Q 010538 115 ALKLVGEAFPWSHQSSYMYTMENHNSVL---GIREY----ALSQGAAAFAIDVEE-AVDNDGLSESLVTSTKISLLPIQR 186 (508)
Q Consensus 115 al~~~~~~l~~~~g~~vl~~~~~h~s~~---~~~~~----~~~~G~~v~~v~~~~-~~~~~~l~~~~~~~~~~~~d~~~l 186 (508)
|+..++.+| .++||+|+..+..|...+ ..... +.....++...+++. .+.+ |.+++
T Consensus 98 An~av~~aL-l~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~I---------------D~d~l 161 (399)
T PF00464_consen 98 ANLAVYMAL-LKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLI---------------DYDEL 161 (399)
T ss_dssp HHHHHHHHH-T-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB----------------HHHH
T ss_pred HHHHHHHHH-HhhcCcEEecChhhcccccccccccccccccccceEEEEeeeeecCCCeE---------------CHHHH
Confidence 999999999 699999998876654332 11111 011235677778773 4555 57777
Q ss_pred hcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC-----CCCCCCC
Q 010538 187 RKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC-----VTQPPDL 261 (508)
Q Consensus 187 ~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~-----g~~~~d~ 261 (508)
+ +.++ ..++++|++.... .-..+|.+++.++|++ .|+++++|.+|.. |..|-++
T Consensus 162 ~--~~a~-----~~kPklIi~G~S~--y~~~~d~~~~reIad~------------vga~l~~D~sH~~GLIa~g~~~~P~ 220 (399)
T PF00464_consen 162 E--KLAK-----EHKPKLIICGASS--YPRPIDFKRFREIADE------------VGAYLMADISHIAGLIAGGLFPNPF 220 (399)
T ss_dssp H--HHHH-----HH--SEEEEE-SS--TSS---HHHHHHHHHH------------TT-EEEEE-TTTHHHHHTTSS--GC
T ss_pred H--HHHh-----hcCCCEEEECchh--ccCccCHHHHHHHHHh------------cCcEEEecccccccceehheecCcc
Confidence 7 3332 2467888876533 3467889999999998 8999999999964 5555556
Q ss_pred CCCCCcEEEEeccccccCCCcceEEEEe--------------chhHhhhccccccCceEEecccchhhhhhccCcccccc
Q 010538 262 SKYPVDFVVMSFYKIFGYPTGLGALIMR--------------NDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFE 327 (508)
Q Consensus 262 ~~~~~D~~~~S~~K~~g~P~G~G~l~~~--------------~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (508)
.. +|++++|+||+|.||+| |+++.+ +++.+++...++.+.+
T Consensus 221 ~~--ADvvt~sThKtl~GPrg-giI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~q---------------------- 275 (399)
T PF00464_consen 221 PY--ADVVTGSTHKTLRGPRG-GIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQ---------------------- 275 (399)
T ss_dssp CT--SSEEEEESSGGG-SSS--EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-----------------------
T ss_pred cc--ceEEEeeccccccccCc-eEEEEcCCccccCCcccccHHHHHHHhccccCCCcc----------------------
Confidence 53 99999999998888997 999988 5566666655444322
Q ss_pred CCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCC
Q 010538 328 DGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRP 407 (508)
Q Consensus 328 ~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 407 (508)
|.+....++++..++....+...++..+++.++++.|.+.|.+. |++++...+. .++|++++...
T Consensus 276 -g~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~~-------G~~v~~ggTd-------~H~vlvd~~~~ 340 (399)
T PF00464_consen 276 -GGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALAEALQER-------GFKVVTGGTD-------NHQVLVDLRSF 340 (399)
T ss_dssp -SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-------T-EEGGGS-S-------SSEEEEEGGGG
T ss_pred -cCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhC-------CcEEEECCCC-------CCeEEEEeccc
Confidence 55677889999999988655556899999999999999999987 8999975543 89999998642
Q ss_pred CCCccCHHHHHHHHhhCCCeecc
Q 010538 408 DGSWFGYREVEKLASLSGIQLRT 430 (508)
Q Consensus 408 ~~~~~~~~~l~~~L~~~gI~v~~ 430 (508)
. ++...+.+.|++.||.+..
T Consensus 341 ~---~~g~~a~~~Le~~gI~vnk 360 (399)
T PF00464_consen 341 G---IDGKEAEKALEEAGIIVNK 360 (399)
T ss_dssp T---S-HHHHHHHHHHTTEE-EE
T ss_pred c---cchHHHHHHHHhcCeeecc
Confidence 1 3445688999999999864
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.7e-19 Score=172.30 Aligned_cols=346 Identities=14% Similarity=0.076 Sum_probs=227.3
Q ss_pred CCeeeeCCCCC-----CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC------CCCCCceEEE
Q 010538 40 GTVYLDHAGAT-----LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN------ASMKDYKCIF 108 (508)
Q Consensus 40 ~~iyld~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------~~~~~~~i~~ 108 (508)
.++-|.++-.+ ...+.+.+|+.+...... ...|. .......+|+++|++++ ..++ +|++
T Consensus 62 ~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sgk----~N~Ya----ps~G~~~AR~AVAeYl~~~l~~kl~a~--DV~l 131 (447)
T KOG0259|consen 62 PILPLGHGDPSVYPCFRTSQEAEQAVVDALRSGK----GNGYA----PSVGILPARRAVAEYLNRDLPNKLTAD--DVVL 131 (447)
T ss_pred eeccCCCCCCCccccccCCHHHHHHHHHHHhcCC----CCCcC----CccccHHHHHHHHHHhhcCCCCccCcC--ceEE
Confidence 56777764332 335667777777654321 12222 23346789999999976 3566 8999
Q ss_pred cCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhc
Q 010538 109 TSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRK 188 (508)
Q Consensus 109 t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~ 188 (508)
|+|+++|+.+++.++ .++|..|+++...||-+.. .+...|++|+..++-.+..++ -|++.++
T Consensus 132 tsGC~qAIe~~i~~L-A~p~aNILlPrPGfp~Y~~---~a~~~~lEVR~ydlLPe~~we-------------IDL~~ve- 193 (447)
T KOG0259|consen 132 TSGCSQAIELAISSL-ANPGANILLPRPGFPLYDT---RAIYSGLEVRYYDLLPEKDWE-------------IDLDGVE- 193 (447)
T ss_pred eccchHHHHHHHHHh-cCCCCceecCCCCCchHHH---hhhhcCceeEeecccCcccce-------------echHHHH-
Confidence 999999999999999 5899999999877765543 344569999999875443331 1788888
Q ss_pred CCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEecccc---CCCCC-CCCCCC
Q 010538 189 GASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKG---CVTQP-PDLSKY 264 (508)
Q Consensus 189 ~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~---~g~~~-~d~~~~ 264 (508)
..++++|..+++.+++||.|.+++.+-+.+++. .|+++|++||.|+++. +|-.| +.+.+.
T Consensus 194 -------al~DENT~AivviNP~NPcGnVys~~HL~kiae---------~A~klgi~vIaDEVY~~~vfg~~pfvpmg~f 257 (447)
T KOG0259|consen 194 -------ALADENTVAIVVINPNNPCGNVYSEDHLKKIAE---------TAKKLGIMVIADEVYGHTVFGDKPFVPMGKF 257 (447)
T ss_pred -------HhhccCeeEEEEeCCCCCCcccccHHHHHHHHH---------HHHHhCCeEEehhhcceeecCCCCccchhhc
Confidence 444788999999999999999999776666655 4555999999999975 23322 233322
Q ss_pred ---CCcEEEEeccc-cccCCCc--ceEEEEechhHhhhccccc-cCceEEecccchhhhhhccCccccccCCCCChhHHH
Q 010538 265 ---PVDFVVMSFYK-IFGYPTG--LGALIMRNDAAKLLKNTYF-SGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIA 337 (508)
Q Consensus 265 ---~~D~~~~S~~K-~~g~P~G--~G~l~~~~~~~~~l~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~ 337 (508)
=.-+.++|.+| |+- | | +||+++++..- -++.... .+ ...+ .-....|++.-..
T Consensus 258 ssiVPVitlggisKrW~V-P-GWRlGWi~~hD~~g-vf~~~~~~q~--------~~~~---------~~~~~~p~TiiQ~ 317 (447)
T KOG0259|consen 258 SSIVPVITLGGISKRWIV-P-GWRLGWIALHDPRG-VFRDTKVVQG--------IKNF---------LDIIPGPATIIQG 317 (447)
T ss_pred cccCceEeeccccccccc-C-CceeeeEEEecccc-cccchHHHHH--------HHHH---------HhccCCccHhHHH
Confidence 22366789999 776 8 6 99999986531 1221100 00 0001 0112334444344
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCC--CCCccCHH
Q 010538 338 SIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRP--DGSWFGYR 415 (508)
Q Consensus 338 ~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~ 415 (508)
|+-.-|+--.+.-.+....-++..++...+.|+.++ +++....+.. ..++++.+.-. ..-+-|..
T Consensus 318 AlP~IL~kTp~efF~k~~~~lk~na~l~y~~Lk~IP------~l~cp~kPeg-------~mylmv~l~~s~~~~~~dD~d 384 (447)
T KOG0259|consen 318 ALPDILEKTPEEFFDKKLSFLKSNADLCYSRLKDIP------CLTCPVKPEG-------CMYLMVKLNLSLFPDIEDDVD 384 (447)
T ss_pred HhHHHHHhChHHHHHHHHHHHHhhHHHHHHHHhcCC------CcccCcCCCc-------ceEEEeccchhhhccccccHH
Confidence 443333332333466777888889999999999994 6764333321 56666665321 11111334
Q ss_pred HHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhh
Q 010538 416 EVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSS 495 (508)
Q Consensus 416 ~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~ 495 (508)
...++.+++.+++-+|..+. .++++|+++.. ..+.++...++|
T Consensus 385 Fc~kL~~Eesv~~LPG~af~-----------------------------------~~nw~Ri~i~~--~~~~leea~~Ri 427 (447)
T KOG0259|consen 385 FCQKLAREESVICLPGQAFG-----------------------------------LKNWLRIVITV--EEEMLEEAFSRI 427 (447)
T ss_pred HHHHHhhhcceEEecccccc-----------------------------------CCCeEEEEEcc--ChHHHHHHHHHH
Confidence 46677788999999986432 27999999985 678888989998
Q ss_pred hhhh
Q 010538 496 FDFV 499 (508)
Q Consensus 496 ~~~~ 499 (508)
+.|-
T Consensus 428 k~Fc 431 (447)
T KOG0259|consen 428 KEFC 431 (447)
T ss_pred HHHH
Confidence 8874
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-19 Score=187.77 Aligned_cols=297 Identities=14% Similarity=0.038 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHcC------CCCCCceEE--EcCChHHHHHHHHh---hcCCCCCCeEEEecccccchHHHHHHHHhcCCe
Q 010538 86 VRAAREQVLDYFN------ASMKDYKCI--FTSGATAALKLVGE---AFPWSHQSSYMYTMENHNSVLGIREYALSQGAA 154 (508)
Q Consensus 86 ~~~~r~~la~~~~------~~~~~~~i~--~t~g~t~al~~~~~---~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~ 154 (508)
..+.|+++++++. ++++ +|+ .|.|++.|+.+++. ++ ..+|++|++....|+.+... ++..|++
T Consensus 74 ~~~lR~aia~~~~~~~~~~~~~~--~v~~~~t~G~~~al~~~~~~l~~~-~~~Gd~Vlv~~P~y~~~~~~---~~~~G~~ 147 (404)
T PTZ00376 74 LQSFIEAAQKLLFGEASYALAEK--RIATVQALSGTGALRLGFEFLKRF-LPAGTTVYVSNPTWPNHVNI---FKSAGLN 147 (404)
T ss_pred CHHHHHHHHHHhcCCCccccccC--eEEEeeccCcchHHHHHHHHHHHh-cCCCCEEEEcCCCchhHHHH---HHHcCCc
Confidence 4566777777642 3566 787 48999999988765 45 57899999888666666544 4456999
Q ss_pred EEEEccCC--ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCcc
Q 010538 155 AFAIDVEE--AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPER 232 (508)
Q Consensus 155 v~~v~~~~--~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~ 232 (508)
++.+|+.+ +..+ |++.++ +++++. .++++++++++++||||.+++.+++.++++
T Consensus 148 ~~~v~l~~~~~~~~---------------d~~~l~--~~~~~~---~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~---- 203 (404)
T PTZ00376 148 VKEYRYYDPKTKGL---------------DFDGML--EDLRTA---PNGSVVLLHACAHNPTGVDPTEEQWKEIAD---- 203 (404)
T ss_pred eeeccccCcccCCc---------------CHHHHH--HHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHH----
Confidence 99999842 2233 567777 555321 345688889999999999999998888877
Q ss_pred ccccCCCCCCCeEEEEeccccCCCCC---------CCCCCC-CCcEEEEeccccccCCCc--ceEEE---EechhHhhhc
Q 010538 233 ILEISPFSKGRWMVLIDAAKGCVTQP---------PDLSKY-PVDFVVMSFYKIFGYPTG--LGALI---MRNDAAKLLK 297 (508)
Q Consensus 233 ~~~~~~~~~~g~~vivD~a~~~g~~~---------~d~~~~-~~D~~~~S~~K~~g~P~G--~G~l~---~~~~~~~~l~ 297 (508)
+|++|+++||+|.++..-... ..+... +.-+++.|++|.|+ .+| +||++ .+++.++.+.
T Consensus 204 -----~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~-~~GlRvG~~~~~~~~~~~~~~l~ 277 (404)
T PTZ00376 204 -----VMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMG-LYGERIGALHIVCANKEEAANVL 277 (404)
T ss_pred -----HHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCccc-ccccccceEEEEeCCHHHHHHHH
Confidence 566799999999997531110 011111 12488899999999 667 89984 4655443332
Q ss_pred cccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHH---HHh--cChHHHHHHHHHHHHHHHHHHhcc
Q 010538 298 NTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNL---INS--LTVPAICRHIASLGMYVRKVLLSL 372 (508)
Q Consensus 298 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~---~~~--~g~~~i~~~~~~l~~~l~~~L~~l 372 (508)
.....- .. ...++.+.....++..+++. ..+ ..++..++++++.++.+.+.|++.
T Consensus 278 ~~~~~~-------------------~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 337 (404)
T PTZ00376 278 SQLKLI-------------------IR-PMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKAL 337 (404)
T ss_pred HHHHHH-------------------Hh-hhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 110000 00 01112222223333333321 001 014556678889999999999876
Q ss_pred cCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhh
Q 010538 373 RHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLS 452 (508)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~ 452 (508)
.. ..++.++.+.+ +.++|++++. ....++++++||.+.+|
T Consensus 338 ~~---~~~~~~~~p~g--------g~f~~~~~~~--------~~~~~L~~~~~v~v~p~--------------------- 377 (404)
T PTZ00376 338 GS---PGDWEHIINQI--------GMFSFTGLTK--------EQVERLIEKYHIYLLDN--------------------- 377 (404)
T ss_pred CC---CCcccccccCc--------eEEEecCCCH--------HHHHHHHHhCCEeecCC---------------------
Confidence 21 01234444432 5677766532 12334445569987552
Q ss_pred hhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 453 NIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
+ |||++. .+.++++.++++|++++..
T Consensus 378 --------------------~--Ris~~~-~~~~~~~~~~~~l~~~~~~ 403 (404)
T PTZ00376 378 --------------------G--RISVAG-LTSKNVDYVAEAIHDVVRN 403 (404)
T ss_pred --------------------C--eEEEec-cCHHhHHHHHHHHHHHHhc
Confidence 2 999964 6899999999999998764
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-18 Score=179.56 Aligned_cols=215 Identities=12% Similarity=0.037 Sum_probs=149.6
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHH-HHHHHHhcCCeEEEEccC
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLG-IREYALSQGAAAFAIDVE 161 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~-~~~~~~~~G~~v~~v~~~ 161 (508)
......+++.+|++.|++.. +++.+ ++.++.+++. + .++|++|+++...|++... +.+.+...|++++.++..
T Consensus 49 ~p~~~~Le~~lA~l~g~~~~---~~~~s-G~aai~~~~~-~-l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~ 122 (377)
T PRK07671 49 NPTRAALEELIAVLEGGHAG---FAFGS-GMAAITAVMM-L-FSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTS 122 (377)
T ss_pred ChHHHHHHHHHHHHhCCCce---EEeCC-HHHHHHHHHH-H-hCCCCEEEECCCccchHHHHHHHHHhcCCeEEEEECCC
Confidence 44577889999999998654 55544 5567776654 4 5789999999988885443 445667789999988742
Q ss_pred CccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCC
Q 010538 162 EAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK 241 (508)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~ 241 (508)
|+++++ +++ +++|++|++++++||+|.+.|+++|.++|++
T Consensus 123 --------------------d~~~l~--~ai------~~~tklV~le~P~NPtg~~~dl~~I~~la~~------------ 162 (377)
T PRK07671 123 --------------------NLEEVE--EAI------RPNTKAIYVETPTNPLLKITDIKKISTIAKE------------ 162 (377)
T ss_pred --------------------CHHHHH--Hhc------CCCCeEEEEECCCCCCCcccCHHHHHHHHHH------------
Confidence 366777 444 5688999999999999999999999999998
Q ss_pred CCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEec-hhHhhhccccccCceEEecccchhhhhh
Q 010538 242 GRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRN-DAAKLLKNTYFSGGTVAASIADIDFVKR 318 (508)
Q Consensus 242 ~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~ 318 (508)
+|+++++|++++.+.....+ ..++|+++.|++|++++|.+ .|++++++ ++.+++...
T Consensus 163 ~g~~lvvD~a~~~~~~~~p~-~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~------------------- 222 (377)
T PRK07671 163 KGLLTIVDNTFMTPYWQSPI-SLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFV------------------- 222 (377)
T ss_pred cCCEEEEECCCCccccCChh-hhCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHH-------------------
Confidence 89999999998754432222 45789999999999997864 46676654 444443321
Q ss_pred ccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhccc
Q 010538 319 RQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLR 373 (508)
Q Consensus 319 ~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~ 373 (508)
+....+..+....+.+...++. +..+.++..+.+..+.+.|++.+
T Consensus 223 -----~~~~g~~~~~~~a~l~~~~l~t-----l~~R~~~~~~na~~la~~L~~~~ 267 (377)
T PRK07671 223 -----QNSTGGILGPQDSWLLLRGLKT-----LGIRMEEHETNSRAIAEFLNNHP 267 (377)
T ss_pred -----HHhhcCCCCHHHHHHHHcCcCh-----HHHHHHHHHHHHHHHHHHHHcCC
Confidence 0111222332222222222222 44566777788888888888764
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-18 Score=178.86 Aligned_cols=162 Identities=14% Similarity=0.088 Sum_probs=125.4
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHH-HHHHHhcCCeEEEEccC
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGI-REYALSQGAAAFAIDVE 161 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~-~~~~~~~G~~v~~v~~~ 161 (508)
......+++++|++.|++.. +++ ++++.|+.+++. + .++|++|+++...|++.... ...+...|+++..++..
T Consensus 49 ~p~~~~Le~~la~l~g~~~a---l~~-~SG~~Al~~~l~-~-l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~~ 122 (380)
T PRK06176 49 NPTRFALEELIADLEGGVKG---FAF-ASGLAGIHAVFS-L-FQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDTS 122 (380)
T ss_pred ChhHHHHHHHHHHHhCCCCE---EEE-CCHHHHHHHHHH-H-cCCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCCC
Confidence 34467789999999997654 555 555668887775 4 47899999998888766544 34567789999888753
Q ss_pred CccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCC
Q 010538 162 EAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK 241 (508)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~ 241 (508)
|+++++ +++ +++|++|++++++||+|.+.|+++|.++||+
T Consensus 123 --------------------d~e~l~--~ai------~~~t~lV~lesP~Nptg~~~di~~I~~la~~------------ 162 (380)
T PRK06176 123 --------------------DLSQIK--KAI------KPNTKALYLETPSNPLLKITDLAQCASVAKD------------ 162 (380)
T ss_pred --------------------CHHHHH--Hhc------CcCceEEEEECCCCCCceecCHHHHHHHHHH------------
Confidence 366777 444 4678999999999999999999999999998
Q ss_pred CCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEech
Q 010538 242 GRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRND 291 (508)
Q Consensus 242 ~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~ 291 (508)
+|+++++|++++.+....++ .+++|++++|++|++++|.. .|+++.+++
T Consensus 163 ~gi~vivD~t~a~~~~~~p~-~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~ 213 (380)
T PRK06176 163 HGLLTIVDNTFATPYYQNPL-LLGADIVVHSGTKYLGGHSDVVAGLVTTNNE 213 (380)
T ss_pred cCCEEEEECCccccccCCcc-ccCCCEEEecCceeccCCccceeeEEEecHH
Confidence 89999999999876543333 46899999999999987753 466666543
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-17 Score=169.96 Aligned_cols=331 Identities=14% Similarity=0.099 Sum_probs=202.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA 163 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~ 163 (508)
...+++.+.++++++.+ .+++|+|+|+|+.+++.++..++|++|+++...|+++...+ ...|++++.++++.+
T Consensus 31 ~~~~~~e~~la~~~g~~----~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~---~~~G~~~v~vd~d~~ 103 (376)
T TIGR02379 31 PFSRRCETWLENRTGTK----KALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAF---VLRGAKIVFVDIRPD 103 (376)
T ss_pred HHHHHHHHHHHHHhCCC----eEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHH---HHcCCEEEEEecCCC
Confidence 34677888899998774 68999999999999998886789999999998887765443 456999999999864
Q ss_pred c-CccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC
Q 010538 164 V-DNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG 242 (508)
Q Consensus 164 ~-~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~ 242 (508)
. .+ |+++++ +++ +++|++|+. ++++|...|+++|.++|++ +
T Consensus 104 ~~~~---------------d~~~le--~~i------~~~tk~Iip---~~~~G~~~d~~~I~~la~~------------~ 145 (376)
T TIGR02379 104 TMNI---------------DETLIE--SAI------THRTKAIVP---VHYAGVACDMDTIMALANK------------H 145 (376)
T ss_pred cCCC---------------CHHHHH--Hhc------CcCceEEEE---eCCCCCccCHHHHHHHHHH------------C
Confidence 3 34 678888 554 567898874 4579999999999999998 9
Q ss_pred CeEEEEeccccCCCCCCCCCCCCC--cEEEEeccc--ccc-CCCcceEEEEe-chhHhhhccccccCceEE-ecc-cchh
Q 010538 243 RWMVLIDAAKGCVTQPPDLSKYPV--DFVVMSFYK--IFG-YPTGLGALIMR-NDAAKLLKNTYFSGGTVA-ASI-ADID 314 (508)
Q Consensus 243 g~~vivD~a~~~g~~~~d~~~~~~--D~~~~S~~K--~~g-~P~G~G~l~~~-~~~~~~l~~~~~g~~~~~-~~~-~~~~ 314 (508)
|++||+|++|+.|.. .+-...+. |+.++|+|+ .+. |+.| |+++.+ +++.+++++....|.... ... ....
T Consensus 146 ~i~vIeDaa~~~g~~-~~~~~~g~~~~~~~fSf~~~K~l~~g~~g-G~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 223 (376)
T TIGR02379 146 QLFVIEDAAQGVMST-YKGRALGSIGHLGTFSFHETKNYTSGGEG-GALLINDQAFIERAEIIREKGTNRSQFFRGEVDK 223 (376)
T ss_pred CCEEEEECccccCCc-cCCcccCCCCCEEEEeCCCCCcCcccCCc-eEEEECCHHHHHHHHHHHHhCCCCccccccCCCc
Confidence 999999999998764 33333333 788888876 344 2334 777776 566666665543221100 000 0000
Q ss_pred hhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCce-EEEec-CCCCCcc
Q 010538 315 FVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADV-CTIYG-TYTSEVS 392 (508)
Q Consensus 315 ~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~-~~~~~-~~~~~~~ 392 (508)
+. .......++. +-.+.+...+.++. ++.+.++-++..++..+.|..+.. .+ +++.. +...
T Consensus 224 ~~--~~~~g~n~~~---~~~~Aa~g~~qL~~-----l~~~~~~r~~~~~~y~~~L~~~~~----~~~~~~~~~~~~~--- 286 (376)
T TIGR02379 224 YT--WRDIGSSYLP---SELQAAYLWAQLEQ-----ADRINQDRLATWQLYQDALKPLEE----KGIIELPSIPNGC--- 286 (376)
T ss_pred ce--eeeecccCCc---cHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHhccCCc----CCeeeCCCCCCCC---
Confidence 00 0000111111 11111111233443 355556666777777777766521 11 22221 1111
Q ss_pred cCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhh---cCCChhhhhhhhhcCCccCCCccccCC
Q 010538 393 YHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKY---LGLSHSDLLSNIEAGHVCWDDNDIIHG 469 (508)
Q Consensus 393 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~---~~~~~s~~~~~~~~~~~~~~~~~~~~~ 469 (508)
....++.++.++.. .+..++.+.|.++||.++.+...... +++ ++..+.+...+ ..
T Consensus 287 -~~~~~~~~i~~~~~----~~r~~l~~~L~~~gI~~~~~~~p~~~--~~~~~~~~~~~~~~p~~--------------~~ 345 (376)
T TIGR02379 287 -QHNAHMFYIKLKDE----DDRNELIKYLKEQEIMAVFHYVPLHS--SPAGRYFGRFHGEDIYT--------------TK 345 (376)
T ss_pred -eeeeEEEEEEECCc----CCHHHHHHHHHHCCCCccccCcCCCc--chhHHhhCCCCCCChHH--------------HH
Confidence 01123445555431 24457999999999998764321111 110 00000000000 01
Q ss_pred CCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 470 KPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 470 ~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
.....+.+-+|..-|.+|++++++.+++++
T Consensus 346 ~~~~~l~LP~~~~l~~~~~~~i~~~i~~~~ 375 (376)
T TIGR02379 346 ESERLVRLPLYYGLSKEDQARVIQTICDYL 375 (376)
T ss_pred HHhceEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 125679999999999999999999998764
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-17 Score=174.78 Aligned_cols=327 Identities=14% Similarity=0.086 Sum_probs=210.5
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccC
Q 010538 86 VRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVD 165 (508)
Q Consensus 86 ~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~ 165 (508)
..++++.+++++|.+ .+++|+|+|+|+.+++.++ .++|++| ++...++++...+. ..|++++.++.+....
T Consensus 55 ~~~Leeaia~~~g~~----~vv~t~~Gt~Al~la~~al-~~pGD~V-~~~~~f~~~~~~i~---~~Ga~pv~v~i~~~~~ 125 (431)
T cd00617 55 FYDLEDAVQDLFGFK----HIIPTHQGRGAENILFSIL-LKPGRTV-PSNMHFDTTRGHIE---ANGAVPVDLVIDEAHD 125 (431)
T ss_pred HHHHHHHHHHHHCCC----eEEEcCCHHHHHHHHHHHh-CCCCCEE-ccCCcccchHHHHH---hCCCEeEEEecccccc
Confidence 567889999999985 6899999999999999998 6789977 45555555544433 4599999999864321
Q ss_pred ccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCC-ccccCHHHHHHHHcCCccccccCCCCCCCe
Q 010538 166 NDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFS-GSRFNLDLINIMKKNPERILEISPFSKGRW 244 (508)
Q Consensus 166 ~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~t-G~~~~i~~i~~l~~~~~~~~~~~~~~~~g~ 244 (508)
.+ +..+.+..+|+++++ +++.++ ..+++++|+++.++|++ |..++.+.|.++++ +|+++|+
T Consensus 126 ~~-----~~~pf~gniD~e~Le--~~I~~~--~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~e---------ia~~~gi 187 (431)
T cd00617 126 AQ-----ELIPFKGNIDVAKLE--KLIDEV--GAENIPYIVLTITNNTAGGQPVSMANLREVRE---------LAHKYGI 187 (431)
T ss_pred cc-----cccCCCCCcCHHHHH--HHhCcc--cCCCccEEEEECCcCCCCCccCCHHHHHHHHH---------HHHHcCC
Confidence 00 000111123799999 777432 12458999999999998 99998876654444 4445999
Q ss_pred EEEEeccccCC-----------CCCCCCCC------CCCcEEEEeccccccCCCcceEEEEec-hhHhhhccccccCceE
Q 010538 245 MVLIDAAKGCV-----------TQPPDLSK------YPVDFVVMSFYKIFGYPTGLGALIMRN-DAAKLLKNTYFSGGTV 306 (508)
Q Consensus 245 ~vivD~a~~~g-----------~~~~d~~~------~~~D~~~~S~~K~~g~P~G~G~l~~~~-~~~~~l~~~~~g~~~~ 306 (508)
+||.|+++..+ ....++.+ ...|.+++|++|.++.|.| |+++.++ +++++++...+..
T Consensus 188 ~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~G-G~i~~~d~~l~~~~~~~~~~~--- 263 (431)
T cd00617 188 PVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNIG-GFLALRDDELYEEARQRVVLY--- 263 (431)
T ss_pred EEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCccc-eEEEeCcHHHHHHHHHhcccc---
Confidence 99999997642 33333322 1479999999997665765 7888887 4766655321100
Q ss_pred EecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecC
Q 010538 307 AASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGT 386 (508)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~ 386 (508)
+.....|..+...+.++..+++...+ .+.+.++ .+.+++|.+.|.+. |+.+..|
T Consensus 264 ----------------~~~~~~gG~~~r~~~A~A~gL~e~~~--~~~l~~~-~~~r~~l~~~L~~~-------G~~v~~P 317 (431)
T cd00617 264 ----------------EGFVTYGGMAGRDMEALAQGLREAVE--EDYLRHR-VEQVRYLGDRLDEA-------GVPIVEP 317 (431)
T ss_pred ----------------CCccccccccHHHHHHHHHHHHhccc--HHHHHHH-HHHHHHHHHHHHHC-------CCCccCC
Confidence 11112355566666666556653211 2334344 44569999999987 6877776
Q ss_pred CCCCcccCCCCceEEEEeeC----CCCCccCHHHHH-HHHhhCCCeec-cCCCCCchHHHhhcCCChhhhhhhhhcCCcc
Q 010538 387 YTSEVSYHDTGSMVSFNLKR----PDGSWFGYREVE-KLASLSGIQLR-TGCFCNPGACAKYLGLSHSDLLSNIEAGHVC 460 (508)
Q Consensus 387 ~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~~l~-~~L~~~gI~v~-~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 460 (508)
.+ ++.++++++. .+..+++...+. +++.+.||.+. -|....+..
T Consensus 318 ~G--------gh~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~---------------------- 367 (431)
T cd00617 318 AG--------GHAVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAGRD---------------------- 367 (431)
T ss_pred Cc--------ceEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEeecceecccC----------------------
Confidence 54 7888888763 222333444455 67788899964 344221110
Q ss_pred CCCcc-ccCCCCCceEEEecCC-CCCHHHHHHHHHhhhhhhhh
Q 010538 461 WDDND-IIHGKPTGAIRVSFGY-MSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 461 ~~~~~-~~~~~~~~~iRis~~~-~~t~eev~~l~~~~~~~~~~ 501 (508)
++. ......-..+|+++.- --|.++++.+++++.++.+-
T Consensus 368 --~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~ 408 (431)
T cd00617 368 --PNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYER 408 (431)
T ss_pred --CCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHhh
Confidence 000 0000013679999873 35899999999999888654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-18 Score=179.29 Aligned_cols=159 Identities=14% Similarity=0.097 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHH-HHHHhcCCeEEEEccCCc
Q 010538 85 IVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIR-EYALSQGAAAFAIDVEEA 163 (508)
Q Consensus 85 ~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~-~~~~~~G~~v~~v~~~~~ 163 (508)
....+++.+|++.|.+. .+++++++.|+.+++.++ .++|++||++...|++..... ..+...|++++.++.+
T Consensus 64 ~~~~le~~lA~l~g~~~----al~~~SG~~Ai~~al~al-l~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-- 136 (427)
T PRK05994 64 TNAVLEERVAALEGGTA----ALAVASGHAAQFLVFHTL-LQPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADAD-- 136 (427)
T ss_pred cHHHHHHHHHHHhCCCc----EEEEcCHHHHHHHHHHHH-hCCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECCC--
Confidence 46678899999999874 367788888999999988 788999999988887765443 3466789999988753
Q ss_pred cCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCC
Q 010538 164 VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGR 243 (508)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g 243 (508)
|+++++ +++ +++|++|++++++||+|.+.|+++|.++|++ +|
T Consensus 137 ------------------d~~~l~--~ai------~~~tklV~vesp~NptG~v~dl~~I~~la~~------------~g 178 (427)
T PRK05994 137 ------------------DPASFE--RAI------TPRTKAIFIESIANPGGTVTDIAAIAEVAHR------------AG 178 (427)
T ss_pred ------------------CHHHHH--Hhc------CcCCeEEEEECCCCCCCeecCHHHHHHHHHH------------cC
Confidence 356677 444 4679999999999999999999999999998 89
Q ss_pred eEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc-ceEEEEe
Q 010538 244 WMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG-LGALIMR 289 (508)
Q Consensus 244 ~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G-~G~l~~~ 289 (508)
+++++|++++.+.....+ +.++|+++.|+||++|++.| +|.+++.
T Consensus 179 i~livD~a~a~~~~~~pl-~~gaDivv~S~tK~lgg~~~~~gG~v~~ 224 (427)
T PRK05994 179 LPLIVDNTLASPYLIRPI-EHGADIVVHSLTKFLGGHGNSMGGIIVD 224 (427)
T ss_pred CEEEEECCccccccCCcc-ccCCcEEEEcCccccCCCCCcEEEEEEe
Confidence 999999999876644333 56899999999999996655 6777764
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-17 Score=173.37 Aligned_cols=326 Identities=13% Similarity=0.107 Sum_probs=208.0
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+ .|.-+|.+.+++.+.+.. . ....... ......++.+.++++++. + .+++++|+
T Consensus 39 ~g~~~lD~~~~~~~~~~Gh~~~~i~~a~~~~~~~-~-~~~~~~~-----~~~~~~~l~~~l~~~~~~--~--~~~~~~SG 107 (401)
T PRK00854 39 DGNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGR-L-TLTSRAF-----RNDQLAPLYEELAALTGS--H--KVLPMNSG 107 (401)
T ss_pred CCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhh-c-ccccccc-----CCHHHHHHHHHHHhhCCC--C--EEEEeCCc
Confidence 6777888533 222388888887665432 1 1111111 123566778889999875 3 68999999
Q ss_pred HHHHHHHHhhcCC--------CCC-CeEEEec-ccccchHHHHHHHHh---------cCCeEEEEccCCccCcccccccc
Q 010538 113 TAALKLVGEAFPW--------SHQ-SSYMYTM-ENHNSVLGIREYALS---------QGAAAFAIDVEEAVDNDGLSESL 173 (508)
Q Consensus 113 t~al~~~~~~l~~--------~~g-~~vl~~~-~~h~s~~~~~~~~~~---------~G~~v~~v~~~~~~~~~~l~~~~ 173 (508)
++|+..++..+.. +.| +.|++.. .-|.+.......... ....+..+|.
T Consensus 108 s~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 174 (401)
T PRK00854 108 AEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPF------------- 174 (401)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCC-------------
Confidence 9999988877621 122 4555554 445544433321100 0011222221
Q ss_pred ccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEe
Q 010538 174 VTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLID 249 (508)
Q Consensus 174 ~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD 249 (508)
.|+++++ +.+ .+++++|++.+++|++|.+.| +++|.++|++ ||+++|+|
T Consensus 175 -------~d~~~le--~~i------~~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~------------~gi~lI~D 227 (401)
T PRK00854 175 -------GDAEALE--AAI------TPNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTA------------NNVTLILD 227 (401)
T ss_pred -------CCHHHHH--HHh------CCCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHH------------cCCEEEEe
Confidence 1467777 444 467899999999999999998 7888888887 99999999
Q ss_pred cccc-CCCCCC----CCCCCCCcEEEEeccccccCCC-cceEEEEechhHhhhccccccCceEEecccchhhhhhccCcc
Q 010538 250 AAKG-CVTQPP----DLSKYPVDFVVMSFYKIFGYPT-GLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 250 ~a~~-~g~~~~----d~~~~~~D~~~~S~~K~~g~P~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
++|+ +|..+. +......|++++| |++++-. -+|+++.+++.++.+.+...+
T Consensus 228 Ev~~g~g~~g~~~~~~~~g~~~D~~~~~--K~l~gg~~~ig~v~~~~~~~~~l~~~~~~--------------------- 284 (401)
T PRK00854 228 EIQTGLGRTGKLLAEEHEGIEADVTLIG--KALSGGFYPVSAVLSNSEVLGVLKPGQHG--------------------- 284 (401)
T ss_pred chhhCCCCCchHhHHhhcCCCCCEEEec--ccccCCccCeEEEEEcHHHHhcccCCCCC---------------------
Confidence 9998 554431 1222346888875 9877321 278899999887655432110
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEE
Q 010538 324 ELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFN 403 (508)
Q Consensus 324 ~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 403 (508)
...+ .+....++..++++.+.+ +.+.++.+++.+++.+.|+++. ......... .+.++.+.
T Consensus 285 --~t~~-~~~~~~aa~~a~L~~l~~---~~~~~~~~~~~~~l~~~L~~~~-------~~~~~~~~g------~g~~~~i~ 345 (401)
T PRK00854 285 --STFG-GNPLACAVARAALKVLTE---EGMIENAAEMGAYFLEGLRSIR-------SNIVREVRG------RGLMLAVE 345 (401)
T ss_pred --CCCC-cCHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHhhc-------cCceEEEec------cceEEEEE
Confidence 0112 255556677778887654 3356888889999999998762 111111111 15666666
Q ss_pred eeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCC
Q 010538 404 LKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMS 483 (508)
Q Consensus 404 ~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 483 (508)
+.... ....++.+.|.++||.+... ..+.+|+++++.+
T Consensus 346 ~~~~~---~~~~~~~~~L~~~GV~v~~~---------------------------------------~~~~lR~~p~~~~ 383 (401)
T PRK00854 346 LEPEA---GGARQYCEALKERGLLAKDT---------------------------------------HDHTIRLAPPLVI 383 (401)
T ss_pred EecCc---hhHHHHHHHHHHCCeEEecC---------------------------------------CCCEEEEeCCccc
Confidence 53321 12345888888899998541 1468999999999
Q ss_pred CHHHHHHHHHhhhhhh
Q 010538 484 TFEDAKVNRCSSFDFV 499 (508)
Q Consensus 484 t~eev~~l~~~~~~~~ 499 (508)
|++||+++++.+++++
T Consensus 384 t~e~i~~~i~~l~~~l 399 (401)
T PRK00854 384 TREQVDWALEQIAKVL 399 (401)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999998765
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-18 Score=160.69 Aligned_cols=350 Identities=15% Similarity=0.089 Sum_probs=234.0
Q ss_pred CCCeeeeCCC-CCCCCHHHHHHHHHHhhccccCCCCCccc-h--hh---hhhHHHHHHHHHHHHHcCCCCCCceEEEcCC
Q 010538 39 NGTVYLDHAG-ATLYSELQMEAIFRDFTTNVYGNPHSQSD-I--SL---ATCDIVRAAREQVLDYFNASMKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~--~~---~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g 111 (508)
.+.|.+|--- .+.+++.+.+++.+ +- +-.+... . |. -...-+.+..+.+++++|++ .+-+|.|
T Consensus 15 r~~iNv~PiQrGGiLt~eArkal~E-~g-----DGYSvCD~C~~Grldei~kPpI~~F~~dlaeFlg~D----~~R~t~G 84 (382)
T COG1103 15 RGFINVNPIQRGGILTEEARKALLE-WG-----DGYSVCDFCLEGRLDEITKPPIKDFLEDLAEFLGMD----EVRVTAG 84 (382)
T ss_pred cCccccChhhccCcCCHHHHHHHHH-hc-----CCcchhhhhccCccccccCCcHHHHHHHHHHHhCCc----eeeeccc
Confidence 4566666533 55567777666654 22 2222111 0 00 01122556677799999997 4689999
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCC
Q 010538 112 ATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGAS 191 (508)
Q Consensus 112 ~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~ 191 (508)
+-+|=-.++.++ .+.|+.|++....|.+.+-. +++.|..|..||-.+.... +| +++... ..
T Consensus 85 ARe~KfavMhal-~~~gd~vV~D~~aHYttyvA---AEragl~v~eVp~tg~Pey-----------~i--~~e~y~--~v 145 (382)
T COG1103 85 AREAKFAVMHAL-CKEGDWVVVDSLAHYTTYVA---AERAGLNVAEVPNTGYPEY-----------KI--TPEGYA--EV 145 (382)
T ss_pred chhhHHHHHHHh-ccCCCEEEEcCcchHHHHHH---HHhcCCeEEecCCCCCCce-----------Ee--cHHHHH--HH
Confidence 999999999999 68899999998888765544 3456999999996542221 00 344433 22
Q ss_pred CCCC-CCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEE
Q 010538 192 FPER-DPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVV 270 (508)
Q Consensus 192 l~~~-~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~ 270 (508)
|++- ...++.+.+..++|+....|.+.|.+.++++|++ +|+++++.++++.|.+|++.++.++||++
T Consensus 146 iee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e------------~gvPlllN~AYt~Grmpvs~ke~g~DFiV 213 (382)
T COG1103 146 IEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICRE------------YGVPLLLNCAYTVGRMPVSGKEIGADFIV 213 (382)
T ss_pred HHHHHhccCCCceEEEEeccCCCcCCchhhHHHHHHHHH------------cCCceEeecceeeccccccccccCCCEEE
Confidence 2211 1123568999999999999999999999999998 99999999999999999999999999999
Q ss_pred EeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcC
Q 010538 271 MSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLT 350 (508)
Q Consensus 271 ~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g 350 (508)
+|+||.++.-+-+|+|-++.+..+..-+.. +. .|. ..+--+-.+|.-...++.+.+++-...+.
T Consensus 214 gSGHKsmAAs~PiGvl~~~eE~ae~V~r~S--g~---------~~~----~KEvellGCT~rGapivTlmASfP~V~eR- 277 (382)
T COG1103 214 GSGHKSMAASAPIGVLAMSEEWAEIVLRRS--GR---------AFP----KKEVELLGCTVRGAPIVTLMASFPHVVER- 277 (382)
T ss_pred ecCccchhccCCeeEEeehhHHHHHHHhhc--cc---------ccc----cceeeeecccccCchHHHHHhcCHHHHHH-
Confidence 999997773323999999998866433221 10 000 00111223444444566666676654432
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCC-------CCCccCHHHHHHHHhh
Q 010538 351 VPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRP-------DGSWFGYREVEKLASL 423 (508)
Q Consensus 351 ~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~~~~l~~~L~~ 423 (508)
-..+....+.++++.++|+++. |++.++.... .--.+.|..+.. +... ..+.+.|++
T Consensus 278 -VkrWdeEv~kaR~fv~elEkig------g~~qlG~rPk------~HdLm~Fetp~f~eIakk~~r~g---yFlY~ELK~ 341 (382)
T COG1103 278 -VKRWDEEVEKARWFVAELEKIG------GVKQLGERPK------NHDLMKFETPVFHEIAKKHKRKG---YFLYEELKK 341 (382)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhh------hHHHhCCCCc------ccceeeecCchHHHHHHhCcCCc---eeeHHHHHh
Confidence 2334555677899999999983 5777765432 234555654421 1111 137888999
Q ss_pred CCCe-eccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 424 SGIQ-LRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 424 ~gI~-v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
+||. +++|. ..++.+|+- --+.|+|++++++++++++.
T Consensus 342 RgI~GI~~G~---------------------------------------Tk~~K~svy-Gl~~Eqve~V~~afkeI~ek 380 (382)
T COG1103 342 RGIHGIQPGQ---------------------------------------TKYFKLSVY-GLSWEQVEYVVDAFKEIAEK 380 (382)
T ss_pred cCccccccCc---------------------------------------eeEEEEEee-cCCHHHHHHHHHHHHHHHHh
Confidence 9887 44432 467888864 35899999999999998863
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.8e-18 Score=175.35 Aligned_cols=233 Identities=12% Similarity=0.051 Sum_probs=162.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHH-HHHHhcCCeEEEEccCC
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIR-EYALSQGAAAFAIDVEE 162 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~-~~~~~~G~~v~~v~~~~ 162 (508)
...+.+++.+|++.|++.. ++++|+++|+.+++. + .++|++|+++...|++..... ..++..|++++.++..
T Consensus 52 pt~~~le~~la~l~g~~~~----~~~~sG~~ai~~~~~-l-l~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~- 124 (366)
T PRK08247 52 PTRGVLEQAIADLEGGDQG----FACSSGMAAIQLVMS-L-FRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTA- 124 (366)
T ss_pred chHHHHHHHHHHHhCCCcE----EEEcCHHHHHHHHHH-H-hCCCCEEEEecCCcCcHHHHHHHHhhccCceEEEECCC-
Confidence 4467889999999999754 556777889988764 4 478899999988888765543 3566789999998753
Q ss_pred ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC
Q 010538 163 AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG 242 (508)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~ 242 (508)
|++.++ +++ +++|++|++++++||+|.+.++++|.++|++ +
T Consensus 125 -------------------d~~~l~--~~i------~~~tklv~le~P~NP~~~~~dl~~I~~la~~------------~ 165 (366)
T PRK08247 125 -------------------SLKAIE--QAI------TPNTKAIFIETPTNPLMQETDIAAIAKIAKK------------H 165 (366)
T ss_pred -------------------CHHHHH--Hhc------ccCceEEEEECCCCCCCcHHHHHHHHHHHHH------------c
Confidence 356777 444 4678999999999999999999999999998 8
Q ss_pred CeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEe-chhHhhhccccccCceEEecccchhhhhhc
Q 010538 243 RWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMR-NDAAKLLKNTYFSGGTVAASIADIDFVKRR 319 (508)
Q Consensus 243 g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~ 319 (508)
|+++++|.+++.+.....+ ..++|+++.|++|+++++.+ .|+++.+ +++.+.+.....
T Consensus 166 g~~lIvD~t~~~~~~~~p~-~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~------------------ 226 (366)
T PRK08247 166 GLLLIVDNTFYTPVLQRPL-EEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQN------------------ 226 (366)
T ss_pred CCEEEEECCCccccccCch-hcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHH------------------
Confidence 9999999998655432222 34789999999999986644 4777765 445444332210
Q ss_pred cCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCce
Q 010538 320 QGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSM 399 (508)
Q Consensus 320 ~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (508)
......+....+.+..+++. +..+.++.++.++.+.+.|++. |++..+..++. +++
T Consensus 227 ------~~g~~~s~~~a~l~~~~l~t-----l~~r~~~~~~~a~~l~~~L~~~------p~v~~v~~P~~-------gg~ 282 (366)
T PRK08247 227 ------AAGAVLSPFDSWLLIRGMKT-----LALRMRQHEENAKAIAAFLNEQ------PGVTDVLYPGR-------GGM 282 (366)
T ss_pred ------hcCCCCChHHHHHHHhccCc-----HHHHHHHHHHHHHHHHHHHHhC------CCeeEEecCCc-------CcE
Confidence 00112222222222223332 3455566788899999999887 36764333322 788
Q ss_pred EEEEee
Q 010538 400 VSFNLK 405 (508)
Q Consensus 400 v~~~~~ 405 (508)
++|.++
T Consensus 283 ~sf~~~ 288 (366)
T PRK08247 283 LSFRLQ 288 (366)
T ss_pred EEEEEC
Confidence 999875
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7e-18 Score=175.48 Aligned_cols=315 Identities=10% Similarity=-0.022 Sum_probs=199.5
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHH-HHHHhcCCeEEEEccC
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIR-EYALSQGAAAFAIDVE 161 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~-~~~~~~G~~v~~v~~~ 161 (508)
....+++++.++++.|.+ .+++++|+++|+.+++.++ .++|++||++...|+++.... ..+...|++++.++..
T Consensus 64 ~pt~~~Le~~lA~l~g~~----~~l~~~sgt~Ai~~~l~al-~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~ 138 (394)
T PRK07050 64 TPTSLALAQRLAEIEGGR----HALLQPSGLAAISLVYFGL-VKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPL 138 (394)
T ss_pred CHHHHHHHHHHHHHhCCC----eEEEeccHHHHHHHHHHHH-hCCCCEEEEecCCcccHHHHHHHHHHhcCeEEEEECCC
Confidence 344678899999999964 6899999999999999998 789999999999998776544 3456789999988643
Q ss_pred CccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCC
Q 010538 162 EAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK 241 (508)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~ 241 (508)
. .++++ +++ .++|++|++++++||+|.+.|+++|.++|++
T Consensus 139 ~--------------------~~~l~--~~i------~~~tklV~le~p~Np~~~~~di~~I~~ia~~------------ 178 (394)
T PRK07050 139 I--------------------GAGIA--DLI------QPNTRLIWLEAPGSVTMEVPDVPAITAAARA------------ 178 (394)
T ss_pred C--------------------HHHHH--Hhc------CCCCeEEEEECCCCCCccHhhHHHHHHHHHH------------
Confidence 1 23456 333 5689999999999999999999999999998
Q ss_pred CCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEe-chhHhhhccccccCceEEecccchhhhhh
Q 010538 242 GRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMR-NDAAKLLKNTYFSGGTVAASIADIDFVKR 318 (508)
Q Consensus 242 ~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~ 318 (508)
+|+++++|++++.|.. ....+.++|+++.|++|++++..+ .|+++.+ +++.++++....
T Consensus 179 ~gi~livD~a~a~~~~-~~~l~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~----------------- 240 (394)
T PRK07050 179 RGVVTAIDNTYSAGLA-FKPFEHGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARM----------------- 240 (394)
T ss_pred cCCEEEEECCcccccc-cCHHHcCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHH-----------------
Confidence 8999999999988754 223344789999999998875444 4666664 445444432210
Q ss_pred ccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceE-EEecCCCCC-------
Q 010538 319 RQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVC-TIYGTYTSE------- 390 (508)
Q Consensus 319 ~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~-~~~~~~~~~------- 390 (508)
...++.+... ...+++-+. .+..+.++..+.+..+.+.|++.+ .+ +++-|.-..
T Consensus 241 -------~~G~~~~~~~---a~l~lr~l~--tl~~Rl~~~~~~a~~la~~L~~~p------~v~~v~~p~l~~~p~~~~~ 302 (394)
T PRK07050 241 -------RLGIGVSADD---CSLVLRGLP--SLQVRLAAHDRSALEVAEWLKARP------EIATVLHPALPDCPGHAFW 302 (394)
T ss_pred -------hcCCCCCHHH---HHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHhCC------CccEEECCCCCCCccHHHH
Confidence 1112222211 112222111 244456666777778888887763 33 233221000
Q ss_pred cc-cCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCC
Q 010538 391 VS-YHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHG 469 (508)
Q Consensus 391 ~~-~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 469 (508)
.. -..-+++++|.+++.... -....+.+.|+..++.++-|...+.-.. ...++ + .|. +. .
T Consensus 303 ~~~~~~~g~~~s~~l~~~~~~-~~~~~~~~~l~~~~~~~s~G~~~sl~~~-----~~~~~----~--~~~---~~---~- 363 (394)
T PRK07050 303 MRDFTGAGGLFSVVFDERYSP-AQVDAFVEALELFAIGWSWGGACSLAMP-----YDVAS----M--RTA---KW---P- 363 (394)
T ss_pred HHhCCCCceEEEEEECCCCCH-HHHHHHHHcCCCCeeccccCCccceEee-----Ccccc----c--chh---hc---C-
Confidence 00 001367899998642111 1224566777777777777753332100 00000 0 010 00 0
Q ss_pred CCCceEEEecCCCCCHHHHHHHHHhhhh
Q 010538 470 KPTGAIRVSFGYMSTFEDAKVNRCSSFD 497 (508)
Q Consensus 470 ~~~~~iRis~~~~~t~eev~~l~~~~~~ 497 (508)
..++.||+|++.-+-++=++.+.++|..
T Consensus 364 ~~~~~iR~svGlE~~~dl~~dl~~al~~ 391 (394)
T PRK07050 364 HRGTLVRLYIGLEDEADLIADLEQALEA 391 (394)
T ss_pred CCCCEEEEEeCcCCHHHHHHHHHHHHHH
Confidence 2358899999986655555555555543
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-17 Score=177.59 Aligned_cols=393 Identities=13% Similarity=0.054 Sum_probs=246.2
Q ss_pred eeeeCCCCCCCCHHHHHHHHHHhhccccCCCC-CccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHH
Q 010538 42 VYLDHAGATLYSELQMEAIFRDFTTNVYGNPH-SQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVG 120 (508)
Q Consensus 42 iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~ 120 (508)
.|+.+--+.+.+|.++..++.... |++ ..+..++.+..+.+++.+++++++|.+.. .-.||+|+|+|+..++
T Consensus 85 ry~ghm~~~~~~paila~~~a~~~-----N~n~~~~e~SP~~t~lE~~vi~~la~l~G~~~~--~G~~TsGGT~ANl~aL 157 (608)
T TIGR03811 85 RYWGHMNSETLMPAILAYNYAMLW-----NGNNVAYESSPATSQMEEEVGKEFATLMGYKNG--WGHIVADGSLANLEGL 157 (608)
T ss_pred ceEEECcCCCCHHHHHHHHHHHHh-----CCCCCccccCchHHHHHHHHHHHHHHHhCCCCC--CeEEeCChHHHHHHHH
Confidence 688888777767766655544332 333 23445566778888999999999999876 6789999999986533
Q ss_pred hhcCC--------C-------------------------------------------CC------CeEEEecccccchHH
Q 010538 121 EAFPW--------S-------------------------------------------HQ------SSYMYTMENHNSVLG 143 (508)
Q Consensus 121 ~~l~~--------~-------------------------------------------~g------~~vl~~~~~h~s~~~ 143 (508)
..... + +| -+++++...|.|+..
T Consensus 158 ~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~K 237 (608)
T TIGR03811 158 WYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLK 237 (608)
T ss_pred HHHHHhhhccchhhhccccccccccchhhcccccccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHH
Confidence 32110 0 00 157888888998887
Q ss_pred HHHHHHhcCC---eEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCH
Q 010538 144 IREYALSQGA---AAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNL 220 (508)
Q Consensus 144 ~~~~~~~~G~---~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i 220 (508)
....+ |+ .++.||++.++.+ |++.++ +.|++....+..+-.|+.+..++.+|.+.|+
T Consensus 238 Aa~il---GlG~~~vv~VpvD~~~rm---------------d~~~L~--~~I~~~~~~g~p~~~VVataGTT~~GaiDpl 297 (608)
T TIGR03811 238 AADII---GIGLDQVIPVPVDSNYRM---------------DINELE--KIIRKLAAEKTPILGVVGVVGSTEEGAVDGI 297 (608)
T ss_pred HHHHc---CCCcccEEEeecCCCCcC---------------CHHHHH--HHHHHHHhcCCCeEEEEEEcCCcCCcccCCH
Confidence 77765 65 5899999988887 688887 6664322233455678889999999999999
Q ss_pred HHHHHHHcCCccccccCCCCCCCe--EEEEeccccCCC-----------CCCC-----------C---------------
Q 010538 221 DLINIMKKNPERILEISPFSKGRW--MVLIDAAKGCVT-----------QPPD-----------L--------------- 261 (508)
Q Consensus 221 ~~i~~l~~~~~~~~~~~~~~~~g~--~vivD~a~~~g~-----------~~~d-----------~--------------- 261 (508)
++|.++|++ ++++|+ ++|||+|++... .|.+ +
T Consensus 298 ~eI~~l~~~---------~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l 368 (608)
T TIGR03811 298 DKIVALRNK---------LMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAY 368 (608)
T ss_pred HHHHHHHHH---------HHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccccccccccccccHhHHHHH
Confidence 999999953 123687 799999998632 1110 0
Q ss_pred CC-CCCcEEEEeccccccCCCcceEEEEechhHhhh----ccccccCceEEecccchhhhhhccCccccccCCCCChhHH
Q 010538 262 SK-YPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLL----KNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSI 336 (508)
Q Consensus 262 ~~-~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~ 336 (508)
+. ..+|.++.++|||+..|.++|++++++..+... .+++...+. .. +..-... ..-|+.+....
T Consensus 369 ~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~~~~~~~~~~a~Yl~~~~~--------~~--p~~~g~~-~legSR~ga~A 437 (608)
T TIGR03811 369 KAISEAESVTIDPHKMGYIPYSAGGIVIQDIRMRDVISYFATYVFEKGA--------DI--PALLGAY-ILEGSKAGATA 437 (608)
T ss_pred hcCcCceEEEeCcccccccCCCeEEEEEeCHHHHHHHhcCcchhccccc--------cC--ccccccc-ceecCCccHHH
Confidence 01 268999999999877799999999998753221 111111000 00 0000011 12244444557
Q ss_pred HHHHHHHHHH--HhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEE--ecCCCCCcccCCCCceEEEEeeCCCCCcc
Q 010538 337 ASIRHGFNLI--NSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTI--YGTYTSEVSYHDTGSMVSFNLKRPDGSWF 412 (508)
Q Consensus 337 ~~l~~al~~~--~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 412 (508)
++++.+++.+ ...|+.++..+..++++++.+.|.+....-..+.+++ +.++. .++|+|++.......+
T Consensus 438 lklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~~~~~~~~~~el~~~~~pd--------lniV~Fr~~~~g~~~l 509 (608)
T TIGR03811 438 ASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNLEFKVGDKEIEVHPLTKPD--------FNMVDYVFNEKGNDDL 509 (608)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEecCCCC--------cceEEEEEecCCCccH
Confidence 7788888887 6678999999999999999999987410000134665 44444 7999999853322111
Q ss_pred -CHH----HHHHHHh-------hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecC
Q 010538 413 -GYR----EVEKLAS-------LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFG 480 (508)
Q Consensus 413 -~~~----~l~~~L~-------~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~ 480 (508)
... .+.+.+. ..-..++...++...+ |..+-.+.+-+|..-.-|.+ ..+-..+|-++.
T Consensus 510 ~~~n~ln~~i~~~~~~~~g~~~~~~~~~s~t~~~~~~y-----g~~~~~~~~~~~~~~~~~~~-----~~~~~~lr~~~m 579 (608)
T TIGR03811 510 VKMNKLNHAFYDYASYVKGSIYNNEFITSHTDFAIPDY-----GDSPFAFVNSLGFSDEEWQR-----AGKVTILRASVM 579 (608)
T ss_pred HHHHHHHHHHHHhhccccCCCCCcceEeeecccccchh-----hhhHHHHHHHcCCChhhhcc-----CCceEEEEEEec
Confidence 112 2333333 1223333333333332 22333445555554222222 123467999987
Q ss_pred --CCCCHHHHHHHHHhhhhhh
Q 010538 481 --YMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 481 --~~~t~eev~~l~~~~~~~~ 499 (508)
+.++.+-++.++..+++.+
T Consensus 580 ~p~~~~~~~~~~~~~~~~~~~ 600 (608)
T TIGR03811 580 TPYMNDKENFDEYAPKIKAAM 600 (608)
T ss_pred CcccCChhhHHHHHHHHHHHH
Confidence 5577788888888877643
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.6e-18 Score=167.61 Aligned_cols=355 Identities=12% Similarity=0.081 Sum_probs=241.6
Q ss_pred chHHHHHHhhccCC--------CCCeeeeC--CCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHH
Q 010538 25 SIDQIRATEFKRLE--------NGTVYLDH--AGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVL 94 (508)
Q Consensus 25 ~~~~~r~~~f~~~~--------~~~iyld~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la 94 (508)
.+.++.+ +||.-. +=.+|..| -+.+. +|.+.+++.+.+.+...+.-+..+..| ......++++.+|
T Consensus 151 ~vNRlA~-~fP~A~~~se~t~k~VtVWCSNDYLgms~-Hp~V~~A~~~tl~~hG~GAGGTRNIsG--~s~~hv~LE~eLA 226 (570)
T KOG1360|consen 151 NVNRLAK-EFPLAHRYSEATEKKVTVWCSNDYLGMSR-HPEVLDAMHDTLDRHGAGAGGTRNISG--HSKHHVRLEAELA 226 (570)
T ss_pred HHhHhhh-hccchhhccccccCceEEEecCccccccC-ChHHHHHHHHHHHHcCCCcCCccccCC--CCchhhhHHHHHH
Confidence 6777877 999752 11355544 44443 888999987766443222222233333 4556677889999
Q ss_pred HHcCCCCCCceEEEcCChHHHHHHHHhhc-CCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCcccccccc
Q 010538 95 DYFNASMKDYKCIFTSGATAALKLVGEAF-PWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESL 173 (508)
Q Consensus 95 ~~~~~~~~~~~i~~t~g~t~al~~~~~~l-~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~ 173 (508)
++-+-+.. ++|+++.- |+...+..| ..-+|.+|...+.+|.|.+..++-. ++.=.....+
T Consensus 227 ~LHqK~aA---LlFsSCfV-ANDstLftLak~lpgcei~SD~gNHASMI~GIrns---~v~K~IFrHN------------ 287 (570)
T KOG1360|consen 227 DLHQKEAA---LLFSSCFV-ANDSTLFTLAKKLPGCEIFSDEGNHASMIQGIRNS---RVPKHIFRHN------------ 287 (570)
T ss_pred HHhcCcce---eeeeeeee-ccchHHHHHHHHCCCcEEeccccchHHHHHHhhhc---CCcceeeccC------------
Confidence 99998876 77776654 444333333 2346899999999998876655432 3221111222
Q ss_pred ccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEecccc
Q 010538 174 VTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKG 253 (508)
Q Consensus 174 ~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~ 253 (508)
|++.++ +.|.+ .....+|+|++..+++++|.+.|+++|++++|+ +|++.++|++|+
T Consensus 288 --------D~~hL~--~lL~~--~~~svPKivAFEtVhSM~GavcpleelcDvah~------------yGAiTFlDEVHA 343 (570)
T KOG1360|consen 288 --------DLDHLE--QLLQS--SPKSVPKIVAFETVHSMDGAVCPLEELCDVAHK------------YGAITFLDEVHA 343 (570)
T ss_pred --------CHHHHH--HHHHh--CCCCCCceEEEeeeeccCCCcCCHHHHHHHHHH------------hCceeeeehhhh
Confidence 233334 33322 123457999999999999999999999999998 999999999988
Q ss_pred CCCCC--------CCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCcccc
Q 010538 254 CVTQP--------PDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEEL 325 (508)
Q Consensus 254 ~g~~~--------~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 325 (508)
+|..- -|---..+|++.+++-|.|| --| |++-....+++.++.+..|.
T Consensus 344 VGlYG~rGaGvgerdGvm~kvDiIsGTLgKafG-cVG-GYIAat~~LvDmiRSyAaGF---------------------- 399 (570)
T KOG1360|consen 344 VGLYGPRGAGVGERDGVMHKVDIISGTLGKAFG-CVG-GYIAATRKLVDMIRSYAAGF---------------------- 399 (570)
T ss_pred hccccCCCCCccccCCcchhhhhcccchhhhcc-ccc-ceehhhhhHHHHHHHhcCce----------------------
Confidence 64321 11111258999999999999 445 88888888888766553221
Q ss_pred ccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEee
Q 010538 326 FEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLK 405 (508)
Q Consensus 326 ~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 405 (508)
....+.+...+++.-.+++++...--..+++..++..+|+++.|.++ |+.++..+ ++|+.+++.
T Consensus 400 IFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~-------GiPVi~~p---------SHIiPv~vg 463 (570)
T KOG1360|consen 400 IFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMEL-------GIPVIPNP---------SHIIPVRVG 463 (570)
T ss_pred EEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHc-------CCcccCCC---------cceeeeecc
Confidence 11234556667777788888765433566677788899999999887 77777544 799999987
Q ss_pred CCCCCccCHHHHHH-HHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCC
Q 010538 406 RPDGSWFGYREVEK-LASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMST 484 (508)
Q Consensus 406 ~~~~~~~~~~~l~~-~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t 484 (508)
+.... ..+.. ++.++||.|....+.+.+. ....+||++...+|
T Consensus 464 da~l~----~~~sd~Li~~h~iYvQaINyPTV~r--------------------------------G~E~LRiaPTP~HT 507 (570)
T KOG1360|consen 464 DAALA----KQASDILISKHNIYVQAINYPTVAR--------------------------------GTERLRIAPTPHHT 507 (570)
T ss_pred CHHHH----HHHHHHHHHhcCeEEEeccCCcccc--------------------------------cceeeecCCCCCCC
Confidence 64321 12343 5578899999887666543 25679999999999
Q ss_pred HHHHHHHHHhhhhhhhhh
Q 010538 485 FEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 485 ~eev~~l~~~~~~~~~~~ 502 (508)
.+-++.|++.+.+..+.+
T Consensus 508 ~~mm~~lv~~l~~vw~~v 525 (570)
T KOG1360|consen 508 PQMMNILVNALLDVWNEV 525 (570)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999998876544
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.7e-18 Score=177.56 Aligned_cols=160 Identities=10% Similarity=0.028 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHH-HHHHhcCCeEEEEccCC
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIR-EYALSQGAAAFAIDVEE 162 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~-~~~~~~G~~v~~v~~~~ 162 (508)
...+++++.+|++.|.+. .++++++++|+.+++.++ .++|++|+++...|++..... ..+...|+++..++..
T Consensus 58 pt~~~Le~~lA~l~g~~~----~l~~ssG~~Ai~~al~al-~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~~- 131 (425)
T PRK06084 58 PTNDVLEQRVAALEGGVG----ALAVASGMAAITYAIQTI-AEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAHD- 131 (425)
T ss_pred chHHHHHHHHHHHhCCCc----eeEehhHHHHHHHHHHHH-hCCCCEEEEeCCCcchHHHHHHHhcccceeEEEEECCC-
Confidence 346678999999999753 456778889999999988 678999999987777544333 3333457777766542
Q ss_pred ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC
Q 010538 163 AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG 242 (508)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~ 242 (508)
|+++++ +++ .++|++|++++++||+|.+.|+++|.++|++ +
T Consensus 132 -------------------d~e~le--~ai------~~~tklV~lesp~NPtG~v~dl~~I~~la~~------------~ 172 (425)
T PRK06084 132 -------------------DIAALE--ALI------DERTKAVFCESIGNPAGNIIDIQALADAAHR------------H 172 (425)
T ss_pred -------------------CHHHHH--HHh------ccCCcEEEEeCCCCCCCeecCHHHHHHHHHH------------c
Confidence 366777 444 4578999999999999999999999999998 8
Q ss_pred CeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc-ceEEEEe
Q 010538 243 RWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG-LGALIMR 289 (508)
Q Consensus 243 g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G-~G~l~~~ 289 (508)
|+++|+|++++.+...-.+ +.++|+++.|++|+++++.. +|.+++.
T Consensus 173 ~i~vVvD~a~a~~~~~~p~-~~gaDivv~S~tK~l~G~g~~~gG~v~~ 219 (425)
T PRK06084 173 GVPLIVDNTVATPVLCRPF-EHGADIVVHSLTKYIGGHGTSIGGIVVD 219 (425)
T ss_pred CCEEEEECCCcccccCChh-hcCCCEEEECchhcccccccceeEEEEe
Confidence 9999999999877553333 56899999999999996643 5666664
|
|
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-17 Score=162.20 Aligned_cols=346 Identities=16% Similarity=0.113 Sum_probs=230.3
Q ss_pred CCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCC---ccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEc-CChHHH
Q 010538 40 GTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHS---QSDISLATCDIVRAAREQVLDYFNASMKDYKCIFT-SGATAA 115 (508)
Q Consensus 40 ~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t-~g~t~a 115 (508)
....|..+... +|+.|++.+.+.+. ++.+.-.+ ....+........++++.+.+++++|.+ |+|.|. .|+|..
T Consensus 5 ~~~nFsaGPa~-lp~~vL~~a~~e~~-~~~g~g~svme~SHRsk~~~~v~~~a~~~lreLl~iPd~-Y~VlflqGGat~q 81 (365)
T COG1932 5 RVYNFSAGPAA-LPPEVLQQAQKELL-DWNGLGMSVMEISHRSKEFKNVLEEAEKDLRELLNIPDD-YKVLFLQGGATGQ 81 (365)
T ss_pred CCCCCCCCccc-CCHHHHHHHHHHHh-hhccCCcceeeeccccHHHHHHHHHHHHHHHHHhCCCCC-ceEEEEcCccHHH
Confidence 34455544444 58888887766553 33321111 2223455678899999999999999865 899888 567777
Q ss_pred HHHHHhhcCCCCCC-eEEEecccccchHHHHHHHHhcCCeEEEEcc--C--CccCccccccccccccccccchhhhhcCC
Q 010538 116 LKLVGEAFPWSHQS-SYMYTMENHNSVLGIREYALSQGAAAFAIDV--E--EAVDNDGLSESLVTSTKISLLPIQRRKGA 190 (508)
Q Consensus 116 l~~~~~~l~~~~g~-~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~--~--~~~~~~~l~~~~~~~~~~~~d~~~l~~~~ 190 (508)
+.++...|....+. .|.+...+..++- .++..+..+..+.. . +.+.+. +++...
T Consensus 82 f~~~p~nLl~~~~~~yv~~g~Ws~~a~~----eA~~~~~~~~~~~~~~~~~~~~~iP--------------~~~~~~--- 140 (365)
T COG1932 82 FAMAPMNLLGKRGTDYVDTGAWSEFAIK----EAKKVGKQPKLIDARIEEAGYGSIP--------------DLSKWD--- 140 (365)
T ss_pred HHHHHHhhhcccCceeEeeeehhHhHHH----HHHHhcccccccccceeccCccCCC--------------Chhhcc---
Confidence 88888888433332 3555544443332 23333422222211 1 122331 222222
Q ss_pred CCCCCCCCCCCceEEEEeCCCCCCccccCHH-HHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEE
Q 010538 191 SFPERDPAGDAYNLFAFPSECNFSGSRFNLD-LINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFV 269 (508)
Q Consensus 191 ~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~-~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~ 269 (508)
..++...|.+++..+.+|+.+|.. .+. .+.++++|+++....+++|+++ .|++
T Consensus 141 -------~~~~~ayv~~~~NeTi~Gv~v~~~p~~~-----------------~~~~~v~D~SS~ilsr~iDvsk--~dvi 194 (365)
T COG1932 141 -------FSDNDAYVHFCWNETISGVEVPELPDIG-----------------SDGLLVADASSAILSRPIDVSK--YDVI 194 (365)
T ss_pred -------cCCCccEEEEecCCcccceEccCCCCCC-----------------CCceEEEecccHHhcCCCChhH--cceE
Confidence 223357789999999999998831 111 2389999999999999999997 7899
Q ss_pred EEeccccccCCCcceEEEEechhHhhhccc-cccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHh
Q 010538 270 VMSFYKIFGYPTGLGALIMRNDAAKLLKNT-YFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINS 348 (508)
Q Consensus 270 ~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~ 348 (508)
+++.+|.+| |.|++++++++++++++.+. ++.. .++. .........-||++..++.+..+++|+.+
T Consensus 195 yagaQKnlG-paGltvvIvr~~~l~r~~~~~~P~i---------f~y~---~~~~~~s~yNTPptfa~y~~~lv~~Wlk~ 261 (365)
T COG1932 195 YAGAQKNLG-PAGLTVVIVRPDLLERAESYTLPSI---------FDYL---THADNGSMYNTPPTFAWYLLGLVFKWLKS 261 (365)
T ss_pred EEehhhccC-ccceEEEEEcHHHHhcccccCCchH---------hhch---hhhccCCccCCcHHHHHHHHHHHHHHHHH
Confidence 999999999 99999999999999887654 2211 1111 11123334467777777788888999887
Q ss_pred c-ChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCe
Q 010538 349 L-TVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQ 427 (508)
Q Consensus 349 ~-g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~ 427 (508)
. |++.+.+|..+.++.|.+.+.+.. -++-.-.+. .|+-..|+|.+.+.+ ++. .+.+.++++|..
T Consensus 262 ~GGl~~~~~rn~~ka~~LY~~id~s~------fy~~~v~~~-----~RS~mnV~f~~~~~~---ld~-~fv~eae~~gl~ 326 (365)
T COG1932 262 QGGLEALEARNQAKAQLLYDWIDKSD------FYRNLVAKA-----NRSRMNVTFTLVDAE---LDK-GFVAEAEAAGLI 326 (365)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhCC------ccccccchh-----hccceeEEEEcCcHH---HHH-HHHHHHHHcCCc
Confidence 4 799999999999999999998863 122221223 344678888887432 333 366777788888
Q ss_pred eccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 428 LRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 428 v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
..-|+ +..|.+|+|+..-...|+|+.|++.|++|.+
T Consensus 327 ~lkGh-------------------------------------r~vgGmRasiynA~~~e~veaL~~fm~~f~~ 362 (365)
T COG1932 327 YLKGH-------------------------------------RSVGGLRASIYNAVPLEDVEALTDFMDWFEE 362 (365)
T ss_pred eeccc-------------------------------------cCCCceeeeeecCCCHHHHHHHHHHHHHHHH
Confidence 76652 1245699999999999999999999998865
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-17 Score=171.79 Aligned_cols=323 Identities=12% Similarity=0.075 Sum_probs=205.9
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..+ .|--+|.+++++.+.+. .. ....... ......++.++++++.+. + .+.|++++
T Consensus 38 ~G~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~-~~-~~~~~~~-----~~~~~~~l~~~l~~~~~~--~--~~~~~~SG 106 (396)
T PRK04073 38 EGNRYMDMLSAYSAVNQGHRHPKIIQALKDQAD-KV-TLTSRAF-----HSDQLGPWYEKVAKLTGK--D--MVLPMNTG 106 (396)
T ss_pred CCCEEEEcCCCHHhccCCCCCHHHHHHHHHHHh-hc-ccccccc-----CCHHHHHHHHHHHhcCCC--C--eEEEcCCh
Confidence 6788999843 34458889888766543 21 1111111 123345567778887754 4 68999999
Q ss_pred HHHHHHHHhhcC-C--------CCCCeEEEecc-cccchHHHHHHHHhcCC---------eEEEEccCCccCcccccccc
Q 010538 113 TAALKLVGEAFP-W--------SHQSSYMYTME-NHNSVLGIREYALSQGA---------AAFAIDVEEAVDNDGLSESL 173 (508)
Q Consensus 113 t~al~~~~~~l~-~--------~~g~~vl~~~~-~h~s~~~~~~~~~~~G~---------~v~~v~~~~~~~~~~l~~~~ 173 (508)
++|+..++.... + .+++.|++... -|......+......+. .+..+|.
T Consensus 107 seA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 173 (396)
T PRK04073 107 AEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPY------------- 173 (396)
T ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCC-------------
Confidence 999988777542 1 23356666654 44444443332210000 0111221
Q ss_pred ccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEe
Q 010538 174 VTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLID 249 (508)
Q Consensus 174 ~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD 249 (508)
.|+++++ +.+ .+++++|+++.++|++|.+.| +++|.++|++ +|+++|+|
T Consensus 174 -------~d~~~l~--~~i------~~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~------------~g~lli~D 226 (396)
T PRK04073 174 -------GDLEALK--AAI------TPNTAAFLVEPIQGEAGINIPPEGFLKAARELCKE------------ENVLFIAD 226 (396)
T ss_pred -------CCHHHHH--Hhc------ccCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHH------------cCCEEEEe
Confidence 1466777 444 457899999999999999998 5678887876 99999999
Q ss_pred cccc-CCCC----CCCCCCCCCcEEEEeccccccCCC-cceEEEEechhHhhhccccccCceEEecccchhhhhhccCcc
Q 010538 250 AAKG-CVTQ----PPDLSKYPVDFVVMSFYKIFGYPT-GLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 250 ~a~~-~g~~----~~d~~~~~~D~~~~S~~K~~g~P~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
++|+ +|.. ..+......|++++ +|.+|++. -+|++++++++.+.+.+...+
T Consensus 227 Ev~~g~g~~g~~~~~~~~~~~pdi~~~--sK~lg~gg~~ig~~~~~~~i~~~~~~~~~~--------------------- 283 (396)
T PRK04073 227 EIQTGLGRTGKLFACDWDNVTPDMYIL--GKALGGGVFPISCVAANRDILGVFTPGSHG--------------------- 283 (396)
T ss_pred cchhCCCcCcHHHHhhhcCCCCCEEEe--cccccCCCCcceEEEEcHHHHhhhcCCCCC---------------------
Confidence 9987 3321 12333345787775 59888441 289999999887665432110
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEE
Q 010538 324 ELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFN 403 (508)
Q Consensus 324 ~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 403 (508)
.. .+.+....++..++++.+.+. .+.++..+++++|.+.|+++.. +.+..+.+ .+.++.+.
T Consensus 284 --~t-~~~~~~~~aaa~aaL~~~~~~---~l~~~~~~~~~~l~~~L~~l~~----~~i~~~~~---------~g~~~~~~ 344 (396)
T PRK04073 284 --ST-FGGNPLACAVSIAALEVLEEE---KLPERSLELGEYFKEQLKEIDN----PMIKEVRG---------RGLFIGVE 344 (396)
T ss_pred --CC-CCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHhhcC----Ccccceec---------ceEEEEEE
Confidence 01 112445566666788876553 4567788899999999987621 12221111 26777777
Q ss_pred eeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCC
Q 010538 404 LKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMS 483 (508)
Q Consensus 404 ~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 483 (508)
++.. ...+.+.|.++||.+.+. .+++||+++++.+
T Consensus 345 ~~~~------~~~~~~~l~~~Gv~~~~~---------------------------------------~~~~iRi~p~l~~ 379 (396)
T PRK04073 345 LNEP------ARPYCEALKEEGLLCKET---------------------------------------HETVIRFAPPLVI 379 (396)
T ss_pred ecch------HHHHHHHHHHCCeEEecC---------------------------------------CCCEEEEECCccc
Confidence 7531 234778888899998641 1468999999999
Q ss_pred CHHHHHHHHHhhhhhh
Q 010538 484 TFEDAKVNRCSSFDFV 499 (508)
Q Consensus 484 t~eev~~l~~~~~~~~ 499 (508)
|.||++++++.|++++
T Consensus 380 t~e~i~~~~~~l~~~l 395 (396)
T PRK04073 380 TKEELDWAFEKIKAVL 395 (396)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999998764
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-17 Score=172.92 Aligned_cols=313 Identities=11% Similarity=-0.032 Sum_probs=192.7
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHH-HHHHhcCCeEEEEccC
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIR-EYALSQGAAAFAIDVE 161 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~-~~~~~~G~~v~~v~~~ 161 (508)
....+.+++.++.+-+.+.. ++++++++|++.++.++ +++|++||++...|+++.... ..+++.|+++..++.+
T Consensus 63 nPt~~~Le~~la~le~~~~~----v~~sSG~aAi~~~l~al-l~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~ 137 (395)
T PRK05967 63 TPTTDALCKAIDALEGSAGT----ILVPSGLAAVTVPFLGF-LSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDPE 137 (395)
T ss_pred ChHHHHHHHHHHHHhCCCCE----EEECcHHHHHHHHHHHh-cCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCCC
Confidence 34466778888888776533 45555789999999998 799999999998888776554 4667889999998643
Q ss_pred CccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCC
Q 010538 162 EAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK 241 (508)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~ 241 (508)
. .+.++ +++ .++|++|++++++||++.+.|+++|.++||+
T Consensus 138 ~--------------------~e~l~--~al------~~~TklV~lesPsNP~l~v~dl~~I~~la~~------------ 177 (395)
T PRK05967 138 I--------------------GAGIA--KLM------RPNTKVVHTEAPGSNTFEMQDIPAIAEAAHR------------ 177 (395)
T ss_pred C--------------------HHHHH--Hhc------CcCceEEEEECCCCCCCcHHHHHHHHHHHHH------------
Confidence 1 34456 444 5679999999999999999999999999998
Q ss_pred CCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhc
Q 010538 242 GRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRR 319 (508)
Q Consensus 242 ~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~ 319 (508)
+|+++++|++++.+.. ....++|+|+++.|.+|+++|-.+ .|+++.+++..+++....
T Consensus 178 ~g~~vvVD~t~a~p~~-~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~~------------------- 237 (395)
T PRK05967 178 HGAIVMMDNTWATPLY-FRPLDFGVDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEAH------------------- 237 (395)
T ss_pred hCCEEEEECCccCcee-cChhHcCCCEEEEecccccCCCCCeeEEEEEcCHHHHHHHHHHH-------------------
Confidence 9999999999976521 233346899999999998883322 576666665544433110
Q ss_pred cCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceE-EEecCCCCCccc-----
Q 010538 320 QGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVC-TIYGTYTSEVSY----- 393 (508)
Q Consensus 320 ~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~-~~~~~~~~~~~~----- 393 (508)
.....+.+....+.+...++. +..+.++..+.+..+.+.|++.+ .+ +++-|.-. ..+
T Consensus 238 -----~~~G~~~~p~da~l~~rgl~T-----l~lR~~~~~~na~~lA~~L~~hp------~v~~V~yPgl~-s~p~~~~~ 300 (395)
T PRK05967 238 -----GTLGLCAGPDDTYQILRGLRT-----MGIRLEHHRKSALEIARWLEGRP------DVARVLHPALP-SFPGHEIW 300 (395)
T ss_pred -----HHcCCCCCHHHHHHHHcCccc-----HHHHHHHHHHHHHHHHHHHHhCC------CCcEEECCCCC-CCccHHHH
Confidence 111223333333333333333 45555666777777777777763 34 33333210 000
Q ss_pred ----CCCCceEEEEeeCCC--CCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCcccc
Q 010538 394 ----HDTGSMVSFNLKRPD--GSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDII 467 (508)
Q Consensus 394 ----~~~~~~v~~~~~~~~--~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 467 (508)
..-+++++|.+++.. +.+ ...++...|+-..+.++-|...+.- .+ ....+..+.+ .
T Consensus 301 ~~~~~g~gg~~sf~l~~~~~~~~~-~~~~f~~~l~l~~~~~slG~~~sLi-~~--~~~~~~~~~~-~------------- 362 (395)
T PRK05967 301 KRDFSGASGIFSFVLAAGPEKGKA-KAHAFLDALEIFGLGYSWGGYESLA-LH--VKLGDRTVAK-A------------- 362 (395)
T ss_pred HHhCCCCceEEEEEEcCCCcccHH-HHHHHHHhCCcceEccCCCCcceee-ee--CCCChhHhhh-c-------------
Confidence 012689999997420 111 1123444444334444444322111 00 0011111111 1
Q ss_pred CCCCCceEEEecCCCCCHHHHHHHHHhhh
Q 010538 468 HGKPTGAIRVSFGYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 468 ~~~~~~~iRis~~~~~t~eev~~l~~~~~ 496 (508)
+..++.||+|++.-+.++=++.+.++|.
T Consensus 363 -~~~~~liRlSvGlEd~~dLi~Dl~~Al~ 390 (395)
T PRK05967 363 -PYAGPVIRLQIGLEDVPDLKADLERGFA 390 (395)
T ss_pred -cCCCCeEEEEeccCCHHHHHHHHHHHHH
Confidence 1235789999998766665665555554
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.3e-17 Score=167.77 Aligned_cols=328 Identities=12% Similarity=0.073 Sum_probs=205.9
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+ .+..+|.+.+++.+.+. .. ......+ ......++.+.+++++|.+ ++++++|+
T Consensus 25 ~g~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~-~~-~~~~~~~-----~~~~~~~l~~~la~~~g~~----~~~~~~sg 93 (379)
T TIGR00707 25 NGKEYLDFVAGIAVNSLGHAHPKLVEALKEQLE-KL-VHVSNLY-----YTEPQEELAEKLVEHSGAD----RVFFCNSG 93 (379)
T ss_pred CCCEEEEcCcchhhccCCCCCHHHHHHHHHHHh-hc-ccccccc-----CCHHHHHHHHHHHhhCCCC----EEEEeCCc
Confidence 5566777754 33445778777765443 21 1111111 2345778899999999864 68999999
Q ss_pred HHHHHHHHhhcC--CC----CCCeEEEecccccchHHHHHHHHhcCCeEE----EEccCCccCccccccccccccccccc
Q 010538 113 TAALKLVGEAFP--WS----HQSSYMYTMENHNSVLGIREYALSQGAAAF----AIDVEEAVDNDGLSESLVTSTKISLL 182 (508)
Q Consensus 113 t~al~~~~~~l~--~~----~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~----~v~~~~~~~~~~l~~~~~~~~~~~~d 182 (508)
++|+.+++..+. .. ++++|++....|..+....... +.... ..+...+..... -.|
T Consensus 94 ~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----------~~d 159 (379)
T TIGR00707 94 AEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSA---TGQPKYQKGFEPLVPGFSYAP-----------YND 159 (379)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHh---cCChhhhccCCCCCCCceeeC-----------CCC
Confidence 999998887552 11 3688888775554443332222 21111 112211110000 004
Q ss_pred hhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccc-cC---HHHHHHHHcCCccccccCCCCCCCeEEEEecccc-CCCC
Q 010538 183 PIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSR-FN---LDLINIMKKNPERILEISPFSKGRWMVLIDAAKG-CVTQ 257 (508)
Q Consensus 183 ~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~-~~---i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~-~g~~ 257 (508)
++.++ +.+ ++++++|+++++++++|.. .+ +++|.++|++ +|+++++|++++ ++..
T Consensus 160 ~~~l~--~~~------~~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~------------~~~~~i~De~~~~~~~~ 219 (379)
T TIGR00707 160 IESLK--KAI------DDETAAVIVEPIQGEGGVNPASAEFLKALREICKD------------KDALLIFDEVQTGIGRT 219 (379)
T ss_pred HHHHH--HHh------hhCeeEEEEEccccCCCCccCCHHHHHHHHHHHHH------------cCCEEEEeccccCCCcc
Confidence 67777 444 3568999999888888865 44 5566666665 999999999987 4332
Q ss_pred ----CCCCCCCCCcEEEEeccccccCCC-cceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCC
Q 010538 258 ----PPDLSKYPVDFVVMSFYKIFGYPT-GLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTAS 332 (508)
Q Consensus 258 ----~~d~~~~~~D~~~~S~~K~~g~P~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~ 332 (508)
+.+......|++ +++|.++ |+ .+|+++++++.++.+.+...+ . ..+.+
T Consensus 220 g~~~~~~~~~~~~d~~--t~sK~~~-~G~riG~~~~~~~~~~~~~~~~~~-----------------------~-~~~~~ 272 (379)
T TIGR00707 220 GKFFAYEHYGIEPDII--TLAKGLG-GGVPIGATLAKEEVAEAFTPGDHG-----------------------S-TFGGN 272 (379)
T ss_pred chhhhHHhcCCCCCEE--EEccccc-CCcccEEEEEcHHHHhhhcCCCCC-----------------------C-CCCCC
Confidence 112222345665 5679998 52 389999998887766543111 0 11235
Q ss_pred hhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCcc
Q 010538 333 FLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWF 412 (508)
Q Consensus 333 ~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 412 (508)
...++++.++++.+.. ..+.++++++++++++.|+++. ........ ...+.++++.++..
T Consensus 273 ~~~~~aa~aaL~~~~~---~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~-----~~~g~~~~~~~~~~----- 332 (379)
T TIGR00707 273 PLACAAALAVLEVIEK---ERLLENVKEKGDYFKERLEELG-------KNYPNKEV-----RGKGLMLGIELEAP----- 332 (379)
T ss_pred HHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHH-------hhCCCCcc-----ccCceEEEEEecCc-----
Confidence 5667777778887653 3567888889999998887652 11110110 01267888887542
Q ss_pred CHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHH
Q 010538 413 GYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNR 492 (508)
Q Consensus 413 ~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~ 492 (508)
...+.+.|.++||.++++. .+++|++++..+|.+++++++
T Consensus 333 -~~~~~~~l~~~Gv~v~~~~---------------------------------------~~~lRi~~~~~~t~~~i~~~~ 372 (379)
T TIGR00707 333 -CKDIVKKALEKGLLVNCAG---------------------------------------PKVLRFLPPLIITKEEIDEAV 372 (379)
T ss_pred -HHHHHHHHHHCCcEEeeCC---------------------------------------CCEEEEECCCcCCHHHHHHHH
Confidence 2357888999999998631 368999999999999999999
Q ss_pred Hhhhhh
Q 010538 493 CSSFDF 498 (508)
Q Consensus 493 ~~~~~~ 498 (508)
++|++.
T Consensus 373 ~~l~~~ 378 (379)
T TIGR00707 373 SALEEA 378 (379)
T ss_pred HHHHHh
Confidence 998764
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-17 Score=171.98 Aligned_cols=232 Identities=13% Similarity=0.040 Sum_probs=158.3
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhc-CCeEEEEccC
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQ-GAAAFAIDVE 161 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~-G~~v~~v~~~ 161 (508)
....+++++++|++.+.+ .++.++|+++|+.+++.. +++|++||++...|.....+....... +.++...
T Consensus 53 ~p~~~~le~~lA~leg~~----~~v~~~sG~aAi~~~l~~--l~~GD~VI~~~~~yg~~~~~~~~~~~~~~~~~~~~--- 123 (364)
T PRK07269 53 NPTRAKLEETLAAIESAD----YALATSSGMSAIVLAFSV--FPVGSKVVAVRDLYGGSFRWFNQQEKEGRFHFTYA--- 123 (364)
T ss_pred CccHHHHHHHHHHHhCCC----eEEEeCCHHHHHHHHHHH--hCCCCEEEEecCCcCchHHHHHHHHhcCcEEEEec---
Confidence 344677899999999864 578899999999988854 478999999987776655554433222 2222211
Q ss_pred CccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCC
Q 010538 162 EAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK 241 (508)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~ 241 (508)
. |+++++ +++ +++|++|++++++||+|.+.|+++|.++|++
T Consensus 124 ----~---------------d~~~l~--~~i------~~~TklV~lesP~NPtg~~~di~~I~~la~~------------ 164 (364)
T PRK07269 124 ----N---------------TEEELI--AAI------EEDTDIVYIETPTNPLMVEFDIEKVAKLAHA------------ 164 (364)
T ss_pred ----C---------------CHHHHH--Hhc------CcCceEEEEECCCCCCCeeeCHHHHHHHHHH------------
Confidence 1 466777 444 5789999999999999999999999999998
Q ss_pred CCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEec-hhHhhhccccccCceEEecccchhhhhh
Q 010538 242 GRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRN-DAAKLLKNTYFSGGTVAASIADIDFVKR 318 (508)
Q Consensus 242 ~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~ 318 (508)
+|+++++|.+++.+...-+ ...++|+++.|++|+++++.. .|+++.++ ++.++++...
T Consensus 165 ~gi~vvvD~t~~~~~~~~p-l~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~------------------ 225 (364)
T PRK07269 165 KGAKVIVDNTFYSPIYQRP-IELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNL------------------ 225 (364)
T ss_pred cCCEEEEECCCcccccCCc-hhhCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHH------------------
Confidence 8999999999766543222 245899999999999986654 47667654 4444333110
Q ss_pred ccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceE-EEecCCCCCcccCCCC
Q 010538 319 RQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVC-TIYGTYTSEVSYHDTG 397 (508)
Q Consensus 319 ~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~-~~~~~~~~~~~~~~~~ 397 (508)
.......+....+-+...++ .++.+.++..+++.++.+.|++.+ .+ +++-|.. +
T Consensus 226 ------~~~G~~~s~~~a~l~~~~L~-----tL~~r~~~~~~na~~~a~~L~~~p------~v~~v~ypg~--------g 280 (364)
T PRK07269 226 ------NTTGAVLSPFDSYLLMRGLK-----TLSLRMERSTANAQEVVAFLKKSP------AVKEVLYTGK--------G 280 (364)
T ss_pred ------HHhCCCCCHHHHHHHHcCCC-----cHHHHHHHHHHHHHHHHHHHHhCC------CccEEeCCCc--------C
Confidence 00111222222222222222 357777888899999999998763 45 3443432 8
Q ss_pred ceEEEEeeC
Q 010538 398 SMVSFNLKR 406 (508)
Q Consensus 398 ~~v~~~~~~ 406 (508)
++++|.+.+
T Consensus 281 g~~sf~~~~ 289 (364)
T PRK07269 281 GMISFKVAD 289 (364)
T ss_pred cEEEEEECC
Confidence 999999853
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-17 Score=173.42 Aligned_cols=161 Identities=11% Similarity=0.059 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHH-HHHHHhcCCeEEEEccCC
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGI-REYALSQGAAAFAIDVEE 162 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~-~~~~~~~G~~v~~v~~~~ 162 (508)
...+++++.+|++.|.+ ..++++|++.|+..++.++ .++|++|+++...|++.... ...++..|++++.++.+
T Consensus 57 p~~~~le~~lA~l~g~~----~~v~~~sG~~Ai~~al~~l-~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~~- 130 (418)
T TIGR01326 57 PTTDVLEQRIAALEGGV----AALAVASGQAAITYAILNL-AQAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDPD- 130 (418)
T ss_pred hhHHHHHHHHHHHhCCC----eEEEEccHHHHHHHHHHHH-hCCCCEEEEECCCcHHHHHHHHHHHHHcCcEEEEECCC-
Confidence 34678899999999974 4688899999999999887 67899999998887765443 44567789999998753
Q ss_pred ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC
Q 010538 163 AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG 242 (508)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~ 242 (508)
|+++++ +++ .+++++|++++++||+|.+.|+++|.++|++ +
T Consensus 131 -------------------d~~~l~--~~l------~~~t~~V~le~p~NPtg~v~dl~~I~~la~~------------~ 171 (418)
T TIGR01326 131 -------------------DPEEFE--KAI------DENTKAVFAETIGNPAINVPDIEAIAEVAHA------------H 171 (418)
T ss_pred -------------------CHHHHH--Hhc------CcCCeEEEEECCCCCCCeecCHHHHHHHHHH------------c
Confidence 256677 554 4578999999999999999999999999998 8
Q ss_pred CeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEech
Q 010538 243 RWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRND 291 (508)
Q Consensus 243 g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~ 291 (508)
|+++++|++++.+.....+ ..++|+++.|++|+++ +.| +|+++++++
T Consensus 172 ~i~livD~t~~~~~~~~~l-~~g~Divv~S~sK~l~-g~G~~lGg~v~~~~ 220 (418)
T TIGR01326 172 GVPLIVDNTFATPYLCRPI-DHGADIVVHSATKYIG-GHGTAIGGVIVDGG 220 (418)
T ss_pred CCEEEEECCCchhhcCCch-hcCCeEEEECcccccc-CCccceEEEEEecc
Confidence 9999999999876432222 4579999999999999 445 888888653
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-17 Score=173.92 Aligned_cols=224 Identities=12% Similarity=0.019 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHH-HHHHhcCCeEEEEccCCcc
Q 010538 86 VRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIR-EYALSQGAAAFAIDVEEAV 164 (508)
Q Consensus 86 ~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~-~~~~~~G~~v~~v~~~~~~ 164 (508)
...+++.+|++.|.+ ++++++|++.|+.+++.++ .++|+.|+++...|+.+.... ..++..|++++.++.. .
T Consensus 85 ~~~Le~~lA~leg~~----~~iv~~sG~~Ai~~~l~al-~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~~v~~~~~--~ 157 (427)
T PRK07049 85 SEIVEDRLAVYEGAE----SAALFSSGMSAIATTLLAF-VRPGDVILHSQPLYGGTETLLAKTFRNFGVGAVGFADG--L 157 (427)
T ss_pred HHHHHHHHHHHhCCC----cEEEEccHHHHHHHHHHHH-hCCCCEEEEcCCCcccHHHHHHHHHHhcCcEEEEEeCC--C
Confidence 567889999999865 3677778888999999888 688999999988888776653 3456679987666522 1
Q ss_pred CccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCC-CC
Q 010538 165 DNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK-GR 243 (508)
Q Consensus 165 ~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~-~g 243 (508)
|.++++ +++.+ ....++|++|++++++||||.++|+++|.++++.+ -+++ ++
T Consensus 158 -----------------d~~~l~--~~l~~-~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~-------~~~~~~~ 210 (427)
T PRK07049 158 -----------------SEAAIG--AAAEA-AAAKGRVSLILIETPANPTNSLVDVAAVRRVADAI-------EARQGHR 210 (427)
T ss_pred -----------------CHHHHH--HHHHh-hccCCCceEEEEECCCCCCCcccCHHHHHHHHHHh-------hhcccCC
Confidence 123333 22211 11135789999999999999999999999999840 0111 68
Q ss_pred eEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccC
Q 010538 244 WMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQG 321 (508)
Q Consensus 244 ~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~ 321 (508)
+++++|.++........+ ..++|+++.|++|.+++..| +|+++.++++++.+.....
T Consensus 211 ~~vvvDety~~~~~~~pl-~~g~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~~~~-------------------- 269 (427)
T PRK07049 211 PIIACDNTLLGPVFQKPL-EHGADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRALRS-------------------- 269 (427)
T ss_pred CEEEEECCccccccCCcc-ccCCCEEEEcCceeecCCCCcEEEEEECCHHHHHHHHHHHH--------------------
Confidence 999999996543321222 34689999999999986556 7998888877665543211
Q ss_pred ccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhccc
Q 010538 322 VEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLR 373 (508)
Q Consensus 322 ~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~ 373 (508)
...++.+....+.+..+++. +..+.++..+.++.+.+.|++.+
T Consensus 270 ----~~g~~ls~~~a~l~~r~L~t-----l~~R~~~~~~~a~~la~~L~~~p 312 (427)
T PRK07049 270 ----AIGTQLDPHSCWMLGRSLET-----LVLRMERANRNARAVAEFLRDHP 312 (427)
T ss_pred ----hcCCCCCHHHHHHHHcCCCh-----HHHHHHHHHHHHHHHHHHHHhCC
Confidence 11223343434444334432 45555666888889999998874
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-17 Score=174.26 Aligned_cols=249 Identities=12% Similarity=0.021 Sum_probs=166.8
Q ss_pred HHHHHHHHHHc----C--CCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEcc
Q 010538 87 RAAREQVLDYF----N--ASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDV 160 (508)
Q Consensus 87 ~~~r~~la~~~----~--~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~ 160 (508)
..+|+.+|+++ | ++++ +|++|+|+++++.+++.++...+|+.|+++...|+.+..... ..|.+++.+|+
T Consensus 110 ~~LR~aia~~~~~~~g~~~~~~--~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~~~~~---~~g~~~v~v~~ 184 (407)
T PLN02368 110 PGVRKEVAEFIERRDGYPSDPE--LIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYSATIS---LLGGTLVPYYL 184 (407)
T ss_pred HHHHHHHHHHHHHhcCCCCChh--hEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccHHHHHH---HcCCEEEEEec
Confidence 34555555554 6 5677 899999999999999998843689999999977777765544 45899999998
Q ss_pred CCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCC
Q 010538 161 EEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFS 240 (508)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~ 240 (508)
+.+... .+|+++++ +++.+......+|+++++++++||||.+++.+++.++++ +|+
T Consensus 185 ~~~~~~-------------~~d~~~le--~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~---------~a~ 240 (407)
T PLN02368 185 EESENW-------------GLDVNNLR--QSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILK---------FCY 240 (407)
T ss_pred ccccCC-------------CCCHHHHH--HHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHH---------HHH
Confidence 653211 12678887 555321111237899999999999999999998888877 566
Q ss_pred CCCeEEEEeccccC----CCCC-CCCC----C-------CCCcEEEEeccccc-cCCCc--ceEEEE---echhHhhhcc
Q 010538 241 KGRWMVLIDAAKGC----VTQP-PDLS----K-------YPVDFVVMSFYKIF-GYPTG--LGALIM---RNDAAKLLKN 298 (508)
Q Consensus 241 ~~g~~vivD~a~~~----g~~~-~d~~----~-------~~~D~~~~S~~K~~-g~P~G--~G~l~~---~~~~~~~l~~ 298 (508)
++|++||+|.++.. +..+ .++. . .+.-+++.|++|.| + .+| +||+++ ++++++.+..
T Consensus 241 ~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~-~~GlRiGy~i~~~~~~~li~~~~~ 319 (407)
T PLN02368 241 QERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWG-ECGQRGGYFEMTNIPPKTVEEIYK 319 (407)
T ss_pred HcCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCccccc-CCccceEEEEEeCCCHHHHHHHHH
Confidence 79999999999864 2111 2211 1 11347788999987 6 557 899995 6677665544
Q ss_pred ccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH-------h--cChHHHHHHHHHHHHHHHHHH
Q 010538 299 TYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN-------S--LTVPAICRHIASLGMYVRKVL 369 (508)
Q Consensus 299 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~-------~--~g~~~i~~~~~~l~~~l~~~L 369 (508)
.. ... .+.+.....++.++++--. . ..++++.+.+++.++++.+.|
T Consensus 320 ~~------------------------~~~-~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L 374 (407)
T PLN02368 320 VA------------------------SIA-LSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGF 374 (407)
T ss_pred Hh------------------------ccc-CCCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 31 011 1234444455554553100 0 012456788889999999999
Q ss_pred hcccCCCCCceEEEecCCCCCcccCCCCceEEEEe
Q 010538 370 LSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNL 404 (508)
Q Consensus 370 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 404 (508)
+++ +|+.+..|.+ +.+++.++
T Consensus 375 ~~~------~g~~~~~P~G--------afy~~~~i 395 (407)
T PLN02368 375 NSC------KNVVCNFTEG--------AMYSFPQI 395 (407)
T ss_pred hCC------CCeEeCCCCe--------eeEeccCC
Confidence 988 4787766554 55666544
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-16 Score=165.90 Aligned_cols=335 Identities=13% Similarity=0.085 Sum_probs=202.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA 163 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~ 163 (508)
...++..+.+++++|.+ ++++++|+|.|+.+++.++..++|++|+++...|+++...+ ...|++++.++++.+
T Consensus 31 ~~~~~~e~~la~~~g~~----~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~---~~~G~~~v~~d~d~~ 103 (375)
T PRK11706 31 GFTRRCQQWLEQRFGSA----KVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAF---VLRGAKIVFVDIRPD 103 (375)
T ss_pred HHHHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHH---HHcCCEEEEEecCCC
Confidence 34677788899998884 68999999999999887776788999999998888775544 456999999998764
Q ss_pred c-CccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC
Q 010538 164 V-DNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG 242 (508)
Q Consensus 164 ~-~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~ 242 (508)
. .+ |+++++ +++ +++|++|+++| ++|...++++|.++|++ +
T Consensus 104 ~~~~---------------d~~~le--~~i------~~~tk~i~~~~---~~G~~~~~~~i~~la~~------------~ 145 (375)
T PRK11706 104 TMNI---------------DETLIE--AAI------TPKTRAIVPVH---YAGVACEMDTIMALAKK------------H 145 (375)
T ss_pred cCCc---------------CHHHHH--Hhc------CCCCeEEEEeC---CCCCccCHHHHHHHHHH------------c
Confidence 3 34 688888 554 45789888764 58999999999999998 9
Q ss_pred CeEEEEeccccCCCCCCCCCCC--CCcEEEEecc--ccccCCCcceEEEEe-chhHhhhccccccCceEEecccchhhhh
Q 010538 243 RWMVLIDAAKGCVTQPPDLSKY--PVDFVVMSFY--KIFGYPTGLGALIMR-NDAAKLLKNTYFSGGTVAASIADIDFVK 317 (508)
Q Consensus 243 g~~vivD~a~~~g~~~~d~~~~--~~D~~~~S~~--K~~g~P~G~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~ 317 (508)
|++||+|++|++|.. .+-... ..|+-++|+| |.++ ++.-|+++++ +++.++++.....|..... .+..
T Consensus 146 ~i~vIeD~a~a~g~~-~~~~~~g~~~~~~~~Sf~~~K~l~-~g~gG~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~ 218 (375)
T PRK11706 146 NLFVVEDAAQGVMST-YKGRALGTIGHIGCFSFHETKNYT-AGEGGALLINDPALIERAEIIREKGTNRSQ-----FFRG 218 (375)
T ss_pred CCEEEEECccccccc-cCCeeeecCcCEEEEeCCCCcccc-ccCCeEEEECCHHHHHHHHHHHHcCCCcch-----hhcc
Confidence 999999999998863 222211 2478888988 9887 6322545554 4565555444322211000 0000
Q ss_pred hccCccccccCCCCCh-hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEec-CCCCCcccCC
Q 010538 318 RRQGVEELFEDGTASF-LSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYG-TYTSEVSYHD 395 (508)
Q Consensus 318 ~~~~~~~~~~~gt~~~-~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~-~~~~~~~~~~ 395 (508)
.... ......|+... ..+.+ ...+..+.. ++.+.++-+++.+++.+.|.+++. .+.+++.. +... ..
T Consensus 219 ~~~~-~~~~~~g~~~~~~~~~a-a~~~~ql~~--l~~~~~~R~~~~~~~~~~L~~~~~---~~~~~~~~~~~~~----~~ 287 (375)
T PRK11706 219 QVDK-YTWVDIGSSYLPSELQA-AYLWAQLEA--ADRINQRRLALWQRYYDALAPLAE---AGRIELPSIPDDC----KH 287 (375)
T ss_pred CCCc-ceeeecccccCcCHHHH-HHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCCc---CCeeecCCCCCCC----ce
Confidence 0000 00011222211 11111 111122222 566777777888888888877621 00233321 1111 01
Q ss_pred CCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCC-ccCCCccccCCCCCce
Q 010538 396 TGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGH-VCWDDNDIIHGKPTGA 474 (508)
Q Consensus 396 ~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~ 474 (508)
..+++++.+++. .+..++.+.|.++||.++....+... ++. ....+..+ .|-.. .......
T Consensus 288 ~~~~~~~~~~~~----~~r~~l~~~L~~~gI~~~~~~~p~~~--~~~--------~~~~~~~~~~~p~a----~~~~~~~ 349 (375)
T PRK11706 288 NAHMFYIKLRDL----EDRSALINFLKEAGIMAVFHYIPLHS--SPA--------GERFGRFHGEDRYT----TKESERL 349 (375)
T ss_pred eeEEEEEEECCc----CCHHHHHHHHHHCCCCccccCCccCc--chh--------hHhcCCCCCCChHH----HHHHhCc
Confidence 134555666432 23456899999999998754321110 000 00000000 00000 0113567
Q ss_pred EEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 475 IRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 475 iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
+-+-++..-|.+|++++++.+++++
T Consensus 350 l~lP~~~~l~~~~~~~i~~~i~~~~ 374 (375)
T PRK11706 350 LRLPLFYNLTDVEQRTVIDTILEFF 374 (375)
T ss_pred EeccCCCCCCHHHHHHHHHHHHHHh
Confidence 8888998899999999999998764
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.5e-18 Score=167.34 Aligned_cols=313 Identities=15% Similarity=0.142 Sum_probs=214.1
Q ss_pred HHHHHHHHHHHHcC--------CCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEE
Q 010538 85 IVRAAREQVLDYFN--------ASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAF 156 (508)
Q Consensus 85 ~~~~~r~~la~~~~--------~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~ 156 (508)
.....|+++|+++. .+|+ .+++++|+|.|++++.-.| ..||+..+++..-||++..-++ -+.|++++
T Consensus 122 Gl~~frqa~A~Fm~~~r~~~v~fdP~--~~Vv~~G~T~ane~l~fcL-adpgdafLvPtPyY~gfdrdl~--~rTgveiv 196 (471)
T KOG0256|consen 122 GLPSFRQAVAEFMERARGNRVKFDPE--RVVVTNGATSANETLMFCL-ADPGDAFLVPTPYYPGFDRDLR--WRTGVEIV 196 (471)
T ss_pred CchHHHHHHHHHHHHHhCCCCccCcc--ceEEecccchhhHHHHHHh-cCCCceeeecCCCCCcccccce--eccCceEE
Confidence 34567777777754 4788 8999999999999999998 6899999999988887754333 24689998
Q ss_pred EEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCcccccc
Q 010538 157 AIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEI 236 (508)
Q Consensus 157 ~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~ 236 (508)
.|........ +.+++++| +++++....+.+++-|.+++++||.|++++.+++..++.
T Consensus 197 pv~c~Ss~~f-------------~itv~alE--~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~-------- 253 (471)
T KOG0256|consen 197 PVHCSSSNGF-------------QITVEALE--AALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLN-------- 253 (471)
T ss_pred EEEeecCCCc-------------cccHHHHH--HHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHH--------
Confidence 8887653322 22688888 777655556778999999999999999999999999988
Q ss_pred CCCCCCCeEEEEeccccCCC---CC-CCC------C--CCCCcEEEEeccccccCCCc--ceEEEEechhHhhhcccccc
Q 010538 237 SPFSKGRWMVLIDAAKGCVT---QP-PDL------S--KYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFS 302 (508)
Q Consensus 237 ~~~~~~g~~vivD~a~~~g~---~~-~d~------~--~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g 302 (508)
.+.++++.+|+|+.++.-. .. .++ . ..+.--++.|.+|=||-| | .|++|..++-.-......
T Consensus 254 -Fa~~kniHvI~DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~Glp-GfRvGviYS~ne~VvsaA~km-- 329 (471)
T KOG0256|consen 254 -FASRKNIHVISDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLP-GFRVGVIYSNNEDVVSAATKM-- 329 (471)
T ss_pred -HHhhcceEEEeehhhcccccCccCceEHHHHhhccccCCCcEEEEEEeccccCCC-ceEEEEEEecChHHHHHHHHH--
Confidence 6777999999999986421 10 011 0 112235788999999945 7 899998776542221111
Q ss_pred CceEEecccchhhhhhccCccccccCCCCChh-HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceE
Q 010538 303 GGTVAASIADIDFVKRRQGVEELFEDGTASFL-SIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVC 381 (508)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~-~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~ 381 (508)
.+|..-+.-+- .++.+- +=+++.+..+.+..+|++...+++.++|+++ |+
T Consensus 330 ---------------------ssf~~vSs~tQ~~la~LL-SD~~f~~~yl~en~~Rl~~rh~~~~~gLk~l-------gI 380 (471)
T KOG0256|consen 330 ---------------------SSFGLVSSQTQYLLASLL-SDEEFTREYLRENNKRLRIRHRYIVEGLKAL-------GI 380 (471)
T ss_pred ---------------------hhccCCcHHHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHHHHhhHHhc-------CC
Confidence 00100000011 122222 2244555567888999999999999999998 78
Q ss_pred EEecCCCCCcccCCCCceEEEEeeCC-CCCcc-CHHHHHHH-HhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCC
Q 010538 382 TIYGTYTSEVSYHDTGSMVSFNLKRP-DGSWF-GYREVEKL-ASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGH 458 (508)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~-~~~~l~~~-L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~ 458 (508)
..+.... +-++|+++... +...+ ....+.+. +.+-++.+++|.+|.
T Consensus 381 ~cl~s~A--------GlF~wvDlr~lL~s~tfe~El~Lw~~i~~~vklnlSpG~s~~----------------------- 429 (471)
T KOG0256|consen 381 PCLKSNA--------GLFCWVDLRKLLTSLTFEGELELWERILDNVKLNLSPGSSCH----------------------- 429 (471)
T ss_pred ceeecCC--------eeEEEEEhHHhcCcCChHHHHHHHHHHHHhhccccCCCCcce-----------------------
Confidence 8876654 77888887642 11111 12234444 444599999998763
Q ss_pred ccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 459 VCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 459 ~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
|. .+||+|++|... .++.++-.++.+++++.
T Consensus 430 -C~---------EpGWFRvcFAn~-~~~t~~~am~Ri~~~~~ 460 (471)
T KOG0256|consen 430 -CH---------EPGWFRVCFANM-SEETLEVAMRRLKQFLD 460 (471)
T ss_pred -ec---------CCCeEEEEeccC-CHHHHHHHHHHHHHHHH
Confidence 22 279999999842 33444447888888875
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-17 Score=173.35 Aligned_cols=308 Identities=13% Similarity=0.028 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHcC-----CCCCC-ceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEc
Q 010538 86 VRAAREQVLDYFN-----ASMKD-YKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAID 159 (508)
Q Consensus 86 ~~~~r~~la~~~~-----~~~~~-~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~ 159 (508)
...+|+.+++++. ..++. .+|++|+|+++++.+++.++ ..+|+.|++....|+.+..... ...|.+++.+|
T Consensus 46 ~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~--~~~g~~vv~v~ 122 (388)
T PRK08637 46 IPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLF-VDQGDTVLLPDHNWGNYKLTFN--TRRGAEIVTYP 122 (388)
T ss_pred CHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHh-cCCCCEEEEcCCCCccHHHHHH--HhcCCEEEEec
Confidence 4555666666542 33210 16899999999999999998 5789999988877776654322 23589999999
Q ss_pred cC-CccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCC
Q 010538 160 VE-EAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISP 238 (508)
Q Consensus 160 ~~-~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~ 238 (508)
+. ++..+ |+++++ +.++. ...+.++++++++++||||.+++.+++.++++ +
T Consensus 123 ~~~~~~~~---------------d~~~l~--~~~~~--~~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~---------~ 174 (388)
T PRK08637 123 IFDEDGGF---------------DTDALK--EALQA--AYNKGKVIVILNFPNNPTGYTPTEKEATAIVE---------A 174 (388)
T ss_pred ccCCCCcC---------------CHHHHH--HHHHh--hccCCCEEEEEeCCCCCCCCCCCHHHHHHHHH---------H
Confidence 83 33334 577777 55431 11245577888999999999999888887766 2
Q ss_pred CC-----CCCeEEEEeccccC----CCCCCCC-C---CC--CCc-EEEEeccccccCCCc--ceEEEEe------chhHh
Q 010538 239 FS-----KGRWMVLIDAAKGC----VTQPPDL-S---KY--PVD-FVVMSFYKIFGYPTG--LGALIMR------NDAAK 294 (508)
Q Consensus 239 ~~-----~~g~~vivD~a~~~----g~~~~d~-~---~~--~~D-~~~~S~~K~~g~P~G--~G~l~~~------~~~~~ 294 (508)
|+ +++++||+|.++.. +....++ . .. ++- +.+.|++|.++.| | +||+++. +++.+
T Consensus 175 ~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~p-GlRlG~~~~~~~~~~~~~l~~ 253 (388)
T PRK08637 175 IKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVW-GFRVGFITFGTKAGSSQTVKE 253 (388)
T ss_pred HHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCc-ccceEEEEEccccCCcHHHHH
Confidence 32 28999999998752 2111121 1 11 221 2345999987745 6 8999975 34544
Q ss_pred hhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHHHhccc
Q 010538 295 LLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN-SLTVPAICRHIASLGMYVRKVLLSLR 373 (508)
Q Consensus 295 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~-~~g~~~i~~~~~~l~~~l~~~L~~l~ 373 (508)
.+...... ..+......+.....++..+++.-. ...+....+.+++..+.+.+.|++..
T Consensus 254 ~~~~~~~~--------------------~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~ 313 (388)
T PRK08637 254 ALEKKVKG--------------------LIRSNISNGPHPSQSAVLRALNSPEFDKEKQEKFQILKERYEKTKEVLYDGK 313 (388)
T ss_pred HHHHHHHH--------------------HhhcccCCCCcHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 44321100 0000111223333344443432100 00123333445555566666665431
Q ss_pred CCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHH-hhCCCeeccCCCCCchHHHhhcCCChhhhhh
Q 010538 374 HENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLA-SLSGIQLRTGCFCNPGACAKYLGLSHSDLLS 452 (508)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L-~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~ 452 (508)
..+++.+..+.+ +.++|+++++. +..++.+.| +++||.+...
T Consensus 314 ---~~~~~~~~~~~~--------g~~~~~~l~~~-----~~~~l~~~l~~~~gv~~~~~--------------------- 356 (388)
T PRK08637 314 ---YDDAWQAYPFNS--------GYFMCLKLKGV-----DAEELRVHLLEKYGIGTIAL--------------------- 356 (388)
T ss_pred ---CCCCcccccccc--------eEEEEecCChH-----HHHHHHHHHhhhcceEEEec---------------------
Confidence 012455554433 67888888632 233466666 5789987531
Q ss_pred hhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 453 NIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
..+++|++++. .+.++++..++.|.++++-
T Consensus 357 ------------------~~~~iRi~~~~-~~~~~i~~~~~~l~~~~~~ 386 (388)
T PRK08637 357 ------------------NETDLRIAFSC-VEEEDIPELFDSIYKAIKD 386 (388)
T ss_pred ------------------cCCceEEEeec-CCHHHHHHHHHHHHHHHHh
Confidence 14679999986 6789999999998887763
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=3e-17 Score=169.44 Aligned_cols=241 Identities=16% Similarity=0.070 Sum_probs=161.0
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHH-HHHHhcCCeEEEEcc
Q 010538 82 TCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIR-EYALSQGAAAFAIDV 160 (508)
Q Consensus 82 ~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~-~~~~~~G~~v~~v~~ 160 (508)
.....+++.+.++++.|.+. .+.+++++.|+.+++.++ +++||+||++...|.....+. ..+...|++++.++.
T Consensus 62 ~~P~~~~lE~~la~leg~~~----av~~sSG~aAi~~al~al-l~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd~ 136 (384)
T PRK06434 62 GNPTVQAFEEKYAVLENAEH----ALSFSSGMGAITSAILSL-IKKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDT 136 (384)
T ss_pred CChhHHHHHHHHHHHhCCCc----EEEeCCHHHHHHHHHHHH-hCCCCEEEEecCccchHHHHHHHHHHhcCcEEEEECC
Confidence 34556778899999999864 356667778999999998 788999999887776666554 566778999999988
Q ss_pred CCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCC
Q 010538 161 EEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFS 240 (508)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~ 240 (508)
+....++ +. .+++++|++.++.||++.+.|+++|.++||+
T Consensus 137 ~~~~~~~------------------l~-----------~~~tklv~~e~~snpt~~v~Di~~I~~la~~----------- 176 (384)
T PRK06434 137 DRLNSLD------------------FD-----------PSNYDLIYAESITNPTLKVPDIKNVSSFCHE----------- 176 (384)
T ss_pred CChhhee------------------ec-----------CCCeeEEEEEcCCCCCceeecHHHHHHHHHH-----------
Confidence 6422220 11 2368999999999999999999999999997
Q ss_pred CCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEech-hHhhhccccccCceEEecccchhhhh
Q 010538 241 KGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRND-AAKLLKNTYFSGGTVAASIADIDFVK 317 (508)
Q Consensus 241 ~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~ 317 (508)
++ ++||++++.+...-.+ ..++|++++|.||+++++.+ -|+++.+++ ..++++....
T Consensus 177 -~~--lvVD~t~~s~~~~~pl-~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~---------------- 236 (384)
T PRK06434 177 -ND--VIVDATFASPYNQNPL-DLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRK---------------- 236 (384)
T ss_pred -cC--eEEECCCCCcccCCch-hcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHH----------------
Confidence 77 4679998765442222 35799999999999987764 355555443 3333321100
Q ss_pred hccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceE-EEecCCCCCcc--cC
Q 010538 318 RRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVC-TIYGTYTSEVS--YH 394 (508)
Q Consensus 318 ~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~-~~~~~~~~~~~--~~ 394 (508)
......+. +.+++-...-..++.+.++..++++.+.+.|++.+ .+ +++-|.-.... ..
T Consensus 237 --------~~G~~~~~-----~~A~l~~~gL~tL~~R~~r~~~~a~~~a~~L~~~p------~v~~V~yPgl~~~~~~~~ 297 (384)
T PRK06434 237 --------TLGSNPDP-----IQAYLALRGLKTLGLRMEKHNKNGMELARFLRDSK------KISNVYYPDTEIGKKVLR 297 (384)
T ss_pred --------hcCCCCCH-----HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHcCC------CccEEECCChHHHHHhcC
Confidence 00111121 22222222223467788888999999999998874 44 34333310000 00
Q ss_pred CCCceEEEEeeC
Q 010538 395 DTGSMVSFNLKR 406 (508)
Q Consensus 395 ~~~~~v~~~~~~ 406 (508)
.-+++++|.+++
T Consensus 298 g~g~~~sf~l~~ 309 (384)
T PRK06434 298 GFGGMLSFELRS 309 (384)
T ss_pred CCCceEEEEECC
Confidence 127899999964
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.3e-17 Score=181.04 Aligned_cols=309 Identities=12% Similarity=0.061 Sum_probs=227.1
Q ss_pred hhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCC--CCCCeEEEecccccchHHHHH-HHHhcCCeEE
Q 010538 80 LATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPW--SHQSSYMYTMENHNSVLGIRE-YALSQGAAAF 156 (508)
Q Consensus 80 ~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~--~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~ 156 (508)
...-+.+-..+..++++.|.+.. +..+..++|.+.++++.+... +++++|++++..||.+...++ +++..|++++
T Consensus 105 QG~Le~l~e~Qt~i~eLtGm~~a--NaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~ 182 (939)
T TIGR00461 105 QGRLEALLNFQTVVSDLTGLPVA--NASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVI 182 (939)
T ss_pred hHHHHHHHHHHHHHHHHHCCChh--hhhccchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEE
Confidence 34556667789999999999987 788899999888877777432 334789999999999887666 6677899999
Q ss_pred EEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCcccccc
Q 010538 157 AIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEI 236 (508)
Q Consensus 157 ~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~ 236 (508)
.++.+ +++ +.+ ++..++++. .|..|.+.|+++|.+++|+
T Consensus 183 ~~~~~-----------------------~l~--~~~--------~~~~v~~q~-Pn~~G~ied~~~i~~~~h~------- 221 (939)
T TIGR00461 183 VVDCS-----------------------DIK--KAV--------DVFGCLLQY-PATDGSILDYKQLIDALHS------- 221 (939)
T ss_pred EEcHH-----------------------HHh--hcC--------CEEEEEEEC-CCCCeEEecHHHHHHHHHH-------
Confidence 88542 233 221 356666665 4778999999999999998
Q ss_pred CCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEecccc-----ccCCCcceEEEEechhHhhhccccccCceEEeccc
Q 010538 237 SPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKI-----FGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIA 311 (508)
Q Consensus 237 ~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~-----~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~ 311 (508)
+|+++++++.........+..++|+|+++++.++| ||||. .|++.+++++...+...+.|+..-.....
T Consensus 222 -----~gal~~~~ad~~al~ll~~Pge~GaDi~vg~~q~fg~p~g~GGP~-aG~~a~~~~l~r~lPgrivG~s~D~~G~~ 295 (939)
T TIGR00461 222 -----HKSLVSVAADLMALTLLTPPGHYGADIVLGSSQRFGVPMGYGGPH-AAFFAVKDEYNRKMPGRIVGVSKDALGNT 295 (939)
T ss_pred -----cCCEEEEEechHHhCCcCCHHHcCCcEEeeCCCccCCCCCCCCCc-eeeeeecHhhHhhCCCCceeEEecCCCCc
Confidence 89999998877777777888899999998888874 33563 79999999987777666665421000000
Q ss_pred chhhhhhccCccccccCCCCChhHHH---HHHHH--HHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecC
Q 010538 312 DIDFVKRRQGVEELFEDGTASFLSIA---SIRHG--FNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGT 386 (508)
Q Consensus 312 ~~~~~~~~~~~~~~~~~gt~~~~~~~---~l~~a--l~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~ 386 (508)
...+......+.-+++-+|.|+-..- ++.++ +.++...|++++.+++..++.+|.+.|.+. |+++..+
T Consensus 296 ~~~l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~-------G~~~~~~ 368 (939)
T TIGR00461 296 ALRLALQTREQHIRRDKATSNICTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLEND-------PHELINK 368 (939)
T ss_pred cceeecccccccccccccCcchhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC-------CCcccCC
Confidence 01111112234677888898875433 33335 567777899999999999999999999885 7888766
Q ss_pred CCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccc
Q 010538 387 YTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDI 466 (508)
Q Consensus 387 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 466 (508)
+- ...+.++++..+ ..++.+.|.++||.++..
T Consensus 369 ~f--------F~~~~v~~~~~~-----~~~i~~~~~~~gi~l~~~----------------------------------- 400 (939)
T TIGR00461 369 TW--------FDTLTVKVGNGI-----SSELLKAAEEFNINLRAV----------------------------------- 400 (939)
T ss_pred Cc--------cceEEEEeCCCC-----HHHHHHHHHHCCCeeeec-----------------------------------
Confidence 21 455666663222 245888999999997652
Q ss_pred cCCCCCceEEEecCCCCCHHHHHHHHHhhh
Q 010538 467 IHGKPTGAIRVSFGYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 467 ~~~~~~~~iRis~~~~~t~eev~~l~~~~~ 496 (508)
.++.+++|++-++|.+||+.+++++.
T Consensus 401 ----~~~~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 401 ----DTTTVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred ----CCCEEEEEeecCCCHHHHHHHHHHhc
Confidence 14689999999999999999999984
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-17 Score=158.53 Aligned_cols=324 Identities=14% Similarity=0.054 Sum_probs=224.4
Q ss_pred CHHHHHHHHHHhhccccCCCCC-ccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeE
Q 010538 53 SELQMEAIFRDFTTNVYGNPHS-QSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSY 131 (508)
Q Consensus 53 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~v 131 (508)
+|.++++..+.+ .++-..+.+ ....| +.+.....+.++|++-+-+. .++.+++-.|++.++.++ ..+.+.|
T Consensus 83 hPeii~a~~~al-eeyGaGlssvrfIcG--tq~iHk~LE~kiAqfh~rED----~ilypscfdANag~feai-l~pedAv 154 (417)
T KOG1359|consen 83 HPEIINAGQKAL-EEYGAGLSSVRFICG--TQDIHKLLESKIAQFHGRED----TILYPSCFDANAGAFEAI-LTPEDAV 154 (417)
T ss_pred ChHHHHHHHHHH-HHhCCCccceeEEec--chHHHHHHHHHHHHHhCCCc----eEEeccccccchHHHHHh-cChhhhh
Confidence 777888776544 343334443 23344 45677888999999988763 355566666888888888 6788999
Q ss_pred EEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCC
Q 010538 132 MYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSEC 211 (508)
Q Consensus 132 l~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~ 211 (508)
+..+.+|.|++..++++++++- +++ -.++ ..+. .+.+.+-++|+...+.
T Consensus 155 fSDeLNhASIIdGirLckry~h----~dv-----------------------~~l~--~~l~--~a~k~r~klv~TDg~F 203 (417)
T KOG1359|consen 155 FSDELNHASIIDGIRLCKRYRH----VDV-----------------------FDLE--HCLI--SACKMRLKLVVTDGVF 203 (417)
T ss_pred hccccccchhhhhhHHHhhhcc----chh-----------------------HHHH--HHHH--HhhhheEEEEEeccee
Confidence 9999999999999998875431 221 1111 1111 1234577999999999
Q ss_pred CCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCC--------CCCCCCcEEEEeccccccCCCcc
Q 010538 212 NFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPD--------LSKYPVDFVVMSFYKIFGYPTGL 283 (508)
Q Consensus 212 n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d--------~~~~~~D~~~~S~~K~~g~P~G~ 283 (508)
++.|.+.|+++|..++++ +|+++++|.+|+-|..-.. --.-++|++..+..|.+||..|
T Consensus 204 SMDGdiaPl~ei~~La~k------------YgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~G- 270 (417)
T KOG1359|consen 204 SMDGDIAPLEEISQLAKK------------YGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGASG- 270 (417)
T ss_pred ccCCCcccHHHHHHHHHh------------cCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCCC-
Confidence 999999999999999998 9999999999985432221 1122689999999999886665
Q ss_pred eEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 010538 284 GALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGM 363 (508)
Q Consensus 284 G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~ 363 (508)
|+.-.+.+++..++..-- +.-|. .+.++.......++++++.. -..+..+.....+
T Consensus 271 Gyttgp~~li~llrqr~R---------------------pylFS-nslppavV~~a~ka~dllm~--s~~~i~~~~a~~q 326 (417)
T KOG1359|consen 271 GYTTGPKPLISLLRQRSR---------------------PYLFS-NSLPPAVVGMAAKAYDLLMV--SSKEIQSRQANTQ 326 (417)
T ss_pred CCccCChhHHHHHHhcCC---------------------ceeec-CCCChhhhhhhHHHHHHHHh--hHHHHHHHHHHHH
Confidence 888888887665542200 11111 12222222223455665543 3556667788899
Q ss_pred HHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhc
Q 010538 364 YVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYL 443 (508)
Q Consensus 364 ~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~ 443 (508)
++++.+... |+++.+.. .+|..+.+.+... ..+..+.|-+.||.|..-+....|.+
T Consensus 327 rfr~~me~a-------GftIsg~~---------hPI~pv~lGda~l----A~~~ad~lLk~Gi~Vigfs~PvVP~g---- 382 (417)
T KOG1359|consen 327 RFREFMEAA-------GFTISGAS---------HPICPVMLGDARL----ASKMADELLKRGIYVIGFSYPVVPKG---- 382 (417)
T ss_pred HHHHHHHhc-------CceecCCC---------CCccceecccHHH----HHHHHHHHHhcCceEEeecCCcCCCC----
Confidence 999998875 89987654 4677777765321 23467788889999988666555542
Q ss_pred CCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhhh
Q 010538 444 GLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQF 504 (508)
Q Consensus 444 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~~ 504 (508)
...+|+.++..+|+||||++++++.+..+|.+.
T Consensus 383 ----------------------------kariRVqiSAaHt~edid~~i~Af~~vgr~~~~ 415 (417)
T KOG1359|consen 383 ----------------------------KARIRVQISAAHTEEDIDRLIEAFSEVGRFLNV 415 (417)
T ss_pred ----------------------------ceEEEEEEehhcCHHHHHHHHHHHHHHHHhhcc
Confidence 467999999999999999999998887777543
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.8e-18 Score=153.21 Aligned_cols=166 Identities=20% Similarity=0.187 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccC
Q 010538 86 VRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVD 165 (508)
Q Consensus 86 ~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~ 165 (508)
++++++.++++++.+.+ ++++++|+|+|+.+++.++ ..+++.|+++...|++... ..+...|++++.++.+....
T Consensus 2 ~~~~~~~l~~~~~~~~~--~~~~~~~~t~a~~~~~~~~-~~~~~~v~~~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~~ 76 (170)
T cd01494 2 LEELEEKLARLLQPGND--KAVFVPSGTGANEAALLAL-LGPGDEVIVDANGHGSRYW--VAAELAGAKPVPVPVDDAGY 76 (170)
T ss_pred HHHHHHHHHHHcCCCCC--cEEEeCCcHHHHHHHHHHh-CCCCCEEEEeecccceehh--hHHHhcCCEEEEeccCCCCc
Confidence 46788999999986666 7999999999999999998 4568899999999988863 34456799999998865433
Q ss_pred ccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeE
Q 010538 166 NDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWM 245 (508)
Q Consensus 166 ~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~ 245 (508)
.. . +.++++ +. ...++++++++++++|++|...|+++|.++|++ +|++
T Consensus 77 ~~-~------------~~~~~~--~~-----~~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~------------~~~~ 124 (170)
T cd01494 77 GG-L------------DVAILE--EL-----KAKPNVALIVITPNTTSGGVLVPLKEIRKIAKE------------YGIL 124 (170)
T ss_pred cc-h------------hhhhhh--hc-----cccCceEEEEEecCcCCCCeEcCHHHHHHHHHH------------cCCE
Confidence 21 0 112333 21 225788999999999999999999999999998 8999
Q ss_pred EEEeccccCCCCCC---CCCCCCCcEEEEeccccccCCCcceEEEEe
Q 010538 246 VLIDAAKGCVTQPP---DLSKYPVDFVVMSFYKIFGYPTGLGALIMR 289 (508)
Q Consensus 246 vivD~a~~~g~~~~---d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~ 289 (508)
+++|++++.+..+. +....++|+++.|+||++++ .|+|+++++
T Consensus 125 li~D~a~~~~~~~~~~~~~~~~~~d~~~~s~~K~~~~-~~~G~l~~~ 170 (170)
T cd01494 125 LLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNLGG-EGGGVVIVK 170 (170)
T ss_pred EEEecccccccccccccccccccCCEEEEEcccccCC-CceEEEEeC
Confidence 99999999877765 56677899999999999995 589999875
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.2e-17 Score=163.11 Aligned_cols=331 Identities=15% Similarity=0.061 Sum_probs=207.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA 163 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~ 163 (508)
....+.++++++++|++.. +.++|+|.|+.+++.++...+||+||++...+.+.. +..-..|++++.|+++.+
T Consensus 34 ~~v~~FE~~~ae~~G~k~a----va~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATa---n~i~~~Ga~PVFvDid~~ 106 (374)
T COG0399 34 PFVRRFEQAFAEYLGVKYA----VAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATA---NAVLLVGAKPVFVDIDPD 106 (374)
T ss_pred hHHHHHHHHHHHHhCCCeE----EEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHH---HHHHHcCCeEEEEecCCc
Confidence 3467788999999999854 777888889999999887899999999987665544 444456999999999964
Q ss_pred -cCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC
Q 010538 164 -VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG 242 (508)
Q Consensus 164 -~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~ 242 (508)
..+ |++.++ ++| +++||.|+..|. -|...|+++|.++|++ |
T Consensus 107 T~ni---------------d~~~ie--~aI------t~~tKAIipVhl---~G~~~dm~~i~~la~~------------~ 148 (374)
T COG0399 107 TLNI---------------DPDLIE--AAI------TPRTKAIIPVHL---AGQPCDMDAIMALAKR------------H 148 (374)
T ss_pred ccCC---------------CHHHHH--HHc------ccCCeEEEEehh---ccCCCCHHHHHHHHHH------------c
Confidence 566 799999 554 778999998876 6999999999999998 9
Q ss_pred CeEEEEeccccCCCCCCCCCCCC--CcEEEEecc--ccccCCCcceEEEEech-hHhhhccccccCceEEecccchhhhh
Q 010538 243 RWMVLIDAAKGCVTQPPDLSKYP--VDFVVMSFY--KIFGYPTGLGALIMRND-AAKLLKNTYFSGGTVAASIADIDFVK 317 (508)
Q Consensus 243 g~~vivD~a~~~g~~~~d~~~~~--~D~~~~S~~--K~~g~P~G~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~ 317 (508)
|++||.|++|+.|..--.- +.| -|+-++|+| |.+..-.| |.+..+++ +.++++-....|..... .|..
T Consensus 149 ~l~vIEDaAqa~Ga~y~gk-~vGt~Gd~~~fSF~~~K~ittgEG-Gav~tnd~ela~k~~~lr~hG~~~~~-----~~~y 221 (374)
T COG0399 149 GLPVIEDAAQAHGATYKGK-KVGSFGDIGAFSFHATKNLTTGEG-GAVVTNDEELAEKARSLRNHGLSRDA-----VFKY 221 (374)
T ss_pred CCeEEEEcchhccCeecCc-ccccccceEEEEecCCCCccccCc-eEEEeCCHHHHHHHHHHHHhCcCCCc-----cccc
Confidence 9999999999998764332 222 256666666 76661223 66666654 34444333222211000 0000
Q ss_pred hccCccccccCCC-CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCC
Q 010538 318 RRQGVEELFEDGT-ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDT 396 (508)
Q Consensus 318 ~~~~~~~~~~~gt-~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 396 (508)
...+.|. .. +--+.+|+.+.+-..++++.++-+++.++..+.|++++ ++.+..+... ..+
T Consensus 222 ------~~~~~G~N~r---m~~iqAAigl~QL~~l~~~~~~R~~~a~~Y~~~l~~~~------~~~~p~~~~~----~~~ 282 (374)
T COG0399 222 ------LHEELGYNYR---LTEIQAAIGLAQLERLDEINERRREIAQIYAEALKGLP------GITLPPEPDG----AVH 282 (374)
T ss_pred ------eeeecccccC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC------CccccCCCCC----cee
Confidence 0001111 11 22233333333223367777777889999999998873 4544433321 111
Q ss_pred -CceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceE
Q 010538 397 -GSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAI 475 (508)
Q Consensus 397 -~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i 475 (508)
..+..+.+++. ..+...+...|+++||. .+.++.+-..++++.. .+......-++ -.......+
T Consensus 283 ~~~~~~i~~~~~---~~~R~~l~~~L~~~gi~--~~~~~~P~~~~~~~~~--------~~~~~~~~lp~--ae~~~~r~l 347 (374)
T COG0399 283 AWHLYTILVDEE---GISRDALMESLKEAGVG--AVVYFRPLHLQPAYRQ--------LGYFPEGDLPN--AEDLSERIL 347 (374)
T ss_pred eeeeeEEEecCC---CCCHHHHHHHHHhCCCC--ceEEeeccccchhhhc--------ccccccCCCch--HHHHhhCeE
Confidence 23334444432 23456699999999888 2223322111111110 00000000000 001135689
Q ss_pred EEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 476 RVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 476 Ris~~~~~t~eev~~l~~~~~~~~~ 500 (508)
++-++..-|.+|++++++.++++++
T Consensus 348 ~LP~~p~l~~~~~~~V~~~l~~~~~ 372 (374)
T COG0399 348 SLPLHPNLSEEDVDRVIEALKEVLG 372 (374)
T ss_pred EccCCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998764
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-16 Score=163.77 Aligned_cols=339 Identities=12% Similarity=0.065 Sum_probs=210.2
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..+. |--+|.+++++.+... . +......+ .....+.+++.++++.+. + .++|++++
T Consensus 29 dg~~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~-~-~~~~~~~~-----~~~~~~~~~~~l~~~~~~--~--~~~~~~SG 97 (400)
T PTZ00125 29 EGKKYYDFLSAYSAVNQGHCHPKILAALINQAQ-K-LTLTSRAF-----YNDVLGLAEKYITDLFGY--D--KVLPMNSG 97 (400)
T ss_pred CCCEEEEcccCHhhccCCcCCHHHHHHHHHHHH-h-cccccccc-----cCHHHHHHHHHHHhCCCC--C--EEEEeCCc
Confidence 67778887542 2248888888766542 2 11111111 134677888899988875 3 68899999
Q ss_pred HHHHHHHHhhcC--------C-CCCCeEEEecc-cccchHHHHHHHHhcCCeEE--EEccCCcc-Ccccccccccccccc
Q 010538 113 TAALKLVGEAFP--------W-SHQSSYMYTME-NHNSVLGIREYALSQGAAAF--AIDVEEAV-DNDGLSESLVTSTKI 179 (508)
Q Consensus 113 t~al~~~~~~l~--------~-~~g~~vl~~~~-~h~s~~~~~~~~~~~G~~v~--~v~~~~~~-~~~~l~~~~~~~~~~ 179 (508)
++|+..++.... . ..++.|++... .|........... +.... ..+..... .+.
T Consensus 98 s~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~------------ 163 (400)
T PTZ00125 98 AEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSAST--DPKCYNNFGPFVPGFELVD------------ 163 (400)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcC--CcchhccCCCCCCCceEeC------------
Confidence 999998887652 0 12355665554 4444443333211 10000 00110000 000
Q ss_pred ccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecccc-C
Q 010538 180 SLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKG-C 254 (508)
Q Consensus 180 ~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~-~ 254 (508)
-.|+++++ +.+. .+++++|++..++|++|.+.| +++|.++|++ +|+++|+|++|+ +
T Consensus 164 ~~d~~~le--~~l~-----~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~------------~~~lli~Dev~~g~ 224 (400)
T PTZ00125 164 YNDVEALE--KLLQ-----DPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKK------------YNVLLIVDEIQTGL 224 (400)
T ss_pred CCCHHHHH--HHhC-----CCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHH------------cCCEEEEeccccCC
Confidence 01577888 6653 257899999999999999998 8888888887 999999999986 4
Q ss_pred CCC----CCCCCCCCCcEEEEeccccccCCC-cceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCC
Q 010538 255 VTQ----PPDLSKYPVDFVVMSFYKIFGYPT-GLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDG 329 (508)
Q Consensus 255 g~~----~~d~~~~~~D~~~~S~~K~~g~P~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 329 (508)
|.. ..+......|++++| |.++++. .+|++++++++.+.+.....+. . .
T Consensus 225 g~~G~~~~~~~~~~~pd~~~~s--K~l~~g~~~ig~v~~~~~~~~~~~~~~~~~-----------------------t-~ 278 (400)
T PTZ00125 225 GRTGKLLAHDHEGVKPDIVLLG--KALSGGLYPISAVLANDDVMLVIKPGEHGS-----------------------T-Y 278 (400)
T ss_pred CccchhhHHHhcCCCCCEEEEc--ccccCCCcCcEEEEEcHHHHhhccCCCCCC-----------------------C-C
Confidence 321 122233356887765 9888432 4899999999877655321100 0 1
Q ss_pred CCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCC
Q 010538 330 TASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDG 409 (508)
Q Consensus 330 t~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 409 (508)
+.+....++..++++++.+.+ +.++..++.+++++.|+++.. ..+.+..+.+ .+.++++.++..+.
T Consensus 279 ~~~~~~~~aa~~~l~~i~~~~---~~~~~~~~~~~l~~~l~~l~~--~~~~~~~~~~---------~g~~~~v~~~~~~~ 344 (400)
T PTZ00125 279 GGNPLACAVAVEALEVLKEEK---LAENAQRLGEVFRDGLKELLK--KSPWVKEIRG---------KGLLNAIVFDHSDG 344 (400)
T ss_pred CcCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHh--cCCCeEEEec---------ccEEEEEEEccCcc
Confidence 123445556666788776543 456677778888888866410 0012221211 16677777754221
Q ss_pred CccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHH
Q 010538 410 SWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAK 489 (508)
Q Consensus 410 ~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~ 489 (508)
.....+.+.|.++||.+.++. .+.+||++++.+|.+|++
T Consensus 345 --~~~~~~~~~l~~~Gv~v~~~~---------------------------------------~~~lRi~~~~~~~~~~i~ 383 (400)
T PTZ00125 345 --VNAWDLCLKLKENGLLAKPTH---------------------------------------DNIIRFAPPLVITKEQLD 383 (400)
T ss_pred --hHHHHHHHHHHHCCeEEeecC---------------------------------------CCEEEEECCccCCHHHHH
Confidence 233457788888999987631 468999999999999999
Q ss_pred HHHHhhhhhhhhh
Q 010538 490 VNRCSSFDFVNFS 502 (508)
Q Consensus 490 ~l~~~~~~~~~~~ 502 (508)
++++.+.+.++-+
T Consensus 384 ~~l~~l~~~l~~~ 396 (400)
T PTZ00125 384 QALEIIKKVLKSF 396 (400)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877654
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-16 Score=166.61 Aligned_cols=160 Identities=13% Similarity=0.023 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHH-HHhcCCeEEEEccCC
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREY-ALSQGAAAFAIDVEE 162 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~-~~~~G~~v~~v~~~~ 162 (508)
...+.+++.+|++.|... .+.++|++.|+.+++.++ .++||+||++...|.+....... +...|+++.+++..
T Consensus 61 Ptv~~lE~~la~leg~~~----av~~~SG~aAi~~al~al-l~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~- 134 (432)
T PRK06702 61 PTLAAFEQKLAELEGGVG----AVATASGQAAIMLAVLNI-CSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPN- 134 (432)
T ss_pred cHHHHHHHHHHHHhCCCc----EEEECCHHHHHHHHHHHh-cCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCC-
Confidence 346778999999999964 467899999999999888 78999999999777766555443 57789999998642
Q ss_pred ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC
Q 010538 163 AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG 242 (508)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~ 242 (508)
+ |+++++ ++| +++|++|++.++.||++.+.|+++|.++|++ +
T Consensus 135 ---~---------------d~~~l~--~~I------~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~------------~ 176 (432)
T PRK06702 135 ---L---------------TADEIV--ALA------NDKTKLVYAESLGNPAMNVLNFKEFSDAAKE------------L 176 (432)
T ss_pred ---C---------------CHHHHH--HhC------CcCCeEEEEEcCCCccccccCHHHHHHHHHH------------c
Confidence 2 467788 554 6789999999999999999999999999998 9
Q ss_pred CeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc-ceEEEE
Q 010538 243 RWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG-LGALIM 288 (508)
Q Consensus 243 g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G-~G~l~~ 288 (508)
|+++++|.+.+.+.. ....+.++|+++.|.+|+++|..+ +|.+++
T Consensus 177 gi~livD~T~~tP~~-~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~ 222 (432)
T PRK06702 177 EVPFIVDNTLATPYL-CQAFEHGANIIVHSTTKYIDGHASSLGGIVI 222 (432)
T ss_pred CCEEEEECCCCchhh-CChhhcCCCEEEEccccccCCCcceeceEEE
Confidence 999999999853311 122356899999999999997755 444443
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.8e-16 Score=163.69 Aligned_cols=334 Identities=13% Similarity=0.083 Sum_probs=201.7
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..+ .+.-+|.+++++.++.. ...... ..+ ......++.++++++.+ .+ +++|++|+
T Consensus 29 dG~~~lD~~~g~~~~~lGh~~p~v~~a~~~~~~-~~~~~~-~~~-----~~~~~~~la~~l~~~~~--~~--~v~~~~sG 97 (389)
T PRK01278 29 DGERYLDFASGIAVNSLGHAHPHLVEALKEQAE-KLWHVS-NLY-----RIPEQERLAERLVENSF--AD--KVFFTNSG 97 (389)
T ss_pred CCCEEEECCccHhhccCCCCCHHHHHHHHHHHH-hcCccc-ccc-----CChHHHHHHHHHHhhCC--CC--EEEEcCCc
Confidence 6788999755 35557888888766543 211111 111 12334556677777763 35 79999999
Q ss_pred HHHHHHHHhhcC---CCCC----CeEEEecccccchHHHHHHHHhcCCeEEE---EccCCccC-cccccccccccccccc
Q 010538 113 TAALKLVGEAFP---WSHQ----SSYMYTMENHNSVLGIREYALSQGAAAFA---IDVEEAVD-NDGLSESLVTSTKISL 181 (508)
Q Consensus 113 t~al~~~~~~l~---~~~g----~~vl~~~~~h~s~~~~~~~~~~~G~~v~~---v~~~~~~~-~~~l~~~~~~~~~~~~ 181 (508)
++|+..++.++. ..+| .+|++.+..|++...+...+ .+..... .|...+.. +. -+
T Consensus 98 seA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------------~~ 163 (389)
T PRK01278 98 AEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAA--GGQEKYLEGFGPLVPGFDQVP------------FG 163 (389)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhc--cCChhhcccCCCCCCCceEeC------------CC
Confidence 999999877652 2233 37887776666554333222 1211110 01111000 00 02
Q ss_pred chhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCc-cccCHHHHHHHHcCCccccccCCCCCCCeEEEEecccc-CCCCC-
Q 010538 182 LPIQRRKGASFPERDPAGDAYNLFAFPSECNFSG-SRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKG-CVTQP- 258 (508)
Q Consensus 182 d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG-~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~-~g~~~- 258 (508)
|++.++ +++ ++++++|++..+++++| ..+|.+.+.++++ +|+++|+++|+|++|+ +|...
T Consensus 164 d~~~l~--~~l------~~~~~avivep~~~~~G~~~~~~~~l~~l~~---------l~~~~g~~lI~DEv~~g~g~~g~ 226 (389)
T PRK01278 164 DIEALK--AAI------TPNTAAILIEPIQGEGGIRPAPDEFLKGLRQ---------LCDENGLLLIFDEVQCGMGRTGK 226 (389)
T ss_pred CHHHHH--Hhh------CCCeEEEEEecccCCCCCcCCCHHHHHHHHH---------HHHHcCCEEEEeccccCCCcCCc
Confidence 577888 555 35789999999999999 5556555555444 4445999999999987 32211
Q ss_pred ---CCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCCh
Q 010538 259 ---PDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASF 333 (508)
Q Consensus 259 ---~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~ 333 (508)
.+......|++ +++|.++ + | +|+++++++..+.+.....+ .. .+.|.
T Consensus 227 ~~~~~~~~~~pdi~--t~sK~l~-~-G~~ig~~~~~~~~~~~~~~~~~~-----------------------~t-~~~~~ 278 (389)
T PRK01278 227 LFAHEWAGVTPDIM--AVAKGIG-G-GFPLGACLATEEAAKGMTPGTHG-----------------------ST-YGGNP 278 (389)
T ss_pred ceeecccCCCCCEE--EEehhcc-C-CcceEEEEEcHHHHhccCCCCCC-----------------------CC-CCccH
Confidence 11222345654 5679887 5 4 89999998876655432111 11 12445
Q ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccC
Q 010538 334 LSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFG 413 (508)
Q Consensus 334 ~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 413 (508)
...++..++++.+.+ +...++..++.+++.+.|+.+.. ..++ ++..... .+.++++.+.. +
T Consensus 279 ~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~l~~l~~--~~~~--~~~~v~g------~G~~~~i~~~~------~ 339 (389)
T PRK01278 279 LAMAVGNAVLDVILA---PGFLDNVQRMGLYLKQKLEGLVD--RFPD--VIEEVRG------KGLLLGLKCVV------P 339 (389)
T ss_pred HHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHh--hCCC--ceeeEec------ccEEEEEEEec------C
Confidence 556666677887644 34556777777777777765421 0011 1111111 15666666632 1
Q ss_pred HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHH
Q 010538 414 YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRC 493 (508)
Q Consensus 414 ~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~ 493 (508)
...+.+.|.++||.+.++. .+.+|+++++..|+++++++++
T Consensus 340 ~~~~~~~l~~~GV~~~p~~---------------------------------------~~~lR~~p~~~~~~~~i~~~l~ 380 (389)
T PRK01278 340 NRDLVQALRDEGLLTVGAG---------------------------------------DNVVRLLPPLIITEEEIDEALE 380 (389)
T ss_pred HHHHHHHHHHCCeEEeecC---------------------------------------CCEEEEeCCcccCHHHHHHHHH
Confidence 2347788888899987641 4689999998899999999999
Q ss_pred hhhhhhh
Q 010538 494 SSFDFVN 500 (508)
Q Consensus 494 ~~~~~~~ 500 (508)
.+.++++
T Consensus 381 ~l~~~l~ 387 (389)
T PRK01278 381 RLERAAE 387 (389)
T ss_pred HHHHHHH
Confidence 9988764
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.9e-16 Score=162.03 Aligned_cols=339 Identities=13% Similarity=0.091 Sum_probs=203.1
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhc--------CCCCCCeEEEecccccchHHHHHHHHhcCCeEE
Q 010538 85 IVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAF--------PWSHQSSYMYTMENHNSVLGIREYALSQGAAAF 156 (508)
Q Consensus 85 ~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l--------~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~ 156 (508)
...+.++.+|+++|.+ .+++++|+|+|+.+++.++ ..++|++||++...|+++...+. ..|++++
T Consensus 64 ~~~~fe~~lA~~~g~~----~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~---~~G~~pv 136 (438)
T PRK15407 64 FNDAFEKKLAEFLGVR----YALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPII---QNGLVPV 136 (438)
T ss_pred hHHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHH---HcCCEEE
Confidence 3677899999999985 4788999999999988876 45789999999988887765544 4599999
Q ss_pred EEccCC-ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccc
Q 010538 157 AIDVEE-AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILE 235 (508)
Q Consensus 157 ~v~~~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~ 235 (508)
.++++. ...+ |+++++ +++ +++|++|+++|. +|...++++|.++|++
T Consensus 137 ~vdvd~~~~~i---------------d~~~le--~~i------~~~tkaVi~~~~---~G~p~dl~~I~~la~~------ 184 (438)
T PRK15407 137 FVDVELPTYNI---------------DASLLE--AAV------SPKTKAIMIAHT---LGNPFDLAAVKAFCDK------ 184 (438)
T ss_pred EEecCCCcCCc---------------CHHHHH--HHc------CcCCeEEEEeCC---CCChhhHHHHHHHHHH------
Confidence 998863 3344 688888 444 568899998874 7889999999999998
Q ss_pred cCCCCCCCeEEEEeccccCCCCCCC--CCCCCCcEEEEecc--c-cccCCCcceEEEEechhHhhhccccccCceEEec-
Q 010538 236 ISPFSKGRWMVLIDAAKGCVTQPPD--LSKYPVDFVVMSFY--K-IFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAAS- 309 (508)
Q Consensus 236 ~~~~~~~g~~vivD~a~~~g~~~~d--~~~~~~D~~~~S~~--K-~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~- 309 (508)
+|++||+|++|+.|...-+ +...+ |+.++|+| | +..|. | |+++.+++.+....+.+..++.....
T Consensus 185 ------~gi~vIeDaa~a~G~~~~g~~~G~~g-d~~~fSf~~~k~~~~ge-G-G~l~t~d~~l~~~~~~~~~~G~~~~~~ 255 (438)
T PRK15407 185 ------HNLWLIEDNCDALGSTYDGRMTGTFG-DIATLSFYPAHHITMGE-G-GAVFTNDPLLKKIIESFRDWGRDCWCA 255 (438)
T ss_pred ------CCCEEEEECccchhhhcCCeeeeccC-ceEEEeCCCCCCccccC-c-eEEEECCHHHHHHHHHHHHhCcccccc
Confidence 9999999999999887644 23333 88888887 4 33323 5 88888877655433333222211000
Q ss_pred c--c---chhhhhhccCc----cccc---cCCC-CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCC
Q 010538 310 I--A---DIDFVKRRQGV----EELF---EDGT-ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHEN 376 (508)
Q Consensus 310 ~--~---~~~~~~~~~~~----~~~~---~~gt-~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~ 376 (508)
. . ...+....... ...+ ..|. .....+ .+|+-..+-..++.+.++-+++++++.+.|..+++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~rmsel---~AAig~~qL~~l~~~~~~R~~~a~~y~~~L~~~~~-- 330 (438)
T PRK15407 256 PGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGYNLKITDM---QAAIGLAQLEKLPGFIEARKANFAYLKEGLASLED-- 330 (438)
T ss_pred cccccccccccccccccccccccccccccccccccCccHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--
Confidence 0 0 00000000000 0000 1121 111212 22222211122577778888889999999987631
Q ss_pred CCceEEEecCCCCCcccCCCC-ceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcC---CC-hhhhh
Q 010538 377 GADVCTIYGTYTSEVSYHDTG-SMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLG---LS-HSDLL 451 (508)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~---~~-~s~~~ 451 (508)
.+.+...+.. .... ....+.+++.. .++..++.+.|.++||.++..... +-..++++. .. ...+.
T Consensus 331 ---~~~~~~~~~~----~~~~~~~~~i~~~~~~--~~~Rd~l~~~L~~~GI~~~~~~~~-~~~~~p~~~~~~~~~~~~~P 400 (438)
T PRK15407 331 ---FLILPEATPN----SDPSWFGFPITVKEDA--GFTRVELVKYLEENKIGTRLLFAG-NLTRQPYFKGVKYRVVGELT 400 (438)
T ss_pred ---ccccCcCCCC----CeeEEEEEEEEECCcC--CCCHHHHHHHHHHCCCCccccCCC-ccccChhhhhcCCCCCCCCh
Confidence 1222211111 0111 23344443321 234567999999999987753210 000011110 00 00000
Q ss_pred hhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 452 SNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
.+ .......+-+-+|..-|++|++++++.++++++
T Consensus 401 ~a--------------e~~~~~~l~LP~~~~l~~~~v~~i~~~i~~~~~ 435 (438)
T PRK15407 401 NT--------------DRIMNDTFWIGVYPGLTEEMLDYVIEKIEEFFG 435 (438)
T ss_pred HH--------------HHHHhCeEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 00 001245677878877899999999999998875
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-16 Score=162.19 Aligned_cols=328 Identities=14% Similarity=0.098 Sum_probs=199.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccC-C
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVE-E 162 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~-~ 162 (508)
...++.++.+++++|.+ .++.++|+|.|+.+++.++..++|++|+++...++++...+. ..|++++.++++ .
T Consensus 25 ~~~~~fE~~~a~~~g~~----~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~---~~G~~pv~~Di~~~ 97 (363)
T PF01041_consen 25 PYVEEFEKEFAEYFGVK----YAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAIL---WAGAEPVFVDIDPE 97 (363)
T ss_dssp HHHHHHHHHHHHHHTSS----EEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHH---HTT-EEEEE-BETT
T ss_pred HHHHHHHHHHHHHhCCC----eEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHH---HhccEEEEEeccCC
Confidence 45788899999999976 568889999999999999988999999999988877765544 459999999998 4
Q ss_pred ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC
Q 010538 163 AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG 242 (508)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~ 242 (508)
...+ |++.++ +. ++++|+.|+++|. -|...|+++|.++|++ +
T Consensus 98 ~~~i---------------d~~~~~--~~------i~~~t~ai~~~h~---~G~~~d~~~i~~~~~~------------~ 139 (363)
T PF01041_consen 98 TLNI---------------DPEALE--KA------ITPKTKAILVVHL---FGNPADMDAIRAIARK------------H 139 (363)
T ss_dssp TSSB----------------HHHHH--HH------HHTTEEEEEEE-G---GGB---HHHHHHHHHH------------T
T ss_pred cCCc---------------CHHHHH--HH------hccCccEEEEecC---CCCcccHHHHHHHHHH------------c
Confidence 5666 788898 44 4678999998875 6899999999999998 9
Q ss_pred CeEEEEeccccCCCCCCC--CCCCCCcEEEEecc--ccccCCCcceEEEEechh-HhhhccccccCceEEecccchhhhh
Q 010538 243 RWMVLIDAAKGCVTQPPD--LSKYPVDFVVMSFY--KIFGYPTGLGALIMRNDA-AKLLKNTYFSGGTVAASIADIDFVK 317 (508)
Q Consensus 243 g~~vivD~a~~~g~~~~d--~~~~~~D~~~~S~~--K~~g~P~G~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~~~~~~~ 317 (508)
|++||.|++|+.|...-. +... -|+.++|+| |.+....| |+++.+++. .++++.....|.. . .....+
T Consensus 140 ~i~lIeD~a~a~g~~~~g~~~G~~-gd~~~fSf~~~K~i~~geG-G~v~~~~~~~~~~~~~~~~~g~~-~--~~~~~~-- 212 (363)
T PF01041_consen 140 GIPLIEDAAQAFGARYKGRPVGSF-GDIAIFSFHPTKIITTGEG-GAVVTNDPELAERARALRNHGRS-R--DAFRRY-- 212 (363)
T ss_dssp T-EEEEE-TTTTT-EETTEETTSS-SSEEEEESSTTSSS-SSS--EEEEESTHHHHHHHHHHTBTTEE-T--SECSTT--
T ss_pred CCcEEEccccccCceeCCEeccCC-CCceEecCCCCCCCcCCCC-eeEEecHHHHHHHhhhhhccCcC-c--cccccc--
Confidence 999999999999864322 1222 389999986 77653434 888887644 3334322211110 0 000000
Q ss_pred hccCccccccCC-CCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCC
Q 010538 318 RRQGVEELFEDG-TASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDT 396 (508)
Q Consensus 318 ~~~~~~~~~~~g-t~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 396 (508)
......| ...+..+.+.. ++..+. .++.+.++-+++.+++.+.|...+ ++.....+.... ...
T Consensus 213 -----~~~~~~g~n~rm~~~~AAi-gl~QL~--~L~~~~~~R~~~a~~y~~~L~~~~------~~~~~~~~~~~~--~~~ 276 (363)
T PF01041_consen 213 -----RHELPPGYNFRMSELQAAI-GLAQLK--RLDEIIARRRENAQRYREALAGIP------GIKPPPIPDGAE--RSS 276 (363)
T ss_dssp -----EESSSS--B-B-BHHHHHH-HHHHHH--THHHHHHHHHHHHHHHHHHHTTGT------TEEEEGCGTTTE--EBC
T ss_pred -----cccccCCcccccHHHHHHH-HHHHHH--HhhhhHHHHHHHHHHHHHHHhcCC------Cccccccccccc--ccc
Confidence 0000001 01111121111 222222 267777788899999999999984 675554333200 011
Q ss_pred CceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCC----hhhhhhhhhcCCccCCCccccCCCCC
Q 010538 397 GSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLS----HSDLLSNIEAGHVCWDDNDIIHGKPT 472 (508)
Q Consensus 397 ~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~----~s~~~~~~~~~~~~~~~~~~~~~~~~ 472 (508)
.....+.+++... .+...+.+.|.++||.++... +.+-..++.+.-. +..+..+- ....
T Consensus 277 ~~~f~i~~~~~~~--~~rd~l~~~L~~~GI~~~~~~-~~pl~~~~~~~~~~~~~~~~~P~ae--------------~l~~ 339 (363)
T PF01041_consen 277 YYRFPIRLPDEAL--ADRDELVEALRARGIETRPHY-PKPLHRQPVYRSYPYYAPGDLPNAE--------------RLSQ 339 (363)
T ss_dssp ESSEEEEETCCGC--STHHHHHHHHHHTTBEEBCST-SSCGGGSGGGTTGEEEETSSSHHHH--------------HHHH
T ss_pred ccccccccccccc--chHHHHHHHHHHCCCcccccc-cCchhhhHHHHhcCccccCCCHHHH--------------HHHh
Confidence 3345556654321 234679999999999998764 1111111111100 00011111 0125
Q ss_pred ceEEEecCCCCCHHHHHHHHHhhh
Q 010538 473 GAIRVSFGYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 473 ~~iRis~~~~~t~eev~~l~~~~~ 496 (508)
..+.+-++..-|.+|++++++.|+
T Consensus 340 r~l~LP~~~~lt~edv~~I~~~ir 363 (363)
T PF01041_consen 340 RLLSLPIHPRLTEEDVDYIAEAIR 363 (363)
T ss_dssp HEEEEEHSTTSCHHHHHHHHHHHH
T ss_pred CeEECcCCCCCCHHHHHHHhhccC
Confidence 689999999999999999998874
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.1e-16 Score=161.39 Aligned_cols=334 Identities=13% Similarity=0.098 Sum_probs=198.5
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+. ++-+|.+.+++.+.+ .... .....+ ......++.++++++.+. + ++++++|+
T Consensus 37 dg~~~iD~~~g~~~~~lG~~~p~v~~a~~~~~-~~~~-~~~~~~-----~~~~~~~la~~l~~~~~~--~--~v~~~~gg 105 (396)
T PRK02627 37 DGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQA-AKLI-HTSNLY-----YIEPQEELAEKLVELSGM--D--KVFFCNSG 105 (396)
T ss_pred CCCEEEECCccHHhccCCCCCHHHHHHHHHHH-hhcc-cccccc-----CCHHHHHHHHHHHhhcCC--C--EEEECCCc
Confidence 67778887652 333577777765543 2211 111111 134556677888888765 5 79999999
Q ss_pred HHHHHHHHhhcCCCCC------CeEEEecccccchHHHHHHHHhcCCeEEE---EccCCccCccccccccccccccccch
Q 010538 113 TAALKLVGEAFPWSHQ------SSYMYTMENHNSVLGIREYALSQGAAAFA---IDVEEAVDNDGLSESLVTSTKISLLP 183 (508)
Q Consensus 113 t~al~~~~~~l~~~~g------~~vl~~~~~h~s~~~~~~~~~~~G~~v~~---v~~~~~~~~~~l~~~~~~~~~~~~d~ 183 (508)
++|+.+++..+....+ +.|++....+.........+ .+..... .+...+ +.. .-..|+
T Consensus 106 ~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~--~~~---------~~~~d~ 172 (396)
T PRK02627 106 AEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSA--TGQPKYQEGFEPLVEG--FIY---------VPFNDI 172 (396)
T ss_pred HHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHh--cCCccccccCCCCCCC--ceE---------eCCCCH
Confidence 9999999886521111 56766654443332221111 1211111 111110 000 001157
Q ss_pred hhhhcCCCCCCCCCCCCCceEEEEeCCCCCCc-cccCHHHHHHHHcCCccccccCCCCCCCeEEEEecccc-CCCC----
Q 010538 184 IQRRKGASFPERDPAGDAYNLFAFPSECNFSG-SRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKG-CVTQ---- 257 (508)
Q Consensus 184 ~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG-~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~-~g~~---- 257 (508)
++++ +++ .+++++|++..++|++| ..+|.+.+.++.+ +|+++|+++|+|++++ +|..
T Consensus 173 ~~l~--~~i------~~~~~~vii~p~~~~~G~~~~~~~~l~~l~~---------l~~~~~~~lI~DE~~~g~g~~g~~~ 235 (396)
T PRK02627 173 EALK--AAI------TDKTAAVMLEPIQGEGGVNPADKEYLQALRE---------LCDENGILLILDEVQTGMGRTGKLF 235 (396)
T ss_pred HHHH--Hhc------CCCeEEEEEecccCCCCCccCCHHHHHHHHH---------HHHHcCCEEEEechhcCCCccCcee
Confidence 7788 554 46789999999999999 5666544444333 3344999999999987 3322
Q ss_pred CCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhH
Q 010538 258 PPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLS 335 (508)
Q Consensus 258 ~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~ 335 (508)
..+......|++ +++|.++ + | +|++++++++++.+.+.... ...+.+...
T Consensus 236 ~~~~~~~~pdi~--t~sK~~~-~-G~rig~~~~~~~~~~~~~~~~~~------------------------~t~~~~~~~ 287 (396)
T PRK02627 236 AYQHYGIEPDIM--TLAKGLG-G-GVPIGAVLAKEKVADVFTPGDHG------------------------STFGGNPLA 287 (396)
T ss_pred eehhcCCCCCEE--EEcchhh-C-CcccEEEEEcHHHHhccCCCCCC------------------------CCCCCCHHH
Confidence 111222245655 4669888 5 4 89999998876655432100 011234455
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHH
Q 010538 336 IASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYR 415 (508)
Q Consensus 336 ~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 415 (508)
.++..++++.+.+ +...++.+++.+++++.|.++.. ..+.+..+ .+ .+.++++.+.. +..
T Consensus 288 ~~aa~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~--~~-------~g~~~~i~~~~------~~~ 347 (396)
T PRK02627 288 CAAALAVIEIIEE---EGLLENAAEVGEYLRAKLRELLE--KYPGIKEV--RG-------LGLMIGIELDR------PAA 347 (396)
T ss_pred HHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHH--hCCCeeee--cc-------CcEEEEEEecC------cHH
Confidence 6666667776544 34567777777777777765420 00112111 11 26778888721 224
Q ss_pred HHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhh
Q 010538 416 EVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSS 495 (508)
Q Consensus 416 ~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~ 495 (508)
++.+.|.++||.+.++. .+++|+++++..|.++++++++.|
T Consensus 348 ~~~~~l~~~Gv~v~~~~---------------------------------------~~~lRi~~~~~~~~~~i~~~~~~l 388 (396)
T PRK02627 348 EIVKKALEKGLLINVTG---------------------------------------DNVLRLLPPLIISKEEIDEAVDRL 388 (396)
T ss_pred HHHHHHHHCCeEEeecC---------------------------------------CCEEEEECCcccCHHHHHHHHHHH
Confidence 57788888899997741 367999999899999999999999
Q ss_pred hhhhh
Q 010538 496 FDFVN 500 (508)
Q Consensus 496 ~~~~~ 500 (508)
.++++
T Consensus 389 ~~~l~ 393 (396)
T PRK02627 389 EEVLK 393 (396)
T ss_pred HHHHH
Confidence 88764
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.2e-17 Score=167.47 Aligned_cols=293 Identities=17% Similarity=0.118 Sum_probs=187.2
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE 162 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~ 162 (508)
...+.++++.+|+.+|++.. ..+++|+|.++..++.++ .++|+.|+++...|-|++..+.+. |+++++++...
T Consensus 65 ~G~I~eAe~~aA~~fGAd~t---~flvnGsT~g~~a~i~a~-~~~gd~VLv~RN~HkSv~~alil~---ga~Pvyi~p~~ 137 (417)
T PF01276_consen 65 EGIIKEAEELAARAFGADKT---FFLVNGSTSGNQAMIMAL-CRPGDKVLVDRNCHKSVYNALILS---GAIPVYIPPED 137 (417)
T ss_dssp BTHHHHHHHHHHHHHTESEE---EEESSHHHHHHHHHHHHH-TTTTCEEEEETT--HHHHHHHHHH---TEEEEEEEEEE
T ss_pred ccHHHHHHHHHHHhcCCCeE---EEEecCchHHHHHHHHHh-cCCCCEEEEcCCcHHHHHHHHHHc---CCeEEEecCCc
Confidence 34588899999999999865 788899999999999998 689999999999999998876655 99999997652
Q ss_pred c-cCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCC
Q 010538 163 A-VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK 241 (508)
Q Consensus 163 ~-~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~ 241 (508)
+ ..+ ...+..-.++.+.++ ++|++.. ....+++|+++++ |..|.+.|+++|.++||+
T Consensus 138 ~~~gi------~~~i~~~~~~~~~i~--~~l~~~p-~~k~~~~vvlt~P-TY~Gv~~di~~I~~~~h~------------ 195 (417)
T PF01276_consen 138 NEYGI------IGGISPDEFNEEDIE--EALKEHP-DAKAPRLVVLTSP-TYYGVCYDIKEIAEICHK------------ 195 (417)
T ss_dssp -TTS-------BEEB-GGGGSHHHHH--HHHHHCT-TCHCESEEEEESS--TTSEEE-HHHHHHHHCC------------
T ss_pred cccCC------ccCCChhhhhHHHHH--HHHHhCc-cccCceEEEEeCC-CCCeEEECHHHHHHHhcc------------
Confidence 1 111 000111111336676 5554321 1112566888885 668999999999999998
Q ss_pred CCeEEEEeccccC--CC--CCCCCCCCCCc-------EEEEeccccccCCCcceEEEEechh-H--hhhccccccCceEE
Q 010538 242 GRWMVLIDAAKGC--VT--QPPDLSKYPVD-------FVVMSFYKIFGYPTGLGALIMRNDA-A--KLLKNTYFSGGTVA 307 (508)
Q Consensus 242 ~g~~vivD~a~~~--g~--~~~d~~~~~~D-------~~~~S~~K~~g~P~G~G~l~~~~~~-~--~~l~~~~~g~~~~~ 307 (508)
++++|+||+||+. +. .|.+-..+++| +++-|.||++++.+..+++.++.+. + ++++..
T Consensus 196 ~~~~llvDEAhGah~~F~~lp~~a~~~gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~v~~~~~~~~-------- 267 (417)
T PF01276_consen 196 HGIPLLVDEAHGAHFGFHPLPRSALALGADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRIVDHERVNEA-------- 267 (417)
T ss_dssp TECEEEEE-TT-TTGGCSGGGTTCSSTTSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCCTTHHHHHHH--------
T ss_pred cCCEEEEEccccccccCCCCccchhhccCccccccceeeeechhhcccccccceEEEecCCCcccHHHHHHH--------
Confidence 9999999999874 22 23334456899 9999999998878778999998774 2 222221
Q ss_pred ecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCC
Q 010538 308 ASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTY 387 (508)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~ 387 (508)
-..+...+|+++.++++..|..++....-+++.++..++++.+++.++++. ...++++++|.
T Consensus 268 ---------------l~~~~TTSPSY~lmASlD~a~~~m~~~~G~~l~~~~i~~a~~~R~~i~~~~---~~~~~~~~~~~ 329 (417)
T PF01276_consen 268 ---------------LSMHQTTSPSYPLMASLDVARAQMEEEEGRELLEEAIELAEEFRKKINRLN---DIWGFKVLGPE 329 (417)
T ss_dssp ---------------HHHHS-SS--HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHC---CT-SSEESS-S
T ss_pred ---------------HHHHcCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcC---CCceEecCCcc
Confidence 233456779999999999999988332246677888888999999983311 11356666654
Q ss_pred CCCcc------cC---------------CCCceEEEEeeCC------CCCccCHHHHHHHHhhCCCeecc
Q 010538 388 TSEVS------YH---------------DTGSMVSFNLKRP------DGSWFGYREVEKLASLSGIQLRT 430 (508)
Q Consensus 388 ~~~~~------~~---------------~~~~~v~~~~~~~------~~~~~~~~~l~~~L~~~gI~v~~ 430 (508)
.-... +. --+.=+++.+++. ....+....+.+.|+++||++--
T Consensus 330 ~v~~~~~~~~~~~~~whgf~~~~~~~~~lDP~K~ti~~pG~~~~g~~~~~Gi~g~~~~~~L~~~~I~~Ek 399 (417)
T PF01276_consen 330 DVGGEGCWDLDPGENWHGFEGLADDYYMLDPTKLTINTPGIDADGELSELGIPGYIVEKYLREHGIQVEK 399 (417)
T ss_dssp EECTCCGCB--TT-TTT--TT--TTSEEE-TTEEEEE-STBETTSSB-SS---HHHHHHHHHHTTEE-SE
T ss_pred ccCCccccccCccccchhchhcccCccccCCcEEEEEccCcCcCCcccccCCCHHHHHHHHHHcCCEEEe
Confidence 21000 00 0011234444331 12235556789999999999753
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-16 Score=167.26 Aligned_cols=297 Identities=11% Similarity=0.028 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHcCCC---C--CCceEEE--cCChHHH--HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEE
Q 010538 86 VRAAREQVLDYFNAS---M--KDYKCIF--TSGATAA--LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAF 156 (508)
Q Consensus 86 ~~~~r~~la~~~~~~---~--~~~~i~~--t~g~t~a--l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~ 156 (508)
..+.|+.+++++.-. . ++ +|.. +.+++.+ +...+..+ ..+|++|++++..|+.+....+ ..|++++
T Consensus 93 ~~~LR~aia~~~~~~~~~~~~~~-~i~~~~i~~g~Ga~~l~~~~~~~-~~pGd~Vlv~~P~y~~y~~~~~---~~g~~~~ 167 (423)
T PLN02397 93 LAEFNKLSAKLAYGADSPAIKEN-RVATVQCLSGTGSLRLGAEFLAR-FYPGSTIYIPNPTWGNHHNIFR---DAGVPVR 167 (423)
T ss_pred CHHHHHHHHHHHcCCCCchhhcC-eeEeeecccchHHHHHHHHHHHH-hCCCCEEEEeCCCchhHHHHHH---HcCCeEE
Confidence 556677777765321 1 11 3311 3333333 33333333 3589999999977777765544 4599999
Q ss_pred EEccC-Cc-cCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCcccc
Q 010538 157 AIDVE-EA-VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERIL 234 (508)
Q Consensus 157 ~v~~~-~~-~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~ 234 (508)
.+|+. .+ ..+ |++.++ +.+.+ ..++++++++++++||||.+++.+++.++++
T Consensus 168 ~v~l~~~~~~~~---------------d~~~l~--~~l~~---~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~------ 221 (423)
T PLN02397 168 TYRYYDPKTRGL---------------DFDGLL--EDLKA---APDGSFVLLHACAHNPTGVDPTPEQWEQISD------ 221 (423)
T ss_pred EeecccCcCCcc---------------CHHHHH--HHHHh---CCCCCEEEEeCCCCCCCCCCCCHHHHHHHHH------
Confidence 99873 22 223 566665 44421 1357899999999999999999998887776
Q ss_pred ccCCCCCCCeEEEEeccccCCCC------CCC---CCCCC-CcEEEEeccccccCCCc--ceEEE--E-echhHhhhccc
Q 010538 235 EISPFSKGRWMVLIDAAKGCVTQ------PPD---LSKYP-VDFVVMSFYKIFGYPTG--LGALI--M-RNDAAKLLKNT 299 (508)
Q Consensus 235 ~~~~~~~~g~~vivD~a~~~g~~------~~d---~~~~~-~D~~~~S~~K~~g~P~G--~G~l~--~-~~~~~~~l~~~ 299 (508)
+|+++|++||+|.++..-.. ... +...+ .-+++.|++|.|+ ++| +||++ + +++.++.+...
T Consensus 222 ---~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~-~~G~RvG~~v~~~~~~~~~~~~~~~ 297 (423)
T PLN02397 222 ---LIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMG-LYGERVGALSVVCKSADVAVRVKSQ 297 (423)
T ss_pred ---HHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCC-CccccceEEEEEeCCHHHHHHHHHH
Confidence 56669999999999753211 011 11111 2377889999999 778 89986 3 34433322211
Q ss_pred cccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHH---Hh--cChHHHHHHHHHHHHHHHHHHhcccC
Q 010538 300 YFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLI---NS--LTVPAICRHIASLGMYVRKVLLSLRH 374 (508)
Q Consensus 300 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~---~~--~g~~~i~~~~~~l~~~l~~~L~~l~~ 374 (508)
+..- .+....+ .+.....++..+++-- .+ ..++.+++++.+.++.+.+.|+++..
T Consensus 298 ~~~~-------------------~~~~~~~-~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~~ 357 (423)
T PLN02397 298 LKLI-------------------ARPMYSN-PPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEARGS 357 (423)
T ss_pred HHHH-------------------HhcccCC-CcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 0000 0001112 2222233333333210 01 01567788999999999999988610
Q ss_pred CCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhh
Q 010538 375 ENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNI 454 (508)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~ 454 (508)
+.++.+..|++ +.++|++++. ....++++++||.+..
T Consensus 358 ---~~~~~~~~p~g--------g~fl~~~l~~--------~~~~~Ll~~~~V~v~~------------------------ 394 (423)
T PLN02397 358 ---PGDWSHITKQI--------GMFSFTGLNK--------EQVDRMTKEYHIYMTR------------------------ 394 (423)
T ss_pred ---CCCCCcccCCc--------eEEEecCCCH--------HHHHHHHHhCCEEECC------------------------
Confidence 01244444443 6777776631 1255566788999852
Q ss_pred hcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 455 EAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
.+ |+++.. .+.++++++++.|++.++
T Consensus 395 -----------------~~--Ri~~~~-~~~~~i~~~~~~i~~~~~ 420 (423)
T PLN02397 395 -----------------DG--RISMAG-LSSKNVPYLADAIHAVVT 420 (423)
T ss_pred -----------------CC--eEEEee-CCHHHHHHHHHHHHHHHh
Confidence 23 999963 588999999999998875
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.7e-16 Score=160.61 Aligned_cols=323 Identities=14% Similarity=0.086 Sum_probs=201.8
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCceEEEcCChH-HHHHHHHhhcCCC--CCCeEEEecccccchHHHHHHHHhcCCeEEEE
Q 010538 82 TCDIVRAAREQVLDYFNASMKDYKCIFTSGAT-AALKLVGEAFPWS--HQSSYMYTMENHNSVLGIREYALSQGAAAFAI 158 (508)
Q Consensus 82 ~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t-~al~~~~~~l~~~--~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v 158 (508)
...+..++.+.+++++|++... ..++++|+| .++.+++.++... +++.||++...|.++...+.+ .|++++.|
T Consensus 103 ~~~l~~~~e~~~~~~~G~~~~~-~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~~---~G~~pv~V 178 (444)
T TIGR03531 103 LYKLTNKLVKDFLKLLGLRSIK-SAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAIST---AGFEPRVI 178 (444)
T ss_pred HHHHHHHHHHHHHHHcCCCCCC-EEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHHH---cCCeEEEe
Confidence 4567788899999999997431 467788888 6888888887532 578999999999888766665 49999999
Q ss_pred cc--CC-ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCC-CCCCccccCHHHHHHHHcCCcccc
Q 010538 159 DV--EE-AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSE-CNFSGSRFNLDLINIMKKNPERIL 234 (508)
Q Consensus 159 ~~--~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~-~n~tG~~~~i~~i~~l~~~~~~~~ 234 (508)
+. ++ ...+ |+++++ ++|.+. ++++.++++..+ ++..|...|+++|.++|++
T Consensus 179 d~~~d~~~~~i---------------D~e~Le--~aIt~~---~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k----- 233 (444)
T TIGR03531 179 ETVLDGDELTT---------------DVEDIE--RAIEEI---GPDNILCVLSTTSCFAPRSPDDIEEIAKICAN----- 233 (444)
T ss_pred eeeecCcCCCc---------------CHHHHH--HHHHhc---cCCCEEEEEEcCCcCCCcchhCHHHHHHHHHH-----
Confidence 85 22 3334 788998 666421 224455555444 3555689999999999998
Q ss_pred ccCCCCCCCeEEEEeccccCCCCCC-CC----CCC-CCcEEEEeccccccCCCcceEEEEe-chhHhhhccccccCceEE
Q 010538 235 EISPFSKGRWMVLIDAAKGCVTQPP-DL----SKY-PVDFVVMSFYKIFGYPTGLGALIMR-NDAAKLLKNTYFSGGTVA 307 (508)
Q Consensus 235 ~~~~~~~~g~~vivD~a~~~g~~~~-d~----~~~-~~D~~~~S~~K~~g~P~G~G~l~~~-~~~~~~l~~~~~g~~~~~ 307 (508)
+|+++|+|++|+.+.... .+ ... .+|++++|+||++..|.+.|+++.+ +++.+.+...+.+.
T Consensus 234 -------~gI~lIvDaAyg~~~~~~~~~~~~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~~~i~~~y~g~---- 302 (444)
T TIGR03531 234 -------YDIPHIVNNAYGLQSNKYMELINKAIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFIQEISKSYPGR---- 302 (444)
T ss_pred -------cCCEEEEECcCcCcChhhhhhhhccccccCCCeEEEeCccCCCCCCCEEEEEECCHHHHHHHHHhccCC----
Confidence 999999999998754321 11 112 3799999999988867665666674 45555554432211
Q ss_pred ecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCC
Q 010538 308 ASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTY 387 (508)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~ 387 (508)
..+.+.+ .++.++..+...|++++.++..++++++.+.|+++.. .-|.+++..+
T Consensus 303 ----------------------~~~s~~~-~~~~~ll~~G~~g~~~li~~~~~~a~~l~~~L~~l~~---~~~~~~~~~~ 356 (444)
T TIGR03531 303 ----------------------ASASPSL-DVLITLLSLGSKGYLELLKERKEMYKYLKELLQKLAE---RHGERLLDTP 356 (444)
T ss_pred ----------------------CCChHHH-HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhCcEeecCC
Confidence 0111222 2333444445567899999999999999999987521 1144555432
Q ss_pred CCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCe----eccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCC
Q 010538 388 TSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQ----LRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDD 463 (508)
Q Consensus 388 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~----v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 463 (508)
.- .--+.+.+....+. +...+...|-.++|. |.+|..-..+. . ....+|.+ |.
T Consensus 357 ~n-------~is~~~~~~~~~~~--~~~~~g~~l~~~~v~g~r~v~~~~~~~~~~-~---------~~~~~~~~--~~-- 413 (444)
T TIGR03531 357 EN-------PISSAMTLSTLKGK--DPTMLGSMLYSRRVTGPRVVTNGDSKTVGG-C---------EFKGYGSH--TS-- 413 (444)
T ss_pred CC-------ceeEEEeccccccc--CHHHHHHHHHhCCCCCceeecCCCceEECC-E---------Eeeccccc--cc--
Confidence 20 12233344332221 234577777666663 23332100000 0 00111111 11
Q ss_pred ccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 464 NDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 464 ~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
.+...++-++...-.|.+|||.+++.|.+.
T Consensus 414 -----~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~ 443 (444)
T TIGR03531 414 -----NYPCPYITAAAAIGMTKEDVDTFVSRLEKS 443 (444)
T ss_pred -----CCCchhHHHHHHhCCcHHHHHHHHHHHhhc
Confidence 123456777777778999999999887753
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.6e-15 Score=155.96 Aligned_cols=331 Identities=14% Similarity=0.080 Sum_probs=209.3
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+. +..+|.+++++.+.... +....... ......++.++++++++. + .+.|++++
T Consensus 35 ~g~~~lD~~s~~~~~~~Gh~~p~v~~a~~~~~~~--~~~~~~~~-----~~~~~~~l~~~l~~~~~~--~--~~~~~~SG 103 (401)
T TIGR01885 35 EGKRYLDFLSAYSAVNQGHCHPKIVKALTEQAQK--LTLSSRAF-----YNDVFGEFAEYVTKLFGY--D--KVLPMNTG 103 (401)
T ss_pred CCCEEEEcccCHhhccCCCCCHHHHHHHHHHHHh--cccccccc-----CCHHHHHHHHHHHhhcCC--C--EEEEeCcc
Confidence 56678887542 22378888887665432 11111111 234567788889999874 3 68999999
Q ss_pred HHHHHHHHhhcC---------CCCCCeEEEeccc-ccchHHHHHHHHh------cC---CeEEEEccCCccCcccccccc
Q 010538 113 TAALKLVGEAFP---------WSHQSSYMYTMEN-HNSVLGIREYALS------QG---AAAFAIDVEEAVDNDGLSESL 173 (508)
Q Consensus 113 t~al~~~~~~l~---------~~~g~~vl~~~~~-h~s~~~~~~~~~~------~G---~~v~~v~~~~~~~~~~l~~~~ 173 (508)
++|+..++.... ..++..|++.... |.++...+..... .+ ..+..+|..
T Consensus 104 s~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 171 (401)
T TIGR01885 104 AEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPYN------------ 171 (401)
T ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCCC------------
Confidence 999998887641 1234567766655 4444444332110 11 112222221
Q ss_pred ccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEe
Q 010538 174 VTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLID 249 (508)
Q Consensus 174 ~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD 249 (508)
|++.++ +.+++. .+++..|++..+.+++|.+.| +++|.++|++ +|+++++|
T Consensus 172 --------d~~~le--~~l~~~---~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~------------~~~lli~D 226 (401)
T TIGR01885 172 --------NLEALE--EALEDH---GPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTK------------HNVLLIAD 226 (401)
T ss_pred --------CHHHHH--HHHHhc---CCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHH------------cCCEEEEe
Confidence 355566 555321 356788889999999999998 7888888887 99999999
Q ss_pred cccc-CCC--CC--CCCCCCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCcc
Q 010538 250 AAKG-CVT--QP--PDLSKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 250 ~a~~-~g~--~~--~d~~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
++|. +|. .. .+...+..|++++| |.+++. .-+|+++.++++++.+.+...+
T Consensus 227 Ev~~g~g~~G~~~~~~~~~~~~di~~~g--K~l~~g~~~ig~v~~~~~i~~~~~~~~~~--------------------- 283 (401)
T TIGR01885 227 EIQTGLGRTGKLLCVDHENVKPDIVLLG--KALSGGVYPVSAVLADDDVMLTIKPGEHG--------------------- 283 (401)
T ss_pred chhhCCCccchhhHHhhcCCCCCEEEee--ccccCCCCCcEEEEEcHHHHhhccCCCCC---------------------
Confidence 9975 221 11 12233467888765 977732 1278899988887655432110
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEE
Q 010538 324 ELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFN 403 (508)
Q Consensus 324 ~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 403 (508)
.. .+.+....++..++++.+.+. .+.++..++.+++++.|+++.. .++..... .+.+..+.
T Consensus 284 --~t-~~~~p~~~~aa~a~L~~i~~~---~l~~~~~~~~~~~~~~L~~l~~-------~~~~~~~g------~g~~~~i~ 344 (401)
T TIGR01885 284 --ST-YGGNPLACAVAVAALEVLEEE---KLAENAEKLGEIFRDQLKKLPK-------PIITEVRG------RGLLNAIV 344 (401)
T ss_pred --CC-CCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhccC-------CceeEEee------cCeeEEEE
Confidence 01 122455566777788887653 4567888899999999998731 22211111 26676666
Q ss_pred eeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCC
Q 010538 404 LKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMS 483 (508)
Q Consensus 404 ~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 483 (508)
++.... .....++.+.|.++||.+.++ .++.+|+++++..
T Consensus 345 ~~~~~~-~~~~~~l~~~l~~~Gv~v~~~---------------------------------------~~~~lRi~p~l~~ 384 (401)
T TIGR01885 345 IDESKT-GRTAWDLCLKLKEKGLLAKPT---------------------------------------HGNIIRLAPPLVI 384 (401)
T ss_pred eccCcc-hhHHHHHHHHHHhCCEEEEec---------------------------------------CCCEEEEeCCccC
Confidence 644311 112346888888999998652 1468999999999
Q ss_pred CHHHHHHHHHhhhhhh
Q 010538 484 TFEDAKVNRCSSFDFV 499 (508)
Q Consensus 484 t~eev~~l~~~~~~~~ 499 (508)
|++||++++++|.+++
T Consensus 385 t~~~i~~~l~~l~~~l 400 (401)
T TIGR01885 385 TEEQLDEGLEIIKKVI 400 (401)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999998765
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-15 Score=155.65 Aligned_cols=244 Identities=16% Similarity=0.103 Sum_probs=163.6
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEEcc
Q 010538 82 TCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDV 160 (508)
Q Consensus 82 ~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~ 160 (508)
.......+++.++++-|+. .+++++++..|+..++.++ .++|++|+++..-|.......+ .+...|+++..++.
T Consensus 53 gnPt~~~le~~la~Le~g~----~a~~~~SGmaAi~~~l~~l-l~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~ 127 (386)
T PF01053_consen 53 GNPTVRALEQRLAALEGGE----DALLFSSGMAAISAALLAL-LKPGDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDP 127 (386)
T ss_dssp C-HHHHHHHHHHHHHHT-S----EEEEESSHHHHHHHHHHHH-S-TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEEST
T ss_pred ccccHHHHHHHHHHhhccc----ceeeccchHHHHHHHHHhh-cccCCceEecCCccCcchhhhhhhhcccCcEEEEeCc
Confidence 3455677889999999984 4677788888999888888 6889999999888877776655 46778999999876
Q ss_pred CCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCC
Q 010538 161 EEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFS 240 (508)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~ 240 (508)
. |+++++ +++ .++|++|++..+.||+..+.|+++|++++|+
T Consensus 128 ~--------------------d~~~l~--~~l------~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~----------- 168 (386)
T PF01053_consen 128 T--------------------DLEALE--AAL------RPNTKLVFLESPSNPTLEVPDLEAIAKLAKE----------- 168 (386)
T ss_dssp T--------------------SHHHHH--HHH------CTTEEEEEEESSBTTTTB---HHHHHHHHHH-----------
T ss_pred h--------------------hHHHHH--hhc------cccceEEEEEcCCCcccccccHHHHHHHHHH-----------
Confidence 3 356666 444 4689999999999999999999999999998
Q ss_pred CCC-eEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEec--hhHhhhccccccCceEEecccchhh
Q 010538 241 KGR-WMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRN--DAAKLLKNTYFSGGTVAASIADIDF 315 (508)
Q Consensus 241 ~~g-~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~--~~~~~l~~~~~g~~~~~~~~~~~~~ 315 (508)
+| ++++||.+.+.+.. .+.-+.|+|+++.|+.|.++|-.. .|++++++ +..+.++..
T Consensus 169 -~g~~~~vVDnT~atp~~-~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~---------------- 230 (386)
T PF01053_consen 169 -HGDILVVVDNTFATPYN-QNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREF---------------- 230 (386)
T ss_dssp -TTT-EEEEECTTTHTTT-C-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHH----------------
T ss_pred -hCCceEEeeccccceee-eccCcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcch----------------
Confidence 88 99999999866532 233345799999999999985532 57777665 444333321
Q ss_pred hhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEE-EecCCCCCccc-
Q 010538 316 VKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCT-IYGTYTSEVSY- 393 (508)
Q Consensus 316 ~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~-~~~~~~~~~~~- 393 (508)
.+....+.+....+.+...++ .+..+.++..+.+..+.+.|++.+ .++ ++-|.-.. .+
T Consensus 231 --------~~~~G~~~~p~da~ll~rgl~-----Tl~~R~~~~~~nA~~lA~~L~~hp------~V~~V~yPgl~s-~p~ 290 (386)
T PF01053_consen 231 --------RRLLGATLSPFDAWLLLRGLR-----TLPLRMERQNENAEALAEFLEEHP------KVKRVYYPGLPS-HPQ 290 (386)
T ss_dssp --------HHHHT-B--HHHHHHHHHHHT-----THHHHHHHHHHHHHHHHHHHHTST------TEEEEEETTSTT-STT
T ss_pred --------hhhcCccchHHHHHHHhcCCC-----cHHHHHHHHHHHHHHHHHHHHhCC------CCCeEEEccccc-ccc
Confidence 111112233333333333333 356677888888899999998874 454 55552110 00
Q ss_pred --------CCCCceEEEEeeCC
Q 010538 394 --------HDTGSMVSFNLKRP 407 (508)
Q Consensus 394 --------~~~~~~v~~~~~~~ 407 (508)
..-+++++|.+++.
T Consensus 291 ~~~~~~~~~g~ggl~sf~l~~~ 312 (386)
T PF01053_consen 291 HELAKRQMSGGGGLLSFELKGG 312 (386)
T ss_dssp HHHHHHHCSSCTSEEEEEESSH
T ss_pred eeeeeecccccCceeEEEeccc
Confidence 01257999999874
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-14 Score=148.91 Aligned_cols=331 Identities=12% Similarity=0.066 Sum_probs=196.0
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+. +..+|.+++++.+.+. .... ..... ......++.+.+++..+. + .++|++++
T Consensus 27 ~G~~~lD~~s~~~~~~lG~~~p~v~~a~~~~~~-~~~~-~~~~~-----~~~~~~~la~~l~~~~~~--~--~~~~~~sG 95 (377)
T PRK02936 27 NGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLD-DIWH-VSNLF-----TNSLQEEVASLLAENSAG--D--LVFFCNSG 95 (377)
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHH-hccc-ccccc-----CCHHHHHHHHHHHhcCCC--C--EEEEeCCc
Confidence 67788886443 4557888888766543 2111 11110 123344444555554432 4 69999999
Q ss_pred HHHHHHHHhhcC-CCCCCeEEEec-ccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCC
Q 010538 113 TAALKLVGEAFP-WSHQSSYMYTM-ENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGA 190 (508)
Q Consensus 113 t~al~~~~~~l~-~~~g~~vl~~~-~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~ 190 (508)
++|+..++.... ..+++.|++.+ ..|.+...+..........-...|....... .--.|++.++ +
T Consensus 96 ~~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~d~~~l~--~ 162 (377)
T PRK02936 96 AEANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTH-----------VPFNDIKALK--E 162 (377)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceE-----------eCCCCHHHHH--H
Confidence 999998887532 23445566664 4554555444322100000001111110000 0001467777 5
Q ss_pred CCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecccc-CCCC--CCCCC-
Q 010538 191 SFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKG-CVTQ--PPDLS- 262 (508)
Q Consensus 191 ~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~-~g~~--~~d~~- 262 (508)
.+ .+++++|++..+++++|...+ +++|.++|++ +|+++|+|++|. +|.. ++...
T Consensus 163 ~~------~~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~------------~~~~lI~DEv~~g~g~~g~~~~~~~ 224 (377)
T PRK02936 163 VM------NEEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKK------------FGALLIIDEVQTGIGRTGTLFAYEQ 224 (377)
T ss_pred hc------cCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHH------------cCCEEEEeccccCCCcCchhhHHHh
Confidence 44 456899999999998887753 6667777776 999999999986 2221 22211
Q ss_pred -CCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHH
Q 010538 263 -KYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASI 339 (508)
Q Consensus 263 -~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l 339 (508)
....|++ +++|.++ + | +|+++.++++.+.+.+... ......+...+++.
T Consensus 225 ~~~~~di~--t~sK~l~-~-G~~ig~v~~~~~~~~~~~~~~~------------------------~~t~~~~~~~~aaa 276 (377)
T PRK02936 225 FGLDPDIV--TVAKGLG-N-GIPVGAMIGKKELGTAFGPGSH------------------------GSTFGGNPLAMAAA 276 (377)
T ss_pred hCCCCcEE--EEccccc-C-CCccEEEEEcHHHHhhccCCCC------------------------CCCCCCCHHHHHHH
Confidence 2235655 5779888 5 4 7999998887665543210 01112455667777
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHH
Q 010538 340 RHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEK 419 (508)
Q Consensus 340 ~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~ 419 (508)
.++++.+.. +...+++.++.+++++.|++... +.+.+..+.+ .+.++++.+++. ...+.+
T Consensus 277 ~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~--~~~~~~~v~~---------~g~~~~i~~~~~------~~~~~~ 336 (377)
T PRK02936 277 KEVLQVIKQ---PSFLEEVQEKGEYFLQKLQEELE--HLECVKNIRG---------KGLMIGIECTEE------VAPVIE 336 (377)
T ss_pred HHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHh--hCCcEEeEee---------cceEEEEEecch------HHHHHH
Confidence 778876633 34456667777777777765310 0012221211 167888887642 234788
Q ss_pred HHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 420 LASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 420 ~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
.|.++||.+.++. .+.+|++++...|+++++++++.|.+.
T Consensus 337 ~l~~~gv~v~~~g---------------------------------------~~~lRi~p~~~~~~~~i~~~i~~l~~~ 376 (377)
T PRK02936 337 QLREEGLLVLSAG---------------------------------------PNVIRLLPPLVVTKEELDQAVYLLKKV 376 (377)
T ss_pred HHHHCCeEEecCC---------------------------------------CCEEEEECCcccCHHHHHHHHHHHHHh
Confidence 8899999986531 468999999999999999999998765
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-15 Score=165.53 Aligned_cols=239 Identities=10% Similarity=0.062 Sum_probs=171.4
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE 162 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~ 162 (508)
...+.++.+.+|+.+|++.. ..+++|+|.++..++.+. .++|+.|++....|-|++..+.+ .|+++++++...
T Consensus 204 ~G~I~eAq~~aA~~fgA~~t---~FlvNGST~gn~a~i~a~-~~~gd~Vlv~RN~HKSv~~al~L---~ga~Pvyl~P~~ 276 (755)
T PRK15029 204 TGAFGESEKYAARVFGADRS---WSVVVGTSGSNRTIMQAC-MTDNDVVVVDRNCHKSIEQGLIL---TGAKPVYMVPSR 276 (755)
T ss_pred CcHHHHHHHHHHHHhCCCcE---EEEeCChhHHHHHHHHHh-cCCCCEEEeecccHHHHHHHHHH---cCCeEEEecccc
Confidence 34578899999999999865 788899999999999998 68999999999999999876655 499999996543
Q ss_pred c--cCccccccccccccccccchhhhhcCCCCCCCC----CCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCcccccc
Q 010538 163 A--VDNDGLSESLVTSTKISLLPIQRRKGASFPERD----PAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEI 236 (508)
Q Consensus 163 ~--~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~----~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~ 236 (508)
+ +-.-.+ +.=.++++.++ ++|+++. ....+++.++++++ |..|.+.+++.|.++||+
T Consensus 277 ~~~Gi~~~i-------~~~~~~~e~i~--~~l~~~p~~k~~~~~~~~avvlt~P-TY~Gv~~di~~I~~~~h~------- 339 (755)
T PRK15029 277 NRYGIIGPI-------YPQEMQPETLQ--KKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEK------- 339 (755)
T ss_pred cccCCccCC-------CccccCHHHHH--HHHHhCchhhhccccCceEEEEECC-CCcceeeCHHHHHHHHHh-------
Confidence 1 111000 00012367777 6654321 11234458888885 668999999999999998
Q ss_pred CCCCCCCeEEEEeccccC--CC---CCC--CC-----CCCCCc-EEEEeccccccCCCcceEEEEech--hHh--hhccc
Q 010538 237 SPFSKGRWMVLIDAAKGC--VT---QPP--DL-----SKYPVD-FVVMSFYKIFGYPTGLGALIMRND--AAK--LLKNT 299 (508)
Q Consensus 237 ~~~~~~g~~vivD~a~~~--g~---~~~--d~-----~~~~~D-~~~~S~~K~~g~P~G~G~l~~~~~--~~~--~l~~~ 299 (508)
+|++++||+||+. +. .|. .+ ...++| +++-|.||++++.+..+++.++.. .+. +++..
T Consensus 340 -----~~~~llvDEAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~~~~id~~r~~~~ 414 (755)
T PRK15029 340 -----TSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQA 414 (755)
T ss_pred -----cCCeEEEECccccccccCccccccccccccccccCCCceEEEEchhhcccchhhhhhheeCCCccccCHHHHHHH
Confidence 8999999999875 11 111 11 125788 889999999887776788888554 111 11111
Q ss_pred cccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhccc
Q 010538 300 YFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLR 373 (508)
Q Consensus 300 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~ 373 (508)
-..+.+.+|+++-++++..|..++....-..+.++..+++..+++.+.+++
T Consensus 415 -----------------------l~~~qSTSPSY~LmASLD~ar~~m~~~~G~~l~~~~i~~~~~~r~~l~~~~ 465 (755)
T PRK15029 415 -----------------------YMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLY 465 (755)
T ss_pred -----------------------HHHHcCCCcHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 233456779999999999999988752235667778888888999987764
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-14 Score=137.16 Aligned_cols=318 Identities=13% Similarity=0.095 Sum_probs=197.8
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCC--CCC--CeEEEe-cccccchHHHHHHHHhcCCe-E
Q 010538 82 TCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPW--SHQ--SSYMYT-MENHNSVLGIREYALSQGAA-A 155 (508)
Q Consensus 82 ~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~--~~g--~~vl~~-~~~h~s~~~~~~~~~~~G~~-v 155 (508)
...+++++...+.+-+|++-.+..|.+|+|+..+.--+...+.- ..| ..|+.+ +.+|-++... |.+ =
T Consensus 76 ~~~li~ala~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~-------~l~~d 148 (417)
T COG3977 76 KAVLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADA-------GLEED 148 (417)
T ss_pred hhHHHHHHHHHHHHHhCCCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhcccccc-------ccCcc
Confidence 35567777788888888754433899999999998766665532 222 345544 5455443221 111 1
Q ss_pred EEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccc
Q 010538 156 FAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILE 235 (508)
Q Consensus 156 ~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~ 235 (508)
..|......++.. .-..++..|.+++. +++.|.+|+++-+.||||.++.-+++.++..
T Consensus 149 ~fVs~kP~iel~~-----~g~FKY~vDF~~l~----------i~e~~g~ic~SRPtNPTGNVlTdeE~~klda------- 206 (417)
T COG3977 149 LFVSAKPNIELLP-----AGQFKYHVDFEHLH----------IGESTGAICVSRPTNPTGNVLTDEELAKLDA------- 206 (417)
T ss_pred ceeeccCCccccc-----ccceeeccCHHHcc----------cccccceEEecCCCCCCCCcccHHHHHHHHH-------
Confidence 1122222111100 01245566777776 4678999999999999999999999999887
Q ss_pred cCCCCCCCeEEEEeccccCCCCCCCCCCC----C-CcEEEEeccccccCCCc-ceEEEEechhHhhhccccccCceEEec
Q 010538 236 ISPFSKGRWMVLIDAAKGCVTQPPDLSKY----P-VDFVVMSFYKIFGYPTG-LGALIMRNDAAKLLKNTYFSGGTVAAS 309 (508)
Q Consensus 236 ~~~~~~~g~~vivD~a~~~g~~~~d~~~~----~-~D~~~~S~~K~~g~P~G-~G~l~~~~~~~~~l~~~~~g~~~~~~~ 309 (508)
+|++||+++++|.+++++...+.+++. + --+.|+|.+|..- |+- ||+++++++.+..+...- + .++
T Consensus 207 --lA~~~giPliIDnAYg~PFP~iifsd~~~~w~~NiilC~SLSK~GL-PG~R~GIiIane~viqaitnmn--~-iis-- 278 (417)
T COG3977 207 --LARQHGIPLIIDNAYGVPFPGIIFSDATPLWNENIILCMSLSKLGL-PGSRCGIIIANEKVIQAITNMN--G-IIS-- 278 (417)
T ss_pred --HhhhcCCcEEEecccCCCCCceecccccccCCCCEEEEeehhhcCC-CCcceeEEEccHHHHHHHHhcc--c-eee--
Confidence 788899999999999987766666544 2 2478999999555 732 999999999877655431 0 000
Q ss_pred ccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChH-----HHHHHHHHHHHHHHHHHhcccCCCCCceEEEe
Q 010538 310 IADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVP-----AICRHIASLGMYVRKVLLSLRHENGADVCTIY 384 (508)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~-----~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~ 384 (508)
..+|.. +-+.+.+++.+..+. -|+--+++..+.....|++.- ....+.+.
T Consensus 279 ----------------Lap~~~------G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~l---p~~~~~iH 333 (417)
T COG3977 279 ----------------LAPGRM------GPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRYL---PEYRCLIH 333 (417)
T ss_pred ----------------ecCCCc------cHHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHhc---Cccceeee
Confidence 111111 111122222222222 222233344444444443321 01246665
Q ss_pred cCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCc
Q 010538 385 GTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDN 464 (508)
Q Consensus 385 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 464 (508)
.|.+ .-++|+.+++.+ +....+.++|+++|+.+-+|+.+.++..+ ++. |
T Consensus 334 kpEG--------AIFlWLWf~dLP---Itt~~LYq~LKa~Gvl~VPG~~FFpGl~~-----ewp---------H------ 382 (417)
T COG3977 334 KPEG--------AIFLWLWFKDLP---ITTEELYQRLKARGVLMVPGHYFFPGLDK-----EWP---------H------ 382 (417)
T ss_pred cCCc--------ceeehhhhccCC---CCHHHHHHHHHhCeEEEecccccCCCCCC-----CCC---------C------
Confidence 5544 577777777754 44567999999999999999998886532 111 1
Q ss_pred cccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 465 DIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 465 ~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
.+.++|+|+.. +.++++.=++.+.+-|+
T Consensus 383 ------~hqC~Rmn~~~--~~~~ie~Gva~lae~ve 410 (417)
T COG3977 383 ------THQCMRMNYVP--EPEKIEKGVAILAEEVE 410 (417)
T ss_pred ------ccceEEEecCC--CHHHHHHHHHHHHHHHH
Confidence 36799999875 78888888888776554
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-14 Score=153.77 Aligned_cols=336 Identities=13% Similarity=0.098 Sum_probs=202.9
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+. |--+|.+++++.+++.. . ......+ ..+...++.+.++++++. + .+.|++++
T Consensus 73 dG~~ylD~~sg~~~~~~Gh~~p~v~~ai~~ql~~-~-~~~~~~~-----~~~~~~~la~~L~~~~~~--~--~~~f~~SG 141 (474)
T PLN02624 73 EGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEK-L-TLSSRAF-----YNDKFPEFAEYLTSMFGY--D--MVLPMNTG 141 (474)
T ss_pred CCCEEEEcccchhcccCCCCCHHHHHHHHHHHHh-c-CCccccc-----CCHHHHHHHHHHHhhcCC--C--eEEEeCCh
Confidence 67889997432 33488999888765532 1 1111111 123445677778888763 4 68999999
Q ss_pred HHHHHHHHhhcCC--------CCCC-eEEEecc-cccchHHHHHHHHh----cC-----CeEEEEccCCccCcccccccc
Q 010538 113 TAALKLVGEAFPW--------SHQS-SYMYTME-NHNSVLGIREYALS----QG-----AAAFAIDVEEAVDNDGLSESL 173 (508)
Q Consensus 113 t~al~~~~~~l~~--------~~g~-~vl~~~~-~h~s~~~~~~~~~~----~G-----~~v~~v~~~~~~~~~~l~~~~ 173 (508)
++|+..++..... .++. .|+.... -|......+..... .+ ..+..+|.+
T Consensus 142 seA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~------------ 209 (474)
T PLN02624 142 AEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDFG------------ 209 (474)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCCC------------
Confidence 9999887753321 1123 4555443 23222222221100 00 011222221
Q ss_pred ccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEe
Q 010538 174 VTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLID 249 (508)
Q Consensus 174 ~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD 249 (508)
|++.++ +.++. ..+++++|++..+++++|.+.| +++|.++|++ ||+++|+|
T Consensus 210 --------d~~~l~--~~l~~---~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~------------~gillI~D 264 (474)
T PLN02624 210 --------DLDALE--KIFEE---DGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSK------------HNVLMIAD 264 (474)
T ss_pred --------CHHHHH--HHHHh---CCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHH------------cCCEEEEe
Confidence 345556 55532 2357899999999999999999 7788888887 99999999
Q ss_pred cccc-CCCC----CCCCCCCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCcc
Q 010538 250 AAKG-CVTQ----PPDLSKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 250 ~a~~-~g~~----~~d~~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
++|. +|.. ..+......|++++| |.+|+. -.+|+++++++++..+.+...+
T Consensus 265 Ev~tG~GrtG~~~a~~~~~i~pDiv~ls--K~lggG~~pigav~~~~~i~~~~~~~~~~--------------------- 321 (474)
T PLN02624 265 EIQTGLARTGKMLACDWEEVRPDVVILG--KALGGGVIPVSAVLADKDVMLCIKPGEHG--------------------- 321 (474)
T ss_pred ccccCcCcCcchhhHHhcCCCCCEEEec--ccccCCCCcceeeeecHHHHhHhccCCcC---------------------
Confidence 9997 3321 122233457888865 977743 1379999988776555433111
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCce-EEEecCCCCCcccCCCCceEEE
Q 010538 324 ELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADV-CTIYGTYTSEVSYHDTGSMVSF 402 (508)
Q Consensus 324 ~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~ 402 (508)
...+.+....++..++++.+.+. .+.++..++.+++++.|+++.. ..+. +.-+.+ .+.++.+
T Consensus 322 ---~T~~g~pl~~aaa~aaLe~l~~~---~l~~~~~~~~~~l~~~L~~l~~--~~~~~i~~vrg---------~G~~~~i 384 (474)
T PLN02624 322 ---STFGGNPLASAVAMAALQVVQDE---KLAERSAKLGQELRDQLQKIQK--QFPKLIKEVRG---------RGLLNAV 384 (474)
T ss_pred ---CCCCCCHHHHHHHHHHHHHHHhc---hHHHHHHHHHHHHHHHHHHHHH--hCCCceEEEEe---------eEEEEEE
Confidence 01123455666777788877653 4556777777888877766410 0011 211111 1556666
Q ss_pred EeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC
Q 010538 403 NLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM 482 (508)
Q Consensus 403 ~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 482 (508)
.+...........++.+.|.++||.+.++. .+.+||++++.
T Consensus 385 ~l~~~~~~~~~a~~~~~~L~e~GV~v~p~~---------------------------------------~~~lR~~p~l~ 425 (474)
T PLN02624 385 VLNSPKLGPVSAYDVCLKLKERGLLAKPTH---------------------------------------DTIIRLAPPLS 425 (474)
T ss_pred EecCCCcChHHHHHHHHHHHhCCeEEecCC---------------------------------------CCEEEEECCcc
Confidence 664321000112357788899999987631 46899999999
Q ss_pred CCHHHHHHHHHhhhhhhhh
Q 010538 483 STFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 483 ~t~eev~~l~~~~~~~~~~ 501 (508)
+|++||+.+++.|.++++.
T Consensus 426 ~t~e~id~~l~~L~~~l~~ 444 (474)
T PLN02624 426 ISEDELQECSKALSDVLEH 444 (474)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999988754
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.2e-15 Score=156.51 Aligned_cols=347 Identities=12% Similarity=0.083 Sum_probs=207.0
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+ .|--+|.+.+++.++. .... ....... ......++.+++++.+....+ .+.|++++
T Consensus 40 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~-~~~~-~~~~~~~----~~~~~~~la~~l~~~~p~~~~--~v~f~~sG 111 (423)
T PRK05964 40 DGRELIDAISSWWVATHGHNHPYIDQAIREQL-DRLD-HVIFAGF----THEPAERLAQRLVALTPGGLD--HVFFSDSG 111 (423)
T ss_pred CCCEEEEcchhHHhccCCCCCHHHHHHHHHHH-hhCC-Ccccccc----CCHHHHHHHHHHHHhCCCCCC--EEEEeCCc
Confidence 7888999743 3555788888876544 3211 1110000 123344566777777653345 79999999
Q ss_pred HHHHHHHHhhcC-C------CCCCeEEEecccccch-HHHHHHHHhcC---------CeEEEEccCCccCcccccccccc
Q 010538 113 TAALKLVGEAFP-W------SHQSSYMYTMENHNSV-LGIREYALSQG---------AAAFAIDVEEAVDNDGLSESLVT 175 (508)
Q Consensus 113 t~al~~~~~~l~-~------~~g~~vl~~~~~h~s~-~~~~~~~~~~G---------~~v~~v~~~~~~~~~~l~~~~~~ 175 (508)
++|+..++.... . .+..+||.....|.+. ..+........ ..+..+|.......
T Consensus 112 seA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--------- 182 (423)
T PRK05964 112 SVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYE--------- 182 (423)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhH---------
Confidence 999988776431 1 2345677766555443 33332211000 01122222110000
Q ss_pred ccccccchhhhhcCCCCCCCCCCCCCceEEEEeC-CCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEec
Q 010538 176 STKISLLPIQRRKGASFPERDPAGDAYNLFAFPS-ECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDA 250 (508)
Q Consensus 176 ~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~-~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~ 250 (508)
..+++.++ +.+.+ ..+++..|++.. ++...|.+.+ +++|.++|++ ||+++|+|+
T Consensus 183 ----~~~~~~l~--~~l~~---~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~------------~g~llI~DE 241 (423)
T PRK05964 183 ----QATLDALE--ALLEK---HAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDR------------HGVLLIFDE 241 (423)
T ss_pred ----HHHHHHHH--HHHHh---CCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHH------------cCCEEEEec
Confidence 01255565 55532 135677777766 5788888875 5566666665 999999999
Q ss_pred ccc-CCCCC----CCCCCCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccc
Q 010538 251 AKG-CVTQP----PDLSKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEE 324 (508)
Q Consensus 251 a~~-~g~~~----~d~~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 324 (508)
+|. +|..- .+.....+|++++| |++++. ..+|+++.++++.+.+.+.. .+. .
T Consensus 242 v~tg~gr~G~~~a~~~~~v~pDi~~~~--K~l~gG~~p~~av~~~~~i~~~~~~~~-~~~-------------------~ 299 (423)
T PRK05964 242 IATGFGRTGTLFACEQAGVSPDIMCLS--KGLTGGYLPLAATLCTAEIFEAFYSDD-RAK-------------------A 299 (423)
T ss_pred hhhCCCcCcchhHHHhcCCCCCeeeee--hhhhcCcccceEEEEcHHHHHhhhcCC-ccc-------------------c
Confidence 985 33211 12222357887665 988744 24889999988876553210 000 0
Q ss_pred cccCCC--CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEE
Q 010538 325 LFEDGT--ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSF 402 (508)
Q Consensus 325 ~~~~gt--~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 402 (508)
.+..+| .|..++++..++++.+.+ +.+.+++.++.+++++.|+++.. .+.+ .+.. ..+.++.+
T Consensus 300 ~~~~~T~~~np~~~aaa~a~l~~l~~---~~~~~~~~~~g~~l~~~l~~l~~---~~~i---~~vr------g~Gl~~~i 364 (423)
T PRK05964 300 FMHSPSYTANPLACAAANASLDLFED---EPVLERVAALSAGLAEGLEPFRD---LPGV---ADVR------VLGAIGAV 364 (423)
T ss_pred cccCCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHhhcc---CCCe---EEee------cccEEEEE
Confidence 011233 466677777778887765 34678889999999998887621 1222 1111 12677788
Q ss_pred EeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC
Q 010538 403 NLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM 482 (508)
Q Consensus 403 ~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 482 (508)
.+.+.+... ....+.+.|.++||.+.+. .+.+|+++++.
T Consensus 365 ~l~~~~~~~-~~~~l~~~l~~~Gv~v~~~----------------------------------------~~~lR~~p~l~ 403 (423)
T PRK05964 365 ELDRPVLER-DGPALRAFALERGVLLRPL----------------------------------------GNTIYLMPPYI 403 (423)
T ss_pred EeccCcchh-HHHHHHHHHHHCCeEEEec----------------------------------------CCEEEEeCCcc
Confidence 885432100 1235788888999998652 35799999999
Q ss_pred CCHHHHHHHHHhhhhhhhh
Q 010538 483 STFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 483 ~t~eev~~l~~~~~~~~~~ 501 (508)
+|++|||++++++.+.++.
T Consensus 404 ~t~edId~~v~~l~~al~~ 422 (423)
T PRK05964 404 ITAEELDRITDAIVEVADE 422 (423)
T ss_pred cCHHHHHHHHHHHHHHHhh
Confidence 9999999999999988754
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.7e-15 Score=147.91 Aligned_cols=317 Identities=15% Similarity=0.116 Sum_probs=197.4
Q ss_pred HHHHHHHHHHHcC----CCC-CCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEcc
Q 010538 86 VRAAREQVLDYFN----ASM-KDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDV 160 (508)
Q Consensus 86 ~~~~r~~la~~~~----~~~-~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~ 160 (508)
...+...+.++.+ .++ ++-+|++|+|.|.|+..+++.+ ...|+.|++....+++.+ ..++..|++++.|++
T Consensus 102 ~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~-~N~gd~vlie~~ty~~AL---~s~~a~gv~~ipv~m 177 (472)
T KOG0634|consen 102 IPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTL-INRGDHVLIEEYTYPSAL---QSMEALGVKIIPVKM 177 (472)
T ss_pred cHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHh-hcCCCceEEecccchHHH---HhccccCceEEeccc
Confidence 4444555555444 332 2236999999999999999999 677899998876666554 445556999999999
Q ss_pred CCccCccccccccccccccccchhhhhcCCCCCCCCCC---CCCce-EEEEeCCCCCCccccCHHHHHHHHcCCcccccc
Q 010538 161 EEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPA---GDAYN-LFAFPSECNFSGSRFNLDLINIMKKNPERILEI 236 (508)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~---~~~t~-lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~ 236 (508)
+.++.. ++.++ +.+.+...- .++++ +.+++..+||||..++.+.-.++.+
T Consensus 178 d~~Gi~----------------pE~l~--~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~-------- 231 (472)
T KOG0634|consen 178 DQDGID----------------PESLE--EILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQ-------- 231 (472)
T ss_pred cCCCCC----------------HHHHH--HHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHH--------
Confidence 877754 66666 444332221 24444 5578999999999999987776666
Q ss_pred CCCCCCCeEEEEeccccCCCCC-----------------------CCCCCCCCc---EEEEeccccccCCCc--ceEEEE
Q 010538 237 SPFSKGRWMVLIDAAKGCVTQP-----------------------PDLSKYPVD---FVVMSFYKIFGYPTG--LGALIM 288 (508)
Q Consensus 237 ~~~~~~g~~vivD~a~~~g~~~-----------------------~d~~~~~~D---~~~~S~~K~~g~P~G--~G~l~~ 288 (508)
||++|+++||.|..+.+-..+ .++..++.| +=..|++|.++ | | +||+-+
T Consensus 232 -LArKyDfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiia-P-GlRlG~it~ 308 (472)
T KOG0634|consen 232 -LARKYDFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIA-P-GLRLGWITG 308 (472)
T ss_pred -HHHHcCEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhc-C-cceeEEeec
Confidence 666799999999987641111 112222333 44569999999 9 5 899999
Q ss_pred echhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcC----hHHHHHHHHHHHHH
Q 010538 289 RNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLT----VPAICRHIASLGMY 364 (508)
Q Consensus 289 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g----~~~i~~~~~~l~~~ 364 (508)
++.++++.-.. ... . ..+ |+.....-+.+.++.+.+.| +..++..+...++.
T Consensus 309 ~~~~l~ril~~---ae~-~-------------------t~~-pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~ 364 (472)
T KOG0634|consen 309 NSLFLKRILDL---AEV-A-------------------TSG-PSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNA 364 (472)
T ss_pred CHHHHHHHhhh---cce-e-------------------ecC-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98876543221 111 0 001 22222222333333333322 45666777777888
Q ss_pred HHHHHhcccCCCCCce-EEEecCCCCCcccCCCCceEEEEeeCCC---CCccC--HHHHHHHHhhCCCeeccCCCCCchH
Q 010538 365 VRKVLLSLRHENGADV-CTIYGTYTSEVSYHDTGSMVSFNLKRPD---GSWFG--YREVEKLASLSGIQLRTGCFCNPGA 438 (508)
Q Consensus 365 l~~~L~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~--~~~l~~~L~~~gI~v~~g~~~~~~~ 438 (508)
+...|.+.. +.. +++..|.+ +.++|++++-.. ...++ ...+...+.++||.+.+|..+....
T Consensus 365 ~l~Al~kyl----p~~~~~~~~P~a--------GmFiwv~i~~~~~~~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p 432 (472)
T KOG0634|consen 365 LLSALDKYL----PKSVCEYHPPKA--------GMFIWVEIPYINFDTKKSINQIEEIIFIKAVKNGVKLVCGSWFMVDP 432 (472)
T ss_pred HHHHHHHhC----CCCeeEEecCCc--------ceEEEEEecccccccccchHHHHHHHHHHHHHCCeEEecCceeEEcC
Confidence 888886642 123 45554443 899999996110 01122 1346677789999999997655421
Q ss_pred HHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 439 CAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 439 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
. . ....-.+|+|++++. .|++++.++++...++
T Consensus 433 ~----------------------~------s~~kiffRls~a~a~-~e~l~~g~~rf~~~ik 465 (472)
T KOG0634|consen 433 E----------------------S------SWSKIFFRLSIAFAE-PEKLDEGIERFGSVIK 465 (472)
T ss_pred c----------------------c------CCCcceEEEEeecCC-HHHHHHHHHHHHHHHH
Confidence 0 0 001248999999654 4477776666655443
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-14 Score=142.11 Aligned_cols=162 Identities=12% Similarity=0.050 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEEccCCcc
Q 010538 86 VRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDVEEAV 164 (508)
Q Consensus 86 ~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~~~~~ 164 (508)
...+++++|.+=|.-.. +.++++..|+..++..+ .++||+|+.+..-|.+...... .+++.|+++++|+.+
T Consensus 64 ~~vlE~RiAaLEGG~aa----~a~aSG~AA~~~ai~~l-a~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~~--- 135 (426)
T COG2873 64 TDVLEERIAALEGGVAA----LAVASGQAAITYAILNL-AGAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDPD--- 135 (426)
T ss_pred HHHHHHHHHHhhcchhh----hhhccchHHHHHHHHHh-ccCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeCCC---
Confidence 45567889988887655 55677888999999998 7899999999888877666655 458899999999764
Q ss_pred CccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCe
Q 010538 165 DNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRW 244 (508)
Q Consensus 165 ~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~ 244 (508)
|++.++ ++ ++++||+|++....||.+.+.|++.|.++||+ +|+
T Consensus 136 -----------------d~~~~~--~a------I~~nTkavf~EtigNP~~~v~Die~ia~iAh~------------~gv 178 (426)
T COG2873 136 -----------------DPENFE--AA------IDENTKAVFAETIGNPGLDVLDIEAIAEIAHR------------HGV 178 (426)
T ss_pred -----------------CHHHHH--HH------hCcccceEEEEeccCCCccccCHHHHHHHHHH------------cCC
Confidence 467778 44 47899999999999999999999999999998 999
Q ss_pred EEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHh
Q 010538 245 MVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAK 294 (508)
Q Consensus 245 ~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~ 294 (508)
+++||.+-+.+.. +..-+.++|+++-|..||.||- | +|.+++.....+
T Consensus 179 pliVDNT~atpyl-~rP~~hGADIVvHS~TK~igGh-Gt~iGG~iVD~G~FD 228 (426)
T COG2873 179 PLIVDNTFATPYL-CRPIEHGADIVVHSATKYIGGH-GTAIGGVIVDGGKFD 228 (426)
T ss_pred cEEEecCCCccee-cchhhcCCCEEEEeecccccCC-ccccceEEEeCCccc
Confidence 9999998876543 2222347999999999999944 4 788887655443
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-14 Score=147.89 Aligned_cols=315 Identities=13% Similarity=0.045 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEEccCCcc
Q 010538 86 VRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDVEEAV 164 (508)
Q Consensus 86 ~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~~~~~ 164 (508)
...+.+.++.+-|.+.. +.++++..|+..++.++ +++||+|+++..-|.+...... .+++.|+++..++.....
T Consensus 65 ~~~lE~~~a~LEg~~~~----~afsSGmaAI~~~~l~l-l~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~ 139 (396)
T COG0626 65 RDALEEALAELEGGEDA----FAFSSGMAAISTALLAL-LKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDE 139 (396)
T ss_pred HHHHHHHHHHhhCCCcE----EEecCcHHHHHHHHHHh-cCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChH
Confidence 45667888888877644 55666677999988888 7889999999887777666654 567789999988754322
Q ss_pred CccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCe
Q 010538 165 DNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRW 244 (508)
Q Consensus 165 ~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~ 244 (508)
.++ +++ ..++|++|++..+.||+-.+.|+++|.+++|+ +|+
T Consensus 140 --------------------~~~--~~~-----~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~------------~g~ 180 (396)
T COG0626 140 --------------------ALE--AAI-----KEPNTKLVFLETPSNPLLEVPDIPAIARLAKA------------YGA 180 (396)
T ss_pred --------------------HHH--HHh-----cccCceEEEEeCCCCcccccccHHHHHHHHHh------------cCC
Confidence 223 222 12689999999999999999999999999998 899
Q ss_pred EEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhc-cccccCceEEecccchhhhhhccC
Q 010538 245 MVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLK-NTYFSGGTVAASIADIDFVKRRQG 321 (508)
Q Consensus 245 ~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~-~~~~g~~~~~~~~~~~~~~~~~~~ 321 (508)
+++||.+.+-+..-- .-+.|+|+++-|..|.++|-.- .|++..+++.+.... ..
T Consensus 181 ~vvVDNTfatP~~q~-PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~---------------------- 237 (396)
T COG0626 181 LVVVDNTFATPVLQR-PLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFA---------------------- 237 (396)
T ss_pred EEEEECCcccccccC-hhhcCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHH----------------------
Confidence 999999987654322 2234799999999999884322 464554555543211 11
Q ss_pred ccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceE-EEecCCCC---------Cc
Q 010538 322 VEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVC-TIYGTYTS---------EV 391 (508)
Q Consensus 322 ~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~-~~~~~~~~---------~~ 391 (508)
.++...+.+.....+.+...++. +..+.++..+.+..+.+.|++.+ .+ +++-|.-+ +.
T Consensus 238 -~~~~~G~~l~p~dA~l~lRGlkT-----L~~Rm~~~~~nA~~IA~~L~~~p------~V~~V~yPgl~shp~he~~~rq 305 (396)
T COG0626 238 -QRANTGAVLSPFDAWLLLRGLRT-----LALRMERHNENALKIAEFLADHP------KVKKVYYPGLPSHPGHELAKRQ 305 (396)
T ss_pred -HHhhcCCCCCHHHHHHHHhccch-----HHHHHHHHHHHHHHHHHHHhcCC------CeEEEECCCCCCCCcHHHHHHh
Confidence 11111223333334444445444 34455666666777777777753 34 45555310 00
Q ss_pred ccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCC
Q 010538 392 SYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKP 471 (508)
Q Consensus 392 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 471 (508)
- ...+++++|.+.+. +. ..++.+.|+-..+..+.|..-+.-. +++ ...|+.+ ..+.+.--+..
T Consensus 306 ~-~g~gg~~Sf~l~~~--~~--~~~f~~~L~l~~~a~SlGgveSLi~-~pa-~~th~~~----------~~~~r~~~Gi~ 368 (396)
T COG0626 306 M-TGYGGLFSFELKNE--EA--AKKFLDSLKLFKLAESLGGVESLIS-HPA-TMTHASI----------PLEERAKAGIT 368 (396)
T ss_pred c-CCCceEEEEEeCCh--HH--HHHHHHhCCccEEeccCCCcccccc-ccc-ccCcccC----------CHhHHHhcCCC
Confidence 0 01389999999874 11 1224444444444445543211110 000 0011111 11111112234
Q ss_pred CceEEEecCCCCCHHHHHHHHHhhh
Q 010538 472 TGAIRVSFGYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 472 ~~~iRis~~~~~t~eev~~l~~~~~ 496 (508)
++.||+|++.-+.++=++-+-++++
T Consensus 369 ~~LvRlSVGlEd~eDLi~Dl~~Al~ 393 (396)
T COG0626 369 DGLVRLSVGLEDVEDLIADLEQALA 393 (396)
T ss_pred CCeEEEEecCCCHHHHHHHHHHHHH
Confidence 8999999998555554444444443
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.3e-14 Score=146.56 Aligned_cols=330 Identities=12% Similarity=0.093 Sum_probs=195.0
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+. +. +|.+++++.+.+ .....++.. .....++.+++.+...+.. .++|++|+
T Consensus 27 dg~~~lD~~s~~~~~~lG~-~p~v~~a~~~~~-~~~~~~~~~----------~~~~~~~~la~~l~~~~~~-~~~~~~SG 93 (375)
T PRK04260 27 DGKKYLDFSSGIGVTNLGF-HPQVQQALQKQA-GLIWHSPNL----------YLNSLQEEVAQKLIGDKDY-LAFFCNSG 93 (375)
T ss_pred CCCEEEECCCCcccccCCC-CHHHHHHHHHHH-HhcCcccCc----------cCCHHHHHHHHHHhcCcCC-EEEEcCcc
Confidence 67778888653 55 788888876654 322222211 1233456666655443331 46899999
Q ss_pred HHHHHHHHhhcC-CCCCCeEEEe-cccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCC
Q 010538 113 TAALKLVGEAFP-WSHQSSYMYT-MENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGA 190 (508)
Q Consensus 113 t~al~~~~~~l~-~~~g~~vl~~-~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~ 190 (508)
|+|+..++.... ..++..|++. ...|.+........ |.....-+... .+..+ ....-.|++.++ +
T Consensus 94 seA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~---~~~~~~~~~~~--~~~~~------~~~~~~dl~~l~--~ 160 (375)
T PRK04260 94 AEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSAT---GQDKIKDGFGD--GVPHF------SYAIFNDLNSVK--A 160 (375)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhcc---CCcccCCCCCC--CCCCe------EEeCCCCHHHHH--H
Confidence 999997776642 2345566665 55576665554332 11100000000 00000 000001567777 5
Q ss_pred CCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecccc-CCCC--CCC--C
Q 010538 191 SFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKG-CVTQ--PPD--L 261 (508)
Q Consensus 191 ~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~-~g~~--~~d--~ 261 (508)
.+ .+++.+|++..+++++|.+.+ ++++.++|++ +|+++++|++|. +|.. +.. .
T Consensus 161 ~l------~~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~------------~~~~~i~De~~~g~g~~g~~~~~~~ 222 (375)
T PRK04260 161 LV------NKNTAAVMLELVQGESGVLPADKDFVKALADYCQE------------TGILLIVDEVQTGMGRTGKLYAFEH 222 (375)
T ss_pred hc------CCCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHH------------cCCEEEEechhhCCCcccchhhhHh
Confidence 44 346789999999999999877 6888888887 999999999985 2221 111 2
Q ss_pred CCCCCcEEEEeccccccCCC-cceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHH
Q 010538 262 SKYPVDFVVMSFYKIFGYPT-GLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIR 340 (508)
Q Consensus 262 ~~~~~D~~~~S~~K~~g~P~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~ 340 (508)
.....|++ |++|.++ |+ -+|++++++++.+.+...... ...+.+....++..
T Consensus 223 ~~~~pdi~--t~sK~l~-~G~~ig~~~~~~~~~~~~~~~~~~------------------------~t~~~~~~~~~aa~ 275 (375)
T PRK04260 223 YGIEPDIF--TLAKGLA-NGVPVGAMLAKSSLGGAFGYGSHG------------------------STFGGNKLSMAAAS 275 (375)
T ss_pred hCCCCCEE--Eeccccc-CCcceEEEEEcHHHHhhcCCCCCC------------------------CCCCcCHHHHHHHH
Confidence 22346755 6789888 52 189999998876554422100 01122344455555
Q ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHH
Q 010538 341 HGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKL 420 (508)
Q Consensus 341 ~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 420 (508)
++++.+.. +.+.++.++..+++++.+.++... .+.+..+.. .+.++++.+.. + ...+.+.
T Consensus 276 a~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~---------~g~~~~~~~~~-~-----~~~~~~~ 335 (375)
T PRK04260 276 ATLDIMLT---AGFLEQALENGNYLQEQLQKALQD--KETVTTVRG---------LGYMIGIETTA-D-----LSQLVEA 335 (375)
T ss_pred HHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHhh--CCCeeEEec---------cceEEEEEecC-c-----HHHHHHH
Confidence 66665543 345556666666666666543110 011221111 27888888732 1 2347889
Q ss_pred HhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 421 ASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 421 L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
+.++||.+.+. ..+.+|++++...|.+|++++++.+++.
T Consensus 336 l~~~Gi~v~~~---------------------------------------~~~~lR~~~~~~~t~~~i~~~l~~l~~~ 374 (375)
T PRK04260 336 ARDKGLIVLTA---------------------------------------GTNVIRLLPPLTLTKEEIEQGIAILSEV 374 (375)
T ss_pred HHhCCCEEecC---------------------------------------CCCEEEEcCCCccCHHHHHHHHHHHHHh
Confidence 99999998652 1467999999999999999999998764
|
|
| >KOG2142 consensus Molybdenum cofactor sulfurase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-16 Score=165.28 Aligned_cols=408 Identities=31% Similarity=0.416 Sum_probs=286.4
Q ss_pred HHHhhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEc
Q 010538 30 RATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFT 109 (508)
Q Consensus 30 r~~~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t 109 (508)
|+.+|-.+ . |+|+++.+.+.+...+............||++....+....+.+.++|-.+..+++..+.+|+++||
T Consensus 14 r~~e~s~~-~---yldhag~tl~sesq~~g~~~~sq~~e~~nphs~~~ts~~l~~~v~Q~r~ril~~f~tta~dy~v~lp 89 (728)
T KOG2142|consen 14 RDREFSRL-A---YLDHAGRTLFSESQLEGVAFQSQSSENANPHSHLGTSRSLARLVAQVRLRILALFNTTAFDYEVSLP 89 (728)
T ss_pred hhHHHHHH-H---HHHhhhhhhhhhcccchhhhhhhccccCCCcccccchHHHHHHHHHHHHHHHHHhccccccccchhH
Confidence 44488876 2 9999999998888777644333334456788766667778889999999999999998888999999
Q ss_pred CChHHHHHHHHhhcCCCC-CCeE---EEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhh
Q 010538 110 SGATAALKLVGEAFPWSH-QSSY---MYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQ 185 (508)
Q Consensus 110 ~g~t~al~~~~~~l~~~~-g~~v---l~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~ 185 (508)
. .|+|+.+++.++++-. +..| =.+...|.+...........|+-+..+ .. ...+.+- +. .++..
T Consensus 90 ~-~t~al~~vae~fp~~s~tekid~lrs~~y~hls~s~~~~~~~~~~~gl~sy-~q-~~~i~~~-----~~----~sls~ 157 (728)
T KOG2142|consen 90 A-LTEALKLVAEAFPFYSQTEKIDNLRSDEYGHLSSSGHLMRLDYSGIGLFSY-SQ-TNEISDS-----EE----FSLSE 157 (728)
T ss_pred H-HHHHHHHHHHhCccccccccccchhhhhhcccccccceeeeeeeccceEEe-ee-eeecccc-----cc----ccccc
Confidence 9 9999999999997532 3333 223333333332111111223333333 00 0111000 00 00111
Q ss_pred hhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCC
Q 010538 186 RRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYP 265 (508)
Q Consensus 186 l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~ 265 (508)
.. +......++..+...|..|..+-...+-.+.- ..+.++++|++.-..+-|++.....
T Consensus 158 ~~---------~~ls~~~L~~g~a~~nfeg~kik~ri~d~L~i------------pe~~y~lldtaSrvSaf~Ldaesy~ 216 (728)
T KOG2142|consen 158 SE---------ANLSEHSLFGGAAQSNFEGDKIKLRIMDRLNI------------PESEYVLLDTASRVSAFPLDAESYP 216 (728)
T ss_pred cc---------cCcccchhcccchhcccccceeeeeeeccccc------------CCceEEEEEeecccccccchHhhCC
Confidence 11 11234477777888888888744433333331 2589999999999999999999999
Q ss_pred CcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHH
Q 010538 266 VDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNL 345 (508)
Q Consensus 266 ~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~ 345 (508)
.|+... ++|+|+.|. |.+.+.++..+.. |+++.+....-..++.......++++.|+.++-.++.+...+..
T Consensus 217 f~~~~~-lltiFgyet--gAvlv~~r~A~~~-----Ggkt~sa~f~wp~~~l~s~~lkkr~e~gk~~~kd~a~gl~vFp~ 288 (728)
T KOG2142|consen 217 FDFNPK-LLTIFGYET--GAVLVMNRSAELK-----GGKTASAEFSWPMLYLLSEKLKKRFEDGKLRFKDIAQGLFVFPT 288 (728)
T ss_pred Ccccch-heeecCCCc--hhhHHHhhhhHhh-----cCccceeecccchHHHHHHHHHHHHhhccccccchhhheeccch
Confidence 999999 999999997 5555555544322 55554433333334444556688999999999888887777776
Q ss_pred HHhc--ChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhh
Q 010538 346 INSL--TVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASL 423 (508)
Q Consensus 346 ~~~~--g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~ 423 (508)
+... ++..+..+...+.+++.-.|.+..+ |++.+++++...-+ |...++++.|.+...++..+....+.+.. -
T Consensus 289 ~sRvtG~~ysy~wmt~al~~~whvlLda~~l--G~kdmd~yglS~f~--Pdfqg~sf~fv~g~d~psgfGcl~VkKs~-i 363 (728)
T KOG2142|consen 289 QSRVTGGMYSYSWMTLALANNWHVLLDALAL--GPKDMDSYGLSLFQ--PDFQGPSFYFVFGRDDPSGFGCLEVKKSA-I 363 (728)
T ss_pred HhhhcccchhHHHHHHHHhhhHHHHHhhhcc--CcchHhhhhhhccC--ccceeeeEEEEeccCCCCceeeeeeehhh-h
Confidence 5543 6899999999999999999988754 67777777655432 45678999999987666666665566655 6
Q ss_pred CCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhh
Q 010538 424 SGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFD 497 (508)
Q Consensus 424 ~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~ 497 (508)
.||..++|++|+.+.++.++|+..++.-..+..+|.|+|-+ + .. +| ++..|.+++..+..++.+
T Consensus 364 ~~l~lrtGcfcn~Gack~~pgl~~~~~~~~~~~g~~cgD~d----g--~~---~s-~~~~~~~~~~a~~~~~v~ 427 (728)
T KOG2142|consen 364 SGLELRTGCFCNIGACKIYPGLYLEMSQKGLSAGKGCGDND----G--QP---VS-GYMQTPADVGAYLSAQVS 427 (728)
T ss_pred hceeccCCCCCCCcceeecccccHHHHHHHhhhccccccCC----C--Cc---cc-ccccchhhhhHHHHHhhh
Confidence 89999999999999999999999999999999999999862 1 22 77 899999999999887664
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.7e-15 Score=160.55 Aligned_cols=253 Identities=15% Similarity=0.111 Sum_probs=171.8
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHH-HHHHHhcCCeEEEEccC
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGI-REYALSQGAAAFAIDVE 161 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~-~~~~~~~G~~v~~v~~~ 161 (508)
.....++.+.+|+.+|++.. ..+++|+|.++..++.++ ..+|+.||+....|-|+... +.+ .|+++++++..
T Consensus 173 eG~i~eAq~~AA~~fgAd~t---yFlvNGTS~gn~a~i~a~-~~~Gd~VLvdRN~HKSv~hgaLiL---sGa~PVYl~P~ 245 (720)
T PRK13578 173 EGAAKDAQKHAAKVFNADKT---YFVLNGTSASNKVVTNAL-LTPGDLVLFDRNNHKSNHHGALIQ---AGATPVYLETA 245 (720)
T ss_pred ChHHHHHHHHHHHHhCCCce---EEEeCChhHHHHHHHHHh-cCCCCEEEeecccHHHHHHHHHHH---cCCeEEEeecc
Confidence 34578899999999999865 788899999999999998 68999999999999998764 444 49999998754
Q ss_pred Cc--cCccccccccccccccccchhhhhcCCCCCCCCC----CCCCceEEEEeCCCCCCccccCHHHHHHH-HcCCcccc
Q 010538 162 EA--VDNDGLSESLVTSTKISLLPIQRRKGASFPERDP----AGDAYNLFAFPSECNFSGSRFNLDLINIM-KKNPERIL 234 (508)
Q Consensus 162 ~~--~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~----~~~~t~lv~~~~~~n~tG~~~~i~~i~~l-~~~~~~~~ 234 (508)
.+ +-+-. ++.=.++.+.++ ++|++..+ ..+..++++++++ |..|.+.+++.|.++ +|.
T Consensus 246 ~n~~Gi~g~-------I~~~~~~~~~i~--~~i~~~~p~~~~~~~p~k~vvit~p-TYdG~~ydi~~I~~~~~h~----- 310 (720)
T PRK13578 246 RNPFGFIGG-------IDAHCFDEEYLR--EQIREVAPERADEARPFRLAVIQLG-TYDGTIYNARQVVDKIGHL----- 310 (720)
T ss_pred ccccCCcCC-------CChHHccHHHHH--HHHHhcCccccccccCceEEEEECC-CCcceeecHHHHHHHhhcc-----
Confidence 31 11110 111112345566 55543211 1122588888874 678999999999998 575
Q ss_pred ccCCCCCCCeEEEEeccccC--CCCCC--CC----CCCCCc----EEEEeccccccCCCcceEEEEechhHhhhcccccc
Q 010538 235 EISPFSKGRWMVLIDAAKGC--VTQPP--DL----SKYPVD----FVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFS 302 (508)
Q Consensus 235 ~~~~~~~~g~~vivD~a~~~--g~~~~--d~----~~~~~D----~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g 302 (508)
++ ++++|.||+. +..|. ++ -+.++| +++-|.||++++.+..+++.+++..++.-+..+ .
T Consensus 311 -------~~-~llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~alTQaS~LHvk~~~i~g~~~~v-~ 381 (720)
T PRK13578 311 -------CD-YILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIKGQARYC-P 381 (720)
T ss_pred -------CC-cEEEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcchhhhhHhhhhcCCcccccccccC-C
Confidence 67 9999999874 22231 11 244788 999999999887766788887665432000000 0
Q ss_pred CceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH-hcccCCCCCceE
Q 010538 303 GGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVL-LSLRHENGADVC 381 (508)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L-~~l~~~~~~~~~ 381 (508)
...+. ..-..+.+.+|+++-++++..+..++....-+.+.+++.+++..+++.+ +.. +++
T Consensus 382 ---------~~r~~----~al~m~qSTSPsY~LmASLDva~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~------~~~ 442 (720)
T PRK13578 382 ---------HKRLN----NAFMLHASTSPFYPLFAALDVNAKMHEGESGRRLWMECVKLGIEARKLILARC------KLI 442 (720)
T ss_pred ---------HHHHH----HHHHHHcCCChHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHhC------CCe
Confidence 00000 0022344567889999999998888775334667788888888999988 555 356
Q ss_pred EEec
Q 010538 382 TIYG 385 (508)
Q Consensus 382 ~~~~ 385 (508)
+++.
T Consensus 443 ~~~~ 446 (720)
T PRK13578 443 RPFI 446 (720)
T ss_pred eecc
Confidence 6664
|
|
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.3e-15 Score=150.38 Aligned_cols=274 Identities=13% Similarity=0.057 Sum_probs=199.2
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCC---C-C---CCeEEEecccccchHHHHHHHHhcCCe
Q 010538 82 TCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPW---S-H---QSSYMYTMENHNSVLGIREYALSQGAA 154 (508)
Q Consensus 82 ~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~---~-~---g~~vl~~~~~h~s~~~~~~~~~~~G~~ 154 (508)
...+..++...++.+++.+++. .-..|.|+|+++.+....... + . ..+++++..-|. .|.++++.++++
T Consensus 118 ~~~~e~~~Vnm~~~L~~~~~~~-~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~---a~eK~a~yf~v~ 193 (491)
T KOG1383|consen 118 VRKLEAECVNMIANLFNAPSDS-CGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHA---AFEKAARYFEVE 193 (491)
T ss_pred hHHHHHHHHHHHHHHhcCCccc-cCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHH---HHHHHHhhEEEE
Confidence 4566778999999999998762 235678888885554433211 1 1 134555553333 345566678999
Q ss_pred EEEEccCC-ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccc
Q 010538 155 AFAIDVEE-AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERI 233 (508)
Q Consensus 155 v~~v~~~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~ 233 (508)
++.||++. +..+ |+..+. . .++++|.+++.+.+++|+|.+-|++++.++.-+
T Consensus 194 l~~V~~~~~~~~~---------------D~~k~~--~------~i~eNti~lv~~~~~~p~G~~e~ve~l~~l~~e---- 246 (491)
T KOG1383|consen 194 LREVPLDEGDYRV---------------DPGKVV--R------MIDENTIMLVGSLPNFPTGEIEDVEKLADLLLE---- 246 (491)
T ss_pred EEeeeccccceEe---------------cHHHHH--H------HhccceEEEEEEcCCCCccchhhHHHHHHHHHH----
Confidence 99999984 4455 688888 4 446789999999999999999999999999886
Q ss_pred cccCCCCCCCeEEEEeccccCCCC--------CCCCCCCCCcEEEEeccc-cccCCCcceEEEEechhHhhh----cccc
Q 010538 234 LEISPFSKGRWMVLIDAAKGCVTQ--------PPDLSKYPVDFVVMSFYK-IFGYPTGLGALIMRNDAAKLL----KNTY 300 (508)
Q Consensus 234 ~~~~~~~~~g~~vivD~a~~~g~~--------~~d~~~~~~D~~~~S~~K-~~g~P~G~G~l~~~~~~~~~l----~~~~ 300 (508)
.+++++++|++.+.-.. ++|+...++..+.+++|| .|. |.|+|+++.+++-...- ..-+
T Consensus 247 -------~w~ipiHvDa~~GgFi~p~~~~~~~~fdFr~p~V~Sisa~~HKYGl~-~~G~~~vl~r~k~~~~~q~~~~~~w 318 (491)
T KOG1383|consen 247 -------IWDIPIHVDACLGGFINPAGYLNEEEFDFRVPGVTSISADGHKYGLA-PAGSSWVLYRNKELLPHQLFFHTDW 318 (491)
T ss_pred -------HhCCceeecccCccccccccccCccccccCCCCceeEeeccceeeee-ecCcEEEEEcccccccceEEEeccc
Confidence 28999999999764333 567777788899999999 555 99999988876543111 1222
Q ss_pred ccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCce
Q 010538 301 FSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADV 380 (508)
Q Consensus 301 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~ 380 (508)
.||-. +...-.|+.+...++++++++-.+...|+.+..+++.+.+..|+++++++. +
T Consensus 319 ~Gg~y-----------------~s~TlngSR~g~~va~~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~------~ 375 (491)
T KOG1383|consen 319 LGGIY-----------------ASPTLNGSRPGSQVAAQWAALMSLGEEGYRENTQNIVETARKLREGIENIK------G 375 (491)
T ss_pred cCccc-----------------cCcccccCCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhccc------c
Confidence 33321 222234666677889999998888899999999999999999999999984 7
Q ss_pred EEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeecc
Q 010538 381 CTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRT 430 (508)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~ 430 (508)
+.+++++. ++|...+... ++..++...|++.|..+-.
T Consensus 376 i~i~gkp~-----------vs~~~~~s~~--~~i~elsd~l~~~GW~lna 412 (491)
T KOG1383|consen 376 IKIVGKPL-----------VSFILFGSND--VNIFELSDLLRKKGWILNA 412 (491)
T ss_pred ceecCCCc-----------EEEEEccCCc--cchhhhhHHHHhcCcCccc
Confidence 99998643 4444433222 4556799999999998754
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.67 E-value=6e-14 Score=144.85 Aligned_cols=354 Identities=14% Similarity=0.108 Sum_probs=210.4
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKL 118 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~ 118 (508)
.+-+|+|--+-+.. .....+.+.... .++. .|.. ..-+.+.++.+++++|.+ .+++|+++|.|+++
T Consensus 36 ~~~v~iDLltDsgT-~aMs~~q~a~~~---~GDe--~yag----~~s~~~lE~~va~~~G~~----~av~v~sGT~Al~l 101 (450)
T TIGR02618 36 SEDVYIDLLTDSGT-NAMSDKQWAGLM---MGDE--AYAG----SRNFYHLERTVRELYGFK----YVVPTHQGRGAENL 101 (450)
T ss_pred cCceEEEcccCCCc-HHHHHHHHHHhh---hcch--hhcC----CCcHHHHHHHHHHHHCCC----eEEEcCCHHHHHHH
Confidence 67889988765543 222222122221 1111 1111 222567789999999987 47999999999998
Q ss_pred HHhhcCCCCCCeEEEecccccchHHHHHH-HHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCC
Q 010538 119 VGEAFPWSHQSSYMYTMENHNSVLGIREY-ALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP 197 (508)
Q Consensus 119 ~~~~l~~~~g~~vl~~~~~h~s~~~~~~~-~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~ 197 (508)
+. .+..++|++| +...| ...... .+..|+.+.-++.+...+.. +.-+..-..|+++++ ++|.+.
T Consensus 102 l~-~l~l~pGDeV--psn~~---f~Tt~ahIe~~Gav~vDi~~dea~~~~-----~~~p~~GniD~~~Le--~aI~~~-- 166 (450)
T TIGR02618 102 LS-QIAIKPGDYV--PGNMY---FTTTRYHQEKNGATFVDIIIDEAHDAQ-----LNIPFKGNVDLKKLQ--KLIDEV-- 166 (450)
T ss_pred HH-HhCCCCcCEE--CCcee---HHHHHHHHHhCCeEEEeeecccccccc-----cCCCCCCCcCHHHHH--HHhccc--
Confidence 75 4447889977 33223 222222 35567766666443100000 000111233799999 777532
Q ss_pred CCCCceEEEEeCCCCCC-ccccCH---HHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC-----------CCCCCC
Q 010538 198 AGDAYNLFAFPSECNFS-GSRFNL---DLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT-----------QPPDLS 262 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~t-G~~~~i---~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~-----------~~~d~~ 262 (508)
..+++++|.+...+|.. |..+|+ +++.++|++ +|++||.|+++.++- ...++.
T Consensus 167 ~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~------------~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ 234 (450)
T TIGR02618 167 GADKIPYICLAVTVNLAGGQPVSMANMREVRELCEA------------HGIKVFYDATRCVENAYFIKEREQGYEDKSIA 234 (450)
T ss_pred cCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHH------------cCCEEEEEccchhhChhhhhcccccccCCCHH
Confidence 12345667666666655 898765 566666665 999999999998742 223331
Q ss_pred ----C--CCCcEEEEeccccccCCCcceEEEEe-chhHhhhccc--cccCceEEecccchhhhhhccCccccccCCCCCh
Q 010538 263 ----K--YPVDFVVMSFYKIFGYPTGLGALIMR-NDAAKLLKNT--YFSGGTVAASIADIDFVKRRQGVEELFEDGTASF 333 (508)
Q Consensus 263 ----~--~~~D~~~~S~~K~~g~P~G~G~l~~~-~~~~~~l~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~ 333 (508)
+ ..+|.+++|++|.+++|.| |++..+ +++.++++.. .++|. ...|....
T Consensus 235 ei~~e~~~~aD~~~~S~~Kd~~~~~G-G~l~~~d~~l~~k~r~~~~~~eG~---------------------~tyGgla~ 292 (450)
T TIGR02618 235 EILKEMMSYADGCTMSGKKDCLVNIG-GFLCMNDDEMFQSAKELVVVFEGM---------------------PSYGGLAG 292 (450)
T ss_pred HHHHHHhccCcEEEEeeccCCCCCCc-eEEEeCCHHHHHHHHHHhhhcCCc---------------------cccCchhh
Confidence 1 1589999999998887877 777754 5566665544 22221 12244444
Q ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEe----eCCCC
Q 010538 334 LSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNL----KRPDG 409 (508)
Q Consensus 334 ~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~ 409 (508)
..+.++..+++..-+ ....++....+++|.+.|.+. |+.++.|.+ ++.|.++. ++.+.
T Consensus 293 r~~~ala~gL~e~~~---~~y~~~r~~~a~~La~~L~~~-------Gvpv~~p~g--------gh~V~vda~~~lph~~~ 354 (450)
T TIGR02618 293 RDMEAMAIGIREAVD---YEYIEHRVKQVRYLGDKLKAA-------GVPIVEPVG--------GHAVFLDARRFLPHIPQ 354 (450)
T ss_pred hhHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHC-------CCcccCCCC--------cceEEEEhHHhCCCCCh
Confidence 456666666664332 244566666799999999887 788876654 78888874 45555
Q ss_pred CccCHHHHHHHH-hhCCCeec-cCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCC--C--CceEEEecC-CC
Q 010538 410 SWFGYREVEKLA-SLSGIQLR-TGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGK--P--TGAIRVSFG-YM 482 (508)
Q Consensus 410 ~~~~~~~l~~~L-~~~gI~v~-~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~--~--~~~iRis~~-~~ 482 (508)
.++....+...| .+.||.-. -|+...... + .+++ . -..+|+++. --
T Consensus 355 ~~~p~~al~~~ly~~~gir~~e~g~~~~~~~------------------------~---~~~~~~~~~~el~rlaiprr~ 407 (450)
T TIGR02618 355 DQFPAQSLAASIYVETGVRSMERGIVSAGRN------------------------N---VTGEHHRPKLELVRLTIPRRV 407 (450)
T ss_pred hhChHHHHHHHHHHHhCccEEeecceecccC------------------------C---CCCcccCCccceeeecccccc
Confidence 555555555444 67788743 232211110 0 0111 1 257999977 33
Q ss_pred CCHHHHHHHHHhhhhhhh
Q 010538 483 STFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 483 ~t~eev~~l~~~~~~~~~ 500 (508)
-|.+.+|.+++.+..+.+
T Consensus 408 yt~~h~~~v~~~~~~~~~ 425 (450)
T TIGR02618 408 YTYAHMDVVADGIIKLYK 425 (450)
T ss_pred ccHhHHHHHHHHHHHHHh
Confidence 488999999999887754
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.8e-14 Score=145.63 Aligned_cols=327 Identities=13% Similarity=0.103 Sum_probs=196.9
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..+ .|.-+|.+.+++.+.+. .... .... . ......++.++++++.+. + .+.|++++
T Consensus 38 dG~~~iD~~~~~~~~~lGh~~p~v~~a~~~~~~-~~~~-~~~~--~---~~~~~~~l~~~l~~~~~~--~--~~~~~~sG 106 (403)
T PRK05093 38 QGKEYIDFAGGIAVTALGHCHPALVKALKEQGE-KLWH-ISNV--F---TNEPALRLAKKLIDATFA--E--RVFFANSG 106 (403)
T ss_pred CCCEEEEcCcCHHhccCCCCCHHHHHHHHHHHH-hcCc-ccCc--c---CCHHHHHHHHHHHhhCCC--C--EEEEeCch
Confidence 6778888754 45568888888766543 2111 1111 1 112234677778887653 4 68999999
Q ss_pred HHHHHHHHhhcC-C------CCCCeEEEe-cccccchHHHHHHHHh----cC-----CeEEEEccCCccCcccccccccc
Q 010538 113 TAALKLVGEAFP-W------SHQSSYMYT-MENHNSVLGIREYALS----QG-----AAAFAIDVEEAVDNDGLSESLVT 175 (508)
Q Consensus 113 t~al~~~~~~l~-~------~~g~~vl~~-~~~h~s~~~~~~~~~~----~G-----~~v~~v~~~~~~~~~~l~~~~~~ 175 (508)
++|+..++.... . .....|+.. ..-|.+...+...... .| ..+..+|.
T Consensus 107 seA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 171 (403)
T PRK05093 107 AEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPF--------------- 171 (403)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCC---------------
Confidence 999988876431 1 123445544 4456555443332100 00 11112221
Q ss_pred ccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCcccc--C---HHHHHHHHcCCccccccCCCCCCCeEEEEec
Q 010538 176 STKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRF--N---LDLINIMKKNPERILEISPFSKGRWMVLIDA 250 (508)
Q Consensus 176 ~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~--~---i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~ 250 (508)
.|++.++ +.+ .+++++|++..+ +++|.+. | +++|.++|++ ||+++|+|+
T Consensus 172 -----~d~~~l~--~~l------~~~~aaiiiep~-~~~gg~~~~~~~~l~~l~~l~~~------------~g~~lI~DE 225 (403)
T PRK05093 172 -----NDLAAVK--AVI------DDHTCAVVVEPI-QGEGGVIPATPEFLQGLRELCDQ------------HNALLIFDE 225 (403)
T ss_pred -----CCHHHHH--HHh------cCCeEEEEEecc-cCCCCCccCCHHHHHHHHHHHHH------------cCCEEEEec
Confidence 1466777 444 356888988854 5555443 3 5666666665 999999999
Q ss_pred ccc-CCCC--CC--CCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCcc
Q 010538 251 AKG-CVTQ--PP--DLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 251 a~~-~g~~--~~--d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
+|+ +|.. +. .......|+. |++|.++ | | +|++++++++.+.+.+...+
T Consensus 226 v~~g~g~~g~~~~~~~~~~~pdi~--s~sK~l~-~-G~rig~vv~~~~i~~~l~~~~~~--------------------- 280 (403)
T PRK05093 226 VQTGMGRTGDLFAYMHYGVTPDIL--TSAKALG-G-GFPIGAMLTTAEIASHFKVGTHG--------------------- 280 (403)
T ss_pred hhhCCCCCccchhhhhcCCCCCEE--Eeccccc-C-CcceEEEEEcHHHHhhcCCCCCC---------------------
Confidence 987 2221 11 1222346654 6679888 6 6 89999999887766543111
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEE
Q 010538 324 ELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFN 403 (508)
Q Consensus 324 ~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 403 (508)
... ..+.+..++..++++.+.. .+..++++++.+++.+.|+++.. ...++.... ..+.++++.
T Consensus 281 --~t~-~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~-----~~~~~~~~~------~~G~~~~~~ 343 (403)
T PRK05093 281 --STY-GGNPLACAVAEAVFDIINT---PEVLEGVKARRQRFVDGLQKINQ-----KYGVFSEIR------GMGLLIGAE 343 (403)
T ss_pred --CCC-CCCHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHh-----hCCCeEeEe------eCceEEEEE
Confidence 011 2344456666667877643 35668888999999999987621 111111111 115677777
Q ss_pred eeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCC
Q 010538 404 LKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMS 483 (508)
Q Consensus 404 ~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 483 (508)
++.... -...++...|.++||.+.++ ..+.+|+++++..
T Consensus 344 l~~~~~--~~~~~~~~~l~~~Gv~v~~~---------------------------------------g~~~lRl~~~~~~ 382 (403)
T PRK05093 344 LKPQYK--GRARDFLNAAAEEGVMVLVA---------------------------------------GPDVLRFAPSLVI 382 (403)
T ss_pred ecCcch--hHHHHHHHHHHHCCeEEecC---------------------------------------CCCEEEEeCCCCC
Confidence 753210 01235777888889998752 1468999999999
Q ss_pred CHHHHHHHHHhhhhhhh
Q 010538 484 TFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 484 t~eev~~l~~~~~~~~~ 500 (508)
|.++++.+++.|.++++
T Consensus 383 ~~~~i~~~~~~l~~~l~ 399 (403)
T PRK05093 383 EEADIDEGLARFEKAVA 399 (403)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999988775
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-13 Score=143.75 Aligned_cols=329 Identities=13% Similarity=0.068 Sum_probs=200.7
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+ .|.-+|.+++++.++.. ..+. ....+ ......++.++++++++. + .+.|++++
T Consensus 33 dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~-~~~~-~~~~~-----~~~~~~~la~~L~~~~~~--~--~~~f~~SG 101 (397)
T TIGR03246 33 QGKEYIDFAGGIAVNALGHAHPELVKALIEQAD-KLWH-IGNGY-----TNEPVLRLAKKLVDATFA--D--KVFFCNSG 101 (397)
T ss_pred CCCEEEECCcCHhhccCCCCCHHHHHHHHHHHH-hccc-ccCcc-----CCHHHHHHHHHHHhhCCC--C--EEEEeCCc
Confidence 6778888754 45558888888766543 2111 11111 123456678888888754 4 79999999
Q ss_pred HHHHHHHHhhcC-C------CCCCeEEEe-cccccchHHHHHHHHhc---------CCeEEEEccCCccCcccccccccc
Q 010538 113 TAALKLVGEAFP-W------SHQSSYMYT-MENHNSVLGIREYALSQ---------GAAAFAIDVEEAVDNDGLSESLVT 175 (508)
Q Consensus 113 t~al~~~~~~l~-~------~~g~~vl~~-~~~h~s~~~~~~~~~~~---------G~~v~~v~~~~~~~~~~l~~~~~~ 175 (508)
++|+..++.... . .+...|+.. ...|.+........... ...+..+|.
T Consensus 102 seA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 166 (397)
T TIGR03246 102 AEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPY--------------- 166 (397)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCC---------------
Confidence 999998887652 1 123455554 45565555443321100 001111221
Q ss_pred ccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCcccc-C---HHHHHHHHcCCccccccCCCCCCCeEEEEecc
Q 010538 176 STKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRF-N---LDLINIMKKNPERILEISPFSKGRWMVLIDAA 251 (508)
Q Consensus 176 ~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~-~---i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a 251 (508)
.|++.++ +.+ .+++++|++..++++.|.+. | +++|.++|++ +|+++|+|++
T Consensus 167 -----~d~~~l~--~~l------~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~------------~g~llI~DEv 221 (397)
T TIGR03246 167 -----NDLAAAK--ALI------SDKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDR------------HNALLIFDEV 221 (397)
T ss_pred -----CCHHHHH--HHh------ccCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHH------------cCCEEEEech
Confidence 1467777 554 35689999998888878665 4 5555555665 9999999999
Q ss_pred cc-CCCCC--C--CCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccc
Q 010538 252 KG-CVTQP--P--DLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEE 324 (508)
Q Consensus 252 ~~-~g~~~--~--d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 324 (508)
|. +|... . ......+|+++ +.|.++ . | +|++++++++.+.+.....+
T Consensus 222 ~tG~Gr~G~~~a~~~~gv~pDi~t--~~K~lg-g-G~pigav~~~~~i~~~~~~~~~~---------------------- 275 (397)
T TIGR03246 222 QTGVGRTGELYAYMHYGVTPDILT--SAKALG-G-GFPIGAMLTTTEIAAHLKVGTHG---------------------- 275 (397)
T ss_pred hhcCCccccchhhhhcCCCCCEEE--eehhhh-C-CcceeEEEEcHHHHHhccCCCcC----------------------
Confidence 84 22111 1 11122467774 569776 2 4 79999998887655432110
Q ss_pred cccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEe
Q 010538 325 LFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNL 404 (508)
Q Consensus 325 ~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 404 (508)
... +.+....++..++++.+.+ +++.++++++.+++.+.|+++.. ...++..... .+.++.+.+
T Consensus 276 -~t~-~~~p~~~aaa~a~l~~~~~---~~l~~~~~~~~~~l~~~L~~l~~-----~~~~~~~vrg------~G~~~~i~~ 339 (397)
T TIGR03246 276 -TTY-GGNPLACAVAGKVLDLVNT---PELLAGVKQRHDLFVDGLEKINA-----RYNVFSEIRG------KGLLIGAVL 339 (397)
T ss_pred -CCC-CCCHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHh-----cCCCeEeeec------CceEEEEEE
Confidence 011 1344556666677877643 46788899999999999987621 1112221111 155666665
Q ss_pred eCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCC
Q 010538 405 KRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMST 484 (508)
Q Consensus 405 ~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t 484 (508)
..... -....+.+.|.++||.+.+. ..+.+|+++++.+|
T Consensus 340 ~~~~~--~~~~~~~~~l~~~Gv~~~~~---------------------------------------g~~~lR~~p~~~~t 378 (397)
T TIGR03246 340 TEAYQ--GKAKQFVNAAAEEGVIALIA---------------------------------------GPNVVRFAPSLVIS 378 (397)
T ss_pred cCchh--hHHHHHHHHHHHCCeEEeec---------------------------------------CCCEEEEeCCCCCC
Confidence 33110 01235778888999998651 14689999999999
Q ss_pred HHHHHHHHHhhhhhhhh
Q 010538 485 FEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 485 ~eev~~l~~~~~~~~~~ 501 (508)
++|++++++++.+.++.
T Consensus 379 ~~~i~~~~~~l~~~l~~ 395 (397)
T TIGR03246 379 DDDIDEGLARFERAIEQ 395 (397)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999887653
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.9e-14 Score=154.00 Aligned_cols=322 Identities=13% Similarity=0.047 Sum_probs=211.2
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE 162 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~ 162 (508)
.....++.+.+|+.+|++.. ..+++|+|.++..++.++ ..+|+.||+....|-|+...+.+ .|+++++++...
T Consensus 194 ~G~i~eAe~~AA~~fgAd~t---yfvvNGTS~~n~av~~a~-~~~Gd~VLvdRN~HKSv~haLil---sga~PVYl~P~r 266 (714)
T PRK15400 194 SGPHKEAEEYIARVFNADRS---YMVTNGTSTANKIVGMYS-APAGSTVLIDRNCHKSLTHLMMM---SDVTPIYFRPTR 266 (714)
T ss_pred ChHHHHHHHHHHHHhCCCcE---EEEeCchHHHHHHHHHHh-cCCCCEEEeecccHHHHHHHHHH---cCCeEEEecccc
Confidence 34578899999999999865 788899999999999998 68999999999999998875544 599999987653
Q ss_pred c--cCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCC
Q 010538 163 A--VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFS 240 (508)
Q Consensus 163 ~--~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~ 240 (508)
+ +-+-. ++.=.++++.++ +.|++.. ...++..++++++ |..|.+.+++.|.++++.
T Consensus 267 n~~Gi~g~-------I~~~~~~~e~i~--~~i~~~p-~ak~p~~~vit~p-TYdG~~yd~~~I~~~~~~----------- 324 (714)
T PRK15400 267 NAYGILGG-------IPQSEFQHATIA--KRVKETP-NATWPVHAVITNS-TYDGLLYNTDFIKKTLDV----------- 324 (714)
T ss_pred cccCCccC-------CCccccCHHHHH--HHHHhCc-cccCccEEEEECC-CCccEecCHHHHHHHhCC-----------
Confidence 1 11111 111122467777 6665431 1122336777775 778999999999999997
Q ss_pred CCCeEEEEeccccC--CCCCC--CCCC--CCC---c--EEEEeccccccCCCcceEEEEechhH-hhhccccccCceEEe
Q 010538 241 KGRWMVLIDAAKGC--VTQPP--DLSK--YPV---D--FVVMSFYKIFGYPTGLGALIMRNDAA-KLLKNTYFSGGTVAA 308 (508)
Q Consensus 241 ~~g~~vivD~a~~~--g~~~~--d~~~--~~~---D--~~~~S~~K~~g~P~G~G~l~~~~~~~-~~l~~~~~g~~~~~~ 308 (508)
++ +++|.|++. ...|. +... .+. | +++-|.||++++.+..+++.++...- ++++..
T Consensus 325 -~~--ilvDEAwgah~~F~p~~~~~sam~~ga~~~~~i~vtQStHKtL~alTQaS~LHvkg~vd~~~~n~a--------- 392 (714)
T PRK15400 325 -KS--IHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEA--------- 392 (714)
T ss_pred -CC--EEEEccchhhhccCcccCCcChhhcCCCCCCceEEEEchhhcccchhHHhHHHHcCCCCHHHHHHH---------
Confidence 66 699999874 22221 1111 233 5 99999999988665556665543210 011111
Q ss_pred cccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCce--EEEecC
Q 010538 309 SIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADV--CTIYGT 386 (508)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~--~~~~~~ 386 (508)
-..+.+.+|+++-++++..+..++....-+.+.++..+++..+++.+.++.+.. .+ ++++.+
T Consensus 393 --------------~~m~~STSPsY~l~ASLD~a~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~--~~w~~~~~~~ 456 (714)
T PRK15400 393 --------------YMMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTES--DGWFFDVWQP 456 (714)
T ss_pred --------------HHHHcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCcc--cCceEEecCh
Confidence 223445678899999999999988753346778888999999999998874100 00 555543
Q ss_pred CCC-------------C---ccc-----CCCCceEEEEeeCCC------CCccCHHHHHHHHhhCCCeeccCCCCCchHH
Q 010538 387 YTS-------------E---VSY-----HDTGSMVSFNLKRPD------GSWFGYREVEKLASLSGIQLRTGCFCNPGAC 439 (508)
Q Consensus 387 ~~~-------------~---~~~-----~~~~~~v~~~~~~~~------~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~ 439 (508)
..- + ... .--..=+++..++.+ ...+....+.+.|+++||.+--.
T Consensus 457 ~~~~~~~~w~~~p~~~whgf~~~~~~~~~lDP~Klti~tpgi~~~g~~~~~Gipg~~v~~~L~e~gI~~E~~-------- 528 (714)
T PRK15400 457 DHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMKKDGTMSDFGIPASIVAKYLDEHGIVVEKT-------- 528 (714)
T ss_pred hhcccchhcccCccccccCcccccccccccCCceEEEEeCCCCCCccccccCCCHHHHHHHHHHcCCEEEec--------
Confidence 210 0 000 000112333343321 12244556888898889986432
Q ss_pred HhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 440 AKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 440 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
....+=+-++..+|.+++++|+++|.+|-+
T Consensus 529 -------------------------------d~~~iLfl~s~g~t~~~~~~L~~aL~~f~~ 558 (714)
T PRK15400 529 -------------------------------GPYNLLFLFSIGIDKTKALSLLRALTDFKR 558 (714)
T ss_pred -------------------------------CCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 145677888888999999999999988744
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-13 Score=143.23 Aligned_cols=337 Identities=13% Similarity=0.106 Sum_probs=198.5
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+ .+.-+|.+++++.+++. .... ....+ ......++.++++++++. + .+.|++|+
T Consensus 37 dG~~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~-~~~~-~~~~~-----~~~~~~~la~~l~~~~~~--~--~v~~~~sG 105 (406)
T PRK12381 37 QGKEYIDFAGGIAVNALGHAHPALREALNEQAS-KFWH-TGNGY-----TNEPVLRLAKKLIDATFA--D--RVFFCNSG 105 (406)
T ss_pred CCCEEEEcCcCHhhccCCCCCHHHHHHHHHHHh-hccc-ccCcc-----CCHHHHHHHHHHHhhCCC--C--eEEEcCCc
Confidence 6778899754 45558888888766542 2111 11111 123345677888887753 4 79999999
Q ss_pred HHHHHHHHhhcC-C------CCCCeEEEecc-cccchHHHHHHHHhcCCeEE---EEccCCc-cCccccccccccccccc
Q 010538 113 TAALKLVGEAFP-W------SHQSSYMYTME-NHNSVLGIREYALSQGAAAF---AIDVEEA-VDNDGLSESLVTSTKIS 180 (508)
Q Consensus 113 t~al~~~~~~l~-~------~~g~~vl~~~~-~h~s~~~~~~~~~~~G~~v~---~v~~~~~-~~~~~l~~~~~~~~~~~ 180 (508)
++|+..++.... . .++..|+.... -|......... .+.... ..|.... ... --
T Consensus 106 seA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~---~~~~~~~~~~~~~~~~~~~~------------~~ 170 (406)
T PRK12381 106 AEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSA---GGQPKYSQDFAPLPPDIRHA------------AY 170 (406)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhh---cCCcccccCCCCCCCCeeEe------------CC
Confidence 999988877642 1 23456666544 34333332222 121100 0011000 000 01
Q ss_pred cchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCcccc--CHHHHHHHHcCCccccccCCCCCCCeEEEEecccc-CCCC
Q 010538 181 LLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRF--NLDLINIMKKNPERILEISPFSKGRWMVLIDAAKG-CVTQ 257 (508)
Q Consensus 181 ~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~--~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~-~g~~ 257 (508)
+|++.++ +.+ .+++++|++.. .+++|-+. |.+.+.++.+ +|++||+++|+|++|. +|..
T Consensus 171 ~d~~~l~--~~l------~~~~aaviiEP-v~~~gg~~~~~~~~l~~l~~---------l~~~~~~llI~DEv~tG~gr~ 232 (406)
T PRK12381 171 NDLNSAS--ALI------DDQTCAVIVEP-IQGEGGVIPADKAFLQGLRE---------LCDRHNALLIFDEVQTGVGRT 232 (406)
T ss_pred CCHHHHH--Hhc------cCCeeEEEEeC-CcCCCCCcCCCHHHHHHHHH---------HHHHcCCEEEEcchhhCCCCC
Confidence 2466777 554 34678888875 45565443 4444444433 4445999999999984 3221
Q ss_pred C--C--CCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCC
Q 010538 258 P--P--DLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTA 331 (508)
Q Consensus 258 ~--~--d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 331 (508)
. . .......|++ ++.|.++ + | +|++++++++.+.+.+...+. ..+.
T Consensus 233 G~~~~~~~~~v~pDi~--t~sK~l~-g-G~~ig~~~~~~~~~~~~~~~~~~~------------------------t~~~ 284 (406)
T PRK12381 233 GELYAYMHYGVTPDVL--TTAKALG-G-GFPIGAMLTTEKCASVMTVGTHGT------------------------TYGG 284 (406)
T ss_pred cchhhhHhhCCCCCEE--Eehhhhh-C-CCceEEEEEcHHHHhhcCCCCCCC------------------------CCCC
Confidence 1 1 1122245764 6679887 4 4 899999998876655421110 0123
Q ss_pred ChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCc
Q 010538 332 SFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSW 411 (508)
Q Consensus 332 ~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 411 (508)
+....++..++++.+.+ .++.++++++.+++.+.|+++.. ...++..... .+.++++.++.....
T Consensus 285 ~pl~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~-----~~~~~~~vrg------~Gl~~~~~l~~~~~~- 349 (406)
T PRK12381 285 NPLASAVAGKVLELINT---PEMLNGVKQRHDWFVERLNTINA-----RYGLFSEIRG------LGLLIGCVLNAEYAG- 349 (406)
T ss_pred CHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHh-----hCCCEEEEec------CeEEEEEEecCchhh-
Confidence 45556666777887653 45788899999999999987620 1111111111 256677776542100
Q ss_pred cCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHH
Q 010538 412 FGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVN 491 (508)
Q Consensus 412 ~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l 491 (508)
....+.+.+.++||.+... .++.+|+++++..|++|++++
T Consensus 350 -~~~~~~~~l~~~Gv~v~~~---------------------------------------g~~~lRl~p~~~~t~~~i~~~ 389 (406)
T PRK12381 350 -KAKQISQEAAKAGVMVLIA---------------------------------------GPNVVRFAPALNISEEEITTG 389 (406)
T ss_pred -HHHHHHHHHHHCCcEEeeC---------------------------------------CCCEEEEeCCccCCHHHHHHH
Confidence 1234778888999998642 136899999999999999999
Q ss_pred HHhhhhhhhhh
Q 010538 492 RCSSFDFVNFS 502 (508)
Q Consensus 492 ~~~~~~~~~~~ 502 (508)
++.+.+.++-+
T Consensus 390 ~~~l~~~l~~~ 400 (406)
T PRK12381 390 LDRFARACERF 400 (406)
T ss_pred HHHHHHHHHHH
Confidence 99999877643
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-13 Score=138.23 Aligned_cols=335 Identities=12% Similarity=0.089 Sum_probs=217.6
Q ss_pred CCCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCC
Q 010538 38 ENGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSG 111 (508)
Q Consensus 38 ~~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g 111 (508)
.++.-|+|..+ .+-.+|.+++++.++. ...+.-+. .+ ..+...++-+.+++..+ ..+ .|.|++|
T Consensus 39 ~~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~-~kl~h~sn-~~-----~~~~~~~la~~L~~~s~-~~d--~vff~NS 108 (404)
T COG4992 39 QQGREYLDFAAGIAVNNLGHCHPALVEALKEQA-EKLWHVSN-LF-----YNEPQAELAEKLVELSP-FAD--RVFFCNS 108 (404)
T ss_pred CCCCEeeeeccceeeeccCCCCHHHHHHHHHHH-HHhhhccc-cc-----CChHHHHHHHHHHhhCc-ccc--EEEEcCC
Confidence 37889999633 4556899998876643 33332111 11 12335566777888877 566 8999999
Q ss_pred hHHHHHHHHhhcC-CCC---CCeEEEecccccc-hHHHHH------HHHhcC---CeEEEEccCCccCcccccccccccc
Q 010538 112 ATAALKLVGEAFP-WSH---QSSYMYTMENHNS-VLGIRE------YALSQG---AAAFAIDVEEAVDNDGLSESLVTST 177 (508)
Q Consensus 112 ~t~al~~~~~~l~-~~~---g~~vl~~~~~h~s-~~~~~~------~~~~~G---~~v~~v~~~~~~~~~~l~~~~~~~~ 177 (508)
++||+..++.... +.. ..+||+....+-. .+..+. +.+.++ -.++.+|.+
T Consensus 109 GaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfn---------------- 172 (404)
T COG4992 109 GAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFN---------------- 172 (404)
T ss_pred cHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCC----------------
Confidence 9999998876542 222 3467766544422 111111 111111 112333332
Q ss_pred ccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC-CC
Q 010538 178 KISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC-VT 256 (508)
Q Consensus 178 ~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~-g~ 256 (508)
|+++++ +++ +++|..|++.-++-..|.+.+-++.-+.+++ +|++||+++|.|++|.. |.
T Consensus 173 ----Di~al~--~ai------~~~taAvivEPIQGEgGV~~~~~~fl~~lr~--------lCd~~g~LLI~DEVQtG~GR 232 (404)
T COG4992 173 ----DIEALE--AAI------DEDTAAVIVEPIQGEGGVIPAPPEFLKALRE--------LCDEHGALLILDEVQTGLGR 232 (404)
T ss_pred ----CHHHHH--HHh------ccCeEEEEEecccCCCCCCCCCHHHHHHHHH--------HHHHhCeEEEEeccccCCCc
Confidence 567888 555 5689999999999999999997766666665 66779999999999974 22
Q ss_pred CC----CCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCC
Q 010538 257 QP----PDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTAS 332 (508)
Q Consensus 257 ~~----~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~ 332 (508)
.- ........|+++.. |.+||---+|.+++++...+.+.|-.+|.. . .-|
T Consensus 233 TGk~fA~e~~gV~PDI~tla--K~LgGG~PigA~la~~~~~~~~~~G~HgST----------------------f--GGN 286 (404)
T COG4992 233 TGKLFAYEHYGVEPDILTLA--KALGGGFPIGAMLATEEIASAFTPGDHGST----------------------F--GGN 286 (404)
T ss_pred cchHHHHHHhCCCCCEEEee--ccccCCccceeeEEchhhhhcCCCCcccCC----------------------C--CcC
Confidence 11 01112237898887 976632238999999665555555433321 1 124
Q ss_pred hhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCcc
Q 010538 333 FLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWF 412 (508)
Q Consensus 333 ~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 412 (508)
..+.++..++++.+.+ +.+.++.+++.++|.+.|+++.. .+.++..-.. ++-++-+.+....
T Consensus 287 pLacAv~~a~l~~l~~---e~ll~~v~~~g~~~~~~L~~l~~-----~~~~v~~vRG------~GLmiGiel~~~~---- 348 (404)
T COG4992 287 PLACAVALAVLEVLLE---EGLLENVREKGEYLLQRLRELKR-----RYPLVKEVRG------RGLMIGIELKEPY---- 348 (404)
T ss_pred HHHHHHHHHHHHHHcc---hhHHHHHHHHHHHHHHHHHHHhh-----cCCceeeeec------ceeEEEEEecCcc----
Confidence 4556666677887766 56778888999999999988742 2223332221 2677777775531
Q ss_pred CHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHH
Q 010538 413 GYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNR 492 (508)
Q Consensus 413 ~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~ 492 (508)
...++.+.+.++|+.+-... ++.+|+.+..-.|+||++..+
T Consensus 349 ~a~~~~~~~~~~gvL~~~a~---------------------------------------~~ViR~~PpL~i~~eei~~~~ 389 (404)
T COG4992 349 RARDIVRALREEGVLVLPAG---------------------------------------PNVIRFLPPLVITEEEIDEAL 389 (404)
T ss_pred cHHHHHHHHHHCCeEEecCC---------------------------------------CCeEEecCCccCCHHHHHHHH
Confidence 23468999999999976531 569999999999999999999
Q ss_pred Hhhhhhhhh
Q 010538 493 CSSFDFVNF 501 (508)
Q Consensus 493 ~~~~~~~~~ 501 (508)
+.+...++-
T Consensus 390 ~~l~~~l~~ 398 (404)
T COG4992 390 DALERALAA 398 (404)
T ss_pred HHHHHHHHH
Confidence 999987763
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-13 Score=142.48 Aligned_cols=336 Identities=13% Similarity=0.050 Sum_probs=198.3
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+ .+.-+|.+++++.++.. ... .+.... ..+...++.+++++..+ .+ .++|++|+
T Consensus 34 dG~~~lD~~sg~~~~~lGh~~p~v~~a~~~q~~-~~~-~~~~~~-----~~~~~~~la~~l~~~~~--~~--~v~f~~SG 102 (395)
T PRK03715 34 NGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAE-KLI-NPSPAF-----YNEPMAKLAGLLTQHSC--FD--KVFFANSG 102 (395)
T ss_pred CCCEEEECCcChhhccCCCCCHHHHHHHHHHHH-hcc-cccccc-----cCHHHHHHHHHHhhccC--CC--EEEEeCCc
Confidence 6778888753 45558888888766542 211 111111 11223334444444322 34 79999999
Q ss_pred HHHHHHHHhhcCC------CCCCeEEEe-cccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhh
Q 010538 113 TAALKLVGEAFPW------SHQSSYMYT-MENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQ 185 (508)
Q Consensus 113 t~al~~~~~~l~~------~~g~~vl~~-~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~ 185 (508)
++|+..++..... .+...||+. ...|.+...........+......|........ --.|+++
T Consensus 103 seA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~-----------~~~d~~~ 171 (395)
T PRK03715 103 AEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKA-----------ELNDIAS 171 (395)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceee-----------CCchHHH
Confidence 9999988876631 122445555 456666555544321111111111111100000 0014677
Q ss_pred hhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEeccccC-CCCC--
Q 010538 186 RRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC-VTQP-- 258 (508)
Q Consensus 186 l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~-g~~~-- 258 (508)
++ +.+ .+++++|++..+++..|.+.| +++|.++|++ +|+++|+|++|+. |..-
T Consensus 172 l~--~~l------~~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~------------~~~llI~DEv~tG~GRtG~~ 231 (395)
T PRK03715 172 VE--KLI------TDKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQ------------HGLLLIVDEVQTGCGRTGTL 231 (395)
T ss_pred HH--HHc------CCCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHH------------cCCEEEEeccccCCCCCcch
Confidence 77 554 346889999999999999988 8888888887 9999999999872 2111
Q ss_pred --CCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHH
Q 010538 259 --PDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSI 336 (508)
Q Consensus 259 --~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~ 336 (508)
.+......|++++| |.+++-..+|.++++++... +.+...+ . .. +.+....
T Consensus 232 ~a~~~~gv~PDi~t~g--K~lg~G~p~~av~~~~~i~~-~~~~~~~---------------------~-T~--~g~pl~~ 284 (395)
T PRK03715 232 FAYELSGIEPDIMTLG--KGIGGGVPLAALLAKAEVAV-FEAGDQG---------------------G-TY--NGNPLMT 284 (395)
T ss_pred hhHhhcCCCCceeeeh--hhhhCCcceEEEEEcccccc-ccCCCcC---------------------C-CC--CCCHHHH
Confidence 11112247887665 97774222788888887631 1111000 0 01 2345556
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHH
Q 010538 337 ASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYRE 416 (508)
Q Consensus 337 ~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 416 (508)
++..++++.+.+ +++.++.+++.++|++.|+++.. ..++..+ .+ .+.++.+.+.+... ..
T Consensus 285 aaala~L~~l~~---~~l~~~~~~~g~~l~~~L~~l~~---~~~i~~v--rG-------~Glm~~i~l~~~~~-----~~ 344 (395)
T PRK03715 285 AVGVAVISQLLA---PGFLEGVRARGEYLKEKLLELSE---ERGLEGE--RG-------EGLLRALLLGKDIG-----PQ 344 (395)
T ss_pred HHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHhh---cCCcCeE--Ec-------ceeEEEEEecCchH-----HH
Confidence 666778887764 46778899999999999886521 0112111 11 27888888754211 12
Q ss_pred HHHHHhhC---CCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHH
Q 010538 417 VEKLASLS---GIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRC 493 (508)
Q Consensus 417 l~~~L~~~---gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~ 493 (508)
+.+.+.+. ||.+... ....+|+++....|++||+.+++
T Consensus 345 ~~~~~~~~~~~Gi~~~~~---------------------------------------~~~~lR~~p~l~~t~~ei~~~~~ 385 (395)
T PRK03715 345 IVEKARDMQPDGLLLNAP---------------------------------------RPNLLRFMPALNVTTEEIDQMIA 385 (395)
T ss_pred HHHHHHhccCCCEEEeec---------------------------------------CCCEEEEeCCcccCHHHHHHHHH
Confidence 44455555 9887531 13679999999999999999999
Q ss_pred hhhhhhhhh
Q 010538 494 SSFDFVNFS 502 (508)
Q Consensus 494 ~~~~~~~~~ 502 (508)
.|.+.++.+
T Consensus 386 ~l~~~l~~~ 394 (395)
T PRK03715 386 MLRSVLDKL 394 (395)
T ss_pred HHHHHHHhh
Confidence 999887643
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.4e-13 Score=146.71 Aligned_cols=323 Identities=13% Similarity=0.048 Sum_probs=210.9
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE 162 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~ 162 (508)
.....++.+.+|+.+|++.. ..+++|+|.++..++.+. ..+|+.||+....|-|+...+.+ .|+++++++...
T Consensus 194 ~G~i~eAe~~aA~~fgAd~t---yfvvNGTS~~n~av~~a~-~~~Gd~VLvdRN~HKSv~~aLil---sga~PVYl~P~~ 266 (713)
T PRK15399 194 TGPHLEAEEYIARTFGAEQS---YIVTNGTSTSNKIVGMYA-APAGSTLLIDRNCHKSLAHLLMM---SDVVPIWLKPTR 266 (713)
T ss_pred ChHHHHHHHHHHHHhCCCcE---EEEeCChHHHHHHHHHHh-cCCCCEEEeecccHHHHHHHHHH---cCCeeEEecccc
Confidence 34578899999999999865 788899999999999998 78999999999999998875544 599999987553
Q ss_pred c--cCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCC
Q 010538 163 A--VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFS 240 (508)
Q Consensus 163 ~--~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~ 240 (508)
+ +-+-. ++.-.++.+.++ +.|++.. ..++++.++++++ |..|.+.+++.|.+++.-
T Consensus 267 n~~Gi~g~-------I~~~~~~~e~I~--~~i~~~p-~~~~p~~vvit~p-TYdGi~yd~~~I~~~~g~----------- 324 (713)
T PRK15399 267 NALGILGG-------IPRREFTRDSIE--EKVAATT-QAQWPVHAVITNS-TYDGLLYNTDWIKQTLDV----------- 324 (713)
T ss_pred cccCCcCC-------CChhhccHHHHH--HHHHhCC-CcCCceEEEEECC-CCCceeeCHHHHHHHhCC-----------
Confidence 1 11110 111122447777 6665431 1134467888875 778999999999988752
Q ss_pred CCCeEEEEeccccC--CCCCC--CCCCC----CCcEE---EEeccccccCCCcceEEEEechhH-hhhccccccCceEEe
Q 010538 241 KGRWMVLIDAAKGC--VTQPP--DLSKY----PVDFV---VMSFYKIFGYPTGLGALIMRNDAA-KLLKNTYFSGGTVAA 308 (508)
Q Consensus 241 ~~g~~vivD~a~~~--g~~~~--d~~~~----~~D~~---~~S~~K~~g~P~G~G~l~~~~~~~-~~l~~~~~g~~~~~~ 308 (508)
. ++++|.||+. ...|. +...+ +.|.+ +-|.||++++.+..+++.++...- ++++..
T Consensus 325 --~-~ilvDEAhgah~~F~p~~~~~sam~~~~~aD~~i~~tQStHKtL~alTQaS~iHvk~~vd~~~~n~a--------- 392 (713)
T PRK15399 325 --P-SIHFDSAWVPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKMLAAFSQASLIHIKGEYDEETFNEA--------- 392 (713)
T ss_pred --C-EEEEeccchhhhhcCcccCCcChhhCCCCCCeeeeeeeehhccccccchheeeeecCCCCHHHHHHH---------
Confidence 1 5689999874 22221 11111 35655 899999988776678887765321 111111
Q ss_pred cccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCce-EEEecCC
Q 010538 309 SIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADV-CTIYGTY 387 (508)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~-~~~~~~~ 387 (508)
-..+.+.+|+++-++++..+..++....-+.+.++..+++..+++.+.++.+.- .+. ++++.+.
T Consensus 393 --------------~~m~~STSPsY~LmASLD~a~~~m~~~~G~~l~~~~i~~a~~fR~~l~~~~~~~-~~w~f~~~~~~ 457 (713)
T PRK15399 393 --------------FMMHTSTSPSYPIVASVETAAAMLRGNPGKRLINRSVERALHFRKEVQRLREES-DGWFFDIWQPE 457 (713)
T ss_pred --------------HHHHcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccccc-cCceeeecCcc
Confidence 223445678899999999999988753346777888889999999998763100 000 3454431
Q ss_pred C-------------CC---cc----c-CCCCceEEEEeeCCC------CCccCHHHHHHHHhhCCCeeccCCCCCchHHH
Q 010538 388 T-------------SE---VS----Y-HDTGSMVSFNLKRPD------GSWFGYREVEKLASLSGIQLRTGCFCNPGACA 440 (508)
Q Consensus 388 ~-------------~~---~~----~-~~~~~~v~~~~~~~~------~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~ 440 (508)
. .. .. . .--..=+++..++.+ ...+....+.+.|+++||.+--.
T Consensus 458 ~~~~~~~w~l~p~~~whgf~~~~~~~~~lDP~KltI~t~g~~~~g~~~~~Gi~g~~l~~~L~e~gI~~E~~--------- 528 (713)
T PRK15399 458 NVDEAECWPVAPGEQWHGFKDADADHMFLDPVKVTILTPGMDEQGNMSEEGIPAALVAKFLDERGIVVEKT--------- 528 (713)
T ss_pred ccCCccceecCCCcccccccccccccccCCCceEEEEecCcccccccccCCCCHHHHHHHHHHcCCEEEec---------
Confidence 0 00 00 0 000112333343321 12345566889999999997532
Q ss_pred hhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 441 KYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 441 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
....+=+-++..+|.+++++|+++|.+|-+
T Consensus 529 ------------------------------d~~~vL~l~s~g~t~~~~~~L~~aL~~f~~ 558 (713)
T PRK15399 529 ------------------------------GPYNLLFLFSIGIDKTKAMGLLRGLTEFKR 558 (713)
T ss_pred ------------------------------CCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 145677778888999999999999988744
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.2e-14 Score=141.59 Aligned_cols=340 Identities=16% Similarity=0.125 Sum_probs=224.6
Q ss_pred CeeeeCCC-CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHH
Q 010538 41 TVYLDHAG-ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLV 119 (508)
Q Consensus 41 ~iyld~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~ 119 (508)
+=||..+. .++..+.+.+++ +.+..... . +.... ...+...++.+.+|+++|.+.. ++|..|-. .+.+.
T Consensus 144 YNYLGFa~~~g~ca~~~~~~~-~kygl~~c-s--s~~e~--G~~~~hkelE~l~A~f~g~e~a---~vF~mGf~-TNs~~ 213 (519)
T KOG1357|consen 144 YNYLGFAQSVGPCAEASLKSF-DKYGLSRC-S--SRHEA--GTTEEHKELEELVARFLGVEDA---IVFSMGFA-TNSMN 213 (519)
T ss_pred cccccccccCCcCChHHHHHH-HHhccccc-c--cchhc--ccHHHHHHHHHHHHHhcCCcce---EEEecccc-ccccC
Confidence 44666655 455556666554 43422111 1 11122 2456778899999999999877 88887743 44556
Q ss_pred HhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCC
Q 010538 120 GEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAG 199 (508)
Q Consensus 120 ~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~ 199 (508)
+.++ ..++.-|+....+|.|+...+++ .|+.++....++-.+++. .|+ ++|....+.+
T Consensus 214 ~p~l-~~~gsLIiSDelNHaSi~~GaRL---SgAtiRVfkHNdm~~LEr----------------~Lr--d~I~~gqP~T 271 (519)
T KOG1357|consen 214 IPSL-LGKGSLIISDELNHASLITGARL---SGATTRVFRHNDMQGLER----------------LLR--DAIVYGQPKT 271 (519)
T ss_pred ccee-ecCCcceeeccccchheeccccc---cCceEEEEecCCHHHHHH----------------HHH--HHHhcCCCCc
Confidence 6666 67889999999999998766555 488888887765333311 122 3332222222
Q ss_pred C---CceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCC---------CCCCCCc
Q 010538 200 D---AYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPD---------LSKYPVD 267 (508)
Q Consensus 200 ~---~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d---------~~~~~~D 267 (508)
. +.-+|++....++-|.+.++.++.+++++ +.++++.|++|+.|+.+.. +..-++|
T Consensus 272 hrp~kki~iivegiysmEg~iv~Lp~vvalkkk------------ykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvD 339 (519)
T KOG1357|consen 272 HRPWKKILICVEGIYSMEGTIVDLPEVVALKKK------------YKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVD 339 (519)
T ss_pred CCcchheeeeeccceeccCeecccHHHHHhhcc------------ccEEEEeeccccccccCCCCcceeeccCCCchhhe
Confidence 1 12355556677788999999999999997 9999999999998776321 2233689
Q ss_pred EEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH
Q 010538 268 FVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN 347 (508)
Q Consensus 268 ~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~ 347 (508)
++.+++.|.|| ..| |++-.+++.++.++..... .....+.+.+.......+++.+.
T Consensus 340 ImMGtftKSfg-a~G-Gyiagsk~lid~lrt~s~~----------------------~~yat~~sppvaqq~~ssl~~i~ 395 (519)
T KOG1357|consen 340 IMMGTFTKSFG-AAG-GYIAGSKELIDYLRTPSPS----------------------ALYATSLSPPVAQQILTSVKHIM 395 (519)
T ss_pred eecceehhhcc-ccc-ceecCcHHHHhhhccCCCc----------------------eeecccCChHHHHHHHHHHHhhc
Confidence 99999999999 555 8888888887765533111 11112223333333345566554
Q ss_pred h----cChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhh
Q 010538 348 S----LTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASL 423 (508)
Q Consensus 348 ~----~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~ 423 (508)
- .+.++..+++.+.+.+++..+++. ++.+++... ++++.+.+-.+..- ..+.+.+.+
T Consensus 396 G~dgt~~g~~k~~~l~~ns~yfr~~l~~~-------gfivyG~~d--------SpVvplll~~~~k~----~~f~r~~l~ 456 (519)
T KOG1357|consen 396 GEDGTNRGRQKIERLAENSRYFRWELQKM-------GFIVYGNND--------SPVVPLLLYGPAKI----VAFSREMLE 456 (519)
T ss_pred CCCcccHHHHHHHHHHhhhHHHHHhhhcC-------cEEEecCCC--------CCcceeeecCcccc----cHHHHHHHh
Confidence 2 235777888999999999999987 799998776 56666665443221 136777777
Q ss_pred CCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 424 SGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 424 ~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
++|.+-...+.+.+.. .+.+|++.+..+|.|+++++++.+...-
T Consensus 457 ~nigvVvvgfPatpl~--------------------------------e~r~R~c~Sa~ht~e~ld~~l~~i~~~g 500 (519)
T KOG1357|consen 457 RNIGVVVVGFPATPLL--------------------------------ESRARFCLSASHTKEDLDRALEVIDRVG 500 (519)
T ss_pred cCceEEEEeCCCchHH--------------------------------HhHHHhhhcccccHHHHHHHHHHHhhhc
Confidence 8877665554443321 5679999999999999999998876543
|
|
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.2e-13 Score=135.14 Aligned_cols=360 Identities=14% Similarity=0.162 Sum_probs=187.4
Q ss_pred hHHHHHHhhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCC----CCccchhh-hhhHHHHHHHHHHHHHcCCC
Q 010538 26 IDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNP----HSQSDISL-ATCDIVRAAREQVLDYFNAS 100 (508)
Q Consensus 26 ~~~~r~~~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~r~~la~~~~~~ 100 (508)
.++++. +|..+...-+-|| -+-+.|++..+. +...++. ..+.. ....-..+ ...+.+.++|+.+|+++|++
T Consensus 10 ~~~l~~-~y~~~ka~~L~Ld-mtRGKPs~eQLd-LS~~lL~-~~~~~~~~~dG~D~RNY~G~l~Gipe~r~l~a~llgv~ 85 (425)
T PF12897_consen 10 LAELRK-QYEELKAKGLKLD-MTRGKPSPEQLD-LSNPLLD-LPGSSDYLADGTDCRNYPGGLDGIPEARELFAELLGVP 85 (425)
T ss_dssp HHHHHH-HHHHHHHTT--EE-S---S--HHHHH-GGGGGGG-SSTTCCBECTTEBTTSS-S-SS--HHHHHHHHHHHTS-
T ss_pred HHHHHH-HHHHHHHcCCCcc-cCCCCCCHHHHh-hhHHHhc-CCCCccccCCCccccCCCCccCChHHHHHHHHHHhCCC
Confidence 344565 6655545567788 446666777764 2333443 21111 11001112 33566889999999999999
Q ss_pred CCCceEEEcCChHHHHHH--HHhhcC---------CCC--CCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCcc
Q 010538 101 MKDYKCIFTSGATAALKL--VGEAFP---------WSH--QSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDND 167 (508)
Q Consensus 101 ~~~~~i~~t~g~t~al~~--~~~~l~---------~~~--g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~ 167 (508)
++ +|++..+++-.++- +..++. |.. .-+.|++. |+|.+-....+.+|++.+.||+++++.
T Consensus 86 ~~--~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPv---PGYDRHFai~E~~Giemi~VpM~~dGP-- 158 (425)
T PF12897_consen 86 PE--NVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPV---PGYDRHFAITEHFGIEMIPVPMTEDGP-- 158 (425)
T ss_dssp GG--GEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEE---S--HHHHHHHHHCT-EEEEEEEETTEE--
T ss_pred HH--HEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecC---CCchHHHHHHHhhCcEEEecCCCCCCC--
Confidence 99 89888887755432 222221 211 23578776 677777777888999999999987763
Q ss_pred ccccccccccccccchhhhhcCCCCCCCCCCCCCceEE-EEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEE
Q 010538 168 GLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLF-AFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMV 246 (508)
Q Consensus 168 ~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv-~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~v 246 (508)
|.+.++ +.+.+ ++..|.+ +++..+||||.+++-+.+.+++.= -+...+..|
T Consensus 159 --------------DmD~Ve--~LV~~----D~svKGiWcVP~ySNPtG~tySde~vrrlA~m--------~~AA~DFRI 210 (425)
T PF12897_consen 159 --------------DMDMVE--ELVAE----DPSVKGIWCVPKYSNPTGITYSDEVVRRLAAM--------KTAAPDFRI 210 (425)
T ss_dssp ---------------HHHHH--HHTHT----STTEEEEEE-SSS-TTT-----HHHHHHHHHS----------SSTT-EE
T ss_pred --------------CHHHHH--HHHhc----CCccceEEeCCCccCCCCccCCHHHHHHHhcC--------CcCCcCeEE
Confidence 577777 55432 4566666 669999999999999988888862 122379999
Q ss_pred EEeccccCCCCC----C----CCC-------CCCCcEEEEeccc-cccCCCcceEEEEechhHhhhccccccCceEEecc
Q 010538 247 LIDAAKGCVTQP----P----DLS-------KYPVDFVVMSFYK-IFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASI 310 (508)
Q Consensus 247 ivD~a~~~g~~~----~----d~~-------~~~~D~~~~S~~K-~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~ 310 (508)
++|.++++-+.- . |+- ..+.-+..+|++| +|. -.|++++-.+++.++.+...+..
T Consensus 211 ~WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~-GaGva~~aaS~~Nl~~~~~~~~~-------- 281 (425)
T PF12897_consen 211 FWDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKITFP-GAGVAFFAASEANLAWIKKHLSV-------- 281 (425)
T ss_dssp EEE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS-T-TSS-EEEEE-HHHHHHHHHHHHH--------
T ss_pred EeecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccccC-CcceeeeecCHHHHHHHHHHhcC--------
Confidence 999998875541 1 110 1123378899999 566 33799999998887766544210
Q ss_pred cchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHh-c-ChHHHHHHHHHH--------HHHHHHHHh-cccCCCCCc
Q 010538 311 ADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINS-L-TVPAICRHIASL--------GMYVRKVLL-SLRHENGAD 379 (508)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~-~-g~~~i~~~~~~l--------~~~l~~~L~-~l~~~~~~~ 379 (508)
...|.-- +-.++ -.+++.+ . |+....++++++ .+.|.++|. .. .
T Consensus 282 ---------------~tIgpdK---vNQLR-Hvrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~------~ 336 (425)
T PF12897_consen 282 ---------------QTIGPDK---VNQLR-HVRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGL------G 336 (425)
T ss_dssp ---------------H-S---H---HHHHH-HHHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGG------T
T ss_pred ---------------ceeCccH---HHHHH-HHHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCC------C
Confidence 0011111 11122 2233332 1 333333333222 234444554 32 1
Q ss_pred eEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeecc-CCCCCchHHHhhcCCChhhhhhhhhcCC
Q 010538 380 VCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRT-GCFCNPGACAKYLGLSHSDLLSNIEAGH 458 (508)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~-g~~~~~~~~~~~~~~~~s~~~~~~~~~~ 458 (508)
..+...|.+ +.+++|++.+..+ +.++++.++.||.+++ |..+-.+
T Consensus 337 ia~Wt~P~G--------GYFIsld~~~G~A-----krvV~lakeAGV~LT~AGAtfPyg--------------------- 382 (425)
T PF12897_consen 337 IASWTKPKG--------GYFISLDVLDGTA-----KRVVELAKEAGVALTPAGATFPYG--------------------- 382 (425)
T ss_dssp SEEE---SB--------SS-EEEEESTT-H-----HHHHHHHHHTTEE---TTTTSGGG---------------------
T ss_pred eeEecCCCC--------ceEEEEecCCChH-----HHHHHHHHHhCceeCCCCCCCCCC---------------------
Confidence 234444444 8999999877533 4589999999999987 4433221
Q ss_pred ccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 459 VCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 459 ~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
+++ .+..|||+++ |-+.||++..++.+.-+++.+
T Consensus 383 ---~DP------~D~nIRiAPS-~P~leel~~Am~~~~~cv~la 416 (425)
T PF12897_consen 383 ---KDP------RDSNIRIAPS-YPSLEELETAMDVFATCVKLA 416 (425)
T ss_dssp -----T------TS-EEEE--S-SS-HHHHHHHHHHHHHHHHHH
T ss_pred ---CCC------CCCcEEecCC-CCCHHHHHHHHHHHHHHHHHH
Confidence 111 2678999999 468999999999988877653
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.5e-14 Score=132.76 Aligned_cols=290 Identities=14% Similarity=0.097 Sum_probs=195.9
Q ss_pred HHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCcccc
Q 010538 90 REQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGL 169 (508)
Q Consensus 90 r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l 169 (508)
+..+++--+..++ .|.+.-|+.+.+.+++++...++.++|+..+..|+-+.-.+ .-.+++|+.+|.+.+..+
T Consensus 75 s~a~~~dkpLt~d--nic~GvGsDE~ID~iiR~~c~PGkeKIl~cPPtysMY~v~A---~iNd~eVvkvpl~pdF~l--- 146 (375)
T KOG0633|consen 75 SDALAQDKPLTSD--NICVGVGSDELIDLIIRCVCDPGKEKILDCPPTYSMYVVDA---AINDAEVVKVPLNPDFSL--- 146 (375)
T ss_pred hhhcccCCCCCcc--ceEEecCcHHHHHHHHhheecCCccceeecCCcceeEEEEe---ecCCceEEEecCCCCccc---
Confidence 3444555566777 89999999999999999985444488988886665432211 124899999999886665
Q ss_pred ccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEe
Q 010538 170 SESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLID 249 (508)
Q Consensus 170 ~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD 249 (508)
+++++. +.++. +..+|+++++++.||||..+..+.|.++.+-| .+.+|+||
T Consensus 147 ------------nvdai~--evl~~----ds~iK~~F~tSPgNPtg~~ik~~di~KiLe~p-----------~nglVVvD 197 (375)
T KOG0633|consen 147 ------------NVDAIA--EVLEL----DSKIKCIFLTSPGNPTGSIIKEDDILKILEMP-----------DNGLVVVD 197 (375)
T ss_pred ------------cHHHHH--HHHhc----cccceEEEEcCCCCCCcccccHHHHHHHHhCC-----------CCcEEEEe
Confidence 566666 44432 34679999999999999999999999999973 47899999
Q ss_pred ccccC----CCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCcc
Q 010538 250 AAKGC----VTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 250 ~a~~~----g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
.++-- +....=++++.--+++-+++|.|| .+| +|+.+.+...++-+...-
T Consensus 198 EAYidFsg~~S~~~lV~kYpNLivlqTlSKsfG-LAGiRvG~~~~~~~ia~iln~~K----------------------- 253 (375)
T KOG0633|consen 198 EAYIDFSGVESRMKLVKKYPNLIVLQTLSKSFG-LAGIRVGYGAFPLSIAEILNRAK----------------------- 253 (375)
T ss_pred eeeEeeccccccchHhHhCCceeehhhhhhhcC-cceeEeecccccHHHHHHHHhcc-----------------------
Confidence 98742 111122344445577789999999 778 788888887765443220
Q ss_pred ccccCCCCChh---HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEE-EecCCCCCcccCCCCce
Q 010538 324 ELFEDGTASFL---SIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCT-IYGTYTSEVSYHDTGSM 399 (508)
Q Consensus 324 ~~~~~gt~~~~---~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 399 (508)
...|++ ..+++. |+.--.-.-++..+..+.+-+.+|..+|.+++ .+. ..++.. +++
T Consensus 254 -----aPYNiS~~~s~~AL~-Als~~n~kkme~~rdaiv~er~RL~keLt~v~------~~~~~~gg~d--------aNF 313 (375)
T KOG0633|consen 254 -----APYNISVAGSVAALA-ALSDSNGKKMEDVRDAIVRERERLFKELTEVP------FLNDYPGGSD--------ANF 313 (375)
T ss_pred -----CCccccchhHHHHHH-hcCcccchHHHHHHHHHHHHHHHHHHHhhcCc------cccCCCCccc--------ccE
Confidence 001111 122222 22210111367888888899999999998874 333 222222 788
Q ss_pred EEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEec
Q 010538 400 VSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSF 479 (508)
Q Consensus 400 v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~ 479 (508)
+.+++.+.+.. .......+.+.+.||.||--. ... ...|++||++
T Consensus 314 iLi~v~~~~n~-~akkly~q~at~~gVvVRfrg---se~-------------------------------~c~G~lRitv 358 (375)
T KOG0633|consen 314 ILIEVTGGDNG-MAKKLYKQDATKMGVVVRFRG---SEE-------------------------------GCKGYLRITV 358 (375)
T ss_pred EEEEEcCCCcH-HHHHHHHHHHHhcceEEEEcC---Ccc-------------------------------ccceeEEEEc
Confidence 88998765432 233345556678899997421 100 1268999999
Q ss_pred CCCCCHHHHHHHHHhhhhh
Q 010538 480 GYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 480 ~~~~t~eev~~l~~~~~~~ 498 (508)
+ |.||-+.|++-+++|
T Consensus 359 G---t~EentvL~k~~K~~ 374 (375)
T KOG0633|consen 359 G---TPEENTVLMKCLKQF 374 (375)
T ss_pred C---CcccchHHHHHHHhh
Confidence 9 999999999888876
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-12 Score=136.31 Aligned_cols=360 Identities=11% Similarity=0.027 Sum_probs=205.4
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..+ .|--+|.+.+++.+++. .... ....+. ......++-+.+++.+...-+ .+.|++++
T Consensus 39 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~-~~~~-~~~~~~----~~~~~~~la~~L~~~~p~~~~--~v~f~~sG 110 (443)
T PRK08360 39 EGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTD-KLIH-YTPIYG----FPVEPLLLAEKLIEIAPGDNP--KVSFGLSG 110 (443)
T ss_pred CCCEEEEccccHhhcccCCCCHHHHHHHHHHHH-hccC-cccccc----CcHHHHHHHHHHHHhCCCCCC--EEEEcCCH
Confidence 7888999743 35558888888766543 2211 111111 122234455567777765445 79999999
Q ss_pred HHHHHHHHhhcC-CCCCCeEEEecc-cccchHHHHHHHH-----h--cC--CeEEEEccCCccCcccccccccccccccc
Q 010538 113 TAALKLVGEAFP-WSHQSSYMYTME-NHNSVLGIREYAL-----S--QG--AAAFAIDVEEAVDNDGLSESLVTSTKISL 181 (508)
Q Consensus 113 t~al~~~~~~l~-~~~g~~vl~~~~-~h~s~~~~~~~~~-----~--~G--~~v~~v~~~~~~~~~~l~~~~~~~~~~~~ 181 (508)
|+|+..++.... ..+...|+.... -|........... + .+ ..+..+|......... . .........
T Consensus 111 sEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~ 187 (443)
T PRK08360 111 SDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPF-G--KEPGSCKME 187 (443)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccc-c--CchhhhHHH
Confidence 999988766542 234456665543 3433333222110 0 01 1123333321110000 0 000000001
Q ss_pred chhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecccc-CCC
Q 010538 182 LPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKG-CVT 256 (508)
Q Consensus 182 d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~-~g~ 256 (508)
+.+.++ +.+++ ....++++.|++.-+++++|.+.| ++++.++|++ +|+++|+|++|+ +|.
T Consensus 188 ~~~~~~--~~l~~-~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~------------~g~llI~DEv~~g~gr 252 (443)
T PRK08360 188 CVEYIK--EKFEG-EVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDE------------HGILLVVDEVQSGLGR 252 (443)
T ss_pred HHHHHH--HHHHh-ccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHH------------cCCEEEEeccccCCCc
Confidence 233344 33321 111367899999888999999998 4456666665 999999999987 332
Q ss_pred CC----CCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCC
Q 010538 257 QP----PDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGT 330 (508)
Q Consensus 257 ~~----~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt 330 (508)
.. ........|++++ +|.++ + | +|++++++++.+.+.....+ . ...
T Consensus 253 ~G~~~a~~~~~~~pDiitl--sK~l~-~-G~pigav~~~~~i~~~~~~~~~~-----------------------~-T~~ 304 (443)
T PRK08360 253 TGKWFAIEHFGVEPDIITL--GKPLG-G-GLPISATIGRAEIMDSLPPLAHA-----------------------F-TLS 304 (443)
T ss_pred CccchhhhhcCCCCCEEEe--ccccc-C-CceeEEEEEcHHHHhhhcCCCCC-----------------------C-CCC
Confidence 21 1111234677755 79888 5 4 89999998887665432110 0 112
Q ss_pred CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCC-
Q 010538 331 ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDG- 409 (508)
Q Consensus 331 ~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~- 409 (508)
.+....++..++++.+.+. .+.++.+++.++|++.|+++.. ...++..... ++.++.+.+.+...
T Consensus 305 ~~p~~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~l~~-----~~~~v~~vrg------~Gl~~gie~~~~~~~ 370 (443)
T PRK08360 305 GNPVASAAALAVIEEIEEK---NLLKRAEKLGNYTKKRLEEMKK-----KHELIGDVRG------IGLMIGVDLVKDRET 370 (443)
T ss_pred cCHHHHHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHHHHH-----hCCCeeeeec------cceEEEEEEecCCcc
Confidence 3344466666778877653 4678888888888888876521 1111221111 26677777643211
Q ss_pred CccC---HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHH
Q 010538 410 SWFG---YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFE 486 (508)
Q Consensus 410 ~~~~---~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~e 486 (508)
...+ ...+.+.+.++||.+... ..+.+|+++.+.+|++
T Consensus 371 ~~~~~~~~~~~~~~l~~~Gi~~~~~---------------------------------------~~~~lr~~P~l~~t~~ 411 (443)
T PRK08360 371 KERAYEEAAKVVWRAWELGLIVTFF---------------------------------------SGNVLRIQPPLTIEKE 411 (443)
T ss_pred cCccHHHHHHHHHHHHHCCeEEeec---------------------------------------CCCEEEEeCCCCCCHH
Confidence 0011 134677788899997541 1467999999999999
Q ss_pred HHHHHHHhhhhhhhhhhhc
Q 010538 487 DAKVNRCSSFDFVNFSQFL 505 (508)
Q Consensus 487 ev~~l~~~~~~~~~~~~~~ 505 (508)
||+++++++.+.++-++..
T Consensus 412 ~id~~~~~l~~~l~~~~~~ 430 (443)
T PRK08360 412 VLDEGLDILEEAIEDVEEG 430 (443)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999988766543
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.6e-12 Score=134.73 Aligned_cols=351 Identities=13% Similarity=0.097 Sum_probs=198.9
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCC-CCceEEE-cC
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASM-KDYKCIF-TS 110 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~-~~~~i~~-t~ 110 (508)
++..|+|..+. +--+|.+++++.++...... .... .. ......++-+++++.+..+. ....+.| ++
T Consensus 33 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~--~~~~-~~---~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~ 106 (412)
T TIGR02407 33 DGKEYIDFFAGAGALNYGHNNPKLKQALIDYLADDGI--IHSL-DM---ATEAKREFLETFNEIILKPRGLDYKVQFPGP 106 (412)
T ss_pred CCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhccc--eecc-cc---CcHHHHHHHHHHHHhccCccCCCceEEEeCC
Confidence 78899997443 56689999887665432111 1111 00 12233445566666542221 1014666 48
Q ss_pred ChHHHHHHHHhhcC-CCCCCeEEEecccccc-hHHHHHHHH----h--cC---CeEEEEccCCccCcccccccccccccc
Q 010538 111 GATAALKLVGEAFP-WSHQSSYMYTMENHNS-VLGIREYAL----S--QG---AAAFAIDVEEAVDNDGLSESLVTSTKI 179 (508)
Q Consensus 111 g~t~al~~~~~~l~-~~~g~~vl~~~~~h~s-~~~~~~~~~----~--~G---~~v~~v~~~~~~~~~~l~~~~~~~~~~ 179 (508)
++++|+..++.... ..+..+||.....|-+ ...+..... . .| ..+..+|.......+
T Consensus 107 sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~------------ 174 (412)
T TIGR02407 107 TGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGD------------ 174 (412)
T ss_pred CchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccc------------
Confidence 99999988776543 2344567665544333 333332210 0 11 122233322100000
Q ss_pred ccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCcccc-CHHHHHHHHcCCccccccCCCCCCCeEEEEecccc-CCCC
Q 010538 180 SLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRF-NLDLINIMKKNPERILEISPFSKGRWMVLIDAAKG-CVTQ 257 (508)
Q Consensus 180 ~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~-~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~-~g~~ 257 (508)
..+++.++ +.+.+.....+++..|++..+.+..|.+. |.+.+.++.+ +|+++|+++|+|++++ +|..
T Consensus 175 ~~~~~~l~--~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~---------lc~~~g~llI~DEV~tG~GRt 243 (412)
T TIGR02407 175 VDTIAYFE--KLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEK---------LCRRHDILLIVDDIQAGCGRT 243 (412)
T ss_pred hhHHHHHH--HHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHH---------HHHHcCCEEEEechhhCCCcc
Confidence 01244555 55532111114678888988999999855 4443333333 4445999999999986 3321
Q ss_pred ----CCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCC
Q 010538 258 ----PPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTA 331 (508)
Q Consensus 258 ----~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 331 (508)
..+......|++++| |+++ +.| +|+++++++. ..+.+...+ ...+.
T Consensus 244 G~~~a~~~~~v~PDi~~~~--K~lg-~~G~pigav~~~~~~-~~~~~~~~~------------------------~T~~g 295 (412)
T TIGR02407 244 GTFFSFEPAGIEPDIVCLS--KSIS-GYGLPLALTLIKPEL-DVWKPGEHN------------------------GTFRG 295 (412)
T ss_pred chhHHhcccCCCCCEEEec--hhcc-CCccceeEEEEchhh-hccCCCccC------------------------CCCCc
Confidence 122334467888765 9988 655 8999998875 433221110 01123
Q ss_pred ChhHHHHHHHHHHH-HHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCC
Q 010538 332 SFLSIASIRHGFNL-INSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGS 410 (508)
Q Consensus 332 ~~~~~~~l~~al~~-~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 410 (508)
|....++..++++. +.+ .++.++..++.+++.+.|+.+.. ..+.+ +..... .+.++++.+++.+
T Consensus 296 npl~~aaa~a~l~~~i~~---~~l~~~~~~~g~~l~~~l~~l~~--~~~~~-~~~vrg-------~Gl~~~l~l~~~~-- 360 (412)
T TIGR02407 296 NNLAFVTATAALEYYWSD---DAFEKAVQRKSEIIQERLDRIVA--EYPEL-IKQVRG-------RGLMQGIECGDGD-- 360 (412)
T ss_pred cHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHHHHh--hCCCc-eEeeec-------ceeEEEEEecChH--
Confidence 44555555667773 543 46778888888888888775421 00111 111111 2678888886531
Q ss_pred ccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHH
Q 010538 411 WFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKV 490 (508)
Q Consensus 411 ~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~ 490 (508)
....+.+.+.++||.+.+.. . .++.||+++...+|++|+++
T Consensus 361 --~~~~~~~~~~~~Gv~v~~~~---~----------------------------------~~~~lr~~p~l~~t~~~i~~ 401 (412)
T TIGR02407 361 --LAGKIAKAAFENGLIIETSG---P----------------------------------NDEVIKLLPPLTIDEETLQQ 401 (412)
T ss_pred --HHHHHHHHHHHCCCEEeccC---C----------------------------------CCCEEEEECCCCCCHHHHHH
Confidence 12347788889999986521 0 14689999999999999999
Q ss_pred HHHhhhhhhh
Q 010538 491 NRCSSFDFVN 500 (508)
Q Consensus 491 l~~~~~~~~~ 500 (508)
+++.+.+.++
T Consensus 402 ~~~~l~~~l~ 411 (412)
T TIGR02407 402 GLDILEQAVE 411 (412)
T ss_pred HHHHHHHHHh
Confidence 9999988764
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.9e-12 Score=130.50 Aligned_cols=321 Identities=15% Similarity=0.085 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccC
Q 010538 86 VRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVD 165 (508)
Q Consensus 86 ~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~ 165 (508)
+.+.++.+++++|.+. ++.|+++|.|++++.. +..++|++| +...|..... ......|+...-+..++-.+
T Consensus 80 ~~~LE~~vAe~lG~e~----aV~v~sGTaAl~ll~~-l~v~pGd~V--p~n~~f~Tt~--ahI~~~Ga~fvDi~~d~a~~ 150 (460)
T PRK13237 80 FYHLEETVQEYYGFKH----VVPTHQGRGAENLLSR-IAIKPGQYV--PGNMYFTTTR--YHQELNGGIFVDIIIDEAHD 150 (460)
T ss_pred HHHHHHHHHHHHCCCe----EEEeCCHHHHHHHHHH-hCCCCcCEE--CCccchHhhH--HHHHhCCcEEEeeecccccc
Confidence 5667899999999973 6899999999998754 447888865 3333322211 11344577544443221000
Q ss_pred ccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCC-ccccC---HHHHHHHHcCCccccccCCCCC
Q 010538 166 NDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFS-GSRFN---LDLINIMKKNPERILEISPFSK 241 (508)
Q Consensus 166 ~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~t-G~~~~---i~~i~~l~~~~~~~~~~~~~~~ 241 (508)
.. +.-+.....|+++++ ++|.+. ..+++.++.+...+|.. |...| ++++.++|++
T Consensus 151 ~~-----~~~p~tgnlD~d~Le--~~I~~~--~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~------------ 209 (460)
T PRK13237 151 AQ-----SDHPFKGNVDLDKLQ--ALIDEV--GAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDK------------ 209 (460)
T ss_pred cc-----cCCCCCCCcCHHHHH--HHhccc--cCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHH------------
Confidence 00 000111233799999 777532 12456667666667777 67775 5677777776
Q ss_pred CCeEEEEeccccCCC-----------CCCCCC----C--CCCcEEEEeccccccCCCcceEEEEech-hHhhhccccccC
Q 010538 242 GRWMVLIDAAKGCVT-----------QPPDLS----K--YPVDFVVMSFYKIFGYPTGLGALIMRND-AAKLLKNTYFSG 303 (508)
Q Consensus 242 ~g~~vivD~a~~~g~-----------~~~d~~----~--~~~D~~~~S~~K~~g~P~G~G~l~~~~~-~~~~l~~~~~g~ 303 (508)
+|+.||.|+++.+|. ...++. + ...|.+++|+||.++.|.| |++..+++ +.++++....-.
T Consensus 210 ~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~G-G~i~t~D~eL~~~~r~~~~~~ 288 (460)
T PRK13237 210 HGIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNIG-GFLAMNDEELFDEAKELVVVY 288 (460)
T ss_pred cCCEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCCc-eEEEECCHHHHHHHHHhcccc
Confidence 999999999998872 222221 1 1479999999997776766 88888764 444444331110
Q ss_pred ceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEE
Q 010538 304 GTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTI 383 (508)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~ 383 (508)
+.....|..+.-.+.+++.++....+ ....++-....+||.+.|.+. |+.+
T Consensus 289 -------------------eG~~tygg~~grd~~alAvgl~E~~~---~~y~~~ri~~~~~l~~~L~~~-------Gvpv 339 (460)
T PRK13237 289 -------------------EGMPSYGGMAGRDMEAMAIGIEESVQ---YEYIEHRVGQVRYLGEKLLAA-------GVPI 339 (460)
T ss_pred -------------------CCCcCCCChhhhHHHHHHhHHHhhch---HHHHHHHHHHHHHHHHHHHHC-------CCce
Confidence 00001222222335566655554322 255556667889999999886 7989
Q ss_pred ecCCCCCcccCCCCceEEEEe----eCCCCCccCHHHHHHHH-hhCCCeec-cCCCCCchHHHhhcCCChhhhhhhhhcC
Q 010538 384 YGTYTSEVSYHDTGSMVSFNL----KRPDGSWFGYREVEKLA-SLSGIQLR-TGCFCNPGACAKYLGLSHSDLLSNIEAG 457 (508)
Q Consensus 384 ~~~~~~~~~~~~~~~~v~~~~----~~~~~~~~~~~~l~~~L-~~~gI~v~-~g~~~~~~~~~~~~~~~~s~~~~~~~~~ 457 (508)
+.|.+ ++-+.++. ++.+..++....+...| .+.||.-. -|+......
T Consensus 340 ~~p~g--------gH~v~vda~~~lph~~~~~~p~~al~~~ly~~~GiR~~e~g~~~~~~~------------------- 392 (460)
T PRK13237 340 VEPVG--------GHAVFLDARRFLPHLPQDQFPAQALAAELYIESGVRSMERGIVSAGRD------------------- 392 (460)
T ss_pred ecCCC--------ceEEEEEhHHhCCCCCcccChHHHHHHHHHHHhCcCeEeecceecccC-------------------
Confidence 87754 67777763 45555555555555444 67788743 222211110
Q ss_pred CccCCCccccCCC--C--CceEEEecC-CCCCHHHHHHHHHhhhhhhhh
Q 010538 458 HVCWDDNDIIHGK--P--TGAIRVSFG-YMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 458 ~~~~~~~~~~~~~--~--~~~iRis~~-~~~t~eev~~l~~~~~~~~~~ 501 (508)
++ +++ . -..+|+++. ---|.+.+|.+++.+..+.+.
T Consensus 393 -----~~---~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~ 433 (460)
T PRK13237 393 -----PK---TGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKH 433 (460)
T ss_pred -----CC---CCccCCCccceeeeccccccccHHHHHHHHHHHHHHHHh
Confidence 00 011 1 257999987 334889999999998877543
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-12 Score=132.74 Aligned_cols=166 Identities=16% Similarity=0.119 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEEccCCcc
Q 010538 86 VRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDVEEAV 164 (508)
Q Consensus 86 ~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~~~~~ 164 (508)
...+.+.++.+-|++.. ++ .+++..|+..++..+ .+.|+.|++...-|......++ ...+.|++...++.+.
T Consensus 79 ~~~le~~iaal~ga~~~---l~-fsSGmaA~~~al~~L-~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~~~-- 151 (409)
T KOG0053|consen 79 RDVLESGIAALEGAAHA---LL-FSSGMAAITVALLHL-LPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDVDD-- 151 (409)
T ss_pred hHHHHHHHHHHhCCceE---EE-ecccHHHHHHHHHHh-cCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeechhh--
Confidence 45567889999998754 44 455555888888877 5888999988877777766654 5567899999988753
Q ss_pred CccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCe
Q 010538 165 DNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRW 244 (508)
Q Consensus 165 ~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~ 244 (508)
++.++ +++ .++|++|++.++.||+..+.|+++|.++||+ +|+
T Consensus 152 ------------------~~~~~--~~i------~~~t~~V~~ESPsNPll~v~DI~~l~~la~~------------~g~ 193 (409)
T KOG0053|consen 152 ------------------LKKIL--KAI------KENTKAVFLESPSNPLLKVPDIEKLARLAHK------------YGF 193 (409)
T ss_pred ------------------HHHHH--Hhh------ccCceEEEEECCCCCccccccHHHHHHHHhh------------CCC
Confidence 45556 333 5689999999999999999999999999998 999
Q ss_pred EEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEe-chhHhhhc
Q 010538 245 MVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMR-NDAAKLLK 297 (508)
Q Consensus 245 ~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~-~~~~~~l~ 297 (508)
+|+||.+-+.+ .-.+.-..|+|+++.|..|+++|-.- .|.++++ +++..+++
T Consensus 194 ~vvVDnTf~~p-~~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~ 248 (409)
T KOG0053|consen 194 LVVVDNTFGSP-YNQDPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLK 248 (409)
T ss_pred EEEEeCCcCcc-cccChhhcCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHH
Confidence 99999998766 33555566899999999999994433 4777775 55554443
|
|
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.9e-13 Score=128.83 Aligned_cols=354 Identities=16% Similarity=0.080 Sum_probs=228.3
Q ss_pred CCCCCCCHHHHHHHHHHhhcccc--CCCCCccchhhhhhHHHHH-HHHHHHHHcCCCCCCceEEEc--CChHHHHHHHHh
Q 010538 47 AGATLYSELQMEAIFRDFTTNVY--GNPHSQSDISLATCDIVRA-AREQVLDYFNASMKDYKCIFT--SGATAALKLVGE 121 (508)
Q Consensus 47 ~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~r~~la~~~~~~~~~~~i~~t--~g~t~al~~~~~ 121 (508)
++-...+..|++++ -..+.+.| +.|+..|+.|.++.+..+. ++++..+.|+++|+. +-+-+ -+++-|+-.+..
T Consensus 47 aSENFts~aVmeAl-GS~ltNKYSEGyPG~RYYGGne~ID~iE~LCq~RALeaF~ldp~k-WGVNVQp~SGSPANfavYt 124 (477)
T KOG2467|consen 47 ASENFTSRAVMEAL-GSCLTNKYSEGYPGARYYGGNEYIDQIELLCQKRALEAFGLDPEK-WGVNVQPYSGSPANFAVYT 124 (477)
T ss_pred ecccchHHHHHHHH-hHHhhcccccCCCcccccCcchHHHHHHHHHHHHHHHHhCCCHHH-CceeeccCCCCchhhHHHh
Confidence 45556677888876 44556665 6788888888888777776 666788999998874 32222 355668888999
Q ss_pred hcCCCCCCeEEEecccccchH---HHHHHHHhcCCeEEE-----Ecc--CC-ccCccccccccccccccccchhhhhcCC
Q 010538 122 AFPWSHQSSYMYTMENHNSVL---GIREYALSQGAAAFA-----IDV--EE-AVDNDGLSESLVTSTKISLLPIQRRKGA 190 (508)
Q Consensus 122 ~l~~~~g~~vl~~~~~h~s~~---~~~~~~~~~G~~v~~-----v~~--~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~ 190 (508)
++ .+++++|+--+.-|...+ ..... ..+.... .|. +. .+.+ |.+++++
T Consensus 125 al-l~Ph~RiMGLDLP~GGHLsHGy~T~~---kkISa~SiyFeSmPYkv~~~TG~I---------------DYD~Le~-- 183 (477)
T KOG2467|consen 125 AL-LKPHERIMGLDLPSGGHLSHGYQTPT---KKISATSIYFESMPYKVDPSTGYI---------------DYDKLEK-- 183 (477)
T ss_pred hh-cCCCCeeeeccCCCCCccccccccCC---ceeeeeeeecccCceeeCCCCCce---------------ehHHHHH--
Confidence 98 788899887654443322 11110 1111111 122 32 3445 5778873
Q ss_pred CCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEecccc-----CCCCCCCCCCCC
Q 010538 191 SFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKG-----CVTQPPDLSKYP 265 (508)
Q Consensus 191 ~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~-----~g~~~~d~~~~~ 265 (508)
. +..=++++++.- .+..-..+|...+.++|.+ .|++++.|.+|- .|.+|-++..
T Consensus 184 ~-----A~~frPk~iiaG--~SaY~R~~DYaR~R~Iad~------------~gA~Lm~DMAHISgLVAA~vipsPFey-- 242 (477)
T KOG2467|consen 184 T-----ATLFRPKLIIAG--TSAYSRLIDYARFRKIADK------------VGAYLMADMAHISGLVAAGVIPSPFEY-- 242 (477)
T ss_pred H-----HHhcCCcEEEec--cccchhhccHHHHHHHHHh------------cCceeehhhhhHHHHHhcccCCCcccc--
Confidence 2 123356777643 3455678999999999998 899999999985 4566666664
Q ss_pred CcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEec-ccchhhhhhccCccccccCCCCChhHHHHHHHHHH
Q 010538 266 VDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAAS-IADIDFVKRRQGVEELFEDGTASFLSIASIRHGFN 344 (508)
Q Consensus 266 ~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~ 344 (508)
+|+++++.||.+-||.| |+++.++.... ..+. .+..+.+. .+...|.. --... |.|.-..+.+++.||+
T Consensus 243 ~DiVTTTTHKsLRGPRg-~mIFyRkGvk~-~~~k--~g~~i~ydlE~kINfaV-----FP~lQ-GGPHNhtIaalAvALk 312 (477)
T KOG2467|consen 243 CDIVTTTTHKSLRGPRG-AMIFYRKGVKS-IKPK--QGKEILYDLEDKINFAV-----FPGLQ-GGPHNHTIAALAVALK 312 (477)
T ss_pred cceeeccccccccCCcc-eeEEEeccCCc-CCCC--CCCcceechhhhhhhhc-----ccccc-CCCCcchHHHHHHHHH
Confidence 99999999998777997 88888775421 1111 01111111 11111110 11122 3444466889999998
Q ss_pred HHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhC
Q 010538 345 LINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLS 424 (508)
Q Consensus 345 ~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~ 424 (508)
.-..-.+...++++.++++.|.+.|.+. |+++++..++ .++|.+++... .++...+.+.|+.-
T Consensus 313 Qa~tpefk~Yq~qV~~Nakala~~l~~~-------Gy~lvtgGTD-------nHlvLvDLr~~---G~dGarvE~vle~~ 375 (477)
T KOG2467|consen 313 QAMTPEFKEYQKQVLKNAKALASALISR-------GYKLVTGGTD-------NHLVLVDLRPK---GVDGARVEKVLELC 375 (477)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHHHHc-------CceEecCCcc-------ceEEEEecccc---CCchHHHHHHHHHh
Confidence 7666678999999999999999999887 8999987665 67777776532 14445588888887
Q ss_pred CCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCC----HHHHHHHHHhhhhhhh
Q 010538 425 GIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMST----FEDAKVNRCSSFDFVN 500 (508)
Q Consensus 425 gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t----~eev~~l~~~~~~~~~ 500 (508)
+|...--. |.... ....++.||+..-..+| ++|.+++++.|..-++
T Consensus 376 ~I~~NKNt-vpGD~-----------------------------Sal~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av~ 425 (477)
T KOG2467|consen 376 HIALNKNT-VPGDK-----------------------------SALSPGGIRIGTPAMTSRGFGEEDFEKVADFIDRAVK 425 (477)
T ss_pred hhhhcCCc-CCCCc-----------------------------cccCCCceeccchhhcccCccHHHHHHHHHHHHHHHH
Confidence 88754322 11111 12358899998776664 6777777777666555
Q ss_pred h
Q 010538 501 F 501 (508)
Q Consensus 501 ~ 501 (508)
+
T Consensus 426 i 426 (477)
T KOG2467|consen 426 I 426 (477)
T ss_pred H
Confidence 4
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.1e-13 Score=139.89 Aligned_cols=352 Identities=11% Similarity=0.075 Sum_probs=207.4
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+ .+--+|.+++++.+++. .... .+.+. ......++.+++++++....+ .+.|++++
T Consensus 80 dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~-~l~~--~~~~~----~~~~~~~lae~L~~~~p~~~~--~v~f~~SG 150 (459)
T PRK11522 80 QGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLA-KQPL--HSQEL----LDPLRAMLAKTLAALTPGKLK--YSFFCNSG 150 (459)
T ss_pred CCCEEEECCcCHHhhhcCCCCHHHHHHHHHHHh-hCcc--ccccc----CCHHHHHHHHHHHHhCCCCCC--EEEEeCCc
Confidence 5778899743 35557889888766543 2211 11111 123345556667777654445 79999999
Q ss_pred HHHHHHHHhhcC-CC---CCCeEEEecccccc-hHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhh
Q 010538 113 TAALKLVGEAFP-WS---HQSSYMYTMENHNS-VLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRR 187 (508)
Q Consensus 113 t~al~~~~~~l~-~~---~g~~vl~~~~~h~s-~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~ 187 (508)
|+|+..++.... .. ....||.....|-. ..............-...|.-..... .+ -.|.+.++
T Consensus 151 sEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~--------~~---~~d~~~l~ 219 (459)
T PRK11522 151 TESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRH--------VP---FGNIEAMR 219 (459)
T ss_pred hHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcc--------cC---CCCHHHHH
Confidence 999988776442 11 13456666543333 22222211000000000111000000 00 01344444
Q ss_pred cCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecccc-CCCCC----
Q 010538 188 KGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKG-CVTQP---- 258 (508)
Q Consensus 188 ~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~-~g~~~---- 258 (508)
+.+++.....+++..|++..+....|.+.| ++++.++|++ +|+++|+|++|. +|..-
T Consensus 220 --~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~------------~g~llI~DEV~tG~GRtG~~~a 285 (459)
T PRK11522 220 --TALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDE------------FGALLILDEVQTGMGRTGKMFA 285 (459)
T ss_pred --HHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHH------------cCCEEEeccceecCCccchhhh
Confidence 433211112356788999999999999998 7788888887 999999999985 33211
Q ss_pred CCCCCCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCC--ChhH
Q 010538 259 PDLSKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTA--SFLS 335 (508)
Q Consensus 259 ~d~~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~--~~~~ 335 (508)
.+......|+++++ |.+|+- ..+|.++++++..+.+... . ....+|. |...
T Consensus 286 ~e~~gv~PDivt~g--K~lggG~~Pigav~~~~~i~~~~~~~-----------------------~-~~~~~T~~gnp~~ 339 (459)
T PRK11522 286 CEHENVQPDILCLA--KALGGGVMPIGATIATEEVFSVLFDN-----------------------P-FLHTTTFGGNPLA 339 (459)
T ss_pred hhccCCCCCEEEec--hhhhCCCccceeEEEcHHHHHHhccC-----------------------C-cccCCCCCCCHHH
Confidence 11112247888664 977731 1178999988876543211 0 0112333 5666
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEE-EecCCCCCcccCCCCceEEEEeeCCCCCccCH
Q 010538 336 IASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCT-IYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGY 414 (508)
Q Consensus 336 ~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 414 (508)
.++..++++.+.+ +++.++..++.++|.+.|+++.. ... ++..-.. .+.++.+.+.+.+. .
T Consensus 340 ~Aaala~L~~i~~---~~l~~~~~~~g~~l~~~L~~l~~-----~~~~~i~~VrG------~Gl~~giel~~~~~----~ 401 (459)
T PRK11522 340 CAAALATINVLLE---QNLPAQAEQKGDYLLDGFRQLAR-----EYPDLVQEARG------KGMLMAIEFVDNEI----G 401 (459)
T ss_pred HHHHHHHHHHHhc---chHHHHHHHHHHHHHHHHHHHHH-----hCCCceeeEEe------ceeEEEEEecCchH----H
Confidence 7777778888765 35778999999999999987621 111 1111111 26788888754311 2
Q ss_pred HHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHh
Q 010538 415 REVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCS 494 (508)
Q Consensus 415 ~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~ 494 (508)
..+.+.|.++||.+.+.. . ....+|+.+....|++|++++++.
T Consensus 402 ~~i~~~l~~~Gvl~~~~~---~----------------------------------~~~~lr~~Ppl~~t~~~id~~l~~ 444 (459)
T PRK11522 402 YNFASEMFRQRVLVAGTL---N----------------------------------NAKTIRIEPPLTLTIEQCEQVLKA 444 (459)
T ss_pred HHHHHHHHHCCeEEEecC---C----------------------------------CCCEEEEECCccCCHHHHHHHHHH
Confidence 347788888999986421 0 147899999999999999999999
Q ss_pred hhhhhhhhhhc
Q 010538 495 SFDFVNFSQFL 505 (508)
Q Consensus 495 ~~~~~~~~~~~ 505 (508)
+.+.++-+...
T Consensus 445 l~~~l~~~~~~ 455 (459)
T PRK11522 445 ARKALAAMRVS 455 (459)
T ss_pred HHHHHHHHHHh
Confidence 99887665543
|
|
| >KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-12 Score=122.89 Aligned_cols=349 Identities=15% Similarity=0.136 Sum_probs=230.6
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCC-C---ccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEc-CChH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPH-S---QSDISLATCDIVRAAREQVLDYFNASMKDYKCIFT-SGAT 113 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t-~g~t 113 (508)
+..+.|..+ ...+|.+|+..+.++++. |.+.+ + ....+.....+++.+...+.+++++|.. |+|+|. .|+|
T Consensus 6 ~~vvnFaaG-PAklp~~VL~e~qkdl~n--~~g~GisV~EmSHRsk~f~kii~~tes~lreLlniPdn-~~vlf~QGGGt 81 (370)
T KOG2790|consen 6 ERVVNFAAG-PAKLPESVLLEAQKDLLN--FNGSGISVMEMSHRSKDFAKIINDTESLLRELLNIPDN-YKVLFLQGGGT 81 (370)
T ss_pred cceeecCCC-cccCCHHHHHHHHHHhhc--cCCCcceEEEecccchhHHHHHHHHHHHHHHHHcCCCc-eeEEEEeCCCc
Confidence 456677644 445688898888777753 22222 1 1233456778899999999999999765 688877 4555
Q ss_pred HHHHHHHhhcC-CCCC---CeEEEecccccchHHHHHHHHhcCCeEEEEc-cCCc--cCccccccccccccccccchhhh
Q 010538 114 AALKLVGEAFP-WSHQ---SSYMYTMENHNSVLGIREYALSQGAAAFAID-VEEA--VDNDGLSESLVTSTKISLLPIQR 186 (508)
Q Consensus 114 ~al~~~~~~l~-~~~g---~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~-~~~~--~~~~~l~~~~~~~~~~~~d~~~l 186 (508)
..+..+...+. .+.| +.|++..... ...+-++++|..-..++ .... +.+ ||.+.+
T Consensus 82 ~qFaAv~lNL~glK~g~~AdYiVTGsWS~----KA~~EAkk~~~~~~V~~~~k~y~ygkv--------------Pd~~~w 143 (370)
T KOG2790|consen 82 GQFAAVPLNLIGLKHGRCADYVVTGSWSA----KAAEEAKKYGTPNIVIPKLKSYTYGKV--------------PDPSTW 143 (370)
T ss_pred ccccccchhhhccccCCccceEEeccccH----HHHHHHHhhCCceEEeccccccccCcC--------------CChhhc
Confidence 54444433332 2333 5677665433 23344556665433333 3222 233 244555
Q ss_pred hcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCC
Q 010538 187 RKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPV 266 (508)
Q Consensus 187 ~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~ 266 (508)
+ .+++.+.|..+...+.-|.-+|.-.+ -. .+|++++.|...-+-..|+|+++ .
T Consensus 144 ~----------~~~da~yvyyCaNETVHGVEf~~~P~---~~------------~~~~vlVaDmSSnflSrpvDvsk--~ 196 (370)
T KOG2790|consen 144 E----------LNPDASYVYYCANETVHGVEFDFIPV---ND------------PKGAVLVADMSSNFLSRPVDVSK--F 196 (370)
T ss_pred c----------cCCCccEEEEecCceeeceecCCCCC---CC------------CCCceEEEecccchhcCCccchh--c
Confidence 5 35666889988888888987775442 12 27999999999999999999998 5
Q ss_pred cEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHH
Q 010538 267 DFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLI 346 (508)
Q Consensus 267 D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~ 346 (508)
++++++.+|..| |.|+.+++++++++....+..+.- .+|..+ .....-..||+..+++.+.-.++|+
T Consensus 197 gvi~aGAQKN~G-~aG~Tvvivr~dllg~~~~~tP~v---------~dyk~~---~~NnSlyNTpP~f~iy~~~Lv~~~i 263 (370)
T KOG2790|consen 197 GVIFAGAQKNVG-PAGVTVVIVRKDLLGNALDITPSV---------LDYKIM---DKNNSLYNTPPCFGIYVMGLVFEWI 263 (370)
T ss_pred ceEEeccccccC-ccccEEEEEehhhhcccccCCccc---------cceeee---ccccccccCCCeeeeeehhhHHHHH
Confidence 688999999999 999999999999987654432111 111111 1223334688999999999999988
Q ss_pred Hh-cChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCC
Q 010538 347 NS-LTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSG 425 (508)
Q Consensus 347 ~~-~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~g 425 (508)
.+ .|+..+.+...+.++.+.+.+.+.. |+-. .|-.++ .|+-.-|.|++.+. ++....+.+..+++=
T Consensus 264 l~~GGl~a~e~~n~~KskllYd~iD~s~------gfy~-cpVe~~---~RS~MNV~Fri~~d---~Le~eFLkeA~~~~m 330 (370)
T KOG2790|consen 264 LEKGGLAAMEKLNQEKSKLLYDAIDNSN------GFYR-CPVEPS---VRSRMNVPFRIEKD---ELEAEFLKEAAKEHM 330 (370)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHhcC------CeEE-cccchh---hhhhcccceeecch---HHHHHHHHHHHHhhh
Confidence 76 5789999999999999999998863 3322 222221 24467788888642 233333444444333
Q ss_pred CeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 426 IQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 426 I~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
+.+. | .+.-|.+|.|+-...+.+++.+|+..|++|.+
T Consensus 331 v~LK-G-------------------------------------hRSVGGiRASlYNAisv~~~q~L~~~m~~F~k 367 (370)
T KOG2790|consen 331 VQLK-G-------------------------------------HRSVGGIRASLYNAISVEEVQKLAAFMKEFQK 367 (370)
T ss_pred hccc-c-------------------------------------ccccccchhhhhccccHHHHHHHHHHHHHHHH
Confidence 3332 2 13468899999999999999999999998865
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.6e-12 Score=134.64 Aligned_cols=358 Identities=11% Similarity=0.072 Sum_probs=207.0
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+. |--+|.+.+++.++.. .....+...+ ......++.+++++++.-..+ .+.|++++
T Consensus 41 dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~-~~~~~~~~~~-----~~~~~~~la~~L~~~~~~~~~--~v~f~~SG 112 (433)
T PRK08117 41 DGKEYLDFTSGIAVANVGHRHPKVVQAIKEQAD-KLMHGPSGVI-----YYESILKLAEELAEITPGGLD--CFFFSNSG 112 (433)
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHH-hccCcccccc-----CCHHHHHHHHHHHHhCCCCCC--EEEEeCcH
Confidence 67889997554 2357888888766542 2111111111 223456677788888743344 79999999
Q ss_pred HHHHHHHHhhcC-CCCCCeEEEec-ccccchHHHHHHHH----h---cC---CeEEEEccCCccCc-ccccccccccccc
Q 010538 113 TAALKLVGEAFP-WSHQSSYMYTM-ENHNSVLGIREYAL----S---QG---AAAFAIDVEEAVDN-DGLSESLVTSTKI 179 (508)
Q Consensus 113 t~al~~~~~~l~-~~~g~~vl~~~-~~h~s~~~~~~~~~----~---~G---~~v~~v~~~~~~~~-~~l~~~~~~~~~~ 179 (508)
++|+..++.... ..+...|+... .-|......+.... . .+ ..+..+|....... ... ......
T Consensus 113 seA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 188 (433)
T PRK08117 113 AEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGE----DPEVCF 188 (433)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccC----chhHHH
Confidence 999988776532 22334555554 44544444322110 0 00 11233333211000 000 000000
Q ss_pred ccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEeccccC-
Q 010538 180 SLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC- 254 (508)
Q Consensus 180 ~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~- 254 (508)
..+++.++ +.+++ ....+++..|++..+....|.+.| ++++.++|++ ||+++|+|++|+.
T Consensus 189 ~~~~~~l~--~~~~~-~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~------------~g~llI~DEv~tG~ 253 (433)
T PRK08117 189 LECLRDLE--SLFKH-QVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDR------------HGILLIFDEVQTGF 253 (433)
T ss_pred HHHHHHHH--HHHHh-ccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHH------------cCCEEEEecchhcc
Confidence 01334444 33321 011346889999999999999998 8888888887 9999999999873
Q ss_pred CCC--CCCCCCC--CCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccC
Q 010538 255 VTQ--PPDLSKY--PVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFED 328 (508)
Q Consensus 255 g~~--~~d~~~~--~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (508)
|.. .+..... ..|+ .++.|.++ + | +|++++++++.+.+.....+. .
T Consensus 254 gr~G~~~~~~~~gv~pDi--~t~sK~lg-~-G~pigav~~~~~i~~~~~~~~~~~------------------------T 305 (433)
T PRK08117 254 GRTGEWFAAQTFGVVPDI--MTIAKGIA-S-GLPLSAVVASKELMEQWPLGSHGT------------------------T 305 (433)
T ss_pred CccccchhHhhcCCCCCE--eehhhhcc-C-CCcceeEEEcHHHHhhccCCCCCC------------------------C
Confidence 111 1111122 3566 46679888 4 4 799999988876553221100 0
Q ss_pred CCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCC
Q 010538 329 GTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPD 408 (508)
Q Consensus 329 gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 408 (508)
.+.|...+++..++++.+.+ +.+.+++.++.+++.+.|+++.. ...++.... -.+.++.+.+.+.+
T Consensus 306 ~~~np~~~aaa~a~L~~l~~---~~l~~~~~~~g~~l~~~L~~l~~-----~~~~~~~vr------g~Gl~~gi~~~~~~ 371 (433)
T PRK08117 306 FGGNPVACAAALATLEVIKE---EKLLDNANEMGAYALERLEVLKE-----KHPVIGDVR------GIGLMIGIEIVDPD 371 (433)
T ss_pred CCcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHh-----cCCceeeee------cCCcEEEEEEecCC
Confidence 12355667777778887654 35677888888999888877521 111111111 12556666664322
Q ss_pred C--CccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHH
Q 010538 409 G--SWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFE 486 (508)
Q Consensus 409 ~--~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~e 486 (508)
. ..-....+.+.+.++||.+.+.. . ..+.+|+++...+|.+
T Consensus 372 ~~~~~~~~~~~~~~l~~~Gv~~~~~g---~----------------------------------~~~~lRl~p~~~~t~~ 414 (433)
T PRK08117 372 GEPDGDAVEKILDKCLEKGLLFYLCG---N----------------------------------AGNVLRMIPPLTVTKE 414 (433)
T ss_pred CCcchHHHHHHHHHHHHCCCEEeecC---C----------------------------------CCCEEEEeCCccCCHH
Confidence 1 11112346778888999875410 0 1468999999999999
Q ss_pred HHHHHHHhhhhhhhhh
Q 010538 487 DAKVNRCSSFDFVNFS 502 (508)
Q Consensus 487 ev~~l~~~~~~~~~~~ 502 (508)
||+++++.+.+.++-+
T Consensus 415 ~i~~~~~~l~~~l~~~ 430 (433)
T PRK08117 415 EIDEGLDILDEALTEY 430 (433)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998877543
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.4e-15 Score=149.44 Aligned_cols=253 Identities=15% Similarity=0.138 Sum_probs=165.8
Q ss_pred CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeE
Q 010538 52 YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSY 131 (508)
Q Consensus 52 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~v 131 (508)
++|.+++++.+.... +. ++.......++++.+++++|.+. .+|++++|.|+.++++++. ++++.|
T Consensus 7 ~~~~m~~a~~~a~~g----d~------~Yg~D~~~~~l~~~i~~l~g~e~----a~f~~sGT~An~~al~~~~-~~~~~v 71 (290)
T PF01212_consen 7 PTPAMLEAMAAANVG----DD------AYGEDPTTARLEERIAELFGKEA----ALFVPSGTMANQLALRAHL-RPGESV 71 (290)
T ss_dssp S-HHEEHHHHHTTSB-----C------CTTSSHHHHHHHHHHHHHHTSSE----EEEESSHHHHHHHHHHHHH-HTTEEE
T ss_pred CCHHHHHHHHccccC----Cc------ccCCChhHHHHHHHHHHHcCCCE----EEEeCCCChHHHHHHHHHH-hcCCce
Confidence 678888887442211 11 22345668889999999999974 4699999999999999995 889999
Q ss_pred EEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCC
Q 010538 132 MYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSEC 211 (508)
Q Consensus 132 l~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~ 211 (508)
++....|......-......|.++..++.+..+.+ ++++++ +++.+.....+++++|+++..+
T Consensus 72 i~~~~aHi~~~E~ga~~~~~G~~~~~l~~~~~G~l---------------~~~~l~--~~~~~~~~h~~~~~~v~le~t~ 134 (290)
T PF01212_consen 72 ICADTAHIHFDETGAIEELSGAKLIPLPSDDDGKL---------------TPEDLE--AAIEEHGAHHPQPAVVSLENTT 134 (290)
T ss_dssp EEETTEHHHHSSTTHHHHHTTCEEEEEBECTGTBB----------------HHHHH--HHHHHHTGTSGGEEEEEEESSB
T ss_pred eccccceeeeeccchhhHhcCcEEEECCCcccCCC---------------CHHHHH--HHhhhccccCCCccEEEEEecC
Confidence 99988776554432222347999999988765777 688888 6664422234679999999977
Q ss_pred CCC-ccccCHHHHHHHHcCCccccccCCCCCCCeEEEEecccc------CCCCCCCCCCCCCcEEEEeccccccCCCcce
Q 010538 212 NFS-GSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKG------CVTQPPDLSKYPVDFVVMSFYKIFGYPTGLG 284 (508)
Q Consensus 212 n~t-G~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~------~g~~~~d~~~~~~D~~~~S~~K~~g~P~G~G 284 (508)
+.. |+++++++|.++++ +|+++|+.+++||+-- .+..+-++. ..+|.+++|++|.+|.|.| +
T Consensus 135 ~~~GG~~~s~~el~ai~~---------~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~-~~~D~v~~~~tK~~g~~~G-a 203 (290)
T PF01212_consen 135 ELAGGTVYSLEELRAISE---------LAREHGLPLHMDGARLANAAAALGVSLAEIA-AGADSVSFGGTKNGGAPGG-A 203 (290)
T ss_dssp TTTTSB---HHHHHHHHH---------HHHHHT-EEEEEETTHHHHHCHHHHHHHHHH-TTSSEEEEETTSTT-SSSE-E
T ss_pred cCCCCeeCCHHHHHHHHH---------HHHhCceEEEEehhhHHHhhhcccccHHHHh-hhCCEEEEEEEcccccccc-e
Confidence 754 99999888888777 6777999999999842 233333333 2699999999998886765 8
Q ss_pred EEEEechhHhhhcccc--ccCceEEecccchhhhhhccCccccccCCCCChhHHHH--HHHHHHHHHhcChHHHHHHHHH
Q 010538 285 ALIMRNDAAKLLKNTY--FSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIAS--IRHGFNLINSLTVPAICRHIAS 360 (508)
Q Consensus 285 ~l~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--l~~al~~~~~~g~~~i~~~~~~ 360 (508)
+|+++++++++..... .|++. ...| ++.... ...++..+ +.+ .....+-.+
T Consensus 204 vl~~~~~~i~~~~~~~k~~gg~~--------------------~~~G---~~~a~~~~~~~~l~~l-~~~-~~~~~~~~~ 258 (290)
T PF01212_consen 204 VLAGNKEFIAKARRQRKRLGGGM--------------------RQAG---VLAAAELYQFAALRAL-ELW-LERARHANA 258 (290)
T ss_dssp EEEESHHHHHHHHHHHHHHTHHH--------------------HHTT---HHHHHHHHHHHHHCHE-ECS-HHHHHCHHH
T ss_pred EEEechHHHHHHHHHHHHhccCe--------------------eecc---eeeeechhhHHHHHHH-Hhh-HHHHHHHHH
Confidence 8889998766433221 12110 0111 111100 11222221 222 556677788
Q ss_pred HHHHHHHHHhcc
Q 010538 361 LGMYVRKVLLSL 372 (508)
Q Consensus 361 l~~~l~~~L~~l 372 (508)
.+++|.+.|+.+
T Consensus 259 ~A~~La~~l~~~ 270 (290)
T PF01212_consen 259 MAKRLAAGLEAL 270 (290)
T ss_dssp HHHCHHHCHHEE
T ss_pred HHHHHHHHHHHC
Confidence 899999999998
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-12 Score=133.82 Aligned_cols=337 Identities=12% Similarity=0.058 Sum_probs=193.5
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+ .+--+|.+++++.++.. .. ......+. .....++-+++++..+ .+ .+.|++++
T Consensus 13 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~-~~-~~~~~~~~-----~~~~~~la~~l~~~~~--~~--~v~f~~sG 81 (382)
T PLN00144 13 EGKEYLDMAAGIAVNALGHGDPDWVKAVAEQAG-TL-AHVSNVYH-----TIPQVELAKRLVASSF--AD--RVFFCNSG 81 (382)
T ss_pred CCCEEEECCcCHHhccCCCCCHHHHHHHHHHHH-hc-CCcccccc-----CHHHHHHHHHHHhcCC--CC--eEEEeCCc
Confidence 6788999733 34558888888766553 21 11111111 1223344455556543 34 79999999
Q ss_pred HHHHHHHHhhcC-CC-------C------CCeEEEeccc-ccchHHHHHHHHhcCCeEEEEccCCccCcccccccccccc
Q 010538 113 TAALKLVGEAFP-WS-------H------QSSYMYTMEN-HNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTST 177 (508)
Q Consensus 113 t~al~~~~~~l~-~~-------~------g~~vl~~~~~-h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~ 177 (508)
|+|+..++.... .. + ..+|+..... |................-...|....... .+
T Consensus 82 seA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~--------~~- 152 (382)
T PLN00144 82 TEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTF--------VE- 152 (382)
T ss_pred HHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEE--------eC-
Confidence 999987766431 11 0 2456665543 33333322211000000000010000000 00
Q ss_pred ccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecccc
Q 010538 178 KISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKG 253 (508)
Q Consensus 178 ~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~ 253 (508)
-.|++.++ +.+. ..+++.|++..++++.|...+ .++|.++|++ ||+++|+|++++
T Consensus 153 --~~d~~~l~--~~~~-----~~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~------------~g~llI~DEv~t 211 (382)
T PLN00144 153 --YGNLEAAR--KLIQ-----KGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDE------------AGALLVFDEVQC 211 (382)
T ss_pred --CCCHHHHH--HhcC-----CCCeEEEEEccccCCCCCccCCHHHHHHHHHHHHH------------cCCEEEEechhh
Confidence 01467777 5553 245678888777888444332 4455666665 999999999987
Q ss_pred C-CCCC--C--CCCCCCCcEEEEeccccccCCC-cceEEEEechhHhhhccccccCceEEecccchhhhhhccCcccccc
Q 010538 254 C-VTQP--P--DLSKYPVDFVVMSFYKIFGYPT-GLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFE 327 (508)
Q Consensus 254 ~-g~~~--~--d~~~~~~D~~~~S~~K~~g~P~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (508)
. |... + +......|+ .++.|.++ |+ -+|++++++++.+.+.+...+ .
T Consensus 212 g~gr~g~~~~~~~~~~~PDi--~t~sK~l~-~G~pig~v~~~~~~~~~~~~~~~~------------------------~ 264 (382)
T PLN00144 212 GLGRTGYLWAHEAYGVEPDI--MTLAKPLA-GGLPIGAVLVTEKVASAINPGDHG------------------------S 264 (382)
T ss_pred CCCccchHhhhhhcCCCCCE--EEeccccc-CCcceEEEEEcHHHHhccCCCCCC------------------------C
Confidence 3 2221 1 233445784 45569887 52 189999998887665542111 0
Q ss_pred CCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceE-EEecCCCCCcccCCCCceEEEEeeC
Q 010538 328 DGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVC-TIYGTYTSEVSYHDTGSMVSFNLKR 406 (508)
Q Consensus 328 ~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~ 406 (508)
....+....++..++++++.+ ..+.+++.++.+++.+.|+++.. ..+.+ .+.+ .+.++++.+.
T Consensus 265 T~~~~pl~~aaa~a~l~~i~~---~~~~~~~~~~g~~l~~~l~~~~~--~~~~~~~vrg----------~G~~~~l~l~- 328 (382)
T PLN00144 265 TFAGGPLVCNAALAVLDKISK---PGFLASVAKKGEYLRELLRRKLG--GNPHVKEVRG----------VGLLVGIQLD- 328 (382)
T ss_pred CCCCCHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHHHh--hCCCceeeec----------CceEEEEEec-
Confidence 112344556666778888865 45567777777777777765411 00111 1111 2788888883
Q ss_pred CCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHH
Q 010538 407 PDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFE 486 (508)
Q Consensus 407 ~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~e 486 (508)
... ..+...+.++||.+.++. ..+.||+++..-.|++
T Consensus 329 ~~~-----~~~~~~~~~~Gv~i~~~~--------------------------------------~~~~lrl~p~~~~~~~ 365 (382)
T PLN00144 329 VPA-----GPLVDACRDSGLLVLTAG--------------------------------------KGDVVRLVPPLVISEA 365 (382)
T ss_pred Ccc-----HHHHHHHHHCCeEEeecC--------------------------------------CCCEEEEeCCCccCHH
Confidence 222 347888889999997641 1368999999888899
Q ss_pred HHHHHHHhhhhhhhhh
Q 010538 487 DAKVNRCSSFDFVNFS 502 (508)
Q Consensus 487 ev~~l~~~~~~~~~~~ 502 (508)
|++.+++.+.+.+..+
T Consensus 366 ~i~~~~~~l~~~l~~~ 381 (382)
T PLN00144 366 ELEQAVEILADCLPAL 381 (382)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999887543
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.54 E-value=3e-12 Score=134.95 Aligned_cols=350 Identities=13% Similarity=0.045 Sum_probs=191.3
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+. |..+|.+++++.++.. +.. . +.. ......++++++++++... + .|.|++|+
T Consensus 46 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~-~~~---~--~~~---~~~~~~~lae~l~~~~~~~-~--~v~~~~sG 113 (423)
T TIGR00713 46 DGNEYIDYVLSWGPLILGHAHPRVVEAVKEALE-RGT---S--YGA---PTEAEILLAKEIISRVPSV-E--MVRFVNSG 113 (423)
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHH-hCC---c--CCC---CCHHHHHHHHHHHHhCCcc-c--EEEEeCCH
Confidence 67889997442 4567889888766543 211 1 110 1234567788888887653 4 79999999
Q ss_pred HHHHHHHHhhcC-CCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCC
Q 010538 113 TAALKLVGEAFP-WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGAS 191 (508)
Q Consensus 113 t~al~~~~~~l~-~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~ 191 (508)
++|+..++.... ..++++||+....|.....+.......+......|..... ...... .....--.|+++++ +.
T Consensus 114 seA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~d~~~l~--~~ 188 (423)
T TIGR00713 114 TEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGV-PEDFAK--LTLVLPYNDLEALE--EV 188 (423)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCC-Cccccc--ceEEeCCCCHHHHH--HH
Confidence 999998776531 2455788877755555432222111111111111111000 000000 00000001466776 55
Q ss_pred CCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC--C--CCCCC
Q 010538 192 FPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ--P--PDLSK 263 (508)
Q Consensus 192 l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~--~--~d~~~ 263 (508)
+.+. .++++.|++....+.+|.+.| +++|.++|++ +|+++|+|++|..-.. . .....
T Consensus 189 i~~~---~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~------------~~~llI~DEv~~g~r~g~~~~~~~~~ 253 (423)
T TIGR00713 189 FEEY---GEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEE------------YGSLLIFDEVMTGFRVALGGAQEYFG 253 (423)
T ss_pred HHHc---CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHH------------hCCEEEEEccccccccCcchhHHHhC
Confidence 5321 256788888655555899988 4566666665 9999999999853211 0 11112
Q ss_pred CCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHH
Q 010538 264 YPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRH 341 (508)
Q Consensus 264 ~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~ 341 (508)
...|++ +++|.++ + | +|++++++++.+.+.+. +. .........+...+++..+
T Consensus 254 ~~pDi~--t~sK~l~-~-G~pig~v~~~~~i~~~~~~~--~~-------------------~~~~~T~~~~~~~~aaa~a 308 (423)
T TIGR00713 254 VEPDLT--TLGKIIG-G-GLPVGAFGGRREIMERLAPE--GP-------------------VYQAGTLSGNPLAMAAGLA 308 (423)
T ss_pred CCcchh--hhhhhhc-C-CCceeeeeEHHHHHHhhCcC--CC-------------------eeeccCCCCCHHHHHHHHH
Confidence 235755 5779888 4 4 79999999887766531 00 0000111245555666667
Q ss_pred HHHHHHhcC-hHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCC------ccC-
Q 010538 342 GFNLINSLT-VPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGS------WFG- 413 (508)
Q Consensus 342 al~~~~~~g-~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~~- 413 (508)
+++.+.+.+ .+...+....+++.|.+.+++... ...+.+ .+.++.+.+...... ..+
T Consensus 309 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~v~~----------~g~~~~v~~~~~~~~~~~~~~~~~~ 373 (423)
T TIGR00713 309 TLKLLDEEGVYTELDELAKRLAEGLSEVLEDTGI-----PHTVNR----------VGSMFSLFFTEEEVTNYADAKKSDT 373 (423)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHhcCC-----CeEEEe----------eccEEEEEEecCCCCChhhhhcccH
Confidence 888776532 233344444444444444444310 011111 156666655421100 001
Q ss_pred --HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHH
Q 010538 414 --YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVN 491 (508)
Q Consensus 414 --~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l 491 (508)
...+.+.|.++||.+..+. .+.+|+++. .|.+|++.+
T Consensus 374 ~~~~~~~~~l~~~Gv~v~~~~---------------------------------------~~~~~l~~~--~t~~~i~~~ 412 (423)
T TIGR00713 374 ELFAKFFHEMLDKGVFLPPSQ---------------------------------------FEACFLSAA--HTEEDIENT 412 (423)
T ss_pred HHHHHHHHHHHHCCeEEecCC---------------------------------------ccceeeECC--CCHHHHHHH
Confidence 1246667778999986421 245788875 699999999
Q ss_pred HHhhhhhhhh
Q 010538 492 RCSSFDFVNF 501 (508)
Q Consensus 492 ~~~~~~~~~~ 501 (508)
++.+.++++.
T Consensus 413 ~~~l~~~l~~ 422 (423)
T TIGR00713 413 IEAAEEVFAE 422 (423)
T ss_pred HHHHHHHHhh
Confidence 9999887653
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-11 Score=129.33 Aligned_cols=351 Identities=12% Similarity=0.076 Sum_probs=198.0
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCC-CCceEEE-cC
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASM-KDYKCIF-TS 110 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~-~~~~i~~-t~ 110 (508)
++.-|+|..+ .|--+|.+.+++.+++..... .+.... ......++-+++++.+..+. .+..+.| ++
T Consensus 37 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~--~~~~~~----~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~ 110 (425)
T PRK09264 37 DGKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRDGI--THGLDM----HTTAKREFLETFEETILKPRGLDYKVQFTGP 110 (425)
T ss_pred CCCEeeecccchhhccCCCCCHHHHHHHHHHHHhccc--cccccc----CcHHHHHHHHHHHHhhcCCcCCCceEEEeCC
Confidence 7888999743 355588898887665532111 111100 11233445556666543221 1114666 48
Q ss_pred ChHHHHHHHHhhcC-CCCCCeEEEecccccc-hHHHHHHHH----h--cC---CeEEEEccCCccCcccccccccccccc
Q 010538 111 GATAALKLVGEAFP-WSHQSSYMYTMENHNS-VLGIREYAL----S--QG---AAAFAIDVEEAVDNDGLSESLVTSTKI 179 (508)
Q Consensus 111 g~t~al~~~~~~l~-~~~g~~vl~~~~~h~s-~~~~~~~~~----~--~G---~~v~~v~~~~~~~~~~l~~~~~~~~~~ 179 (508)
++++|+..++.... ..+..+||.....|-+ ......... + .+ ..+..+|......-+
T Consensus 111 sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~------------ 178 (425)
T PRK09264 111 TGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGD------------ 178 (425)
T ss_pred CHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccc------------
Confidence 99999988766542 2344566666543333 332222110 0 11 123334432100000
Q ss_pred ccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecccc-C
Q 010538 180 SLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKG-C 254 (508)
Q Consensus 180 ~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~-~ 254 (508)
..|++.++ +.+.+.....+++..|++..+....|.+.+ +++|.++|++ ||+++|+|++|+ +
T Consensus 179 ~~~~~~l~--~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~------------~g~llI~DEV~tG~ 244 (425)
T PRK09264 179 VDTLAYLE--KLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRK------------HDILLIVDDIQAGC 244 (425)
T ss_pred hhHHHHHH--HHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHH------------cCcEEEEechhhCC
Confidence 01345566 555321111246788999888888887653 5566666665 999999999986 2
Q ss_pred CCC----CCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccC
Q 010538 255 VTQ----PPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFED 328 (508)
Q Consensus 255 g~~----~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (508)
|.. ..+......|++++| |.++ +.| +|++++++++ ..+.+...+ ..
T Consensus 245 GrtG~~~~~~~~~v~PDi~t~~--K~l~-~~G~pigav~~~~~i-~~~~~~~~~------------------------~T 296 (425)
T PRK09264 245 GRTGTFFSFERAGITPDIVTLS--KSIS-GYGLPMALVLIKPEL-DVWKPGEHN------------------------GT 296 (425)
T ss_pred ccccHHHHHhhcCCCCCEEEec--cccC-CCccceEEEEEchhh-hccCCCccC------------------------CC
Confidence 211 112223357887665 9888 656 6999998775 222221100 01
Q ss_pred CCCChhHHHHHHHHH-HHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCC
Q 010538 329 GTASFLSIASIRHGF-NLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRP 407 (508)
Q Consensus 329 gt~~~~~~~~l~~al-~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 407 (508)
.+.|..+.++..+++ +++.+ .++.++++++.++|.+.|+++.. ..+.+ +....+ .+.++++.+++.
T Consensus 297 ~~gnp~~~aaa~a~l~~~~~~---~~l~~~~~~~g~~l~~~l~~l~~--~~~~~-~~~vrg-------~Gl~~~i~l~~~ 363 (425)
T PRK09264 297 FRGNNLAFVTATAALEEYWSD---DAFEKEVKAKGELVRERLEEIAA--KYPGL-GAEVRG-------RGMMQGIDFGDG 363 (425)
T ss_pred CCCCHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHH--hCCCc-eeccee-------cccEEEEEecCh
Confidence 123344455555666 44332 46788888999999888876521 00111 111111 267778887542
Q ss_pred CCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHH
Q 010538 408 DGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFED 487 (508)
Q Consensus 408 ~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ee 487 (508)
. ....+.+.+.++||.+.+.. .....||+++.+.+|++|
T Consensus 364 ~----~~~~l~~~~~~~Gv~~~~~~-------------------------------------~~~~~lr~~p~l~~t~~e 402 (425)
T PRK09264 364 E----LAGKIAAEAFENGLIIETSG-------------------------------------PEDEVVKLLPPLTIDEEE 402 (425)
T ss_pred H----HHHHHHHHHHHCCCEEeccC-------------------------------------CCCCEEEEeCCCCCCHHH
Confidence 1 12347788889999986521 014689999999999999
Q ss_pred HHHHHHhhhhhhhhhh
Q 010538 488 AKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 488 v~~l~~~~~~~~~~~~ 503 (508)
|+++++.+.+.++.+.
T Consensus 403 i~~~~~~l~~~l~~~~ 418 (425)
T PRK09264 403 LEEGLDILEEAVAEVL 418 (425)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998876543
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.5e-12 Score=132.76 Aligned_cols=337 Identities=12% Similarity=0.064 Sum_probs=201.2
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..+ .+--+|.+++++.+++. ... ..+.+. ......++.+++++++....+ .+.|++++
T Consensus 73 dG~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~-~l~--~~~~~~----~~~~~~~lAe~L~~~~p~~~~--~v~f~~SG 143 (442)
T TIGR03372 73 QGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLA-KQP--LHSQEL----LDPLRALLAKTLAALTPGKLK--YSFFCNSG 143 (442)
T ss_pred CCCEEEECCccHHhhhcCCCCHHHHHHHHHHHH-hCC--Cccccc----CCHHHHHHHHHHHHhCCCCcC--EEEEeCCc
Confidence 6788999633 45568999988766543 221 111111 123344556667777654445 79999999
Q ss_pred HHHHHHHHhhcCC----CCCCeEEEeccc-ccchHHHHHHHHh------c---CCeEEEEccCCccCccccccccccccc
Q 010538 113 TAALKLVGEAFPW----SHQSSYMYTMEN-HNSVLGIREYALS------Q---GAAAFAIDVEEAVDNDGLSESLVTSTK 178 (508)
Q Consensus 113 t~al~~~~~~l~~----~~g~~vl~~~~~-h~s~~~~~~~~~~------~---G~~v~~v~~~~~~~~~~l~~~~~~~~~ 178 (508)
++|+..++..... ++...||+.... |............ + ...+..+|..
T Consensus 144 sEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~----------------- 206 (442)
T TIGR03372 144 TESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFG----------------- 206 (442)
T ss_pred hHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCC-----------------
Confidence 9999887764321 134567666543 3333333221100 0 0112223322
Q ss_pred cccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecccc-
Q 010538 179 ISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKG- 253 (508)
Q Consensus 179 ~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~- 253 (508)
|.+.++ +.+++-....+++..|++..+....|.+.| ++++.++|++ +|+++|+|++|.
T Consensus 207 ---d~~~~~--~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~------------~g~llI~DEV~tG 269 (442)
T TIGR03372 207 ---DIEAML--KALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDE------------FGALLILDEVQTG 269 (442)
T ss_pred ---CHHHHH--HHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHH------------cCCEEEEeecccC
Confidence 233333 222110011356889999999999999998 7888888887 999999999985
Q ss_pred CCCCCC----CCCCCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccC
Q 010538 254 CVTQPP----DLSKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFED 328 (508)
Q Consensus 254 ~g~~~~----d~~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (508)
+|..-. +......|++++ .|.+|+= ..+|.+++++++.+.+... . ....
T Consensus 270 ~GRtG~~~a~e~~gv~PDivt~--gK~lg~G~~Pigavv~~~~i~~~~~~~-----------------------~-~~~~ 323 (442)
T TIGR03372 270 MGRTGKMFACEHEGVQPDILCL--AKALGGGVMPIGATIATEAVFSVLFDN-----------------------P-FLHT 323 (442)
T ss_pred CCccccchhhhhcCCCCCeeee--hhhhcCCcccceEEEecHHHHHhhhcc-----------------------C-cccc
Confidence 332211 111224788875 5977621 0168888888876554211 0 0011
Q ss_pred CCC--ChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeC
Q 010538 329 GTA--SFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKR 406 (508)
Q Consensus 329 gt~--~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 406 (508)
+|. |..+.++..++++.+.+. ++.++.+++.++|++.|+++.. ..+. .+..-.. .+.++.+.+.+
T Consensus 324 ~T~~gnp~~~Aaa~a~L~~i~~~---~l~~~~~~~G~~l~~~L~~l~~--~~~~--~i~~vRG------~Gl~~giel~~ 390 (442)
T TIGR03372 324 TTFGGNPLACAAALATINELLEK---NLPAQAAIKGDFLLDGFQQLAA--EYPD--LIIEARG------KGLLMAIEFRD 390 (442)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHH--hCCC--ceEEEec------ceEEEEEEeCC
Confidence 233 556677777788887663 4667778888888888876520 0010 1111111 27788888754
Q ss_pred CCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHH
Q 010538 407 PDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFE 486 (508)
Q Consensus 407 ~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~e 486 (508)
.+ ....+.+.+.++||.+.... + ..+.+|+++....|.+
T Consensus 391 ~~----~~~~i~~~l~~~Gvl~~~~~---~----------------------------------~~~~lr~~Ppl~~t~~ 429 (442)
T TIGR03372 391 NE----IGYAFAKELFQQNILVAGTL---N----------------------------------NAKSIRIEPPLTITIE 429 (442)
T ss_pred hH----HHHHHHHHHHHCCcEEeecC---C----------------------------------CCCEEEEECCcccCHH
Confidence 21 11347788888999986421 0 1468999999999999
Q ss_pred HHHHHHHhhhhh
Q 010538 487 DAKVNRCSSFDF 498 (508)
Q Consensus 487 ev~~l~~~~~~~ 498 (508)
|+|++++++.+.
T Consensus 430 ~id~~~~~l~~~ 441 (442)
T TIGR03372 430 QCALVIKAAKDA 441 (442)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-12 Score=134.61 Aligned_cols=279 Identities=16% Similarity=0.194 Sum_probs=159.6
Q ss_pred CeeeeCCCCCCCCHHHHHH-HHHHhhccccC--CCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHH
Q 010538 41 TVYLDHAGATLYSELQMEA-IFRDFTTNVYG--NPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALK 117 (508)
Q Consensus 41 ~iyld~~~~~~~~~~~~~a-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~ 117 (508)
.-|+.-++.+-.-|+++.. +... .+++. .|... ..+...-+.+-+....++++.|.+.. ...+-.++|.+-.
T Consensus 67 ~~fiG~G~y~~~~P~~i~~~i~~~--~ef~TaYtPYQp-EisQG~Lq~lfe~Qs~i~eLTGmdva--NaSlyd~atA~aE 141 (429)
T PF02347_consen 67 TSFIGAGSYTHYVPAVIDRNILSR--PEFYTAYTPYQP-EISQGRLQALFEYQSMICELTGMDVA--NASLYDGATAAAE 141 (429)
T ss_dssp TS---CTTT-----HHHHH-HHCC--HHCCCS-STTSG-GGBHHHHHHHHHHHHHHHHHHTSSEE---SEBSSCCHHHHH
T ss_pred CccccccccCceeChhhcCccccC--hhhhccCCCCCc-HHHHHHHHHHHHHHHHHHHhhCCCcc--CCCCCChhHHHHH
Confidence 3344445544445566655 3321 12221 13221 12344566677899999999999865 4566778887665
Q ss_pred HHHhhcCC--CCCCeEEEecccccchHHHHH-HHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCC
Q 010538 118 LVGEAFPW--SHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 118 ~~~~~l~~--~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
.+..+... +.+.+|+++..-||.+...++ ++...|++++.+|.+..+..+
T Consensus 142 a~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~~~~~d--------------------------- 194 (429)
T PF02347_consen 142 AMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVPLDEDGTTD--------------------------- 194 (429)
T ss_dssp HHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-BBTTCSB----------------------------
T ss_pred HHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEecccccCCcc---------------------------
Confidence 55444432 234599999999999887655 345578999999887544430
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC-CCCCCCCCCCcEEEEec
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT-QPPDLSKYPVDFVVMSF 273 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~-~~~d~~~~~~D~~~~S~ 273 (508)
++++..|++++++ ..|.+.++++|.+++|+ +|+++++ ++.-... .-....++|+|+++++
T Consensus 195 ----~~~~a~v~vq~Pn-~~G~~ed~~~i~~~~h~------------~gal~~~-~ad~~aL~~l~~Pge~GADI~vg~- 255 (429)
T PF02347_consen 195 ----DDDTAAVMVQNPN-TFGVFEDIKEIADIAHA------------AGALVIV-GADPNALGGLKSPGEYGADIVVGE- 255 (429)
T ss_dssp ----STTEEEEEEESS--TTSB--THHHHHHHHHH------------TT-EEEE-CGGCCGCCTC--GGGGT-SEEEEC-
T ss_pred ----ccCeEEEEeecCC-CCceEeeHHHHHHHHHH------------cCCEEEE-ecCHHHHhCcCChhhcCccEEeeC-
Confidence 3678999999874 67999999999999998 8999887 6542211 1123356799999776
Q ss_pred cccccCCC-----cceEEEEechhHhhhccccccCceEEecccchhhhh--hccCccccccCCCCChh---HHHHHH--H
Q 010538 274 YKIFGYPT-----GLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVK--RRQGVEELFEDGTASFL---SIASIR--H 341 (508)
Q Consensus 274 ~K~~g~P~-----G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~gt~~~~---~~~~l~--~ 341 (508)
||.||.|. |.|++-+++++...+.-.+.|-.. .......|.. ....+.-+++-.|.|+- .+.++. .
T Consensus 256 ~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~--D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~ 333 (429)
T PF02347_consen 256 HQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTK--DADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAI 333 (429)
T ss_dssp CTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEEEE--BCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHH
T ss_pred CCCCcccCCCCCCCeeeEEEhhhhhhhCCCceecccc--cccccceeeeccccccccccccchhhhhhhhHHHHHHHHHH
Confidence 77665443 389999999987665544443110 0011111111 11122344555666552 233333 2
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHhcc
Q 010538 342 GFNLINSLTVPAICRHIASLGMYVRKVLLSL 372 (508)
Q Consensus 342 al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l 372 (508)
-+.++...|+.++.+++..++.|+.+.|++.
T Consensus 334 Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~ 364 (429)
T PF02347_consen 334 YLAYLGPEGLREIAERIHLNAHYLAERLKKI 364 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556677899999999999999999999886
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-11 Score=126.53 Aligned_cols=363 Identities=13% Similarity=0.097 Sum_probs=216.9
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC-CCCceEEEcCC
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS-MKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~~~i~~t~g 111 (508)
++..|||..+ .+--+|.+++++.++. .... ..+..+.. .+...+.-+++.+++..+ .+ .+.|+++
T Consensus 54 dG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~-~~~~-h~~~~~~~----~e~~v~~ae~L~~~~p~~~~~--~~~f~~s 125 (447)
T COG0160 54 DGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQL-AKLN-HTHTRDLY----YEPYVELAEKLTALAPGSGLK--KVFFGNS 125 (447)
T ss_pred CCCEEEEcccCcchhccCCCCHHHHHHHHHHH-HHhh-cccCCccc----chhHHHHHHHHHHhCCcccCC--eEEecCC
Confidence 7899999876 4556899999876644 2221 11222111 123444556666666653 44 7899999
Q ss_pred hHHHHHHHHhhcCC-CCCCeEEEecccc-cchHHHHHHHHh----------cCCeEEEEccCCccCc-cccccccccccc
Q 010538 112 ATAALKLVGEAFPW-SHQSSYMYTMENH-NSVLGIREYALS----------QGAAAFAIDVEEAVDN-DGLSESLVTSTK 178 (508)
Q Consensus 112 ~t~al~~~~~~l~~-~~g~~vl~~~~~h-~s~~~~~~~~~~----------~G~~v~~v~~~~~~~~-~~l~~~~~~~~~ 178 (508)
+++|+..++..... .++..||.....| ......+.+-.. ....|..+|......- -.... ...
T Consensus 126 GaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~----~~~ 201 (447)
T COG0160 126 GAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGG----EEC 201 (447)
T ss_pred cHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCch----hhh
Confidence 99999988765532 3345666665444 333333332111 1123666665421110 00000 000
Q ss_pred cccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC-CC-
Q 010538 179 ISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC-VT- 256 (508)
Q Consensus 179 ~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~-g~- 256 (508)
-....+.++ ..+.+......++..+++..++...|.+.|.+..-+-+++ +|++||+++|+|++|+. |.
T Consensus 202 ~~~~~~~~e--~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~--------~~~~~gillI~DEVQtG~GRT 271 (447)
T COG0160 202 GDDALEYIE--RALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRK--------LCREHGILLIADEVQTGFGRT 271 (447)
T ss_pred hHHHHHHHH--HHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHH--------HHHHcCCEEEEeccccCCCcc
Confidence 001133344 3332223334578999999999999999985543333333 44459999999999974 21
Q ss_pred -CCCCCCCC--CCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCCh
Q 010538 257 -QPPDLSKY--PVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASF 333 (508)
Q Consensus 257 -~~~d~~~~--~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~ 333 (508)
.-+.+... ..|++++| |.+|+---+|.++.++++.. ..|-..++ +. .-|.
T Consensus 272 G~~fa~E~~gv~PDivt~a--K~ig~G~Pl~avv~r~ei~~-~~~g~~~~----------------------Tf--~GNp 324 (447)
T COG0160 272 GKMFAFEHFGVEPDIVTLA--KSLGGGLPLSAVVGRAEIMD-WPPGGHGG----------------------TF--GGNP 324 (447)
T ss_pred ccchhhhhcCCCCCEEEec--ccccCCCceeEEeccHHhcc-cCCcccCC----------------------CC--CcCH
Confidence 11222222 47999998 97773111899999998854 33321111 11 1234
Q ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCC-CCcc
Q 010538 334 LSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPD-GSWF 412 (508)
Q Consensus 334 ~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~ 412 (508)
.+.++..+.++.+.+ +.+.++..++.++|++.|.++. .....+++-.. ++-++-+.+.... ..+.
T Consensus 325 va~Aaa~AvL~vie~---e~L~~~a~~~G~~l~~~L~~l~-----~~~~~IgdVRG------~Glm~giE~v~d~~t~~p 390 (447)
T COG0160 325 VACAAALAVLDVIEE---ENLLERAAELGEYLRDRLEELQ-----EKHPLIGDVRG------LGLMIGVELVKDRDTKEP 390 (447)
T ss_pred HHHHHHHHHHHHHHH---ccHHHHHHHHHHHHHHHHHHHH-----hhcCceecccc------cceEEEEEEecCCCCCCC
Confidence 456666667776665 4778999999999999998763 23445555433 3677777765321 1111
Q ss_pred C---HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHH
Q 010538 413 G---YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAK 489 (508)
Q Consensus 413 ~---~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~ 489 (508)
+ ..++...+.++|+.+.. |.. ..+.+||.+-.-.|.|++|
T Consensus 391 ~~~~~~~i~~~~~~~Glil~~---~G~----------------------------------~~nviRi~PPL~is~e~~d 433 (447)
T COG0160 391 DAELAAKIVARAFERGLLLLT---CGP----------------------------------HGNVLRILPPLTISDEELD 433 (447)
T ss_pred CHHHHHHHHHHHHHcCCEEec---cCC----------------------------------CCcEEEEeCCcccCHHHHH
Confidence 2 24577888899987654 211 2689999999999999999
Q ss_pred HHHHhhhhhhhh
Q 010538 490 VNRCSSFDFVNF 501 (508)
Q Consensus 490 ~l~~~~~~~~~~ 501 (508)
..++.|.+.++.
T Consensus 434 ~~l~il~~al~~ 445 (447)
T COG0160 434 EGLDILEEALKE 445 (447)
T ss_pred HHHHHHHHHHHh
Confidence 999999987754
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-11 Score=124.29 Aligned_cols=349 Identities=13% Similarity=0.080 Sum_probs=222.5
Q ss_pred eeeCCCCCCCCHHHHH-HHHHHhhccccCCCCCccc--hhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHH
Q 010538 43 YLDHAGATLYSELQME-AIFRDFTTNVYGNPHSQSD--ISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLV 119 (508)
Q Consensus 43 yld~~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~ 119 (508)
|+..+.....-|+++. .+++. ..|-.....|. .+...-+..-.....++++.|.+-. +-.+--++|.+-..+
T Consensus 79 fiG~GyY~~~~P~vI~rnile~---pewyTaYTPYQpEISQGrLqaLfefQtlv~dLTGm~VA--NASm~DeaTAaAEAm 153 (450)
T COG0403 79 FIGAGYYDTYTPPVILRNILEN---PEWYTAYTPYQPEISQGRLEALFEFQTLVADLTGLDVA--NASMLDEATAAAEAM 153 (450)
T ss_pred hccCcccCCcCcHHHHHHhhcC---ccccccCCCCchhhhhHHHHHHHHHHHHHHHHhCCCcc--cchhhhhHHHHHHHH
Confidence 4555555555666665 44321 11212222222 1222344455678899999999876 566777888777666
Q ss_pred HhhcCCCC--CCeEEEecccccchHHHHH-HHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCC
Q 010538 120 GEAFPWSH--QSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERD 196 (508)
Q Consensus 120 ~~~l~~~~--g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~ 196 (508)
..+....+ .++++++..-||.....++ +++-.|++++.++.++ .+.++ +.
T Consensus 154 ~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~d--------------------~~~l~--~~----- 206 (450)
T COG0403 154 LMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDADD--------------------LDDLE--SA----- 206 (450)
T ss_pred HHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccch--------------------hhhhh--hc-----
Confidence 66654333 5899999999999988776 4556788998887762 33444 22
Q ss_pred CCCCCceEEEEeCCCCCCc-cccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccc-cCCCCCCCCCCCCCcEEEEecc
Q 010538 197 PAGDAYNLFAFPSECNFSG-SRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAK-GCVTQPPDLSKYPVDFVVMSFY 274 (508)
Q Consensus 197 ~~~~~t~lv~~~~~~n~tG-~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~-~~g~~~~d~~~~~~D~~~~S~~ 274 (508)
....+..+++..++ ..| ...+++++.+.+|+ +|++++|=.-- +++. --...++|+|+++++++
T Consensus 207 -~~~~~~gv~vQyP~-~~G~~~~d~~~l~~~~h~------------~~al~~v~aDplaL~L-L~pPGe~GADIvvG~~Q 271 (450)
T COG0403 207 -DDGDVFGVLVQYPN-TFGIVEEDLRALIEAAHS------------AGALVIVAADPLALGL-LKPPGEFGADIVVGSAQ 271 (450)
T ss_pred -cccCeEEEEEecCC-CCCccchhHHHHHHHHhh------------cCCEEEEEechhHhhc-cCCccccCCceEEecCc
Confidence 24577889989875 567 77779999999998 78877764322 1222 23345679999999999
Q ss_pred c-----cccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhh--ccCccccccCCCCChhH---HHHHHHH--
Q 010538 275 K-----IFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKR--RQGVEELFEDGTASFLS---IASIRHG-- 342 (508)
Q Consensus 275 K-----~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~gt~~~~~---~~~l~~a-- 342 (508)
- .||||. +|++-+++++..++.-.+.|-. ........|... ...+.-|++-.|.|+-. +.++.++
T Consensus 272 rfGvPmgfGGPh-ag~fA~~~~~~R~mPGRlVG~S--~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y 348 (450)
T COG0403 272 RFGVPMGFGGPH-AGYFAVKDEFKRQMPGRLVGVS--VDAAGKRAFRLALQTREQHIRREKATSNICTNQALLALAASMY 348 (450)
T ss_pred ccCCCcCCCCcc-eeeeeEhHhHhhcCCCceeeee--ecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHHHHHHHHHH
Confidence 7 355553 8999999998655443443311 011111122211 12334566667777632 2333333
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHh
Q 010538 343 FNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLAS 422 (508)
Q Consensus 343 l~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~ 422 (508)
+-++...|+.+|..++.+++.++.++|++.. .|++++.+.- -..+.++++.. . ...+.+...
T Consensus 349 ~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~-----~g~~~~~~~f--------Fdt~~v~~~~~-~----~~~l~~~~~ 410 (450)
T COG0403 349 AVYHGPQGLKEIAERIHRLAAYLAAGLKEIG-----AGVELVFDHF--------FDTFTVRVPEE-V----AEALLAAAI 410 (450)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHhhcC-----CceEeccccc--------eeeEEEecchh-H----HHHHHHHHH
Confidence 4466677999999999999999999999663 2688876521 35556666531 0 123455555
Q ss_pred hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 423 LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 423 ~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
..|+-++.- ..+.+=+++.--+|.++|+.+++++...
T Consensus 411 ~~G~~L~~~---------------------------------------~~~~~~ia~tEt~t~~~i~~l~~~~~~~ 447 (450)
T COG0403 411 AGGINLRRV---------------------------------------DADTVLIALTETTTKEDIDALVAAFGGV 447 (450)
T ss_pred hcCCceeee---------------------------------------cCCceEEEeecccCHHHHHHHHHHHhhh
Confidence 667776541 1457888888889999999999987643
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-11 Score=129.93 Aligned_cols=350 Identities=12% Similarity=0.095 Sum_probs=199.8
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC-CCCceEEEcCC
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS-MKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~~~i~~t~g 111 (508)
++..|+|..+. +--+|.+++++.+++. .. ........ ......++-++++++.... .+ .+.|+++
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~-~~-~~~~~~~~----~~~~~~~la~~l~~~~p~~~~~--~~~f~~s 109 (421)
T PRK09792 38 EGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQ-QF-THTAYQIV----PYESYVTLAEKINALAPVSGQA--KTAFFTT 109 (421)
T ss_pred CCCEEEEccCchhhhcCCCCCHHHHHHHHHHHH-hc-cCcccCcc----CCHHHHHHHHHHHHhCCCCCCc--eEEEeCC
Confidence 78889997543 5558888888766543 21 11111101 1122334445566666432 24 7999999
Q ss_pred hHHHHHHHHhhcC-CCCCCeEEEeccc-ccchHHHHHHHH-----hcC-----CeEEEEccCCccCcccccccccccccc
Q 010538 112 ATAALKLVGEAFP-WSHQSSYMYTMEN-HNSVLGIREYAL-----SQG-----AAAFAIDVEEAVDNDGLSESLVTSTKI 179 (508)
Q Consensus 112 ~t~al~~~~~~l~-~~~g~~vl~~~~~-h~s~~~~~~~~~-----~~G-----~~v~~v~~~~~~~~~~l~~~~~~~~~~ 179 (508)
+++|+..++.... ..+..+|+..... |........... +.+ ..+..+|......- + ..
T Consensus 110 GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~--~--------~~ 179 (421)
T PRK09792 110 GAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHG--I--------ST 179 (421)
T ss_pred hHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccc--c--------cH
Confidence 9999987766542 2334566666543 333333322210 001 01222332211000 0 00
Q ss_pred ccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCcccc-C---HHHHHHHHcCCccccccCCCCCCCeEEEEeccccC-
Q 010538 180 SLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRF-N---LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC- 254 (508)
Q Consensus 180 ~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~-~---i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~- 254 (508)
..+.+.++ +.+++. ...++++.|++..+++++|... | +++|.++|++ +|+++|+|++++.
T Consensus 180 ~~~~~~l~--~~~~~~-~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~------------~g~llI~DEv~tg~ 244 (421)
T PRK09792 180 QDSLDAIE--RLFKSD-IEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDE------------HGIVMIADEVQSGF 244 (421)
T ss_pred HHHHHHHH--HHHHhc-cCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHH------------cCCEEEEeccccCC
Confidence 01245565 444321 0135678999988899999876 6 4455555554 9999999999763
Q ss_pred CCCC--CCCCC--CCCcEEEEeccccccCCC-cceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCC
Q 010538 255 VTQP--PDLSK--YPVDFVVMSFYKIFGYPT-GLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDG 329 (508)
Q Consensus 255 g~~~--~d~~~--~~~D~~~~S~~K~~g~P~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 329 (508)
|... ..... ...|+. ++.|.++ +. -+|++++++++.+.+.+...+ ...
T Consensus 245 gr~G~~~a~~~~~~~pDi~--t~gK~l~-~G~pigav~~~~~i~~~~~~~~~~------------------------~T~ 297 (421)
T PRK09792 245 ARTGKLFAMDHYADKPDLM--TMAKSLA-GGMPLSGVVGNANIMDAPAPGGLG------------------------GTY 297 (421)
T ss_pred CCCCchhHHHhcCCCCcEE--Eeehhhc-CCCceEEEEEcHHHHhccCCCCcC------------------------CCC
Confidence 2221 12222 246765 4569887 41 289999998887655432111 011
Q ss_pred CCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCC
Q 010538 330 TASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDG 409 (508)
Q Consensus 330 t~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 409 (508)
..|....++..++++++.+. ++.++.+++.+++.+.|+++.. ..|. +....+ .+.++++.+.+.+.
T Consensus 298 ~gnpl~~aaa~a~l~~l~~~---~~~~~~~~~g~~l~~~l~~l~~--~~p~--v~~vrG-------~Gl~~~ie~~~~~~ 363 (421)
T PRK09792 298 AGNPLAVAAAHAVLNIIDKE---SLCERANQLGQRLKNTLIDAKE--SVPA--IAAVRG-------LGSMIAAEFNDPQT 363 (421)
T ss_pred CCCHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHH--hCCC--cceecc-------cceEEEEEecCCcc
Confidence 23444555666678877653 5677888888888888876521 0011 111222 27888888864321
Q ss_pred Cc---cCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHH
Q 010538 410 SW---FGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFE 486 (508)
Q Consensus 410 ~~---~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~e 486 (508)
.. .....+.+.+.++||.+... . ...+.||+.+.+-.|++
T Consensus 364 ~~~~~~~~~~l~~~~~~~Gv~i~~~----g---------------------------------~~~~~irl~P~l~i~~~ 406 (421)
T PRK09792 364 GEPSAAIAQKIQQRALAQGLLLLTC----G---------------------------------AYGNVIRFLYPLTIPDA 406 (421)
T ss_pred CCcchHHHHHHHHHHHHCCcEEeec----C---------------------------------CCCCEEEEeCCCcCCHH
Confidence 10 12345777788899998531 0 01578999999999999
Q ss_pred HHHHHHHhhhhhh
Q 010538 487 DAKVNRCSSFDFV 499 (508)
Q Consensus 487 ev~~l~~~~~~~~ 499 (508)
|++++++.+.+.+
T Consensus 407 ei~~~~~~l~~~l 419 (421)
T PRK09792 407 QFDAAMKILQDAL 419 (421)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988765
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-11 Score=130.80 Aligned_cols=361 Identities=11% Similarity=0.036 Sum_probs=201.7
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+ .+--+|.+++++.++...-.+..+. .+ ..+...++-+++++++..+.+ .+.|++++
T Consensus 50 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~~~~~~~~~-~~-----~~~~~~~la~~l~~~~p~~~~--~v~f~~sG 121 (460)
T PRK06541 50 RGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAFFPLW-SY-----AHPPAIELAERLAALAPGDLN--RVFFTTGG 121 (460)
T ss_pred CCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhCcCcccc-cc-----CCHHHHHHHHHHHHhCCCCcC--EEEEcCCc
Confidence 7888999743 3555788988876654321111111 11 122334455667777654445 89999999
Q ss_pred HHHHHHHHhhcC-C---C---CCCeEEEeccc-ccchHHHHHHHH----hc--C---CeEEEEccCCccCcccccccccc
Q 010538 113 TAALKLVGEAFP-W---S---HQSSYMYTMEN-HNSVLGIREYAL----SQ--G---AAAFAIDVEEAVDNDGLSESLVT 175 (508)
Q Consensus 113 t~al~~~~~~l~-~---~---~g~~vl~~~~~-h~s~~~~~~~~~----~~--G---~~v~~v~~~~~~~~~~l~~~~~~ 175 (508)
++|+..++.... . . +..+||..... |........... +. + ..+..+|...........+ ..
T Consensus 122 seAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~ 199 (460)
T PRK06541 122 SEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGD--DP 199 (460)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccccccCC--CH
Confidence 999987765432 1 1 23566665443 333332222110 00 0 1122333221000000000 00
Q ss_pred ccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecc
Q 010538 176 STKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAA 251 (508)
Q Consensus 176 ~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a 251 (508)
....+..++.++ +.+.+. ..+.+..|++..++++.|.+.| +++|.++|++ +|+++|+|++
T Consensus 200 ~~~~~~~~~~l~--~~l~~~--~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~------------~g~llI~DEV 263 (460)
T PRK06541 200 EAFGRWAADRIE--EAIEFE--GPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDR------------YDVLLVSDEV 263 (460)
T ss_pred HHHHHHHHHHHH--HHHHhc--CCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHH------------cCCEEEEech
Confidence 000000124455 444211 1246788888888999999998 7777777776 9999999999
Q ss_pred c-cCCCCCCC--C--CCCCCcEEEEeccccccCCC-cceEEEEechhHhhhccccccCceEEecccchhhhhhccCcccc
Q 010538 252 K-GCVTQPPD--L--SKYPVDFVVMSFYKIFGYPT-GLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEEL 325 (508)
Q Consensus 252 ~-~~g~~~~d--~--~~~~~D~~~~S~~K~~g~P~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 325 (508)
| ++|....- . .....|++++ .|.+++-. -+|+++++++..+.+.+.. .. .
T Consensus 264 ~tGfGR~G~~~a~~~~gv~PDivt~--gK~l~~G~~pigav~~~~~i~~~~~~~~-~~---------------------~ 319 (460)
T PRK06541 264 ICAFGRLGEMFGCERFGYVPDIITC--AKGITSGYSPLGAMIASDRLFEPFLDGP-TM---------------------F 319 (460)
T ss_pred hhCCCcCchhhhhhhcCCCCCEEEe--cccccCCccceeEEEEcHHHHHHhhcCC-Cc---------------------c
Confidence 8 55532211 1 1224788865 59777210 2799999988876554320 00 0
Q ss_pred ccCCC--CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEE
Q 010538 326 FEDGT--ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFN 403 (508)
Q Consensus 326 ~~~gt--~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 403 (508)
+..+| .|....++..++++.+.+ +.+.++..++.++|.+.|+++.. .+.+..+. + .+.++.+.
T Consensus 320 ~~~~T~~gnp~~~aaala~l~~l~~---~~~~~~~~~~g~~l~~~L~~l~~---~~~v~~vr--g-------~Gl~~~ie 384 (460)
T PRK06541 320 LHGYTFGGHPVSAAVALANLDIFER---EGLLDHVRDNEPAFRATLEKLLD---LPIVGDVR--G-------DGYFYGIE 384 (460)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHhhc---CCCeEEEE--e-------cceEEEEE
Confidence 01112 334455556667777654 35678899999999999987621 11111111 1 26677777
Q ss_pred eeCCCC--CccC--------HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCc
Q 010538 404 LKRPDG--SWFG--------YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTG 473 (508)
Q Consensus 404 ~~~~~~--~~~~--------~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (508)
+..... ..++ ...+.+.+.++||.+.+.. ....
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-------------------------------------~g~~ 427 (460)
T PRK06541 385 LVKDKATKETFTDDESERLLRGFLSPALFEAGLYCRADD-------------------------------------RGDP 427 (460)
T ss_pred EecCcccccCCcchhhhhhHHHHHHHHHHhCCeEEEecC-------------------------------------CCCC
Confidence 642110 0010 0235667778999987521 0136
Q ss_pred eEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 474 AIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 474 ~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
.+|+++....|++||+++++++.+.+.-
T Consensus 428 ~lrl~Ppl~~t~~~id~~~~~l~~~l~~ 455 (460)
T PRK06541 428 VVQLAPPLISGQEEFDEIEQILRSVLTE 455 (460)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999987753
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.4e-11 Score=126.66 Aligned_cols=360 Identities=12% Similarity=0.050 Sum_probs=203.1
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..+ .+--+|.+++++.++...-...++ .+ ......++-++++++.....+ .+.|++++
T Consensus 51 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~--~~-----~~~~~~~lae~L~~~~p~~~~--~v~f~~SG 121 (451)
T PRK06062 51 EGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLCTVAP--AH-----ANDARSEAARLIAERAPGDLS--KVFFTNGG 121 (451)
T ss_pred CCCEEEEcccCHHhhcCCCCCHHHHHHHHHHHHhcCCcCC--cc-----CCHHHHHHHHHHHHhCCCCCC--EEEEcCCh
Confidence 7889999854 355588999888665432111111 11 123344556667777654445 89999999
Q ss_pred HHHHHHHHhhcC-CCCCCeEEEecccc-cchHHHHHHHHh---cC-----CeEEEEccCCccCccccccccccccccccc
Q 010538 113 TAALKLVGEAFP-WSHQSSYMYTMENH-NSVLGIREYALS---QG-----AAAFAIDVEEAVDNDGLSESLVTSTKISLL 182 (508)
Q Consensus 113 t~al~~~~~~l~-~~~g~~vl~~~~~h-~s~~~~~~~~~~---~G-----~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d 182 (508)
++|+..++.... ..+..+||.....| ......+..... .. ..+..++........ +.. ..........
T Consensus 122 sEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~-~~~~~~~~~~ 199 (451)
T PRK06062 122 ADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSE-FHA-TTEEEECERA 199 (451)
T ss_pred HHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccc-cCC-CChHHHHHHH
Confidence 999988776542 23445666665433 333333222100 00 011122211100000 000 0000000001
Q ss_pred hhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecccc-CCCC
Q 010538 183 PIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKG-CVTQ 257 (508)
Q Consensus 183 ~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~-~g~~ 257 (508)
++.++ +.++.. ..+++..|++..+....|.+.| ++++.++|++ +|+++|+|++|+ +|..
T Consensus 200 ~~~le--~~l~~~--~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~------------~g~lLI~DEV~tGfGRt 263 (451)
T PRK06062 200 LAHLE--RVIELE--GPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDR------------HGIVLIADEVMAGFGRT 263 (451)
T ss_pred HHHHH--HHHHhc--CCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHH------------cCCEEEeeccccCCCcC
Confidence 45555 444211 1256788999889888899999 7788888887 999999999987 3321
Q ss_pred C----CCCCCCCCcEEEEeccccccCCC-cceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCC
Q 010538 258 P----PDLSKYPVDFVVMSFYKIFGYPT-GLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTAS 332 (508)
Q Consensus 258 ~----~d~~~~~~D~~~~S~~K~~g~P~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~ 332 (508)
- .+......|+++++ |.+++-. -+|.+++++++.+.+.+..+..+ . ..+-|
T Consensus 264 G~~~a~~~~gv~PDi~t~g--K~lggG~~Pigav~~~~~i~~~~~~~~~~~~---------------------~-T~~gn 319 (451)
T PRK06062 264 GKWFAIEHFGVVPDLITFA--KGVNSGYVPLGGVAISEAIAATFADRPYPGG---------------------L-TYSGH 319 (451)
T ss_pred cHHHHHHhcCCCCCeeeec--hhhhcCCcCcEEEEEcHHHHHHhccCCCCCC---------------------C-CCCCC
Confidence 1 11112247888765 9777310 17888999887665542110000 0 01224
Q ss_pred hhHHHHHHHHHHHHHhcChHHHHHHHHHHH-HHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCC--
Q 010538 333 FLSIASIRHGFNLINSLTVPAICRHIASLG-MYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDG-- 409 (508)
Q Consensus 333 ~~~~~~l~~al~~~~~~g~~~i~~~~~~l~-~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-- 409 (508)
..+.++..++++.+.+. .+.++..++. ++|.+.|+++.. ...++..-. -.+.++.+.+.....
T Consensus 320 pl~~Aaa~a~L~~l~~~---~l~~~~~~~G~~~l~~~L~~l~~-----~~~~v~~vr------G~Gl~~gve~~~~~~~~ 385 (451)
T PRK06062 320 PLACAAAVATINAMEEE---GIVENAARIGAEVLGPGLRELAE-----RHPSVGEVR------GLGVFWALELVADRETR 385 (451)
T ss_pred HHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHh-----cCCcEEeEe------ccccEEEEEEccccccc
Confidence 55666777788887664 4667777776 577777766421 111111111 125666666642111
Q ss_pred Ccc--------CHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCC
Q 010538 410 SWF--------GYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGY 481 (508)
Q Consensus 410 ~~~--------~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~ 481 (508)
..+ ....+.+.+.++||.+.+. .+.+|+++.+
T Consensus 386 ~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~----------------------------------------~~~lrl~ppl 425 (451)
T PRK06062 386 EPLAPYGASSAAMAAVKAACKERGLLPFVN----------------------------------------GNRIHVVPPC 425 (451)
T ss_pred CCCcccchhhHHHHHHHHHHHHCCcEEeec----------------------------------------CCEEEEECCc
Confidence 001 1235777888899997541 3579999999
Q ss_pred CCCHHHHHHHHHhhhhhhhhhh
Q 010538 482 MSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 482 ~~t~eev~~l~~~~~~~~~~~~ 503 (508)
.+|++||+++++.+.+.++-++
T Consensus 426 ~~t~~eid~~~~~l~~~l~~~~ 447 (451)
T PRK06062 426 TVTEDEVREGLAILDAALAVAD 447 (451)
T ss_pred cCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999998876543
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.2e-11 Score=127.37 Aligned_cols=358 Identities=12% Similarity=0.028 Sum_probs=202.6
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+. +.-+|.+++++.+++ ......+.... ......++.+++++++....+ .+.|++++
T Consensus 44 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql-~~l~~~~~~~~-----~~~~~~~la~~l~~~~p~~~~--~v~f~~sG 115 (442)
T PRK13360 44 DGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQA-GELDYAPAFQM-----GHPKAFELANRIAEIAPGGLN--HVFFTNSG 115 (442)
T ss_pred CCCEEEECchhHHHhccCCCCHHHHHHHHHHH-HhCCCcccCCc-----CCHHHHHHHHHHHHhCCCCCC--EEEEeCCc
Confidence 78889998543 666888988876554 32211111111 122334566667777643344 79999999
Q ss_pred HHHHHHHHhhcC-C-----C-CCCeEEEecccc-cchHHHHHHH------HhcC---CeEEEEccCCc-cC--ccccccc
Q 010538 113 TAALKLVGEAFP-W-----S-HQSSYMYTMENH-NSVLGIREYA------LSQG---AAAFAIDVEEA-VD--NDGLSES 172 (508)
Q Consensus 113 t~al~~~~~~l~-~-----~-~g~~vl~~~~~h-~s~~~~~~~~------~~~G---~~v~~v~~~~~-~~--~~~l~~~ 172 (508)
++|+..++.... . + ...+||+....| .......... +.++ ..+..+|.... .. +..-
T Consensus 116 seA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~--- 192 (442)
T PRK13360 116 SESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKG--- 192 (442)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCC---
Confidence 999988766432 1 1 234666665433 3222222110 0011 12333433210 00 0000
Q ss_pred cccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEE
Q 010538 173 LVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLI 248 (508)
Q Consensus 173 ~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~viv 248 (508)
....-....+.++ +.+... ..+++..|++..+....|.+.| +++|.++|++ +|+++|+
T Consensus 193 --~~~~~~~~~~~le--~~l~~~--~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~------------~g~llI~ 254 (442)
T PRK13360 193 --QPEHGAELADELE--RLVTLH--DASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDK------------HGILLIF 254 (442)
T ss_pred --hHHHHHHHHHHHH--HHHHhc--CCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHH------------cCCEEEE
Confidence 0000000134555 444211 1256789999999999999999 8888888887 9999999
Q ss_pred eccc-cCCCCC--C--CCCCCCCcEEEEeccccccC---CCcceEEEEechhHhhhccccccCceEEecccchhhhhhcc
Q 010538 249 DAAK-GCVTQP--P--DLSKYPVDFVVMSFYKIFGY---PTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQ 320 (508)
Q Consensus 249 D~a~-~~g~~~--~--d~~~~~~D~~~~S~~K~~g~---P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~ 320 (508)
|++| ++|..- . +......|++++| |.+++ | +|.+.++++..+.+...-..+. .+
T Consensus 255 DEv~tG~GrtG~~~a~~~~gv~PDivt~g--K~l~gG~~P--~gav~~~~~i~~~~~~~~~~~~---------~~----- 316 (442)
T PRK13360 255 DEVITGFGRLGAPFAAQYFGVTPDLLTCA--KGLTNGAIP--MGAVFVSSEIHDAFMQGPEAGI---------EF----- 316 (442)
T ss_pred echhhCCCCCccchhhhhcCCCCceeeee--eccccCccc--eEEEEEcHHHHHHhhcCCcccc---------cc-----
Confidence 9998 454321 1 1122246887665 97762 3 7888888887654432100000 00
Q ss_pred CccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceE
Q 010538 321 GVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMV 400 (508)
Q Consensus 321 ~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 400 (508)
...+ ..+.|....++..++++.+.+. .+.++..++.+++++.|+++.. .+.+ .+-.. ++.+.
T Consensus 317 --~~~~-T~~g~pl~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~l~~l~~---~~~v---~~vrG------~Gl~~ 378 (442)
T PRK13360 317 --FHGY-TYSGHPLACAAALATLDLYERE---GLLTRAARLAPYWEDALHSLRD---APHV---IDIRN------LGLVG 378 (442)
T ss_pred --ccCC-CCCCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhhc---CCCe---eeeec------cceEE
Confidence 0000 1123566677777888888764 4667888889999998876520 0111 11110 13344
Q ss_pred EEEeeCCC-CCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEec
Q 010538 401 SFNLKRPD-GSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSF 479 (508)
Q Consensus 401 ~~~~~~~~-~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~ 479 (508)
.+.+.... +..-....+.+.+.++||.+..+ .+.+|+++
T Consensus 379 ~~~l~~~~~~~~~~~~~~~~~l~~~Gvl~~~~----------------------------------------~~~lr~~P 418 (442)
T PRK13360 379 AVELAPRDGKPGKRAYEVFLKCFEKGLMIRYT----------------------------------------GDILALSP 418 (442)
T ss_pred EEEEecCCCCcchhHHHHHHHHHHCCcEEEec----------------------------------------CCEEEEeC
Confidence 44443211 11011234667778899998642 35799999
Q ss_pred CCCCCHHHHHHHHHhhhhhhhh
Q 010538 480 GYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 480 ~~~~t~eev~~l~~~~~~~~~~ 501 (508)
.+.+|.+|||++++.+.+.++-
T Consensus 419 pl~~t~~eid~~~~~l~~~l~~ 440 (442)
T PRK13360 419 PLIIEEAQIDELFDILAQALKE 440 (442)
T ss_pred CCccCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887753
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.7e-11 Score=126.77 Aligned_cols=338 Identities=13% Similarity=0.083 Sum_probs=192.8
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+ .+--+|.+++++.++.. .... ....+ ......++-+++.++.... + .+.|++++
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~-~~~~-~~~~~-----~~~~~~~la~~L~~~~~~~-~--~v~f~~sG 107 (408)
T PRK04612 38 QGREYLDLAAGIAVCGLGHNDPDLVAALTEQAG-KLWH-TSNVF-----YSAPPLKLAEELVTASRFA-E--KVFLCNSG 107 (408)
T ss_pred CCCEEEEcCccHhhccCCCCCHHHHHHHHHHHH-hccc-ccccc-----CCHHHHHHHHHHHhhCCCC-C--EEEEcCch
Confidence 7888999743 35558889888766543 2211 11111 1122334455566655322 4 79999999
Q ss_pred HHHHHHHHhhcC-C---C----CCCeEEEeccc-ccchHHHHHHHHhcCCeEEE---EccCCccCccccccccccccccc
Q 010538 113 TAALKLVGEAFP-W---S----HQSSYMYTMEN-HNSVLGIREYALSQGAAAFA---IDVEEAVDNDGLSESLVTSTKIS 180 (508)
Q Consensus 113 t~al~~~~~~l~-~---~----~g~~vl~~~~~-h~s~~~~~~~~~~~G~~v~~---v~~~~~~~~~~l~~~~~~~~~~~ 180 (508)
++|+..++.... . + ...+|+..... |......... .|..... -|....... .. -
T Consensus 108 seA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~---~~~~~~~~~~~~~~~~~~~--------~~---~ 173 (408)
T PRK04612 108 TEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTA---TAQPKYQEGYEPLPGGFRY--------VD---F 173 (408)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHh---cCCcccccCCCCCCCCceE--------cC---C
Confidence 999988775432 1 1 12356665543 3333332221 1111000 011000000 00 1
Q ss_pred cchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC-----HHHHHHHHcCCccccccCCCCCCCeEEEEecccc-C
Q 010538 181 LLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN-----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKG-C 254 (508)
Q Consensus 181 ~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~-----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~-~ 254 (508)
+|++.++ ++++ .+++.+|++... +.+|.+++ +++|.++|++ +|+++|+|++|+ +
T Consensus 174 ~d~~~l~--~~~~-----~~~~aavi~eP~-~~~gg~~~~~~~~l~~l~~l~~~------------~g~llI~DEv~tg~ 233 (408)
T PRK04612 174 NDVEALE--AAMA-----GGDVAAVMLEPI-QGEGGVMPAAPGFLARVRALCDQ------------HDALLVLDEIQCGM 233 (408)
T ss_pred CCHHHHH--HhhC-----CCCEEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHH------------cCCEEEEeccccCC
Confidence 2567777 5553 234566666554 44555544 4455666665 999999999986 3
Q ss_pred CCCC--CCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCC
Q 010538 255 VTQP--PDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGT 330 (508)
Q Consensus 255 g~~~--~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt 330 (508)
|... ......++...+.++.|.++ + | +|+++++++..+.+.....+ .. .+
T Consensus 234 gr~G~~~a~~~~~~~pdi~t~~K~l~-~-G~piga~~~~~~~~~~~~~~~~~-----------------------~t-~~ 287 (408)
T PRK04612 234 GRTGTLFAHWQEQVTPDIVTLAKALG-G-GFPIGAMLAGPKVAETMQFGAHG-----------------------TT-FG 287 (408)
T ss_pred CcCCchhhhhhcCCCCCEEEEcchhc-C-CCceEEEEECHHHHhhhcCCCcC-----------------------CC-CC
Confidence 3321 11111234444455669887 4 3 79999888876555432110 01 12
Q ss_pred CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCC
Q 010538 331 ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGS 410 (508)
Q Consensus 331 ~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 410 (508)
.+....++..++++.+.+ +++.+++.++.++|.+.|+++.. ...++..... ++.++.+.+......
T Consensus 288 ~~p~~~aaa~a~L~~~~~---~~l~~~~~~~g~~l~~~l~~l~~-----~~~~i~~vrg------~Gl~~~i~~~~~~~~ 353 (408)
T PRK04612 288 GNPLAAAVARVALRKLAS---PQIAANVARQSAALRAGLEALNA-----EFGVFAQVRG------RGLMLGAVLAPAHAG 353 (408)
T ss_pred CCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHh-----hCCCeeeeec------cceEEEEEecCchhh
Confidence 345566666778887765 46778889999999999887621 1222222211 266777776421111
Q ss_pred ccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHH
Q 010538 411 WFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKV 490 (508)
Q Consensus 411 ~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~ 490 (508)
....+.+.+.++|+.+.+. ..+.+|+++++..|++||+.
T Consensus 354 --~a~~i~~~l~~~Gvlv~~~---------------------------------------g~~~lRl~Ppl~it~eeid~ 392 (408)
T PRK04612 354 --QAGAILDLAAEHGLLLLQA---------------------------------------GPDVLRFVPALNLTDAELAD 392 (408)
T ss_pred --HHHHHHHHHHHCCeEEeeC---------------------------------------CCCEEEEcCCccCCHHHHHH
Confidence 1235778888999998541 14689999999999999999
Q ss_pred HHHhhhhhhhh
Q 010538 491 NRCSSFDFVNF 501 (508)
Q Consensus 491 l~~~~~~~~~~ 501 (508)
+++.+.+.++.
T Consensus 393 ~l~~l~~~l~~ 403 (408)
T PRK04612 393 GLARLRLALAD 403 (408)
T ss_pred HHHHHHHHHHH
Confidence 99999887643
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.6e-11 Score=129.79 Aligned_cols=360 Identities=14% Similarity=0.079 Sum_probs=202.9
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC-CCCCCceEEEcCC
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN-ASMKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~-~~~~~~~i~~t~g 111 (508)
++.-|+|..+ .|--+|.+++++.+++. ... ..... .+ .......++.+++.+++. .+.+ .+.|+++
T Consensus 87 dG~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~-~~~-~~~~~--~~-~~~~~~~~lae~L~~~~~~~~~~--~v~f~~S 159 (504)
T PLN02760 87 NGKKYLDALAGLWCTALGGSEPRLVAAATEQLN-KLP-FYHSF--WN-RTTKPSLDLAKELLEMFTARKMG--KVFFTNS 159 (504)
T ss_pred CCCEEEEcCcCHHhcccCCCCHHHHHHHHHHHh-hcc-ceecc--cc-cCcHHHHHHHHHHHhhcCCCCCC--EEEEeCC
Confidence 6788999543 45558888888766542 211 00110 00 012334455566666643 3445 7999999
Q ss_pred hHHHHHHHHhhcC------C-CCCCeEEEec-ccccchHHHHHHHH------hcCC---eEEEEccCCccC--ccccccc
Q 010538 112 ATAALKLVGEAFP------W-SHQSSYMYTM-ENHNSVLGIREYAL------SQGA---AAFAIDVEEAVD--NDGLSES 172 (508)
Q Consensus 112 ~t~al~~~~~~l~------~-~~g~~vl~~~-~~h~s~~~~~~~~~------~~G~---~v~~v~~~~~~~--~~~l~~~ 172 (508)
+++|+..++.... - .....||... .-|.+....+.... .++. .+..++...... +..-
T Consensus 160 GsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--- 236 (504)
T PLN02760 160 GSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGE--- 236 (504)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCcccccCCCCC---
Confidence 9999998877552 1 1234555554 45555443332210 0110 012222110000 0000
Q ss_pred cccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEE
Q 010538 173 LVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLI 248 (508)
Q Consensus 173 ~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~viv 248 (508)
..........++++ +.+.+ ...+++..|++..+....|.+.| ++++.++|++ +|+++|+
T Consensus 237 -~~~~~~~~~~~~le--~~l~~--~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~------------~g~lLI~ 299 (504)
T PLN02760 237 -TEEEFSTRLADNLE--NLILK--EGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKK------------YDILFIA 299 (504)
T ss_pred -cHHHHHHHHHHHHH--HHHHh--cCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHH------------cCCEEEe
Confidence 00000000123344 33321 11246788899888888899999 8888888887 9999999
Q ss_pred eccc-cCCCCCC----CCCCCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCc
Q 010538 249 DAAK-GCVTQPP----DLSKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGV 322 (508)
Q Consensus 249 D~a~-~~g~~~~----d~~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~ 322 (508)
|+++ ++|..-. +......|+++++ |.+|+- ..+|.+++++++.+.+.+.....+
T Consensus 300 DEV~TGfGRtG~~~a~e~~gv~PDivtlg--K~lggG~~PigAv~~~~~i~d~~~~~~~~~~------------------ 359 (504)
T PLN02760 300 DEVICAFGRLGTMFGCDKYNIKPDLVSLA--KALSSAYMPIGAVLVSPEISDVIHSQSNKLG------------------ 359 (504)
T ss_pred cchhhCCcccchhhHHHhcCCCCcEEEec--ccccCCccccceEeecHHHHhhhhccccccc------------------
Confidence 9999 4543221 1112247887776 977631 016888899888765543200000
Q ss_pred cccccCCC--CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceE
Q 010538 323 EELFEDGT--ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMV 400 (508)
Q Consensus 323 ~~~~~~gt--~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 400 (508)
.....+| -|..++++..++++.+.+ +++.++.+++.++|++.|+++. ...++..-. -.+.++
T Consensus 360 -~~~h~~T~~gnPl~~Aaala~Le~i~~---~~l~~~~~~~g~~l~~~L~~l~------~~~~v~~vr------G~Gl~~ 423 (504)
T PLN02760 360 -SFAHGFTYSGHPVSCAVALEALKIYKE---RNIPEHVNKIAPRFQDGIKAFS------GSPIIGEIR------GTGLIL 423 (504)
T ss_pred -CcccCCCCCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHh------cCCCeeeEE------eCceEE
Confidence 0001112 245566677778888766 3568889999999999987752 111121111 126677
Q ss_pred EEEeeCCCCC-c-cC-----HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCc
Q 010538 401 SFNLKRPDGS-W-FG-----YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTG 473 (508)
Q Consensus 401 ~~~~~~~~~~-~-~~-----~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (508)
.+.+.+.... + +. ...+.+.+.++||.+.+. ..
T Consensus 424 gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~----------------------------------------g~ 463 (504)
T PLN02760 424 GTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLVRVA----------------------------------------GD 463 (504)
T ss_pred EEEEecCCcccccccchhHHHHHHHHHHHhCCcEEEec----------------------------------------CC
Confidence 7776432210 0 10 234667778899998652 24
Q ss_pred eEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 474 AIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 474 ~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
.+|+++.+-.|++||+++++++.+.++.
T Consensus 464 ~lrl~Ppl~it~eeid~~~~~l~~al~~ 491 (504)
T PLN02760 464 NIMMSPPLIITPEEVDELISIYGKALKA 491 (504)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999998877644
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.6e-11 Score=124.75 Aligned_cols=351 Identities=11% Similarity=0.042 Sum_probs=191.2
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCC-CCceEEEcCC
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASM-KDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~-~~~~i~~t~g 111 (508)
++..|+|..+. +--+|.+.+++.++.. .. ....... .. . ....++-+.+++..+.+. + .++|+++
T Consensus 39 dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~~~~-~~-~~~~~~~-~~--~-~~~~~la~~l~~~~~~~~~~--~~~f~~s 110 (425)
T PRK08088 39 EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLK-KL-SHTCFQV-LA--Y-EPYLELCEKMNQKVPGDFAK--KTLLVTT 110 (425)
T ss_pred CCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHh-hC-CCccccc-cC--C-HHHHHHHHHHHHhCCCCCCC--EEEEeCC
Confidence 77888998543 4448888887765442 21 1111110 00 1 112244555666665433 3 6888888
Q ss_pred hHHHHHHHHhhcC--CCCCCeEEEecccccchHHHHHHHHh-----cCC-----eEEE--EccCCccCcccccccccccc
Q 010538 112 ATAALKLVGEAFP--WSHQSSYMYTMENHNSVLGIREYALS-----QGA-----AAFA--IDVEEAVDNDGLSESLVTST 177 (508)
Q Consensus 112 ~t~al~~~~~~l~--~~~g~~vl~~~~~h~s~~~~~~~~~~-----~G~-----~v~~--v~~~~~~~~~~l~~~~~~~~ 177 (508)
+++|+..++.... ..++..|.....-|.........-.. .|. .+.. +|.+..+ .
T Consensus 111 Gsea~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~----------- 178 (425)
T PRK08088 111 GSEAVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHG-V----------- 178 (425)
T ss_pred cHHHHHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCccccC-c-----------
Confidence 8887765544331 22334444444444444333222100 000 0011 1111110 0
Q ss_pred ccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecccc
Q 010538 178 KISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKG 253 (508)
Q Consensus 178 ~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~ 253 (508)
....+++.++ +.+++. ...++.+.|++..+....|.+.+ .++|.++|++ +|+++|+|++++
T Consensus 179 ~~~~~~~~l~--~~l~~~-~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~------------~~~~lI~Dev~~ 243 (425)
T PRK08088 179 SEDDAIASIE--RIFKND-AAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDE------------HGIMLIADEVQT 243 (425)
T ss_pred cHHHHHHHHH--HHHHhc-cCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHH------------cCCEEEEecccc
Confidence 0001244566 544310 11346778888777777777766 5666666665 999999999987
Q ss_pred C-CCCC--CCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccC
Q 010538 254 C-VTQP--PDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFED 328 (508)
Q Consensus 254 ~-g~~~--~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (508)
. |... ..+...+++.-+.|++|.++ | | +|++++++++++.+.....+ ..
T Consensus 244 g~g~~g~~~~~~~~~~~pdi~s~sK~l~-~-G~rig~v~~~~~~~~~~~~~~~~------------------------~t 297 (425)
T PRK08088 244 GAGRTGTLFAMEQMGVAADLTTFAKSIA-G-GFPLAGVTGRAEVMDAIAPGGLG------------------------GT 297 (425)
T ss_pred CCCcCcchhHHhhcCCCCCEEEEecccc-C-CCcceeeEecHHHHhhcCCCCCC------------------------CC
Confidence 3 2221 11112233333577789888 6 4 89999999887766532110 11
Q ss_pred CCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCC
Q 010538 329 GTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPD 408 (508)
Q Consensus 329 gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 408 (508)
.+.+....++..+.++.... +.+.++.+++.+++.+.|.++.. ..+.+.-+ .+ .+.++++.+.+..
T Consensus 298 ~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~v--~g-------~G~~~~l~l~~~~ 363 (425)
T PRK08088 298 YAGNPIACAAALAVLKVFEQ---ENLLQKANALGEKLKDGLLAIAE--KHPEIGDV--RG-------LGAMIAIELFEDG 363 (425)
T ss_pred CCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHH--hCCCeEEE--ec-------cceEEEEEEecCC
Confidence 12344445555556665433 45666666777777776665421 00222111 11 1778888884321
Q ss_pred C----CccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCC
Q 010538 409 G----SWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMST 484 (508)
Q Consensus 409 ~----~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t 484 (508)
. .......+.+.+.++||.+.++.. ..+.+|+++....|
T Consensus 364 ~~~~p~~~~~~~l~~~~~~~Gv~~~~~~~-------------------------------------~~~~iRl~~~~~~t 406 (425)
T PRK08088 364 DHSKPNAKLTAQIVARARDKGLILLSCGP-------------------------------------YYNVLRILVPLTIE 406 (425)
T ss_pred CCCCCCHHHHHHHHHHHHhCCCEEecCCC-------------------------------------CCCEEEEECCCCcC
Confidence 1 111234577888889998765211 14679999999999
Q ss_pred HHHHHHHHHhhhhhhhh
Q 010538 485 FEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 485 ~eev~~l~~~~~~~~~~ 501 (508)
.+|++..++.+.+.++.
T Consensus 407 ~~ei~~~i~~l~~~l~~ 423 (425)
T PRK08088 407 DAQIRQGLEIIAQCFDE 423 (425)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999987753
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.9e-11 Score=123.21 Aligned_cols=356 Identities=12% Similarity=0.036 Sum_probs=198.7
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCC-CCCCceEEEcCC
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA-SMKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~-~~~~~~i~~t~g 111 (508)
++.-|+|..+. +--+|.+++++.+++. .. ........ ......++-+++++++.. ..+ .+.|+++
T Consensus 31 dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~ql~-~~-~~~~~~~~----~~~~~~~la~~l~~~~p~~~~~--~v~f~~s 102 (420)
T TIGR00700 31 DGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVA-EF-THTCFMVT----PYEGYVALAEKLNRIAPGSGPK--KSVFFNS 102 (420)
T ss_pred CCCEEEECccCHHhccCCCCCHHHHHHHHHHHH-hc-cCcccccc----CChHHHHHHHHHHHhCCCCCCC--EEEEeCC
Confidence 67889997433 5558889888766543 21 11111101 112233445556666642 234 7999999
Q ss_pred hHHHHHHHHhhcC-CCCCCeEEEecccc-cchHHHHHHHH-----hcC-----CeEEEEccCCccCcccccccccccccc
Q 010538 112 ATAALKLVGEAFP-WSHQSSYMYTMENH-NSVLGIREYAL-----SQG-----AAAFAIDVEEAVDNDGLSESLVTSTKI 179 (508)
Q Consensus 112 ~t~al~~~~~~l~-~~~g~~vl~~~~~h-~s~~~~~~~~~-----~~G-----~~v~~v~~~~~~~~~~l~~~~~~~~~~ 179 (508)
+++|+..++.... ..+...|+.....| ........... ..+ ..+..+|........ .. ......
T Consensus 103 GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~ 178 (420)
T TIGR00700 103 GAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDG-LL---DKQLST 178 (420)
T ss_pred cHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCcccccc-cc---ccchhH
Confidence 9999988766432 23445566555433 33333332110 011 112223321100000 00 000000
Q ss_pred ccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEeccccC-
Q 010538 180 SLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC- 254 (508)
Q Consensus 180 ~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~- 254 (508)
..+++.++ +.+.. ....+++..|++..+...+|.+.| +++|.++|++ ||+++|+|+++..
T Consensus 179 ~~~~~~~~--~~~~~-~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~------------~gillI~DEV~tg~ 243 (420)
T TIGR00700 179 DGELAAAR--AIFVI-DVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCRE------------HGIVFIADEVQTGF 243 (420)
T ss_pred HHHHHHHH--HHHHh-hcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHH------------cCCEEEEEecccCC
Confidence 11234455 33310 112367899999989999999888 5666666766 9999999999863
Q ss_pred CCCC--CCCC--CCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccC
Q 010538 255 VTQP--PDLS--KYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFED 328 (508)
Q Consensus 255 g~~~--~d~~--~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (508)
|... ..+. ....|+++ ++|.++ + | +|++++++++.+.+.+...+. .
T Consensus 244 gr~g~~~a~~~~~~~pDi~~--lsK~l~-~-G~pig~v~~~~~i~~~~~~~~~~~------------------------T 295 (420)
T TIGR00700 244 ARTGAMFACEHEGPEPDLIT--TAKSLA-D-GLPLSGVTGRAEIMDAPAPGGLGG------------------------T 295 (420)
T ss_pred cccchhHHHhhcCCCCCEEE--eecccc-C-CcceEEEEecHHHHhhcCCCCcCC------------------------C
Confidence 2211 1111 22467665 569887 4 4 899999998876654321111 1
Q ss_pred CCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCC
Q 010538 329 GTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPD 408 (508)
Q Consensus 329 gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 408 (508)
.+.|....++..++++++.+. .+.++..++.+++++.|+++.. ..+.+.-+.. .+.++++.+.+.+
T Consensus 296 ~~~~pl~~aaa~a~l~~l~~~---~~~~~~~~~g~~l~~~L~~l~~--~~~~~~~vrg---------~G~~~~i~~~~~~ 361 (420)
T TIGR00700 296 YAGNPLACAAALAVLAIIESE---GLIERARQIGRLVTDRLTTLKA--VDPRIGDVRG---------LGAMIAVELVDPG 361 (420)
T ss_pred CCcCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHh--hCCCEEEeec---------cceEEEEEEecCC
Confidence 123445566666678877654 4556677777777777765421 0022222211 2677777764321
Q ss_pred CCc---cCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCH
Q 010538 409 GSW---FGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTF 485 (508)
Q Consensus 409 ~~~---~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ 485 (508)
... -....+.+.+.++||.+.++..+ .+.+|+++..-.|.
T Consensus 362 ~~~~~~~~~~~l~~~~~~~Gv~i~p~~~f-------------------------------------~~~lRl~p~l~~~~ 404 (420)
T TIGR00700 362 TTEPDAGLAERIATAAHAAGLLLLTCGMF-------------------------------------GNIIRFLPPLTIGD 404 (420)
T ss_pred CCCccHHHHHHHHHHHHHCCeEEeccCCC-------------------------------------CCEEEEECCCCcCH
Confidence 100 01234556667899999875311 36899999887899
Q ss_pred HHHHHHHHhhhhhhh
Q 010538 486 EDAKVNRCSSFDFVN 500 (508)
Q Consensus 486 eev~~l~~~~~~~~~ 500 (508)
+++++.++.+.++++
T Consensus 405 ~~l~~~~~~l~~~l~ 419 (420)
T TIGR00700 405 ELLSEGLDILCAILA 419 (420)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999887763
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.9e-11 Score=123.87 Aligned_cols=355 Identities=13% Similarity=0.064 Sum_probs=199.0
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC-CCCceEEEcCC
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS-MKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~~~i~~t~g 111 (508)
++.-|+|..+. +--+|.+++++.+++. ... ....... ......++-+++++++... .+ .+.|+++
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~-~l~-~~~~~~~----~~~~~~~la~~l~~~~p~~~~~--~v~f~~S 109 (425)
T PRK07495 38 EGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLD-RFT-HTCHQVV----PYENYVRLAERLNALVPGDFAK--KTIFVTT 109 (425)
T ss_pred CCCEEEEccccHHhhccCCCCHHHHHHHHHHHh-hcc-CcccCcc----CCHHHHHHHHHHHHhCCCCCCC--EEEECCc
Confidence 78889997443 5568888888766442 211 1111001 1223344556666766533 24 7999999
Q ss_pred hHHHHHHHHhhcC-CCCCCeEEEeccc-ccchHHHHHHHH-----hcC-----CeEEEEccCCccC-ccccccccccccc
Q 010538 112 ATAALKLVGEAFP-WSHQSSYMYTMEN-HNSVLGIREYAL-----SQG-----AAAFAIDVEEAVD-NDGLSESLVTSTK 178 (508)
Q Consensus 112 ~t~al~~~~~~l~-~~~g~~vl~~~~~-h~s~~~~~~~~~-----~~G-----~~v~~v~~~~~~~-~~~l~~~~~~~~~ 178 (508)
+++|+..++.... ..+...|+..... |........... +.+ ..+..+|...... .+
T Consensus 110 GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----------- 178 (425)
T PRK07495 110 GAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVELHGVS----------- 178 (425)
T ss_pred hHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCccccccc-----------
Confidence 9999988776432 2344566665543 333322222100 001 1233344322100 00
Q ss_pred cccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCcccc-CHHHHHHHHcCCccccccCCCCCCCeEEEEecccc-CCC
Q 010538 179 ISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRF-NLDLINIMKKNPERILEISPFSKGRWMVLIDAAKG-CVT 256 (508)
Q Consensus 179 ~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~-~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~-~g~ 256 (508)
.....+.++ +.+.+ ....++++.|++..+...+|.+. |.+.+.++.+ +|+++|+++|+|+++. +|.
T Consensus 179 ~~~~~~~l~--~~~~~-~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~---------l~~~~g~llI~DEv~tG~gr 246 (425)
T PRK07495 179 VEQSLAALD--KLFKA-DVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRE---------LCDQHGILLIADEVQTGFAR 246 (425)
T ss_pred HHHHHHHHH--HHHHh-ccCCCceEEEEECCccCCCCCccCCHHHHHHHHH---------HHHHcCCEEEEechhhcCCc
Confidence 001233444 33321 01134678888877777788554 4443333333 4445999999999986 322
Q ss_pred CC--CCCCCC--CCcEEEEeccccccCCC-cceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCC
Q 010538 257 QP--PDLSKY--PVDFVVMSFYKIFGYPT-GLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTA 331 (508)
Q Consensus 257 ~~--~d~~~~--~~D~~~~S~~K~~g~P~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 331 (508)
.. .-.... ..|+++ +.|.++ ++ -+|++++++++.+.+.+...+ .....
T Consensus 247 ~G~~~a~~~~gv~pDi~t--lsK~l~-~G~pigav~~~~~i~~~~~~~~~~------------------------~T~~~ 299 (425)
T PRK07495 247 TGKLFAMEHHEVAADLTT--MAKGLA-GGFPLAAVTGRAEIMDAPGPGGLG------------------------GTYGG 299 (425)
T ss_pred CCCceeecccCCCCCEEe--ehhhhc-CCccceEEEEcHHHHhccCCCCcC------------------------CCCCC
Confidence 21 111222 356554 459777 31 179999998887655432110 01123
Q ss_pred ChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCc
Q 010538 332 SFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSW 411 (508)
Q Consensus 332 ~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 411 (508)
|....++..++++++.+ ..+.++.+++.++|.+.|+++.. .+..+..-. -.+.++++.+.+.+...
T Consensus 300 ~pl~~aaa~a~l~~l~~---~~l~~~~~~~g~~l~~~L~~l~~-----~~~~i~~vr------G~Gl~~~iel~~~~~~~ 365 (425)
T PRK07495 300 NPLGIAAAHAVLDVIEE---EDLCERANQLGNRLKQRLASLRE-----TVPEIADIR------GPGFMNAVEFNDADSGL 365 (425)
T ss_pred CHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHHHHHHHh-----hCCCeeeee------cCceEEEEEEecCCCCC
Confidence 45556666678888865 35778888888888888876521 111111111 12678888875432111
Q ss_pred cC---HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHH
Q 010538 412 FG---YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDA 488 (508)
Q Consensus 412 ~~---~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev 488 (508)
.+ ...+.+.+.++|+.+... .. ..+.+|+.+.+-.|++|+
T Consensus 366 ~~~~~~~~~~~~~~~~Gvl~~~~---g~----------------------------------~~~~~r~~Ppl~it~~~i 408 (425)
T PRK07495 366 PSAEFANRVRLKALEKGLILLTC---GV----------------------------------HGNVIRFLAPITIQDDVF 408 (425)
T ss_pred ccHHHHHHHHHHHHHCCeEEeec---CC----------------------------------CCCEEEEeCCCccCHHHH
Confidence 11 234677777899998541 00 147899999999999999
Q ss_pred HHHHHhhhhhhhhh
Q 010538 489 KVNRCSSFDFVNFS 502 (508)
Q Consensus 489 ~~l~~~~~~~~~~~ 502 (508)
+++++.+.+.++-+
T Consensus 409 d~~~~~l~~~l~~~ 422 (425)
T PRK07495 409 AEALDILEASILEA 422 (425)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999877543
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.1e-11 Score=125.40 Aligned_cols=360 Identities=11% Similarity=0.009 Sum_probs=201.8
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+. |--+|.+++++.+++ ......+...+ ......++.+++++++....+ .|.|++++
T Consensus 47 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql-~~l~~~~~~~~-----~~~~~~~la~~L~~~~p~~~~--~v~f~~sG 118 (445)
T PRK09221 47 DGRKILDGTAGLWCCNAGHGRPEIVEAVARQA-ATLDYAPAFQM-----GHPLAFELAERLAELAPGGLD--HVFFTNSG 118 (445)
T ss_pred CCCEEEEccccHhhccCCCCCHHHHHHHHHHH-HhccCcccccc-----CCHHHHHHHHHHHHhCCCCCC--EEEEeCCc
Confidence 67889997443 556888888876544 32111111111 122334456667777654345 79999999
Q ss_pred HHHHHHHHhhcC-C-----C-CCCeEEEecccc-cchHHHHHH------HHhcC---CeEEEEccCC-cc--Cccccccc
Q 010538 113 TAALKLVGEAFP-W-----S-HQSSYMYTMENH-NSVLGIREY------ALSQG---AAAFAIDVEE-AV--DNDGLSES 172 (508)
Q Consensus 113 t~al~~~~~~l~-~-----~-~g~~vl~~~~~h-~s~~~~~~~------~~~~G---~~v~~v~~~~-~~--~~~~l~~~ 172 (508)
++|+..++.... + + ...+||.....| ......... ...++ ..+..+|... .. ....
T Consensus 119 seAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 194 (445)
T PRK09221 119 SESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSK---- 194 (445)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCC----
Confidence 999988766432 1 1 234566655433 222222111 00001 1122333211 00 0000
Q ss_pred cccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEE
Q 010538 173 LVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLI 248 (508)
Q Consensus 173 ~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~viv 248 (508)
.....-....+.++ +.+++. ..+++..|++..+....|.+.| ++++.++|++ +|+++|+
T Consensus 195 -~~~~~~~~~~~~l~--~~i~~~--~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~------------~g~llI~ 257 (445)
T PRK09221 195 -GQPEHGAELADDLE--RLVALH--DASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDK------------HGILLIF 257 (445)
T ss_pred -ChHHHHHHHHHHHH--HHHHhc--CCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHH------------cCCEEEE
Confidence 00000000123444 333211 1256889999999999999999 8888888887 9999999
Q ss_pred ecccc-CCCC--CCCCC--CCCCcEEEEeccccccC--CCcceEEEEechhHhhhccccccCceEEecccchhhhhhccC
Q 010538 249 DAAKG-CVTQ--PPDLS--KYPVDFVVMSFYKIFGY--PTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQG 321 (508)
Q Consensus 249 D~a~~-~g~~--~~d~~--~~~~D~~~~S~~K~~g~--P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~ 321 (508)
|++|+ +|.. ..-.. ....|++++| |.+++ .+ +|.++++++..+.+...-..... +
T Consensus 258 DEV~tG~GRtG~~~~~~~~gv~PDi~~~g--K~l~gG~~P-i~av~~~~~i~~~~~~~~~~~~~---------~------ 319 (445)
T PRK09221 258 DEVITGFGRLGAAFAAERFGVTPDIITFA--KGLTNGAIP-MGAVIASDEIYDAFMQGPEYAIE---------F------ 319 (445)
T ss_pred eehhhCCCcCchhhHHHhcCCCCCEEEec--cccccCccc-ceeeEEcHHHHHhhccCcccccc---------c------
Confidence 99984 4421 11112 2235887766 86652 21 68888888876655321000000 0
Q ss_pred ccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEE
Q 010538 322 VEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVS 401 (508)
Q Consensus 322 ~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 401 (508)
..... .+.|...+++..++++.+.+. .+.++..++.++|++.|+++. ....+.+-.. .+.+..
T Consensus 320 -~~~~T-~~~~pl~~aaa~a~L~~i~~~---~l~~~~~~~g~~l~~~l~~l~------~~~~v~~vrg------~Gl~~~ 382 (445)
T PRK09221 320 -FHGYT-YSAHPVACAAGLATLDIYREE---DLFERAAELAPYFEDAVHSLK------GLPHVIDIRN------IGLVAG 382 (445)
T ss_pred -ccccC-CCcCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhhc------cCCCEEEEec------CceEEE
Confidence 00011 113445566666788887653 467899999999999998762 1111111111 145555
Q ss_pred EEeeCCCC-CccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecC
Q 010538 402 FNLKRPDG-SWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFG 480 (508)
Q Consensus 402 ~~~~~~~~-~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~ 480 (508)
+.+..... .......+.+.+.++||.++.+ .+.+|+++.
T Consensus 383 v~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~----------------------------------------~~~lr~~Pp 422 (445)
T PRK09221 383 IELAPRPGAPGARGYEAFMKCFEKGLLVRYT----------------------------------------GDTIALSPP 422 (445)
T ss_pred EEEecccccccchHHHHHHHHHHCCeEEeec----------------------------------------CCEEEEECC
Confidence 55543211 1011234778888899998642 357999999
Q ss_pred CCCCHHHHHHHHHhhhhhhhhh
Q 010538 481 YMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 481 ~~~t~eev~~l~~~~~~~~~~~ 502 (508)
+.+|++||+++++.+.+.++-+
T Consensus 423 l~~t~~eid~~~~~l~~~l~~~ 444 (445)
T PRK09221 423 LIIEKAQIDELVDALGDALRAV 444 (445)
T ss_pred ccCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999887543
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.8e-11 Score=124.24 Aligned_cols=358 Identities=11% Similarity=0.069 Sum_probs=202.3
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC-CCCceEEEcCC
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS-MKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~~~i~~t~g 111 (508)
++.-|+|..+ .+--+|.+++++.++.. ... ....... ..+...++.+++++++... .+ .|.|+++
T Consensus 40 dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~-~~~-~~~~~~~----~~~~~~~lae~L~~~~p~~~~~--~v~f~~S 111 (445)
T PRK08593 40 DGKTYIDLLASASSQNVGHAPPRVVEAIKAQAD-KFI-HYTPAYM----YHEPLVRLAKKLCELAPGDFEK--RVTFGLS 111 (445)
T ss_pred CCCEEEECCccHHhhcCCCCCHHHHHHHHHHHH-hcc-Ccccccc----CCHHHHHHHHHHHHhCCCCCCC--EEEECCc
Confidence 7888999733 34457888888766542 211 1111100 1233455666777776543 24 7999999
Q ss_pred hHHHHHHHHhhcC-CCCCCeEEEecc-cccchHHHHHHHH-----h--cC---CeEEEEccCCccC--cccccccccccc
Q 010538 112 ATAALKLVGEAFP-WSHQSSYMYTME-NHNSVLGIREYAL-----S--QG---AAAFAIDVEEAVD--NDGLSESLVTST 177 (508)
Q Consensus 112 ~t~al~~~~~~l~-~~~g~~vl~~~~-~h~s~~~~~~~~~-----~--~G---~~v~~v~~~~~~~--~~~l~~~~~~~~ 177 (508)
+++|+..++.... ..+...||.... -|......+.... + .+ ..+..+|...... .... ..+
T Consensus 112 GseA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-----~~~ 186 (445)
T PRK08593 112 GSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEP-----DAN 186 (445)
T ss_pred hHHHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCC-----cHH
Confidence 9999998776432 233455665543 4444433332211 0 01 1133344321100 0000 000
Q ss_pred ccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecccc
Q 010538 178 KISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKG 253 (508)
Q Consensus 178 ~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~ 253 (508)
.....++.++ +.+++. ...+++..|++..+....|.+.| ++++.++|++ +|+++|+|+++.
T Consensus 187 ~~~~~~~~~~--~~~~~~-~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~------------~g~llI~DEv~t 251 (445)
T PRK08593 187 FVEEYLAPLK--EMFEKY-LPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCRE------------HGILFAVDDIQQ 251 (445)
T ss_pred HHHHHHHHHH--HHHHhh-cCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHH------------cCCEEEEechhh
Confidence 0000123333 222110 01356899999999998899877 6677777776 999999999984
Q ss_pred -CCCCCC----CCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccC
Q 010538 254 -CVTQPP----DLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFED 328 (508)
Q Consensus 254 -~g~~~~----d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (508)
+|..-. +......|++++ .|.+++-..+|+++.++++.+.+.+... .+ .
T Consensus 252 g~GrtG~~~a~~~~gv~pDi~t~--gK~l~~G~p~gav~~~~~i~~~~~~~~~-----------------------~~-T 305 (445)
T PRK08593 252 GLGRTGKWSSISHFNITPDLMSF--GKSLAGGMPMSAIVGRKEIMESLEAPAH-----------------------LF-T 305 (445)
T ss_pred CCCcCchHHHHHhcCCCCCEeee--cccccCCcccEEEEEcHHHHhhhccCCC-----------------------CC-C
Confidence 432211 111224687765 5976621117999999888765542100 01 1
Q ss_pred CCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCC
Q 010538 329 GTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPD 408 (508)
Q Consensus 329 gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 408 (508)
...|....++..++++.+.+ +++.++..++.++|++.|+++.. ...+++.-.. .+.++.+.+....
T Consensus 306 ~~~~pl~~aaa~a~l~~l~~---~~l~~~~~~~g~~l~~~L~~l~~-----~~~~v~~vrG------~Gl~~gi~l~~~~ 371 (445)
T PRK08593 306 TGANPVSCAAALATIDMIED---ESLLQRSAEKGEYARKRFDQWVS-----KYNFVGDVRG------YGLSIGIDIVSDK 371 (445)
T ss_pred CCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHh-----cCCcEEEEec------cceEEEEEEecCC
Confidence 12344556666778887765 35678888888888888876521 1111221111 2555566654211
Q ss_pred C----CccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCC
Q 010538 409 G----SWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMST 484 (508)
Q Consensus 409 ~----~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t 484 (508)
. ..-....+.+.+.++||.+.+. ..+.+|+++.+.+|
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~Gv~~~~~---------------------------------------~~~~lr~~p~l~~t 412 (445)
T PRK08593 372 KLKTRDNEAALKICNYCFEHGVVIIAV---------------------------------------AGNVLRFQPPLVIT 412 (445)
T ss_pred CcCCCcHHHHHHHHHHHHHCCeEEecc---------------------------------------CCCEEEEECCCccC
Confidence 0 0001234777788899987541 13689999999999
Q ss_pred HHHHHHHHHhhhhhhhhhh
Q 010538 485 FEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 485 ~eev~~l~~~~~~~~~~~~ 503 (508)
++||+++++++.+.++.++
T Consensus 413 ~~~id~~~~~l~~~l~~~~ 431 (445)
T PRK08593 413 YEQLDTALNTIEQAFTALE 431 (445)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999998876543
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.7e-11 Score=124.40 Aligned_cols=359 Identities=14% Similarity=0.104 Sum_probs=200.5
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+ .+.-+|.+++++.++. .... . .+... + .......++.++++++++...+ .+.|++++
T Consensus 52 dG~~ylD~~~g~~~~~lGh~hp~v~~A~~~q~-~~~~-~-~~~~~-~-~~~~~~~~lae~L~~~~p~~~~--~v~f~~SG 124 (460)
T PRK12403 52 DGKRYLDGMSGLWCTNLGYGRKDLAAAAARQM-EQLP-Y-YNMFF-H-TTHPAVIELSELLFSLLPGHYS--HAIYTNSG 124 (460)
T ss_pred CCCEEEECchhHHhhcCCCCCHHHHHHHHHHH-HhCC-C-eeccc-c-cCCHHHHHHHHHHHHhCCCCcC--EEEEeCCc
Confidence 7788999432 3445788888876654 2211 0 11110 0 1133455667778888865445 79999999
Q ss_pred HHHHHHHHhhcC------CCCCCeEEEeccc--ccchHHHHHHHHhc-----C---CeEEEEccCCccCc-ccccccccc
Q 010538 113 TAALKLVGEAFP------WSHQSSYMYTMEN--HNSVLGIREYALSQ-----G---AAAFAIDVEEAVDN-DGLSESLVT 175 (508)
Q Consensus 113 t~al~~~~~~l~------~~~g~~vl~~~~~--h~s~~~~~~~~~~~-----G---~~v~~v~~~~~~~~-~~l~~~~~~ 175 (508)
++|+..++.... -+++..++++... |.+........... + ..+..+|....... .++ ..
T Consensus 125 seA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~----~~ 200 (460)
T PRK12403 125 SEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGEL----TP 200 (460)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccccCC----Ch
Confidence 999998877652 1223445444333 66655443321100 0 01222321100000 000 00
Q ss_pred ccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecc
Q 010538 176 STKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAA 251 (508)
Q Consensus 176 ~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a 251 (508)
...-....+.++ +.+.+ ...+++..|++..+....|.+.| ++.+.++|++ +|+++|+|++
T Consensus 201 ~~~~~~~~~~le--~~~~~--~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~------------~g~lLI~DEV 264 (460)
T PRK12403 201 AEFGRRAALQLE--EKILE--LGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQ------------YDVLLCADEV 264 (460)
T ss_pred HHHHHHHHHHHH--HHHHH--hCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHH------------cCCEEEEecc
Confidence 000000123333 22211 11246788889889888899988 7788888887 9999999999
Q ss_pred cc-CCCCCC----CCCCCCCcEEEEeccccccCCC-cceEEEEechhHhhhccccccCceEEecccchhhhhhccCcccc
Q 010538 252 KG-CVTQPP----DLSKYPVDFVVMSFYKIFGYPT-GLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEEL 325 (508)
Q Consensus 252 ~~-~g~~~~----d~~~~~~D~~~~S~~K~~g~P~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 325 (508)
|+ +|..-. +.-....|++++ .|.+++-. -+|.++++++..+.+.+. +. ..
T Consensus 265 ~tGfGRtG~~~a~e~~gv~PDiv~~--gK~lggG~~Piga~v~~~~i~~~~~~~--~~--------------------~~ 320 (460)
T PRK12403 265 IGGFGRTGEWFAHEHFGFEPDTLSI--AKGLTSGYVPMGGLVLSKRIAEALVEQ--GG--------------------VF 320 (460)
T ss_pred ccCCCcCchhhhhhhcCCCCCeEEE--cccccccccceEEEEECHHHHHHHhcC--CC--------------------cc
Confidence 85 332211 111223699975 49666211 268888888876554321 00 00
Q ss_pred ccCCC--CChhHHHHHHHHHHHHHhcChHHHHHHHH-HHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEE
Q 010538 326 FEDGT--ASFLSIASIRHGFNLINSLTVPAICRHIA-SLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSF 402 (508)
Q Consensus 326 ~~~gt--~~~~~~~~l~~al~~~~~~g~~~i~~~~~-~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 402 (508)
...+| .|..+.++..++++.+.+. .+.++.. ++.++|++.|+++.. ...+++.-.. .+.++.+
T Consensus 321 ~~~~T~~gnPl~~Aaala~L~~i~~~---~l~~~~~~~~g~~l~~~L~~l~~-----~~~~i~~vrG------~Gl~~gi 386 (460)
T PRK12403 321 AHGLTYSGHPVAAAVAIANLKALRDE---GVVTRVKDDTGPYLQRCLREVFG-----DHPLVGEVQG------AGLVAAL 386 (460)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHh-----cCCCEEeEee------cceEEEE
Confidence 01223 4566677777788887664 3566775 777888777765421 1112222111 2677777
Q ss_pred EeeCCCC--CccC-----HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceE
Q 010538 403 NLKRPDG--SWFG-----YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAI 475 (508)
Q Consensus 403 ~~~~~~~--~~~~-----~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i 475 (508)
.+..... ..+. ...+.+.+.++|+.+.+. .+.+
T Consensus 387 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~----------------------------------------~~~~ 426 (460)
T PRK12403 387 QFAEDKATRKRFANENDLAWRCRTIGFEEGVIIRST----------------------------------------LGRM 426 (460)
T ss_pred EEccCccccccccchhHHHHHHHHHHHhCCEEEEec----------------------------------------CCEE
Confidence 7743211 1111 112344556789998641 2458
Q ss_pred EEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 476 RVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 476 Ris~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
|+++.+-.|++|++++++.+.+.++-+
T Consensus 427 ~l~Ppl~it~~eid~~~~~l~~al~~~ 453 (460)
T PRK12403 427 IMAPALVAGRAEIDELVDKTRIAVDRT 453 (460)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988765
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.4e-11 Score=124.11 Aligned_cols=349 Identities=13% Similarity=0.104 Sum_probs=197.2
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCC-CCCCceEEEcCC
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA-SMKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~-~~~~~~i~~t~g 111 (508)
++.-|+|..+. +--+|.+++++.+++ ... ........ ......++-+++++++.. ..+ .+.|+++
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql-~~~-~~~~~~~~----~~~~~~~la~~l~~~~p~~~~~--~~~f~~s 109 (421)
T PRK06777 38 EGREYIDFAAGIAVLNTGHRHPKVVAAVRQQL-DQF-THTAYQIV----PYASYVTLAERINALAPIDGPA--KTAFFTT 109 (421)
T ss_pred CCCEEEEcccCHHhhccCCCCHHHHHHHHHHH-hhc-cccccccc----CChHHHHHHHHHHHhCCCCCCc--eEEEeCC
Confidence 78889997443 556888888876544 321 11111101 112233444666677653 234 7999999
Q ss_pred hHHHHHHHHhhcC-CCCCCeEEEeccc-ccchHHHHHHHHh-----cC-----CeEEEEccCCccCcccccccccccccc
Q 010538 112 ATAALKLVGEAFP-WSHQSSYMYTMEN-HNSVLGIREYALS-----QG-----AAAFAIDVEEAVDNDGLSESLVTSTKI 179 (508)
Q Consensus 112 ~t~al~~~~~~l~-~~~g~~vl~~~~~-h~s~~~~~~~~~~-----~G-----~~v~~v~~~~~~~~~~l~~~~~~~~~~ 179 (508)
+|+|+..++.... ..+...|+..... |............ .+ ..+..+|......-. .-
T Consensus 110 GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~----------~~ 179 (421)
T PRK06777 110 GAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGV----------SV 179 (421)
T ss_pred cHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCc----------CH
Confidence 9999988766432 3344566665543 3333333221100 00 011122211100000 00
Q ss_pred ccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCcc-ccC---HHHHHHHHcCCccccccCCCCCCCeEEEEeccccC-
Q 010538 180 SLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGS-RFN---LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC- 254 (508)
Q Consensus 180 ~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~-~~~---i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~- 254 (508)
..+++.++ +.+++. ...+++..|++..+....|. +.| +++|.++|++ +|+++|+|+++..
T Consensus 180 ~~~~~~l~--~~~~~~-~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~------------~g~llI~DEv~tg~ 244 (421)
T PRK06777 180 EEALSSVE--RLFKAD-IAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDE------------HGILLIADEVQTGF 244 (421)
T ss_pred HHHHHHHH--HHHHhc-cCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHH------------cCCEEEEechhhCC
Confidence 11244455 444210 11356788889888888886 456 4455555554 9999999999873
Q ss_pred CCCC--CCCC--CCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccC
Q 010538 255 VTQP--PDLS--KYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFED 328 (508)
Q Consensus 255 g~~~--~d~~--~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (508)
|... .... ....|+++ +.|.++ + | +|+++.++++.+.+.+...+. .
T Consensus 245 gr~g~~~~~~~~~~~pDiv~--~sK~l~-~-G~pigav~~~~~i~~~~~~~~~~~------------------------T 296 (421)
T PRK06777 245 ARTGKLFAMEYYDVKPDLIT--MAKSLG-G-GMPISAVVGRAEVMDAPAPGGLGG------------------------T 296 (421)
T ss_pred ccCCchhhhhhcCCCCCEEe--eehhhc-C-CCceEEEEEcHHHHhccCCCCCCC------------------------C
Confidence 2211 1112 22467664 669887 4 4 899999988876554331110 1
Q ss_pred CCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCC
Q 010538 329 GTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPD 408 (508)
Q Consensus 329 gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 408 (508)
...|....++..++++.+.+ +.+.++.+++.++|.+.|+++.. ..+.+.-+.+ .+.++.+.+....
T Consensus 297 ~~~~p~~~aaa~a~L~~~~~---~~l~~~~~~~g~~l~~~L~~l~~--~~~~i~~vrg---------~G~~~~i~~~~~~ 362 (421)
T PRK06777 297 YAGNPLAVAAALAVLDVIAE---EKLCQRALILGAHLVEVLEKAKA--SCPAIVDIRA---------RGSMVAVEFNDPQ 362 (421)
T ss_pred CCcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHH--hCCCeEEecC---------ceEEEEEEEecCc
Confidence 12355566777778887655 56788899999999999987521 0122222222 1555565554321
Q ss_pred CCccC---HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCH
Q 010538 409 GSWFG---YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTF 485 (508)
Q Consensus 409 ~~~~~---~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ 485 (508)
...-+ ...+.+.+.++||.+.++.. ..+++|+++.+-.|.
T Consensus 363 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~~-------------------------------------~g~~lr~~ppl~i~~ 405 (421)
T PRK06777 363 TGKPSPEFTRQYQRQALEEGLLLLSCGV-------------------------------------HGNVIRFLYPLTIPD 405 (421)
T ss_pred cCCccHHHHHHHHHHHHhCCeEEeecCC-------------------------------------CCCEEEEeCCCCCCH
Confidence 10000 12355556789999977421 136899999888999
Q ss_pred HHHHHHHHhhhhhh
Q 010538 486 EDAKVNRCSSFDFV 499 (508)
Q Consensus 486 eev~~l~~~~~~~~ 499 (508)
++++++++++.+++
T Consensus 406 ~~i~~~~~~l~~~l 419 (421)
T PRK06777 406 AQFSKALNILTRLL 419 (421)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988775
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.3e-10 Score=121.17 Aligned_cols=354 Identities=11% Similarity=0.042 Sum_probs=199.8
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC-CCCceEEEcCC
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS-MKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~~~i~~t~g 111 (508)
++..|+|..+ .|--+|.+++++.++.. .. ....... .......++-+++++.+... .+ .+.|+++
T Consensus 54 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~-~~-~~~~~~~----~~~~~~~~la~~l~~~~p~~~~~--~v~f~~s 125 (443)
T PRK06058 54 DGNRLIDLGSGIAVTSVGNSAPRVVEAVREQVA-RF-THTCFMV----TPYEGYVAVAEQLNRLTPGDHEK--RSALFNS 125 (443)
T ss_pred CCCEEEEcCcchhhhccCCCCHHHHHHHHHHHH-hc-cCccccc----cCCHHHHHHHHHHHHhCCCCCCC--EEEEeCC
Confidence 7888999844 44558888888766542 21 1111100 01233445566677776533 24 7899999
Q ss_pred hHHHHHHHHhhc-CCCCCCeEEEecccccchH-HHHHHHH-----hcC-----CeEEEEccCCcc-Cccccccccccccc
Q 010538 112 ATAALKLVGEAF-PWSHQSSYMYTMENHNSVL-GIREYAL-----SQG-----AAAFAIDVEEAV-DNDGLSESLVTSTK 178 (508)
Q Consensus 112 ~t~al~~~~~~l-~~~~g~~vl~~~~~h~s~~-~~~~~~~-----~~G-----~~v~~v~~~~~~-~~~~l~~~~~~~~~ 178 (508)
+++|+..++... ...+.++||+....|.+.. ....... +.+ ..+..+|..... ..... .......
T Consensus 126 GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 203 (443)
T PRK06058 126 GAEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGL--ATDGEEA 203 (443)
T ss_pred cHHHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCccccccccc--ccchHHH
Confidence 999998877632 1234466776654444333 2222110 011 112222211000 00000 0000000
Q ss_pred cccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecccc-
Q 010538 179 ISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKG- 253 (508)
Q Consensus 179 ~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~- 253 (508)
.....+.++ +.+ ..+++..|++..++...|.+.| +++|.++|++ +|+++|.|+++.
T Consensus 204 ~~~~~~~l~--~~~-----~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~------------~gillI~DEV~tG 264 (443)
T PRK06058 204 AARAITVIE--KQV-----GADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRE------------NGVVFIADEVQTG 264 (443)
T ss_pred HHHHHHHHH--Hhh-----CCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHH------------cCCEEEEeccccC
Confidence 001123333 222 1356788888877777777776 5566666766 999999999986
Q ss_pred CCCCC--C--CCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCcccccc
Q 010538 254 CVTQP--P--DLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFE 327 (508)
Q Consensus 254 ~g~~~--~--d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (508)
+|... . +......|+++++ |.++ . | +|++++++++.+.+.+...+.
T Consensus 265 fgRtG~~fa~~~~gv~PDiv~~g--K~l~-~-G~Pi~av~~~~~i~~~~~~~~~~~------------------------ 316 (443)
T PRK06058 265 FARTGAWFACEHEGIVPDLITTA--KGIA-G-GLPLSAVTGRAEIMDAPHPGGLGG------------------------ 316 (443)
T ss_pred CCcChhhhHHHhcCCCCCEEEEc--cccc-C-CCccEEEEEcHHHHhhccCCCCCC------------------------
Confidence 32211 1 1112346898886 9776 3 4 899999998876554331110
Q ss_pred CCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCC
Q 010538 328 DGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRP 407 (508)
Q Consensus 328 ~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 407 (508)
....|..+.++..++++.+.+ +++.++..++.++|.+.|+++.. ...++..-.. .+.++.+.+...
T Consensus 317 T~~gnpl~~aaa~a~L~~~~~---~~l~~~~~~~g~~l~~~L~~l~~-----~~~~i~~vrg------~G~~~~i~~~~~ 382 (443)
T PRK06058 317 TYGGNPVACAAALAAIETIEE---DDLVARARQIEALMTDRLRALAA-----EDDRIGDVRG------RGAMIAIELVKP 382 (443)
T ss_pred CCCCCHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHHHHh-----hCCcEEeeec------cceEEEEEEecC
Confidence 112345556666777887655 35678888889999999877521 1112211111 266776766432
Q ss_pred CCCccC---HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCC
Q 010538 408 DGSWFG---YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMST 484 (508)
Q Consensus 408 ~~~~~~---~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t 484 (508)
....-+ ...+.+.+.++||.+.++.. ..+++|+.+.+-.|
T Consensus 383 ~~~~~~~~~~~~l~~~~~~~Gv~~~~~~~-------------------------------------~~~~lr~~Ppl~~t 425 (443)
T PRK06058 383 GTTEPDAELTKALAAAAHAAGVIVLTCGT-------------------------------------YGNVIRLLPPLVIG 425 (443)
T ss_pred CCCCCcHHHHHHHHHHHHHCCeEEeccCC-------------------------------------CCCEEEEECCCccC
Confidence 110001 13456666789999876310 14689999999999
Q ss_pred HHHHHHHHHhhhhhhh
Q 010538 485 FEDAKVNRCSSFDFVN 500 (508)
Q Consensus 485 ~eev~~l~~~~~~~~~ 500 (508)
++||+++++++.++++
T Consensus 426 ~~~i~~~~~~l~~~l~ 441 (443)
T PRK06058 426 DELLREGLDVLEAALA 441 (443)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988765
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.9e-11 Score=124.29 Aligned_cols=359 Identities=14% Similarity=0.125 Sum_probs=194.0
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCC-CCceEEEcCC
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASM-KDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~-~~~~i~~t~g 111 (508)
++.-|+|..+ .|--+|.+++++.+++. ... ....... ......++-+++++++.... + .+.|+++
T Consensus 52 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~-~~~-~~~~~~~----~~~~~~~la~~L~~~~p~~~~~--~v~f~~s 123 (451)
T PRK06918 52 DGNQYIDFAGAIGTINVGHSHPKVKEALHKQVD-QYI-HTGFNVM----MYEPYIELAEKLAALAPGSFDK--KVLFLNS 123 (451)
T ss_pred CCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHH-hcc-Ccccccc----ccHHHHHHHHHHHHhCCCCCCC--EEEEcCC
Confidence 7788999743 35568889888766543 211 1111000 12334455666777775432 4 7999999
Q ss_pred hHHHHHHHHhhcC-CCCCCeEEEeccc-ccchHHHHHHHHh-------cC---CeEEEEccCCccCc-cccccccccccc
Q 010538 112 ATAALKLVGEAFP-WSHQSSYMYTMEN-HNSVLGIREYALS-------QG---AAAFAIDVEEAVDN-DGLSESLVTSTK 178 (508)
Q Consensus 112 ~t~al~~~~~~l~-~~~g~~vl~~~~~-h~s~~~~~~~~~~-------~G---~~v~~v~~~~~~~~-~~l~~~~~~~~~ 178 (508)
+|+|+..++.... ..+...||..... |......+..... ++ ..+..+|....... ..+ . ...
T Consensus 124 GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~ 198 (451)
T PRK06918 124 GAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGL----T-EEQ 198 (451)
T ss_pred cHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccC----c-hHH
Confidence 9999988776442 2344566665443 3333333221100 00 11222332110000 000 0 000
Q ss_pred c-ccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHH-HHHHHcCCccccccCCCCCCCeEEEEecccc-CC
Q 010538 179 I-SLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDL-INIMKKNPERILEISPFSKGRWMVLIDAAKG-CV 255 (508)
Q Consensus 179 ~-~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~-i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~-~g 255 (508)
. ..-.+.++ +.+.. ....+++..|++.-++...|.+.|.++ +.++.+ +|+++|+++|+|+++. ++
T Consensus 199 ~~~~~~~~~~--~~~~~-~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~---------l~~~~gillI~DEV~tg~g 266 (451)
T PRK06918 199 YDDFMIEEFK--NFFIS-EVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRN---------ICSEHGILFVADEIQTGFA 266 (451)
T ss_pred HHHHHHHHHH--HHHHh-hcCCCceEEEEECcccCCCCCccCCHHHHHHHHH---------HHHHcCCEEEEeccccCcC
Confidence 0 00011222 11100 011346788888877777788777443 333333 4445999999999976 33
Q ss_pred CC--CCCCCCCC--CcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCC
Q 010538 256 TQ--PPDLSKYP--VDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDG 329 (508)
Q Consensus 256 ~~--~~d~~~~~--~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 329 (508)
.. +..+..++ .|++ +++|.++ + | +|++++++++.+.+.+...+. ..
T Consensus 267 r~g~~~a~~~~~v~pDi~--t~sK~l~-~-G~pig~v~~~~~i~~~~~~~~~~~------------------------T~ 318 (451)
T PRK06918 267 RTGKYFAIEHFDVVPDLI--TVSKSLG-A-GVPISGVIGRKEIMDESAPGELGG------------------------TY 318 (451)
T ss_pred ccCceehhHhcCCCCCEE--eeehhhc-C-CCccEEEEEcHHHHhccCCCCcCc------------------------CC
Confidence 22 22223333 6755 5679888 5 4 899999988876554321110 11
Q ss_pred CCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEee-CCC
Q 010538 330 TASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLK-RPD 408 (508)
Q Consensus 330 t~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~ 408 (508)
..+....++..++++++.+. .+.++.+++.+++.+.|+++.. ..+.+.-+.. .+.+..+.+. +.+
T Consensus 319 ~g~~l~~aaa~a~l~~i~~~---~~~~~~~~~g~~l~~~l~~l~~--~~~~~~~vrg---------~G~~~~~~~~~~~~ 384 (451)
T PRK06918 319 AGSPLGCAAALAVLDIIEKE---NLNDRAIELGKVVMNRFEEMKN--KYNCIGDVRG---------LGAMCAFELVQDRK 384 (451)
T ss_pred CcCHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHh--hCCCceeecc---------ceeEEEEEEccCCC
Confidence 23444555666677877553 4556777788888888876521 0011111111 1455555542 111
Q ss_pred ---CCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCH
Q 010538 409 ---GSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTF 485 (508)
Q Consensus 409 ---~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ 485 (508)
........+.+.+.++||.+.++.. ..+.+|+++..-.|.
T Consensus 385 ~~~~~~~~~~~l~~~~~~~Gvlv~~~~~-------------------------------------~~~~lrl~p~l~~t~ 427 (451)
T PRK06918 385 TKEPDKTLTANICKEANKRGLLLLSAGT-------------------------------------YGNVIRVLMPLVITD 427 (451)
T ss_pred cCCCcHHHHHHHHHHHHHCCeEEeecCC-------------------------------------CCCEEEEECCCccCH
Confidence 0101123466667889999977421 136899999887899
Q ss_pred HHHHHHHHhhhhhhhh
Q 010538 486 EDAKVNRCSSFDFVNF 501 (508)
Q Consensus 486 eev~~l~~~~~~~~~~ 501 (508)
++++.+++.|.+.++-
T Consensus 428 ~~id~~l~~l~~~l~~ 443 (451)
T PRK06918 428 EQLEEGLTIIEESLQA 443 (451)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988754
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-11 Score=129.60 Aligned_cols=275 Identities=14% Similarity=0.091 Sum_probs=185.2
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCcc
Q 010538 85 IVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAV 164 (508)
Q Consensus 85 ~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~ 164 (508)
...++.+.+|+.+|++.. ..+++|+|.|+..++.++ .++||.||+....|-|+...+-++ |+..+++....+.
T Consensus 71 ~i~eAqe~aA~~fgAd~t---yFvvNGTS~ank~vi~a~-~~~GD~VLvdRN~HKSi~~glila---Ga~Pvyl~p~~np 143 (557)
T COG1982 71 PIKEAQELAARVFGADHT---YFVVNGTSTANKAVINAV-LTPGDKVLVDRNCHKSIHHGLILA---GATPVYLEPSRNP 143 (557)
T ss_pred cHHHHHHHHHHHhCCCce---EEEECCccHHHHHHHHhh-cCCCCEEEecCCccHHHHHHHHHc---CCceEEecCCCCc
Confidence 467889999999999876 677899999999999998 799999999999999988775544 8888877544321
Q ss_pred ---CccccccccccccccccchhhhhcCCCCCCCCCCCCCc-eEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCC
Q 010538 165 ---DNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAY-NLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFS 240 (508)
Q Consensus 165 ---~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t-~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~ 240 (508)
-+-.+ +.+.++ +++.++ +.. ++++++. .+..|+++++++|.+.++.
T Consensus 144 ~~gi~ggI------------~~~~~~--~~l~~~----~~~~k~~vitn-pTYdGv~~n~~~i~~~~~~----------- 193 (557)
T COG1982 144 LYGIIGGI------------PLETFK--EALLAH----PDAEKLAVITN-PTYDGVCYNLRKIVELLHH----------- 193 (557)
T ss_pred cccccCCC------------CHHHHH--HHHHhC----hhhheeEEEec-CccceEeecHHHHHHHHhh-----------
Confidence 11111 567776 444321 233 6777776 4678999999999999997
Q ss_pred CCCeEEEEeccccC-----CCCCCCCCCCCCcEEEEeccccccCCCcceEEEEech-hH--hhhccccccCceEEecccc
Q 010538 241 KGRWMVLIDAAKGC-----VTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRND-AA--KLLKNTYFSGGTVAASIAD 312 (508)
Q Consensus 241 ~~g~~vivD~a~~~-----g~~~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~-~~--~~l~~~~~g~~~~~~~~~~ 312 (508)
.++|+.+|.+|.+ +..|....+.+.|+++-|.||.+++-.-...+.+++. .+ +++...
T Consensus 194 -~~a~v~~deah~~~~~~~~~l~~~~~~~~~~~~tqS~HK~l~alSQaS~iHv~~~~~~~~~r~nea------------- 259 (557)
T COG1982 194 -YGAWVLYDEAHPAHFDFSPMLPESALNGGADFVTQSTHKLLAALSQASMIHVKDGRAVNHERFNEA------------- 259 (557)
T ss_pred -cCceEEhhhcCcccccccccCcchhhhcCceEEEechhhhhhhhhhhHHHhhCCCccCCHHHHHHH-------------
Confidence 8999999999875 2222222235789999999998885544677777652 11 111111
Q ss_pred hhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHH---HHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCC
Q 010538 313 IDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAI---CRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTS 389 (508)
Q Consensus 313 ~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i---~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~ 389 (508)
-..+.+.+|+++.++++..|-.+....|.... .....+.++.+++...++. ++.++.+...
T Consensus 260 ----------~~~h~STSPsY~l~ASlD~Ar~~~~~~G~~l~~~~~~~~i~~r~~~~~~~~~~~------~~~~~~~~~~ 323 (557)
T COG1982 260 ----------LMMHQSTSPSYPLMASLDVARMQEGNAGRELWQEVIDEAIDFRKALRRLINEIG------FFPVLQPEKL 323 (557)
T ss_pred ----------HHHHccCCchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC------Ceeecccccc
Confidence 22344567888888888886555555554332 5677788888888887773 6777776531
Q ss_pred CcccC------C-------CCceEEEEeeCCCCCccCHHHHHHHHhhCCCeec
Q 010538 390 EVSYH------D-------TGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLR 429 (508)
Q Consensus 390 ~~~~~------~-------~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~ 429 (508)
-.+.. - -+.=+++..+ ...+....+.+.|+++||...
T Consensus 324 ~~~~~whgf~~~~~~~~~lDP~Klti~tp---~~Gipg~~v~~~L~e~gii~e 373 (557)
T COG1982 324 DPPTGWHGFEDYADDQYFLDPTKLTITTP---EFGIPGAIVAKYLREHGIIPE 373 (557)
T ss_pred CCcccccccccccccceeccccEEEEecC---CCCCcHHHHHHHHHHcCCeee
Confidence 00000 0 0111223322 223555679999999999864
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.4e-11 Score=124.24 Aligned_cols=364 Identities=9% Similarity=0.026 Sum_probs=199.7
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+ .+.-+|.+++++.++.. .....+. .+ ......++.+.++++++.. . .+.|++++
T Consensus 45 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~-~~~~~~~-~~-----~~~~~~~lae~l~~~~~~~-~--~v~f~~sG 114 (451)
T PRK07678 45 QGNRYLDGMSGLWCVNVGYGRKELAEAAYEQLK-TLSYFPL-TQ-----SHEPAIKLAEKLNEWLGGE-Y--VIFFSNSG 114 (451)
T ss_pred CCCEEEEccccHHhhcCCCCCHHHHHHHHHHHH-hcCcccc-cc-----CCHHHHHHHHHHHHhCCCC-C--EEEEeCCc
Confidence 7889999743 35558889888766543 2211111 11 1122345566677777543 4 79999999
Q ss_pred HHHHHHHHhhcC-C-----C-CCCeEEEecccccc-hHHHHHHHHh------c---CCeEEEEccCCccCcccccccccc
Q 010538 113 TAALKLVGEAFP-W-----S-HQSSYMYTMENHNS-VLGIREYALS------Q---GAAAFAIDVEEAVDNDGLSESLVT 175 (508)
Q Consensus 113 t~al~~~~~~l~-~-----~-~g~~vl~~~~~h~s-~~~~~~~~~~------~---G~~v~~v~~~~~~~~~~l~~~~~~ 175 (508)
++|+..++.... . + +..+||.....|-. .......... + ...+..+|........ .. ..
T Consensus 115 seA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~ 190 (451)
T PRK07678 115 SEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMP-GI---ES 190 (451)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCcccccc-cc---CC
Confidence 999988766532 1 1 23566665543332 3222221100 0 0112223321110000 00 00
Q ss_pred cccc-ccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEec
Q 010538 176 STKI-SLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDA 250 (508)
Q Consensus 176 ~~~~-~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~ 250 (508)
.... ...++.++ +.+.+ ...+++..|++.-+....|.+.| ++++.++|++ +|+++|+|+
T Consensus 191 ~~~~~~~~~~~l~--~~~~~--~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~------------~g~llI~DE 254 (451)
T PRK07678 191 EDIYDLECVKEID--RVMTW--ELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQK------------HGALLISDE 254 (451)
T ss_pred hHHHHHHHHHHHH--HHHHh--cCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHH------------cCCEEEEee
Confidence 0000 00122233 33321 12357889999888888898887 4456666665 999999999
Q ss_pred ccc-CCCCC----CCCCCCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccc
Q 010538 251 AKG-CVTQP----PDLSKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEE 324 (508)
Q Consensus 251 a~~-~g~~~----~d~~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 324 (508)
++. +|..- .+.-....|+++++ |.+|+- .-+|.+.+++++.+.+.+....+ .
T Consensus 255 V~tGfGRtG~~~~~~~~gv~PDivt~g--K~lggG~~Pi~av~~~~~i~~~~~~~~~~~--------------------~ 312 (451)
T PRK07678 255 VICGFGRTGKAFGFMNYGVKPDIITMA--KGITSAYLPLSATAVKKEIYEAFKGKGEYE--------------------H 312 (451)
T ss_pred hhhcCCcCchhHHHHhcCCCCCEEEee--cccccCCcceeEEEEcHHHHHHHhccCccc--------------------c
Confidence 984 44321 11112247999886 976631 01799999999876554321000 0
Q ss_pred cccCCC--CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEE
Q 010538 325 LFEDGT--ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSF 402 (508)
Q Consensus 325 ~~~~gt--~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 402 (508)
-...+| -|...+++..++++.+.+. .+.++..++.++|.+.|+++.. ...++.... -++.++.+
T Consensus 313 ~~h~~T~~gnp~~~aaa~a~l~~l~~~---~~~~~~~~~g~~l~~~l~~~~~-----~~~~v~~vr------g~Gl~~~i 378 (451)
T PRK07678 313 FRHVNTFGGNPAACALALKNLEIMENE---NLIERSAQLGELLLEQLKEELG-----EHPLVGDIR------GKGLLVGI 378 (451)
T ss_pred cccCCCCCcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHh-----cCCCEEEEE------eeceEEEE
Confidence 001122 3455666667788877653 5677888888888888864311 111111111 12667777
Q ss_pred EeeCCCCC-c-cC---HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEE
Q 010538 403 NLKRPDGS-W-FG---YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRV 477 (508)
Q Consensus 403 ~~~~~~~~-~-~~---~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRi 477 (508)
.+...... . .+ ...+.+.+.++||.+.+.. ...+. ..+.+|+
T Consensus 379 ~~~~~~~~~~~~~~~~a~~i~~~l~~~Gv~~~~~g-~~v~~--------------------------------~~~~lrl 425 (451)
T PRK07678 379 ELVNDKETKEPADNDKVASVVAACKEKGLIIGKNG-DTVAG--------------------------------YNNVLTL 425 (451)
T ss_pred EEecCCcccCcCchHHHHHHHHHHHHCCcEEeecC-ccccC--------------------------------CCCEEEE
Confidence 76421110 0 01 2356777888999986421 00000 1367999
Q ss_pred ecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 478 SFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 478 s~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
++.+-+|++||+++++++.+.++-
T Consensus 426 ~Ppl~it~~eid~~~~~l~~~l~~ 449 (451)
T PRK07678 426 SPPLVISSEEIAFIVGTLKTALER 449 (451)
T ss_pred ECCCcCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999887753
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.1e-10 Score=121.29 Aligned_cols=357 Identities=13% Similarity=0.062 Sum_probs=199.1
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC-CCCceEEEcCC
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS-MKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~~~i~~t~g 111 (508)
++.-|+|..+. |--+|.+++++.+++. ... ....... ......++.+++++.+... .+ .+.|+++
T Consensus 52 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~-~~~-~~~~~~~----~~~~~~~lAe~L~~~~p~~~~~--~v~f~~S 123 (441)
T PRK05769 52 DGNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAE-KFL-HYSLTDF----YYEPAVELAERLVEIAPGGFEK--KVFFTNS 123 (441)
T ss_pred CCCEEEECCCchhhcccCCCCHHHHHHHHHHHH-hcc-CccCccc----CCHHHHHHHHHHHHhCCCCCCC--EEEECCc
Confidence 67889997443 3446888888766543 211 1111000 1223445666677776432 34 7999999
Q ss_pred hHHHHHHHHhhcC-CCCCCeEEEecccc-cchHHHHHHHHh-------cC---CeEEEEccCCccCcccccccccccccc
Q 010538 112 ATAALKLVGEAFP-WSHQSSYMYTMENH-NSVLGIREYALS-------QG---AAAFAIDVEEAVDNDGLSESLVTSTKI 179 (508)
Q Consensus 112 ~t~al~~~~~~l~-~~~g~~vl~~~~~h-~s~~~~~~~~~~-------~G---~~v~~v~~~~~~~~~~l~~~~~~~~~~ 179 (508)
+|+|+..++.... ..+..+|+.....| ......+..... ++ ..+..+|........ +. ........
T Consensus 124 GsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~ 201 (441)
T PRK05769 124 GTESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNP-WG-IENPEECG 201 (441)
T ss_pred hHHHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCcccccc-cc-CCchHHHH
Confidence 9999988776432 23445677665433 333333221100 00 112233321100000 00 00000000
Q ss_pred ccchhhhhcCC-CCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecccc-
Q 010538 180 SLLPIQRRKGA-SFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKG- 253 (508)
Q Consensus 180 ~~d~~~l~~~~-~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~- 253 (508)
....+.++ + .+++ ....+++..|++..+....|.+.| ++++.++|++ +|+++|+|++++
T Consensus 202 ~~~~~~le--~~~~~~-~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~------------~g~lli~DEv~tG 266 (441)
T PRK05769 202 NAVLDFIE--DYLFKK-LVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADK------------YGILLIDDEVQTG 266 (441)
T ss_pred HHHHHHHH--HHHHhh-ccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHH------------cCCEEEEechhhC
Confidence 00123344 3 1111 011356899999999999999999 8888888887 999999999987
Q ss_pred CCCCC--CCCCC--CCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCC
Q 010538 254 CVTQP--PDLSK--YPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDG 329 (508)
Q Consensus 254 ~g~~~--~d~~~--~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 329 (508)
+|... +.... ...|++++| |.+++-..+|+++++++.... .+...+. ..
T Consensus 267 ~gr~G~~~a~~~~gv~pDivt~~--K~l~~G~p~gav~~~~~i~~~-~~~~~~~----------------------T~-- 319 (441)
T PRK05769 267 MGRTGKMFAIEHFGVEPDIITLA--KAIAGGLPLGAVIGRAELMFL-PPGSHAN----------------------TF-- 319 (441)
T ss_pred CCcccceehhhccCCCCCEEEEc--ccccCCcccEEEEEehhhhhc-CCCCCCC----------------------CC--
Confidence 33221 11112 235888754 966632237888888887532 1111000 01
Q ss_pred CCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCC
Q 010538 330 TASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDG 409 (508)
Q Consensus 330 t~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 409 (508)
+.+...+++..++++.+.+ ++.++..++.++|++.|+++.. ...++.... -.+.++.+.+.+...
T Consensus 320 ~g~p~~~aaa~a~L~~l~~----~~~~~~~~~g~~l~~~L~~l~~-----~~~~~~~vr------g~G~~~~i~~~~~~~ 384 (441)
T PRK05769 320 GGNPVAAAAALATLEELEE----GLLENAQKLGEYLRKELKELKE-----KYEFIGDVR------GLGLMIGVELVKDRK 384 (441)
T ss_pred CcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH-----hCCCeeeee------cceEEEEEEeccCCc
Confidence 1244556666677887654 6678888899999998876520 111222111 126677777643211
Q ss_pred C--ccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHH
Q 010538 410 S--WFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFED 487 (508)
Q Consensus 410 ~--~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ee 487 (508)
. .-....+.+.+.++||.+.+. ....+|+++.+..|++|
T Consensus 385 ~~~~~~~~~~~~~~~~~Gil~~~~---------------------------------------~~~~lr~~p~l~~t~~~ 425 (441)
T PRK05769 385 EPDPKLRDKVLYEAFKRGLLLLGA---------------------------------------GKSAIRIIPPLIITEEE 425 (441)
T ss_pred cccHHHHHHHHHHHHhCCcEEecC---------------------------------------CCCEEEEeCCCCCCHHH
Confidence 0 001134667777899998541 13679999999999999
Q ss_pred HHHHHHhhhhhhhh
Q 010538 488 AKVNRCSSFDFVNF 501 (508)
Q Consensus 488 v~~l~~~~~~~~~~ 501 (508)
|+++++++.+.++.
T Consensus 426 id~~~~~l~~~l~~ 439 (441)
T PRK05769 426 ADIGLEILEEAIKE 439 (441)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887753
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=1e-10 Score=123.00 Aligned_cols=351 Identities=10% Similarity=0.039 Sum_probs=199.1
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..+. +--+|.+++++.++. ..........+ ......++.+++++++....+ .+.|++++
T Consensus 41 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~-~~~~~~~~~~~-----~~~~~~~la~~L~~~~p~~~~--~v~f~~SG 112 (428)
T PRK07986 41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQI-DAMSHVMFGGI-----THPPAIELCRKLVAMTPQPLE--CVFLADSG 112 (428)
T ss_pred CCCEEEEcchhHHhhcCCCCCHHHHHHHHHHH-hhcCCcccccc-----CCHHHHHHHHHHHhhCCCCcC--EEEEeCCc
Confidence 78889997542 455788888876644 32211111000 122344556667777654445 79999999
Q ss_pred HHHHHHHHhhcC-C-----CCCCeEEEecccc-cchHHHHHHHH-------hcC---CeEEEEccCCccCcccccccccc
Q 010538 113 TAALKLVGEAFP-W-----SHQSSYMYTMENH-NSVLGIREYAL-------SQG---AAAFAIDVEEAVDNDGLSESLVT 175 (508)
Q Consensus 113 t~al~~~~~~l~-~-----~~g~~vl~~~~~h-~s~~~~~~~~~-------~~G---~~v~~v~~~~~~~~~~l~~~~~~ 175 (508)
++|+..++.... . .+..+||.....| ........... .++ ..+..+|.......++.
T Consensus 113 sEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~------ 186 (428)
T PRK07986 113 SVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEW------ 186 (428)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhh------
Confidence 999988766432 1 2345676665443 32222221100 000 01112221100000000
Q ss_pred ccccccchhhhhcCCCCCCCCCCCCCceEEEEeCC-CCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEec
Q 010538 176 STKISLLPIQRRKGASFPERDPAGDAYNLFAFPSE-CNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDA 250 (508)
Q Consensus 176 ~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~-~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~ 250 (508)
-.-|+++++ +.+++ ..+++..|++..+ +...|.+.| +++|.++|++ +|+++|+|+
T Consensus 187 ---~~~d~~~l~--~~l~~---~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~------------~g~lLI~DE 246 (428)
T PRK07986 187 ---DERDIAPFA--RLMAA---HRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDR------------EGILLIADE 246 (428)
T ss_pred ---HHHHHHHHH--HHHHh---CCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHH------------cCCEEEEec
Confidence 001345555 44432 1346677887764 555566544 4566666666 999999999
Q ss_pred ccc-CCCCC----CCCCCCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccc
Q 010538 251 AKG-CVTQP----PDLSKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEE 324 (508)
Q Consensus 251 a~~-~g~~~----~d~~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 324 (508)
+|. +|..- .+......|++++ .|.+++- .-+|.+++++++.+.+.+...+. + ..
T Consensus 247 v~tG~GrtG~~fa~~~~gv~PDi~t~--gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~-----------~-------~~ 306 (428)
T PRK07986 247 IATGFGRTGKLFACEHAGIAPDILCL--GKALTGGTMTLSATLTTREVAETISNGEAGC-----------F-------MH 306 (428)
T ss_pred cccCCccCCCeeeecccCCCCCEEEe--chhhhCCcccCcchhchHHHHHHhhcCCCCc-----------c-------cc
Confidence 984 22211 1222234688864 5966521 12677788888876654311000 0 00
Q ss_pred cccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEe
Q 010538 325 LFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNL 404 (508)
Q Consensus 325 ~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 404 (508)
. ...+.|....++..++++.+.+. .+.++..++.++|.+.|+++.. .+.+ ++-. -++.++.+.+
T Consensus 307 ~-~T~~g~p~~~aaa~a~L~~i~~~---~~~~~~~~~g~~l~~~l~~l~~---~~~i---~~vR------g~Gl~~~ve~ 370 (428)
T PRK07986 307 G-PTFMGNPLACAVANASLSLLESG---DWQQQVAAIEAQLREELAPLRD---APMV---ADVR------VLGAIGVVET 370 (428)
T ss_pred C-CCCCcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHhc---CCCE---EeEe------ccceEEEEEe
Confidence 0 01123456677777788887664 4578888999999998887520 1222 2111 1267777777
Q ss_pred eCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCC
Q 010538 405 KRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMST 484 (508)
Q Consensus 405 ~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t 484 (508)
.... ....+.+.+.++|+.+++. .+.+|+.+.+-.|
T Consensus 371 ~~~~----~~~~~~~~l~~~Gl~~~~~----------------------------------------g~~i~~~Ppl~it 406 (428)
T PRK07986 371 TRPV----NMAALQRFFVEQGVWIRPF----------------------------------------GKLIYLMPPYIIL 406 (428)
T ss_pred CCcc----cHHHHHHHHHHCCcEEEec----------------------------------------CCEEEEeCCCCCC
Confidence 5431 2235788888999998651 3579999999999
Q ss_pred HHHHHHHHHhhhhhhhhhh
Q 010538 485 FEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 485 ~eev~~l~~~~~~~~~~~~ 503 (508)
++|++++++.+.+.++---
T Consensus 407 ~~ei~~~~~~l~~~l~~~~ 425 (428)
T PRK07986 407 PEQLQRLTAAVNRAVQDET 425 (428)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 9999999999998775433
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-10 Score=116.39 Aligned_cols=323 Identities=11% Similarity=0.043 Sum_probs=210.6
Q ss_pred hhhhHHHHHHHHHHHHHcCCCCCCceEEEcC--ChHHHH--HHHHhhcCC----CCCCeEEEecccccchHHHHHHHHhc
Q 010538 80 LATCDIVRAAREQVLDYFNASMKDYKCIFTS--GATAAL--KLVGEAFPW----SHQSSYMYTMENHNSVLGIREYALSQ 151 (508)
Q Consensus 80 ~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~--g~t~al--~~~~~~l~~----~~g~~vl~~~~~h~s~~~~~~~~~~~ 151 (508)
....+++.++.+++.++.|.+. |.+.+ |+..=+ .++++++.. ...+++|+++..|.+.-+.+.++
T Consensus 105 qG~l~li~~Lq~~L~~ITG~Da----vsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAam~--- 177 (496)
T COG1003 105 QGYLELIYELQEWLKEITGMDA----VSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAAMA--- 177 (496)
T ss_pred HHHHHHHHHHHHHHHHhcCCce----eeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHhhc---
Confidence 4467788899999999999874 45543 333211 234444422 24578999999998887776665
Q ss_pred CCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccc-cCHHHHHHHHcCC
Q 010538 152 GAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSR-FNLDLINIMKKNP 230 (508)
Q Consensus 152 G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~-~~i~~i~~l~~~~ 230 (508)
|.+|+.|+.++++.+ |+++|+ +.+ .+++..+.++.+++- |.. -++.+|++++|+
T Consensus 178 G~~VV~V~~~~~G~V---------------DlddLk--~k~------~~~~AalMiTnPsT~-GvFE~~I~ei~~ivH~- 232 (496)
T COG1003 178 GFKVVVVKCDENGNV---------------DLDDLR--AKA------EDNLAALMITNPSTL-GVFEEDIREICEIVHE- 232 (496)
T ss_pred CceEEEEecCCCCCc---------------cHHHHH--HHh------ccceeEEEeccCccc-ccchhhHHHHHHHHHH-
Confidence 999999999999988 689998 443 578999999998664 554 569999999998
Q ss_pred ccccccCCCCCCCeEEEEecccc---CCCCCCCCCCCCCcEEEEeccccccCCCc-----ceEEEEechhHhhhcccccc
Q 010538 231 ERILEISPFSKGRWMVLIDAAKG---CVTQPPDLSKYPVDFVVMSFYKIFGYPTG-----LGALIMRNDAAKLLKNTYFS 302 (508)
Q Consensus 231 ~~~~~~~~~~~~g~~vivD~a~~---~g~~~~d~~~~~~D~~~~S~~K~~g~P~G-----~G~l~~~~~~~~~l~~~~~g 302 (508)
+|..|..|||.. +|. ....++|.|++-..+||+|+.|.| .|=+.++..+ .|...+
T Consensus 233 -----------~Gg~vY~DGANlNA~vG~--~rPGd~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L----~pfLP~ 295 (496)
T COG1003 233 -----------AGGQVYYDGANLNAIVGL--ARPGDMGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHL----APFLPG 295 (496)
T ss_pred -----------cCCEEEecCcchhhhhcc--ccccccccceEEeecccccccCCCCCCCCCCceehHhhc----cccCCC
Confidence 999999999854 232 223456799999999999886654 6777777554 343333
Q ss_pred Cc----eEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 010538 303 GG----TVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGA 378 (508)
Q Consensus 303 ~~----~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~ 378 (508)
.. ...+.. ++..........-..|+ ++-+.-.++-+..+...|+++..+...-.++|+...|+..
T Consensus 296 p~~~~~~~~y~~---~~~~~~s~g~~~a~~Gs--~~il~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~~------ 364 (496)
T COG1003 296 PVVYHDVGEYRL---DYDGKKSIGVSAAPYGS--ASILPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKGY------ 364 (496)
T ss_pred CcccCCCccccc---cCCCCccceeeccccCc--chHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhhc------
Confidence 10 000000 00000000000011122 2222223344566667788999999999999999999864
Q ss_pred ceEEE-ecCCCCCcccCCCCceEEEEeeC-CCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhc
Q 010538 379 DVCTI-YGTYTSEVSYHDTGSMVSFNLKR-PDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEA 456 (508)
Q Consensus 379 ~~~~~-~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~ 456 (508)
+.+ +.+... ..+-+.+.... .+...+...++.++|.+.|+..-+-++.
T Consensus 365 --y~~~y~~~~~------~~HE~ild~r~l~~~~Gv~~~DvAKrLlD~GfHaPT~~FP---------------------- 414 (496)
T COG1003 365 --YPVPYTGENR------VAHECILDARPLKKETGVRALDVAKRLLDYGFHAPTMYFP---------------------- 414 (496)
T ss_pred --CccccCCCCc------ceeEEEeechHhHhhcCCcHHHHHHHHHhcCCCCCcccCc----------------------
Confidence 444 333211 13333333331 1222366778999999999986553321
Q ss_pred CCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhhh
Q 010538 457 GHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQF 504 (508)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~~ 504 (508)
-...+.+=|=+.---+.+++|+++++|..+.+..+.
T Consensus 415 ------------liV~~tLMIEPTEsEsk~eLDrf~dami~I~~Ea~~ 450 (496)
T COG1003 415 ------------LIVAGTLMIEPTESESKEELDRFIDAMIAIREEADA 450 (496)
T ss_pred ------------cccccceeecCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 112577888888888999999999999999877653
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=3e-10 Score=120.71 Aligned_cols=363 Identities=13% Similarity=0.058 Sum_probs=203.9
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..+. +--+|.+++++.++...-.+....+.+ ......++.+++++++..+.+ .+.|++++
T Consensus 46 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~-----~~~~~~~lae~L~~~~p~~~~--~v~f~~SG 118 (460)
T PRK06105 46 AGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLPFYHTFSHK-----SHGPVIDLAEKLVAMAPVPMS--KVFFTNSG 118 (460)
T ss_pred CCCEEEEcchhHHhccCCCCCHHHHHHHHHHHHhCCCeeccccc-----CCHHHHHHHHHHHHhCCCCCC--EEEEeCCc
Confidence 78899997543 345888888876654321000111111 123344566777777755445 79999999
Q ss_pred HHHHHHHHhhcC------C-CCCCeEEEec-ccccchHHHHHHHH------hcC---CeEEEEccCCccCcccccccccc
Q 010538 113 TAALKLVGEAFP------W-SHQSSYMYTM-ENHNSVLGIREYAL------SQG---AAAFAIDVEEAVDNDGLSESLVT 175 (508)
Q Consensus 113 t~al~~~~~~l~------~-~~g~~vl~~~-~~h~s~~~~~~~~~------~~G---~~v~~v~~~~~~~~~~l~~~~~~ 175 (508)
++|+..++.... - ....+||... .-|........... ..| ..+..+|...........+ ..
T Consensus 119 seAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--~~ 196 (460)
T PRK06105 119 SEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGE--SE 196 (460)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccccccCCC--Ch
Confidence 999988877631 0 1234566554 33443333221110 011 1122222211000000000 00
Q ss_pred ccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecc
Q 010538 176 STKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAA 251 (508)
Q Consensus 176 ~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a 251 (508)
........++++ +.+.+ ...+++..|++..+....|.+.| ++.+.++|++ +|+++|+|++
T Consensus 197 ~~~~~~~~~~le--~~~~~--~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~------------~~~llI~DEv 260 (460)
T PRK06105 197 EAFATRLANELE--ALILA--EGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRK------------YDILLVADEV 260 (460)
T ss_pred HHHHHHHHHHHH--HHHHH--cCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHH------------cCCeEEEecc
Confidence 000000123444 33321 11246788999888888899888 6677777776 9999999999
Q ss_pred cc-CCCCC----CCCCCCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCcccc
Q 010538 252 KG-CVTQP----PDLSKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEEL 325 (508)
Q Consensus 252 ~~-~g~~~----~d~~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 325 (508)
|. +|..- .+......|++++| |.+++- ..+|.+++++++.+.+.+.....+ ..
T Consensus 261 ~tG~GRtG~~f~~~~~~v~PDi~~~g--K~lggG~~P~~av~~~~~i~~~~~~~~~~~~-------------------~~ 319 (460)
T PRK06105 261 ICGFGRTGNMFGCETFGIKPDILVMS--KQLSSSYQPLSAVLMNEKVYDPIADESGKIG-------------------TF 319 (460)
T ss_pred ccCCCcCchhhhHHhcCCCCCeeeee--cccccCcccceEEEEcHHHHHHHhcccccCc-------------------cc
Confidence 84 54321 12222347888776 976621 017889999888665543200000 00
Q ss_pred ccCCC--CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEE
Q 010538 326 FEDGT--ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFN 403 (508)
Q Consensus 326 ~~~gt--~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 403 (508)
...+| -|....++..++++.+.+ +++.++..++.++|.+.|+++. ...++..-. -.+.++.+.
T Consensus 320 ~h~~T~~gnpl~~aaa~a~L~~i~~---~~l~~~v~~~g~~l~~~L~~l~------~~~~v~~vr------G~Gl~~gie 384 (460)
T PRK06105 320 GHGFTASGHPVAAAVALENLAIIEE---RDLVGNAAERGARLQARLRALA------DHPLVGEVR------GVGLIAAVE 384 (460)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHhh------cCCCeEEEE------ecceEEEEE
Confidence 01122 344556666668888776 3667888999999999988762 111121111 126677777
Q ss_pred eeCCCC--CccC-----HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEE
Q 010538 404 LKRPDG--SWFG-----YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIR 476 (508)
Q Consensus 404 ~~~~~~--~~~~-----~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iR 476 (508)
+..... ..++ ...+...+.++|+.+.+. .+.+|
T Consensus 385 ~~~~~~~~~~~~~~~~~a~~i~~~~~~~Gvl~~~~----------------------------------------g~~i~ 424 (460)
T PRK06105 385 LVADKATKTPFEPPGKVGARANAAAHEHGVISRAM----------------------------------------GDTLA 424 (460)
T ss_pred EecCcccCCCCCchhHHHHHHHHHHHHCCeEEEec----------------------------------------CCEEE
Confidence 643211 0011 134667778899998651 35799
Q ss_pred EecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 477 VSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 477 is~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
+++.+-.|++|++++++.+.+.++.+
T Consensus 425 l~Ppl~it~~eid~~~~~l~~~l~~~ 450 (460)
T PRK06105 425 FCPPLIITAAQVDEMVDRFGRALDDV 450 (460)
T ss_pred EECCCccCHHHHHHHHHHHHHHHHHH
Confidence 99999899999999999998877544
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-10 Score=122.90 Aligned_cols=343 Identities=13% Similarity=0.028 Sum_probs=196.0
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+. |..+|.+++++.+... ... .. +. .......+.+++++++. ..+ .+.|++|+
T Consensus 48 dG~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~-~~~---~~-~~----~~~~~~~la~~L~~~~~-~~~--~v~~~~sG 115 (426)
T PRK00062 48 DGNEYIDYVGSWGPMILGHAHPEVVEAVIEAAE-KGL---SF-GA----PTELEVELAELVIELVP-SIE--MVRMVNSG 115 (426)
T ss_pred CCCEEEEcccchhhhhcCCCCHHHHHHHHHHHH-hCC---cC-CC----CCHHHHHHHHHHHHhCC-CCC--EEEEecCH
Confidence 56778887542 3568888888766543 211 11 11 12334567777777763 245 79999999
Q ss_pred HHHHHHHHhhcC-CCCCCeEEEecccccchHHHHHHHHh-----cC-----CeEEEEccCCccCcccccccccccccccc
Q 010538 113 TAALKLVGEAFP-WSHQSSYMYTMENHNSVLGIREYALS-----QG-----AAAFAIDVEEAVDNDGLSESLVTSTKISL 181 (508)
Q Consensus 113 t~al~~~~~~l~-~~~g~~vl~~~~~h~s~~~~~~~~~~-----~G-----~~v~~v~~~~~~~~~~l~~~~~~~~~~~~ 181 (508)
++|+..++.... ..+++.||+....|.+...+...... .+ .....++.+ ..... -.
T Consensus 116 seA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------------~~ 182 (426)
T PRK00062 116 TEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKH-TLTAP------------YN 182 (426)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccc-eEEcC------------CC
Confidence 999998887642 23456777766555444322111100 00 000000000 00000 01
Q ss_pred chhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC
Q 010538 182 LPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ 257 (508)
Q Consensus 182 d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~ 257 (508)
|++.++ +.+.+ ..+++..|++..+...+|.+.| +++|.++|++ +|+++|+|++|.....
T Consensus 183 d~~~l~--~~i~~---~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~------------~~~llI~DEv~~G~r~ 245 (426)
T PRK00062 183 DLEAVE--ELFEE---YGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDE------------HGALLIFDEVMTGFRV 245 (426)
T ss_pred CHHHHH--HHHHh---CCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHH------------cCCEEEEeechhcccc
Confidence 456666 44432 1356789999988888999998 7778887876 9999999999873111
Q ss_pred -C---CCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCCh
Q 010538 258 -P---PDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASF 333 (508)
Q Consensus 258 -~---~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~ 333 (508)
. .+......|++ +++|.+++-..+|++++++++.+.+.+. +. ...+...+.+.
T Consensus 246 g~~~~~~~~~~~pDi~--~~gK~l~~G~p~ga~~~~~~i~~~~~~~--~~-------------------~~~~~T~~~~p 302 (426)
T PRK00062 246 ALGGAQGYYGVTPDLT--TLGKIIGGGLPVGAFGGRREIMEQLAPL--GP-------------------VYQAGTLSGNP 302 (426)
T ss_pred CCccHHHHhCCCcchH--hhhhHhhCCCcceeeeEHHHHHHhhccC--CC-------------------ceecccCcCCH
Confidence 0 01111135654 5669777211178888888887766421 00 00011112455
Q ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCc--
Q 010538 334 LSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSW-- 411 (508)
Q Consensus 334 ~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-- 411 (508)
...++..++++.+.+. ++.++.+++.+++++.|+++... . ++..-.. + .+.++.+.+.......
T Consensus 303 ~~~aaa~a~L~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~--~-~~~~~vr-g-------~G~~~~i~l~~~~~~~~~ 368 (426)
T PRK00062 303 LAMAAGLATLKLLKEP---GFYEELEALTKRLAEGLKEAAKK--A-GIPLTVN-R-------VGSMFGLFFTDEPVTNYA 368 (426)
T ss_pred HHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHH--c-CCceEEE-E-------ecceEEEEEecCCCcchh
Confidence 5666777788877553 56777778888887777643100 0 1111101 1 1677777765321110
Q ss_pred ----cC---HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCC
Q 010538 412 ----FG---YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMST 484 (508)
Q Consensus 412 ----~~---~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t 484 (508)
.+ ...+...|.++||.+.+.. .+.+|++ ..+|
T Consensus 369 ~~~~~~~~~~~~i~~~l~~~Gv~v~~~~---------------------------------------~~~~~~~--~~~t 407 (426)
T PRK00062 369 DAKKSDTERFARFFHAMLDEGVYLAPSQ---------------------------------------FEAGFVS--AAHT 407 (426)
T ss_pred hhccccHHHHHHHHHHHHHCCeEeecCC---------------------------------------cCceeee--ccCC
Confidence 01 1357788889999986521 2346665 5679
Q ss_pred HHHHHHHHHhhhhhhhh
Q 010538 485 FEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 485 ~eev~~l~~~~~~~~~~ 501 (508)
++|++++++.+.+.++.
T Consensus 408 ~~ei~~~~~~l~~~l~~ 424 (426)
T PRK00062 408 DEDIEKTLEAARKAFAA 424 (426)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999887754
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.5e-10 Score=121.30 Aligned_cols=366 Identities=12% Similarity=0.040 Sum_probs=201.6
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..+. +--+|.+++++.++...-.+..+...+ ..+...++-+++++++....+ .+.|++++
T Consensus 48 dG~~ylD~~sg~~~~~lGh~~p~v~~Av~~q~~~~~~~~~~~~~-----~~~~~~~lAe~L~~~~p~~~~--~v~f~~sG 120 (461)
T PRK07482 48 QGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKELAYYHTYVGH-----GTEASITLSKRIIDRAPAGMS--KVYYGLSG 120 (461)
T ss_pred CCCEEEEcccchhhhcCCCCCHHHHHHHHHHHHhcCcccccccc-----CCHHHHHHHHHHHHhCCCCcC--EEEEeCch
Confidence 78899998654 455888888876654321111111011 123345556667777654445 79999999
Q ss_pred HHHHHHHHhhcC------C-CCCCeEEEecccccc-hHHHHHHH------HhcC---CeEEEEccCCccCcccccccccc
Q 010538 113 TAALKLVGEAFP------W-SHQSSYMYTMENHNS-VLGIREYA------LSQG---AAAFAIDVEEAVDNDGLSESLVT 175 (508)
Q Consensus 113 t~al~~~~~~l~------~-~~g~~vl~~~~~h~s-~~~~~~~~------~~~G---~~v~~v~~~~~~~~~~l~~~~~~ 175 (508)
|+|+..++.... - ....+||.....|-. ........ ...+ ..+..++............ ..
T Consensus 121 SEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--~~ 198 (461)
T PRK07482 121 SDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGM--SE 198 (461)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCC--CH
Confidence 999988776542 1 123566665543322 22211110 0011 1122222211000000000 00
Q ss_pred ccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHH----HHHHHHcCCccccccCCCCCCCeEEEEecc
Q 010538 176 STKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLD----LINIMKKNPERILEISPFSKGRWMVLIDAA 251 (508)
Q Consensus 176 ~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~----~i~~l~~~~~~~~~~~~~~~~g~~vivD~a 251 (508)
......+++.++ +.+.+. ..+++..|++.-+....|.+.|.+ +|.++|+ ++|+++|+|++
T Consensus 199 ~~~~~~~~~~l~--~~~~~~--~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~------------~~giLlI~DEV 262 (461)
T PRK07482 199 EQFSAYCADELE--ELILAE--GPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLK------------KYDILLIADEV 262 (461)
T ss_pred HHHHHHHHHHHH--HHHHhc--CCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHH------------HhCCEEEEecc
Confidence 000011345555 444211 135688888888888888887644 5555555 49999999999
Q ss_pred cc-CCCCC----CCCCCCCCcEEEEeccccccCCC-cceEEEEechhHhhhccccccCceEEecccchhhhhhccCcccc
Q 010538 252 KG-CVTQP----PDLSKYPVDFVVMSFYKIFGYPT-GLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEEL 325 (508)
Q Consensus 252 ~~-~g~~~----~d~~~~~~D~~~~S~~K~~g~P~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 325 (508)
+. +|..- .+......|+++++ |.+++-. .+|.++++++..+.+.......+ ..
T Consensus 263 ~tGfGRtG~~~a~~~~gv~PDiv~~g--Kgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~-------------------~~ 321 (461)
T PRK07482 263 VTGFGRLGSMFGSDHYGIEPDLITVA--KGLTSAYAPLSGSIVGEKVWDVLEQGSDEHG-------------------AI 321 (461)
T ss_pred ccCCCcCcchhhHHhcCCCCCEEEEc--cccccCccccceeeecHHHHHHHhcccccCC-------------------cc
Confidence 86 33221 11112247999987 9765211 26888888887654432100000 00
Q ss_pred ccCCC--CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEE
Q 010538 326 FEDGT--ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFN 403 (508)
Q Consensus 326 ~~~gt--~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 403 (508)
...+| -|..+.++..++++.+.+ +++.++.+++.++|.+.|+++.. ...++..-. -.+.++.+.
T Consensus 322 ~h~~T~~gnpl~~Aaa~a~L~~~~~---~~l~~~~~~~g~~l~~~L~~l~~-----~~~~v~~vr------G~Glm~gie 387 (461)
T PRK07482 322 GHGWTYSGHPICAAAALANLDILER---ENLVGNAAEVGAYFRARLRAAFG-----DHPLVGEVR------GVGMLAAVE 387 (461)
T ss_pred ccCCCCCcCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHh-----cCCCEEEEe------eceeEEEEE
Confidence 01122 345566666777887765 35667788888888888875421 111111111 126677777
Q ss_pred eeCCCC--CccC-----HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEE
Q 010538 404 LKRPDG--SWFG-----YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIR 476 (508)
Q Consensus 404 ~~~~~~--~~~~-----~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iR 476 (508)
+..... ..++ ...+...+.++|+.++++. ..+.+|
T Consensus 388 l~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~~--------------------------------------~~~~i~ 429 (461)
T PRK07482 388 FVADRDDRTPFDPALKIGPQVSAAALERGVIARAMP--------------------------------------HGDILG 429 (461)
T ss_pred eccCCCcCCCCChhhHHHHHHHHHHHHCCcEEecCC--------------------------------------CCCEEE
Confidence 743111 1111 1346777888999986421 036799
Q ss_pred EecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 477 VSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 477 is~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
+.+.+-.|++||+++++.+.+.++.+
T Consensus 430 ~~Ppl~it~~ei~~~~~~l~~~l~~~ 455 (461)
T PRK07482 430 FAPPLVLTRAEADEIVAIAKDAVDEV 455 (461)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887654
|
|
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.2e-12 Score=124.09 Aligned_cols=299 Identities=11% Similarity=0.090 Sum_probs=191.0
Q ss_pred CCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCC-ccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHH
Q 010538 40 GTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHS-QSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKL 118 (508)
Q Consensus 40 ~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~ 118 (508)
..-|+|.-+++. .+-.+.. .++.. ..|++. .|...+-..-+...+..+..+..|.+... +-+|++|++-++.-
T Consensus 101 HprffNQl~~gl-D~~~Lag---~wlT~-t~Ntn~~TYEiAPvF~lmE~~vl~km~~ivGw~~~~-DgIf~pggsisn~Y 174 (510)
T KOG0629|consen 101 HPRFFNQLSSGL-DPIGLAG---EWLTS-TANTNMFTYEIAPVFVLMEEEVLAKMREIVGWEEGG-DGIFAPGGSISNMY 174 (510)
T ss_pred CCcchhhhccCC-CHHHHHH---HHHHh-ccCCCCceEEecceEEeehHHHHHHHHHHhCCCCCC-CceecCCchhHHHH
Confidence 456777766665 5544322 22222 123432 34444545556677888889999998742 57899888877654
Q ss_pred HHhhcC---C----------CCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhh
Q 010538 119 VGEAFP---W----------SHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQ 185 (508)
Q Consensus 119 ~~~~l~---~----------~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~ 185 (508)
++.+-. + -|.-.+.+++..|.|+.....++...--.++.|+.+..+.+ .+++
T Consensus 175 a~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~lg~gtd~c~~v~t~e~Gkm---------------~~~d 239 (510)
T KOG0629|consen 175 AMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKAAAFLGLGTDHCIKVKTDERGKM---------------IPDD 239 (510)
T ss_pred HHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHHHHHhccCCceeEEecccccCcc---------------chHH
Confidence 443321 1 12346777889999998887776443477899999988887 5788
Q ss_pred hhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCC-----
Q 010538 186 RRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPD----- 260 (508)
Q Consensus 186 l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d----- 260 (508)
++ +.|-+....+..+.+|..++..+..|+..|++.|+++|++ |+.|++||+|-+.|..-.-
T Consensus 240 Le--~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k------------~~lWmHvDAAwGGglLmS~k~R~k 305 (510)
T KOG0629|consen 240 LE--KKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEK------------HKLWMHVDAAWGGGLLMSRKHRHK 305 (510)
T ss_pred HH--HHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHh------------cCEEEEeecccccccccChhhHhh
Confidence 87 5553333334457999999999999999999999999997 9999999999876544211
Q ss_pred CCCC-CCcEEEEeccccccCCCcceEEEEechhH-hhhccccccCceEEecccchhhh-hhccCccccccCCC-CChhHH
Q 010538 261 LSKY-PVDFVVMSFYKIFGYPTGLGALIMRNDAA-KLLKNTYFSGGTVAASIADIDFV-KRRQGVEELFEDGT-ASFLSI 336 (508)
Q Consensus 261 ~~~~-~~D~~~~S~~K~~g~P~G~G~l~~~~~~~-~~l~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~gt-~~~~~~ 336 (508)
+.-. .+|.++.++||+.|.|--|+.++.+.+-+ ...... ...+......++ .-.+.+......|- .+..-+
T Consensus 306 l~Giera~SvtwnpHK~~gaplqCsa~l~r~~gll~~Cn~~-----~A~YLFq~dK~YdvS~DTgdK~iQCGRh~D~FKl 380 (510)
T KOG0629|consen 306 LTGIERANSVTWNPHKLMGAPLQCSAFLTREEGLLQRCNQM-----SAIYLFQQDKFYDVSYDTGDKAIQCGRHVDVFKL 380 (510)
T ss_pred ccCccccCceeecHHHhhcCcchhhHHHHHHHHHHHhhccc-----chhhhhccCceeecccccccchhhcCccccHHHH
Confidence 1111 57899999999999888899988876642 211111 000000000011 01112233344442 333333
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCC
Q 010538 337 ASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTY 387 (508)
Q Consensus 337 ~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~ 387 (508)
+-++.|- ...|.++...++.++++||.+.|++.. +...+...
T Consensus 381 WlmwkaK---G~~Gfe~~v~k~~~lA~yl~~~lrer~------~~~~l~~~ 422 (510)
T KOG0629|consen 381 WLMWKAK---GTQGFEAQVDKCLRLAEYLYDRLRERE------GFEMLFEL 422 (510)
T ss_pred HHHHHhc---ccccHHHHHHHHHHHHHHHHHHHHhcc------cceehhcC
Confidence 4333332 235889999999999999999999873 55555443
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-10 Score=121.37 Aligned_cols=347 Identities=10% Similarity=0.059 Sum_probs=198.9
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|||..+. +--+|.+++++.++.. ... ....... ......++.+++++.+....+ .+.|++++
T Consensus 42 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~-~~~-~~~~~~~----~~~~~~~lae~L~~~~p~~~~--~v~f~~sG 113 (429)
T PRK06173 42 DGRRLIDGMSSWWAALHGYNHPRLNAAATNQLA-KMS-HIMFGGF----THEPAVELAQKLLEILPPSLN--KIFFADSG 113 (429)
T ss_pred CCCEEEEccchHHhccCCCCCHHHHHHHHHHHH-hcC-Ccccccc----CCHHHHHHHHHHHhhCCCCcC--EEEEeCCc
Confidence 78889997543 4558888888766442 211 1111001 122344556667776654445 89999999
Q ss_pred HHHHHHHHhhcC-C------CCCCeEEEeccc-ccchHHHHHHH-----Hh--cC---CeEEEEccCCccCccccccccc
Q 010538 113 TAALKLVGEAFP-W------SHQSSYMYTMEN-HNSVLGIREYA-----LS--QG---AAAFAIDVEEAVDNDGLSESLV 174 (508)
Q Consensus 113 t~al~~~~~~l~-~------~~g~~vl~~~~~-h~s~~~~~~~~-----~~--~G---~~v~~v~~~~~~~~~~l~~~~~ 174 (508)
++|+..++.... . .+...|+..... |.......... .+ .+ ..+..+|......-+.
T Consensus 114 seAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~------ 187 (429)
T PRK06173 114 SVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKFGEE------ 187 (429)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCcccchh------
Confidence 999988765432 1 123556666543 33222221110 00 00 0122233211000000
Q ss_pred cccccccchhhhhcCCCCCCCCCCCCCceEEEEeCC-CCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEe
Q 010538 175 TSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSE-CNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLID 249 (508)
Q Consensus 175 ~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~-~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD 249 (508)
....+++.++ +.+.+ ..+++..|++..+ +...|.+.| ++++.++|+ ++|+++|+|
T Consensus 188 ---~~~~~l~~l~--~~i~~---~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~------------~~g~llI~D 247 (429)
T PRK06173 188 ---WNDEAIEPLQ--DLLEQ---KGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCD------------QYGVLLIFD 247 (429)
T ss_pred ---HHHHHHHHHH--HHHHh---CCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHH------------HcCCeEEec
Confidence 0000244455 44432 1356888888875 777788765 334444455 599999999
Q ss_pred ccccC-CCCC----CCCCCCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCcc
Q 010538 250 AAKGC-VTQP----PDLSKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 250 ~a~~~-g~~~----~d~~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
++|.. |..- .+......|++++ .|.+++- .-++.+++++++.+.+.+.. . .
T Consensus 248 Ev~tG~GrtG~~~a~~~~gv~PDiv~~--gK~l~gG~~p~~a~~~~~~i~~~~~~~~-~--------------------~ 304 (429)
T PRK06173 248 EIATGFGRTGKLFALEHAGVVPDIMCI--GKALTGGYLTLSATITTEAIAQTICSGE-A--------------------K 304 (429)
T ss_pred chhcCCCcCCcchHHHhcCCCCCEEEe--ehhhhCCccccceEEecHHHHHHHhcCC-C--------------------C
Confidence 99842 2211 1112224788875 5966521 12688888888766543210 0 0
Q ss_pred ccccCCC--CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEE
Q 010538 324 ELFEDGT--ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVS 401 (508)
Q Consensus 324 ~~~~~gt--~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 401 (508)
.....+| .+...+++..++++.+.+. .+.+++.++.++|.+.|+++. +...+..-. -++.++.
T Consensus 305 ~~~~~~T~~g~p~~~aaa~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~~~------~~~~v~~vR------g~Gl~~~ 369 (429)
T PRK06173 305 CFMHGPTFMANPLACAIAAESIRLLLES---PWQQNIQRIEAQLKQELAPAA------EFDSVAEVR------VLGAIGV 369 (429)
T ss_pred ccccCCCCCcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhh------cCCCeeeee------ccceEEE
Confidence 0001112 3556677777788887764 457888999999999987641 111122111 1277888
Q ss_pred EEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCC
Q 010538 402 FNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGY 481 (508)
Q Consensus 402 ~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~ 481 (508)
+.+.+.. ....+.+.|.++||.+++. .+.+|+.+.+
T Consensus 370 iel~~~~----~~~~i~~~l~e~Gi~v~~~----------------------------------------g~~l~~~Ppl 405 (429)
T PRK06173 370 VEMKEPV----NMATLQPRFVEHGIWVRPF----------------------------------------GKLVYIMPPF 405 (429)
T ss_pred EEeCCcc----cHHHHHHHHHHCCeEEEec----------------------------------------CCEEEEeCCc
Confidence 8886431 2235888899999998652 3589999999
Q ss_pred CCCHHHHHHHHHhhhhhhhh
Q 010538 482 MSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 482 ~~t~eev~~l~~~~~~~~~~ 501 (508)
-.|++|++++++++.+.+.-
T Consensus 406 ~it~~ei~~~~~~l~~~l~~ 425 (429)
T PRK06173 406 IISPDELSQLTSGLLRVLKQ 425 (429)
T ss_pred cCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999987753
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.7e-11 Score=121.10 Aligned_cols=359 Identities=11% Similarity=-0.013 Sum_probs=216.8
Q ss_pred eeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCC--------CceEEEcCChH
Q 010538 42 VYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMK--------DYKCIFTSGAT 113 (508)
Q Consensus 42 iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~--------~~~i~~t~g~t 113 (508)
-|+.+-.++.--|..+..++... .+..+..+...+...++..-+-.+++++++.|.. . --++.++++
T Consensus 75 ~fhAyfpa~~s~~siladmLs~~----i~~vGFtW~ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~G-gGviQ~tas 149 (511)
T KOG0628|consen 75 HFHAYFPAGNSYPSILADMLSGG----IGCVGFTWASSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDG-GGVIQGTAS 149 (511)
T ss_pred ceeeEccCccchHHHHHHHHhcc----cccccceeecCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCC-cceEecCcc
Confidence 34444444333344544444322 2223322333444556666688999999987533 0 123344555
Q ss_pred HHHHHHHhhcC------CCC------------CCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCcccccccccc
Q 010538 114 AALKLVGEAFP------WSH------------QSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVT 175 (508)
Q Consensus 114 ~al~~~~~~l~------~~~------------g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~ 175 (508)
++...++.+-. .+. .=++.+++..|.|+-..... .|++++.++.+.+..+
T Consensus 150 es~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y~SDqahssveka~~i---~~VklR~l~td~n~~m--------- 217 (511)
T KOG0628|consen 150 ESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAYCSDQAHSSVEKACLI---AGVKLRALPTDENFGM--------- 217 (511)
T ss_pred hhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEEecCcccchHHHhHhh---cceeEEEeecccCcCC---------
Confidence 55443332211 111 12566678889887654333 4789999998875555
Q ss_pred ccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCC
Q 010538 176 STKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCV 255 (508)
Q Consensus 176 ~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g 255 (508)
+.+.|. ++|.+..+.+--+-+++.+-..+.+-...++++|..+|++ +|+|++||++++..
T Consensus 218 ------r~~~L~--~AIe~D~arGlIPf~v~at~GTT~~ca~D~l~elg~Vc~~------------~glWLHVDAAYAGs 277 (511)
T KOG0628|consen 218 ------RGDTLR--KAIEEDIARGLIPFFVCATLGTTSSCAFDELEELGPVCRE------------EGLWLHVDAAYAGS 277 (511)
T ss_pred ------CHHHHH--HHHHHHHhCCCccEEEEEeecCccccccccHHHhcchhhh------------cCEEEEeehhhccc
Confidence 567777 6665544444456777888888888889999999999998 99999999999843
Q ss_pred CCC-CCCCCC-----CCcEEEEeccccccCCCcceEEEEechhH-h---hhccccccCceEEecccchhhhhhccCcccc
Q 010538 256 TQP-PDLSKY-----PVDFVVMSFYKIFGYPTGLGALIMRNDAA-K---LLKNTYFSGGTVAASIADIDFVKRRQGVEEL 325 (508)
Q Consensus 256 ~~~-~d~~~~-----~~D~~~~S~~K~~g~P~G~G~l~~~~~~~-~---~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 325 (508)
+-- ..++.+ .+|.+.+..|||+..---|..+|+++... . ...|.+..+.......+...|..+. .+|
T Consensus 278 a~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp~yL~h~~~~~~~Dyrhwqipl---~rR 354 (511)
T KOG0628|consen 278 AFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDPLYLKHAYQGSAPDYRHWQIPL---GRR 354 (511)
T ss_pred cccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCceeeeeeecChHhhcchhhccCCCcccccccc---ccc
Confidence 211 111111 47999999999877444589999988731 0 1234433332211223333343221 233
Q ss_pred ccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEee
Q 010538 326 FEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLK 405 (508)
Q Consensus 326 ~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 405 (508)
|+ -.-++-.++.+.-.++.+..++..+|++.+.+.+.+- +.+++..+.- -+.++|+++
T Consensus 355 fR--------SLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d------~~FE~~~~~~--------lgLvcFRlk 412 (511)
T KOG0628|consen 355 FR--------SLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRAD------PRFEIVNKRI--------LGLVCFRLK 412 (511)
T ss_pred hh--------hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcC------Ccceeecccc--------cceeEEeec
Confidence 32 1223344454444456666677778888888888776 4688887754 799999998
Q ss_pred CCCCCccCHHHHHHHHhh-CCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecC-CCC
Q 010538 406 RPDGSWFGYREVEKLASL-SGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFG-YMS 483 (508)
Q Consensus 406 ~~~~~~~~~~~l~~~L~~-~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~-~~~ 483 (508)
+.+. ++ ..+.+++.. ..|.+.+.+ .. ..-.+|++++ ..+
T Consensus 413 ~~N~--~n-e~Ll~~in~~g~i~l~~~~---l~---------------------------------gk~vlRf~V~s~~t 453 (511)
T KOG0628|consen 413 GDNE--IN-EALLNRLNSSGRIHLVPAS---LH---------------------------------GKFVLRFAVCSPLT 453 (511)
T ss_pred CCcH--HH-HHHHHHHHhcCcEEEEEee---ec---------------------------------ceEEEEEEecCCCC
Confidence 7532 22 335555554 456554422 10 1457999988 558
Q ss_pred CHHHHHHHHHhhhhhhhh
Q 010538 484 TFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 484 t~eev~~l~~~~~~~~~~ 501 (508)
+.+||++..+.|.+....
T Consensus 454 ~~~di~~a~~~I~~~a~~ 471 (511)
T KOG0628|consen 454 NESDIDEAWKIIFEAADE 471 (511)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 899999999988876654
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.8e-10 Score=119.59 Aligned_cols=363 Identities=11% Similarity=0.051 Sum_probs=202.1
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+ .+--+|.+++++.+++. .........+ ......++-+++++.++...+ .+.|++++
T Consensus 52 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~-~~~~~~~~~~-----~~~~~~~lAe~L~~~~p~~~~--~v~f~~sG 123 (453)
T PRK06943 52 DGRRYLDAISSWWVNLFGHANPRINAALKDQLD-TLEHAMLAGC-----THEPAIELAERLAALTGGTLG--HAFFASDG 123 (453)
T ss_pred CCCEEEEcchHHHHhcCCCCCHHHHHHHHHHHH-hcCCcccccc-----CCHHHHHHHHHHHHhCCCCCC--EEEEeCCC
Confidence 7888999743 35668888888766543 2110011011 122334556667777665445 79999999
Q ss_pred HHHHHHHHhhcC-------CCCCCeEEEecccccc-hHHHHHHHH----h--cC---CeEEEEccCCccCcccccccccc
Q 010538 113 TAALKLVGEAFP-------WSHQSSYMYTMENHNS-VLGIREYAL----S--QG---AAAFAIDVEEAVDNDGLSESLVT 175 (508)
Q Consensus 113 t~al~~~~~~l~-------~~~g~~vl~~~~~h~s-~~~~~~~~~----~--~G---~~v~~v~~~~~~~~~~l~~~~~~ 175 (508)
|+|+..++.... ..+..+||.....|-. ......... + ++ ..+..+|........ ..+ ..
T Consensus 124 seAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~--~~ 200 (453)
T PRK06943 124 ASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGAR-PGE--TA 200 (453)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccc-cCC--CH
Confidence 999988776541 1223566666544432 222221110 0 00 112233322110000 000 00
Q ss_pred ccccccchhhhhcCCCCCCCCCCCCCceEEEEeC-CCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEecccc-
Q 010538 176 STKISLLPIQRRKGASFPERDPAGDAYNLFAFPS-ECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKG- 253 (508)
Q Consensus 176 ~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~-~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~- 253 (508)
.+...-+++.++ +.+++ ..+++..|++.- ++...|.+.|-+..-+-+++ +|++||+++|+|+++.
T Consensus 201 ~~~~~~~~~~l~--~~l~~---~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~--------lc~~~gillI~DEV~TG 267 (453)
T PRK06943 201 ADVAARALADVR--RLFAE---RAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRA--------LCDRYGVHLIADEIAVG 267 (453)
T ss_pred HHHHHHHHHHHH--HHHHh---CCCceEEEEEeccccccCCcccCCHHHHHHHHH--------HHHHcCCEEEeechhhC
Confidence 000001235555 44432 235788888887 47778887763322222222 4445999999999985
Q ss_pred CCCCCC----CCCCCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccC
Q 010538 254 CVTQPP----DLSKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFED 328 (508)
Q Consensus 254 ~g~~~~----d~~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (508)
+|..-. +.-....|+++++ |.+++= .-+|.+++++++.+.+.+....+ ..+..
T Consensus 268 ~GRtG~~fa~~~~gv~PDivt~g--Kgl~gG~~Pi~av~~~~ei~~~~~~~~~~~--------------------~~~~~ 325 (453)
T PRK06943 268 CGRTGTFFACEQAGVWPDFLCLS--KGISGGYLPLSLVLSRDAIFAAFYDDDVTR--------------------GFLHS 325 (453)
T ss_pred CCCCcchhHHHhCCCCCCeEeee--hhhccCcccceEEEEcHHHHHhhcccCccC--------------------CccCC
Confidence 443211 1112347999997 955521 12799999998876554210000 00112
Q ss_pred CC--CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeC
Q 010538 329 GT--ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKR 406 (508)
Q Consensus 329 gt--~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 406 (508)
+| -|..+.++..++++.+.+. ++.++..++.++|.+.|+++.. .+.+.-+ .+ ++.++.+.+..
T Consensus 326 ~T~~gnpl~~aaa~a~L~~i~~~---~l~~~~~~~G~~l~~~L~~l~~---~~~v~~v--rG-------~Gl~~gvel~~ 390 (453)
T PRK06943 326 HSYTGNPLACRAALATLDLFAED---DVLARNARKSARLRAALAPLAA---HPQVRHL--RQ-------RGTIFAFDVAL 390 (453)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhc---CCCEEeE--ec-------cccEEEEEEcc
Confidence 22 3555666777778877663 4667888888888888877520 1223211 11 26777777752
Q ss_pred -CCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCH
Q 010538 407 -PDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTF 485 (508)
Q Consensus 407 -~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ 485 (508)
.+...-....+.+.+.++|+.+.+. .+.+|+++.+-.|+
T Consensus 391 ~~~~~~~~~~~i~~~~~~~Gll~~~~----------------------------------------g~~l~~~Ppl~it~ 430 (453)
T PRK06943 391 DGDAARTFSRRFFEAALERELLLRPI----------------------------------------GTTVYLMPPYVLDD 430 (453)
T ss_pred CCCcchHHHHHHHHHHHHCCcEEEec----------------------------------------CCEEEEeCCCcCCH
Confidence 1111001234677788899998641 24699999999999
Q ss_pred HHHHHHHHhhhhhhhhh
Q 010538 486 EDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 486 eev~~l~~~~~~~~~~~ 502 (508)
+||+++++.+.+.++.+
T Consensus 431 ~eid~~~~~l~~al~~~ 447 (453)
T PRK06943 431 DEIAWLAERTRATLDAT 447 (453)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999887654
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.8e-10 Score=120.63 Aligned_cols=365 Identities=13% Similarity=0.105 Sum_probs=202.6
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+ .+--+|.+.+++.++.. ... .....+. ......++-+++++.+....+ .+.|++++
T Consensus 51 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~-~~~-~~~~~~~----~~~~~~~lae~L~~~~p~~~~--~v~f~~SG 122 (457)
T PRK05639 51 DGNVFIDFLAGAAAASTGYSHPKLVKAVQEQVA-LIQ-HSMIGYT----HSERAIRVAEKLAEISPIENP--KVLFGLSG 122 (457)
T ss_pred CCCEEEECCcCHHhhccCCCCHHHHHHHHHHHH-hcc-ccccCcc----CCHHHHHHHHHHHhhCCCCcC--EEEEeCch
Confidence 6788999843 34558888888766542 211 1111111 112334456667777654445 79999999
Q ss_pred HHHHHHHHhhcC-CCCCCeEEEecc-cccchHHHHHHHH-----hcC-----CeEEEEccCCccCcc-cccccccccccc
Q 010538 113 TAALKLVGEAFP-WSHQSSYMYTME-NHNSVLGIREYAL-----SQG-----AAAFAIDVEEAVDND-GLSESLVTSTKI 179 (508)
Q Consensus 113 t~al~~~~~~l~-~~~g~~vl~~~~-~h~s~~~~~~~~~-----~~G-----~~v~~v~~~~~~~~~-~l~~~~~~~~~~ 179 (508)
++|+..++.... ..+...||.... -|........... +.+ ..+..+|........ ...+.-.+....
T Consensus 123 sEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 202 (457)
T PRK05639 123 SDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELI 202 (457)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHHH
Confidence 999988776542 234456666544 3443333332211 011 123444443210000 000000000000
Q ss_pred ccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCH----HHHHHHHcCCccccccCCCCCCCeEEEEecccc-C
Q 010538 180 SLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNL----DLINIMKKNPERILEISPFSKGRWMVLIDAAKG-C 254 (508)
Q Consensus 180 ~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i----~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~-~ 254 (508)
....+.++ +.+.+.....+++..|++.-+....|.+.|. +++.++|++ +|+++|+|++|+ +
T Consensus 203 ~~~~~~le--~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~------------~g~llI~DEv~tG~ 268 (457)
T PRK05639 203 NRFLDYLE--NYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDE------------HGILLVMDEVQTGI 268 (457)
T ss_pred HHHHHHHH--HHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHH------------cCCEEEEechhhcc
Confidence 00112333 2221100113578999998888888887773 355555554 999999999987 2
Q ss_pred CCCC----CCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCC
Q 010538 255 VTQP----PDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGT 330 (508)
Q Consensus 255 g~~~----~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt 330 (508)
|..- .+......|++++ .|.+++-.++|++++++++.+ .. .+.. .....
T Consensus 269 GrtG~~~a~~~~gv~PDiv~~--gK~l~gG~pi~av~~~~~i~~-~~----~~~~--------------------~~T~~ 321 (457)
T PRK05639 269 GRTGKWFASEWFEVKPDLIIF--GKGVASGMGLSGVIGRKELMD-LT----SGSA--------------------LLTPA 321 (457)
T ss_pred CcCchHHHHHhcCCCCCEEEe--chhhcCCCcceeEEehHHHHh-hc----CCCc--------------------ccCCC
Confidence 2111 1111225799996 497763234799999988865 21 1100 00112
Q ss_pred CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCC-
Q 010538 331 ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDG- 409 (508)
Q Consensus 331 ~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~- 409 (508)
.|....++..++++.+.+ +++.++..++.++|++.|+++.. ...++..-.. .+.++.+.+.....
T Consensus 322 g~p~~~aaa~a~l~~l~~---~~l~~~~~~~g~~l~~~L~~l~~-----~~~~~~~VrG------~Gl~~gve~~~~~~~ 387 (457)
T PRK05639 322 ANPVISAAAEATLEIIEE---ENLLKNALKVGEFIKKRLLEMKE-----SFEVIGDVRG------KGLMIGVEIVKENGK 387 (457)
T ss_pred cCHHHHHHHHHHHHHHHH---ccHHHHHHHHHHHHHHHHHHHHH-----hCCCEEeecc------ceeEEEEEEecCCCC
Confidence 344556666677887765 45667788888999988877521 1222222111 26667766643211
Q ss_pred -CccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHH
Q 010538 410 -SWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDA 488 (508)
Q Consensus 410 -~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev 488 (508)
..-....+.+.+.++|+.+.+.. ...+.+|+++.+-.|++|+
T Consensus 388 ~~~~~~~~~~~~~~~~Gv~~~~~g-------------------------------------~~~~~lr~~Ppl~it~~~i 430 (457)
T PRK05639 388 PDPELTGKICWRAFELGLILPSYG-------------------------------------MFGNVIRITPPLVITKEIA 430 (457)
T ss_pred CCHHHHHHHHHHHHhCCeEEeecC-------------------------------------CCCCEEEEeCCCccCHHHH
Confidence 00012346777788999986520 0146899999999999999
Q ss_pred HHHHHhhhhhhhhhh
Q 010538 489 KVNRCSSFDFVNFSQ 503 (508)
Q Consensus 489 ~~l~~~~~~~~~~~~ 503 (508)
+++++++.+.++.+.
T Consensus 431 d~~~~~l~~~l~~~~ 445 (457)
T PRK05639 431 EKGLEIMERAIKDAL 445 (457)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887654
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.8e-10 Score=118.20 Aligned_cols=352 Identities=14% Similarity=0.033 Sum_probs=209.8
Q ss_pred CCCeeeeCC--CCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHH
Q 010538 39 NGTVYLDHA--GAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~--~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~a 115 (508)
.+-+|.|-- +.| .|++...++++. -++. |.. ..-+.++++.+++++|.+. +++|..++.+
T Consensus 39 s~dV~IDLrSDTgT~apS~~m~aAM~~--GDD~-------Y~g----dpSv~~Lee~vael~G~E~----alpthqGRga 101 (467)
T TIGR02617 39 SEDVFIDLLTDSGTGAVTQSMQAAMMR--GDEA-------YSG----SRSYYALAESVKNIFGYQY----TIPTHQGRGA 101 (467)
T ss_pred CCCeEEECccCCCCCCCCHHHHHHHHc--CCcc-------ccc----CchHHHHHHHHHHHhCCce----EEECCCCchH
Confidence 455666654 444 367777766643 1111 111 1225677899999999974 5889888988
Q ss_pred HHHHHhhcCCCCCCeEEEecc----cccchHH-HHHHHHhcCCeEEEEccC----------CccCccccccccccccccc
Q 010538 116 LKLVGEAFPWSHQSSYMYTME----NHNSVLG-IREYALSQGAAAFAIDVE----------EAVDNDGLSESLVTSTKIS 180 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~----~h~s~~~-~~~~~~~~G~~v~~v~~~----------~~~~~~~l~~~~~~~~~~~ 180 (508)
-+++...+..++|+++++... .|..... +...+...|+.++.++.+ .++.+
T Consensus 102 E~Il~~~~~~~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~-------------- 167 (467)
T TIGR02617 102 EQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNF-------------- 167 (467)
T ss_pred HHHHHHhhcccccccccccccccccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCc--------------
Confidence 888888885446777775443 3433333 222344568888776432 13444
Q ss_pred cchhhhhcCCCCCCCCCCCCCceEEEEeCC-CCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC-----
Q 010538 181 LLPIQRRKGASFPERDPAGDAYNLFAFPSE-CNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----- 254 (508)
Q Consensus 181 ~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~-~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----- 254 (508)
|+++++ ++|++..+ ++...+..+-. |..-|..+|++.|.++.+ +|+++|+.++.|++--+
T Consensus 168 -dl~~le--~~I~~~g~--~~i~~v~~tlt~N~~GGqpvslenlr~V~~---------la~~~GIplhLDgARl~nNA~f 233 (467)
T TIGR02617 168 -DLEGLE--RGIEEVGP--NNVPYIVATITCNSAGGQPVSLANLKAVYE---------IAKKYDIPVVMDSARFAENAYF 233 (467)
T ss_pred -CHHHHH--HHHhhcCC--CCceeeeeeEEEecCCCEEeCHHHHHHHHH---------HHHHcCCcEEEEhHHHHHHhhh
Confidence 788998 88764211 12222222222 334588999888777766 66779999999997422
Q ss_pred ------CCCCCCCCC------CCCcEEEEeccccccCCCcceEEEEech----hHhhhccccccCceEEecccchhhhhh
Q 010538 255 ------VTQPPDLSK------YPVDFVVMSFYKIFGYPTGLGALIMRND----AAKLLKNTYFSGGTVAASIADIDFVKR 318 (508)
Q Consensus 255 ------g~~~~d~~~------~~~D~~~~S~~K~~g~P~G~G~l~~~~~----~~~~l~~~~~g~~~~~~~~~~~~~~~~ 318 (508)
+....++++ ..+|.+++|++|-+|.|-| |+|.++++ +.++.+....-.
T Consensus 234 Ik~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgApvG-g~Lag~d~~~~~l~~~~~~~~i~~--------------- 297 (467)
T TIGR02617 234 IKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCFKDDSFFDVYTECRTLCVVQ--------------- 297 (467)
T ss_pred hhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCCccc-ceEEecchhHHHHHHHHHhhcccc---------------
Confidence 344454432 2689999999998887877 78887766 222333321100
Q ss_pred ccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCc
Q 010538 319 RQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGS 398 (508)
Q Consensus 319 ~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (508)
+.....|..+.-.+-+++..|+... -+...++-....+||.+.|.+. |+.++. .+ ++
T Consensus 298 ----EGf~tYGGlagrd~ea~a~Gl~e~~---~~~yl~~ri~qv~yl~~~L~~~-------Gvpi~~-~G--------gh 354 (467)
T TIGR02617 298 ----EGFPTYGGLEGGAMERLAVGLYDGM---NLDWLAYRINQVQYLVNGLEEI-------GVVCQQ-AG--------GH 354 (467)
T ss_pred ----cCCcCcCchhHHHHHHHHhhhhhcc---cHHHHHHHHHHHHHHHHHHHhC-------CCcEEe-cC--------cc
Confidence 1112235555555666666665432 2444455566688999999886 777766 32 45
Q ss_pred eEEEE----eeCCCCCccCHHHHHHHH-hhCCCeec-cCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCC--
Q 010538 399 MVSFN----LKRPDGSWFGYREVEKLA-SLSGIQLR-TGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGK-- 470 (508)
Q Consensus 399 ~v~~~----~~~~~~~~~~~~~l~~~L-~~~gI~v~-~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~-- 470 (508)
-+.++ +++.+..++....+...| .+.||.-. -|+...... + .+++
T Consensus 355 av~iDa~~~lphip~~~fpa~al~~~ly~~~GiR~~e~G~~~~~rd------------------------~---~~~~~~ 407 (467)
T TIGR02617 355 AAFVDAGKLLPHIPADQFPAHALACELYKVAGIRAVEIGSLLLGRD------------------------P---KTGKQL 407 (467)
T ss_pred EEEEehhhhCCCCChhhCcHHHHHHHHHHHcCcceEeecceecccC------------------------C---CCCccC
Confidence 55554 355666666555555544 67788732 232211110 0 0011
Q ss_pred C--CceEEEecC-CCCCHHHHHHHHHhhhhhhhh
Q 010538 471 P--TGAIRVSFG-YMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 471 ~--~~~iRis~~-~~~t~eev~~l~~~~~~~~~~ 501 (508)
. -..+|+++. ---|.+.+|.+++.+..+.+.
T Consensus 408 ~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~ 441 (467)
T TIGR02617 408 PCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_pred CCccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence 1 257999977 334889999999998877643
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.6e-10 Score=118.94 Aligned_cols=348 Identities=14% Similarity=0.074 Sum_probs=196.4
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+. |--+|.+++++.++.. ... .... ......++-+++.+.+....+ .+.|++++
T Consensus 51 dG~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~-~~~---~~~~-----~~~~~~~la~~L~~~~~~~~~--~v~f~~SG 119 (433)
T PRK00615 51 LGKTFIDFCGSWGSLIHGHSHPKICDAIQQGAE-RGT---SYGL-----TSEQEILFAEELFSYLGLEDH--KIRFVSSG 119 (433)
T ss_pred CCCEEEEcccchhccccCCCCHHHHHHHHHHHH-hCC---CCCC-----CCHHHHHHHHHHHHhCCCCcC--EEEEeCch
Confidence 67889998443 4558888888766542 211 1111 122344455666677654334 79999999
Q ss_pred HHHHHHHHhhcC-CCCCCeEEEecccccchHHH-HHHHHhcCCe---EEEEc-cCC-ccCccccccccccccccccchhh
Q 010538 113 TAALKLVGEAFP-WSHQSSYMYTMENHNSVLGI-REYALSQGAA---AFAID-VEE-AVDNDGLSESLVTSTKISLLPIQ 185 (508)
Q Consensus 113 t~al~~~~~~l~-~~~g~~vl~~~~~h~s~~~~-~~~~~~~G~~---v~~v~-~~~-~~~~~~l~~~~~~~~~~~~d~~~ 185 (508)
++|+..++.... ..+...|+.....|-+...+ .......+.. ..... ... ..... ... -.|++.
T Consensus 120 sEA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~---~~d~~~ 190 (433)
T PRK00615 120 TEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTL------SLP---YNDFQI 190 (433)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeE------eCC---CCCHHH
Confidence 999988776542 33445666655433222111 1100000100 00000 000 00000 000 013556
Q ss_pred hhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHH----HHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC-C--
Q 010538 186 RRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLD----LINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ-P-- 258 (508)
Q Consensus 186 l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~----~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~-~-- 258 (508)
++ +.+.+. .+++..|++..+....|.+.|.+ +|.++|++ ||+++|+|++|. |.. .
T Consensus 191 l~--~~l~~~---~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~------------~g~llI~DEv~t-G~R~G~~ 252 (433)
T PRK00615 191 FQ--TVMNSL---GHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRR------------TGSLSIMDEVVT-GFRVAQG 252 (433)
T ss_pred HH--HHHHhc---CCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHH------------cCCEEEEEcccc-cccccHh
Confidence 66 555321 35678999998999999999865 77777776 999999999984 321 0
Q ss_pred --CCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCC--CChh
Q 010538 259 --PDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGT--ASFL 334 (508)
Q Consensus 259 --~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt--~~~~ 334 (508)
........|++++ .|.+|+-.-+|++++++++.+.+.+. + ..+..+| .|..
T Consensus 253 ga~~~~gv~PDi~~~--gK~lggG~p~~av~~~~~i~~~~~~~--~---------------------~~~~~~T~~g~p~ 307 (433)
T PRK00615 253 GAAAIYHVKPDITVY--GKILGGGLPAAAVVAHKSIMDHLAPE--G---------------------TIFQAGTLSGNPL 307 (433)
T ss_pred HHHHhcCCCCCeEEE--cccccCCcceeeeeecHHHHhhhcCC--C---------------------CcccCCCCcccHH
Confidence 0111224788775 59776211168889999887665431 0 0011223 3556
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCcc--
Q 010538 335 SIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWF-- 412 (508)
Q Consensus 335 ~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-- 412 (508)
.+++..++++.+.+ +.+.+++.++.++|.+.|+++....+.+ +.... .+.++.+.+.+.....+
T Consensus 308 ~~aa~la~L~~i~~---~~~~~~~~~~g~~l~~~l~~~~~~~g~~-v~~~r----------~G~~~~i~~~~~~~~~~~~ 373 (433)
T PRK00615 308 AMAAGKASINLCRE---QGFYTQLSTLEQNFLSPIEEMIRSQGFP-VSLVR----------YGSMFSFFFNENRPNNLAE 373 (433)
T ss_pred HHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEe----------eceEEEEEEeCCCCCChHH
Confidence 67777778888765 3457888888888877776531100011 22222 26677777753211100
Q ss_pred -------CHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCH
Q 010538 413 -------GYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTF 485 (508)
Q Consensus 413 -------~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ 485 (508)
....+.+.|.++||.+.++.. +. ..++.-+|+
T Consensus 374 ~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--------------------------------------~~---~~ls~~ht~ 412 (433)
T PRK00615 374 AQLSDIEAFQTFYQSAFSKGVYLSPSPF--------------------------------------EA---SFLSSAHSM 412 (433)
T ss_pred HhhCCHHHHHHHHHHHHHCCeeecCccc--------------------------------------cc---cceecCCCH
Confidence 012477788889999866320 11 145555699
Q ss_pred HHHHHHHHhhhhhhhhhhh
Q 010538 486 EDAKVNRCSSFDFVNFSQF 504 (508)
Q Consensus 486 eev~~l~~~~~~~~~~~~~ 504 (508)
+|||++++++.++++-+-.
T Consensus 413 ~did~~~~a~~~~~~~~~~ 431 (433)
T PRK00615 413 ENLDYAQNVLIDSLEKVFS 431 (433)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999998876543
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-10 Score=121.78 Aligned_cols=346 Identities=11% Similarity=0.084 Sum_probs=196.0
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+ .+--+|.+++++.++.. ... ....... ......++.+++++++....+ .+.|++++
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~-~~~-~~~~~~~----~~~~~~~lae~L~~~~p~~~~--~v~f~~SG 109 (422)
T PRK05630 38 DGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQID-TMS-HVMFGGL----THEPAIKLTRKLLNLTDNGLD--HVFYSDSG 109 (422)
T ss_pred CCCEEEEcchhHHHhcCCCCCHHHHHHHHHHHH-hCC-CcccCCc----CCHHHHHHHHHHHhhCCCCcC--EEEEeCCc
Confidence 7889999743 35557888888766543 211 1111000 122344556667777654445 79999999
Q ss_pred HHHHHHHHhhcC-C------CCCCeEEEeccc-ccchHHHHHHHHh-------cC---CeEEEEccCCccCccccccccc
Q 010538 113 TAALKLVGEAFP-W------SHQSSYMYTMEN-HNSVLGIREYALS-------QG---AAAFAIDVEEAVDNDGLSESLV 174 (508)
Q Consensus 113 t~al~~~~~~l~-~------~~g~~vl~~~~~-h~s~~~~~~~~~~-------~G---~~v~~v~~~~~~~~~~l~~~~~ 174 (508)
++|+..++.... . ....+|+..... |............ .+ ..+..+|.... .....
T Consensus 110 seA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~----- 183 (422)
T PRK05630 110 SVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPV-RGSSP----- 183 (422)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcc-cCCCh-----
Confidence 999987765431 1 123456665543 3333322211100 00 11222332210 00000
Q ss_pred cccccccchhhhhcCCCCCCCCCCCCCceEEEEeCC-CCCCccccCH----HHHHHHHcCCccccccCCCCCCCeEEEEe
Q 010538 175 TSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSE-CNFSGSRFNL----DLINIMKKNPERILEISPFSKGRWMVLID 249 (508)
Q Consensus 175 ~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~-~n~tG~~~~i----~~i~~l~~~~~~~~~~~~~~~~g~~vivD 249 (508)
+......+.++ +.+ .+++..|++.-. ....|.+.|- +++.++|+ ++|+++|+|
T Consensus 184 --~~~~~~~~~~~--~~~------~~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~------------~~g~llI~D 241 (422)
T PRK05630 184 --QEISEYLRSLE--LLI------DETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCD------------KHDILLIAD 241 (422)
T ss_pred --HHHHHHHHHHH--HHH------hhceEEEEEechhcCcCCcccCCHHHHHHHHHHHH------------HcCCEEEEe
Confidence 00000123344 222 246788888774 7777887663 34445555 599999999
Q ss_pred cccc-CCCCC----CCCCCCCCcEEEEeccccccC--CCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCc
Q 010538 250 AAKG-CVTQP----PDLSKYPVDFVVMSFYKIFGY--PTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGV 322 (508)
Q Consensus 250 ~a~~-~g~~~----~d~~~~~~D~~~~S~~K~~g~--P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~ 322 (508)
+++. +|..- .+......|+++++ |.+++ ++ +|+++++++..+.+.... +.+. +
T Consensus 242 Ev~tG~GrtG~~~a~~~~gv~PDi~t~g--K~l~gG~~p-~~av~~~~~i~~~~~~~~-~~~~---------~------- 301 (422)
T PRK05630 242 EIATGFGRTGELFATLAAGVTPDIMCVG--KALTGGFMS-FAATLCTDKVAQLISTPN-GGGA---------L------- 301 (422)
T ss_pred cceeCCCcCchhhHHHhcCCCCCeeeee--chhhcCccc-cceeeccHHHHHHHhccC-CCCc---------c-------
Confidence 9985 23211 11122347888665 97743 33 688888988876553210 0000 0
Q ss_pred cccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEE
Q 010538 323 EELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSF 402 (508)
Q Consensus 323 ~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 402 (508)
. .......|....++..++++.+.+. ...+++.++.++|++.|+++.. .+.+ .+-. -++.++.+
T Consensus 302 ~-h~~T~~g~Pla~aaa~aaL~~l~~~---~~~~~~~~~g~~l~~~L~~l~~---~~~v---~~vR------g~Gl~~~i 365 (422)
T PRK05630 302 M-HGPTFMANPLACAVAHASLEIIETG---MWRKQVKRIEAELIAGLSPLAH---LPGV---ADVR------VLGAIGVV 365 (422)
T ss_pred c-cCCCCcCCHHHHHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHhhc---CCCe---eeee------ccccEEEE
Confidence 0 0001124556677777788888664 4567888889999888875420 1122 1111 13788888
Q ss_pred EeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC
Q 010538 403 NLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM 482 (508)
Q Consensus 403 ~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 482 (508)
.+.+.. ....+.+.+.++|+.+.+. .+.+|+.+.+-
T Consensus 366 e~~~~~----~~~~~~~~~~~~Gl~~~~~----------------------------------------g~~l~~~PpL~ 401 (422)
T PRK05630 366 EMEQPV----DMEEATQAAVDHGVWLRPF----------------------------------------GRLVYVMPPYI 401 (422)
T ss_pred EECCcc----cHHHHHHHHHHCCeEEEec----------------------------------------CCEEEEECCcc
Confidence 885431 1235778888999998641 35799999999
Q ss_pred CCHHHHHHHHHhhhhhhh
Q 010538 483 STFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 483 ~t~eev~~l~~~~~~~~~ 500 (508)
.|++|++++++.+.+.++
T Consensus 402 it~~~i~~~~~~l~~al~ 419 (422)
T PRK05630 402 TTSEQIAQICAALAAAVK 419 (422)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 999999999999988765
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-09 Score=115.96 Aligned_cols=361 Identities=13% Similarity=0.108 Sum_probs=200.8
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..+. +--+|.+.+++.++...-.+..+.... ......++-+++++++....+ .+.|++|+
T Consensus 49 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~-----~~~~~~~lae~L~~~~p~~~~--~v~f~~sG 121 (466)
T PRK07036 49 DGRRYLDGIGGMWCVNVGYGREEMADAIADQARRLPYYTPFGDM-----TNAPAAELAAKLAELAPGDLN--HVFLTTGG 121 (466)
T ss_pred CCCEEEECcccHHhhcCCCCCHHHHHHHHHHHHhCccccccccc-----CCHHHHHHHHHHHHhCCCCcC--EEEEeCCc
Confidence 78889997543 555888888876654321111111000 122344555666676654445 79999999
Q ss_pred HHHHHHHHhhcC-C------CCCCeEEEeccc-ccchHHHHHHHHhc------C---CeEEEEccCCccCc-cccccccc
Q 010538 113 TAALKLVGEAFP-W------SHQSSYMYTMEN-HNSVLGIREYALSQ------G---AAAFAIDVEEAVDN-DGLSESLV 174 (508)
Q Consensus 113 t~al~~~~~~l~-~------~~g~~vl~~~~~-h~s~~~~~~~~~~~------G---~~v~~v~~~~~~~~-~~l~~~~~ 174 (508)
|+|+..++.... . .+..+|+..... |............. + ..+..+|....... ... .
T Consensus 122 seAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~----~ 197 (466)
T PRK07036 122 STAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGM----S 197 (466)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCC----C
Confidence 999988776431 1 113566665433 32222221110000 0 11222322110000 000 0
Q ss_pred cccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEec
Q 010538 175 TSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDA 250 (508)
Q Consensus 175 ~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~ 250 (508)
........++.++ +.+.+ ...+++..|++..+....|.+.| ++.+.++|++ +|+++|+|+
T Consensus 198 ~~~~~~~~~~~~~--~~i~~--~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~------------~g~llI~DE 261 (466)
T PRK07036 198 EAAFCDFLVDEFE--DKILS--LGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRR------------YDILYISDE 261 (466)
T ss_pred hHHHHHHHHHHHH--HHHHH--cCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHH------------cCCEEEEee
Confidence 0000000122333 22211 12357889999989888899988 6677777776 999999999
Q ss_pred ccc-CCCCC--CCCC---CCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCcc
Q 010538 251 AKG-CVTQP--PDLS---KYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 251 a~~-~g~~~--~d~~---~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
+++ +|..- .-.. ....|+++++ |.+++- .-+|.+++++++.+.+.+....+.
T Consensus 262 V~tGfGRtG~~~~~~~~~gv~PDivt~g--K~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~------------------- 320 (466)
T PRK07036 262 VVTGFGRLGHFFASEAVFGIQPDIITFA--KGLTSGYQPLGAVIISERLLDVISGPNAKGN------------------- 320 (466)
T ss_pred chhCCCcCchhhhhhhhcCCCCCEEEEc--cccccCccccEEEEEcHHHHHHHhcccCcCc-------------------
Confidence 985 44321 1111 2247898886 976631 017999999988765543100000
Q ss_pred ccccCCC--CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEE
Q 010538 324 ELFEDGT--ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVS 401 (508)
Q Consensus 324 ~~~~~gt--~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 401 (508)
.....+| -|...+++..++++.+.+ +++.++..++.++|++.|+++.. .+. +..-. -.+.++.
T Consensus 321 ~~~~~~T~~gnpl~~aaa~a~Le~i~~---~~l~~~~~~~g~~l~~~L~~l~~---~~~---v~~vr------G~Gl~~~ 385 (466)
T PRK07036 321 VFTHGFTYSGHPVACAAALKNIEIMER---EGLCEHVREVGPYFEERLASLRE---LPL---VGDVR------GDHLMAC 385 (466)
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHhcc---CCC---EEEEE------eeceEEE
Confidence 0001112 345556666777887765 35778888999999998876520 111 11111 1267777
Q ss_pred EEeeCCCC-C---ccC---HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCce
Q 010538 402 FNLKRPDG-S---WFG---YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGA 474 (508)
Q Consensus 402 ~~~~~~~~-~---~~~---~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (508)
+.+...+. . ..+ ...+.+.+.++||.+.+. .+.
T Consensus 386 ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~----------------------------------------~~~ 425 (466)
T PRK07036 386 VECVADKGSKALLPEDIAIGQRIDRHCQERGLLVRPL----------------------------------------EHL 425 (466)
T ss_pred EEEccCccccCCCCchhHHHHHHHHHHHHCCcEEeec----------------------------------------CCE
Confidence 77743211 0 001 134667778899998641 256
Q ss_pred EEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 475 IRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 475 iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
+|+++.+-.|++||+++++.+.+.++-+
T Consensus 426 ~~l~Ppl~it~~~id~~~~~l~~al~~~ 453 (466)
T PRK07036 426 CVLSPPLIITRAQIDEIVAILRAAIEET 453 (466)
T ss_pred EEEeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999998877554
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.5e-10 Score=117.02 Aligned_cols=354 Identities=13% Similarity=0.074 Sum_probs=196.7
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhcccc-CCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCC
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVY-GNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g 111 (508)
++.-|+|..+. +.-+|.+++++.+++. ... ......+ ......++.+++++++....+ .+.|+++
T Consensus 48 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~-~~~~~~~~~~~-----~~~~~~~lae~L~~~~p~~~~--~v~f~~S 119 (456)
T PRK07480 48 EGNKILDGMAGLWCVNVGYGRKELADAAARQMR-ELPYYNTFFKT-----THPPAIELAAKLAEVAPPGFN--HVFFTNS 119 (456)
T ss_pred CCCEEEEccchHHHhcCCCCCHHHHHHHHHHHH-hcCCccccccc-----CCHHHHHHHHHHHHhCCCCcC--EEEEeCC
Confidence 67889998543 5557888888766543 211 1111011 123345566777777754445 7999999
Q ss_pred hHHHHHHHHhhcCC-------CCCCeEEEecc-cccchHHHHHHH------HhcCC---eEEEEccCCccC--ccccccc
Q 010538 112 ATAALKLVGEAFPW-------SHQSSYMYTME-NHNSVLGIREYA------LSQGA---AAFAIDVEEAVD--NDGLSES 172 (508)
Q Consensus 112 ~t~al~~~~~~l~~-------~~g~~vl~~~~-~h~s~~~~~~~~------~~~G~---~v~~v~~~~~~~--~~~l~~~ 172 (508)
+++|+..++..... ....+||.... -|.......... +..+. .+..++...... .+..
T Consensus 120 GseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--- 196 (456)
T PRK07480 120 GSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMT--- 196 (456)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcccccccCCC---
Confidence 99999887764321 12345666543 343333222110 00010 111222110000 0000
Q ss_pred cccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEE
Q 010538 173 LVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLI 248 (508)
Q Consensus 173 ~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~viv 248 (508)
....-...++.++ +.+.+ ...+++..|++..+....|.+.| ++.+.++|++ +|+++|+
T Consensus 197 --~~~~~~~~~~~l~--~~~~~--~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~------------~g~llI~ 258 (456)
T PRK07480 197 --PEEFGLAAARQLE--AKILE--LGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRK------------YDILLVA 258 (456)
T ss_pred --hHHHHHHHHHHHH--HHHHh--cCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHH------------cCCEEEE
Confidence 0000000023443 22211 11356888899888888899888 5566666665 9999999
Q ss_pred ecccc-CCCCC----CCCCCCCCcEEEEeccccccCC-CcceEEEEechhHhhhc--cc-cccCceEEecccchhhhhhc
Q 010538 249 DAAKG-CVTQP----PDLSKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLK--NT-YFSGGTVAASIADIDFVKRR 319 (508)
Q Consensus 249 D~a~~-~g~~~----~d~~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~--~~-~~g~~~~~~~~~~~~~~~~~ 319 (508)
|+++. +|..- .+......|+++++ |.+++= .-+|.++++++..+.+. +. +..+.
T Consensus 259 DEV~tGfGRtG~~~a~~~~gv~PDiv~~g--K~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~--------------- 321 (456)
T PRK07480 259 DEVICGFGRTGEWFGSQHFGIKPDLMTIA--KGLTSGYIPMGAVGVGDRVAEVLIEEGGEFNHGF--------------- 321 (456)
T ss_pred echhhCCCcCcchhhhhhcCCCCCeeeee--hhhccCCccceEEEEcHHHHHHHhcCCCCcccCC---------------
Confidence 99985 44321 11122247888776 966631 01788899988866542 11 00000
Q ss_pred cCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHHhcccCCCCCceE-EEecCCCCCcccCCCC
Q 010538 320 QGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHI-ASLGMYVRKVLLSLRHENGADVC-TIYGTYTSEVSYHDTG 397 (508)
Q Consensus 320 ~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~-~~l~~~l~~~L~~l~~~~~~~~~-~~~~~~~~~~~~~~~~ 397 (508)
..+-|....++..++++.+.+. .+.++. .++.++|.+.|+++.. .+.+ .+.+ .+
T Consensus 322 --------T~~gnpl~~Aaa~a~L~~l~~~---~l~~~~~~~~g~~l~~~l~~l~~---~~~i~~vrG----------~G 377 (456)
T PRK07480 322 --------TYSGHPVAAAVALANLRILRDE---GIVERVRDDTGPYLQKRLRELAD---HPLVGEVRG----------VG 377 (456)
T ss_pred --------CCCcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHhhc---CCCeeeEEe----------ec
Confidence 1123455666777788887664 455677 4777888777766420 1111 1111 26
Q ss_pred ceEEEEeeCCCC--Ccc-C----HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCC
Q 010538 398 SMVSFNLKRPDG--SWF-G----YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGK 470 (508)
Q Consensus 398 ~~v~~~~~~~~~--~~~-~----~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 470 (508)
.++.+.+..... ..+ + ...+.+.+.++||.+.+.
T Consensus 378 lm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~--------------------------------------- 418 (456)
T PRK07480 378 LVGAIELVKDKATRERFEAGGGVGTICRDHCFANGLIMRAV--------------------------------------- 418 (456)
T ss_pred ceEEEEEeccccccccCcchhhHHHHHHHHHHHCCcEEeec---------------------------------------
Confidence 677777742211 101 0 134566777899998541
Q ss_pred CCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 471 PTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 471 ~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
.+.+|+++.+-.|++||+++++.+.+.++-+
T Consensus 419 -~~~l~~~Ppl~it~~eid~~~~~l~~al~~~ 449 (456)
T PRK07480 419 -GDRMIISPPLVITHAEIDELVEKARKALDAT 449 (456)
T ss_pred -CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999999999887655
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.9e-10 Score=117.34 Aligned_cols=356 Identities=12% Similarity=0.072 Sum_probs=199.6
Q ss_pred CCCeeeeCCC-----CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChH
Q 010538 39 NGTVYLDHAG-----ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGAT 113 (508)
Q Consensus 39 ~~~iyld~~~-----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t 113 (508)
++.-|+|..+ .+--+|.+++++.+++. ... .....+ ..+...++.+++++++....+ .+.|++|++
T Consensus 70 dG~~ylD~~g~~~~~lGh~~p~v~~Ai~~ql~-~~~-~~~~~~-----~~~~~~~lae~L~~~~p~~~~--~v~f~~sGs 140 (459)
T PRK06082 70 DGKKYMDFHGNNVHQLGYGHPHVIEKVKEQMA-KLP-FSPRRF-----TNETAIECAEKLTEIAGGELN--RVLFAPGGT 140 (459)
T ss_pred CCCEEEEcccHhhcccCCCCHHHHHHHHHHHH-hCC-CccCcc-----CCHHHHHHHHHHHHhCCCCCC--EEEECCCcH
Confidence 6788999764 34458888888766543 221 111111 123455667778888764445 799999999
Q ss_pred HHHHHHHhhcC-CCCCCeEEEec-ccccchHHHHHHHHh------cC---CeEEEEccCCccC--ccccccccccccccc
Q 010538 114 AALKLVGEAFP-WSHQSSYMYTM-ENHNSVLGIREYALS------QG---AAAFAIDVEEAVD--NDGLSESLVTSTKIS 180 (508)
Q Consensus 114 ~al~~~~~~l~-~~~g~~vl~~~-~~h~s~~~~~~~~~~------~G---~~v~~v~~~~~~~--~~~l~~~~~~~~~~~ 180 (508)
+|+..++.... ..+...|++.. .-|............ .+ ..+..+|...... ..+. ...-.
T Consensus 141 eAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 214 (459)
T PRK06082 141 SAIGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDA------DGSDV 214 (459)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCCh------hHHHH
Confidence 99988776432 23345555553 344433333222100 00 1122233211000 0000 00000
Q ss_pred cchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC---HHHHHHHHcCCccccccCCCCCCCeEEEEeccccC-CC
Q 010538 181 LLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN---LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC-VT 256 (508)
Q Consensus 181 ~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~---i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~-g~ 256 (508)
..++.++ +.+++ .+++..|++..+.+..+.+.| ++++.++|++ +|+++|+|++++. |.
T Consensus 215 ~~~~~l~--~~i~~----~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~------------~g~llI~DEV~tG~GR 276 (459)
T PRK06082 215 HYADYLE--YVIEK----EGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDK------------HNVLLIIDEIPNGMGR 276 (459)
T ss_pred HHHHHHH--HHHhc----CCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHH------------cCCEEEEechhhCCCc
Confidence 0134455 44432 236788888878776433455 5666666666 9999999999873 22
Q ss_pred CC----CCCCCCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCC
Q 010538 257 QP----PDLSKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTA 331 (508)
Q Consensus 257 ~~----~d~~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 331 (508)
.- .+......|++++ .|.+++- .-+|.+++++++........ . ......
T Consensus 277 tG~~fa~e~~gv~PDiv~~--gKgl~gG~~P~~av~~~~~i~~~~~~~~----------------------~--~~T~~g 330 (459)
T PRK06082 277 TGEWFTHQAYGIEPDILCI--GKGLGGGLVPIAAMITKDKYNTAAQISL----------------------G--HYTHEK 330 (459)
T ss_pred cchhhHhHhhCCCCCEEEe--cccccCCCCcceEEEEcHHHHhhccCCC----------------------C--CCCCCc
Confidence 11 0111224798885 5977631 01688888887643221000 0 001123
Q ss_pred ChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCC-C
Q 010538 332 SFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDG-S 410 (508)
Q Consensus 332 ~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~ 410 (508)
|..+.++..++++.+.+. .+.++..++.++|.+.|+++.. ...++..-. -.+.++.+.+..... .
T Consensus 331 npl~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~-----~~~~i~~vr------G~Gl~~~ve~~~~~~~~ 396 (459)
T PRK06082 331 SPLGCAAALATIEVIEQE---GLLEKVKADSQFMRERLLEMKA-----KYPLIGDVR------GIGLLWGVELVTDRHTK 396 (459)
T ss_pred CHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHh-----hCCCeeeee------eccceeEEEEccCcccc
Confidence 455566667778877653 4678888999999999877521 111222211 126777777753111 1
Q ss_pred ccC---HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHH
Q 010538 411 WFG---YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFED 487 (508)
Q Consensus 411 ~~~---~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ee 487 (508)
..+ ...+...+.++|+.+.+. ..+.+|+++.+-.|++|
T Consensus 397 ~~~~~~~~~~~~~~~~~Gvl~~~~---------------------------------------~~~~i~~~Ppl~it~~e 437 (459)
T PRK06082 397 ERAYDEAEAVLYRCLNNGLSFKVS---------------------------------------QGNVIQLSPPLIITREE 437 (459)
T ss_pred CccHHHHHHHHHHHHhCCCEEEec---------------------------------------CCCEEEEeCCCccCHHH
Confidence 111 234566677899988652 14689999999999999
Q ss_pred HHHHHHhhhhhhhh-hhhcc
Q 010538 488 AKVNRCSSFDFVNF-SQFLN 506 (508)
Q Consensus 488 v~~l~~~~~~~~~~-~~~~~ 506 (508)
|+++++++.+.+.- .|-+|
T Consensus 438 id~~~~~l~~~l~~~~~~~~ 457 (459)
T PRK06082 438 LTQALAILEEAIAKICQDFN 457 (459)
T ss_pred HHHHHHHHHHHHHHHhhhcc
Confidence 99999999987643 44444
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1e-09 Score=116.65 Aligned_cols=364 Identities=13% Similarity=0.027 Sum_probs=201.5
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..+. +--+|.+++++.++.. .... ....+.. ......++-+++++++..+.+ .+.|++++
T Consensus 44 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~-~~~~-~~~~~~~---~~~~~~~lae~L~~~~p~~~~--~v~f~~sG 116 (459)
T PRK05965 44 SGHQLLDAFAGLWCVNVGYGQESIVEAAAEQMR-ELPY-ATGYFHF---GSEPAIRLAAKLAERAPGSLN--HVYFTLGG 116 (459)
T ss_pred CCCEEEECcccHHhccCCCCCHHHHHHHHHHHH-hcCC-ccccccc---CCHHHHHHHHHHHhhCCCCcC--EEEEeCCh
Confidence 78899998543 4458889888766543 2110 0000000 122234556667777654445 79999999
Q ss_pred HHHHHHHHhhcC-C------CCCCeEEEeccc-ccchHHHHHHHH------hcC---CeEEEEccCCccC--c-cccccc
Q 010538 113 TAALKLVGEAFP-W------SHQSSYMYTMEN-HNSVLGIREYAL------SQG---AAAFAIDVEEAVD--N-DGLSES 172 (508)
Q Consensus 113 t~al~~~~~~l~-~------~~g~~vl~~~~~-h~s~~~~~~~~~------~~G---~~v~~v~~~~~~~--~-~~l~~~ 172 (508)
++|+..++.... . ....+||..... |........... ..| ..+..+|...... . ++.
T Consensus 117 SEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 193 (459)
T PRK05965 117 SDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDP--- 193 (459)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCCh---
Confidence 999988776532 1 123456666544 433322222110 011 0112222210000 0 000
Q ss_pred cccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccc
Q 010538 173 LVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAK 252 (508)
Q Consensus 173 ~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~ 252 (508)
.....-.++.++ +.+.+. ..+++..|++..++...|.+.|.+..-+-+++ +|++||+++|+|+++
T Consensus 194 ---~~~~~~~~~~l~--~~i~~~--~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~--------lc~~~gillI~DEV~ 258 (459)
T PRK05965 194 ---QAIIAASVAALR--AKVAEL--GADNVAAFFCEPIQGSGGVIVPPKGWLKAMRE--------ACRELGILFVADEVI 258 (459)
T ss_pred ---HHHHHHHHHHHH--HHHHhc--CCCceEEEEEeccccCCCCccCCHHHHHHHHH--------HHHHcCCEEEEechh
Confidence 000000123455 444211 12567888888888888988774433333333 444599999999998
Q ss_pred c-CCCCC--CCC--CCCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccc
Q 010538 253 G-CVTQP--PDL--SKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELF 326 (508)
Q Consensus 253 ~-~g~~~--~d~--~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 326 (508)
. +|..- .-. .....|+++++ |.+++- .-+|.+++++++.+.+.+.....+ ...
T Consensus 259 tGfGRtG~~~a~~~~gv~PDiv~~g--Kgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~-------------------~~~ 317 (459)
T PRK05965 259 TGFGRTGPLFACEAEGVVPDLMTVA--KGLTSGYVPMGAVLMSDHVYQGIADGAGAAA-------------------PVG 317 (459)
T ss_pred ccCccCchhhhHhhcCCCCCeEEec--hhhccCCcceeEEEEcHHHHHHHhccccccc-------------------ccc
Confidence 6 33221 111 12247999997 965521 128999999988765532100000 000
Q ss_pred cCCC--CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEe
Q 010538 327 EDGT--ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNL 404 (508)
Q Consensus 327 ~~gt--~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 404 (508)
..+| -|..+.++..++++.+.+ +++.++..++.++|.+.|+++.. .+ ++.+-. -++.++.+.+
T Consensus 318 h~~T~~gnpl~~Aaa~a~L~~l~~---~~l~~~~~~~g~~l~~~l~~l~~---~~---~v~~vr------G~Gl~~gie~ 382 (459)
T PRK05965 318 HGYTYSAHPVSAAVGLEVLRLYHE---GGLLANGQKAGPRFAAGLDALRA---HP---LVGDVR------GRGLLGALEL 382 (459)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHhhcc---CC---CEEEEe------ecceEEEEEE
Confidence 1112 344556666667887766 45678888999999999987620 12 122111 1266777776
Q ss_pred eCCCC--Ccc-----CHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEE
Q 010538 405 KRPDG--SWF-----GYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRV 477 (508)
Q Consensus 405 ~~~~~--~~~-----~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRi 477 (508)
..... ..+ -...+.+.+.++|+.+++. ....+|+
T Consensus 383 ~~~~~~~~~~~~~~~~~~~i~~~~~~~Gll~~~~---------------------------------------g~~~i~~ 423 (459)
T PRK05965 383 VADKATKTPFDAALDPADRIFDRAYANGLVFRAF---------------------------------------GDGVLGF 423 (459)
T ss_pred eccccccCCCCchhHHHHHHHHHHHhCCeEEEec---------------------------------------CCcEEEE
Confidence 42110 000 1234667778899998641 1357999
Q ss_pred ecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 478 SFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 478 s~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
.+.+-.|++|++++++.+.+.++.+
T Consensus 424 ~PpL~it~~ei~~~~~~l~~~l~~~ 448 (459)
T PRK05965 424 APALCCTEGEFDLIFERTRKTLDDV 448 (459)
T ss_pred ECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998877643
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.6e-10 Score=118.31 Aligned_cols=361 Identities=14% Similarity=0.111 Sum_probs=199.7
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCC-CCCCceEEEcCC
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA-SMKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~-~~~~~~i~~t~g 111 (508)
++..|+|..+ .+--+|.+.+++.+++..-.+....... ......++.++++++++. ..+ .+.|+++
T Consensus 40 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~-----~~~~~~~lae~L~~~~~~~~~~--~v~f~~s 112 (449)
T PRK07481 40 DGKKLLDGVGGLWNVNVGHNREEVKEAIVRQLDELEYYSTFDGT-----THPRAIELSYELIDMFAPEGMR--RVFFSSG 112 (449)
T ss_pred CCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhccceeccccc-----CCHHHHHHHHHHHHhcCCCCCC--EEEEcCc
Confidence 7888999743 3455788888876654321110010000 122334456667777642 234 7999999
Q ss_pred hHHHHHHHHhhcCC-------CCCCeEEEecccccc-hHHHHHHHHh------cC---CeEEEEccCCccC--cc--ccc
Q 010538 112 ATAALKLVGEAFPW-------SHQSSYMYTMENHNS-VLGIREYALS------QG---AAAFAIDVEEAVD--ND--GLS 170 (508)
Q Consensus 112 ~t~al~~~~~~l~~-------~~g~~vl~~~~~h~s-~~~~~~~~~~------~G---~~v~~v~~~~~~~--~~--~l~ 170 (508)
+++|+..++..... ....+|+.....|-. .......... .+ ..+..++...... .+ +.+
T Consensus 113 GsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~ 192 (449)
T PRK07481 113 GSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPE 192 (449)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccccccCCCCHH
Confidence 99999887764321 123556666544333 3222211100 00 1122222211000 00 000
Q ss_pred cccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEE
Q 010538 171 ESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMV 246 (508)
Q Consensus 171 ~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~v 246 (508)
+ +... ..+.++ +.+.. ...+++..|++..+....|.+.| ++.+.++|++ +|+++
T Consensus 193 ~---~~~~---~~~~le--~~i~~--~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~------------~g~ll 250 (449)
T PRK07481 193 E---LARI---CARLLE--REIAF--QGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDR------------HGILL 250 (449)
T ss_pred H---HHHH---HHHHHH--HHHHh--cCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHH------------cCCEE
Confidence 0 0000 012233 22210 11356899999889888898877 5566666665 99999
Q ss_pred EEecccc-CCCCC----CCCCCCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhcc
Q 010538 247 LIDAAKG-CVTQP----PDLSKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQ 320 (508)
Q Consensus 247 ivD~a~~-~g~~~----~d~~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~ 320 (508)
|.|+++. +|..- .+......|+++.+ |.+++- .-+|.++++++..+.+.+.....
T Consensus 251 I~DEV~tGfGRtG~~~a~~~~gv~PDiv~~g--Kgl~gG~~Pi~av~~~~~i~~~~~~~~~~~----------------- 311 (449)
T PRK07481 251 IADEVVTGFGRTGSWFGSRGWGVKPDIMCLA--KGITSGYVPLGATMVNARIADAFEANADFG----------------- 311 (449)
T ss_pred EEeehhhCcCcCchhhHhhhcCCCCCEEEEe--ecccCCCcCceEEEEcHHHHHHHhccCccc-----------------
Confidence 9999976 33221 11222347999887 966631 01799999988876554321000
Q ss_pred CccccccCCC--CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCc
Q 010538 321 GVEELFEDGT--ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGS 398 (508)
Q Consensus 321 ~~~~~~~~gt--~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (508)
......+| -|....++..++++.+.+ +++.++.+++.++|.+.|+++.. ...++..-. -.+.
T Consensus 312 --~~~~h~~T~~gnpl~~aaa~a~L~~l~~---~~l~~~~~~~g~~l~~~L~~l~~-----~~~~i~~vr------G~Gl 375 (449)
T PRK07481 312 --GAIMHGYTYSGHPVACAAALATLDIVVR---EDLPANAAKRGAYLLEGLQPLKE-----RFELVGDVR------GKGL 375 (449)
T ss_pred --cccccCCCCCCCHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHhh-----cCCCeEEEe------ecce
Confidence 00011223 245556666667777655 46778888899999988877621 111222111 1266
Q ss_pred eEEEEeeCCC--CCccC-----HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCC
Q 010538 399 MVSFNLKRPD--GSWFG-----YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKP 471 (508)
Q Consensus 399 ~v~~~~~~~~--~~~~~-----~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 471 (508)
++.+.+.... ....+ ...+.+.+.++||.+.+.
T Consensus 376 m~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~---------------------------------------- 415 (449)
T PRK07481 376 MLALDLVADKATREPIDPSKGYANAVADVARENGVLVRPS---------------------------------------- 415 (449)
T ss_pred EEEEEecccccccCCCCchhHHHHHHHHHHHhCCeEEEec----------------------------------------
Confidence 7777764211 10011 134667777899998652
Q ss_pred CceEEEecCCCCCHHHHHHHHHhhhhhhhhhh
Q 010538 472 TGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 472 ~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~ 503 (508)
.+.+|+++.+-.|++|||++++.+.+.++.+.
T Consensus 416 g~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~ 447 (449)
T PRK07481 416 GTKIILSPPLVIQREDVDRIVDALDAGLSAVP 447 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 24589999998999999999999998886654
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-10 Score=121.32 Aligned_cols=349 Identities=13% Similarity=0.071 Sum_probs=190.5
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHH-hhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCC
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRD-FTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g 111 (508)
++..|+|..+. +--+|.+++++.++ ...... +... + ......++.+.+.+.+++++..+.+ .+.|++|
T Consensus 56 dG~~ylD~~sg~~~~~lGh~~p~i~~Ai~~q~~~~~l~-~~~~-~-~~~~~~~la~~l~~~l~~~~p~~~~--~v~f~~S 130 (464)
T TIGR00699 56 DGNRLLDLYSQISSIPIGYNNPALLKAAQSPEMATTLI-NRPA-L-GNFPSKDWAKILKEGILKVAPKGQD--QVWTGMS 130 (464)
T ss_pred CCCEEEEccCCHhhhcCCCCCHHHHHHHHHHHHHHhhc-cccc-C-CcHHHHHHHHHHHHhHHhhCCCCcC--EEEEeCC
Confidence 78899998664 55588898888663 222211 1111 1 1111223333333334555543335 7999999
Q ss_pred hHHHHHHHHhhcC-C-----C-------------------C---CCeEEEeccc-ccchHHHHHHHHh-----cC---Ce
Q 010538 112 ATAALKLVGEAFP-W-----S-------------------H---QSSYMYTMEN-HNSVLGIREYALS-----QG---AA 154 (508)
Q Consensus 112 ~t~al~~~~~~l~-~-----~-------------------~---g~~vl~~~~~-h~s~~~~~~~~~~-----~G---~~ 154 (508)
+++|+..++.... . + . ...||..... |............ .+ ..
T Consensus 131 GsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~ 210 (464)
T TIGR00699 131 GSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFD 210 (464)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCC
Confidence 9999988766441 0 0 0 1256666544 4334433322110 01 11
Q ss_pred EEEEccCCc-cCccc-cccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHc
Q 010538 155 AFAIDVEEA-VDNDG-LSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKK 228 (508)
Q Consensus 155 v~~v~~~~~-~~~~~-l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~ 228 (508)
+..+|.... ..... .++ ....-..+++.++ +.+++ ..+++..|++..+....|.+.| ++.+.++|+
T Consensus 211 ~~~~p~p~~~~~~~~~~~~---~~~~~~~~l~~l~--~~l~~---~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~ 282 (464)
T TIGR00699 211 WPQAPFPSLKYPLEEHVKE---NAKEEQRCLEEVE--DLIKK---WHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITK 282 (464)
T ss_pred ceecCCCCccccccccccc---chhHHHHHHHHHH--HHHHh---cCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHH
Confidence 112222110 00000 000 0000001344555 44432 2356899999999999999998 777777777
Q ss_pred CCccccccCCCCCCCeEEEEecccc-CCCCC-------CCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhcccc
Q 010538 229 NPERILEISPFSKGRWMVLIDAAKG-CVTQP-------PDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTY 300 (508)
Q Consensus 229 ~~~~~~~~~~~~~~g~~vivD~a~~-~g~~~-------~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~ 300 (508)
+ +|+++|+|+++. +|..- .++. ...|+++++ |.++ |.|+++.+ +.+....+..
T Consensus 283 ~------------~g~lLI~DEV~tGfGrtG~~fa~e~~gv~-~~PDi~t~g--K~lg---~gG~~~~~-~~~~~~~~~~ 343 (464)
T TIGR00699 283 K------------HNVAFIVDEVQTGVGATGKFWAHEHWNLD-DPPDMVTFS--KKFQ---TAGYFFHD-PAFRPNKPYR 343 (464)
T ss_pred H------------cCCEEEEeeeeeCCCCCcchhHHHhcCCC-CCCCEEEeh--hhhc---cCCccccc-hhccCCCCcc
Confidence 6 999999999985 33211 1222 137887775 9875 22443332 2211001110
Q ss_pred ccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCce
Q 010538 301 FSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADV 380 (508)
Q Consensus 301 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~ 380 (508)
. ......|....++..++++.+.+ +++.++..++.++|.+.|+++.. .
T Consensus 344 ~------------------------~~T~~gnp~~~aaa~a~L~~l~~---~~l~~~~~~~g~~l~~~L~~l~~-----~ 391 (464)
T TIGR00699 344 Q------------------------FNTWMGDPSRALILREIIQEIKR---KDLLENVAHVGDYLYTGLEDLQK-----K 391 (464)
T ss_pred c------------------------ccCCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHH-----h
Confidence 0 01122445556666677887765 35667777888888888876520 1
Q ss_pred EE-EecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCc
Q 010538 381 CT-IYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHV 459 (508)
Q Consensus 381 ~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 459 (508)
.. ++..... .-.+.++.+.+++.. ....+.+.+.++|+.+...
T Consensus 392 ~~~~i~~vRg----~G~Glm~gie~~~~~----~~~~i~~~~~~~Gvl~~~~---------------------------- 435 (464)
T TIGR00699 392 YPEFIQNLRG----KGRGTFIAWDTPDEA----KRDKLLKKARNNGVNIGGC---------------------------- 435 (464)
T ss_pred CCCceeeecc----cCeEEEEEEecCCHH----HHHHHHHHHHHCCcEEecC----------------------------
Confidence 11 1111100 012788888875321 1235778888899998641
Q ss_pred cCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 460 CWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 460 ~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
..+.|||++.+-.|++||+.+++++.+.
T Consensus 436 -----------g~~~ir~~Ppl~it~~eid~~~~~l~~~ 463 (464)
T TIGR00699 436 -----------GVKAIRLRPMLVFQKHHADIFLEIISKI 463 (464)
T ss_pred -----------CCCeEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 1368999999999999999999998764
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-09 Score=115.97 Aligned_cols=365 Identities=13% Similarity=0.067 Sum_probs=199.6
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+ .+--+|.+.+++.+++..-.+..+ ..+ ..+...++.+++++++....+ .+.|++++
T Consensus 29 dG~~ylD~~~g~~~~~lGh~hp~v~~Ai~~ql~~~~~~~~-~~~-----~~~~~~~lae~L~~~~p~~~~--~v~f~~sG 100 (447)
T PRK06917 29 NGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEEVSFVYR-SQF-----TSEPAEKLAKKLSDLSPGDLN--WSFFVNSG 100 (447)
T ss_pred CCCEEEECchhHHhccCCCCCHHHHHHHHHHHhhCcCccc-ccc-----CCHHHHHHHHHHHHhCCCCCC--EEEEeCCh
Confidence 7788999743 355588898887665532111101 011 123345566777777754445 79999999
Q ss_pred HHHHHHHHhhcC-------CCCCCeEEEecccccc-hHHHHHHHHhcCC---------eEEEEccCCccC--cccccccc
Q 010538 113 TAALKLVGEAFP-------WSHQSSYMYTMENHNS-VLGIREYALSQGA---------AAFAIDVEEAVD--NDGLSESL 173 (508)
Q Consensus 113 t~al~~~~~~l~-------~~~g~~vl~~~~~h~s-~~~~~~~~~~~G~---------~v~~v~~~~~~~--~~~l~~~~ 173 (508)
|+|+..++.... ..+..+|+.....|-. ...........+. .+..+|...... .+..
T Consensus 101 sEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~---- 176 (447)
T PRK06917 101 SEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKV---- 176 (447)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCC----
Confidence 999988776541 1223567666544433 3333321110000 112222110000 0000
Q ss_pred ccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCC-ccccC----HHHHHHHHcCCccccccCCCCCCCeEEEE
Q 010538 174 VTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFS-GSRFN----LDLINIMKKNPERILEISPFSKGRWMVLI 248 (508)
Q Consensus 174 ~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~t-G~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~viv 248 (508)
....-..+++.++ ..+++. ..+++..|++.-+.... |.+.| ++.+.++|+ ++|+++|+
T Consensus 177 -~~~~~~~~~~~le--~~i~~~--~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~------------~~g~llI~ 239 (447)
T PRK06917 177 -YPTCQLACATELE--TAIERI--GAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICD------------HYDILFIA 239 (447)
T ss_pred -hHHHHHHHHHHHH--HHHHhc--CCCceEEEEEeccccCcCceecCCHHHHHHHHHHHH------------HcCCEEEE
Confidence 0000001234455 444321 12467888887766543 56666 334555555 49999999
Q ss_pred ecccc-CCCCCC----CCCCCCCcEEEEeccccccCCC-cceEEEEechhHhhhccccccCceEEecccchhhhhhccCc
Q 010538 249 DAAKG-CVTQPP----DLSKYPVDFVVMSFYKIFGYPT-GLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGV 322 (508)
Q Consensus 249 D~a~~-~g~~~~----d~~~~~~D~~~~S~~K~~g~P~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~ 322 (508)
|+++. +|..-. +......|+++++ |.+++=. -+|.+.+++++.+.+.+.. +
T Consensus 240 DEv~tGfGRtG~~~a~~~~gv~PDi~~~g--K~l~~G~~Pi~a~~~~~~i~~~~~~~~---~------------------ 296 (447)
T PRK06917 240 DEVMTGLGRTGAMFAMEHWGVEPDIMTLG--KGLGAGYTPIAATVVSDRVMEPILRGS---R------------------ 296 (447)
T ss_pred echhhCcCcccchhhHHhcCCCCCEEEee--ehhccCCcceEEEEEcHHHHHHHhccC---c------------------
Confidence 99986 222111 1112247888775 9766311 1788888988866543210 0
Q ss_pred cccccCCC--CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceE
Q 010538 323 EELFEDGT--ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMV 400 (508)
Q Consensus 323 ~~~~~~gt--~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 400 (508)
..+..+| .|...+++..++++.+.+. ++.++..++.++|.+.|+++.. ...++..-. -.+.++
T Consensus 297 -~~~~~~T~~gnpl~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~l~~-----~~~~i~~vr------G~Gl~~ 361 (447)
T PRK06917 297 -SIMSGHTLSANPLSAATALAVLEYMEKH---NLPEKAAEKGEYLIKGLQKVQQ-----QSTIIGDVR------GKGLLI 361 (447)
T ss_pred -ccccccCCCCCHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHh-----cCCCEEEEe------ecceEE
Confidence 0011122 3455666777778877653 5678888899999988877621 111121111 126677
Q ss_pred EEEeeCCCC--Ccc-----CHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCc
Q 010538 401 SFNLKRPDG--SWF-----GYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTG 473 (508)
Q Consensus 401 ~~~~~~~~~--~~~-----~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (508)
.+.+...+. ... -...+.+.+.++||.+.+...... +...+
T Consensus 362 ~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~--------------------------------g~~~~ 409 (447)
T PRK06917 362 GVEFVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQD--------------------------------GKEGD 409 (447)
T ss_pred EEEEeccCCcCCCCcchhHHHHHHHHHHHhCCcEEEecccccC--------------------------------CCCCC
Confidence 777642110 000 023466777889999875311000 01246
Q ss_pred eEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 474 AIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 474 ~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
.+|+++.+-.|++||+++++++.+.++.+
T Consensus 410 ~i~l~Ppl~it~~eid~~~~~l~~~l~~~ 438 (447)
T PRK06917 410 AVIIAPPMTITYSELDELLSIFAKSVEEM 438 (447)
T ss_pred EEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999887653
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.9e-10 Score=117.41 Aligned_cols=346 Identities=11% Similarity=0.083 Sum_probs=193.9
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+. +--+|.+++++.++.. . ......... ......++-+++++++...-+ .+.|++++
T Consensus 43 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~~~~-~-~~~~~~~~~----~~~~~~~la~~l~~~~~~~~~--~v~f~~sG 114 (427)
T TIGR00508 43 DGRRLIDGMSSWWAAIHGYNHPRLNAAAQKQID-K-MSHVMFGGF----THKPAIELCQKLVKMTPNALD--CVFLADSG 114 (427)
T ss_pred CCCEEEEccchHHHhcCCCCCHHHHHHHHHHHH-h-cCCcccccc----CCHHHHHHHHHHHhhCCCCCC--EEEEeCCc
Confidence 67789997542 4558888888766442 2 111111101 112234455667777654445 89999999
Q ss_pred HHHHHHHHhhcC-C------CCCCeEEEeccc-ccchHHHHHHHHh--------cC--CeEEEEccCCccCccccccccc
Q 010538 113 TAALKLVGEAFP-W------SHQSSYMYTMEN-HNSVLGIREYALS--------QG--AAAFAIDVEEAVDNDGLSESLV 174 (508)
Q Consensus 113 t~al~~~~~~l~-~------~~g~~vl~~~~~-h~s~~~~~~~~~~--------~G--~~v~~v~~~~~~~~~~l~~~~~ 174 (508)
|+|+..++.... . .+...||..... |............ .+ ..+..+|.........
T Consensus 115 seA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~------ 188 (427)
T TIGR00508 115 SVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQNRFDEE------ 188 (427)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCCccccch------
Confidence 999887766432 1 123456655543 3333322221100 00 0011111100000000
Q ss_pred cccccccchhhhhcCCCCCCCCCCCCCceEEEEeCC-CCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEe
Q 010538 175 TSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSE-CNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLID 249 (508)
Q Consensus 175 ~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~-~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD 249 (508)
.-..+.++++ +.+.+ ..+++..|++..+ +...|.+.+ +++|.++|++ +|+++|+|
T Consensus 189 ---~~~~~~~~l~--~~l~~---~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~------------~~~llI~D 248 (427)
T TIGR00508 189 ---WNEEAITPLA--KLMEL---HSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQ------------YDILLIAD 248 (427)
T ss_pred ---hHHHHHHHHH--HHHHh---cCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHH------------cCCEEEEe
Confidence 0001344555 44422 1345778888875 555555443 4455555555 99999999
Q ss_pred cccc-CCCCC----CCCCCCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCcc
Q 010538 250 AAKG-CVTQP----PDLSKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 250 ~a~~-~g~~~----~d~~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
++|. +|... .+......|+++. .|.+++- .-++.++.++++.+.+.....+.
T Consensus 249 Ev~tG~Gr~G~~~~~~~~~v~pDi~~~--gK~l~gG~~p~~a~~~~~~~~~~~~~~~~~~-------------------- 306 (427)
T TIGR00508 249 EIATGFGRTGKLFACEHAGVVPDILCV--GKALTGGYMTLSATVTTDKVAQTISSGEAGC-------------------- 306 (427)
T ss_pred ccccCCCcCCccchhhhcCCCCCEEEe--chhhhcCcccceEEEEcHHHHHHHhcCCCCc--------------------
Confidence 9984 22211 1112235788875 6966521 12578888888766554310000
Q ss_pred ccccCC--CCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEE
Q 010538 324 ELFEDG--TASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVS 401 (508)
Q Consensus 324 ~~~~~g--t~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 401 (508)
....+ ..|...+++..++++.+.+. ++.++.+++.++|++.|+++.. .+.+ .... -.+.++.
T Consensus 307 -~~~~~T~~g~p~~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~L~~l~~---~~~i---~~vr------g~G~~~~ 370 (427)
T TIGR00508 307 -FMHGPTFMGNPLACAVAEASLAILLEG---EWQKQVSAIENQLKRELSPLRK---NPVV---KDVR------VLGAIGV 370 (427)
T ss_pred -cccCCCCCcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhhc---CCCE---EeEe------ccccEEE
Confidence 00011 13456677777788887653 4568889999999999987621 1111 1111 1277888
Q ss_pred EEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCC
Q 010538 402 FNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGY 481 (508)
Q Consensus 402 ~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~ 481 (508)
+.+.+.. ....+.+.|.++||.+.+. ...+|+++..
T Consensus 371 i~~~~~~----~~~~~~~~l~~~Gv~~~~~----------------------------------------~~~l~~~ppl 406 (427)
T TIGR00508 371 VEMYKPV----NVEELQKKFVEQGVWIRPF----------------------------------------GKLIYVMPPY 406 (427)
T ss_pred EEECCcc----CHHHHHHHHHHCCeEEEec----------------------------------------CCEEEEECCC
Confidence 8875421 2345888888999998541 2469999999
Q ss_pred CCCHHHHHHHHHhhhhhhh
Q 010538 482 MSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 482 ~~t~eev~~l~~~~~~~~~ 500 (508)
-+|.+||+++++++.+.+.
T Consensus 407 ~~t~~~id~~~~~l~~~l~ 425 (427)
T TIGR00508 407 IITTEQLQKLTAALIEALH 425 (427)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999988764
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.8e-10 Score=127.05 Aligned_cols=355 Identities=14% Similarity=0.086 Sum_probs=203.2
Q ss_pred CCCeeeeCCC----CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHH
Q 010538 39 NGTVYLDHAG----ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATA 114 (508)
Q Consensus 39 ~~~iyld~~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~ 114 (508)
++.-|+|..+ .|--+|.+++++.+++. ... ..+.+ ......+..+++++++....+ .+.|++++++
T Consensus 583 dG~~ylD~~~~~~~lGh~hp~v~~Ai~~q~~-~l~--~~~~~-----~~~~~~elae~L~~~~p~~~~--~v~f~~SGsE 652 (972)
T PRK06149 583 AGRSYLDMVNNVTVLGHGHPRLAAAAARQWS-LLN--TNSRF-----HYAAVAEFSERLAALAPDGLD--TVFLVNSGSE 652 (972)
T ss_pred CCCEEEECCCCccccCCCCHHHHHHHHHHHH-hcc--ccccc-----cCHHHHHHHHHHHHhCCCCcC--EEEEeCCchH
Confidence 5678888754 33347888888866543 221 11111 123445566778887744345 7999999999
Q ss_pred HHHHHHhhcC-CCCCCeEEEec-ccccchHHHHHHHHh----cC------CeEEEEccCCcc--Cccccccccccccccc
Q 010538 115 ALKLVGEAFP-WSHQSSYMYTM-ENHNSVLGIREYALS----QG------AAAFAIDVEEAV--DNDGLSESLVTSTKIS 180 (508)
Q Consensus 115 al~~~~~~l~-~~~g~~vl~~~-~~h~s~~~~~~~~~~----~G------~~v~~v~~~~~~--~~~~l~~~~~~~~~~~ 180 (508)
|+..++.... ..+...||+.. .-|............ .+ .-+..++..... ...+.+ ... .
T Consensus 653 A~e~AlklAr~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~---~~~-~-- 726 (972)
T PRK06149 653 ANDLAIRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGAD---SAA-D-- 726 (972)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcc---cHH-H--
Confidence 9998877321 23344555554 445433332221100 00 012223221110 010000 000 0
Q ss_pred cchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEeccc-cCC
Q 010538 181 LLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAK-GCV 255 (508)
Q Consensus 181 ~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~-~~g 255 (508)
..+.++ +.+++.....+++..|++..+....|.+.| ++++.++|++ +|+++|+|++| ++|
T Consensus 727 -~~~~~~--~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~------------~g~llI~DEV~tGfG 791 (972)
T PRK06149 727 -YVRDVV--AQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRA------------RGGVCIADEVQVGYG 791 (972)
T ss_pred -HHHHHH--HHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHH------------cCCEEEEEeehhcCC
Confidence 011211 111100112356788999888888899999 7788888887 99999999999 454
Q ss_pred CCCC---CC--CCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCC
Q 010538 256 TQPP---DL--SKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGT 330 (508)
Q Consensus 256 ~~~~---d~--~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt 330 (508)
..-- -+ .....|+++++ |.+|+-..+|++++++++.+.+.+. +. .+...+
T Consensus 792 RtG~~~~a~e~~gv~PDivt~g--K~lg~G~Pl~av~~~~~i~~~~~~~--~~---------------------~~sT~~ 846 (972)
T PRK06149 792 RLGHYFWGFEQQGVVPDIITMA--KGMGNGHPLGAVITRREIAEALEAE--GY---------------------FFSSTG 846 (972)
T ss_pred ccCccchhhhhcCCCCCEEEec--ccccCCeeeEEEEEcHHHHhhhccC--Cc---------------------ccCCCC
Confidence 4321 11 12247998665 9766312279999999887655431 00 000112
Q ss_pred CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCC-CC
Q 010538 331 ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRP-DG 409 (508)
Q Consensus 331 ~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 409 (508)
-|..+.++..++++.+.+ +++.++.+++.++|++.|+++.. ...+++.-.. .+.++.+.+... ..
T Consensus 847 gnP~~~aaala~L~~i~~---e~l~~~~~~~G~~l~~~L~~l~~-----~~~~i~~vrG------~Gl~~gvel~~~~~~ 912 (972)
T PRK06149 847 GSPVSCRIGMAVLDVLRE---EKLQENARRVGDHLKARLEALAD-----RHPLIGAVHG------MGLYLGVELVRDRQT 912 (972)
T ss_pred CCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHH-----hCCCeEEEee------cceEEEEEEecCccc
Confidence 345556666677887765 35678888888999888877521 1111222111 267777776421 10
Q ss_pred Ccc---CHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHH
Q 010538 410 SWF---GYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFE 486 (508)
Q Consensus 410 ~~~---~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~e 486 (508)
..- ....+.+.+.++||.+.+.. ...+.+||.+.+-.|++
T Consensus 913 ~~~~~~~~~~i~~~l~~~Gvl~~~~g-------------------------------------~~~~vl~~~Ppl~it~~ 955 (972)
T PRK06149 913 LEPATEETAAICDRLLELGVIMQPTG-------------------------------------DHLNILKIKPPLCLDRE 955 (972)
T ss_pred CCCChHHHHHHHHHHHhCCeEEeecC-------------------------------------CCCCEEEEECCCcCCHH
Confidence 000 12357778888999987521 01478999999999999
Q ss_pred HHHHHHHhhhhhhh
Q 010538 487 DAKVNRCSSFDFVN 500 (508)
Q Consensus 487 ev~~l~~~~~~~~~ 500 (508)
|++.+++.+.+.+.
T Consensus 956 ~id~~~~~l~~~l~ 969 (972)
T PRK06149 956 SADFFVDMLDRVLT 969 (972)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988765
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.6e-10 Score=118.61 Aligned_cols=364 Identities=12% Similarity=0.053 Sum_probs=200.6
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+ .+--+|.+++++.+++. .........+ ......++-+++++++....+ .+.|++++
T Consensus 54 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~-~l~~~~~~~~-----~~~~~~~lae~L~~~~p~~~~--~v~f~~SG 125 (460)
T PRK06916 54 NGNEYYDGVSSIWLNVHGHQVPELDEAIREQLN-KIAHSTLLGL-----ANVPSILLAEKLIEVVPEGLK--KVFYSDSG 125 (460)
T ss_pred CCCEEEEcchhHHHhhcCCCCHHHHHHHHHHHH-hCCCcccccc-----CCHHHHHHHHHHHHhCCCCCC--EEEEeCCc
Confidence 7888999744 25668889888766543 2211111011 122344566677777754445 79999999
Q ss_pred HHHHHHHHhhcCC-------CCCCeEEEeccc-ccchHHHHHHHHh------cC---CeEEEEccCCccCcccccccccc
Q 010538 113 TAALKLVGEAFPW-------SHQSSYMYTMEN-HNSVLGIREYALS------QG---AAAFAIDVEEAVDNDGLSESLVT 175 (508)
Q Consensus 113 t~al~~~~~~l~~-------~~g~~vl~~~~~-h~s~~~~~~~~~~------~G---~~v~~v~~~~~~~~~~l~~~~~~ 175 (508)
++|+..++..... .+..+||..... |............ ++ ..+..+|........ ... ..
T Consensus 126 seAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~-~~~--~~ 202 (460)
T PRK06916 126 ATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSP-YGN--DK 202 (460)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccc-cCC--Ch
Confidence 9999887764321 223566666543 3333322221100 00 112223321100000 000 00
Q ss_pred ccccccchhhhhcCCCCCCCCCCCCCceEEEEeC-CCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEecccc-
Q 010538 176 STKISLLPIQRRKGASFPERDPAGDAYNLFAFPS-ECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKG- 253 (508)
Q Consensus 176 ~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~-~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~- 253 (508)
......+++.++ +.+++ ..+++..|++.- +....|.+.|-++..+.+++ +|+++|+++|+|+++.
T Consensus 203 ~~~~~~~~~~l~--~~l~~---~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~--------lc~~~g~llI~DEV~TG 269 (460)
T PRK06916 203 AEIVKKHLEELE--ELLKE---KHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRN--------LCTKYNVLFITDEVATG 269 (460)
T ss_pred HHHHHHHHHHHH--HHHHh---CCCcEEEEEEeccccCCCCcccCCHHHHHHHHH--------HHHHcCCEEEeechhhC
Confidence 000011344455 44431 235678888877 57777887753322222222 4445999999999976
Q ss_pred CCCCC----CCCCCCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccC
Q 010538 254 CVTQP----PDLSKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFED 328 (508)
Q Consensus 254 ~g~~~----~d~~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (508)
+|..- .+......|+++++ |.+++- ..+|.+++++++.+.+.+..... ...+..
T Consensus 270 ~GRtG~~~a~~~~gv~PDiv~~g--K~l~gG~~Pi~av~~~~ei~~~~~~~~~~~-------------------~~~~~~ 328 (460)
T PRK06916 270 FGRTGKMFACEHENVTPDIMTAG--KGLTGGYLPIAITVTTDEIYNAFYGDYEEQ-------------------KTFFHG 328 (460)
T ss_pred CCcCchhhHHHhcCCCCCeeeee--hhhhcCccccceeeecHHHHHHhhcccccc-------------------CccccC
Confidence 33211 11112247998876 955521 12799999998866543211000 000111
Q ss_pred CC--CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeC
Q 010538 329 GT--ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKR 406 (508)
Q Consensus 329 gt--~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 406 (508)
+| -|...+++..++++.+.+. .+.+++.++.++|.+.|+++. ...++++-. -.+.++.+.+..
T Consensus 329 ~T~~gnpl~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~l~~l~------~~~~v~~vr------G~Glm~giel~~ 393 (460)
T PRK06916 329 HSYTGNPLGCAVALANLELYEKT---NLIEQVARKTEYVATQLEDLF------ALKHVGDIR------QLGLMVGIELVK 393 (460)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHhh------cCCCeEEee------cCCceeeEEeec
Confidence 22 2555566667778877653 467888999999999998762 111121111 126667776643
Q ss_pred CCC--Ccc----C-HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEec
Q 010538 407 PDG--SWF----G-YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSF 479 (508)
Q Consensus 407 ~~~--~~~----~-~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~ 479 (508)
... ..+ . ...+.+.+.++||.+.+. .+.+|+.+
T Consensus 394 ~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~----------------------------------------g~~l~~~P 433 (460)
T PRK06916 394 NKETKEPFEWTERVGVQVCKRSRELGMLTRPL----------------------------------------GNTIVFMP 433 (460)
T ss_pred ccccccCCCchhhHHHHHHHHHHHCCeEEEec----------------------------------------CCEEEEeC
Confidence 211 000 0 134777788899998651 35799999
Q ss_pred CCCCCHHHHHHHHHhhhhhhhhh
Q 010538 480 GYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 480 ~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
.+-.|++||+++++++.+.++-+
T Consensus 434 pl~it~~~id~~~~~l~~~l~~~ 456 (460)
T PRK06916 434 PLASTIDELDEMLRILYKAISDV 456 (460)
T ss_pred CcccCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999887654
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.4e-10 Score=113.89 Aligned_cols=355 Identities=14% Similarity=0.050 Sum_probs=196.1
Q ss_pred CCCeeeeCCC-CCC-----CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG-ATL-----YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~-~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|.|+.. .++ -+|.+.+++.+..... ...+..+. ..-.+-+.+.+.+..- + .|-|++++
T Consensus 51 DGn~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~~G--------~~fg~Pte-~Ei~~Aell~~~~p~~-e--~vrfvnSG 118 (432)
T COG0001 51 DGNEYIDYVLGWGPLILGHAHPAVVEAVQEQLERG--------LSFGAPTE-LEVELAELLIERVPSI-E--KVRFVNSG 118 (432)
T ss_pred CCCEeeehhccCcccccCCCCHHHHHHHHHHHHhc--------CCCCCCCH-HHHHHHHHHHHhcCcc-c--EEEEecch
Confidence 7788888854 332 3788888876654321 11111122 2233446677777653 3 79999999
Q ss_pred HHHHHHHHhhcC-CCCCCeEEEecccccc-hHHHHHHHHhcCCeEEEEccCCccCcccc-ccccccccccccchhhhhcC
Q 010538 113 TAALKLVGEAFP-WSHQSSYMYTMENHNS-VLGIREYALSQGAAAFAIDVEEAVDNDGL-SESLVTSTKISLLPIQRRKG 189 (508)
Q Consensus 113 t~al~~~~~~l~-~~~g~~vl~~~~~h~s-~~~~~~~~~~~G~~v~~v~~~~~~~~~~l-~~~~~~~~~~~~d~~~l~~~ 189 (508)
|+|.+.+++... ..+.++|+..+..|-. ...++--+. .|..-.-.|... +-..++ +..+.++ +. |++.++
T Consensus 119 TEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~ag-sg~~t~g~p~s~-Gvp~~~a~~ti~~~-yN--D~~al~-- 191 (432)
T COG0001 119 TEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAG-SGAATLGSPSSP-GVPADVAKHTLVLP-YN--DLEALE-- 191 (432)
T ss_pred hHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcC-cCcccCCCCCCC-CCChhhhccEEEec-CC--CHHHHH--
Confidence 999988765542 2445677666554433 333322211 111100001100 000000 0000000 00 466777
Q ss_pred CCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCC----CCCCCC
Q 010538 190 ASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPP----DLSKYP 265 (508)
Q Consensus 190 ~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~----d~~~~~ 265 (508)
+++++. .++...|.+.-+....|.+.|.++..+-.++ +|+++|+++|.|++...-..++ +.-...
T Consensus 192 ~~~~~~---g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~--------lt~e~G~lLI~DEViTGFR~~~gGaq~~~gi~ 260 (432)
T COG0001 192 EAFEEY---GDDIAAVIVEPVAGNMGVVPPEPGFLEGLRE--------LTEEHGALLIFDEVITGFRVALGGAQGYYGVE 260 (432)
T ss_pred HHHHHc---CCcEEEEEeccccCCCCCCCCCHHHHHHHHH--------HHHHcCcEEEEecchhhcccCCcccccccCcC
Confidence 666432 5678999998888889999996644444444 4445999999998865311111 111223
Q ss_pred CcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCC--ChhHHHHHHHHH
Q 010538 266 VDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTA--SFLSIASIRHGF 343 (508)
Q Consensus 266 ~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~--~~~~~~~l~~al 343 (508)
.|+.+.+ |..||---+|.+-.+++..+.+.|. ..-+..||. |..++++-.+++
T Consensus 261 PDlttlG--KiIGGGlP~ga~gGr~eiM~~~~p~-----------------------g~vyqaGT~sgnplamaAG~atl 315 (432)
T COG0001 261 PDLTTLG--KIIGGGLPIGAFGGRAEIMEQLAPL-----------------------GPVYQAGTLSGNPLAMAAGLATL 315 (432)
T ss_pred cchhhhh--hhhcCCcceeeeccHHHHHhhhCCC-----------------------CCccccCCCCCcHHHHHHHHHHH
Confidence 6777766 9666311289999999998876665 122344554 445566666777
Q ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCcc---------CH
Q 010538 344 NLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWF---------GY 414 (508)
Q Consensus 344 ~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------~~ 414 (508)
+.+.+. +...+++.++.++|++.|++.-... ++.+.... .+.++.+.+.+.+.... ..
T Consensus 316 ~~l~~~--~~~y~~l~~~~~~L~~gl~~~~~~~---g~~~~v~~--------~gsm~~i~F~~~~~~n~~da~~sd~~~~ 382 (432)
T COG0001 316 EELMTE--EGVYERLDALGERLAEGLRAAAERH---GIPLTVNR--------VGSMFGIFFTEEGVRNYADAKRSDVERF 382 (432)
T ss_pred HHHHhc--ccHHHHHHHHHHHHHHHHHHHHHHh---CCCeEEee--------ecceEEEEecCCCCCCHHHHHhhchHHH
Confidence 776552 2356777777777777776532111 22222221 25666666544211100 01
Q ss_pred HHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHh
Q 010538 415 REVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCS 494 (508)
Q Consensus 415 ~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~ 494 (508)
.++.+.|.++||.+.++.+ ...=+| .-+|++||++.+++
T Consensus 383 ~~~~~~~l~~GV~l~ps~~---------------------------------------ea~flS--~ahte~di~~~~~a 421 (432)
T COG0001 383 AKFFHHLLNRGVYLAPSQF---------------------------------------EAGFLS--TAHTEEDIDRTLEA 421 (432)
T ss_pred HHHHHHHHhCCcccCCccc---------------------------------------cceeee--cccCHHHHHHHHHH
Confidence 2344566778998876421 122333 34699999999999
Q ss_pred hhhhhhhh
Q 010538 495 SFDFVNFS 502 (508)
Q Consensus 495 ~~~~~~~~ 502 (508)
+.+.++-+
T Consensus 422 ~~~~~~~~ 429 (432)
T COG0001 422 ADEAFKEL 429 (432)
T ss_pred HHHHHHHh
Confidence 88766543
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.4e-11 Score=118.46 Aligned_cols=259 Identities=16% Similarity=0.159 Sum_probs=158.9
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKL 118 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~ 118 (508)
-+.+-.-+.+-+..++.+++++.... .. +-+-......+ ........+.+..+...++. .++++++.+.|+.+
T Consensus 26 ~G~v~~t~lG~s~~~~e~iea~~~~~-~~-~v~Le~~l~~g-~~~~R~~~~~~~~~~~~~ae----a~~ivnnn~aAVll 98 (395)
T COG1921 26 IGTVLMTNLGRSLYSPEAIEAMKEAM-RA-PVELETDLKTG-KRGARLTELAELLCGLTGAE----AAAIVNNNAAAVLL 98 (395)
T ss_pred hhhheeccCCCccCCHHHHHHHHHHh-cc-cceeeeecccc-hhhHHHHHHHHHHhcccchh----heeeECCcHHHHHH
Confidence 45666777778888999999875533 21 11111111111 11222223333333333333 56888888889999
Q ss_pred HHhhcCCCCCCeEEEec-----ccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCC
Q 010538 119 VGEAFPWSHQSSYMYTM-----ENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFP 193 (508)
Q Consensus 119 ~~~~l~~~~g~~vl~~~-----~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~ 193 (508)
+..++. + +.+++++. ..|+.+-..+ +..|++++++-..... ...+++ .+
T Consensus 99 ~~~al~-~-~~EvVis~g~lV~gg~~~v~d~~---~~aG~~l~EvG~tn~t-----------------~~~d~~--~A-- 152 (395)
T COG1921 99 TLNALA-E-GKEVVVSRGELVEGGAFRVPDII---RLAGAKLVEVGTTNRT-----------------HLKDYE--LA-- 152 (395)
T ss_pred HHhhhc-c-CCeEEEEccccccCCCCChhHHH---HHcCCEEEEecccCcC-----------------CHHHHH--HH--
Confidence 888883 3 44555553 2344444444 4459999888654332 245667 44
Q ss_pred CCCCCCCCceEEEEeCCCCC-CccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC-CCCCC---CCCCcE
Q 010538 194 ERDPAGDAYNLFAFPSECNF-SGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ-PPDLS---KYPVDF 268 (508)
Q Consensus 194 ~~~~~~~~t~lv~~~~~~n~-tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~-~~d~~---~~~~D~ 268 (508)
++++|+++.-.|.+|. --...+.+++.+++|+ +|+++++|.+.+.-.. ..++. ..|+|.
T Consensus 153 ----Ine~ta~llkV~s~~~~f~~~l~~~~l~~ia~~------------~~lpvivD~aSg~~v~~e~~l~~~la~GaDL 216 (395)
T COG1921 153 ----INENTALLLKVHSSNYGFTGMLSEEELVEIAHE------------KGLPVIVDLASGALVDKEPDLREALALGADL 216 (395)
T ss_pred ----hccCCeeEEEEeeccccccccccHHHHHHHHHH------------cCCCEEEecCCccccccccchhHHHhcCCCE
Confidence 4677787776666653 2234678889999998 9999999998865322 22333 448999
Q ss_pred EEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHh
Q 010538 269 VVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINS 348 (508)
Q Consensus 269 ~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~ 348 (508)
+++|++|++|||+ .|+++++++++++++..-. .+.++.+- ..++++.+|++.+..
T Consensus 217 V~~SgdKllgGPq-aGii~GkKelI~~lq~~~l---------------------~Ralrv~K---~tla~l~~aLe~y~~ 271 (395)
T COG1921 217 VSFSGDKLLGGPQ-AGIIVGKKELIEKLQSHPL---------------------KRALRVDK---ETLAALEAALELYLQ 271 (395)
T ss_pred EEEecchhcCCCc-cceEechHHHHHHHHhhhh---------------------hhhhhcCc---HhHHHHHHHHHHHcC
Confidence 9999999999998 5999999999988765411 23333333 347788889997655
Q ss_pred cChHHHHHHHHHHHHHHHHHHhc
Q 010538 349 LTVPAICRHIASLGMYVRKVLLS 371 (508)
Q Consensus 349 ~g~~~i~~~~~~l~~~l~~~L~~ 371 (508)
........+..++.....+.|.+
T Consensus 272 ~~~~~~~~~~~~~l~~~~~~l~~ 294 (395)
T COG1921 272 PEILGERLRTLRLLTQPAEALLA 294 (395)
T ss_pred chhhhhhhHHHHhhccHHHHHHH
Confidence 32223333444444444455544
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.1e-10 Score=124.52 Aligned_cols=338 Identities=11% Similarity=0.031 Sum_probs=209.9
Q ss_pred eeeeCCCCCCCCHHHH-HHHHH--HhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHH
Q 010538 42 VYLDHAGATLYSELQM-EAIFR--DFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKL 118 (508)
Q Consensus 42 iyld~~~~~~~~~~~~-~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~ 118 (508)
.|+..+...-.-|.++ ..+++ .|++.+ .|... ..+...-+.+-....+++++.|.+.. +-.+-.++|.+-..
T Consensus 82 ~fiG~G~y~~~~P~vi~~~i~~~~~~yTaY--TPYQp-EisQG~Lqal~e~Qtmi~~LtGm~va--NASl~D~atA~aEA 156 (954)
T PRK12566 82 SLIGMGYHGTVTPTVILRNVLENPGWYTAY--TPYQP-EIAQGRLEALLNFQQMTIDLTGLDLA--NASLLDEATAAAEA 156 (954)
T ss_pred ccccccccCCcCcHHHHHHHHhCchhhhcC--CCCCc-hhhhHHHHHHHHHHHHHHHHhCchhh--hhhhccchhHHHHH
Confidence 4555555555556666 44433 111111 12211 12333455566788899999998755 44555666654443
Q ss_pred HHhhcCCC--CCCeEEEecccccchHHHHH-HHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCC
Q 010538 119 VGEAFPWS--HQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPER 195 (508)
Q Consensus 119 ~~~~l~~~--~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~ 195 (508)
+..+.... ...+|+++..-||.+...++ +++..|++++.-+ + + +.+
T Consensus 157 ~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~~~------~--------------------~--~~~--- 205 (954)
T PRK12566 157 MALAKRVAKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVVDA------V--------------------D--NLA--- 205 (954)
T ss_pred HHHHHHHhhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEEcc------h--------------------h--hcC---
Confidence 33333222 25689999999999887666 4566788877511 1 1 111
Q ss_pred CCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccc--cCCCCCCCCCCCCCcEEEEec
Q 010538 196 DPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAK--GCVTQPPDLSKYPVDFVVMSF 273 (508)
Q Consensus 196 ~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~--~~g~~~~d~~~~~~D~~~~S~ 273 (508)
++++..|++..+ |..|.+.|+++|.+++|+ +|++++ +++. +.+.. -...++|+|++++++
T Consensus 206 ---~~~~~~v~vq~P-~~~G~i~d~~~i~~~~h~------------~gal~~-~~~d~laL~ll-~~Pge~GADI~vG~~ 267 (954)
T PRK12566 206 ---AHAVFGALLQYP-DTHGEIRDLRPLIDQLHG------------QQALAC-VAADLLSLLVL-TPPGELGADVVLGST 267 (954)
T ss_pred ---CCCEEEEEEECC-CCceEEccHHHHHHHHHH------------cCCEEE-EEeCHHHHhCC-CChhhcCCcEEeeCC
Confidence 235778888876 568999999999999998 788755 4332 22222 224678999999977
Q ss_pred cc-----cccCCCcceEEEEechhHhhhccccccCceEEecccchhhhh--hccCccccccCCCCChhH---HHHHHHH-
Q 010538 274 YK-----IFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVK--RRQGVEELFEDGTASFLS---IASIRHG- 342 (508)
Q Consensus 274 ~K-----~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~gt~~~~~---~~~l~~a- 342 (508)
+- .||||. .|++-+++++..++.-.+.|-.. .......|.. ....+.-|++-.|.|+-. +.++.++
T Consensus 268 Q~fGvp~~~GGP~-ag~~a~~~~~~R~~PGRivG~s~--D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~ 344 (954)
T PRK12566 268 QRFGVPMGYGGPH-AAYFACRDDYKRAMPGRIIGVSR--DARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGF 344 (954)
T ss_pred CcCCCCCCCCCCC-eeeeeehHHHHhhCCCCccceee--cCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 64 466663 79999999876655544444211 1111111111 112234566778888742 3333333
Q ss_pred -HHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHH
Q 010538 343 -FNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLA 421 (508)
Q Consensus 343 -l~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L 421 (508)
+-++...|+.++.+++..++.+|.+.|.+. |+++..+. + -.-+.+++.. + ..++.+..
T Consensus 345 Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~~-------g~~~~~~~--f------F~~~~v~~~~-~-----~~~~~~~a 403 (954)
T PRK12566 345 YAVYHGPEGLKRIAQRVHRLTAILAAGLEAK-------GIKRLNRH--F------FDTLTLEVGG-A-----QAAIIESA 403 (954)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHhc-------CCccccCC--c------cceEEEEccC-C-----HHHHHHHH
Confidence 234456689999999999999999999885 78776542 1 2344444421 1 23477777
Q ss_pred hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhh
Q 010538 422 SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 422 ~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~ 496 (508)
.+.||-++.- .++.+.||+.--+|.+|++.++.++.
T Consensus 404 ~~~~~n~r~~---------------------------------------~~~~~~~s~de~~~~~~~~~~~~~f~ 439 (954)
T PRK12566 404 EAARINLRIL---------------------------------------GRGRLGVSLDETCDEATVARLFDIFL 439 (954)
T ss_pred HHCCCeeEEe---------------------------------------CCCeEEEEeCCCCCHHHHHHHHHHhc
Confidence 7889988752 14679999999999999999998873
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-09 Score=115.36 Aligned_cols=366 Identities=11% Similarity=0.052 Sum_probs=193.1
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceE-EEcCC
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKC-IFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i-~~t~g 111 (508)
++.-|+|..+ .+--+|.+++++.++........+ .+ .......++-+++++++......+.+ .++++
T Consensus 37 dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~--~~----~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~s 110 (442)
T TIGR00709 37 EGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQSGLPLHT--LD----LTTPLKDAFIEALLNIIPKRKMDYKLQFPGPS 110 (442)
T ss_pred CCCEEEEccccHhhhcCCCCCHHHHHHHHHHHHhccCccc--cc----cCcHHHHHHHHHHHHhCCCcCCCccEEEeCCC
Confidence 7788999743 355688898888665432111111 10 11233445556777776432100144 44689
Q ss_pred hHHHHHHHHhhcC-CCCCCeEEEecccccch-HHHHHHHH----hcC-----CeEEEEccCCccCccccccccccccccc
Q 010538 112 ATAALKLVGEAFP-WSHQSSYMYTMENHNSV-LGIREYAL----SQG-----AAAFAIDVEEAVDNDGLSESLVTSTKIS 180 (508)
Q Consensus 112 ~t~al~~~~~~l~-~~~g~~vl~~~~~h~s~-~~~~~~~~----~~G-----~~v~~v~~~~~~~~~~l~~~~~~~~~~~ 180 (508)
+++|+..++.... ..+...|++....|-.. ........ +.+ ..+..+|........ ... .......
T Consensus 111 GsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~ 187 (442)
T TIGR00709 111 GADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCP-FGI--GGEAGSN 187 (442)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCcccccc-ccC--CchhHHH
Confidence 9999988776432 33455677665444333 33322211 011 112333332111000 000 0000000
Q ss_pred cchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC-HHHHHHHHcCCccccccCCCCCCCeEEEEecccc-CCCCC
Q 010538 181 LLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN-LDLINIMKKNPERILEISPFSKGRWMVLIDAAKG-CVTQP 258 (508)
Q Consensus 181 ~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~-i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~-~g~~~ 258 (508)
...+.++ +.+++-....+++..|++..+.+..|.+.| .+.+.++.+ +|+++|+++|.|+++. +|..-
T Consensus 188 ~~~~~~~--~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~---------lc~~~g~llI~DEV~tGfGRtG 256 (442)
T TIGR00709 188 ASIEYFE--NFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIRE---------VTRKHDIKLILDEVQAGFGRSG 256 (442)
T ss_pred HHHHHHH--HHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHH---------HHHHcCCEEEEeccccCCCCCC
Confidence 0001112 111100011245677777777777787754 333333322 4445999999999986 33221
Q ss_pred --CCC--CCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChh
Q 010538 259 --PDL--SKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFL 334 (508)
Q Consensus 259 --~d~--~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 334 (508)
... .....|++++ .|.+++=.-+|+++++++ .+.+.+...+ ...+.|..
T Consensus 257 ~~~a~~~~gv~PDiv~~--gK~l~~G~Pigav~~~~~-~~~~~~~~~~------------------------~T~~gnpl 309 (442)
T TIGR00709 257 TMFAFEHAGIEPDFVVM--SKAVGGGLPLAVLLIAPE-FDAWQPAGHT------------------------GTFRGNQL 309 (442)
T ss_pred chhHHHHcCCCCcEEEE--cccccCCcccEEEEEchH-HhccCCCcCC------------------------CCCCcCHH
Confidence 111 1224688886 497663112899998877 3433221110 01124555
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCC-----
Q 010538 335 SIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDG----- 409 (508)
Q Consensus 335 ~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----- 409 (508)
..++..++++.+.+. .+.++..++.++|.+.|+++.. ...++..... .+.++.+.+.+...
T Consensus 310 a~aaa~a~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~-----~~~~v~~vrG------~Gl~~~ie~~~~~~~~~~~ 375 (442)
T TIGR00709 310 AMVTGTEALNYWKDD---NLAQNAQERGERITSFLDDMIK-----EHPCIGNVRG------RGLMQGIMIVDERQSKDAT 375 (442)
T ss_pred HHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHH-----hCCCeeeeec------cceEEEEEEccCccccccc
Confidence 566667788877653 5667888888999888876521 1112222111 26777777743211
Q ss_pred --Cc--c-CHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCC
Q 010538 410 --SW--F-GYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMST 484 (508)
Q Consensus 410 --~~--~-~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t 484 (508)
.. . -...+...+.++|+.+.+.. ...+.+|+.+..-.|
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~Gvl~~~~~-------------------------------------~~~~~l~~~Ppl~it 418 (442)
T TIGR00709 376 GAYPRDCELAAAIQGACFENGLLLETGG-------------------------------------REGEVFRLLCPITID 418 (442)
T ss_pred ccCCcchHHHHHHHHHHHHCCeEEeecC-------------------------------------CCCCEEEEECCCCCC
Confidence 00 0 02346667778999986521 014789999999999
Q ss_pred HHHHHHHHHhhhhhhhhh
Q 010538 485 FEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 485 ~eev~~l~~~~~~~~~~~ 502 (508)
++|++++++++.+.+..+
T Consensus 419 ~~ei~~~~~~l~~~l~~~ 436 (442)
T TIGR00709 419 QEECEEGISRFKQAVEEA 436 (442)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999877543
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.1e-09 Score=114.35 Aligned_cols=359 Identities=11% Similarity=0.079 Sum_probs=200.8
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..+ .+--+|.+.+++.++.. .........+ ......++.+++++++....+ .+.|++++
T Consensus 45 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~-~l~~~~~~~~-----~~~~~~~lae~L~~~~p~~~~--~v~f~~sG 116 (466)
T PRK07030 45 EGKRYLDAVSSWWVNVFGHANPRINQRIKDQVD-QLEHVILAGF-----SHEPVIELSERLVKITPPGLS--RCFYADNG 116 (466)
T ss_pred CCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHH-hcCCcccccc-----CCHHHHHHHHHHHHhCCCCcC--EEEEeCCc
Confidence 7888999743 35558888888766543 2110000011 123344556667776653445 79999999
Q ss_pred HHHHHHHHhhcC------C-CCCCeEEEecccc-cchHHHHHHHHh------cC---CeEEEEccCCccCc-cccccccc
Q 010538 113 TAALKLVGEAFP------W-SHQSSYMYTMENH-NSVLGIREYALS------QG---AAAFAIDVEEAVDN-DGLSESLV 174 (508)
Q Consensus 113 t~al~~~~~~l~------~-~~g~~vl~~~~~h-~s~~~~~~~~~~------~G---~~v~~v~~~~~~~~-~~l~~~~~ 174 (508)
++|+..++.... - .+..+||.....| .........-.. ++ ..+..+|....... ... .
T Consensus 117 sEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~----~ 192 (466)
T PRK07030 117 SSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGM----S 192 (466)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCC----C
Confidence 999988776531 1 2234566555433 333222221000 00 01222332110000 000 0
Q ss_pred cccccccchhhhhcCCCCCCCCCCCCCceEEEEeC-CCCCCccccCH----HHHHHHHcCCccccccCCCCCCCeEEEEe
Q 010538 175 TSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPS-ECNFSGSRFNL----DLINIMKKNPERILEISPFSKGRWMVLID 249 (508)
Q Consensus 175 ~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~-~~n~tG~~~~i----~~i~~l~~~~~~~~~~~~~~~~g~~vivD 249 (508)
....-..+++.++ +.+++ ..+++..|++.- ++...|.+.|. +.+.++|++ +|+++|+|
T Consensus 193 ~~~~~~~~l~~le--~~~~~---~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~------------~g~llI~D 255 (466)
T PRK07030 193 WEEHSRRMFAHME--QTLAE---HHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDR------------YGVHLIHD 255 (466)
T ss_pred HHHHHHHHHHHHH--HHHHh---CCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHH------------cCCEEEEe
Confidence 0000001234455 44432 235678888887 57777887773 455555555 99999999
Q ss_pred cccc-CCCCCC----CCCCCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCcc
Q 010538 250 AAKG-CVTQPP----DLSKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 250 ~a~~-~g~~~~----d~~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
+++. +|..-. +......|+++++ |.+++= .-+|.+++++++.+.+....... .
T Consensus 256 EV~TGfGRtG~~~a~~~~gv~PDiv~~g--Kgl~gG~~Pi~av~~~~ei~~~~~~~~~~~-------------------~ 314 (466)
T PRK07030 256 EIAVGFGRTGTMFACEQAGIRPDFLCLS--KALTGGYLPLAAVLTTDTVYQAFYDDYPTL-------------------R 314 (466)
T ss_pred ehhhCcCccccchHHHhcCCCCCEEeee--hhccCCcccceEEEecHHHHHHHhcccccc-------------------c
Confidence 9976 443211 1122347999997 965521 12799999998866543210000 0
Q ss_pred ccccCCC--CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEE
Q 010538 324 ELFEDGT--ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVS 401 (508)
Q Consensus 324 ~~~~~gt--~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 401 (508)
.....+| -|..+.++..++++.+.+ +++.++..++.++|.+.|+++.. .+.+.-+ .+ ++.++.
T Consensus 315 ~~~h~~T~~gnpla~aaa~a~L~~i~~---~~l~~~~~~~G~~l~~~L~~l~~---~~~v~~v--rG-------~Gl~~g 379 (466)
T PRK07030 315 AFLHSHSYTGNPLACAAALATLDIFEQ---DNVIENNRALARRMAEATAHLAD---HPHVAEV--RQ-------TGMILA 379 (466)
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHhc---CCCEEEe--Ee-------ceeEEE
Confidence 0011122 355667777778888766 45678888999999999877620 1222111 11 267777
Q ss_pred EEeeCCCCC--cc--C---HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCce
Q 010538 402 FNLKRPDGS--WF--G---YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGA 474 (508)
Q Consensus 402 ~~~~~~~~~--~~--~---~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (508)
+.+...... .+ . ...+.+.+.++|+.+.+. .+.
T Consensus 380 ie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~----------------------------------------g~~ 419 (466)
T PRK07030 380 IEMVQDKASKTPYPWQERRGLKVYQHALERGALLRPL----------------------------------------GSV 419 (466)
T ss_pred EEeccCccccccCcchhHHHHHHHHHHHHCCeEEEec----------------------------------------CCE
Confidence 776431110 00 0 134667778899998641 357
Q ss_pred EEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 475 IRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 475 iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
+|+.+.+-.|++||+.+++.+.+.++.+
T Consensus 420 i~~~Ppl~it~~eid~~~~~l~~al~~~ 447 (466)
T PRK07030 420 VYFLPPYVITPEQIDFLAEVASEGIDIA 447 (466)
T ss_pred EEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888765
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.9e-09 Score=111.01 Aligned_cols=314 Identities=11% Similarity=0.051 Sum_probs=186.0
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+ .+.-+|.+++++.+++ .+... ....+ ..+...++.++++++.+. + .+.|++++
T Consensus 22 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql-~~~~~-~~~~~-----~~~~~~~la~~l~~~~~~--~--~v~~~~SG 90 (364)
T PRK04013 22 QGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQL-EKLVV-AGPMF-----EHEEKEEMLEELSKWVNY--E--YVYMGNSG 90 (364)
T ss_pred CCCEEEEcccChhhccCCCCCHHHHHHHHHHH-HhcCC-ccCCc-----CCHHHHHHHHHHHhhcCC--C--EEEEeCch
Confidence 6788999733 4555788988876644 33211 11111 123455666778888754 4 68999999
Q ss_pred HHHHHHHHhhcCC-CCCCeEEEecccccc-hHHHHHHHHh----cCC-----eEEEEccCCccCcccccccccccccccc
Q 010538 113 TAALKLVGEAFPW-SHQSSYMYTMENHNS-VLGIREYALS----QGA-----AAFAIDVEEAVDNDGLSESLVTSTKISL 181 (508)
Q Consensus 113 t~al~~~~~~l~~-~~g~~vl~~~~~h~s-~~~~~~~~~~----~G~-----~v~~v~~~~~~~~~~l~~~~~~~~~~~~ 181 (508)
|+|+..++..... ++.++|++....|-+ .......... .+. .+..+|. +
T Consensus 91 seA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~--------------------~ 150 (364)
T PRK04013 91 TEAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPF--------------------N 150 (364)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecC--------------------C
Confidence 9999988876643 333677777654433 3222211000 011 1111111 1
Q ss_pred chhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEeccccC---
Q 010538 182 LPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC--- 254 (508)
Q Consensus 182 d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~--- 254 (508)
|++.++ +.+ .++++.|++.......|...+ ++++.++|++ +|+++|+|++++.
T Consensus 151 d~~~l~--~~i------~~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~------------~gillI~DEv~tG~Rt 210 (364)
T PRK04013 151 DVEAAK--EAI------TKETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTED------------VGALLIADEVQSGLRT 210 (364)
T ss_pred CHHHHH--HHh------cCCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHH------------cCCEEEEechhhcCCC
Confidence 355666 444 357899999988887777665 6677777776 9999999999873
Q ss_pred CCC-CCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCCh
Q 010538 255 VTQ-PPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASF 333 (508)
Q Consensus 255 g~~-~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~ 333 (508)
|.. ..+.-....|+++++ |.+++-.-+|.++.+++. .+...+ . ...-|.
T Consensus 211 G~~~a~~~~gv~PDiv~~g--K~lggG~P~~a~~~~~~~----~~~~~~-~-----------------------T~~gnp 260 (364)
T PRK04013 211 GKFLAIEHYKVEPDIVTMG--KGIGNGVPVSLTLTNFDV----ERGKHG-S-----------------------TFGGNP 260 (364)
T ss_pred CchhHHHhcCCCCCEEEec--ccccCCceeEEEEecccc----cCCCcC-C-----------------------CCCcCH
Confidence 210 011112347888886 966621116777776654 111100 0 112345
Q ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccC
Q 010538 334 LSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFG 413 (508)
Q Consensus 334 ~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 413 (508)
.+.++..+.++.+.+.++ .++.++. + ..+.. +. +.+-.. ++-++.+.+...
T Consensus 261 ~~~aaa~a~l~~i~~~~l---~~~~~~~---l-~~l~~-------~~---v~~vRG------~Gl~~gve~~~~------ 311 (364)
T PRK04013 261 LACKAVAVTLRILRRERL---VEKAGEK---F-IEIKG-------ER---VVTTRG------RGLMIGIVLKKP------ 311 (364)
T ss_pred HHHHHHHHHHHHHHhccH---HHHHHHH---H-HHhcc-------Cc---ceeeee------CcEEEEEEeCCc------
Confidence 566677778888877543 3333332 2 12211 11 122111 267777777532
Q ss_pred HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHH
Q 010538 414 YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRC 493 (508)
Q Consensus 414 ~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~ 493 (508)
...+.+.+.++|+.+.+. ..+.+|+.+..-.|++|++.+++
T Consensus 312 ~~~i~~~~~~~Gll~~~~---------------------------------------g~~vlr~~Ppl~it~~~i~~~~~ 352 (364)
T PRK04013 312 VGKYVEELQNRGYLVHTA---------------------------------------GQRVIRLLPPLIISKDTMEEAKS 352 (364)
T ss_pred HHHHHHHHHhCCcEEeeC---------------------------------------CCCEEEEeCCcccCHHHHHHHHH
Confidence 234778888899998641 13689999999999999999999
Q ss_pred hhhhhhhh
Q 010538 494 SSFDFVNF 501 (508)
Q Consensus 494 ~~~~~~~~ 501 (508)
.+.+.++-
T Consensus 353 ~l~~~l~~ 360 (364)
T PRK04013 353 AIEGVIND 360 (364)
T ss_pred HHHHHHHH
Confidence 99987754
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.29 E-value=5e-09 Score=111.01 Aligned_cols=350 Identities=11% Similarity=0.001 Sum_probs=192.6
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+ .+--+|.+++++.++.. ... ... . ......++.+.+.+.++ .+ .+.|++++
T Consensus 73 DG~~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~-~~~--~~~-~-----~~~~~~~lAe~l~~~~~--~~--~v~F~nSG 139 (453)
T PRK07046 73 DGHRYDDFCLGDTGAMFGHSPAPVARALAEQAR-RGL--TTM-L-----PSEDAAWVGEELARRFG--LP--YWQVATTA 139 (453)
T ss_pred CCCEEEEecccccccccCCCCHHHHHHHHHHHH-hCC--CCC-C-----CCHHHHHHHHHHHHHhC--CC--EEEEECCH
Confidence 6788999643 23446888888766543 211 111 1 12233445566767764 45 79999999
Q ss_pred HHHHHHHHhhcC-CCCCCeEEEecccccchH-HHHHHHHhcCCeEEEEccCCccCcccc-ccccccccccccchhhhhcC
Q 010538 113 TAALKLVGEAFP-WSHQSSYMYTMENHNSVL-GIREYALSQGAAAFAIDVEEAVDNDGL-SESLVTSTKISLLPIQRRKG 189 (508)
Q Consensus 113 t~al~~~~~~l~-~~~g~~vl~~~~~h~s~~-~~~~~~~~~G~~v~~v~~~~~~~~~~l-~~~~~~~~~~~~d~~~l~~~ 189 (508)
|+|...+++... ..+.+.|+.....|-... ...... ..+ ....-+.. .+....+ ...+.... .|++.++
T Consensus 140 tEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~-~~~-~~~~~~~~-~g~~~~~~~~~~~~~~---nd~~~l~-- 211 (453)
T PRK07046 140 TDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDL-VDG-RPVQRPGL-LGQVHDLTATTRVVEF---NDLAALE-- 211 (453)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhc-cCC-CCCCCCCC-CCCCccccCceEeeCC---CCHHHHH--
Confidence 999988776542 344566776654443332 111111 011 00000000 0000000 00000000 1467777
Q ss_pred CCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecccc----CCCCCCCC
Q 010538 190 ASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKG----CVTQPPDL 261 (508)
Q Consensus 190 ~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~----~g~~~~d~ 261 (508)
+.+. .+++..|++.-+....|.+.| ++++.++|++ +|+++|+|++++ .|... ..
T Consensus 212 ~~l~-----~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~------------~g~llI~DEV~tfr~g~Gg~~-~~ 273 (453)
T PRK07046 212 AALA-----DGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRR------------YGTLLVIDETHTISSGPGGYT-RA 273 (453)
T ss_pred HHhC-----CCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHH------------hCCEEEEEccccCccCCcchh-HH
Confidence 5552 246788898888888888888 4667777776 999999999985 33211 11
Q ss_pred CCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCC--ChhHHHHH
Q 010538 262 SKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTA--SFLSIASI 339 (508)
Q Consensus 262 ~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~--~~~~~~~l 339 (508)
-....|+++++ |.+|+=..+|.+.++++..+.+.+...... .......+|. |...+++.
T Consensus 274 ~gv~PDi~t~g--K~lggG~Pi~av~g~~~i~~~~~~~~~~~~-----------------~~~~~~~~T~~gnpl~~aa~ 334 (453)
T PRK07046 274 HGLEPDFLVVG--KPIAGGVPCAVYGFSAELAERAQAAKASAP-----------------PGHSGIGTTLSANALAMAAM 334 (453)
T ss_pred hCCCccceeeh--hhhcCCCcceeeeehHHHHHHHhhccccCC-----------------CCCceeCCCCcccHHHHHHH
Confidence 12247888765 966631228999999998776543210000 0001123343 45556666
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCc-------c
Q 010538 340 RHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSW-------F 412 (508)
Q Consensus 340 ~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~ 412 (508)
.++++.+.+ ++..++..++.++|.+.|+++....+. .+.+.+. +.++.+.+.+..... .
T Consensus 335 ~a~L~~l~~---~~~~~~~~~~g~~l~~~L~~l~~~~~~-~~~v~g~----------G~~~~i~~~~~~~~~~~~~~~~~ 400 (453)
T PRK07046 335 RATLAEVMT---EAAYAHMLALAARLAAGLRAVIARHGL-PWHVTRV----------GARVEFQFAPTPPRNGAEAAAAL 400 (453)
T ss_pred HHHHHHHhc---ccHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEEEe----------CcEEEEEEeCCCCCCHHHHhccc
Confidence 677777654 346788888888888888753210000 1122222 345555543211100 0
Q ss_pred C---HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHH
Q 010538 413 G---YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAK 489 (508)
Q Consensus 413 ~---~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~ 489 (508)
+ ...+...+.++||.+.+. .+.+++++. +|++||+
T Consensus 401 ~~~~~~~~~~~~~~~Gv~~~~~----------------------------------------~~~~~~~p~--~t~~did 438 (453)
T PRK07046 401 DPELEAALHLYLLNRGVLITPF----------------------------------------HNMMLVCPA--TTAADVD 438 (453)
T ss_pred CHHHHHHHHHHHHHCCCEEecc----------------------------------------cCcEEEeCC--CCHHHHH
Confidence 1 123555666789987641 245788875 7999999
Q ss_pred HHHHhhhhhhhhh
Q 010538 490 VNRCSSFDFVNFS 502 (508)
Q Consensus 490 ~l~~~~~~~~~~~ 502 (508)
++++++.+.++.+
T Consensus 439 ~~~~~~~~~l~~~ 451 (453)
T PRK07046 439 RLVAAFDACLGEL 451 (453)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877543
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=99.29 E-value=9e-10 Score=116.21 Aligned_cols=204 Identities=13% Similarity=0.074 Sum_probs=123.7
Q ss_pred CCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecccc-CCCCC----CCCCCCCCcEE
Q 010538 199 GDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKG-CVTQP----PDLSKYPVDFV 269 (508)
Q Consensus 199 ~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~-~g~~~----~d~~~~~~D~~ 269 (508)
.+++..|++..+....|.+.| +++|.++|++ +|+++|+|++|+ +|... .+......|++
T Consensus 216 ~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~------------~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~ 283 (431)
T TIGR03251 216 PHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDE------------HDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIV 283 (431)
T ss_pred CCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHH------------cCCEEEEecchhccCccchHHHHHhcCCCCCEE
Confidence 467899999989988898864 4456666665 999999999987 44431 12223358999
Q ss_pred EEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCC--CCChhHHHHHHHHHHHHH
Q 010538 270 VMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDG--TASFLSIASIRHGFNLIN 347 (508)
Q Consensus 270 ~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g--t~~~~~~~~l~~al~~~~ 347 (508)
+++ |.+ | ..|++ ..++..+..... +++.. ...+ +.|....++..++++.+.
T Consensus 284 ~~g--K~~--~-~~g~~-~~~~i~~~~~~~-~~~~~--------------------~~~~T~~gnpl~~aaa~a~L~~l~ 336 (431)
T TIGR03251 284 AFG--KKT--Q-VCGIM-AGRRVDEVADNV-FAVPS--------------------RLNSTWGGNLVDMVRATRILEIIE 336 (431)
T ss_pred Eec--ccC--c-cceEE-ecchHHHhhhhc-ccCcc--------------------ccCCCCCCCHHHHHHHHHHHHHHH
Confidence 875 754 3 23555 444321111111 11100 0112 235566777778888876
Q ss_pred hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCe
Q 010538 348 SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQ 427 (508)
Q Consensus 348 ~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~ 427 (508)
+.+ +.+++.++.++|.+.|+++.. ..++ ++.+... .+.++.+.+++.+ ....+.+.|.++||.
T Consensus 337 ~~~---l~~~~~~~g~~l~~~L~~l~~--~~~~--~i~~vrg------~G~~~~i~~~~~~----~~~~~~~~l~~~Gvl 399 (431)
T TIGR03251 337 EER---LVDNARVQGAHLLARLHELAA--EFPH--LVSNPRG------RGLMCAFDLPSTA----DRDEVIRQLYREGVL 399 (431)
T ss_pred hcC---HHHHHHHHHHHHHHHHHHHHH--hCcc--ceecccc------cceeEEEEeCCHH----HHHHHHHHHHhCCeE
Confidence 654 445556666666666654310 0011 2222211 2677788875421 123477888899999
Q ss_pred eccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhh
Q 010538 428 LRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFD 497 (508)
Q Consensus 428 v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~ 497 (508)
+.+.. .+.+|+++++.+|++|++++++++.+
T Consensus 400 ~~~~g---------------------------------------~~~lr~~P~l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 400 LLGCG---------------------------------------ERSIRFRPPLTVTREEIDAAIDAIRR 430 (431)
T ss_pred EecCC---------------------------------------CCeEEEECCccCCHHHHHHHHHHHHh
Confidence 86521 35799999999999999999998764
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4e-09 Score=111.55 Aligned_cols=367 Identities=14% Similarity=0.095 Sum_probs=199.4
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..+ .+--+|.+++++.+++..-.+..+. .+ ..+...++.+++++++....+ .+.|++++
T Consensus 28 dG~~ylD~~~g~~~~~lGh~~p~v~~av~~ql~~~~~~~~~-~~-----~~~~~~~lae~L~~~~p~~~~--~v~f~~sG 99 (443)
T PRK07483 28 TGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLAYAHTS-FF-----TTEPAEALADRLVAAAPAGLE--HVYFVSGG 99 (443)
T ss_pred CCCEEEEcCccHhhhccCCCCHHHHHHHHHHHHhccCcccc-cc-----CCHHHHHHHHHHHHhCCCCCC--EEEEcCCc
Confidence 7888999754 4555888888876654321111111 01 123344556677777653345 79999999
Q ss_pred HHHHHHHHhhcC-C------CCCCeEEEecc-cccchHHHHHHHH------hcC---CeEEEEccCC-ccCccccccccc
Q 010538 113 TAALKLVGEAFP-W------SHQSSYMYTME-NHNSVLGIREYAL------SQG---AAAFAIDVEE-AVDNDGLSESLV 174 (508)
Q Consensus 113 t~al~~~~~~l~-~------~~g~~vl~~~~-~h~s~~~~~~~~~------~~G---~~v~~v~~~~-~~~~~~l~~~~~ 174 (508)
++|+..++.... . ....+||.... -|........... ..+ ..+..+|... ..... .++ .
T Consensus 100 sEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~--~ 176 (443)
T PRK07483 100 SEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQR-AGE--S 176 (443)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccccc-cCC--C
Confidence 999988766432 1 22345666543 3433333322110 000 1112222110 00000 000 0
Q ss_pred cccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCC-CCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEe
Q 010538 175 TSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECN-FSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLID 249 (508)
Q Consensus 175 ~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n-~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD 249 (508)
........++.++ +.+.+ ...+++..|++..+.. .-|.+.| ++.+.++|++ ||+++|+|
T Consensus 177 ~~~~~~~~~~~l~--~~~~~--~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~------------~gillI~D 240 (443)
T PRK07483 177 DEAYGQRLADELE--AKILE--LGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDR------------YGVLLILD 240 (443)
T ss_pred HHHHHHHHHHHHH--HHHHh--cCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHH------------hCCEEEEe
Confidence 0000000123444 33321 1135678888887775 3477776 4455555555 99999999
Q ss_pred cccc-CCCCC----CCCCCCCCcEEEEeccccccCCC-cceEEEEechhHhhhccccccCceEEecccchhhhhhccCcc
Q 010538 250 AAKG-CVTQP----PDLSKYPVDFVVMSFYKIFGYPT-GLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 250 ~a~~-~g~~~----~d~~~~~~D~~~~S~~K~~g~P~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
+++. +|..- .+......|+++++ |.+++-. -+|.++++++..+.+.+.- +
T Consensus 241 EV~tGfGRtG~~~a~~~~gv~PDiv~~g--K~l~gG~~Pi~av~~~~~i~~~~~~~~-~--------------------- 296 (443)
T PRK07483 241 EVMCGMGRTGTLFACEEDGVAPDLVTIA--KGLGAGYQPIGAVLASDRIYDAIADGS-G--------------------- 296 (443)
T ss_pred cceeCcccCcHHHHHhhcCCCCCeeeeh--hhhccCccccEEEEEcHHHHHHHhcCC-C---------------------
Confidence 9986 33211 01112247999986 9655211 2799999988866554210 0
Q ss_pred ccccCCC--CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEE
Q 010538 324 ELFEDGT--ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVS 401 (508)
Q Consensus 324 ~~~~~gt--~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 401 (508)
.....+| -|..+.++..++++.+.+ +.+.++..++.++|.+.|+++.. ...++..-. -++.++.
T Consensus 297 ~~~h~~T~~gnpl~~aaa~a~l~~i~~---~~l~~~~~~~g~~l~~~L~~l~~-----~~~~i~~vR------G~Glm~g 362 (443)
T PRK07483 297 FFQHGHTYLGHATACAAALAVQRVIAE---DGLLANVRARGEQLRARLRERLG-----QHPHVGDIR------GRGLFVG 362 (443)
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHh-----cCCCeeeEe------ecccEEE
Confidence 0001122 345556666777887766 45678888888998888876411 111111111 1266777
Q ss_pred EEeeCCCC--CccC-----HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCce
Q 010538 402 FNLKRPDG--SWFG-----YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGA 474 (508)
Q Consensus 402 ~~~~~~~~--~~~~-----~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (508)
+.+..... ..++ ...+.+.+.++|+.+.+...+..+ ..++.
T Consensus 363 ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~~~--------------------------------~~~~~ 410 (443)
T PRK07483 363 VELVADRATKAPFDPALKLHARIKREAMARGLMVYPMGGTIDG--------------------------------VRGDH 410 (443)
T ss_pred EEEeecccccCCCCchhhHHHHHHHHHHHCCcEEEecCccccC--------------------------------CCCCE
Confidence 77643210 0011 134677788899998753111000 01468
Q ss_pred EEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 475 IRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 475 iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
+|+.+-+-.|++|+|++++++.+.++.+
T Consensus 411 l~~~PpL~it~~eid~~~~~l~~~l~~~ 438 (443)
T PRK07483 411 VLLAPPFIITAAQIDEIVERLGDAIDAA 438 (443)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887654
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-09 Score=116.09 Aligned_cols=349 Identities=13% Similarity=0.117 Sum_probs=188.9
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+ .+--+|.+.+++.+++. ... .... ......++-+++.+.+.. .+ .+.|++++
T Consensus 97 dG~~yiD~~~g~g~~~lGh~~p~v~~av~~ql~-~~~---~~~~-----~~~~~~~lAe~l~~~~p~-~~--~v~f~~SG 164 (474)
T PLN02482 97 DGNEYIDYVGSWGPAIIGHADDEVLAALAETMK-KGT---SFGA-----PCLLENVLAEMVIDAVPS-VE--MVRFVNSG 164 (474)
T ss_pred CCCEEEEecccccccccCCCCHHHHHHHHHHHh-hCC---CCCC-----CCHHHHHHHHHHHHhCCC-CC--EEEEeCCh
Confidence 6788999744 33446888888766543 211 1111 112233445566666643 35 89999999
Q ss_pred HHHHHHHHhhcC-CCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCC
Q 010538 113 TAALKLVGEAFP-WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGAS 191 (508)
Q Consensus 113 t~al~~~~~~l~-~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~ 191 (508)
|+|+..++.... ..+..+|+.....|-....+.-.....|......|...........+...... .|++.++ +.
T Consensus 165 sEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---nd~~~l~--~~ 239 (474)
T PLN02482 165 TEACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPY---NDLEAVK--KL 239 (474)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecC---CChHHHH--HH
Confidence 999988776542 23456676655433332211111000010000001000000000000000000 0355666 55
Q ss_pred CCCCCCCCCCceEEEEeCCCCCCccccCHH----HHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCC-C----CCC
Q 010538 192 FPERDPAGDAYNLFAFPSECNFSGSRFNLD----LINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQP-P----DLS 262 (508)
Q Consensus 192 l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~----~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~-~----d~~ 262 (508)
+++ ..+++..|++..+....|.+.|.+ .+.++|++ +|+++|+|+++. |..- . ..-
T Consensus 240 l~~---~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~------------~g~lLI~DEV~t-GfR~g~~ga~~~~ 303 (474)
T PLN02482 240 FEA---NKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKE------------NGALLVFDEVMT-GFRIAYGGAQEYF 303 (474)
T ss_pred HHh---CCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHH------------cCCEEEEecccc-CeecCcchHhHHh
Confidence 532 235678999999999999988854 56666665 999999999985 3211 0 001
Q ss_pred CCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCC--CChhHHHHHH
Q 010538 263 KYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGT--ASFLSIASIR 340 (508)
Q Consensus 263 ~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt--~~~~~~~~l~ 340 (508)
....|++++ .|.+|+=.-+|.+.+++++.+.+.+. + ..+..+| .|...+++..
T Consensus 304 gv~PDi~t~--gK~lggG~Pigav~g~~ei~~~~~~~---~--------------------~~~~~~T~~gnpl~~aAal 358 (474)
T PLN02482 304 GITPDLTTL--GKVIGGGLPVGAYGGRREIMEMVAPA---G--------------------PMYQAGTLSGNPLAMTAGI 358 (474)
T ss_pred CCCCCEEEe--cchhhCCCceEEEEEcHHHHHhhccC---C--------------------CcccccCcchhHHHHHHHH
Confidence 124688766 59776311178888998887765431 0 0112233 3445566666
Q ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCC------CccC-
Q 010538 341 HGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDG------SWFG- 413 (508)
Q Consensus 341 ~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~- 413 (508)
++++.+.+ +.+.+++.++.++|++.|+++.... ++.+..... .+++.+.+...+. ..-+
T Consensus 359 a~L~~l~~---~~~~~~~~~~g~~l~~~L~~l~~~~---g~~~~~~~v--------~g~~gi~f~~~~~~~~~~~~~~d~ 424 (474)
T PLN02482 359 HTLKRLQQ---PGTYEYLDKITKKLIQGILEAGKKA---GHEMCGGYI--------SGMFGFFFTEGPVYNFADAKKSDT 424 (474)
T ss_pred HHHHHHhc---cCHHHHHHHHHHHHHHHHHHHHHhc---CCCEEEccc--------ceEEEEEEecCCccChhhhccCCH
Confidence 67787754 4577888899999999887752100 111221111 3355444432110 0001
Q ss_pred --HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHH
Q 010538 414 --YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVN 491 (508)
Q Consensus 414 --~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l 491 (508)
...+.+.+.++||.+.+... +. + .+..-+|++|||++
T Consensus 425 ~~~~~~~~~l~~~Gv~~~~~~~--------------------------------------~~--~-~psl~ht~~dId~~ 463 (474)
T PLN02482 425 AKFARFHRGMLEEGVYLAPSQF--------------------------------------EA--G-FTSLAHTEEDIDFT 463 (474)
T ss_pred HHHHHHHHHHHHCCeEEeccCC--------------------------------------CC--C-cCCCCCCHHHHHHH
Confidence 13466777789999865210 01 1 25666799999999
Q ss_pred HHhhhhhhh
Q 010538 492 RCSSFDFVN 500 (508)
Q Consensus 492 ~~~~~~~~~ 500 (508)
++++.+.++
T Consensus 464 l~al~~~l~ 472 (474)
T PLN02482 464 IAAAERVLA 472 (474)
T ss_pred HHHHHHHHH
Confidence 999988765
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-09 Score=112.80 Aligned_cols=346 Identities=14% Similarity=0.078 Sum_probs=192.6
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..+ .+--+|.+++++.++.. .. +.... ......++.+++.+.+. ..+ .+.|++++
T Consensus 51 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~-~~---~~~~~-----~~~~~~~la~~l~~~~p-~~~--~v~f~~sG 118 (428)
T PRK12389 51 DGNKYIDYLAAYGPIITGHAHPHITKAITEAAE-NG---VLYGT-----PTELEIEFAKMLKEAIP-SLE--KVRFVNSG 118 (428)
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHH-hC---CccCC-----CCHHHHHHHHHHHHhCC-CCc--EEEEeCCH
Confidence 6788999743 34447888888766543 21 11111 11223445556666654 234 79999999
Q ss_pred HHHHHHHHhhcC-CCCCCeEEEecccccch-HHHHHHHHhcCCeEEEE--ccCCccCccccccccccccccccchhhhhc
Q 010538 113 TAALKLVGEAFP-WSHQSSYMYTMENHNSV-LGIREYALSQGAAAFAI--DVEEAVDNDGLSESLVTSTKISLLPIQRRK 188 (508)
Q Consensus 113 t~al~~~~~~l~-~~~g~~vl~~~~~h~s~-~~~~~~~~~~G~~v~~v--~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~ 188 (508)
++|+..++.... ..+...||.....|-.. ...+.. .|...... |...........+....+ -.|++.++
T Consensus 119 seA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~~l~- 191 (428)
T PRK12389 119 TEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVA---AGSGPSTLGTPDSAGVPKSIAQEVITVP---FNDIEALK- 191 (428)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHh---cCCcccccCCCCCCCCCCcccCceEEcC---CCCHHHHH-
Confidence 999988776442 33456677665444332 222221 11111000 000000000000000000 01456666
Q ss_pred CCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCC----C
Q 010538 189 GASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPP----D 260 (508)
Q Consensus 189 ~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~----d 260 (508)
+.+.+. .+++..|++..+....|.+.| +++|.++|++ +|+++|+|++++..-... .
T Consensus 192 -~~l~~~---~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~------------~g~llI~DEV~tG~Rt~~~~a~~ 255 (428)
T PRK12389 192 -EALDKW---GDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHE------------AGALVIYDEVITAFRFMYGGAQD 255 (428)
T ss_pred -HHHHhc---CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHH------------cCCEEEEEccccccccCcchhhH
Confidence 555321 356788999889999999998 7788888887 999999999987431111 0
Q ss_pred CCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCC--CCChhHHHH
Q 010538 261 LSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDG--TASFLSIAS 338 (508)
Q Consensus 261 ~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g--t~~~~~~~~ 338 (508)
......|+++++ |.+++=.-+|.+.+++++.+.+.+. +. .+..+ ..|....++
T Consensus 256 ~~gv~PDivt~g--K~lggG~Pi~av~~~~~i~~~~~~~--~~---------------------~~~~~T~~gnpl~~Aa 310 (428)
T PRK12389 256 LLGVEPDLTALG--KIIGGGLPIGAYGGRKDIMEQVAPL--GP---------------------AYQAGTMAGNPASMAA 310 (428)
T ss_pred HhCCCCCeeeec--hhhcCCCceeEEeEHHHHHhhhccC--CC---------------------cccccCCccCHHHHHH
Confidence 112247887665 9666311178888888887655421 00 01112 234556666
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCce-EEEecCCCCCcccCCCCceEEEEeeCCCCCc------
Q 010538 339 IRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADV-CTIYGTYTSEVSYHDTGSMVSFNLKRPDGSW------ 411 (508)
Q Consensus 339 l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------ 411 (508)
..++++.+.+. ++.++..++.++|++.|+++... .+. +.+... .+++.+.+.......
T Consensus 311 ala~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~--~~~~~~v~r~----------~g~~gi~~~~~~~~~~~~~~~ 375 (428)
T PRK12389 311 GIACLEVLQQE---GVYEKLDRLGAMLEEGILEAAEK--HGITITINRL----------KGALTVYFTDEKVTNYDQAER 375 (428)
T ss_pred HHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHHHHh--CCCCEEEEec----------CcEEEEEEeCCCCCChhhhcc
Confidence 77778877653 57788899999999988764200 011 111111 335555553211100
Q ss_pred cC---HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHH
Q 010538 412 FG---YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDA 488 (508)
Q Consensus 412 ~~---~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev 488 (508)
.+ ...+.+.+.++||.+.+.. .+.+. +.+-.|++|+
T Consensus 376 ~~~~~~~~~~~~l~~~Gv~~~~~~---------------------------------------~~~~~--~~l~~t~e~i 414 (428)
T PRK12389 376 SDGEAFGKFFKLMLNQGINLAPSK---------------------------------------YEAWF--LTTAHTEEDI 414 (428)
T ss_pred cCHHHHHHHHHHHHHCCcEeecCC---------------------------------------CCCee--ecCCCCHHHH
Confidence 01 2346777888999987631 12233 4456799999
Q ss_pred HHHHHhhhhhhh
Q 010538 489 KVNRCSSFDFVN 500 (508)
Q Consensus 489 ~~l~~~~~~~~~ 500 (508)
+++++++.+.++
T Consensus 415 d~~~~~l~~~l~ 426 (428)
T PRK12389 415 EETLEAVDRAFA 426 (428)
T ss_pred HHHHHHHHHHHH
Confidence 999999987764
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.1e-09 Score=113.03 Aligned_cols=362 Identities=10% Similarity=0.028 Sum_probs=195.7
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCC-----CCCCceEE
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA-----SMKDYKCI 107 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~-----~~~~~~i~ 107 (508)
++.-|+|..+ .+--+|.+++++.++.. .........+. .....++-+++++++.. ..+ .+.
T Consensus 62 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~-~l~~~~~~~~~-----~~~~~~lae~L~~~~p~~~~~~~~~--~v~ 133 (472)
T PRK08742 62 DGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAG-ELEQVMLAGFT-----HEPAVQLAEQLLAIAPRQDGRAPLS--KVF 133 (472)
T ss_pred CCCEEEEcCccHHhccCCCCCHHHHHHHHHHHH-hCCCccccccC-----CHHHHHHHHHHHHhCCCcccCCCCC--EEE
Confidence 6788999743 35568888888766442 21100010111 12234555666676643 234 799
Q ss_pred EcCChHHHHHHHHhhcC-C------CCCCeEEEecccc-cchHHHHHHHHh------cC---CeEEEEccCCccCccccc
Q 010538 108 FTSGATAALKLVGEAFP-W------SHQSSYMYTMENH-NSVLGIREYALS------QG---AAAFAIDVEEAVDNDGLS 170 (508)
Q Consensus 108 ~t~g~t~al~~~~~~l~-~------~~g~~vl~~~~~h-~s~~~~~~~~~~------~G---~~v~~v~~~~~~~~~~l~ 170 (508)
|++++++|+..++.... + ....+||.....| ............ ++ ..+..+|........ ..
T Consensus 134 f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~-~~ 212 (472)
T PRK08742 134 YADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAE-PG 212 (472)
T ss_pred EeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccccc-cC
Confidence 99999999988776542 1 1235666665433 333322221100 00 012233321100000 00
Q ss_pred cccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeC-CCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEe
Q 010538 171 ESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPS-ECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLID 249 (508)
Q Consensus 171 ~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~-~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD 249 (508)
+ .....-..+++.++ +.+++ ..+++..|++.- +....|.+.|.+..-+-+++ +|+++|+++|+|
T Consensus 213 ~--~~~~~~~~~~~~l~--~~~~~---~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~--------lc~~~gillI~D 277 (472)
T PRK08742 213 Q--SAEDYALQAADALQ--ALFEQ---SPGEICALILEPRLQCAGGMRMHHPAYLRRARE--------LCDAHGAFLIAD 277 (472)
T ss_pred C--CHHHHHHHHHHHHH--HHHHh---CCCceEEEEEccccccCCCcccCCHHHHHHHHH--------HHHHcCCEEEEe
Confidence 0 00000000244555 44421 135678888877 47777887774433333333 455599999999
Q ss_pred cccc-CCCCC----CCCCCCCCcEEEEeccccccCCC-cceEEEEechhHhhhccccccCceEEecccchhhhhhccCcc
Q 010538 250 AAKG-CVTQP----PDLSKYPVDFVVMSFYKIFGYPT-GLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 250 ~a~~-~g~~~----~d~~~~~~D~~~~S~~K~~g~P~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
+++. +|..- .+......|+++++ |.+++-. -+|.+++++++.+.+.+....+
T Consensus 278 EV~TGfGRtG~~~a~e~~gv~PDiv~~g--Kgl~gG~~Plaav~~~~ei~~~~~~~~~~~-------------------- 335 (472)
T PRK08742 278 EIATGFGRTGTLFACEQAGVMPDLLCLS--KGLTGGFLPLSAVLATQQLYDAFLDDSRER-------------------- 335 (472)
T ss_pred chhhCCCCCccchHHHhcCCCCCEEEEc--ccccCCCCCcceeeccHHHHHHhhccCccC--------------------
Confidence 9986 44321 11112347999997 9665211 2789999988865443210000
Q ss_pred ccccCCC--CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEE
Q 010538 324 ELFEDGT--ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVS 401 (508)
Q Consensus 324 ~~~~~gt--~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 401 (508)
.....+| -|....++..++++.+.+. ++.++..++.++|.+.++.+. ...++.+-.. ++.++.
T Consensus 336 ~~~h~~T~~gnpl~~Aaa~a~L~~i~~~---~l~~~~~~~g~~l~~~~~~~~------~~~~i~dvRG------~Gl~~g 400 (472)
T PRK08742 336 AFLHSHSYTGNPLACAAALATLDIFADD---DVIARNQPTAARMTQLAAQIG------EHPHVADVRQ------AGMVVA 400 (472)
T ss_pred ccCcCCCCCccHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHh------cCCCeeeEec------cceEEE
Confidence 0001122 3556677777788887764 455666777777776655431 1111222111 267777
Q ss_pred EEeeCCCC--CccC-----HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCce
Q 010538 402 FNLKRPDG--SWFG-----YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGA 474 (508)
Q Consensus 402 ~~~~~~~~--~~~~-----~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (508)
+.+..... ..+. ...+.+.+.++||.+++. .+.
T Consensus 401 iel~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~----------------------------------------g~v 440 (472)
T PRK08742 401 FELTRGGNKRTPFPPAARVGLHAYRAALARGVVLRPL----------------------------------------GDV 440 (472)
T ss_pred EEeccCccccccCCchhHHHHHHHHHHHHCCeEEEec----------------------------------------CCE
Confidence 77742111 0011 134667777899998651 368
Q ss_pred EEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 475 IRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 475 iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
||+.+.+-.|++||+.+++.+.+.++.
T Consensus 441 i~~~PpL~it~~ei~~~~~~l~~~l~~ 467 (472)
T PRK08742 441 LYWMPPYCVDEAQLALLADTTRHAIDE 467 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987654
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.9e-09 Score=112.15 Aligned_cols=362 Identities=13% Similarity=0.078 Sum_probs=193.7
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCC-CceEEEc-C
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMK-DYKCIFT-S 110 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~-~~~i~~t-~ 110 (508)
++..|+|..+ .+--+|.+++++.+++..... .....+ ......++-+++.+++..... ...+.|+ +
T Consensus 61 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~-~~~~~~-----~~~~~~~la~~L~~~~p~~~~~~~~v~f~~~ 134 (464)
T PRK06938 61 EGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELP-LHTLDL-----TTPVKDQFVQDLFASLPEAFAREAKIQFCGP 134 (464)
T ss_pred CCCEEEEccCCccccccCCCCHHHHHHHHHHHHhhhc-cccccc-----CCHHHHHHHHHHHHhCcccccccceEEEeCC
Confidence 7888999733 355588888887665422111 010011 112233334555555532210 0146665 7
Q ss_pred ChHHHHHHHHhhcC-CCCCCeEEEeccc-ccchHHHHHHHHh------cC---CeEEEEccCCccCcccccccccccccc
Q 010538 111 GATAALKLVGEAFP-WSHQSSYMYTMEN-HNSVLGIREYALS------QG---AAAFAIDVEEAVDNDGLSESLVTSTKI 179 (508)
Q Consensus 111 g~t~al~~~~~~l~-~~~g~~vl~~~~~-h~s~~~~~~~~~~------~G---~~v~~v~~~~~~~~~~l~~~~~~~~~~ 179 (508)
++++|+..++.... ..+...||..... |......+..... .+ ..+..+|........ ... ......
T Consensus 135 SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~--~~~~~~ 211 (464)
T PRK06938 135 TGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCP-FGL--GGEAGV 211 (464)
T ss_pred CcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCcccccc-ccC--chhhHH
Confidence 99999988776542 2344566665543 3333333322100 00 112333332110000 000 000000
Q ss_pred ccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecccc-C
Q 010538 180 SLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKG-C 254 (508)
Q Consensus 180 ~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~-~ 254 (508)
..+.+.++ +.+.+.....+++..|++.-+....|.+.| ++++.++|+ ++|+++|+|+++. +
T Consensus 212 ~~~~~~l~--~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~------------~~giLlI~DEV~tGf 277 (464)
T PRK06938 212 RANLHYLE--NLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITE------------EAGIPLIVDEIQSGF 277 (464)
T ss_pred HHHHHHHH--HHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHH------------HcCCEEEEeccccCC
Confidence 01244555 444321111136788888888887788877 335555555 4999999999986 3
Q ss_pred CCCC----CCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCC
Q 010538 255 VTQP----PDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGT 330 (508)
Q Consensus 255 g~~~----~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt 330 (508)
|..- .+.-....|+++++ |.+++-.-+|.++.+++. +.+.+...++ ...
T Consensus 278 GRtG~~~a~e~~gv~PDiv~~g--KglggG~PlsAv~~~~~~-~~~~~~~~~~------------------------T~~ 330 (464)
T PRK06938 278 GRTGKMFAFEHAGIIPDVVVLS--KAIGGSLPLAVVVYREWL-DTWQPGAHAG------------------------TFR 330 (464)
T ss_pred CcCcHHHHHHhcCCCCCEEEee--ccccCCCceEEEeehhHh-hccCCCCCCC------------------------CCC
Confidence 3211 11112247999997 966631227888888764 3332211110 012
Q ss_pred CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCC
Q 010538 331 ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGS 410 (508)
Q Consensus 331 ~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 410 (508)
-|..+.++..+.++.+.+ +++.++.+++.++|.+.|+++.. ...++..-.. .+.++.+.+......
T Consensus 331 gnpla~Aaa~a~L~~l~~---~~l~~~~~~~G~~l~~~L~~l~~-----~~~~i~~VrG------~Glm~gie~~~~~~~ 396 (464)
T PRK06938 331 GNQMAMAAGSATLRYIKE---HRLAEHAAAMGERLREHLRQLQR-----DYPQLGDVRG------RGLMLGVEIVDPQGE 396 (464)
T ss_pred cCHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHH-----hCCCeeeeec------cceEEEEEeccCccc
Confidence 344556666667777655 46778888899999998877521 1112222111 266777777432110
Q ss_pred ------c-cC---HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecC
Q 010538 411 ------W-FG---YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFG 480 (508)
Q Consensus 411 ------~-~~---~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~ 480 (508)
. .+ ...+...+.++|+.+.++. ...+.+|+.+.
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g-------------------------------------~~~~~l~~~Pp 439 (464)
T PRK06938 397 PDALGHPPANGELASLIQRECLRRGLILELGG-------------------------------------RHGSVVRFLPP 439 (464)
T ss_pred ccccccCCccHHHHHHHHHHHHHCCeEEeecC-------------------------------------CCCCEEEEECC
Confidence 0 00 1345667778999986521 01468999999
Q ss_pred CCCCHHHHHHHHHhhhhhhhh
Q 010538 481 YMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 481 ~~~t~eev~~l~~~~~~~~~~ 501 (508)
+-.|++|++++++++.+.+..
T Consensus 440 l~it~~eid~~~~~l~~~l~~ 460 (464)
T PRK06938 440 LIITAEQIDEVAEIFAEAVAA 460 (464)
T ss_pred CccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999887653
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.5e-09 Score=113.17 Aligned_cols=353 Identities=12% Similarity=0.079 Sum_probs=188.8
Q ss_pred CCCeeeeCCC------CCCCCHHHHH--HHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC-CCCCCceEEEc
Q 010538 39 NGTVYLDHAG------ATLYSELQME--AIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN-ASMKDYKCIFT 109 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~-~~~~~~~i~~t 109 (508)
++.-|+|..+ .|--+|.+++ ++.+++..-.+..+..... ......++-++++++.+ -..+ .+.|+
T Consensus 43 dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~ql~~l~~~~~~~~~~----~~~~~~~la~~l~~~~~p~~~~--~v~f~ 116 (443)
T PRK08297 43 TGRRYLDMFTFFASSALGMNHPALADDPEFRAELGRAALNKPSNSDV----YTVEMARFVDTFARVLGDPELP--HLFFV 116 (443)
T ss_pred CCCEeeecccCHhhhcCCCCChHHhhHHHHHHHHHHhhhhccccCCc----CCHHHHHHHHHHHhhcCCCCCC--EEEEe
Confidence 5778888643 3555888888 7655442211111111101 12233345556666653 2234 79999
Q ss_pred CChHHHHHHHHhhcC-C-------C-----CCCeEEEecccc-cchHHHHHHHHh----cC-CeE---EEEccCC-ccCc
Q 010538 110 SGATAALKLVGEAFP-W-------S-----HQSSYMYTMENH-NSVLGIREYALS----QG-AAA---FAIDVEE-AVDN 166 (508)
Q Consensus 110 ~g~t~al~~~~~~l~-~-------~-----~g~~vl~~~~~h-~s~~~~~~~~~~----~G-~~v---~~v~~~~-~~~~ 166 (508)
+|+++|+..++.... . + ...+||.....| ............ .. ... ..+|... ....
T Consensus 117 ~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (443)
T PRK08297 117 DGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLRFPL 196 (443)
T ss_pred CchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCCCCCCCCC
Confidence 999999988776541 1 1 124576665444 333322221100 00 000 0011000 0000
Q ss_pred -c-ccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCC
Q 010538 167 -D-GLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFS 240 (508)
Q Consensus 167 -~-~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~ 240 (508)
. ..++ ....-.-++++++ +.+.+ ..+++..|++.-+....|.+.| ++++.++|++
T Consensus 197 ~~~~~~~---~~~~~~~~~~~~~--~~i~~---~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~----------- 257 (443)
T PRK08297 197 PGEDLEE---VEALEAEALAQAR--AAFER---HPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDE----------- 257 (443)
T ss_pred cccccch---hhHHHHHHHHHHH--HHHHh---CCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHH-----------
Confidence 0 0000 0000001234444 34422 2467899999888888888755 4455555555
Q ss_pred CCCeEEEEecccc-CCCCCC----CCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhh
Q 010538 241 KGRWMVLIDAAKG-CVTQPP----DLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDF 315 (508)
Q Consensus 241 ~~g~~vivD~a~~-~g~~~~----d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~ 315 (508)
+|+++|+|+++. +|.... +......|+++++ |.++ + |.+++.++..+.....+.+
T Consensus 258 -~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~g--K~l~-~---~a~l~~~~i~~~~~~~~~~------------- 317 (443)
T PRK08297 258 -HDALLIFDEVQTGVGLTGTAWAYQQLGVRPDIVAFG--KKTQ-V---CGIMAGRRVDEVEDNVFAV------------- 317 (443)
T ss_pred -cCCEEEEechhhccCccchHHHHHhcCCCCCEEEec--cccc-c---cceecchHHHHhhhhhccC-------------
Confidence 999999999985 444311 0112247999865 9764 3 3344444432211111100
Q ss_pred hhhccCccccccCCC--CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceE--EEecCCCCCc
Q 010538 316 VKRRQGVEELFEDGT--ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVC--TIYGTYTSEV 391 (508)
Q Consensus 316 ~~~~~~~~~~~~~gt--~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~--~~~~~~~~~~ 391 (508)
.....+| .|....++..++++.+.+ +++.+++.++.++|.+.|+++.. ..+.+ .+. +
T Consensus 318 --------~~~~~~T~~gnpl~~aaa~a~L~~l~~---~~l~~~~~~~g~~l~~~L~~l~~--~~~~~~~~vr---g--- 378 (443)
T PRK08297 318 --------SSRINSTWGGNLVDMVRARRILEVIEE---DGLVENAARQGEYLLARLEELAA--EFPAVVSNVR---G--- 378 (443)
T ss_pred --------ccccCCCCCccHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHH--HCCCcceeee---c---
Confidence 0011233 345556666667777655 35677888888888888876521 00111 111 1
Q ss_pred ccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCC
Q 010538 392 SYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKP 471 (508)
Q Consensus 392 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 471 (508)
.+.++.+.+.+.. ....+.+.+.++||.+.++.
T Consensus 379 ----~G~~~~i~~~~~~----~~~~~~~~l~~~Gvl~~~~~--------------------------------------- 411 (443)
T PRK08297 379 ----RGLMCAFDLPTTA----DRDEVIRRLWEEGVLVLPCG--------------------------------------- 411 (443)
T ss_pred ----cceEEEEEecCHH----HHHHHHHHHHHCCEEEecCC---------------------------------------
Confidence 2678888875421 12347777888999986521
Q ss_pred CceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 472 TGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 472 ~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
...+|+++.+.+|++|++.+++++.+.++.+
T Consensus 412 ~~~lr~~P~l~~t~~eid~~l~~l~~~l~~~ 442 (443)
T PRK08297 412 ERSIRFRPALTVTTEEIDAAIDALRRALPEV 442 (443)
T ss_pred CCeEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence 3579999999999999999999999887644
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.8e-09 Score=121.19 Aligned_cols=358 Identities=16% Similarity=0.130 Sum_probs=202.1
Q ss_pred CCCeeeeCC----CCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHH
Q 010538 39 NGTVYLDHA----GATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATA 114 (508)
Q Consensus 39 ~~~iyld~~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~ 114 (508)
++.-|+|.. ..|--+|.+++++.+++. .. +.+..+ ......++-+++++.+....+ .+.|++++|+
T Consensus 622 dG~~ylD~~~g~~~lGH~hp~v~~Ai~~q~~-~l--~~~~~~-----~~~~~~~lAe~L~~~~p~~~~--~v~f~nSGsE 691 (1013)
T PRK06148 622 RGRAYLDCFNNVCHVGHAHPRVVAAAARQAA-RL--NTNTRY-----LHDAIVAYAERLTATLPDGLT--VAFFVNSGSE 691 (1013)
T ss_pred CCCEEEEcccChhhcCCCCHHHHHHHHHHHh-hc--CCcCCc-----CCHHHHHHHHHHHHhCCCCcC--EEEEeCCcHH
Confidence 678899973 345558889888766543 22 122211 122344556666676654445 7899999999
Q ss_pred HHHHHHhhcC-CCCCCeEEEeccc-ccchHHHHHHH-----HhcC----CeEEEEccCC--ccCcccccccccccccccc
Q 010538 115 ALKLVGEAFP-WSHQSSYMYTMEN-HNSVLGIREYA-----LSQG----AAAFAIDVEE--AVDNDGLSESLVTSTKISL 181 (508)
Q Consensus 115 al~~~~~~l~-~~~g~~vl~~~~~-h~s~~~~~~~~-----~~~G----~~v~~v~~~~--~~~~~~l~~~~~~~~~~~~ 181 (508)
|+..++.... ..+...||+.... |.......... ...+ ..+..++... ......- + ......
T Consensus 692 A~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~-~~~~~~--- 766 (1013)
T PRK06148 692 ANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWP-D-AEHGRR--- 766 (1013)
T ss_pred HHHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCC-h-hhhHHH---
Confidence 9988776542 2344566665443 33332222110 0001 1111111110 0000000 0 000000
Q ss_pred chhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecccc-CCC
Q 010538 182 LPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKG-CVT 256 (508)
Q Consensus 182 d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~-~g~ 256 (508)
..+.++ +.++.-....+++..|++..+....|.+.| ++++.++|++ +|+++|.|++|. +|.
T Consensus 767 ~~~~l~--~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~------------~g~llI~DEVqtGfGR 832 (1013)
T PRK06148 767 FAESVA--EQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRA------------AGGVCIADEVQVGFGR 832 (1013)
T ss_pred HHHHHH--HHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHH------------hCCEEEEEecccCCCC
Confidence 012222 222100112356888999888888898888 5666666766 999999999985 443
Q ss_pred CC---CCC--CCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCC
Q 010538 257 QP---PDL--SKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTA 331 (508)
Q Consensus 257 ~~---~d~--~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 331 (508)
.- .-. .....|+++++ |.+|+-.-+|.+++++++.+.+.+-. . .+....-
T Consensus 833 tG~~~~a~e~~gv~PDivt~g--K~lggG~Plgav~~~~ei~~~~~~g~---~--------------------~~~Tf~g 887 (1013)
T PRK06148 833 VGSHWWAFETQGVVPDIVTMG--KPIGNGHPMGAVVTTREIADSFDNGM---E--------------------YFNTFGG 887 (1013)
T ss_pred CCCcchhhhhcCCCcceeeec--ccccCCcceEEEEEcHHHHhhccCCC---c--------------------cccCCCC
Confidence 22 111 12247998886 97663122899999988876554210 0 0001123
Q ss_pred ChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCC-C
Q 010538 332 SFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDG-S 410 (508)
Q Consensus 332 ~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~ 410 (508)
|..+.++..++++.+.+ +++.++..++.++|++.|+++.. ...+++.-.. .+.++.+.+...+. .
T Consensus 888 npla~aaa~a~L~~i~~---e~l~~~~~~~G~~l~~~L~~l~~-----~~~~i~~VrG------~Gl~~gvel~~~~~~~ 953 (1013)
T PRK06148 888 NPVSCAIGLAVLDIIED---EDLQRNALEIGNYLLAGLRELQD-----RFDIIGDVRG------MGLFLGIELVTDRKTK 953 (1013)
T ss_pred CHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHH-----hCCCceEEee------eceEEEEEecCCcccc
Confidence 45556666667887765 46778888999999998877521 1112221111 25666777643111 1
Q ss_pred ccC---HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHH
Q 010538 411 WFG---YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFED 487 (508)
Q Consensus 411 ~~~---~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ee 487 (508)
..+ ...+...+.++||.+.+. .+ ..+.+|+.+..-.|++|
T Consensus 954 ~~~~~~~~~i~~~~~~~Gvl~~~~---g~----------------------------------~~~vlr~~Ppl~it~~~ 996 (1013)
T PRK06148 954 APATAIARYVKNGARERGILIGTE---GP----------------------------------HDNVLKIRPPLIFSRAD 996 (1013)
T ss_pred CccHHHHHHHHHHHHhCCeEEecc---CC----------------------------------CCCEEEEeCCccCCHHH
Confidence 111 234677778899998652 00 15789999999999999
Q ss_pred HHHHHHhhhhhhhh
Q 010538 488 AKVNRCSSFDFVNF 501 (508)
Q Consensus 488 v~~l~~~~~~~~~~ 501 (508)
+|++++.+.+.+..
T Consensus 997 id~~l~~l~~~l~~ 1010 (1013)
T PRK06148 997 ADHLLEVLDDVLAA 1010 (1013)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988754
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.4e-09 Score=102.07 Aligned_cols=337 Identities=13% Similarity=0.070 Sum_probs=212.3
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|||+-+ .+..+|.+++++.+++. ...- .. .....+...+..+.+.++++.+ .|+-++.+
T Consensus 57 eGk~ylDflsaysaVnqGhchpki~~aLqeq~~-kLtl-ss-----rafYnd~~~~f~~~vt~lf~~~----kvlpmnTG 125 (427)
T KOG1402|consen 57 EGKEYLDFLSAYSAVNQGHCHPKIIKALQEQAD-KLTL-SS-----RAFYNDVLGEFAEYVTKLFGYD----KVLPMNTG 125 (427)
T ss_pred CccchhhhhhhhhhcccCCCCHHHHHHHHHHHh-Hhhh-hh-----HHHhhhhHHHHHHHHHHhcCcc----eeeecccc
Confidence 6788998743 45568899988876553 2110 01 1123566777888999999986 45666666
Q ss_pred HHHHHHHHhhcC-----C---CCCCeEEEe-cccccc-hHHHHH------HHHhcC----CeEEEEccCCccCccccccc
Q 010538 113 TAALKLVGEAFP-----W---SHQSSYMYT-MENHNS-VLGIRE------YALSQG----AAAFAIDVEEAVDNDGLSES 172 (508)
Q Consensus 113 t~al~~~~~~l~-----~---~~g~~vl~~-~~~h~s-~~~~~~------~~~~~G----~~v~~v~~~~~~~~~~l~~~ 172 (508)
.+|...++.... . +.+..++++ ..++-+ ....+. ....+| ..+..||.+
T Consensus 126 aEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~~~v~Y~----------- 194 (427)
T KOG1402|consen 126 AEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPYG----------- 194 (427)
T ss_pred hhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhccCCCCCCcceeeccC-----------
Confidence 888877664432 1 223334433 322211 111000 001111 112233332
Q ss_pred cccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccc
Q 010538 173 LVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAK 252 (508)
Q Consensus 173 ~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~ 252 (508)
|.++++ .+|+ +++.+.+++.-.+-.-|.+.|....-+-+++ ||.+|++++|.|..|
T Consensus 195 ---------d~eale--~~l~-----~~~vaaFivEPIQGEaGVvvP~~GYL~~vre--------LCtkynvl~I~DEvQ 250 (427)
T KOG1402|consen 195 ---------DAEALE--VALK-----SPNVAAFIVEPIQGEAGVVVPPPGYLKKVRE--------LCTKYNVLLIADEVQ 250 (427)
T ss_pred ---------CHHHHH--HHhc-----CCCeeEEEeeccccccceEeCCchhHHHHHH--------HHHhhcEEEEehhhh
Confidence 356666 5553 5788999999999999999995544444443 444599999999999
Q ss_pred cCCC-----CCCCCCCCCCcEEEEecccccc-CCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccc
Q 010538 253 GCVT-----QPPDLSKYPVDFVVMSFYKIFG-YPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELF 326 (508)
Q Consensus 253 ~~g~-----~~~d~~~~~~D~~~~S~~K~~g-~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 326 (508)
+.-. ...|......|++... |.++ |..-+..++.+++..-.++|-.+|..
T Consensus 251 TGl~RTGk~la~d~env~PDivilg--KalSGG~~Pvsavl~~~~im~~~~pgeHgsT---------------------- 306 (427)
T KOG1402|consen 251 TGLARTGKLLACDYENVRPDIVILG--KALSGGVYPVSAVLADDDIMLNIKPGEHGST---------------------- 306 (427)
T ss_pred hcccccCcEEEeehhhcCCCeEEEe--ccccCCeeeeEEEEecHHHHhccCCCccccc----------------------
Confidence 7521 2334455568999887 8665 22226778888888655565533221
Q ss_pred cCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceE-EEecCCCCCcccCCCCceEEEEee
Q 010538 327 EDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVC-TIYGTYTSEVSYHDTGSMVSFNLK 405 (508)
Q Consensus 327 ~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~ 405 (508)
.| -|+.+.....++++.+.+ +.+.++..+|...|+..|.+++. .+ .++..-.. ++-+..+.+.
T Consensus 307 -yg-gNpLg~~vaiAalevi~e---ekL~era~~lG~~l~~~L~~l~~-----~~p~~v~~VRG------rGl~~ai~i~ 370 (427)
T KOG1402|consen 307 -YG-GNPLGCAVAIAALEVIVE---EKLVERAAKLGEILRDQLNKLQK-----KFPHVVKEVRG------RGLLNAIVIN 370 (427)
T ss_pred -cC-CChHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhccc-----cccchhheeec------cceEEEEEec
Confidence 11 244555666678998876 78899999999999999998842 11 11222211 2555555554
Q ss_pred CCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCH
Q 010538 406 RPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTF 485 (508)
Q Consensus 406 ~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ 485 (508)
..+....+..++.-.++++|....+.+ .+.||+++-.-.++
T Consensus 371 ~~~~~~~~aw~~cl~lk~~g~LAkptH---------------------------------------~~IiRfaPPL~I~e 411 (427)
T KOG1402|consen 371 PSKTSGQDAWDVCLALKENGLLAKPTH---------------------------------------GNIIRFAPPLVISE 411 (427)
T ss_pred cccccchhHHHHHHcccccccccCCCC---------------------------------------CCeEEecCCcccCH
Confidence 333333456678888889999876642 56899999999999
Q ss_pred HHHHHHHHhhhhhhh
Q 010538 486 EDAKVNRCSSFDFVN 500 (508)
Q Consensus 486 eev~~l~~~~~~~~~ 500 (508)
+|++.-++++.+.+.
T Consensus 412 ~dl~eg~e~i~k~i~ 426 (427)
T KOG1402|consen 412 EDLREGIEAIEKTIA 426 (427)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999987664
|
|
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.9e-10 Score=111.51 Aligned_cols=333 Identities=15% Similarity=0.084 Sum_probs=194.8
Q ss_pred CchHHHHHHhhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC-----
Q 010538 24 KSIDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN----- 98 (508)
Q Consensus 24 ~~~~~~r~~~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~----- 98 (508)
+.+..+|+ -...+ ...--||.+. .|..+++.. ..++...-+ ... ++..++.++-+|+.+|+++.
T Consensus 64 ~PiTF~RQ-vlal~-~~p~lLd~~~---fp~Dai~RA-~~~L~~~gG-s~G----aYS~SqGv~~vR~~VA~~I~rRDG~ 132 (475)
T KOG0258|consen 64 KPITFLRQ-VLALC-QYPELLDSPE---FPTDAIKRA-KRILNDCGG-SLG----AYSDSQGVPGVRKHVAEFIERRDGI 132 (475)
T ss_pred CChhHHHH-HHHHh-cChhhcCCCC---CCHHHHHHH-HHHHHhcCC-ccc----ccccccCChhHHHHHHHHHHhccCC
Confidence 45667776 54333 2333455443 577777665 445543222 111 22234557778888888875
Q ss_pred -CCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCcccccccccccc
Q 010538 99 -ASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTST 177 (508)
Q Consensus 99 -~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~ 177 (508)
++|+ +|.+|.|++.|+..++..+...+.+-|+++...||=+.+.+... |...+..-+++...+
T Consensus 133 p~~p~--dI~LT~GAS~ai~~il~l~~~~~~~GvliPiPQYPLYsAti~l~---~~~~v~YyLdEe~~W----------- 196 (475)
T KOG0258|consen 133 PADPE--DIFLTTGASPAIRSILSLLIAGKKTGVLIPIPQYPLYSATISLL---GGTQVPYYLDEESNW----------- 196 (475)
T ss_pred CCCHH--HeeecCCCcHHHHHHHHHHhcCCCCceEeecCCCchhHHHHHHh---CCcccceeeccccCC-----------
Confidence 5666 89999999999999999886667788999999999887766554 666655556654444
Q ss_pred ccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC-
Q 010538 178 KISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT- 256 (508)
Q Consensus 178 ~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~- 256 (508)
+.|.++++ ..+++.. ..=+++++++-++-||||.++..+-|.++++ .|.+.++.++.|.++---.
T Consensus 197 --~ld~~el~--~~~~eA~-k~i~~r~lvvINPGNPTGqvls~e~ie~i~~---------fa~~~~l~llaDEVYQ~Nvy 262 (475)
T KOG0258|consen 197 --SLDVAELE--RSVDEAR-KGINPRALVVINPGNPTGQVLSEENIEGIIC---------FAAEEGLVLLADEVYQDNVY 262 (475)
T ss_pred --CCCHHHHH--HHHHHHh-ccCCceEEEEECCCCccchhhcHHHHHHHHH---------HHHHcCeEEechHHHHhhcc
Confidence 22677777 6665432 2335678888889999999999888888777 5667999999998853211
Q ss_pred ----CCCCCC-------CC---CCc-EEEEecccccc---CCCcceEEEE---echhHhhhc--------cccccCceEE
Q 010538 257 ----QPPDLS-------KY---PVD-FVVMSFYKIFG---YPTGLGALIM---RNDAAKLLK--------NTYFSGGTVA 307 (508)
Q Consensus 257 ----~~~d~~-------~~---~~D-~~~~S~~K~~g---~P~G~G~l~~---~~~~~~~l~--------~~~~g~~~~~ 307 (508)
.-.+++ .. .+- +-..|.||.+. ++.| |++=+ .++....+. |.+.|-.
T Consensus 263 ~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RG-GYmEv~n~~prv~~qi~Kl~si~lc~~V~GQ~--- 338 (475)
T KOG0258|consen 263 TTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRG-GYMESLNRDPRVKQQIKKLASIKLCPQVSGQK--- 338 (475)
T ss_pred CCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccC-CeeecccCChhHHHHHHHHHhhhhcCCccchh---
Confidence 111111 11 122 33447778443 2443 55543 222222111 1111100
Q ss_pred ecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCC
Q 010538 308 ASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTY 387 (508)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~ 387 (508)
.... ....-.+|.+++.. +..+ .+.+.+.++..++.+.+.++++. |+....++
T Consensus 339 -------~vdl---~VnPP~Pgd~Sy~~---------~~~E--kd~il~~l~~ra~l~~~~~ns~~------gi~cn~~q 391 (475)
T KOG0258|consen 339 -------LVDL---VVNPPKPGDPSYDL---------FSSE--KDGILSSLRSRAKLTEDAFNSLE------GISCNPVQ 391 (475)
T ss_pred -------hhce---ecCCCCCCCcchhh---------hhhh--hHhHHHHHHHHhHHHHHHHhhcC------ceeeccCc
Confidence 0000 00000112222211 1111 35666777788888999999984 78887665
Q ss_pred CCCcccCCCCceEEEE---eeC-------CCCCccCHHHHHHHHhhCCCeeccCCCCCch
Q 010538 388 TSEVSYHDTGSMVSFN---LKR-------PDGSWFGYREVEKLASLSGIQLRTGCFCNPG 437 (508)
Q Consensus 388 ~~~~~~~~~~~~v~~~---~~~-------~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~ 437 (508)
+ .+-.|. ++. ..+...|..--.++|+..||.+-+|+.+...
T Consensus 392 G---------AMY~fP~i~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFGQ~ 442 (475)
T KOG0258|consen 392 G---------AMYLFPQISLPPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGSGFGQK 442 (475)
T ss_pred c---------ceeecccccCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCCCCCC
Confidence 3 443332 221 0111123333567888999999999977654
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.6e-09 Score=110.89 Aligned_cols=357 Identities=13% Similarity=0.091 Sum_probs=190.9
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceE-EEcCC
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKC-IFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i-~~t~g 111 (508)
++.-|+|..+. +--+|.+++++.++....... ... .. ......++-+++++.+.....++.+ .++++
T Consensus 56 dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~~~~~--~~~-~~---~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~S 129 (459)
T PRK06931 56 EGNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGLPL--HTL-DL---TTPLKDAFSEYLLSLLPGQGKEYCLQFTGPS 129 (459)
T ss_pred CCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhhccc--ccc-cc---CCHHHHHHHHHHHHhCCCccccceEEEeCCC
Confidence 67889998443 555888888876654221100 111 00 1233445566667776432111124 55589
Q ss_pred hHHHHHHHHhhcC-CCCCCeEEEecccccch-HHHHHHHHh------c---CCeEEEEccCCccCccccccccccccccc
Q 010538 112 ATAALKLVGEAFP-WSHQSSYMYTMENHNSV-LGIREYALS------Q---GAAAFAIDVEEAVDNDGLSESLVTSTKIS 180 (508)
Q Consensus 112 ~t~al~~~~~~l~-~~~g~~vl~~~~~h~s~-~~~~~~~~~------~---G~~v~~v~~~~~~~~~~l~~~~~~~~~~~ 180 (508)
+++|+..++.... ..+...||.....|-.. ......... . ...+..+|........ + .....
T Consensus 130 GsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~ 202 (459)
T PRK06931 130 GADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCP-L------GIGGE 202 (459)
T ss_pred cHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCcccccc-c------cCCch
Confidence 9999988776432 34456677665444333 333222100 0 1123334432110000 0 00000
Q ss_pred cchhh----hhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEeccc
Q 010538 181 LLPIQ----RRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAK 252 (508)
Q Consensus 181 ~d~~~----l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~ 252 (508)
.+.+. ++ +.+++.....+++..|++.-+....|.+.| ++.+.++|++ +|+++|+|+++
T Consensus 203 ~~~~~~~~~~~--~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~------------~g~LlI~DEV~ 268 (459)
T PRK06931 203 AGVKALTYYFE--NFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQK------------HGILLIVDEVQ 268 (459)
T ss_pred hHHHHHHHHHH--HHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHH------------cCCEEEEecch
Confidence 01111 11 111100011345788888878888888877 3455555554 99999999998
Q ss_pred c-CCCCC----CCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCcccccc
Q 010538 253 G-CVTQP----PDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFE 327 (508)
Q Consensus 253 ~-~g~~~----~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (508)
. +|..- .+......|+++++ |.+++-.-+|.+..+++. +.+.+...++
T Consensus 269 tGfGRtG~~~a~~~~gv~PDivt~g--K~l~gG~Pi~av~~~~~~-~~~~~~~~~~------------------------ 321 (459)
T PRK06931 269 AGFARTGKMFAFEHAGIEPDIIVMS--KAVGGGLPLAVLGIKKEF-DAWQPGGHTG------------------------ 321 (459)
T ss_pred hcCCcCchHHHhhhcCCCCCEEEec--ccccCCcceeeeeeHHHH-hhccCCCCCC------------------------
Confidence 6 33211 11112247999887 966521126777777653 4333211110
Q ss_pred CCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCC
Q 010538 328 DGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRP 407 (508)
Q Consensus 328 ~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 407 (508)
..+-|..+.++..+.++.+.+. .+.++..++.++|.+.|+++.. ...++..-.. .+.++.+.+...
T Consensus 322 T~~gnpla~aaala~L~~l~~~---~l~~~~~~~G~~l~~~L~~l~~-----~~~~i~~vrG------~Glm~giel~~~ 387 (459)
T PRK06931 322 TFRGNQLAMATGLTTLKILKEE---NLAQNAAERGEWLKAQLAELQK-----RYPCIGNVRG------RGLMIGIEIVDE 387 (459)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHH-----hCCCeEeEec------CceEEEEEEccC
Confidence 0123445566666677777653 4667888888888888876521 1111221111 267777777432
Q ss_pred CCC-------ccC---HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEE
Q 010538 408 DGS-------WFG---YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRV 477 (508)
Q Consensus 408 ~~~-------~~~---~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRi 477 (508)
... ..+ ...+.+.+.++|+.+.++. ...+.+|+
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~-------------------------------------~~~~~l~~ 430 (459)
T PRK06931 388 RQPADAMGSYPADGELAAAIQKACFENGLLLERGG-------------------------------------RNGNVVRL 430 (459)
T ss_pred cccccccccCCccHHHHHHHHHHHHHCCcEEeecC-------------------------------------CCCCEEEE
Confidence 110 001 1345666778999986521 01468999
Q ss_pred ecCCCCCHHHHHHHHHhhhhhhh
Q 010538 478 SFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 478 s~~~~~t~eev~~l~~~~~~~~~ 500 (508)
.+.+-.|++|++++++++.+.+.
T Consensus 431 ~Ppl~it~~eid~~~~~l~~~l~ 453 (459)
T PRK06931 431 LPPLLITQAECEEFIDRFEQALL 453 (459)
T ss_pred ECCCCcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999988764
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.9e-12 Score=124.86 Aligned_cols=205 Identities=17% Similarity=0.187 Sum_probs=44.7
Q ss_pred CCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCC
Q 010538 47 AGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWS 126 (508)
Q Consensus 47 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~ 126 (508)
-+-+++++.+++++.+.. . .|.|-......+.+ ...+..+.+.++.+.|++.. +++++...|+.+++.++ .
T Consensus 13 LGRs~l~~~a~~a~~~~a-~-~Y~nLE~dl~~G~R-g~R~~~v~~ll~~ltgAeaA----~VvNnnaAAv~L~l~~l--a 83 (367)
T PF03841_consen 13 LGRSPLSEEAIEAVAEVA-S-GYSNLEYDLETGKR-GSRYAHVEELLCELTGAEAA----LVVNNNAAAVLLALNTL--A 83 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccc-c-cccccccccccccc-cccccccccccccccccccc----ccccccccccccccccc--c
Confidence 345566777877764422 1 12222211111211 22345677888999999865 55666667888888887 3
Q ss_pred CCCeEEEecccccchHH---HHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCce
Q 010538 127 HQSSYMYTMENHNSVLG---IREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYN 203 (508)
Q Consensus 127 ~g~~vl~~~~~h~s~~~---~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~ 203 (508)
.|.+|+++..+-..+.. +-+.++..|+++++|-...... +++++ + +++++|.
T Consensus 84 ~~~EvIvsRGelVeiGgsFRip~vm~~sGa~lvEVGttN~t~-----------------~~Dye--~------AI~e~Ta 138 (367)
T PF03841_consen 84 KGKEVIVSRGELVEIGGSFRIPDVMRQSGARLVEVGTTNRTH-----------------LSDYE--K------AITENTA 138 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccc-----------------ccccc--c------ccccccc
Confidence 56788888877665544 3345677799998886644333 45567 4 4478999
Q ss_pred EEEEeCCCCCC--c--cccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC-------CCC-CCCC---CCCCCcE
Q 010538 204 LFAFPSECNFS--G--SRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC-------VTQ-PPDL---SKYPVDF 268 (508)
Q Consensus 204 lv~~~~~~n~t--G--~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~-------g~~-~~d~---~~~~~D~ 268 (508)
++.-.|.+|.. | .-.+++++.+++|+ |++++++|...+. |.. ..++ -+.|+|+
T Consensus 139 ~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~------------~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDl 206 (367)
T PF03841_consen 139 ALLKVHTSNFRIQGFTGEVSLEELAELAKE------------HGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADL 206 (367)
T ss_dssp ----------------------HHHHHHHH------------HT--EEEE-TTHHHHHHHTT----------CCCCT-SE
T ss_pred ccccccccccccccccccccHHHHHHHHhh------------cCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCE
Confidence 99888877763 2 24589999999998 9999999987732 111 1223 3458999
Q ss_pred EEEeccccccCCCcceEEEEechhHhhhcc
Q 010538 269 VVMSFYKIFGYPTGLGALIMRNDAAKLLKN 298 (508)
Q Consensus 269 ~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~ 298 (508)
+++|+-|.+|||+ .|+++.+++++++++.
T Consensus 207 V~fSGdKlLGGPQ-aGiI~Gkk~lI~~lk~ 235 (367)
T PF03841_consen 207 VTFSGDKLLGGPQ-AGIIVGKKELIEKLKK 235 (367)
T ss_dssp EEEETTSSSSS-S--EEEEEEHHHHHHHHH
T ss_pred EEEECCCcCCCCC-eEEEEeCHHHHHHHhh
Confidence 9999999999998 6999999999988763
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.4e-09 Score=104.04 Aligned_cols=346 Identities=15% Similarity=0.109 Sum_probs=196.9
Q ss_pred chHHHHHHhhccCC-CC------CeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHH-
Q 010538 25 SIDQIRATEFKRLE-NG------TVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDY- 96 (508)
Q Consensus 25 ~~~~~r~~~f~~~~-~~------~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~- 96 (508)
.+..+-+ .|.... ++ =+|-|-.+-++..+.|.++- +.+.. .+....+.+ .+......+.++++
T Consensus 12 pIlgL~e-~f~~D~R~~KVNLgIGvY~de~Gk~pvl~aV~~Ae-~~l~~----~~~~k~Yl~---i~G~~~f~~~~~~ll 82 (396)
T COG1448 12 PILGLKE-AFKADPRPNKVNLGIGVYKDEDGKTPVLRAVKKAE-KRLLE----QEKTKNYLP---IEGLPEFLEAVQKLL 82 (396)
T ss_pred chhHHHH-HHhcCCCcCeeeeeeeeeeCCCCCcchhHHHHHHH-HHhhc----cccccccCC---cCCcHHHHHHHHHHh
Confidence 4555555 555442 22 36778888888777776553 43432 222221211 12233444555554
Q ss_pred cCCCCC---CceE--EEcCChHHHHHHHHhhcC-CCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc-cCcccc
Q 010538 97 FNASMK---DYKC--IFTSGATAALKLVGEAFP-WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA-VDNDGL 169 (508)
Q Consensus 97 ~~~~~~---~~~i--~~t~g~t~al~~~~~~l~-~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~-~~~~~l 169 (508)
||.+.. .-.+ +=|.|+|.|+.+...-+. ..++..|-+++..-++...+ .+..|.+|...|..+. ....
T Consensus 83 FG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~I---f~~aGl~v~~Y~Yyd~~~~~~-- 157 (396)
T COG1448 83 FGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAI---FEAAGLEVETYPYYDAETKGL-- 157 (396)
T ss_pred cCCCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHH---HHhcCCceeeeeccccccccc--
Confidence 553311 0022 456899999988877663 34556688888665555544 4456999999987542 2111
Q ss_pred ccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEe
Q 010538 170 SESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLID 249 (508)
Q Consensus 170 ~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD 249 (508)
|.+.+. +.|++ ..++.-++.=..+|||||.-++.++..++++ +.++.+++.++|
T Consensus 158 ------------df~~ml--a~L~~---a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~---------~~~~r~lip~~D 211 (396)
T COG1448 158 ------------DFDGML--ADLKT---APEGSVVLLHGCCHNPTGIDPTEEQWQELAD---------LIKERGLIPFFD 211 (396)
T ss_pred ------------cHHHHH--HHHHh---CCCCCEEEEecCCCCCCCCCCCHHHHHHHHH---------HHHHcCCeeeee
Confidence 344443 33321 1223233333677999999999987776666 344589999999
Q ss_pred ccc-cCCCCCCCCC--------CCCC-cEEEEeccccccCCCc--ceEEEEec---hhHhhhccccccCceEEecccchh
Q 010538 250 AAK-GCVTQPPDLS--------KYPV-DFVVMSFYKIFGYPTG--LGALIMRN---DAAKLLKNTYFSGGTVAASIADID 314 (508)
Q Consensus 250 ~a~-~~g~~~~d~~--------~~~~-D~~~~S~~K~~g~P~G--~G~l~~~~---~~~~~l~~~~~g~~~~~~~~~~~~ 314 (508)
-|+ +++.- ++-. +.+. -+++.|++|.|| .+| +|.+.+-- +...++...+.
T Consensus 212 ~AYQGF~~G-leeDa~~lR~~a~~~~~~lva~S~SKnfg-LYgERVGa~~vva~~~~~a~~v~sqlk------------- 276 (396)
T COG1448 212 IAYQGFADG-LEEDAYALRLFAEVGPELLVASSFSKNFG-LYGERVGALSVVAEDAEEADRVLSQLK------------- 276 (396)
T ss_pred hhhhhhccc-hHHHHHHHHHHHHhCCcEEEEehhhhhhh-hhhhccceeEEEeCCHHHHHHHHHHHH-------------
Confidence 764 44332 3211 1122 478889999999 877 77766532 22211111100
Q ss_pred hhhhccCccccccCCCCChhHHHHHHHH-----H--HHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCC
Q 010538 315 FVKRRQGVEELFEDGTASFLSIASIRHG-----F--NLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTY 387 (508)
Q Consensus 315 ~~~~~~~~~~~~~~gt~~~~~~~~l~~a-----l--~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~ 387 (508)
. .-|....+|+-.+......- | +|..+ +..+++|+.++++.|++.|++... ...+..+..+
T Consensus 277 ------~-~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~E--l~~Mr~Ri~~mR~~lv~~L~~~~~---~~~f~~i~~Q 344 (396)
T COG1448 277 ------A-IIRTNYSNPPAHGAAVVATILNNPELRAEWEQE--LEEMRQRILEMRQALVDALKALGA---PRNFDFIISQ 344 (396)
T ss_pred ------H-HHHhccCCCchhhHHHHHHHhCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhCC---CcccchHhhc
Confidence 0 11112233333322222111 2 34334 789999999999999999988420 1235555443
Q ss_pred CCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCcccc
Q 010538 388 TSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDII 467 (508)
Q Consensus 388 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 467 (508)
.+|.++. + ++...+.++.+++||.+..
T Consensus 345 ---------~GMFsy~--G-----ls~~QV~rLree~~IY~v~------------------------------------- 371 (396)
T COG1448 345 ---------RGMFSYT--G-----LSPEQVDRLREEFGIYLVA------------------------------------- 371 (396)
T ss_pred ---------CceeecC--C-----CCHHHHHHHHHhccEEEec-------------------------------------
Confidence 4555444 3 4445688888889999754
Q ss_pred CCCCCceEEEecCCCCCHHHHHHHHHhhhh
Q 010538 468 HGKPTGAIRVSFGYMSTFEDAKVNRCSSFD 497 (508)
Q Consensus 468 ~~~~~~~iRis~~~~~t~eev~~l~~~~~~ 497 (508)
.| ||++... |...|+++.+.+.+
T Consensus 372 ----sG--Ri~vaGl-~~~ni~~va~ai~~ 394 (396)
T COG1448 372 ----SG--RINVAGL-NTSNIDYVAKAIAA 394 (396)
T ss_pred ----CC--eeeeccC-ChhhHHHHHHHHHh
Confidence 23 8887753 67889999888765
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-08 Score=101.38 Aligned_cols=179 Identities=13% Similarity=0.065 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEc--CChHHHHHHHHhhcCCCCCCeEEEecccccchHH-HHH-------HHHhcCCeE
Q 010538 86 VRAAREQVLDYFNASMKDYKCIFT--SGATAALKLVGEAFPWSHQSSYMYTMENHNSVLG-IRE-------YALSQGAAA 155 (508)
Q Consensus 86 ~~~~r~~la~~~~~~~~~~~i~~t--~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~-~~~-------~~~~~G~~v 155 (508)
.+.+.+..|+.|+++.. ++=. -|+|+|+.+++.++ +++||+++.....-...+. .+. .++.+|++.
T Consensus 56 Rd~le~iyA~vfgaE~A---LVRpq~vSGTHAi~~~Lfg~-LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi~Y 131 (403)
T PF06838_consen 56 RDKLERIYADVFGAEDA---LVRPQFVSGTHAIALALFGV-LRPGDELLSITGKPYDTLEEVIGIRGNGPGSLKEFGIKY 131 (403)
T ss_dssp HHHHHHHHHHHCT-SEE---EEETTS-SHHHHHHHHHHHH---TT-EEEESSSS--CCHHHHHTSSSSSSSSTGGGT-EE
T ss_pred HHHHHHHHHHHhCchhh---hhcccccchHHHHHHHHHhc-CCCCCeEEEcCCCchhhHHHHhCCCCCCCCChHHhCcee
Confidence 44566778999999865 4432 48889999999999 7999999976543333222 121 134568999
Q ss_pred EEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCC-CccccCHHHHHHHHcCCcccc
Q 010538 156 FAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNF-SGSRFNLDLINIMKKNPERIL 234 (508)
Q Consensus 156 ~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~-tG~~~~i~~i~~l~~~~~~~~ 234 (508)
+.||+..++.+ |.+.++ +++ +++||+|.+.--.-. +=..+.+++|.++++.+
T Consensus 132 ~~v~L~~dg~~---------------D~~~i~--~~~------~~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~v---- 184 (403)
T PF06838_consen 132 REVPLTEDGTI---------------DWEAIK--KAL------KPNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFV---- 184 (403)
T ss_dssp EE--B-TTSSB----------------HHHHH--HHH------HTTEEEEEEE-S-TTSSS----HHHHHHHHHHH----
T ss_pred EEEeecCCCCc---------------CHHHHH--Hhh------ccCceEEEEecCCCCCCCCCCCHHHHHHHHHHH----
Confidence 99999988888 688888 444 578999998643211 11234455555554310
Q ss_pred ccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccC---CCcceEEEEechhHhhhccc
Q 010538 235 EISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGY---PTGLGALIMRNDAAKLLKNT 299 (508)
Q Consensus 235 ~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~---P~G~G~l~~~~~~~~~l~~~ 299 (508)
-..+.+++++||.+++--.......+.++|++++|+=|..|| |+| |++..+++++++....
T Consensus 185 ---k~~~p~~iifVDNCYGEFvE~~EP~~vGADl~aGSLIKNpGGgiAptG-GYIaGr~~lVe~~a~R 248 (403)
T PF06838_consen 185 ---KEINPDVIIFVDNCYGEFVETQEPTEVGADLMAGSLIKNPGGGIAPTG-GYIAGRKDLVERAAYR 248 (403)
T ss_dssp ---HHH-TTSEEEEE-TTTTTTSSS-GGGGT-SEEEEETTSGGGTTT-SS--EEEEESHHHHHHHHHH
T ss_pred ---HhhCCCeEEEEeCCcceeccccCccccchhheeccceeCCCCCccCcC-CEEechHHHHHHHHhh
Confidence 012379999999999987777777788999999999996552 666 9999999998876543
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.6e-09 Score=109.37 Aligned_cols=310 Identities=12% Similarity=0.008 Sum_probs=169.2
Q ss_pred HHHHHHHHcCCCCCCceEEEcCChHH-HHHHHHhhcC-CCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCc
Q 010538 89 AREQVLDYFNASMKDYKCIFTSGATA-ALKLVGEAFP-WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDN 166 (508)
Q Consensus 89 ~r~~la~~~~~~~~~~~i~~t~g~t~-al~~~~~~l~-~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~ 166 (508)
....+-+.+|+.... ..++++-+|. .+.+.+.++. -+.++.|+.+..+|.|.+..+..+ |.+++.||....++.
T Consensus 61 l~~d~~~~~G~~~~~-~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai~~A---Gl~~~vV~~~~~~d~ 136 (389)
T PF05889_consen 61 LVLDALRLAGLRSVK-SCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFKAIERA---GLEPVVVENVLEGDE 136 (389)
T ss_dssp HHHHHHHHTTHTTHC-EEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHHHHHHT---T-EEEEE-EEEETTE
T ss_pred HHHHHHHHcCCcccc-ceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchHHHHHhc---CCeEEEeeccCCCCe
Confidence 334445567776431 4566666653 4555566653 235688999999998877665554 999999985432211
Q ss_pred cccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC-HHHHHHHHcCCccccccCCCCCCCeE
Q 010538 167 DGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN-LDLINIMKKNPERILEISPFSKGRWM 245 (508)
Q Consensus 167 ~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~-i~~i~~l~~~~~~~~~~~~~~~~g~~ 245 (508)
+.-|.+.++ +.+++ .++...+.++++.+-..|..-| +++|+++|++ +|++
T Consensus 137 ------------l~td~~~ie--~~i~~---~G~~~iLcvltttscfapr~~D~i~~IakiC~~------------~~IP 187 (389)
T PF05889_consen 137 ------------LITDLEAIE--AKIEE---LGADNILCVLTTTSCFAPRLPDDIEEIAKICKE------------YDIP 187 (389)
T ss_dssp ------------EEEHHHHHH--HHHHH---HCGGGEEEEEEESSTTTTB----HHHHHHHHHH------------HT--
T ss_pred ------------eeccHHHHH--HHHHH---hCCCCeEEEEEecCccCCCCCccHHHHHHHHHH------------cCCc
Confidence 111455565 44422 2456688888999999999999 9999999998 9999
Q ss_pred EEEeccccC---------------CCCCCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecc
Q 010538 246 VLIDAAKGC---------------VTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASI 310 (508)
Q Consensus 246 vivD~a~~~---------------g~~~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~ 310 (508)
.++.+|+++ |..|..++..+.||++.++||..+++ .+..+..+...|.|-.
T Consensus 188 hlvNnAYgvQ~~~~~~~i~~a~~~GRvda~vqS~dkNF~VPvGgai~As~--------~~~~i~~vs~~YpGRa------ 253 (389)
T PF05889_consen 188 HLVNNAYGVQSSKCMHLIQQAWRVGRVDAFVQSTDKNFMVPVGGAIMASF--------DPSGILAVSKEYPGRA------ 253 (389)
T ss_dssp EEEEGTTTTT-HHHHHHHHHHHHHSTCSEEEEEHHHHHCEESSHEEEEES--------SHHHHHHHHHTSHSHB------
T ss_pred eEEccchhhhHHHHHHHHHHHHhcCCcceeeeecCCCEEecCCCcEEEec--------CHHHHHHHHHHhhhhh------
Confidence 999999999 87766666666666666666644423 2344444444433211
Q ss_pred cchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCC
Q 010538 311 ADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSE 390 (508)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~ 390 (508)
..+| ..-+-..+..+...|+......-.++-.++.++|+++... -+-++...+.
T Consensus 254 -----------------s~sp----~ld~~itLl~LG~~g~~~ll~~r~~~f~~l~erl~~~aee---~~e~ll~~p~-- 307 (389)
T PF05889_consen 254 -----------------SASP----SLDLFITLLSLGCTGYGALLKERKASFPYLKERLKKWAEE---VGERLLETPR-- 307 (389)
T ss_dssp -----------------TSHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTEEBSSSTT--
T ss_pred -----------------hccc----chHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhcCCCC--
Confidence 0111 1112233444444455666666666666666666543210 1233332221
Q ss_pred cccCCCCceEEEEeeCCCCCc-cCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCC
Q 010538 391 VSYHDTGSMVSFNLKRPDGSW-FGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHG 469 (508)
Q Consensus 391 ~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 469 (508)
..-.+.|.++...... -+...+...|..+||.=.-+..+..... -.|. ..
T Consensus 308 -----N~is~a~tl~~l~~~~~k~~~~lgs~Lf~R~VsG~RvV~~~~~~~----------------tsh~--------~~ 358 (389)
T PF05889_consen 308 -----NHISMAFTLDTLYEISQKDGTFLGSMLFKRGVSGIRVVTPGGKKQ----------------TSHS--------SN 358 (389)
T ss_dssp ------SSEEEEE-TTCCTCCSSHHHHHHHHHHHTTEESSEEEETSSCEE----------------ETTS--------S-
T ss_pred -----CCeeEEEECccchhhccchhhhHHHHHHhCCcccceeeccCCCcc----------------cccC--------CC
Confidence 1344555555432211 0124588899888765111110110000 0010 11
Q ss_pred CCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 470 KPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 470 ~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
+...++-++-.+-.+.||||.+++.|+++++
T Consensus 359 yp~~Ylt~AsaiG~~~eevd~~v~rL~k~i~ 389 (389)
T PF05889_consen 359 YPCPYLTAASAIGMTREEVDYFVKRLDKIIK 389 (389)
T ss_dssp -SSSEEEEEE-TT--HHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 2357899988888999999999999998874
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.4e-08 Score=98.08 Aligned_cols=307 Identities=14% Similarity=0.132 Sum_probs=185.8
Q ss_pred hhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEcc
Q 010538 81 ATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDV 160 (508)
Q Consensus 81 ~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~ 160 (508)
.+.+..-+..+.+|+++|++.. |+...|-+ ++..++-++ .+.||.|++...-+-.+...++.. .-.+.....
T Consensus 136 Gt~DvHldlE~~iakF~G~E~a---ivYs~gF~-ti~S~ipaf-sKrGDIi~~de~~nfaIq~GlqlS---RS~i~~Fkh 207 (467)
T KOG1358|consen 136 GTIDVHLDLEKRIAKFMGTEDA---IVYSYGFS-TIESAIPAF-SKRGDIIFVDEAVNFAIQKGLQLS---RSTISYFKH 207 (467)
T ss_pred ccceeecccHHHHHHhhCCcce---eeeccccc-hhhhcchhh-hccCcEEEEehhhhHHHHHHHhhh---hheeEEecC
Confidence 3456666788999999999876 77777665 677788888 577899988875554444444433 334444444
Q ss_pred CCccCccccccccccccccccchhhhhcCCCCCCC---CCCCC---C-ceEEEEeCCCCCCccccCHHHHHHHHcCCccc
Q 010538 161 EEAVDNDGLSESLVTSTKISLLPIQRRKGASFPER---DPAGD---A-YNLFAFPSECNFSGSRFNLDLINIMKKNPERI 233 (508)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~---~~~~~---~-t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~ 233 (508)
++..++ + ..+.+. ...++ . -+.+++.-..-++|.+.|+.+|.++..+
T Consensus 208 ndm~~l--------------------e--rll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~pl~~iv~lk~K---- 261 (467)
T KOG1358|consen 208 NDMEDL--------------------E--RLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICPLPEIVKLKNK---- 261 (467)
T ss_pred CCHHHH--------------------H--HhccCcchhhhhccccccceEEEEEEeeccCCCcccccHHHHHHHhh----
Confidence 332211 1 111100 01111 2 3566777788889999999999999997
Q ss_pred cccCCCCCCCeEEEEeccccCCCCC---------CCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCc
Q 010538 234 LEISPFSKGRWMVLIDAAKGCVTQP---------PDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGG 304 (508)
Q Consensus 234 ~~~~~~~~~g~~vivD~a~~~g~~~---------~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~ 304 (508)
+...+++|...++|... +.+.--.+|++++|..-.++ -.| |++.+ +.++-..++. ++.
T Consensus 262 --------yk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~ala-s~G-gFc~G-~~~i~~hQrL--Sg~ 328 (467)
T KOG1358|consen 262 --------YKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALA-SGG-GFCAG-KSFIADHQRL--SGS 328 (467)
T ss_pred --------heEEEEEecccccccccccCccccccCCCCccceeeeeeccccccc-ccC-ceeec-ceeeEeeeec--ccc
Confidence 89999999998775432 22332358999999887777 333 55554 4333222322 111
Q ss_pred eEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEe
Q 010538 305 TVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIY 384 (508)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~ 384 (508)
.+-|....|+....+ ...++..+.+. ..+.+.++.....+...|+... ++.+.
T Consensus 329 ------------------~Y~fSAslPp~la~a-a~~ai~i~~~~--p~~~~~L~~k~~~~H~~l~~~s------~~~v~ 381 (467)
T KOG1358|consen 329 ------------------GYCFSASLPPYLAGA-AIKAILIEEWN--PEIVQPLRAKVAKFHAALSSNS------GFIVS 381 (467)
T ss_pred ------------------ceeeeccCchhhhhh-HHHHHHHHhhC--cchhhhhhccccccchhhhcCC------ceEEe
Confidence 222334445544333 33466655543 3466777777788888887763 67777
Q ss_pred cCCCCCcccCCCCceEEEEeeCCCCCccCH-----HHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCc
Q 010538 385 GTYTSEVSYHDTGSMVSFNLKRPDGSWFGY-----REVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHV 459 (508)
Q Consensus 385 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 459 (508)
+.+. ++++.+.+.+..+..=+. ..+.+.+.+ |+.+... ..++..+.
T Consensus 382 ~~~~--------SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~-~~ll~~a-----------------~~~~~~e~--- 432 (467)
T KOG1358|consen 382 GSPE--------SPIIHLQLERSYGSREKEEKLLEEIVDKCIAE-GVLLTRA-----------------KYLEKLER--- 432 (467)
T ss_pred cCcC--------CceeeeeecccccchHHHHHHHHHHHHHHHhh-cceehhh-----------------hhhhhccc---
Confidence 7654 799888887643321000 112223333 5555432 11111111
Q ss_pred cCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 460 CWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 460 ~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
| ..+..+||++..-.++||++++...+++..
T Consensus 433 ~---------~~~pSiri~~~a~~seeel~ra~~~ik~~~ 463 (467)
T KOG1358|consen 433 C---------PIPPSIRICVSAGMSEEELERAAELIKEVA 463 (467)
T ss_pred C---------CCCCcEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 1 124579999999999999999999988653
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3e-08 Score=98.55 Aligned_cols=354 Identities=14% Similarity=0.098 Sum_probs=199.9
Q ss_pred hccCCCCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEE
Q 010538 34 FKRLENGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCI 107 (508)
Q Consensus 34 f~~~~~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~ 107 (508)
|-..+++..|||.-+ .+-.+|.++.++.++. ...|.... .+ ...-..+.-+.++..+-.+-. .+.
T Consensus 43 ylyDe~G~ryLD~f~Gi~tvslGHchP~v~~a~~kQl-~~l~H~t~-~~-----~~~pi~~~Ae~L~s~~P~~l~--~vf 113 (442)
T KOG1404|consen 43 YLYDEEGRRYLDAFGGIVTVSLGHCHPDVVAAAVKQL-KKLYHTTS-GY-----LNPPIHDLAEALVSKLPGDLK--VVF 113 (442)
T ss_pred EEEcCCCceeehhhCCeEEEEcCCCChHHHHHHHHhh-hhhEEeec-cc-----cCCcHHHHHHHHHHhCCCCce--EEE
Confidence 444457899999743 4556899998887765 33332111 11 111233445666677776666 789
Q ss_pred EcCChHHHHHHHHhhcC--CCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC--------------ccCcccccc
Q 010538 108 FTSGATAALKLVGEAFP--WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE--------------AVDNDGLSE 171 (508)
Q Consensus 108 ~t~g~t~al~~~~~~l~--~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~--------------~~~~~~l~~ 171 (508)
|++++++|+.+++.... +..-+.|-....-|.+....+.. .|.....-+... .+.+.. +.
T Consensus 114 F~nsGsEANelal~mar~Yt~~~diIa~r~~YHG~t~~t~gl---t~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~-~~ 189 (442)
T KOG1404|consen 114 FVNSGSEANELALKMARLYTGNLDIIARRNSYHGNTLYTLGL---TGLSPWKQNFPGVASGVHHTMNPDPYRGIFGG-SN 189 (442)
T ss_pred EecCCchHHHHHHHHHHHhcCCceEEEeeccccCCchhhccc---ccCCcccccCCCCCCcccccCCCCcccccCCC-Cc
Confidence 99999999988766542 22223444444455444333221 111111111110 000000 00
Q ss_pred ccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCH----HHHHHHHcCCccccccCCCCCCCeEEE
Q 010538 172 SLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNL----DLINIMKKNPERILEISPFSKGRWMVL 247 (508)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i----~~i~~l~~~~~~~~~~~~~~~~g~~vi 247 (508)
.-.....+ .++++ +.+.. ........++...++..-|.+.+. ++..++|++ +|.++|
T Consensus 190 ~~e~~d~~---a~~l~--d~i~~--~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k------------~Ggl~I 250 (442)
T KOG1404|consen 190 EEEASDRY---AKELE--DLILY--DGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRK------------RGGLFI 250 (442)
T ss_pred hhhhHHHH---HHHHH--HHHHh--cCCCceeEEEeehhccCCccccCCchHHHHHHHHHHH------------cCCEEE
Confidence 00000111 12222 22211 112346777778888888888884 455566665 999999
Q ss_pred EeccccC-CCCC--CCCCCCC--CcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCc
Q 010538 248 IDAAKGC-VTQP--PDLSKYP--VDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGV 322 (508)
Q Consensus 248 vD~a~~~-g~~~--~d~~~~~--~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~ 322 (508)
.|++|+. |..- ..+...+ .|+++.+ |.+|+-.-+|.++..++...-+.......
T Consensus 251 aDEVqtGfGRtG~~wgfe~h~v~PDIvTmA--KgiGnG~Pl~AVvtt~EIa~v~~~~~~~f------------------- 309 (442)
T KOG1404|consen 251 ADEVQTGFGRTGHMWGFESHGVVPDIVTMA--KGIGNGFPLGAVVTTPEIADVLNQKSSHF------------------- 309 (442)
T ss_pred ehhhhhccccccccccccccCCCccHHHHH--hhccCCCcceeeecCHHHHHHHHhccccc-------------------
Confidence 9999874 2211 1222222 4777665 97773334899999999876554432111
Q ss_pred cccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEE
Q 010538 323 EELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSF 402 (508)
Q Consensus 323 ~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 402 (508)
+..|..+.+..+++ +.++.+.+ ++++++..+...||.+.|.++. ....++++-.. ++-++-+
T Consensus 310 ---nTyggnP~a~avg~-aVL~Vike---e~LqE~aa~vG~yl~~~l~~l~-----d~h~iIGdVRG------~GLm~Gv 371 (442)
T KOG1404|consen 310 ---NTYGGNPVACAVGL-AVLKVIKE---ENLQENAAEVGSYLLEKLAALK-----DKHPIIGDVRG------RGLMLGV 371 (442)
T ss_pred ---cccCCCchhHHHHH-HHHHHHHH---HhHHHHHHHHHHHHHHHHHHHh-----hcCCceeeccc------ceeEEEE
Confidence 11233333333333 46777665 7889999999999999998875 35566666543 2556666
Q ss_pred EeeCCC--CC---ccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEE
Q 010538 403 NLKRPD--GS---WFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRV 477 (508)
Q Consensus 403 ~~~~~~--~~---~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRi 477 (508)
.+-+-. .. +.--..+.+...++|+.+.-|. .....+||
T Consensus 372 E~V~dk~~~~pp~~~~~~~i~~~cke~Gvlvg~g~-------------------------------------i~G~vfri 414 (442)
T KOG1404|consen 372 ELVSDKSEPKPPATAEGAVIGEQCKELGVLVGKGG-------------------------------------IHGNVFRI 414 (442)
T ss_pred EEecccCCCCCcchHHHHHHHHHHHHhCeeeeccc-------------------------------------ccceEEEe
Confidence 653221 11 1111235666778899984432 23568999
Q ss_pred ecCCCCCHHHHHHHHHhh
Q 010538 478 SFGYMSTFEDAKVNRCSS 495 (508)
Q Consensus 478 s~~~~~t~eev~~l~~~~ 495 (508)
++-.-.|.||++.+++..
T Consensus 415 aPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 415 APPLCITKEDIDFAVEYF 432 (442)
T ss_pred cCCeeccHHHHHHHHHHH
Confidence 999999999998888765
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-07 Score=98.38 Aligned_cols=354 Identities=13% Similarity=0.076 Sum_probs=199.6
Q ss_pred CCCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC-CCCCCceEEEcC
Q 010538 38 ENGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN-ASMKDYKCIFTS 110 (508)
Q Consensus 38 ~~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~-~~~~~~~i~~t~ 110 (508)
.++.-|||.-++ +--.+.+.+++.++...--+..+... +..-..++-++++++.. .+-+ .|.|++
T Consensus 41 ~~G~r~lDg~sg~W~~~~Gh~~~~i~~Ai~~Q~~~l~~~~~~~~------t~~Pa~~LA~~L~~~aP~~~l~--~vFf~~ 112 (449)
T COG0161 41 IDGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLPHVMFGGF------THEPAIELAEKLAELAPEGGLD--HVFFTD 112 (449)
T ss_pred CCCCEEEecccHHHHhhcCcCCHHHHHHHHHHHHhCCchhhccc------CCchHHHHHHHHHHhCCCCCcc--EEEEeC
Confidence 367888887543 33367777777655432111222211 12224556677888887 4466 899999
Q ss_pred ChHHHHHHHHhhcC------CCCCC-eEEEe-cccccchHHHHHH------H-HhcC---CeEEEEccCC---ccCcccc
Q 010538 111 GATAALKLVGEAFP------WSHQS-SYMYT-MENHNSVLGIREY------A-LSQG---AAAFAIDVEE---AVDNDGL 169 (508)
Q Consensus 111 g~t~al~~~~~~l~------~~~g~-~vl~~-~~~h~s~~~~~~~------~-~~~G---~~v~~v~~~~---~~~~~~l 169 (508)
|+|+|+.+++.... -++.. ++|+- ..-|.+.+..... . ...+ ..+..+|... .....+-
T Consensus 113 sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~ 192 (449)
T COG0161 113 SGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEG 192 (449)
T ss_pred CchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCCCCC
Confidence 99999988775531 22333 35544 3444443332211 1 0011 1222332211 0000000
Q ss_pred ccccccccccccchhhhhcCCCCCCCCCCC-CCceEEEEeCCCCC-CccccCHH----HHHHHHcCCccccccCCCCCCC
Q 010538 170 SESLVTSTKISLLPIQRRKGASFPERDPAG-DAYNLFAFPSECNF-SGSRFNLD----LINIMKKNPERILEISPFSKGR 243 (508)
Q Consensus 170 ~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~-~~t~lv~~~~~~n~-tG~~~~i~----~i~~l~~~~~~~~~~~~~~~~g 243 (508)
..+.....++++ +.|.+ .+ ++...+++.-+... .|.++|.+ ++.++|++ ||
T Consensus 193 ------~~~~~~~a~~le--~~i~~---~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~k------------y~ 249 (449)
T COG0161 193 ------DEEFAEAADELE--ALILE---HGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDK------------YG 249 (449)
T ss_pred ------hHHHHHHHHHHH--HHHHh---cCcccEEEEEecccccccCCcccCChHHHHHHHHHHHH------------cC
Confidence 000012355666 55533 24 56677777666665 88888844 66666665 99
Q ss_pred eEEEEecccc-CCC-------CCCCCCCCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchh
Q 010538 244 WMVLIDAAKG-CVT-------QPPDLSKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADID 314 (508)
Q Consensus 244 ~~vivD~a~~-~g~-------~~~d~~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~ 314 (508)
+++|.|++-. +|. ...++ ..|+++.+ |.+.+- .-+|.++++++..+.+..-. .+ .
T Consensus 250 ILlI~DEV~tGFGRTG~~FA~e~~gi---~PDi~~~a--KGLT~GY~Pl~a~l~~~~I~~~~~~~~-~~-~--------- 313 (449)
T COG0161 250 ILLIADEVATGFGRTGKMFACEHAGI---VPDILCLA--KGLTGGYLPLSAVLTSDRIYEAFSDGD-AG-A--------- 313 (449)
T ss_pred cEEEeecceeCCCcCchhhhhhhcCC---CCCeeeec--ccccccchhhHhHhhhHHHHHHHhccc-CC-e---------
Confidence 9999998853 332 22232 37999988 854411 11788999998876554321 11 0
Q ss_pred hhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhc-ccCCCCCceEEEecCCCCCccc
Q 010538 315 FVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLS-LRHENGADVCTIYGTYTSEVSY 393 (508)
Q Consensus 315 ~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~-l~~~~~~~~~~~~~~~~~~~~~ 393 (508)
| .-.+. -+-|..+.++..+.++.+.+ +.+.++..++..+|.+.|++ +. +...+++-..
T Consensus 314 f-------~HG~T-YsghPlacAaAla~L~i~e~---e~l~~~~~~~~~~l~~~L~~~l~------~~p~VgdVR~---- 372 (449)
T COG0161 314 F-------MHGHT-YSGNPLACAAALANLDILEE---EDLLERVAEIGAYLQAGLQAALA------DHPLVGDVRG---- 372 (449)
T ss_pred e-------ccCCc-cccCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHhcc------cCCcEEEeec----
Confidence 0 00000 12233333334445666655 56678888999999999987 32 1223333221
Q ss_pred CCCCceEEEEeeCCCCCc--c---CHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccC
Q 010538 394 HDTGSMVSFNLKRPDGSW--F---GYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIH 468 (508)
Q Consensus 394 ~~~~~~v~~~~~~~~~~~--~---~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 468 (508)
.+-+..+.+....+.. + -...+.+.+.++|+.+|+.
T Consensus 373 --~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~Gl~iRp~------------------------------------- 413 (449)
T COG0161 373 --LGLIGAIELVADKATKTPFEARVGARVRAAALERGLLIRPL------------------------------------- 413 (449)
T ss_pred --cceEEEEEEecccccccchhhhHHHHHHHHHHHCCeEEeec-------------------------------------
Confidence 2566666765332211 1 0234777888999999984
Q ss_pred CCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 469 GKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 469 ~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
.+.+=+++-+-.|.+|++++++.+.+-++-
T Consensus 414 ---g~~i~~~PPliit~~eid~l~~~l~~al~~ 443 (449)
T COG0161 414 ---GDVIYLMPPLIITREEIDELVDALREALDE 443 (449)
T ss_pred ---CCEEEEcCCccCCHHHHHHHHHHHHHHHHH
Confidence 347888888899999999999999988764
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.6e-07 Score=97.55 Aligned_cols=262 Identities=11% Similarity=0.010 Sum_probs=137.6
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+ .+--+|.+++++.++. .... ..... .....++.+++++++.. .+ .+.|++++
T Consensus 46 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~-~~~~---~~~~~-----~~~~~~la~~l~~~~p~-~~--~v~f~~sG 113 (431)
T PRK06209 46 DGNEYIEYGMGLRAVGLGHAYPPVVEAVREAL-QDGC---NFTRP-----SAIELDAAESFLELIDG-AD--MVKFCKNG 113 (431)
T ss_pred CCCEEEEccccccchhcCCCCHHHHHHHHHHH-HhCc---CCCCC-----CHHHHHHHHHHHHhCCc-cc--eEEEecCH
Confidence 6788999743 3455888888876654 3221 11111 11222445666676642 24 79999999
Q ss_pred HHHHHHHHhhcC-CCCCCeEEEe-cccccchHHHHHHHHhcCCeEEE--Ecc---CCccCccccccccccccccccchhh
Q 010538 113 TAALKLVGEAFP-WSHQSSYMYT-MENHNSVLGIREYALSQGAAAFA--IDV---EEAVDNDGLSESLVTSTKISLLPIQ 185 (508)
Q Consensus 113 t~al~~~~~~l~-~~~g~~vl~~-~~~h~s~~~~~~~~~~~G~~v~~--v~~---~~~~~~~~l~~~~~~~~~~~~d~~~ 185 (508)
|+|+..++.... ..+...|+.. ...+-+...|.. |..... ++. ....... -.|++.
T Consensus 114 seA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~------------~~d~~~ 176 (431)
T PRK06209 114 SDATSAAVRLARAYTGRDLVARCADHPFFSTDDWFI-----GTTPMSAGIPASVSALTVTFR------------YNDIAS 176 (431)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEeccCcccccccccc-----ccCCCCCCCChhHhccccccC------------CCCHHH
Confidence 999988776432 2334455544 111111111111 111000 000 0000000 013566
Q ss_pred hhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCC--CC-
Q 010538 186 RRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPD--LS- 262 (508)
Q Consensus 186 l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d--~~- 262 (508)
++ +.+++ ..+++..|++..+....+..-.+++|.++|++ +|+++|+|++|. |....- ..
T Consensus 177 l~--~~l~~---~~~~~aavi~Epv~g~~~~~~~l~~l~~lc~~------------~g~lLI~DEv~t-G~~~~~~g~~~ 238 (431)
T PRK06209 177 LE--ALFED---HPGRIACVILEPATADEPQDGFLHEVRRLCHE------------NGALFILDEMIT-GFRWHMRGAQK 238 (431)
T ss_pred HH--HHHHh---CCCCEEEEEEccccCCCCCHHHHHHHHHHHHH------------cCCEEEEEcccc-cCCcCcchhhH
Confidence 66 55532 12456777776654443333336777777776 999999999984 332110 11
Q ss_pred --CCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccc-cCC--CCChhHHH
Q 010538 263 --KYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELF-EDG--TASFLSIA 337 (508)
Q Consensus 263 --~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~g--t~~~~~~~ 337 (508)
....|++++ .|.+|+-.-+|++..++++.+.+....... ...+ ..+ ++|...++
T Consensus 239 ~~gv~PDi~t~--gK~lggG~p~~av~~~~~i~~~~~~~~~~~-------------------~~~~~~~~T~~~np~~~a 297 (431)
T PRK06209 239 LYGIVPDLSCF--GKALGNGFAVSALAGKREYMELGGLEHTDR-------------------ERVFLLSTTHGAETHALA 297 (431)
T ss_pred HhCCCcceeee--hhhhcCCcccEEEEEHHHHHhhhcccccCC-------------------CCceeeccCCCCCHHHHH
Confidence 124687665 597774111688888887765311000000 0001 112 34566788
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhc
Q 010538 338 SIRHGFNLINSLTVPAICRHIASLGMYVRKVLLS 371 (508)
Q Consensus 338 ~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~ 371 (508)
+..++++.+.+. .+.++..++.++|++.|++
T Consensus 298 aa~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~ 328 (431)
T PRK06209 298 AAIATMAIYRDE---DVIERLHEQGAKLAAGVNE 328 (431)
T ss_pred HHHHHHHHHhcc---CHHHHHHHHHHHHHHHHHH
Confidence 888889988764 3567777777777777755
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.2e-08 Score=94.69 Aligned_cols=292 Identities=11% Similarity=0.042 Sum_probs=148.9
Q ss_pred hHHHHHHHHHHHHHcC-CCCCCceEEEcCChHHHHHHHHhhcCCC---C--CCeEEEecccccchHHHHHHHHhcCCeEE
Q 010538 83 CDIVRAAREQVLDYFN-ASMKDYKCIFTSGATAALKLVGEAFPWS---H--QSSYMYTMENHNSVLGIREYALSQGAAAF 156 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~-~~~~~~~i~~t~g~t~al~~~~~~l~~~---~--g~~vl~~~~~h~s~~~~~~~~~~~G~~v~ 156 (508)
....++..+++=+.+| +-.+++.|+|..|+|+.++.++-+|.-. . -..|+....-||++.....++.... .+
T Consensus 45 s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f~s~~--y~ 122 (363)
T PF04864_consen 45 SPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFFDSRL--YK 122 (363)
T ss_dssp -HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT-BTT--EE
T ss_pred cHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhccccC--cc
Confidence 4445555555656666 4555679999999999999999988422 1 2368888877776654443332111 11
Q ss_pred EEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCcccccc
Q 010538 157 AIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEI 236 (508)
Q Consensus 157 ~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~ 236 (508)
+ .++. ..+. ...++.+-+=+++++|||.|.+- ..+++.
T Consensus 123 w-----~Gda-----------------~~~~--------~~~~~~~~IElVTSPNNPDG~lr-----~~V~~g------- 160 (363)
T PF04864_consen 123 W-----AGDA-----------------SNFK--------NSDNPSPYIELVTSPNNPDGQLR-----EAVLNG------- 160 (363)
T ss_dssp E-----EEEC-----------------CCGT--------T-S-CCGEEEEEESS-TTT-----------SSTT-------
T ss_pred c-----cccH-----------------Hhhc--------cCCCCCCeEEEEeCCCCCccccc-----chhcCC-------
Confidence 1 1211 1111 11124456667899999999763 123343
Q ss_pred CCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHh-hhccccccCceEEecccch
Q 010538 237 SPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAK-LLKNTYFSGGTVAASIADI 313 (508)
Q Consensus 237 ~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~~~ 313 (508)
.+..+|.|-++..++--.--...+-|+..++.+|.-| -+| +||.+++++... ++...+. -
T Consensus 161 -----~~~k~I~D~AYYWPhyTpI~~~aD~DiMLFT~SK~TG-HAGSR~GWAlVKD~~Va~kM~~y~~-l---------- 223 (363)
T PF04864_consen 161 -----SSGKVIHDLAYYWPHYTPITAPADHDIMLFTLSKLTG-HAGSRFGWALVKDEEVAKKMTKYME-L---------- 223 (363)
T ss_dssp -----TEEEEEEE-TT-STTTS---S-B--SEEEEEHHHHCS--GGG-EEEEEES-HHHHHHHHHHHH-H----------
T ss_pred -----CCcceeeeeeeecccccccCCCCCCceEEEEEecccC-ccccccceeeecCHHHHHHHHHHHH-H----------
Confidence 6788999999998765333334577999999999777 667 899999987643 2322210 0
Q ss_pred hhhhhccCccccccCCCCChhHHHHHHHHHHHHH-------------hcChHHHHHHHHHHHHHHHHHHhcccCCCCCce
Q 010538 314 DFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN-------------SLTVPAICRHIASLGMYVRKVLLSLRHENGADV 380 (508)
Q Consensus 314 ~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~-------------~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~ 380 (508)
...|..--.++-++. -|+.+. +.|.+.+.+|-.+|++ .+.+.. .
T Consensus 224 ------------nTiGvS~dsQLRa~k-iLk~v~~~~~~~~~~~~~F~f~~~~M~~RW~~L~~----~~~~S~------r 280 (363)
T PF04864_consen 224 ------------NTIGVSRDSQLRALK-ILKVVLDGYGTEKGTEDIFHFGYSTMRERWEKLRA----AVSASK------R 280 (363)
T ss_dssp ------------HCSS--HHHHHHHHH-HHHHHHHHCCHHTTTTSHHHHHHHHHHHHHHHHHH----HHCCSS------S
T ss_pred ------------hcccCcHHHHHHHHH-HHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHH----HHHhcC------c
Confidence 001111111111111 111111 1122333333333333 333221 1
Q ss_pred EEEecCCC--C-C--cccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhh
Q 010538 381 CTIYGTYT--S-E--VSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIE 455 (508)
Q Consensus 381 ~~~~~~~~--~-~--~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~ 455 (508)
+.+-.-+. . + -.....+.+.|++....+.. +....|++.||..+.|..|..
T Consensus 281 FSLq~~~~~yC~ff~~~~~psPafAWlkCe~eed~-----DC~~~l~~~~I~tr~G~~fga------------------- 336 (363)
T PF04864_consen 281 FSLQKFSPQYCNFFKRVREPSPAFAWLKCEREEDE-----DCYAVLREAKIITRSGVLFGA------------------- 336 (363)
T ss_dssp EEE---SCEEETTTTCEEE---SEEEEEESSCGGS-----SHHHHHHCTTEEEEEGGGGTS-------------------
T ss_pred eecCcCCchhccccccccCCCCCeEEEecCCcccc-----cHHHHHHhCCcccCCCCccCC-------------------
Confidence 22211100 0 0 00011368899998754322 278899999999999975433
Q ss_pred cCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 456 AGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
...++|+|+- .+.++.+-|++.|..+|
T Consensus 337 ---------------~~ryVRlSml--~~~d~Fd~l~~rL~~lv 363 (363)
T PF04864_consen 337 ---------------DSRYVRLSML--KRDDDFDQLLERLSKLV 363 (363)
T ss_dssp ----------------TTEEEEESS--S-HHHHHHHHHHHHCCH
T ss_pred ---------------CCCeEEEecc--CCHHHHHHHHHHHHhhC
Confidence 2679999987 49999999999988764
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.9e-07 Score=93.20 Aligned_cols=321 Identities=12% Similarity=0.046 Sum_probs=202.1
Q ss_pred chhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHH-H---HHHHHhhcCCCC----CCeEEEecccccchHHHHHHH
Q 010538 77 DISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATA-A---LKLVGEAFPWSH----QSSYMYTMENHNSVLGIREYA 148 (508)
Q Consensus 77 ~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~-a---l~~~~~~l~~~~----g~~vl~~~~~h~s~~~~~~~~ 148 (508)
.......+++..+.+.+.++.|.+. +.|.+++-. + =..+++++.... ..+.+++-..|.+.-+.+.++
T Consensus 575 eQaqGY~~lf~~Le~~Lc~iTG~D~----~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNPASA~Ma 650 (1001)
T KOG2040|consen 575 EQAQGYQQLFTELEKDLCEITGFDS----FSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNPASAAMA 650 (1001)
T ss_pred HHHhhHHHHHHHHHHHhheeecccc----eeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCChhhHHhc
Confidence 3445567888888899999988863 456544332 1 123444443332 356788888887777666665
Q ss_pred HhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCcccc-CHHHHHHHH
Q 010538 149 LSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRF-NLDLINIMK 227 (508)
Q Consensus 149 ~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~-~i~~i~~l~ 227 (508)
|.+|+.|..+.++.+ |..+++ +..++ ..++...+.++.+++. |..- .+++++++.
T Consensus 651 ---gmkvvpV~~~~~G~i---------------d~~dLk--~kaek---h~~~Laa~MvTYPST~-GvfE~~i~d~cd~i 706 (1001)
T KOG2040|consen 651 ---GMKVVPVGCDANGNI---------------DMVDLK--AKAEK---HKDNLAALMVTYPSTH-GVFEEGIDDICDII 706 (1001)
T ss_pred ---CCEEEEeeccCCCCc---------------cHHHHH--HHHHH---hhhhhheeEEeccccc-ccccccHHHHHHHH
Confidence 999999999888888 455665 33322 3456778888887665 5544 499999999
Q ss_pred cCCccccccCCCCCCCeEEEEecccc---CC-CCCCCCCCCCCcEEEEeccccccCCCc-----ceEEEEechhHhhhcc
Q 010538 228 KNPERILEISPFSKGRWMVLIDAAKG---CV-TQPPDLSKYPVDFVVMSFYKIFGYPTG-----LGALIMRNDAAKLLKN 298 (508)
Q Consensus 228 ~~~~~~~~~~~~~~~g~~vivD~a~~---~g-~~~~d~~~~~~D~~~~S~~K~~g~P~G-----~G~l~~~~~~~~~l~~ 298 (508)
|+ ||--|..||+.- +| +.| ..+|.|+.-...||+|+-|.| +|=+-+++.+ .|
T Consensus 707 He------------hGGQVYlDGANMNAqVGlc~p---Gd~GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~HL----ap 767 (1001)
T KOG2040|consen 707 HE------------HGGQVYLDGANMNAQVGLCRP---GDIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHL----AP 767 (1001)
T ss_pred Hh------------cCCEEEecCCCccceecccCC---ccccccceeecccceeeecCCCCCCCCCccchhhhc----cc
Confidence 98 999999999843 22 233 344689999999998874543 5666666654 44
Q ss_pred ccccCceEEecccchhhhhhccCccccccCCCC---Ch--hHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcc
Q 010538 299 TYFSGGTVAASIADIDFVKRRQGVEELFEDGTA---SF--LSIAS-IRHGFNLINSLTVPAICRHIASLGMYVRKVLLSL 372 (508)
Q Consensus 299 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~---~~--~~~~~-l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l 372 (508)
...+...++... .......|+. ++ ..+.. -++-++++...|+..-.+-..-.++|+.++|+..
T Consensus 768 fLP~HpVvs~~~-----------~~~~~~~gsVsaaP~Gsa~ILpISwaYikmMG~~GL~~as~~AiLNaNYMakRLe~h 836 (1001)
T KOG2040|consen 768 FLPSHPVVSPGR-----------PEDTSPVGSVSAAPWGSALILPISWAYIKMMGSGGLKDASKIAILNANYMAKRLESH 836 (1001)
T ss_pred cCCCCCccCCCC-----------CCCCCCccceeccCCCcceeehhHHHHHHHhcccccchhhHHHhhhhHHHHHHHhhc
Confidence 433322111000 0000001110 01 11112 2445778888888888888888899999999875
Q ss_pred cCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCC-CccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhh
Q 010538 373 RHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDG-SWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLL 451 (508)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~ 451 (508)
. .+-+.++.+. -.+-+.+++...+. ..+..-+++++|.+.|...-+=+ +-
T Consensus 837 Y------kil~~~~~~~------vaHEFIlD~r~fK~~agieavDvAKRL~DYgFHaPTms-wP---------------- 887 (1001)
T KOG2040|consen 837 Y------KILFRGENGL------VAHEFILDLRPFKKTAGIEAVDVAKRLMDYGFHAPTMS-WP---------------- 887 (1001)
T ss_pred c------ceeEecCCcc------eeeeeeeechhhccccCCcHHHHHHHHHhccCCCCccc-cc----------------
Confidence 2 2222233321 12223334333322 22566789999999998843311 10
Q ss_pred hhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhh
Q 010538 452 SNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~ 503 (508)
..|++=|-+.-.-+.+|+|+++++|-.+-+.++
T Consensus 888 -------------------V~gtLMIEPTESE~k~ElDRfcdAliSIreEI~ 920 (1001)
T KOG2040|consen 888 -------------------VAGTLMIEPTESEDKAELDRFCDALISIREEIA 920 (1001)
T ss_pred -------------------cCCceEeccCccccHHHHHHHHHHHHHHHHHHH
Confidence 267888888888899999999999987766554
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.8e-06 Score=95.45 Aligned_cols=218 Identities=11% Similarity=0.063 Sum_probs=130.3
Q ss_pred CCceEEEEeCC-CCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC-CCCC----CCCCCCCCcEEEEec
Q 010538 200 DAYNLFAFPSE-CNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC-VTQP----PDLSKYPVDFVVMSF 273 (508)
Q Consensus 200 ~~t~lv~~~~~-~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~-g~~~----~d~~~~~~D~~~~S~ 273 (508)
+++..|++.-+ +...|.+.|-+...+.+++ +|+++|+++|.|+++.. |..- .+......|+++++
T Consensus 583 ~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~--------lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv~PDIi~~g- 653 (817)
T PLN02974 583 GHIAALIIEPVLHGAGGMLLIDPLFQRALVQ--------VCRSRKIPVIFDEVFTGLWRLGVESAWELLGCKPDIACYA- 653 (817)
T ss_pred CCEEEEEEeccccCCCCcccCCHHHHHHHHH--------HHHHhCCEEEEeecccCCCcccchhhHHhcCCCCCEEeec-
Confidence 46788888774 6777888874433333333 44459999999999863 2221 11112247999998
Q ss_pred cccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCC--CCChhHHHHHHHHHHHHHhcC
Q 010538 274 YKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDG--TASFLSIASIRHGFNLINSLT 350 (508)
Q Consensus 274 ~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g--t~~~~~~~~l~~al~~~~~~g 350 (508)
|.+++- .-+|.++++++..+.+...-.. ...+..+ +-|..+.++..++++++.+.+
T Consensus 654 -KgLtgG~~Plaa~l~~~~I~~~f~~~~~~--------------------~~~~hg~Ty~gnpl~cAaala~L~~~~~~~ 712 (817)
T PLN02974 654 -KLLTGGLVPLAATLATEEVFEAFRGPSKL--------------------DALLHGHSYTAHPMGCAAAAKALQWYKDPS 712 (817)
T ss_pred -ccccCCCCccEEEEEcHHHHHhhcccccc--------------------CCcccCCCCCcCHHHHHHHHHHHHHHHccc
Confidence 965521 1279999999987655311000 0000111 234556666667788876642
Q ss_pred -hHHHHHHHHHHHHHHHHHHh-cccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCC-ccC---HHHHHHHHh-h
Q 010538 351 -VPAICRHIASLGMYVRKVLL-SLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGS-WFG---YREVEKLAS-L 423 (508)
Q Consensus 351 -~~~i~~~~~~l~~~l~~~L~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~---~~~l~~~L~-~ 423 (508)
.+.+.++..++.+++.+.|. .+.. .+.+.-+ . -.+.++.+.+.+.... .+. ...+.+.+. +
T Consensus 713 ~~~~l~~~~~~l~~~l~~~l~~~l~~---~p~V~~V---R------g~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~ 780 (817)
T PLN02974 713 TNPNLIPPGSRLRELWDEELVRAISS---LPNVERV---V------SLGTVLALELDAEGSGSGYSSLYARSVVRRLRRE 780 (817)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh---CCCeeEE---E------eeeeEEEEEEecCCcccccchHHHHHHHHHHHHh
Confidence 24556666666666666662 2210 0222111 1 1267788887542211 111 134666677 8
Q ss_pred CCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 424 SGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 424 ~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
+|+.+++. .+.||+.+.+.++.+|++++++.|.+-+
T Consensus 781 ~Gl~~r~~----------------------------------------Gnvi~l~pP~~i~~e~l~~~~~~l~~~~ 816 (817)
T PLN02974 781 DGIYARPL----------------------------------------GNVVYLMCGPTTSPETCTRLLRKVYRRL 816 (817)
T ss_pred CCEEEEec----------------------------------------CCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 99998762 3689999999999999999999987643
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.5e-06 Score=88.99 Aligned_cols=269 Identities=13% Similarity=0.089 Sum_probs=150.7
Q ss_pred CCCeeeeCC------CCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHA------GATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|.. ..+--+|.+.+++.+....-.+..+. .. ......++-+++.+.++-..+ .+.|++|+
T Consensus 14 dG~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~~~~~~~~-~~-----~~~~~~~la~~L~~~~p~~~~--~v~f~~sG 85 (339)
T PF00202_consen 14 DGREYLDFMSGYGSVNLGHNHPEIAEAIAEQANKLNYVSFS-GF-----THPEAAELAEKLAELFPGGLD--RVFFANSG 85 (339)
T ss_dssp TSEEEEESSHHHHTTTT-BT-HHHHHHHHHHHHHCSSCSTT-TS-----EEHHHHHHHHHHHHHSSTTEE--EEEEESSH
T ss_pred CCCEEEECCCCccceecCCCccccchhHHHHhhhccccccc-ce-----eccchhhhhhhhhhccccccc--eeeeccCc
Confidence 677788884 33444788887765543221111111 11 223455667778888854444 89999999
Q ss_pred HHHHHHHHhhcC------C-CCCCeEEEecccccc-hHHHHHH-----HHh-cC---CeEEEEccCCccCcccccccccc
Q 010538 113 TAALKLVGEAFP------W-SHQSSYMYTMENHNS-VLGIREY-----ALS-QG---AAAFAIDVEEAVDNDGLSESLVT 175 (508)
Q Consensus 113 t~al~~~~~~l~------~-~~g~~vl~~~~~h~s-~~~~~~~-----~~~-~G---~~v~~v~~~~~~~~~~l~~~~~~ 175 (508)
++|+..++.... . .....|+.....|-. ....... .+. .+ ..+..+|....... .. ....
T Consensus 86 seAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~--~~~~ 162 (339)
T PF00202_consen 86 SEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAAD-EE--EQAC 162 (339)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHH-HH--HHHH
T ss_pred hHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccchh-hh--HHHH
Confidence 999988776653 1 234567766544433 3333221 111 11 23455555432110 00 0000
Q ss_pred ccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecc
Q 010538 176 STKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAA 251 (508)
Q Consensus 176 ~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a 251 (508)
... ..+.+. ....+++..|++.-+....|.+.+ +++|.++|++ +|+++|+|++
T Consensus 163 ~~~---~~~~~~--------~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~------------~gillI~DEV 219 (339)
T PF00202_consen 163 LNA---LEELIA--------ALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCRE------------HGILLIADEV 219 (339)
T ss_dssp HHH---HHHHHH--------HHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHH------------TT-EEEEEET
T ss_pred HHH---HHHHHH--------hhcCCcEEEEEEeccccccCccccccchhhehcccccc------------cccceecccc
Confidence 000 011111 111456788888888888888776 3455555665 9999999999
Q ss_pred ccC-CCCCCCC----CCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccc
Q 010538 252 KGC-VTQPPDL----SKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELF 326 (508)
Q Consensus 252 ~~~-g~~~~d~----~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 326 (508)
++. |..-.-+ .....|+++++ |.+++-.-+|.+++++++.+.+.+...
T Consensus 220 ~tG~gRtG~~~a~~~~gv~PDiv~~g--K~l~gG~p~sav~~~~~i~~~~~~~~~------------------------- 272 (339)
T PF00202_consen 220 QTGFGRTGKFFASEHYGVDPDIVTFG--KGLGGGLPISAVLGSEEIMEAFQPGSH------------------------- 272 (339)
T ss_dssp TTTTTTTSSSSGHHHHTSSSSEEEEE--GGGGTTSSEEEEEEEHHHHTTSCTTSS-------------------------
T ss_pred cccccccCCccceecccccCcccccc--cchhhhhhcccccccchhhcccccccc-------------------------
Confidence 874 3222111 12357999998 966632338999999998765544321
Q ss_pred cCCC--CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcc
Q 010538 327 EDGT--ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSL 372 (508)
Q Consensus 327 ~~gt--~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l 372 (508)
.+| -+..++++..++++.+.+ +++.++..++.++|.+.|+++
T Consensus 273 -~~T~~g~p~~~aaa~~~l~~~~~---~~~~~~~~~~g~~l~~~L~~l 316 (339)
T PF00202_consen 273 -GSTFGGNPLSCAAALATLEILEE---EDLLERVRELGERLREGLREL 316 (339)
T ss_dssp -TCTTTT-HHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHH
T ss_pred -ccccccchHhhhhhhhHHHhhcc---HHHHHHHHHHHHHHHHHHHHH
Confidence 122 234456666667777766 345677788888888887765
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.1e-06 Score=88.88 Aligned_cols=298 Identities=13% Similarity=0.104 Sum_probs=177.9
Q ss_pred HHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHH-HHhcCCeEEEEccCCccCcc
Q 010538 89 AREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREY-ALSQGAAAFAIDVEEAVDND 167 (508)
Q Consensus 89 ~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~-~~~~G~~v~~v~~~~~~~~~ 167 (508)
-...++++.|.+.. .-.+..-+|.|-..+..+.....+.++++....||..+...+. ++.+|+++...+...
T Consensus 168 yQTmi~dlTGL~~a--NASLLDEgTAaaEAm~l~~~~~krkk~vvd~~~hpqtlsV~~TRa~~~~i~v~~~~~~~----- 240 (1001)
T KOG2040|consen 168 YQTMITDLTGLPMA--NASLLDEGTAAAEAMALCNRINKRKKFVVDSNCHPQTLSVVKTRAKGFGIKVVVSDIKE----- 240 (1001)
T ss_pred hHHhhhhccCCccc--chhhhccchhHHHHHHHHHhhcccceEEecCCCCcchhhhhhccccccceeEEecCHHH-----
Confidence 45678899998876 5555556666666655555555667799999999988776653 333555544433211
Q ss_pred ccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEE
Q 010538 168 GLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVL 247 (508)
Q Consensus 168 ~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vi 247 (508)
.. ...+...-+.+..+. ..|.+.|.+++.+.++. .|..++
T Consensus 241 ------------------~~---------~s~~~v~gvlvQYP~-t~G~i~d~~el~~~a~~------------~~s~vv 280 (1001)
T KOG2040|consen 241 ------------------AD---------YSSKDVSGVLVQYPD-TEGSVLDFDELVELAHA------------NGSLVV 280 (1001)
T ss_pred ------------------hh---------ccccceeEEEEEcCC-CCCcccCHHHHHHHhhc------------cCceEE
Confidence 11 002345666666654 46999999999999997 666654
Q ss_pred EeccccCCCCCCCCCCCCCcEEEEeccccccCCCc-----ceEEEEechhHhhhccccccCceEEecccchhhh--hhcc
Q 010538 248 IDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG-----LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFV--KRRQ 320 (508)
Q Consensus 248 vD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G-----~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~--~~~~ 320 (508)
+-.---.-++--+..++|+|+.++|.+. ||.|-| .||+.+++++...+.-.+.|-. ........+- ....
T Consensus 281 ~atDLLaLtiLrpPgefGaDIavGSsQR-FGVPlGYGGPHAaFfAv~~~l~R~mPGRiiGvt--kD~~gk~a~RLALQTR 357 (1001)
T KOG2040|consen 281 MATDLLALTILRPPGEFGADIAVGSSQR-FGVPLGYGGPHAAFFAVSESLVRMMPGRIIGVT--KDALGKEAYRLALQTR 357 (1001)
T ss_pred EeehhhHHHccCChhhcCceeeeccccc-cCccccCCCchHHHHHHHHHHHhhCCCceEeee--ecccccHHHHHHHHHH
Confidence 4321111222233457789999999998 444544 4666666665433332322210 0001111111 1111
Q ss_pred CccccccCCCCChhHHHHHHH----HHH-HHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCC
Q 010538 321 GVEELFEDGTASFLSIASIRH----GFN-LINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHD 395 (508)
Q Consensus 321 ~~~~~~~~gt~~~~~~~~l~~----al~-~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~ 395 (508)
.+.-++.-.|.|+-..-++-+ ... ++...|++.|.+|+..++-+|...|++. +-++....-
T Consensus 358 EQHIrRDKATSNICTAQALLANmaAmyaiYHGp~gL~~IArrvh~~T~~l~~~l~~a-------ghel~~k~f------- 423 (1001)
T KOG2040|consen 358 EQHIRRDKATSNICTAQALLANMAAMYAIYHGPHGLKEIARRVHNLTLILAEGLKNA-------GHELQHKPF------- 423 (1001)
T ss_pred HHHhhhhccchhhhHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHhhc-------chhhccccc-------
Confidence 223445566777643333221 111 3344589999999999999999999886 556654421
Q ss_pred CCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceE
Q 010538 396 TGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAI 475 (508)
Q Consensus 396 ~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i 475 (508)
--.+.+++.. . ..++.....+++|-++.- .++.|
T Consensus 424 -FDTLkI~~~~-s-----~~~~l~rA~~~~iNlr~~---------------------------------------ed~ti 457 (1001)
T KOG2040|consen 424 -FDTLKIRCGC-S-----AEEVLDRAAKRQINLRLV---------------------------------------EDGTI 457 (1001)
T ss_pred -cceEEEEecC-c-----HHHHHHHHHhhcCceEEe---------------------------------------ecCce
Confidence 2234444433 1 223566666667776641 26789
Q ss_pred EEecCCCCCHHHHHHHHHhhh
Q 010538 476 RVSFGYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 476 Ris~~~~~t~eev~~l~~~~~ 496 (508)
-+|+---.+.+|++.|+..+.
T Consensus 458 gvslDETv~~~DvddLl~vf~ 478 (1001)
T KOG2040|consen 458 GVSLDETVTEKDVDDLLWVFN 478 (1001)
T ss_pred EEeecccccHHHHHHHHHHHc
Confidence 999988899999999987754
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2e-06 Score=82.82 Aligned_cols=180 Identities=13% Similarity=0.052 Sum_probs=122.5
Q ss_pred hhHHHH-HHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHH-H-------HHHHHhcC
Q 010538 82 TCDIVR-AAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLG-I-------REYALSQG 152 (508)
Q Consensus 82 ~~~~~~-~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~-~-------~~~~~~~G 152 (508)
..++-+ .+.+-.|+.+|++..--..-|. ++|+|+..++.++ ++|||+++.--..-...+. . ...+..+|
T Consensus 62 ydD~GRdtLe~vyA~vf~aE~a~VRpq~i-sGTHAI~~aLfg~-LRpgDell~i~G~PYDTLeevIG~rg~~~gSL~dfg 139 (416)
T COG4100 62 YDDLGRDTLERVYAQVFGAEAALVRPQII-SGTHAIACALFGI-LRPGDELLYITGSPYDTLEEVIGLRGEGQGSLKDFG 139 (416)
T ss_pred ccccchhHHHHHHHHHhccccceeeeeee-cchhHHHHHHHhc-cCCCCeEEEecCCcchhHHHHhccCCCCcccHHHhC
Confidence 334333 3556679999998761122333 5677999999998 7999998876543332221 1 12355678
Q ss_pred CeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCC----CCCCccccCHHHHHHHHc
Q 010538 153 AAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSE----CNFSGSRFNLDLINIMKK 228 (508)
Q Consensus 153 ~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~----~n~tG~~~~i~~i~~l~~ 228 (508)
++.+.||+..++.+ |.+.++ .+ ++++||+|.+.-. .-|+=.+.+++++...+|
T Consensus 140 i~Y~~v~Lt~~gki---------------D~~~v~--~~------i~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk 196 (416)
T COG4100 140 IKYKAVPLTADGKI---------------DIQAVK--TA------ISDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVK 196 (416)
T ss_pred cceeecccccCCcc---------------cHHHHH--Hh------cCccceEEEEEeccCcCCCCcccHHHHHHHHHHHH
Confidence 99999999888888 678888 44 4689999988542 223333444555566666
Q ss_pred CCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccC-CCc-ceEEEEechhHhhh
Q 010538 229 NPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGY-PTG-LGALIMRNDAAKLL 296 (508)
Q Consensus 229 ~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~-P~G-~G~l~~~~~~~~~l 296 (508)
+ .+.+++++||.+++--.........++|++.+|+=|.-|| -.- -|++..+.++.+..
T Consensus 197 ~----------inpn~ivFVDNCYGEFvE~~EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve~~ 256 (416)
T COG4100 197 E----------INPNVIVFVDNCYGEFVEEKEPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAELVEAA 256 (416)
T ss_pred h----------cCCCEEEEEeccchhhhhccCccccchhhhccceeeCCCCceeeccceeechHHHHHhh
Confidence 5 2479999999999877666777777899999999995442 100 27888888887754
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=7e-05 Score=75.53 Aligned_cols=226 Identities=13% Similarity=0.097 Sum_probs=119.5
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCC-CCCCceEEEcCC
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA-SMKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~-~~~~~~i~~t~g 111 (508)
++.=|+|+.+ .+.-.|.+.+++..++.. .+ ++.. +.-+.+ .-.+.+.+.+.++- .++ .|.|+++
T Consensus 54 ~g~EyiD~~ssw~~~~~Ghanpev~ral~~q~~k--~~--hs~~--~~~t~e-av~l~~~l~~~~~~~~~~--rvff~ns 124 (433)
T KOG1401|consen 54 DGKEYIDFTSSWAVTILGHANPEVARALAEQAKK--LG--HSSN--GYFTLE-AVELEEVLSAVLGKGSAE--RVFFCNS 124 (433)
T ss_pred CcceeeeeccceeccccCCCCHHHHHHHHHHHhh--he--eccC--ccccHH-HHHHHHHHHhcccCCCcc--EEEEecC
Confidence 5566787754 344467777776554432 11 1111 011122 22344455555532 455 8999999
Q ss_pred hHHHHHHHHhhcC-CC----CCC--eEEEe-cccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccch
Q 010538 112 ATAALKLVGEAFP-WS----HQS--SYMYT-MENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLP 183 (508)
Q Consensus 112 ~t~al~~~~~~l~-~~----~g~--~vl~~-~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~ 183 (508)
+|+|+..++.... .. +-+ .+|.- ..-|...+..+... +..-..+|.++.. .+.....--|.
T Consensus 125 GTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~---~~s~y~~~~~p~~--------p~v~~~~ynd~ 193 (433)
T KOG1401|consen 125 GTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVT---GNSKYGLPFDPIA--------PDVVTAEYNDS 193 (433)
T ss_pred CcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhh---cccccCCCCCCCC--------CceeecccCCH
Confidence 9999988765431 11 111 25544 44444444444432 2222222222100 00000111145
Q ss_pred hhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC-CCCCCC--
Q 010538 184 IQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC-VTQPPD-- 260 (508)
Q Consensus 184 ~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~-g~~~~d-- 260 (508)
.+++ +.++. .++....|++..+.-.-|.+..-.+.....++ .|+++|+++|.|+++.. |..-.-
T Consensus 194 t~l~--k~~~~---h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k--------~C~~~~vl~I~DEV~tG~gR~g~~~a 260 (433)
T KOG1401|consen 194 TALE--KLFES---HKGEIAAVIVEPIQGAGGIIPADPEFLIGLRK--------ECDDNGVLLIFDEVQTGLGRLGYGWA 260 (433)
T ss_pred HHHH--HHHHh---CCCceEEEEEecccCCCCcccCCHHHHHHHHH--------HHhhcCceEEeehhhhCccccchHHH
Confidence 6666 55533 34567888888888776766553333333332 45669999999999863 221110
Q ss_pred --CCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccc
Q 010538 261 --LSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNT 299 (508)
Q Consensus 261 --~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~ 299 (508)
.-....|+.+.. |.+++---+|..+++++..+.+.|-
T Consensus 261 ~e~~~~~PDI~t~a--K~L~gGlPigA~~v~~kV~~~i~~~ 299 (433)
T KOG1401|consen 261 QEYFGVTPDITTVA--KPLGGGLPIGATGVRDKVAEMISPG 299 (433)
T ss_pred HHHhCcCCcceeeh--hhccCCceeEEEeehHHHHhhcCCC
Confidence 001236888776 9665212289999999998877654
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.7e-05 Score=74.80 Aligned_cols=329 Identities=16% Similarity=0.069 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhc----CCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccC
Q 010538 86 VRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAF----PWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVE 161 (508)
Q Consensus 86 ~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l----~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~ 161 (508)
+..+.+.+.+.+|.+ -++-|.-+-.|=++++..+ ...+|++.++....|-.... ...+..|..++-++.+
T Consensus 81 ~~~L~~avkdifGfq----~~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr--~h~~~ng~~~~n~~~~ 154 (471)
T COG3033 81 YYALADAVKDIFGFQ----YTIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTR--GHIQINGATPRNVYVD 154 (471)
T ss_pred HHHHHHHHHHhcCce----eeeeccCCccHHHHHHHHHhhhccccCCccccccccceecchh--HHHHhcCCcccccccc
Confidence 344556677778864 3455655554544444433 12345555555444433322 2344568888888776
Q ss_pred CccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEe-CCCCCCccccCHHHHHHHHcCCccccccCCCC
Q 010538 162 EAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFP-SECNFSGSRFNLDLINIMKKNPERILEISPFS 240 (508)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~-~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~ 240 (508)
+..+-+ ...+.+=..|++.++ ..|++.. -++...|+++ ..++.-|.-.+++.+.++.+ +|+
T Consensus 155 ea~d~~-----~~~pFKGd~D~~kLe--~lidevG--~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~---------ia~ 216 (471)
T COG3033 155 EAFDTE-----VKYPFKGNFDLEKLE--RLIDEVG--ADNVPYIVLTITNNSAGGQPVSMANMKAVYE---------IAK 216 (471)
T ss_pred cccccc-----ccCCCCCccCHHHHH--HHHHHhC--cccCcEEEEEEeccccCCCcchHHhHHHHHH---------HHH
Confidence 422110 012333344788888 7775432 2334444443 34555677777665555544 444
Q ss_pred CCCeEEEEeccccC-----------CCCCCCCCCC------CCcEEEEeccc-cccCCCcceEEEEech----hHhhhcc
Q 010538 241 KGRWMVLIDAAKGC-----------VTQPPDLSKY------PVDFVVMSFYK-IFGYPTGLGALIMRND----AAKLLKN 298 (508)
Q Consensus 241 ~~g~~vivD~a~~~-----------g~~~~d~~~~------~~D~~~~S~~K-~~g~P~G~G~l~~~~~----~~~~l~~ 298 (508)
+++++++.|++--+ |....++.++ -+|-++.|+-| .+. +-| |++.++++ +.+.++.
T Consensus 217 ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~lv-nmG-Gfl~~~D~~~fDvy~~~~~ 294 (471)
T COG3033 217 KYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGLV-NMG-GFLCFKDDSFFDVYEECRT 294 (471)
T ss_pred HcCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhhheeecccccee-ccc-cEEEecCccHHHHHHHHHh
Confidence 59999999987422 4444444322 47999999999 666 656 89999887 3333332
Q ss_pred c-cccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCC
Q 010538 299 T-YFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENG 377 (508)
Q Consensus 299 ~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~ 377 (508)
. +..-+ .-..|....-.+.+++..|..- ...+-+ ++-....+||.+.|.+.
T Consensus 295 ~~V~~eG--------------------~~tYGgl~GrdmealAvGL~e~--~~~~yl-~~Rv~Qv~YL~~~l~~~----- 346 (471)
T COG3033 295 LVVVQEG--------------------FPTYGGLAGRDMEALAVGLREG--VNFDYL-AHRVAQVQYLADGLEEA----- 346 (471)
T ss_pred heEeecc--------------------ccccCcccchhHHHHHHHHHHh--cCcHHH-HHHHHHHHHHHHHHHhc-----
Confidence 2 11111 0112333344455555555432 223334 44456689999999987
Q ss_pred CceEEEecCCCCCcccCCCCceEEEE----eeCCCCCccCHHHHHHHH-hhCCCeecc-CCCCCchHHHhhcCCChhhhh
Q 010538 378 ADVCTIYGTYTSEVSYHDTGSMVSFN----LKRPDGSWFGYREVEKLA-SLSGIQLRT-GCFCNPGACAKYLGLSHSDLL 451 (508)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~~~~~~~l~~~L-~~~gI~v~~-g~~~~~~~~~~~~~~~~s~~~ 451 (508)
|+.++.|.+ ++-+.++ +++.+.+.+....+...| .+.||.... |.....+.. -
T Consensus 347 --GVpi~~paG--------GHavfvda~~~lphip~eqFpaqala~ely~e~GiRavElG~~~~~rd~--k--------- 405 (471)
T COG3033 347 --GVPIVQPAG--------GHAVFVDAGKFLPHIPAEQFPAQALACELYKEAGIRAVELGSFSLGRDP--K--------- 405 (471)
T ss_pred --CCeeEecCC--------CceEEeehhhhcCCCChhhCcHHHHHHHHHHHhCeeeeeeeceecccCC--C---------
Confidence 798888875 5666665 345555556555555444 678998643 322111110 0
Q ss_pred hhhhcCCccCCCccccCCCCCceEEEecCCC-CCHHHHHHHHHhhhhhhhh
Q 010538 452 SNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM-STFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~-~t~eev~~l~~~~~~~~~~ 501 (508)
=|.. ....-..+|+++--- -|.+.+|.+++.++.+.+.
T Consensus 406 --tg~q----------~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~ 444 (471)
T COG3033 406 --TGKQ----------HPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKEN 444 (471)
T ss_pred --cccc----------CCCchheeeEeccccccchhHHHHHHHHHHHHHhc
Confidence 0000 111236799997633 3788999999988876543
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0027 Score=61.66 Aligned_cols=390 Identities=16% Similarity=0.115 Sum_probs=199.8
Q ss_pred HHHHHHHHhcccCCCC------CCCCchHHHHHHhhccCCCCCeeeeC----CCCCCCCHHHHHHHHHHhhccccCCCCC
Q 010538 5 DKEEFLKEFGEDYGYP------NAPKSIDQIRATEFKRLENGTVYLDH----AGATLYSELQMEAIFRDFTTNVYGNPHS 74 (508)
Q Consensus 5 ~~~~~~~~~~~~~~~~------~~~~~~~~~r~~~f~~~~~~~iyld~----~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 74 (508)
.|+|-|+-+-++-+.. ..|..+-+-.. +|-..+++.-|||. +-.+-.+|.++++...++... +.+.
T Consensus 6 SK~etlklRk~hIG~~Cq~Fy~sDP~kivRaq~-QYmfDE~g~~yLDCInNVaHvghchp~VV~A~~kQmat~---~tN~ 81 (452)
T KOG1403|consen 6 SKTETLKLRKQHIGQACQLFYRSDPLKIVRAQG-QYMFDEEGTRYLDCINNVAHVGHCHPEVVRAGAKQMATI---STNN 81 (452)
T ss_pred hhHHHHhHHHhccCcceeEEecCCchhhehhcc-ceeeccCcccHHHHhhhhhhcccCCHHHHHHHHHHHhHh---cccc
Confidence 3566666655543221 11222333332 45555678888886 235667999999987765331 1222
Q ss_pred ccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcC--CCCCCeEEEecccccchHHH-HH---HH
Q 010538 75 QSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFP--WSHQSSYMYTMENHNSVLGI-RE---YA 148 (508)
Q Consensus 75 ~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~--~~~g~~vl~~~~~h~s~~~~-~~---~~ 148 (508)
.+ -..++.+-+++..+.+=+.+ .+.|++++++|+.++++... .+..|.|.+. ..|-+.+.. ++ +-
T Consensus 82 RF----lhd~lv~cA~~l~stlPeLs----vc~F~NSGSEANDLALRLAR~ftkhqDvItld-HAYHGHl~s~mE~SPYK 152 (452)
T KOG1403|consen 82 RF----LHDELVQCARTLTSTLPELS----VCFFVNSGSEANDLALRLARNFTKHQDVITLD-HAYHGHLQSVMEVSPYK 152 (452)
T ss_pred hh----hHHHHHHHHHHHhhcCCCce----EEEEecCCchhhHHHHHHHHhhcccCceEEEe-chhccceeeeeecccee
Confidence 11 12455666777777766644 57999999999998876542 2334555433 333222211 11 10
Q ss_pred HhcC---CeEEEE---ccCC--ccCc-cccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC
Q 010538 149 LSQG---AAAFAI---DVEE--AVDN-DGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN 219 (508)
Q Consensus 149 ~~~G---~~v~~v---~~~~--~~~~-~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~ 219 (508)
-..| .+..+| |..+ .+.. ++.-+.-++...++.+++.+.+ ..+ ..+.....++..+.++.-|.++|
T Consensus 153 F~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~-d~~----~~g~gvAAfiAEslQSCGGQiiP 227 (452)
T KOG1403|consen 153 FNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPDADMGALYADPVKEICQ-DQL----AKGQGVAAFIAESLQSCGGQIIP 227 (452)
T ss_pred ccCCCCcCCCceeEecCCccccccccccccCCcccchhhhhhHHHHHHH-HHH----hcCCcHHHHHHHHHHhcCCcccC
Confidence 1112 121222 2211 0110 0000111222344444444431 111 12334455556677788899999
Q ss_pred HH----HHHHHHcCCccccccCCCCCCCeEEEEeccccC-CCC---CCCCCC--CCCcEEEEeccccccCCCcceEEEEe
Q 010538 220 LD----LINIMKKNPERILEISPFSKGRWMVLIDAAKGC-VTQ---PPDLSK--YPVDFVVMSFYKIFGYPTGLGALIMR 289 (508)
Q Consensus 220 i~----~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~-g~~---~~d~~~--~~~D~~~~S~~K~~g~P~G~G~l~~~ 289 (508)
.. ++.+.++. +|-..|.|.+|.. |.. -..+.. .=.|+++.. |-+|.-.-++.+...
T Consensus 228 PagYFq~Va~~Vr~------------aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPDIVtmg--KpmGNGhPVa~Vatt 293 (452)
T KOG1403|consen 228 PAGYFQAVADAVRS------------AGGVCIADEVQVGFGRVGSHYWAFQTYNFIPDIVTMG--KPMGNGHPVAAVATT 293 (452)
T ss_pred chhHHHHHHHHHhc------------CCCeEEeehhhhcccccchhhhhhhhhccccchheec--ccCCCCCeeeEEecc
Confidence 54 55666665 8999999999852 221 111111 125777766 744422127888888
Q ss_pred chhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Q 010538 290 NDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVL 369 (508)
Q Consensus 290 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L 369 (508)
++..+.+... +. ++-...|..+. +.+...+.++.+. -++++.+..+..++|...|
T Consensus 294 keIA~Af~at----gv-----------------~YFNTyGGnPV-sCAv~laVm~v~e---~E~Lq~ha~~vG~~L~~lL 348 (452)
T KOG1403|consen 294 KEIAQAFHAT----GV-----------------EYFNTYGGNPV-SCAVGLAVMRVCE---DENLQEHAQQVGEKLEVLL 348 (452)
T ss_pred HHHHHHhccc----cc-----------------eehhccCCCch-hHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHH
Confidence 8876554432 10 11111122222 2222223444443 3788888888999998888
Q ss_pred hcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCc-cCH---HHHHHHHh-hCCCeeccCCCCCchHHHhhcC
Q 010538 370 LSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSW-FGY---REVEKLAS-LSGIQLRTGCFCNPGACAKYLG 444 (508)
Q Consensus 370 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~---~~l~~~L~-~~gI~v~~g~~~~~~~~~~~~~ 444 (508)
+++. ...+++++-.. -+-++-+++-.....+ .+. .-+...|+ .++|.++..-
T Consensus 349 ~~~k-----~kh~~IGDvRG------vGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaDG------------ 405 (452)
T KOG1403|consen 349 RRLK-----QKHECIGDVRG------VGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSADG------------ 405 (452)
T ss_pred HHHh-----hhccceecccc------ceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecCC------------
Confidence 7653 23455665432 1334444442211111 111 12344444 4578876521
Q ss_pred CChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 445 LSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 445 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
-.++.+.|-+-.-.++++++.++..+.+++
T Consensus 406 -------------------------Ph~NilKiKPPmCFneena~e~v~~ld~iL 435 (452)
T KOG1403|consen 406 -------------------------PHRNILKIKPPMCFNEENADEFVLGLDEIL 435 (452)
T ss_pred -------------------------CCCceeecCCCcccChhhHHHHHHHHHHHH
Confidence 125778887766667888888877776665
|
|
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0021 Score=62.84 Aligned_cols=276 Identities=13% Similarity=0.119 Sum_probs=145.0
Q ss_pred CChHHHHHHHHhhcC-CCCCCeEEEecccccchHHHHHHHHhcC-CeEEEEccCCccCccccccccccccccccchhhhh
Q 010538 110 SGATAALKLVGEAFP-WSHQSSYMYTMENHNSVLGIREYALSQG-AAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRR 187 (508)
Q Consensus 110 ~g~t~al~~~~~~l~-~~~g~~vl~~~~~h~s~~~~~~~~~~~G-~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~ 187 (508)
-|+|.|+.+...-+. +-+...|.++...-++.. ..++..| .++...+..+...- ..|.+.+.
T Consensus 106 lsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~---~if~~aGf~tv~~Y~yWd~~~k-------------~~d~e~~L 169 (410)
T KOG1412|consen 106 LSGTGALRIAADFLATFYNKNTVYVSNPTWENHH---AIFEKAGFTTVATYPYWDAENK-------------CVDLEGFL 169 (410)
T ss_pred ccccchhhhhHHHHHHhcccceeEecCCchhHHH---HHHHHcCCceeeeeeeecCCCc-------------eecHHHHH
Confidence 466667766554442 223556776653333333 2345567 55666665432211 11455554
Q ss_pred cCCCCCCCCCCCCCceEEEEeCC-CCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEecc-ccCCCCCCCCCCC-
Q 010538 188 KGASFPERDPAGDAYNLFAFPSE-CNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAA-KGCVTQPPDLSKY- 264 (508)
Q Consensus 188 ~~~~l~~~~~~~~~t~lv~~~~~-~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a-~~~g~~~~d~~~~- 264 (508)
+.|+. .|.-.++.+..+ +||||.=-.-+....+++- + +..+.+.+.|-+ |++..-++|-..|
T Consensus 170 --sdl~~----APe~si~iLhaCAhNPTGmDPT~EQW~qia~v--------i-k~k~lf~fFDiAYQGfASGD~~~DawA 234 (410)
T KOG1412|consen 170 --SDLES----APEGSIIILHACAHNPTGMDPTREQWKQIADV--------I-KSKNLFPFFDIAYQGFASGDLDADAWA 234 (410)
T ss_pred --HHHhh----CCCCcEEeeeccccCCCCCCCCHHHHHHHHHH--------H-HhcCceeeeehhhcccccCCccccHHH
Confidence 44322 244456666555 8999987777755555442 1 126888888855 5665555554433
Q ss_pred -------CC-cEEEEeccccccCCCc--ceEEEE--echh-HhhhccccccCceEEecccchhhhhhccCccccccCCCC
Q 010538 265 -------PV-DFVVMSFYKIFGYPTG--LGALIM--RNDA-AKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTA 331 (508)
Q Consensus 265 -------~~-D~~~~S~~K~~g~P~G--~G~l~~--~~~~-~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 331 (508)
+. =|++-|+.|.|| .++ +|.+-+ ++.. +..+..... ...+.....|
T Consensus 235 iR~fV~~g~e~fv~QSFaKNfG-lYneRvGnltvv~~n~a~i~~v~SQl~--------------------lviR~~~SNP 293 (410)
T KOG1412|consen 235 IRYFVEQGFELFVCQSFAKNFG-LYNERVGNLTVVVNNPAVIAGVKSQLT--------------------LVIRSNWSNP 293 (410)
T ss_pred HHHHHhcCCeEEEEhhhhhhcc-cccccccceEEEecChhHHHHHHHHHH--------------------HHHhhccCCC
Confidence 33 266779999887 554 565543 3332 211111100 0011111112
Q ss_pred ChhHHHHHHH------HH-HHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCce-EEEecCCCCCcccCCCCceEEEE
Q 010538 332 SFLSIASIRH------GF-NLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADV-CTIYGTYTSEVSYHDTGSMVSFN 403 (508)
Q Consensus 332 ~~~~~~~l~~------al-~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~ 403 (508)
+..+.--... -. +|.++ +..+..|+.+++..|++.|..+. .|| +.-+. ++.++.+|.
T Consensus 294 PAyGArIV~kvL~tP~lre~W~~s--ik~MssRI~~MR~aLrd~L~aL~----TPGtWDHI~---------~QiGMFSyT 358 (410)
T KOG1412|consen 294 PAYGARIVHKVLSTPELREQWIQS--IKTMSSRIKKMRTALRDHLVALK----TPGTWDHIT---------QQIGMFSYT 358 (410)
T ss_pred cchhhHHHHHHhcCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcC----CCCcHHHHH---------hhccceeec
Confidence 2111111111 11 23333 78899999999999999998873 222 11111 225665554
Q ss_pred eeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCC
Q 010538 404 LKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMS 483 (508)
Q Consensus 404 ~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 483 (508)
+ +.+..+..+.+.+.|.+.. .| ||+++..|
T Consensus 359 --G-----Ltp~qV~~li~~h~vyLl~-----------------------------------------~G--RInisGLN 388 (410)
T KOG1412|consen 359 --G-----LTPAQVDHLIENHKVYLLS-----------------------------------------DG--RINISGLN 388 (410)
T ss_pred --C-----CCHHHHHHHHHhceEEEec-----------------------------------------CC--cEeeeccc
Confidence 3 3334455555667777543 34 55555444
Q ss_pred CHHHHHHHHHhhhhhhhhhh
Q 010538 484 TFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 484 t~eev~~l~~~~~~~~~~~~ 503 (508)
-..|+++.+++.+-|++++
T Consensus 389 -~~NveyVAkAIde~Vr~~~ 407 (410)
T KOG1412|consen 389 -MKNVEYVAKAIDETVRAIK 407 (410)
T ss_pred -cccHHHHHHHHHHHHHhhc
Confidence 3568888888888777764
|
|
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0082 Score=59.74 Aligned_cols=201 Identities=15% Similarity=0.117 Sum_probs=120.0
Q ss_pred CCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC--------CCCCCCCCCCc
Q 010538 200 DAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT--------QPPDLSKYPVD 267 (508)
Q Consensus 200 ~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~--------~~~d~~~~~~D 267 (508)
..+..+++.-.++.-|.-.- ...+.+++++ ||+.+|||.+|..|. ...++.. .+|
T Consensus 270 ~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~K------------h~v~fivDEVQTGgGaTGk~WaHehw~l~~-PpD 336 (484)
T KOG1405|consen 270 KPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKK------------HGVAFIVDEVQTGGGATGKFWAHEHWNLDS-PPD 336 (484)
T ss_pred CCeEEEEeechhccCCCccCCHHHHHHHHHHHHh------------cCeEEEeeeeecCCCccCceeeehhcCCCC-Ccc
Confidence 34566777777777776544 5577777776 999999999997532 2233332 578
Q ss_pred EEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH
Q 010538 268 FVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN 347 (508)
Q Consensus 268 ~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~ 347 (508)
.+++| |-|- - | | .+-++++ +|.-. +. ....+.|-| .-..-+...++.+.
T Consensus 337 ~vTFS--KK~q-~-g-G-ffh~~~f----rpn~p----------Yr---------ifNTWmGdP--~k~lll~~vv~~I~ 385 (484)
T KOG1405|consen 337 VVTFS--KKFQ-T-G-G-FFHDEEF----RPNEP----------YR---------IFNTWMGDP--SKNLLLEEVVQEIK 385 (484)
T ss_pred ceehh--hhhh-c-C-c-cccCccc----CCCch----------HH---------HhhhhcCCh--HHHHHHHHHHHHHh
Confidence 88877 7444 2 2 4 3334333 22200 00 001122332 23445566667665
Q ss_pred hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCe
Q 010538 348 SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQ 427 (508)
Q Consensus 348 ~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~ 427 (508)
+ +.+.+......++|..+|.++.. ..|+ .+..-.+ |+.+++++.+..... .++...++.+|+.
T Consensus 386 ~---~~Ll~n~~~vG~~l~~gL~~Lq~--~~p~-~~~~~RG-------rGTF~a~d~ps~~~R----dk~i~~~~~nGv~ 448 (484)
T KOG1405|consen 386 R---EDLLNNVAHVGKALLKGLLELQA--KYPG-KINNLRG-------RGTFIAWDCPSGSIR----DKLILIARLNGVN 448 (484)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHH--hCch-hhhcccc-------cceEEEEeCCChHHH----HHHHHHHHHcCce
Confidence 5 56667777788888887765421 0011 1111111 488899998765322 3577888889998
Q ss_pred eccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 428 LRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 428 v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
+.. | ....||+-++.--++...+-+++.+.+.++
T Consensus 449 ~GG---C------------------------------------g~~siRfRPsLvf~~~Ha~i~l~~~~k~l~ 482 (484)
T KOG1405|consen 449 LGG---C------------------------------------GDKSIRFRPSLVFRKHHADIFLDIFDKILA 482 (484)
T ss_pred ecc---c------------------------------------ccceeeeccceeehhhhHHHHHHHHHHHhc
Confidence 643 2 245688888877788888888888776653
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.024 Score=51.00 Aligned_cols=54 Identities=11% Similarity=0.112 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHcC----CCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEeccccc
Q 010538 83 CDIVRAAREQVLDYFN----ASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHN 139 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~----~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~ 139 (508)
..+.+++.+.+.+.+| ++++ +|++|+|++.|+.+++.++ ..+|+.|+++...|+
T Consensus 95 ~~lR~AiA~~l~~~~g~~v~~~pd--~Ivvt~Ga~~al~~l~~~l-~dpGD~VlVp~P~Y~ 152 (153)
T PLN02994 95 ANFRKAIANFMAEARGGRVKFDAD--MIVLSAGATAANEIIMFCI-ADPGDAFLVPTPYYA 152 (153)
T ss_pred HHHHHHHHHHHHHHhCCCCccchh--heEEcCCHHHHHHHHHHHH-cCCCCEEEEeCCCCC
Confidence 3445555666666655 4677 8999999999999999999 688999999886665
|
|
| >KOG2142 consensus Molybdenum cofactor sulfurase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.043 Score=58.71 Aligned_cols=259 Identities=24% Similarity=0.360 Sum_probs=150.4
Q ss_pred HHHHHHHHhcccCCCCCCCCchHHHHHHhhccCCCC--CeeeeCCCCCCCCHHHHHHHHHHhh---ccccCC--CCCccc
Q 010538 5 DKEEFLKEFGEDYGYPNAPKSIDQIRATEFKRLENG--TVYLDHAGATLYSELQMEAIFRDFT---TNVYGN--PHSQSD 77 (508)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~f~~~~~~--~iyld~~~~~~~~~~~~~a~~~~~~---~~~~~~--~~~~~~ 77 (508)
+-++-|..|.+.|+.--.+..++.+|..+|-.+... ..-+++.+.+..+-.....+...-. .+...| -+..+.
T Consensus 90 ~~t~al~~vae~fp~~s~tekid~lrs~~y~hls~s~~~~~~~~~~~gl~sy~q~~~i~~~~~~sls~~~~~ls~~~L~~ 169 (728)
T KOG2142|consen 90 ALTEALKLVAEAFPFYSQTEKIDNLRSDEYGHLSSSGHLMRLDYSGIGLFSYSQTNEISDSEEFSLSESEANLSEHSLFG 169 (728)
T ss_pred HHHHHHHHHHHhCccccccccccchhhhhhcccccccceeeeeeeccceEEeeeeeeccccccccccccccCcccchhcc
Confidence 345666777777766665668999998777666311 2445555544433311111100000 000000 001111
Q ss_pred hhhhhhHHHHH-HHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccc--hHHHHHHHHhcCCe
Q 010538 78 ISLATCDIVRA-AREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNS--VLGIREYALSQGAA 154 (508)
Q Consensus 78 ~~~~~~~~~~~-~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s--~~~~~~~~~~~G~~ 154 (508)
+......... .++.+-++++.+.++|-+++|.+-..+..+.+.+.+..-... ++.-..||+ +..+.+.++..|++
T Consensus 170 -g~a~~nfeg~kik~ri~d~L~ipe~~y~lldtaSrvSaf~Ldaesy~f~~~~~-lltiFgyetgAvlv~~r~A~~~Ggk 247 (728)
T KOG2142|consen 170 -GAAQSNFEGDKIKLRIMDRLNIPESEYVLLDTASRVSAFPLDAESYPFDFNPK-LLTIFGYETGAVLVMNRSAELKGGK 247 (728)
T ss_pred -cchhcccccceeeeeeecccccCCceEEEEEeecccccccchHhhCCCcccch-heeecCCCchhhHHHhhhhHhhcCc
Confidence 1111111111 677788899998888899999999999999999986544444 777788886 33334445556766
Q ss_pred EEEEccCC-ccCccccccccccccccccchhhhhcCCCCCCCC--CCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCc
Q 010538 155 AFAIDVEE-AVDNDGLSESLVTSTKISLLPIQRRKGASFPERD--PAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPE 231 (508)
Q Consensus 155 v~~v~~~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~--~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~ 231 (508)
+...-..+ ...+ --+.++ +.+.+.. -.+-..-+..++...-.||..+++..+.=...
T Consensus 248 t~sa~f~wp~~~l---------------~s~~lk--kr~e~gk~~~kd~a~gl~vFp~~sRvtG~~ysy~wmt~al~--- 307 (728)
T KOG2142|consen 248 TASAEFSWPMLYL---------------LSEKLK--KRFEDGKLRFKDIAQGLFVFPTQSRVTGGMYSYSWMTLALA--- 307 (728)
T ss_pred cceeecccchHHH---------------HHHHHH--HHHhhccccccchhhheeccchHhhhcccchhHHHHHHHHh---
Confidence 55443322 1111 012233 2221110 01112456778888999999999998873333
Q ss_pred cccccCCCCCCCeEEEEeccccCCCCCCC---CCCCCCcEEEEeccccccC--CCcceEEEEechhHhhh
Q 010538 232 RILEISPFSKGRWMVLIDAAKGCVTQPPD---LSKYPVDFVVMSFYKIFGY--PTGLGALIMRNDAAKLL 296 (508)
Q Consensus 232 ~~~~~~~~~~~g~~vivD~a~~~g~~~~d---~~~~~~D~~~~S~~K~~g~--P~G~G~l~~~~~~~~~l 296 (508)
.++.+..|+-+. |....+ +.....||...|+++.+|- |.|.|++.+++-.+-.+
T Consensus 308 ----------~~whvlLda~~l-G~kdmd~yglS~f~Pdfqg~sf~fv~g~d~psgfGcl~VkKs~i~~l 366 (728)
T KOG2142|consen 308 ----------NNWHVLLDALAL-GPKDMDSYGLSLFQPDFQGPSFYFVFGRDDPSGFGCLEVKKSAISGL 366 (728)
T ss_pred ----------hhHHHHHhhhcc-CcchHhhhhhhccCccceeeeEEEEeccCCCCceeeeeeehhhhhce
Confidence 699999998776 322222 2333589999999998884 56799999988775433
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.37 Score=48.25 Aligned_cols=206 Identities=14% Similarity=0.100 Sum_probs=102.8
Q ss_pred CChHHHHHHHHhhcC-CCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC--cc--Cccccccccccccccccchh
Q 010538 110 SGATAALKLVGEAFP-WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE--AV--DNDGLSESLVTSTKISLLPI 184 (508)
Q Consensus 110 ~g~t~al~~~~~~l~-~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~--~~--~~~~l~~~~~~~~~~~~d~~ 184 (508)
-++|.|+.+...-+. +-++..|.++...-.+.. ......|+.+....... .. +++.+ ++
T Consensus 127 lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~---~if~~ag~~~~~yrYyd~~t~gld~~g~-------------le 190 (427)
T KOG1411|consen 127 LSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHK---NIFKDAGLPVKFYRYYDPKTRGLDFKGM-------------LE 190 (427)
T ss_pred ccCcchhhHHHHHHHhhccccceeecCCcccccC---ccccccCcceeeeeeccccccccchHHH-------------HH
Confidence 366667766544332 345677777763322222 22333477776664432 11 22111 34
Q ss_pred hhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccc-cCCCCCCCCCC
Q 010538 185 QRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAK-GCVTQPPDLSK 263 (508)
Q Consensus 185 ~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~-~~g~~~~d~~~ 263 (508)
++. ++- +.-.++.=...+||||.=-..+...++.+ +.++.+.+-+.|.++ ++..-.+|-..
T Consensus 191 dl~--~~p-------~gs~ilLhaCaHNPTGvDPt~eqw~ki~~---------~~~~k~~~pffDmAYQGfaSG~~d~DA 252 (427)
T KOG1411|consen 191 DLG--EAP-------EGSIILLHACAHNPTGVDPTKEQWEKISD---------LIKEKNLLPFFDMAYQGFASGDLDKDA 252 (427)
T ss_pred HHh--cCC-------CCcEEEeehhhcCCCCCCccHHHHHHHHH---------HhhhccccchhhhhhcccccCCchhhH
Confidence 444 221 22233333556899998766665444443 223378888889774 44433444322
Q ss_pred --------CCCc-EEEEeccccccCCCc--ceEEEE---echhHhhhccccccCceEEecccchhhhhhccCccccccCC
Q 010538 264 --------YPVD-FVVMSFYKIFGYPTG--LGALIM---RNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDG 329 (508)
Q Consensus 264 --------~~~D-~~~~S~~K~~g~P~G--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 329 (508)
.+.. +++-|+-|.+| ..| +|.+-+ +.+...+....+.- ..+.+. .
T Consensus 253 ~avR~F~~~g~~~~laQSyAKNMG-LYgERvGa~svvc~~ad~A~rV~SQlk~-------------------liRpmY-S 311 (427)
T KOG1411|consen 253 QAVRLFVEDGHEILLAQSYAKNMG-LYGERVGALSVVCKDADEAKRVESQLKI-------------------LIRPMY-S 311 (427)
T ss_pred HHHHHHHHcCCceEeehhhhhhcc-hhhhccceeEEEecCHHHHHHHHHHHHH-------------------Hhcccc-c
Confidence 2344 55669999888 666 555532 33333222211000 011111 1
Q ss_pred CCChh--HHHHHHH---H--HHHHHhcChHHHHHHHHHHHHHHHHHHhcc
Q 010538 330 TASFL--SIASIRH---G--FNLINSLTVPAICRHIASLGMYVRKVLLSL 372 (508)
Q Consensus 330 t~~~~--~~~~l~~---a--l~~~~~~g~~~i~~~~~~l~~~l~~~L~~l 372 (508)
+|+.. .+++-.- . -+|+.+ ++.+..|+..+++.|.+.|++.
T Consensus 312 nPP~hGArIv~~Il~d~~l~~~W~~e--vk~MadRi~~mR~~L~d~L~~~ 359 (427)
T KOG1411|consen 312 NPPLHGARIVATILSDPDLKNQWLGE--VKGMADRIISMRQQLFDALEKE 359 (427)
T ss_pred CCCccchhhhhhccCChHHHHHHHHH--HHHHHHhhhhhHHHHhHHhhcC
Confidence 22221 1222110 0 123333 6788899999999999999875
|
|
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=88.77 E-value=0.47 Score=45.71 Aligned_cols=153 Identities=18% Similarity=0.153 Sum_probs=85.2
Q ss_pred HHHHHHHhhcC-CCC-CCeEEEecccccchHHHHHHHHhcCCeEEEEc-c-CCccCccccccccccccccccchhhhhcC
Q 010538 114 AALKLVGEAFP-WSH-QSSYMYTMENHNSVLGIREYALSQGAAAFAID-V-EEAVDNDGLSESLVTSTKISLLPIQRRKG 189 (508)
Q Consensus 114 ~al~~~~~~l~-~~~-g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~-~-~~~~~~~~l~~~~~~~~~~~~d~~~l~~~ 189 (508)
+.+.+.+.++. .+| ...|+-...+.-|.+..+-. .|.+.+.|. + +++.-+ -|++.++
T Consensus 87 mslslc~~s~r~krpkakyiiw~ridqks~~ksi~~---agfepiiie~i~d~d~l~--------------tdleav~-- 147 (432)
T KOG3843|consen 87 MSLSLCFLSLRHKRPKAKYIIWLRIDQKSCFKSIIH---AGFEPIIIENILDGDELI--------------TDLEAVE-- 147 (432)
T ss_pred ccHHHHHHHHhhcCCcccEEEEEecchHHHHHHHHh---cCCCceeeeccccchHHH--------------HhHHHHH--
Confidence 34555555552 223 35666666666665554333 377766653 2 222111 2456665
Q ss_pred CCCCCCCCCCCCceEEEEeC--CCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCC------CCC
Q 010538 190 ASFPERDPAGDAYNLFAFPS--ECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQP------PDL 261 (508)
Q Consensus 190 ~~l~~~~~~~~~t~lv~~~~--~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~------~d~ 261 (508)
+.+.+. ++. .++++.+ .+...-.-..+++|+.+|.. |+++.+|..+++.-... ---
T Consensus 148 ~~iee~---g~d-cilci~sttscfapr~pd~leaiaaica~------------~diphivnnayglqsee~i~~iaa~~ 211 (432)
T KOG3843|consen 148 AIIEEL---GED-CILCIHSTTSCFAPRSPDNLEAIAAICAA------------HDIPHIVNNAYGLQSEECIHKIAAAA 211 (432)
T ss_pred HHHHHh---CCc-eEEEEeecccccCCCCCchHHHHHHHHHc------------cCchhhhccccccchHHHHHHHHHHh
Confidence 444322 333 3333322 22222333448999999998 99999999887641100 001
Q ss_pred CCCCCcEEEEeccccccCCCcceEEEE--echhHhhhcccccc
Q 010538 262 SKYPVDFVVMSFYKIFGYPTGLGALIM--RNDAAKLLKNTYFS 302 (508)
Q Consensus 262 ~~~~~D~~~~S~~K~~g~P~G~G~l~~--~~~~~~~l~~~~~g 302 (508)
..-.+|.++-|.-|.|-.|-| |.+++ ++.++..+...++|
T Consensus 212 ~~grida~vqsldknf~vpvg-gaiia~fk~n~iq~iak~ypg 253 (432)
T KOG3843|consen 212 ECGRIDAFVQSLDKNFMVPVG-GAIIAAFKDNFIQEIAKMYPG 253 (432)
T ss_pred hhccHHHHHHHhhhcceeecc-hhHhhHhHHHHHHHHHHhCCC
Confidence 111479999999998887977 55553 56666666665554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 508 | ||||
| 1p3w_B | 404 | X-Ray Crystal Structure Of E. Coli Iscs Length = 40 | 4e-06 | ||
| 3lvj_A | 423 | Crystal Structure Of E.Coli Iscs-Tusa Complex (Form | 5e-06 | ||
| 1t3i_A | 420 | Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE De | 7e-06 | ||
| 4eb5_A | 382 | A. Fulgidus Iscs-Iscu Complex Structure Length = 38 | 1e-04 |
| >pdb|1P3W|B Chain B, X-Ray Crystal Structure Of E. Coli Iscs Length = 404 | Back alignment and structure |
|
| >pdb|3LVJ|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1) Length = 423 | Back alignment and structure |
|
| >pdb|1T3I|A Chain A, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE Desulfurase From Synechocystis Pcc 6803 Length = 420 | Back alignment and structure |
|
| >pdb|4EB5|A Chain A, A. Fulgidus Iscs-Iscu Complex Structure Length = 382 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 508 | |||
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 2e-11 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 8e-09 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 3e-07 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 8e-06 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 3e-07 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 3e-07 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 5e-05 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 7e-07 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 2e-06 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 2e-06 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 6e-06 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 2e-05 |
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* Length = 390 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 2e-11
Identities = 57/402 (14%), Positives = 110/402 (27%), Gaps = 90/402 (22%)
Query: 26 IDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDI 85
I +F L N Y + G + + +EAI + N + +
Sbjct: 4 ITPSLH-QFPGLAN-KTYFNFGGQGILPTVALEAI-TAMYGYLQENGPFSIAANQHIQQL 60
Query: 86 VRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPW--------SHQSSYMYTMEN 137
+ R+ + + FN T T +V W + E+
Sbjct: 61 IAQLRQALAETFNVDPNT--ITITDNVTTGCDIVLWGLDWHQGDEILLTD-------CEH 111
Query: 138 HNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSE---SLVTS-TKISLLPIQRRKGASFP 193
+ ++ A G V ++ + + + T+
Sbjct: 112 PGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTR--------------- 156
Query: 194 ERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNP-ERILEI---SPFSKGRWMVLID 249
L +G P I+ + + +++ D
Sbjct: 157 ----------LVILSHLLWNTGQV-----------LPLAEIMAVCRRHQGNYPVRVLV-D 194
Query: 250 AAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAAS 309
A+ + P D S+ VD+ + +K F P G+G L + D + TY
Sbjct: 195 GAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWR----- 249
Query: 310 IADIDFVKRRQGVE--EL---FEDGTASFLSIASIRHGFNLINSLTVPAI-CRHIASLGM 363
I + + + E FE T+++ A + L + I
Sbjct: 250 --SITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSE 307
Query: 364 YVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLK 405
++ + L L H T +VSF +
Sbjct: 308 FLWRGLNQLPH------VHCLATSA------PQAGLVSFTVD 337
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 Length = 416 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 8e-09
Identities = 50/375 (13%), Positives = 98/375 (26%), Gaps = 57/375 (15%)
Query: 40 GTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA 99
G +YLD + + +GN +S S D+ ++ A
Sbjct: 28 GVIYLDGNSLGARPVAALARA-QAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGA 86
Query: 100 SMKDYKCIFTSGATAALKLVGEAFPWSHQSSY------MYTMENHNSVLGIREYALSQGA 153
+ + T + L V A + + N + L Y +G
Sbjct: 87 RDGE--VVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDL----YIA-EGL 139
Query: 154 AAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNF 213
A +L LP +
Sbjct: 140 ADML----------QQGYTLRLVDSPEELP------------QAIDQDTAVVMLTHVNYK 177
Query: 214 SGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSF 273
+G ++ + + G + D A P DL + D+ +
Sbjct: 178 TGYMHDMQALTALSH-----------ECGALAIW-DLAHSAGAVPVDLHQAGADYAIGCT 225
Query: 274 YK-IFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTAS 332
YK + G P + + L+ + A + G+ + GT
Sbjct: 226 YKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIAR-YLCGTQP 284
Query: 333 FLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVS 392
S+A + G ++ + ++ R +L +++ + + T
Sbjct: 285 ITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVT-------PRE 337
Query: 393 YHDTGSMVSFNLKRP 407
+ GS VSF
Sbjct: 338 HAKRGSHVSFEHPEG 352
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} Length = 406 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 4/104 (3%)
Query: 20 PNAPKSIDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDIS 79
+ + ++R L +G V+ D L + + + +
Sbjct: 7 HHGAYDVARVRG-LHPSLGDGWVHFDAPAGMLIPDSVATTV-STAFRRSGASTVGAHPSA 64
Query: 80 LATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAF 123
+ ++ AARE V D NA + + L L+ EA
Sbjct: 65 RRSAAVLDAAREAVADLVNADPGG--VVLGADRAVLLSLLAEAS 106
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} Length = 406 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 8e-06
Identities = 23/179 (12%), Positives = 51/179 (28%), Gaps = 50/179 (27%)
Query: 245 MVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLL-------K 297
+V++D + + D+ + D V ++ + G P + ++
Sbjct: 197 LVVVDHSAAAPYRLLDIRETDADVVTVNAHAWGG-PPIGAMVFRDPS---VMNSFGSVST 252
Query: 298 NTY------FSGGT-----VAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLI 346
N Y G +A +A I+++ D +A +
Sbjct: 253 NPYATGPARLEIGVHQFGLLAGVVASIEYLAAL--------DESARGSRRERLAVSMQ-- 302
Query: 347 NSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLK 405
+ ++ + Y+ L SL + G +VSF +
Sbjct: 303 ------SADAYLNRVFDYLMVSLRSLPL------VMLIGRPE------AQIPVVSFAVH 343
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* Length = 384 | Back alignment and structure |
|---|
Score = 51.3 bits (124), Expect = 3e-07
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 42 VYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASM 101
VY D+ T + +E + F YGNP+S + + + ARE+V S
Sbjct: 3 VYFDNNATTRVDDRVLEEM-IVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSP 61
Query: 102 KDYKCIFTSGAT----AALKLVGEAFP 124
+ FTS AT LK V E F
Sbjct: 62 SE--IFFTSCATESINWILKTVAETFE 86
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* Length = 406 | Back alignment and structure |
|---|
Score = 51.3 bits (124), Expect = 3e-07
Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 38/171 (22%)
Query: 246 VLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNT--YFSG 303
VL+D A+ + P D+ DF V S +K++G PTG+G L ++ LL+ + G
Sbjct: 197 VLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYG-PTGIGILYVKEA---LLQEMPPWEGG 252
Query: 304 GTVAASIADIDFVKRRQGV--EEL---FEDGTASFLSIASIRHGF----NLINSLTVPAI 354
G++ I V +G + FE GT + I G +++L + I
Sbjct: 253 GSM------IATVSLSEGTTWTKAPWRFEAGTP---NTGGI-IGLGAALEYVSALGLNNI 302
Query: 355 CRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLK 405
+ +L Y L S+ T+YG + +++FNL
Sbjct: 303 AEYEQNLMHYALSQLESV------PDLTLYGP-------QNRLGVIAFNLG 340
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* Length = 406 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 5e-05
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 21/110 (19%)
Query: 26 IDQIRATEF---KRLENGT--VYLDHAGATLYSELQ-MEAIFRDFTTNVYGNPH------ 73
+D++RA +F R NG YLD A A+ Q ++A +F + Y H
Sbjct: 5 VDKVRA-DFPVLSREVNGLPLAYLDSA-ASAQKPSQVIDAE-AEFYRHGYAAVHRGIHTL 61
Query: 74 SQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAF 123
S AT + + R++ + NA + + +F G T + LV ++
Sbjct: 62 SA----QAT-EKMENVRKRASLFINARSAE-ELVFVRGTTEGINLVANSW 105
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* Length = 432 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 7e-07
Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 7/87 (8%)
Query: 42 VYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASM 101
VY+D+ T ++A+ + +GNP S DI+ AR +
Sbjct: 20 VYMDYNATTPLEPEVIQAV-TEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKP 78
Query: 102 KDYKCIFTSGAT----AALKLVGEAFP 124
+D IFTSG T + F
Sbjct: 79 QD--IIFTSGGTESNNLVIHSTVRCFH 103
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* Length = 423 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 42 VYLDHAGATLYSELQMEAIFRDFT-TNVYGNPHSQS-DISLATCDIVRAAREQVLDYFNA 99
+YLD++ T E + + T +GNP S+S + V AR Q+ D A
Sbjct: 24 IYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGA 83
Query: 100 SMKDYKCIFTSGAT----AALKLVGEAFP 124
++ +FTSGAT A+K +
Sbjct: 84 DPREI--VFTSGATESDNLAIKGAANFYQ 110
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* Length = 382 | Back alignment and structure |
|---|
Score = 49.0 bits (118), Expect = 2e-06
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
Query: 42 VYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASM 101
Y D+ A E +EA+ T + +GNP S + V+ ARE+V N
Sbjct: 2 AYFDYTSAKPVDERILEAMLPYMTES-FGNPSSVHSYGFKAREAVQEAREKVAKLVNGGG 60
Query: 102 KDYKCIFTSGAT----AALKLVGEAF 123
+FTSGAT A+
Sbjct: 61 GT--VVFTSGATEANNLAIIGYAMRN 84
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 Length = 420 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 6e-06
Identities = 38/166 (22%), Positives = 66/166 (39%), Gaps = 25/166 (15%)
Query: 246 VLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNT--YFSG 303
VL+DA + P D+ D++V S +K+ PTG+G L + + +L+ +F G
Sbjct: 202 VLVDACQSAPHYPLDVQLIDCDWLVASGHKMCA-PTGIGFLYGKEE---ILEAMPPFFGG 257
Query: 304 GTVAASIADIDFVKRRQGV-EEL---FEDGTASFLSIASIRHGFNLINSLTVPAICRHIA 359
G + I V EL FE GT + ++ + + L + I +
Sbjct: 258 GEM------IAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEV 311
Query: 360 SLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLK 405
L Y+ + L + +YG D ++ SFN+
Sbjct: 312 ELTHYLWQGLGQIPQ------LRLYGPNPKH---GDRAALASFNVA 348
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 Length = 420 | Back alignment and structure |
|---|
Score = 46.3 bits (111), Expect = 2e-05
Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 21/115 (18%)
Query: 21 NAPKSIDQIRATEF---KRLENGT--VYLDHAGATLYSELQ-MEAIFRDFTTNVYGNPH- 73
P +R +F + NG VYLD+A AT +E + + N N H
Sbjct: 5 QIPSLAATVRQ-DFPILNQEINGHPLVYLDNA-ATSQKPRAVLEKL-MHYYENDNANVHR 61
Query: 74 -----SQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAF 123
S AT D A R +V + NA + ++T AT A+ LV ++
Sbjct: 62 GAHQLSV----RAT-DAYEAVRNKVAKFINARSPR-EIVYTRNATEAINLVAYSW 110
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 508 | |||
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 100.0 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 100.0 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 100.0 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 100.0 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 100.0 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 100.0 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 100.0 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 100.0 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 100.0 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 100.0 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 100.0 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 100.0 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 100.0 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 100.0 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 100.0 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 100.0 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 100.0 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 100.0 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 100.0 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 100.0 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 100.0 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 100.0 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 100.0 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 100.0 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 100.0 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 100.0 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 100.0 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 100.0 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 100.0 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 100.0 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 100.0 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 100.0 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 100.0 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 100.0 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 100.0 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 100.0 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 100.0 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.98 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.97 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.97 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.97 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.97 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.97 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.97 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.97 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.97 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.97 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.97 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.97 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.97 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.97 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.97 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.97 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.97 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.97 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.97 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.97 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 99.97 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.97 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.97 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.97 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.96 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.96 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.96 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.96 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.96 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.96 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.96 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.96 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.96 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.96 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.96 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.96 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.96 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.96 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.96 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.96 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.96 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.96 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.96 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.96 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.96 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.96 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.96 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.96 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.96 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.96 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.96 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.96 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.96 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.96 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.96 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.96 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.96 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.95 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.95 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 99.95 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.95 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.95 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.95 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.95 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.95 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 99.95 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.95 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.95 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.95 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.95 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.95 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.95 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.95 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 99.95 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.95 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.95 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.95 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.95 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.95 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.95 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.95 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.95 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.95 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.95 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.94 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.94 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.94 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.94 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.94 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.94 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.94 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.94 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.94 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.94 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.94 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.94 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.94 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.94 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.94 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.94 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.93 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.93 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.93 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.93 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.93 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.93 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.93 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.93 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.93 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.93 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.93 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.93 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.93 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.93 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.93 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.93 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.93 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.93 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.92 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.92 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.92 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.92 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.92 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.92 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.92 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.92 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.92 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.91 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.91 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.91 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.91 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.91 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.91 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.91 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.91 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.91 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.9 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.9 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.9 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.9 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.9 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.83 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.9 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.9 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.9 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.9 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.9 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.89 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.89 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.89 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.89 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.89 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.89 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.89 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.88 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.88 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.88 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.88 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.88 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.88 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.87 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.87 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.87 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.86 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.86 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.86 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.85 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.85 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.85 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.84 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.84 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.84 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.84 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.84 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.83 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.83 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.82 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.82 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.81 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.81 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.8 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.8 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.8 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.8 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 99.8 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.79 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.78 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.78 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.77 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.77 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.76 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.76 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 99.72 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.67 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.35 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.49 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.42 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.4 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.08 |
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-41 Score=344.31 Aligned_cols=372 Identities=21% Similarity=0.233 Sum_probs=300.9
Q ss_pred CeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHH
Q 010538 41 TVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVG 120 (508)
Q Consensus 41 ~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~ 120 (508)
+||||+++++++++.+++++.+. +...+.+|...+..+.......+++++++++++|++++ +|++|+|+|+|+.+++
T Consensus 1 ~iyld~~~~~~~~~~v~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~i~~~~g~~~a~~~~~ 77 (382)
T 4hvk_A 1 MAYFDYTSAKPVDERILEAMLPY-MTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGG--TVVFTSGATEANNLAI 77 (382)
T ss_dssp -CBCBTTTCCCCCHHHHHHHHHH-HHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTE--EEEEESSHHHHHHHHH
T ss_pred CEeecCCCcCCCCHHHHHHHHHH-HHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcC--eEEEECCchHHHHHHH
Confidence 48999999999999999887654 44567778776666666788899999999999999887 8999999999999999
Q ss_pred hhcCC---CCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCC
Q 010538 121 EAFPW---SHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP 197 (508)
Q Consensus 121 ~~l~~---~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~ 197 (508)
.++.. ++|++|+++..+|+++......++..|++++.+|.+.++.+ |+++++ +++
T Consensus 78 ~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~--~~i----- 135 (382)
T 4hvk_A 78 IGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEV---------------DVSFID--QKL----- 135 (382)
T ss_dssp HHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCB---------------CHHHHH--HHC-----
T ss_pred HHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCc---------------CHHHHH--HHh-----
Confidence 98843 78999999999999998887777788999999999876655 688888 554
Q ss_pred CCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccc
Q 010538 198 AGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIF 277 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~ 277 (508)
++++++|++++++||||.+.|+++|.++|++ +|+ +++|++|+.|..++++...++|++++|+||++
T Consensus 136 -~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~------------~~~-li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~ 201 (382)
T 4hvk_A 136 -RDDTILVSVQHANNEIGTIQPVEEISEVLAG------------KAA-LHIDATASVGQIEVDVEKIGADMLTISSNDIY 201 (382)
T ss_dssp -CTTEEEEECCSBCTTTCBBCCHHHHHHHHSS------------SSE-EEEECTTTBTTBCCCHHHHTCSEEEEESGGGT
T ss_pred -ccCceEEEEECCCCCceeeCCHHHHHHHHHH------------cCE-EEEEhHHhcCCCCCCchhcCCCEEEEeHHHhc
Confidence 4678999999999999999999999999998 999 99999999999888887778999999999988
Q ss_pred cCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHH
Q 010538 278 GYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRH 357 (508)
Q Consensus 278 g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~ 357 (508)
| |.|+|+++++++. .+.+.+.++.. ..++..++++...++++.++++++.+ +++++.++
T Consensus 202 g-~~g~g~~~~~~~~--~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~al~~~~~-~~~~~~~~ 260 (382)
T 4hvk_A 202 G-PKGVGALWIRKEA--KLQPVILGGGQ-----------------ENGLRSGSENVPSIVGFGKAAEITAM-EWREEAER 260 (382)
T ss_dssp S-CTTCEEEEEETTC--CCCCSSCSSCT-----------------GGGTSCSCCCHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred C-CCceEEEEEcCcc--CcCcccccCCC-----------------cCccccCCcCHHHHHHHHHHHHHHHh-hHHHHHHH
Confidence 8 8899999999876 45666555432 45567889999999999999887654 68999999
Q ss_pred HHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCch
Q 010538 358 IASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPG 437 (508)
Q Consensus 358 ~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~ 437 (508)
..++++++.+.|+++ ++++++.+... ..+++++|.+++. +..++.+.|.++||.+++|..|...
T Consensus 261 ~~~~~~~l~~~L~~~------~~~~~~~~~~~-----~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~g~~~~~~ 324 (382)
T 4hvk_A 261 LRRLRDRIIDNVLKI------EESYLNGHPEK-----RLPNNVNVRFSYI-----EGESIVLSLDMAGIQASTGSACSSK 324 (382)
T ss_dssp HHHHHHHHHHHHTTS------TTEEECSCSSS-----BCTTEEEEEETTC-----CHHHHHHHHHHTTCBCBCC------
T ss_pred HHHHHHHHHHHHhcC------CCeEEeCCccc-----cCCCEEEEEECCC-----CHHHHHHHHHHCCEEEeeCCccCCC
Confidence 999999999999987 47888876542 2356888988653 3346889999999999999888765
Q ss_pred HHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhhh
Q 010538 438 ACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQF 504 (508)
Q Consensus 438 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~~ 504 (508)
.. .+++.+..+|.. ....++++|++++.++|.+|++++++.|+++++.+..
T Consensus 325 ~~------~~~~~~~~~g~~----------~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~~~ 375 (382)
T 4hvk_A 325 TL------QPSHVLMACGLK----------HEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp --------CCCHHHHHTTCC----------HHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CC------cchHHHHHcCCC----------hhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 32 234444444421 0011578999999999999999999999998876554
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-40 Score=340.29 Aligned_cols=392 Identities=21% Similarity=0.270 Sum_probs=309.3
Q ss_pred chHHHHHHhhccCCC-----CCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCc-cchhhhhhHHHHHHHHHHHHHcC
Q 010538 25 SIDQIRATEFKRLEN-----GTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQ-SDISLATCDIVRAAREQVLDYFN 98 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~-----~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~r~~la~~~~ 98 (508)
++..+|+ +||.+.+ +.+|||+++.+++++.+++++.+ .+...+.+++.. +..++......+++++.++++++
T Consensus 4 ~~~~~r~-~f~~~~~~~~g~~~i~l~~~~~~~~~~~v~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~ 81 (406)
T 1kmj_A 4 SVDKVRA-DFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEAE-FYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFIN 81 (406)
T ss_dssp CHHHHHH-TCGGGGCEETTEECEECCTTTCCCCCHHHHHHHHH-HHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHH-hCcccccccCCCceEEecCCccCCCCHHHHHHHHH-HHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcC
Confidence 6788998 9999832 48999999999889988888755 444445566642 33344456778899999999999
Q ss_pred C-CCCCceEEEcCChHHHHHHHHhhcC---CCCCCeEEEecccccchH-HHHHHHHhcCCeEEEEccCCccCcccccccc
Q 010538 99 A-SMKDYKCIFTSGATAALKLVGEAFP---WSHQSSYMYTMENHNSVL-GIREYALSQGAAAFAIDVEEAVDNDGLSESL 173 (508)
Q Consensus 99 ~-~~~~~~i~~t~g~t~al~~~~~~l~---~~~g~~vl~~~~~h~s~~-~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~ 173 (508)
. +++ +|++|+|+|+|+++++.++. .++|++|+++...|++.. .+...++..|++++.+|.+.++.+
T Consensus 82 ~~~~~--~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------- 152 (406)
T 1kmj_A 82 ARSAE--ELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTL------- 152 (406)
T ss_dssp CSCGG--GEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCB-------
T ss_pred CCCCC--eEEEeCChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCCCCc-------
Confidence 9 566 89999999999999999983 578899999999998865 455556667999999998765544
Q ss_pred ccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEecccc
Q 010538 174 VTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKG 253 (508)
Q Consensus 174 ~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~ 253 (508)
|+++++ +++ ++++++|++++++|+||.++|+++|.++|++ +|+++|+|++|+
T Consensus 153 --------d~~~l~--~~l------~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~li~D~~~~ 204 (406)
T 1kmj_A 153 --------QLETLP--TLF------DEKTRLLAITHVSNVLGTENPLAEMITLAHQ------------HGAKVLVDGAQA 204 (406)
T ss_dssp --------CGGGHH--HHC------CTTEEEEEEESBCTTTCCBCCHHHHHHHHHH------------TTCEEEEECTTT
T ss_pred --------CHHHHH--HHh------ccCCeEEEEeCCCccccCcCCHHHHHHHHHH------------cCCEEEEEchhh
Confidence 577888 554 4578999999999999999999999999998 999999999999
Q ss_pred CCCCCCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCCh
Q 010538 254 CVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASF 333 (508)
Q Consensus 254 ~g~~~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~ 333 (508)
.|..++++...++|++++|+||++| |.|+|++++++++++.+.+...+|........... ........+++.|++++
T Consensus 205 ~g~~~~~~~~~~~d~~~~s~~K~~g-~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 281 (406)
T 1kmj_A 205 VMHHPVDVQALDCDFYVFSGHKLYG-PTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEG--TTWTKAPWRFEAGTPNT 281 (406)
T ss_dssp TTTSCCCHHHHTCSEEEEEGGGTTS-CTTCEEEEECHHHHHHCCCSSCSTTSEEEEETTTE--EEECCTTGGGCCSSCCH
T ss_pred cCCCCCcccccCCCEEEEEchhccC-CCCcEEEEEeHHHHhhcCCcccCCCceeecccccc--cccCCCchhccCCCCCH
Confidence 9988777766689999999999997 88899999999998888877666543221100000 00012235667889999
Q ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccC
Q 010538 334 LSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFG 413 (508)
Q Consensus 334 ~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 413 (508)
.+++++.++++++.+.+++.+.+++.++++++.+.|+++ ++++++.+. . ++++++|.+++. +
T Consensus 282 ~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------~~~~~~~~~-~------~~~~~~~~~~~~-----~ 343 (406)
T 1kmj_A 282 GGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESV------PDLTLYGPQ-N------RLGVIAFNLGKH-----H 343 (406)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTS------TTEEEESCT-T------CCSEEEEEETTC-----C
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcC------CCeEEecCC-C------cCCEEEEEECCC-----C
Confidence 999999889998877789999999999999999999987 368887653 1 278888887532 3
Q ss_pred HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHH
Q 010538 414 YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRC 493 (508)
Q Consensus 414 ~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~ 493 (508)
..++.+.|.++||.+++|..|..+.. +. +| .++++|||++.++|.+|++++++
T Consensus 344 ~~~~~~~l~~~gi~v~~g~~~~~~~~-~~-----------~g---------------~~~~iRis~~~~~t~~~i~~~~~ 396 (406)
T 1kmj_A 344 AYDVGSFLDNYGIAVRTGHHCAMPLM-AY-----------YN---------------VPAMCRASLAMYNTHEEVDRLVT 396 (406)
T ss_dssp HHHHHHHHHHTTEECEEECTTCHHHH-HH-----------TT---------------CSCEEEEECCTTCCHHHHHHHHH
T ss_pred HHHHHHHHhhCCcEEEeccccchHHH-Hh-----------cC---------------CCCeEEEEeecCCCHHHHHHHHH
Confidence 45688899999999999988876431 01 11 15789999999999999999999
Q ss_pred hhhhhhhhhh
Q 010538 494 SSFDFVNFSQ 503 (508)
Q Consensus 494 ~~~~~~~~~~ 503 (508)
.|++++++++
T Consensus 397 ~l~~~~~~l~ 406 (406)
T 1kmj_A 397 GLQRIHRLLG 406 (406)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhhC
Confidence 9999988753
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=344.37 Aligned_cols=375 Identities=16% Similarity=0.145 Sum_probs=298.3
Q ss_pred chHHHHHHhhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCc
Q 010538 25 SIDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDY 104 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~ 104 (508)
+++.+|+ +||.++++.+|||+++.+++++.+++++.+.+ ...+.+|.+.+..+.......+++++++++++|++++
T Consensus 12 ~~~~~r~-~fp~~~~~~~~ld~~~~~~~~~~v~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-- 87 (406)
T 3cai_A 12 DVARVRG-LHPSLGDGWVHFDAPAGMLIPDSVATTVSTAF-RRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPG-- 87 (406)
T ss_dssp CHHHHHH-TCTTTTSSCEECBGGGCCCCCHHHHHHHHHHH-HHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGG--
T ss_pred cHHHHHH-hhhhcCCCeEEEeCCCcCCCCHHHHHHHHHHH-HhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCC--
Confidence 8889998 99999445999999999999999988876544 4445566555554545567889999999999999877
Q ss_pred eEEEcCChHHHHHHHHhhc--CCCCCCeEEEecccccchHHHHHH-HHhcCCeEEEEccC-CccCccccccccccccccc
Q 010538 105 KCIFTSGATAALKLVGEAF--PWSHQSSYMYTMENHNSVLGIREY-ALSQGAAAFAIDVE-EAVDNDGLSESLVTSTKIS 180 (508)
Q Consensus 105 ~i~~t~g~t~al~~~~~~l--~~~~g~~vl~~~~~h~s~~~~~~~-~~~~G~~v~~v~~~-~~~~~~~l~~~~~~~~~~~ 180 (508)
+|++|+|+|+++.+++.++ ..++|++|+++..+|+++...+.. .+..|++++.+|.+ .++.+
T Consensus 88 ~v~~~~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~-------------- 153 (406)
T 3cai_A 88 GVVLGADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGEL-------------- 153 (406)
T ss_dssp GEEEESCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCC--------------
T ss_pred eEEEeCChHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCc--------------
Confidence 8999999999999999887 357889999999999987665443 34469999999987 45544
Q ss_pred cchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCC
Q 010538 181 LLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPD 260 (508)
Q Consensus 181 ~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d 260 (508)
|+++++ +++ +++|++|++++++|+||.+.|+++|.++|++ +|+++|+|++|+.|..+++
T Consensus 154 -d~~~l~--~~l------~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~li~D~a~~~g~~~~~ 212 (406)
T 3cai_A 154 -PTWQWE--SLI------SKSTRLVAVNSASGTLGGVTDLRAMTKLVHD------------VGALVVVDHSAAAPYRLLD 212 (406)
T ss_dssp -CGGGHH--HHC------CTTEEEEEEESBCTTTCBBCCCHHHHHHHHH------------TTCEEEEECTTTTTTCCCC
T ss_pred -CHHHHH--HHh------CCCceEEEEeCCcCCccccCCHHHHHHHHHH------------cCCEEEEEcccccCCCCCC
Confidence 577888 554 4578999999999999999999999999998 8999999999999988888
Q ss_pred CCCCCCcEEEEeccccccCCCcce-EEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHH
Q 010538 261 LSKYPVDFVVMSFYKIFGYPTGLG-ALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASI 339 (508)
Q Consensus 261 ~~~~~~D~~~~S~~K~~g~P~G~G-~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l 339 (508)
+..+++|++++|+||++| |. +| ++++++++++.+.+....++. ....++..||++..+++++
T Consensus 213 ~~~~~~d~~~~s~~K~~g-~~-~G~~~~~~~~~~~~l~~~~~~~~~---------------~~~~~~~~~t~~~~~~~a~ 275 (406)
T 3cai_A 213 IRETDADVVTVNAHAWGG-PP-IGAMVFRDPSVMNSFGSVSTNPYA---------------TGPARLEIGVHQFGLLAGV 275 (406)
T ss_dssp HHHHCCSEEEEEGGGGTS-CS-CEEEEESCHHHHHTSCCCCSCTTC---------------CGGGGGCCSCCCHHHHHHH
T ss_pred chhcCCCEEEeehhhhcC-CC-cCeEEEEehHHHhhcCCcccCCCC---------------CccccccCCCccHHHHHHH
Confidence 777789999999999988 85 89 999999888777765221110 0145567889999999999
Q ss_pred HHHHHHHHhcC--------------hHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEee
Q 010538 340 RHGFNLINSLT--------------VPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLK 405 (508)
Q Consensus 340 ~~al~~~~~~g--------------~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 405 (508)
.++++++.+.| ++.+.+++.++++++.+.|+++ ++++++.+... ++++++|.++
T Consensus 276 ~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------~~~~~~~~~~~------~~~~~~~~~~ 343 (406)
T 3cai_A 276 VASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSL------PLVMLIGRPEA------QIPVVSFAVH 343 (406)
T ss_dssp HHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------TTEEECCCCSS------BCSEEEEEET
T ss_pred HHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcC------CCeEEcCCccc------cCCEEEEEEC
Confidence 99999887755 6889999999999999999987 36888766432 2568888886
Q ss_pred CCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCH
Q 010538 406 RPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTF 485 (508)
Q Consensus 406 ~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ 485 (508)
+. +..++.+.|.++||.+++|.. ++++..+|.. ...+++|+|++.++|.
T Consensus 344 ~~-----~~~~~~~~L~~~gi~v~~g~~--------------~~~~~~~g~~------------~~~~~iRis~~~~~t~ 392 (406)
T 3cai_A 344 KV-----PADRVVQRLADNGILAIANTG--------------SRVLDVLGVN------------DVGGAVTVGLAHYSTM 392 (406)
T ss_dssp TB-----CHHHHHHHHHHTTEECEECCS--------------CHHHHHHTTT------------TTTCCEEEECCTTCCH
T ss_pred Cc-----CHHHHHHHHHHCCcEEecCCh--------------HHHHHHcCCC------------CCCCeEEEEeecCCCH
Confidence 42 345688889899999998751 1122223220 0147899999999999
Q ss_pred HHHHHHHHhhhhh
Q 010538 486 EDAKVNRCSSFDF 498 (508)
Q Consensus 486 eev~~l~~~~~~~ 498 (508)
+|+++++++|+++
T Consensus 393 e~i~~~~~~l~~~ 405 (406)
T 3cai_A 393 AEVDQLVRALASL 405 (406)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=341.74 Aligned_cols=355 Identities=14% Similarity=0.114 Sum_probs=274.8
Q ss_pred CeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCc---cchhhhhhHHHHHHHHHHHHHcCCCCCCceEEE-cCChHHHH
Q 010538 41 TVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQ---SDISLATCDIVRAAREQVLDYFNASMKDYKCIF-TSGATAAL 116 (508)
Q Consensus 41 ~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~-t~g~t~al 116 (508)
.--||.++++++|+.|++++.+ ++.++++|+.+. +..+..+.+.++++|+.+++++|++++ ++|+| |+|+|+++
T Consensus 13 ~~~~n~at~~~~p~~Vl~a~~~-~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~-~evif~t~~~T~a~ 90 (377)
T 3e77_A 13 LGTENLYFQSMLPHSVLLEIQK-ELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDN-YKVIFLQGGGCGQF 90 (377)
T ss_dssp --CCCEECSCCCCHHHHHHHHH-TSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTT-EEEEEESSHHHHHH
T ss_pred cccccccccCCCCHHHHHHHHH-HHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC-CeEEEEcCchHHHH
Confidence 4468999999999999999866 445666776654 344667889999999999999999653 38999 58999999
Q ss_pred HHHHhhcCC-CCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCC
Q 010538 117 KLVGEAFPW-SHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPER 195 (508)
Q Consensus 117 ~~~~~~l~~-~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~ 195 (508)
++++.++.. ++|+++++...+|.+. +|.+.+++.|..++.++.++.... ++++++ .+
T Consensus 91 n~a~~~l~~~~~Gd~v~~~~~g~~~~-~~~~~a~~~G~~~~~~~~~~~~~~---------------~~~~~~--~~---- 148 (377)
T 3e77_A 91 SAVPLNLIGLKAGRCADYVVTGAWSA-KAAEEAKKFGTINIVHPKLGSYTK---------------IPDPST--WN---- 148 (377)
T ss_dssp HHHHHHHGGGSTTCEEEECCCSHHHH-HHHHHHTTTSEEEECSCCCSSSCS---------------CCCGGG--CC----
T ss_pred HHHHHhccCCCCCCeEEEEECCHHHH-HHHHHHHHhCCceEEeccCCCcCC---------------CCChHH--hc----
Confidence 999999843 2378887776666553 677888888988888887654333 345556 33
Q ss_pred CCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccc
Q 010538 196 DPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYK 275 (508)
Q Consensus 196 ~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K 275 (508)
.+++|++|+++|..|.||+++|+ ++++ +|+++++|++|++|..|+|+.+++ ++++|+||
T Consensus 149 --i~~~t~lV~~~h~et~tG~~~pi-----i~~~------------~~~~~~vD~~q~~g~~~id~~~~~--~~~~s~~K 207 (377)
T 3e77_A 149 --LNPDASYVYYCANETVHGVEFDF-----IPDV------------KGAVLVCDMSSNFLSKPVDVSKFG--VIFAGAQK 207 (377)
T ss_dssp --CCTTCSCEEEESEETTTTEECSS-----CCCC------------TTCCEEEECTTTTTSSCCCGGGCS--EEEEEGGG
T ss_pred --cCCCccEEEEeCccCchheEchh-----hhcc------------CCCEEEEEcccccCCCCCchhhcC--EEEEeccc
Confidence 36789999999999999999998 4565 899999999999999999999876 68999999
Q ss_pred cccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhc-ChHHH
Q 010538 276 IFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSL-TVPAI 354 (508)
Q Consensus 276 ~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~i 354 (508)
++| |.|+|++++++++++.+.|..... .+|... .....+.+|||+.+++++.+|++++.+. |++.+
T Consensus 208 ~~g-p~G~g~l~~~~~~l~~~~~~~p~~---------~~~~~~---~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i 274 (377)
T 3e77_A 208 NVG-SAGVTVVIVRDDLLGFALRECPSV---------LEYKVQ---AGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAM 274 (377)
T ss_dssp TTS-CTTCEEEEEETTSCSCCCTTSCGG---------GCHHHH---HTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred ccC-CCccEEEEEcHHHHhhccCCCCch---------hhHHHH---hhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 997 999999999999987766543211 111111 1233457899999999999999999998 89999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCC-ccCHHHHHHHHhhCCCeeccCCC
Q 010538 355 CRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGS-WFGYREVEKLASLSGIQLRTGCF 433 (508)
Q Consensus 355 ~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~l~~~L~~~gI~v~~g~~ 433 (508)
.+|..++++++++.|++++ ++.+...... .+.+.+++|.+++.++. .++ ..+.+.|.++||.++.|..
T Consensus 275 ~~~~~~l~~~l~~~L~~~~------g~~~~~~~~~----~rs~~ivsf~~~~~~~~~~~~-~~~l~~l~~~Gi~~~~g~~ 343 (377)
T 3e77_A 275 EKLSSIKSQTIYEIIDNSQ------GFYVCPVEPQ----NRSKMNIPFRIGNAKGDDALE-KRFLDKALELNMLSLKGHR 343 (377)
T ss_dssp HHHHHHHHHHHHHHHHTST------TSEECCSCGG----GBCSSEEEEEESSTTCCHHHH-HHHHHHHHHTTEESCBCCT
T ss_pred HHHHHHHHHHHHHHHHhcC------CceecCCCHH----HcCCcEEEEEcCCCCCchhHH-HHHHHHHHHCCcEEeCCCC
Confidence 9999999999999999983 6765432211 12345799999886542 121 2356677789999888752
Q ss_pred CCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 434 CNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 434 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
..+.+|+|++++||.+||++++++|+++++-
T Consensus 344 -------------------------------------~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 344 -------------------------------------SVGGIRASLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp -------------------------------------TTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------cCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 1356999999999999999999999998753
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=335.06 Aligned_cols=372 Identities=21% Similarity=0.233 Sum_probs=295.0
Q ss_pred CeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHH
Q 010538 41 TVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVG 120 (508)
Q Consensus 41 ~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~ 120 (508)
++|||+++.+++++.+++++.+.+ .+.+++|++.+..+.......+++++++++++|++++ +|++|+|+|+|+.+++
T Consensus 1 ~~yld~~~~~~~~~~v~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~--~v~~~~g~t~a~~~~~ 77 (382)
T 4eb5_A 1 MAYFDYTSAKPVDERILEAMLPYM-TESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGG--TVVFTSGATEANNLAI 77 (382)
T ss_dssp -CBCBTTTCCCCCHHHHHHHHHHH-HTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTE--EEEEESSHHHHHHHHH
T ss_pred CeeeccCCCCCCCHHHHHHHHHHH-HhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCC--eEEEcCchHHHHHHHH
Confidence 479999999999999999886644 4455677665555555677889999999999999887 8999999999999999
Q ss_pred hhcC---CCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCC
Q 010538 121 EAFP---WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP 197 (508)
Q Consensus 121 ~~l~---~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~ 197 (508)
.++. .++|++|+++..+|+++......++..|++++.+|.+.++.+ |+++++ +++
T Consensus 78 ~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~--~~i----- 135 (382)
T 4eb5_A 78 IGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEV---------------DVSFID--QKL----- 135 (382)
T ss_dssp HHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCB---------------CHHHHH--HHC-----
T ss_pred HHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCcc---------------CHHHHH--HHh-----
Confidence 9984 267899999999999988777766667999999998765555 688888 555
Q ss_pred CCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccc
Q 010538 198 AGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIF 277 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~ 277 (508)
++++++|++++++||||.++|+++|.++|++ +|++ |+|++|++|..++++..+++|++++|+||++
T Consensus 136 -~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~-i~D~a~~~g~~~~~~~~~~~di~~~s~sK~~ 201 (382)
T 4eb5_A 136 -RDDTILVSVQHANNEIGTIQPVEEISEVLAG------------KAAL-HIDATASVGQIEVDVEKIGADMLTISSNDIY 201 (382)
T ss_dssp -CTTEEEEECCSBCTTTCBBCCHHHHHHHHTT------------SSEE-EEECTTTBTTBCCCHHHHTCSEEEEETGGGT
T ss_pred -cCCCeEEEEeccCCCccccCCHHHHHHHHHH------------CCCE-EEEcchhcCCcccCccccCCCEEEeehHHhc
Confidence 3578999999999999999999999999998 9999 9999999988887776667999999999998
Q ss_pred cCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHH
Q 010538 278 GYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRH 357 (508)
Q Consensus 278 g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~ 357 (508)
| |.|+|+++++++. .+.+.+.++.. ...+..++++...++++.++++++.+ +++.+.++
T Consensus 202 g-~~g~G~~~~~~~~--~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~al~~~~~-~~~~~~~~ 260 (382)
T 4eb5_A 202 G-PKGVGALWIRKEA--KLQPVILGGGQ-----------------ENGLRSGSENVPSIVGFGKAAEITAM-EWREEAER 260 (382)
T ss_dssp C-CSSCEEEEEETTC--CCCCSSCSSCT-----------------GGGTSCSCCCHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred C-CCceEEEEEcccc--ccCceecCCCc-----------------cccccCCCccHHHHHHHHHHHHHHHH-hHHHHHHH
Confidence 8 8899999998874 24554443321 23456788888888888889998766 58899999
Q ss_pred HHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCch
Q 010538 358 IASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPG 437 (508)
Q Consensus 358 ~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~ 437 (508)
+.++++++.+.|+++ ++++++.+... +.+++++|.+++. +..++.+.|.++||.+++|..|...
T Consensus 261 ~~~~~~~l~~~L~~~------~~~~~~~~~~~-----~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~g~~~~~~ 324 (382)
T 4eb5_A 261 LRRLRDRIIDNVLKI------EESYLNGHPEK-----RLPNNVNVRFSYI-----EGESIVLSLDMAGIQASTGSACSSK 324 (382)
T ss_dssp HHHHHHHHHHHHTTS------TTEEECSCSSS-----BCTTEEEEEETTS-----CHHHHHHHHHHHTCBCBCCCGGGTS
T ss_pred HHHHHHHHHHHHhhC------CCeEEeCCccc-----CCCCEEEEEeCCc-----CHHHHHHHHHHCCEEEeccccccCC
Confidence 999999999999987 36888765431 2367888888642 3456888888999999999877553
Q ss_pred HHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhhh
Q 010538 438 ACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQF 504 (508)
Q Consensus 438 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~~ 504 (508)
.. .+++++..+|... ....+.+|++++.++|.+|++++++.|+++++.++.
T Consensus 325 ~~------~~~~~~~~~g~~~----------~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (382)
T 4eb5_A 325 TL------QPSHVLMACGLKH----------EEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp SC------CCCHHHHHTTCCH----------HHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CC------cccHHHHHcCCCh----------hccCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 21 2334444443210 012578999999999999999999999998876554
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-41 Score=345.89 Aligned_cols=347 Identities=16% Similarity=0.110 Sum_probs=255.0
Q ss_pred CeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCc---cchhhhhhHHHHHHHHHHHHHcCCCCCCceEEE-cCChHHHH
Q 010538 41 TVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQ---SDISLATCDIVRAAREQVLDYFNASMKDYKCIF-TSGATAAL 116 (508)
Q Consensus 41 ~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~-t~g~t~al 116 (508)
.+|||+++++++|+.|++++.+ ++.++++||.+. ...+..+.+.++++|+.+++++|++.+ ++|+| |+|+|+++
T Consensus 27 ~~yl~~agpt~~p~~V~~a~~~-~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~-~evif~t~~~T~a~ 104 (386)
T 3qm2_A 27 QVFNFSSGPAMLPAEVLKLAQQ-ELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSN-YKVLFCHGGGRGQF 104 (386)
T ss_dssp CCEECCSSSCCCCHHHHHHHTC-C-----------------------CCHHHHHHHHHHHTCCTT-EEEEEEESCTTHHH
T ss_pred cCccccCCCCCCCHHHHHHHHH-HHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC-ceEEEEcCCchHHH
Confidence 5899999999999999999755 444556677653 234556678899999999999999642 38999 69999999
Q ss_pred HHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccC--CccC-ccccccccccccccccchhhhhcCCCCC
Q 010538 117 KLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVE--EAVD-NDGLSESLVTSTKISLLPIQRRKGASFP 193 (508)
Q Consensus 117 ~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~--~~~~-~~~l~~~~~~~~~~~~d~~~l~~~~~l~ 193 (508)
++++.++ +++|+++++...++.+. +|...+++.| +|..+|.+ ..+. + ++++++ .++
T Consensus 105 n~ai~~l-~~~gd~v~~~~~~~~~~-~~~~~a~~~G-~v~~v~~~~~~~G~~~---------------~~~~~~--~~l- 163 (386)
T 3qm2_A 105 AGVPLNL-LGDKTTADYVDAGYWAA-SAIKEAKKYC-APQIIDAKITVDGKRA---------------VKPMRE--WQL- 163 (386)
T ss_dssp HHHHHHH-CTTCCEEEEEESSHHHH-HHHHHHTTTS-EEEEEECEEEETTEEE---------------ECCGGG--CCC-
T ss_pred HHHHHhc-cCCCCeEEEEeCCHHHH-HHHHHHHHhC-CeEEEecCcccCCCCC---------------CchHHH--hhc-
Confidence 9999998 57788876555545443 6777777889 99999987 4443 3 456677 444
Q ss_pred CCCCCCCCceEEEEeCCCCCCccc-cCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEe
Q 010538 194 ERDPAGDAYNLFAFPSECNFSGSR-FNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMS 272 (508)
Q Consensus 194 ~~~~~~~~t~lv~~~~~~n~tG~~-~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S 272 (508)
+++|++|+++|+.|.||++ .|+++|. +|+++++|++|++|..|+|+++++ ++++|
T Consensus 164 -----~~~t~lV~~~h~et~tG~~i~pi~~i~-----------------~g~~~~vDa~qs~g~~pidv~~~~--~~~~s 219 (386)
T 3qm2_A 164 -----SDNAAYLHYCPNETIDGIAIDETPDFG-----------------PEVVVTADFSSTILSAPLDVSRYG--VIYAG 219 (386)
T ss_dssp -----CTTCSCEEECSEETTTTEECCCCCCCC-----------------TTCCEEEECTTTTTSSCCCGGGCS--EEEEE
T ss_pred -----CCCCcEEEEECCcCCcCEecCchhhhc-----------------CCCEEEEEcccccCCCCCCccccC--EEEEe
Confidence 5789999999999999996 8888874 499999999999999999999875 67799
Q ss_pred ccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhc-Ch
Q 010538 273 FYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSL-TV 351 (508)
Q Consensus 273 ~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~ 351 (508)
+|||+| |.|+|++|+++++++++.|..... .+|.. ..+.....||+|+++++++.+|++++.+. |+
T Consensus 220 ~hK~lG-P~G~g~l~v~~~~~~~~~~~~p~~---------~~~~~---~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~ 286 (386)
T 3qm2_A 220 AQKNIG-PAGLTLVIVREDLLGKAHESCPSI---------LDYTV---LNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGV 286 (386)
T ss_dssp TTTTTC-CTTEEEEEEEGGGCSCCCTTSCGG---------GCHHH---HHHC-------CCSHHHHHHHHHHHHHHHTHH
T ss_pred cccccC-CCccEEEEECHHHHhhhcccCCcH---------HHHHH---HhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCH
Confidence 999998 999999999999987776542210 01110 11234456899999999999999999998 89
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCceE-EEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeecc
Q 010538 352 PAICRHIASLGMYVRKVLLSLRHENGADVC-TIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRT 430 (508)
Q Consensus 352 ~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~ 430 (508)
+++.++..++++++++.|+++ ++ ....++. .+..++++|.+++. .++ ..+.+.|.++||.++.
T Consensus 287 ~~i~~~~~~l~~~l~~~l~~~-------~~~~~~~~~~-----~rs~~iv~f~~~~~---~~~-~~~~~~L~~~gI~~~~ 350 (386)
T 3qm2_A 287 AAMHKINQQKAELLYGVIDNS-------DFYRNDVAQA-----NRSRMNVPFQLADN---TLD-KVFLEESFAAGLHALK 350 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-------SSEECCBCGG-----GBCSSEEEEEESSG---GGH-HHHHHHHHHTTEECCB
T ss_pred HHHHHHHHHHHHHHHHHHHHC-------CCcccCCCHH-----HcCceEEEEECCCc---ccc-HHHHHHHHHCCCEEeC
Confidence 999999999999999999987 33 3222222 23357999999752 123 3467778999999988
Q ss_pred CCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 431 GCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 431 g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
|..| .+.+|+|++.+||.+||++++++|++|.+
T Consensus 351 g~~~-------------------------------------~~~iRiS~~~~~t~edId~l~~~l~~~~~ 383 (386)
T 3qm2_A 351 GHRV-------------------------------------VGGMRASIYNAMPIEGVKALTDFMIDFER 383 (386)
T ss_dssp CCTT-------------------------------------TCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCC-------------------------------------cCeEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 7644 24599999999999999999999998865
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-38 Score=324.09 Aligned_cols=378 Identities=19% Similarity=0.226 Sum_probs=289.9
Q ss_pred chHHHHHHhhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCc
Q 010538 25 SIDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDY 104 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~ 104 (508)
+++.+|+ +||.. ++.+|||+++.+++|+.+++++.+.+......++.+ +...........++++.+++++|++++
T Consensus 3 ~~~~~r~-~f~~~-~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~-~~~y~~~~~~~~~l~~~la~~~g~~~~-- 77 (390)
T 1elu_A 3 MITPSLH-QFPGL-ANKTYFNFGGQGILPTVALEAITAMYGYLQENGPFS-IAANQHIQQLIAQLRQALAETFNVDPN-- 77 (390)
T ss_dssp --------CCGGG-TTSEECCTTTCCCCCHHHHHHHHHHHHHHHHHCSSS-HHHHHHHHHHHHHHHHHHHHHTTSCGG--
T ss_pred chHHHHH-hcCCC-CCeEEecCCccCCCCHHHHHHHHHHHHHHhccCCcc-hhhHHHHHHHHHHHHHHHHHHcCCCHH--
Confidence 4667898 99998 899999999999888888888765443211112221 101111246678899999999999887
Q ss_pred eEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHH-HHHHHhcCCeEEEEccC--CccCcccccccccccccccc
Q 010538 105 KCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGI-REYALSQGAAAFAIDVE--EAVDNDGLSESLVTSTKISL 181 (508)
Q Consensus 105 ~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~-~~~~~~~G~~v~~v~~~--~~~~~~~l~~~~~~~~~~~~ 181 (508)
+|++|+|+|+|+.+++.++.+++|++|+++...|+++... ...++..|++++.+|.+ .+..+
T Consensus 78 ~v~~~~g~t~a~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~--------------- 142 (390)
T 1elu_A 78 TITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGD--------------- 142 (390)
T ss_dssp GEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSC---------------
T ss_pred HEEEeCChHHHHHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccc---------------
Confidence 8999999999999999998567889999999999887653 34456679999999986 33334
Q ss_pred chhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHc----CCccccccCCCCCCCeEEEEeccccCCCC
Q 010538 182 LPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKK----NPERILEISPFSKGRWMVLIDAAKGCVTQ 257 (508)
Q Consensus 182 d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~----~~~~~~~~~~~~~~g~~vivD~a~~~g~~ 257 (508)
|+++++ +++ ++++++|++++++||||.++|+++|.++|+ + +|+++|+|++|+.|..
T Consensus 143 d~~~l~--~~i------~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~------------~~~~li~Dea~~~g~~ 202 (390)
T 1elu_A 143 AAAVLA--NHL------GPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGN------------YPVRVLVDGAQSAGSL 202 (390)
T ss_dssp HHHHHH--TTC------CTTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSS------------SCCEEEEECTTTBTTB
T ss_pred hHHHHH--Hhc------CCCceEEEEeccccCCceecCHHHHHHHHhhhhhh------------cCcEEEEEcccccCCc
Confidence 688999 555 457899999999999999999999999999 7 8999999999999999
Q ss_pred CCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHH
Q 010538 258 PPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIA 337 (508)
Q Consensus 258 ~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~ 337 (508)
++++...++|++++|+||++++|.|+|++++++++++.+.+...|+++.........|. ......++..|+++...++
T Consensus 203 ~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 280 (390)
T 1elu_A 203 PLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTG--WAEGGKRFEVATSAYPQYA 280 (390)
T ss_dssp CCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEE--ECSGGGGGCCSCCCHHHHH
T ss_pred CCChhhcCCCEEEccccccccCCCceEEEEECHHhHhhcCCccccCCcccccccCcccc--cccchHhhCCCCCCHHHHH
Confidence 98888888999999999955548889999999999888887766665432211111110 0111345667889988888
Q ss_pred HHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHH
Q 010538 338 SIRHGFNLINSLT-VPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYRE 416 (508)
Q Consensus 338 ~l~~al~~~~~~g-~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 416 (508)
++.++++.+.+.+ ++++.++++++++++.+.|+++ ++++++.|... .+++++|+++.. .+..+
T Consensus 281 a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~------~g~~~~~~~~~------~~~~~~~~~~~~----~~~~~ 344 (390)
T 1elu_A 281 GLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQL------PHVHCLATSAP------QAGLVSFTVDSP----LGHRA 344 (390)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHS------TTEEESCSSCC------SSSEEEEEECSS----SCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhc------CCcEEecCccc------cccEEEEEcCCC----CCHHH
Confidence 8988999887655 8999999999999999999987 37888865311 278888888521 23456
Q ss_pred HHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhh
Q 010538 417 VEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 417 l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~ 496 (508)
+.+.|.++||.+++|. .++++|||++.++|.+|+++++++|+
T Consensus 345 ~~~~l~~~gi~v~~~~--------------------------------------~~~~iRis~~~~~~~~~i~~~~~~l~ 386 (390)
T 1elu_A 345 IVQKLEEQRIYLRTIA--------------------------------------DPDCIRACCHYITDEEEINHLLARLA 386 (390)
T ss_dssp HHHHHHHTTEECEEET--------------------------------------TTTEEEEECCTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHCCEEEEecC--------------------------------------CCCeEEEecccCCCHHHHHHHHHHHH
Confidence 8888989999998863 14789999999999999999999987
Q ss_pred hh
Q 010538 497 DF 498 (508)
Q Consensus 497 ~~ 498 (508)
++
T Consensus 387 ~~ 388 (390)
T 1elu_A 387 DF 388 (390)
T ss_dssp TC
T ss_pred hh
Confidence 64
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=330.90 Aligned_cols=393 Identities=21% Similarity=0.292 Sum_probs=307.0
Q ss_pred chHHHHHHhhccCCCC------CeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCC-ccchhhhhhHHHHHHHHHHHHHc
Q 010538 25 SIDQIRATEFKRLENG------TVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHS-QSDISLATCDIVRAAREQVLDYF 97 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~~------~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~ 97 (508)
.+..+|+ +||.+ ++ .+|||++..+++|+.+.+++.+ .+.....+++. .+..+.......+++++.+++++
T Consensus 9 ~~~~~r~-~f~~~-~~~~~g~~~i~l~~~~~~~~~~~v~~a~~~-~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~ 85 (420)
T 1t3i_A 9 LAATVRQ-DFPIL-NQEINGHPLVYLDNAATSQKPRAVLEKLMH-YYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFI 85 (420)
T ss_dssp HHHHHGG-GCGGG-SCEETTEECEECBTTTCCCCCHHHHHHHHH-HHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-hCCcc-ccccCCCceEEecCCccCCCCHHHHHHHHH-HHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHc
Confidence 7888998 99998 55 8999999999888888888755 44444455553 23333333567888999999999
Q ss_pred CC-CCCCceEEEcCChHHHHHHHHhhcC---CCCCCeEEEecccccchHH-HHHHHHhcCCeEEEEccCCccCccccccc
Q 010538 98 NA-SMKDYKCIFTSGATAALKLVGEAFP---WSHQSSYMYTMENHNSVLG-IREYALSQGAAAFAIDVEEAVDNDGLSES 172 (508)
Q Consensus 98 ~~-~~~~~~i~~t~g~t~al~~~~~~l~---~~~g~~vl~~~~~h~s~~~-~~~~~~~~G~~v~~v~~~~~~~~~~l~~~ 172 (508)
+. +++ +|++|+|+|+|+.+++.++. .++|++|+++...|++... +...++..|++++.+|.+.++.+
T Consensus 86 ~~~~~~--~v~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~------ 157 (420)
T 1t3i_A 86 NARSPR--EIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESF------ 157 (420)
T ss_dssp TCSCGG--GEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSB------
T ss_pred CCCCCC--eEEEcCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCCCCc------
Confidence 99 666 89999999999999999983 5788999999999988643 34455567999999998765545
Q ss_pred cccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccc
Q 010538 173 LVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAK 252 (508)
Q Consensus 173 ~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~ 252 (508)
|+++++ +++ ++++++|++++++||||.++|+++|.++|++ +|+++|+|++|
T Consensus 158 ---------d~~~l~--~~l------~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~li~D~a~ 208 (420)
T 1t3i_A 158 ---------DLEHFK--TLL------SEKTKLVTVVHISNTLGCVNPAEEIAQLAHQ------------AGAKVLVDACQ 208 (420)
T ss_dssp ---------CHHHHH--HHC------CTTEEEEEEESBCTTTCBBCCHHHHHHHHHH------------TTCEEEEECTT
T ss_pred ---------CHHHHH--Hhh------CCCceEEEEeCCcccccCcCCHHHHHHHHHH------------cCCEEEEEhhh
Confidence 688888 555 4578999999999999999999999999998 99999999999
Q ss_pred cCCCCCCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEeccc-chhhhhhccCccccccCCCC
Q 010538 253 GCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIA-DIDFVKRRQGVEELFEDGTA 331 (508)
Q Consensus 253 ~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~gt~ 331 (508)
+.|..++++...++|++++|+||++| |.|+|++++++++++.+.+...+|........ ...| .....++..|++
T Consensus 209 ~~~~~~~~~~~~~~di~~~s~sK~~~-~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 283 (420)
T 1t3i_A 209 SAPHYPLDVQLIDCDWLVASGHKMCA-PTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTT----GELPHKFEAGTP 283 (420)
T ss_dssp TTTTSCCCHHHHTCSEEEEEGGGTTS-CTTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEE----CCTTGGGCCSSC
T ss_pred ccCCccCchhhcCCCEEEEehhhhcC-CCceEEEEEchHHHhhcCceecCCCccccccccccCC----CCchhhccCCCc
Confidence 99988777777789999999999888 87899999999998888877655543221100 0001 122455667899
Q ss_pred ChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCc
Q 010538 332 SFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSW 411 (508)
Q Consensus 332 ~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 411 (508)
++.+.+++.++++++.+.+++.+.++.+++++++.+.|+++ ++++++.+.... ..++++++|.+++
T Consensus 284 ~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------~g~~~~~~~~~~---~~~~~~~~~~~~~----- 349 (420)
T 1t3i_A 284 AIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQI------PQLRLYGPNPKH---GDRAALASFNVAG----- 349 (420)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC------TTEEEESCCGGG---SCBCSEEEEEETT-----
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhC------CCeEEeCCCccc---cccCCEEEEEECC-----
Confidence 99999999889998877788999999999999999999987 378887664200 0127888888764
Q ss_pred cCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHH
Q 010538 412 FGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVN 491 (508)
Q Consensus 412 ~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l 491 (508)
.+..++.+.|.++||.+++|..|..+.. ..+| .++++|+|++.++|.+|++++
T Consensus 350 ~~~~~~~~~l~~~gi~v~~~~~~~~~~~------------~~~g---------------~~~~iRis~~~~~~~~~i~~~ 402 (420)
T 1t3i_A 350 LHASDVATMVDQDGIAIRSGHHCTQPLH------------RLFD---------------ASGSARASLYFYNTKEEIDLF 402 (420)
T ss_dssp BCHHHHHHHHHTTTEECBCSCTTCHHHH------------HHTT---------------CCCCEEEECCTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHCCeEEeeccccchHHH------------HhcC---------------CCCeEEEecCCCCCHHHHHHH
Confidence 2345688999999999999988865421 1111 157899999999999999999
Q ss_pred HHhhhhhhhhhh
Q 010538 492 RCSSFDFVNFSQ 503 (508)
Q Consensus 492 ~~~~~~~~~~~~ 503 (508)
+++|+++++.++
T Consensus 403 ~~~l~~~~~~~~ 414 (420)
T 1t3i_A 403 LQSLQATIRFFS 414 (420)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhc
Confidence 999999887654
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=335.04 Aligned_cols=375 Identities=17% Similarity=0.144 Sum_probs=279.7
Q ss_pred hccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChH
Q 010538 34 FKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGAT 113 (508)
Q Consensus 34 f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t 113 (508)
||...++.||||+++.+++++.+++++.+. +.+.+++|...+..+.......+++++++++++|++++ +|++|+|+|
T Consensus 14 ~~~~~~~~iyld~~~~~~~~~~v~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~--~v~~~~g~t 90 (400)
T 3vax_A 14 LVPRGSHMTYLDAAATTRVDQRVADIVLHW-MTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPD--ELIFTSGAT 90 (400)
T ss_dssp --------CCCCCCCCSSSCHHHHHHHHHH-HHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGG--GEEEESCHH
T ss_pred CCcccCCcEEecCCCCCCCCHHHHHHHHHH-HHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCC--cEEEeCCHH
Confidence 444448899999999999999998887654 44556777765555566678889999999999999987 899999999
Q ss_pred HHHHHHHhhcC---CCCCC-eEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcC
Q 010538 114 AALKLVGEAFP---WSHQS-SYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKG 189 (508)
Q Consensus 114 ~al~~~~~~l~---~~~g~-~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~ 189 (508)
+|+++++.++. .++|+ +|+++..+||++......++..|++++.+|.+.++.+ |+++++
T Consensus 91 ~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~-- 153 (400)
T 3vax_A 91 ESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPSGRI---------------SVEGVM-- 153 (400)
T ss_dssp HHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCTTCCC---------------CHHHHH--
T ss_pred HHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCCCCCc---------------CHHHHH--
Confidence 99999999983 16789 9999999999988877777778999999999876666 689999
Q ss_pred CCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEE
Q 010538 190 ASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFV 269 (508)
Q Consensus 190 ~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~ 269 (508)
+++ ++++++|++++++||||.+.|+++|.++|++ +|+++|+|++|+.|..++++... +|++
T Consensus 154 ~~i------~~~~~~v~~~~~~nptG~~~~l~~i~~la~~------------~~~~li~D~a~~~~~~~~~~~~~-~d~~ 214 (400)
T 3vax_A 154 ERL------RPDTLLVSLMHVNNETGVIQPVAELAQQLRA------------TPTYLHVDAAQGYGKVPGDLTTP-IDMI 214 (400)
T ss_dssp TTC------CTTEEEEECCSBCTTTCBBCCHHHHHHHHTT------------SSCEEEEECTTTTTTSGGGGGSC-CSEE
T ss_pred Hhc------CCCceEEEEECCCCCceeeCcHHHHHHHHHh------------cCCEEEEEhhhhcCCCCcChhhc-CcEE
Confidence 555 4678999999999999999999999999998 99999999999999988888877 9999
Q ss_pred EEeccccccCCCcceEEE-EechhH----hhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHH
Q 010538 270 VMSFYKIFGYPTGLGALI-MRNDAA----KLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFN 344 (508)
Q Consensus 270 ~~S~~K~~g~P~G~G~l~-~~~~~~----~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~ 344 (508)
++|+||++| |.|+|+++ ++++.+ ..+.+.+.++.. ...+..++++...++++.++++
T Consensus 215 ~~s~~K~~g-~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~a~~~al~ 276 (400)
T 3vax_A 215 SISGHKIGA-PKGVGALVTRRREEMDDERVPLEPIMFGGGQ-----------------ERKLRPGTLPVPLIMGLAEAAK 276 (400)
T ss_dssp EEETGGGTS-CSSCEEEEECBCSSSTTCBCCCCCSSCSSCT-----------------GGGTSCSCCCHHHHHHHHHHHH
T ss_pred EEeHHHhCC-CCceEEEEEecchhccccccccCceecCCCc-----------------eeeeecCCCCHHHHHHHHHHHH
Confidence 999999877 88999999 987322 234454443321 4456778999999999999999
Q ss_pred HHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhC
Q 010538 345 LINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLS 424 (508)
Q Consensus 345 ~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~ 424 (508)
++.+ +++++.++..++++++.+.|+ . ++++++.+... ..+++++|.+++. +..++.+.|. +
T Consensus 277 ~~~~-~~~~~~~~~~~~~~~l~~~L~-~------~~~~~~~~~~~-----~~~~~~~~~~~~~-----~~~~l~~~L~-~ 337 (400)
T 3vax_A 277 IFEA-EHAQWQVAAQDLRSRLLAGLA-S------TSFQVNGDQDH-----VVPHILNLSFEDV-----DAEAFLVTLK-D 337 (400)
T ss_dssp HHHH-SHHHHHHHHHHHHHHHHHHHT-T------TTCEECSCTTS-----BCTTEEEEECTTC-----CHHHHHHHHH-H
T ss_pred HHHh-hHHHHHHHHHHHHHHHHHhhC-C------CCEEEeCCccc-----CCCCEEEEEeCCC-----CHHHHHHHHh-c
Confidence 8765 689999999999999999998 5 47888876542 2357888888653 3346888999 9
Q ss_pred CCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEec-CCCCCHHHHHHHHHhhhhhhh
Q 010538 425 GIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSF-GYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 425 gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~-~~~~t~eev~~l~~~~~~~~~ 500 (508)
||.+++|..|..... .+++++.++|.. .....+++||++ +.++|.+|++++++.|+++++
T Consensus 338 gi~v~~g~~~~~~~~------~~~~~~~~~g~~----------~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~ 398 (400)
T 3vax_A 338 LVAVATGSASTSASF------TPSHVLRAMGLP----------EEAASKSLRFSWTPGQATDLDVEELARGVAKLKP 398 (400)
T ss_dssp HHHHTTTTEEEEEEE------CCHHHHHTTTCC----------HHHHTSEEEEEEEEC-------------------
T ss_pred CcEEEecccccCCCC------CccHHHHHcCCC----------ccccCceEEEEccCCCCCHHHHHHHHHHHHHHhc
Confidence 999999988765421 334455555431 001148999999 999999999999999988764
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-38 Score=322.52 Aligned_cols=370 Identities=20% Similarity=0.242 Sum_probs=286.1
Q ss_pred eeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHh
Q 010538 42 VYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGE 121 (508)
Q Consensus 42 iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~ 121 (508)
+|||+++.+++++.+++++.+.. .+.+.+|...+..++......+++++++++++|++++ +|++|+|+|+|+.+++.
T Consensus 3 ~yld~~~~~~~~~~v~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~--~v~~~~g~t~a~~~~~~ 79 (384)
T 1eg5_A 3 VYFDNNATTRVDDRVLEEMIVFY-REKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPS--EIFFTSCATESINWILK 79 (384)
T ss_dssp EECBTTTCCCCCHHHHHHHHHHH-HTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGG--GEEEESCHHHHHHHHHH
T ss_pred EEEecCccCCCCHHHHHHHHHHH-HhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCC--eEEEECCHHHHHHHHHH
Confidence 89999999999999999876644 4455666654455556678889999999999999887 89999999999999999
Q ss_pred hcCC---CCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCC
Q 010538 122 AFPW---SHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPA 198 (508)
Q Consensus 122 ~l~~---~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~ 198 (508)
++.. ++|++|+++...|+++......++..|.+++.+|.+.++.+ |+++++ +++
T Consensus 80 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~--~~i------ 136 (384)
T 1eg5_A 80 TVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVV---------------KLEELE--KLV------ 136 (384)
T ss_dssp HHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCB---------------CHHHHH--HHC------
T ss_pred hhhhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCcc---------------CHHHHH--HHh------
Confidence 9852 68899999999999887777666778999999998765545 688888 555
Q ss_pred CCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCC--eEEEEeccccCCCCCCCCCCCCCcEEEEecccc
Q 010538 199 GDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGR--WMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKI 276 (508)
Q Consensus 199 ~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g--~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~ 276 (508)
.+++++|++++++||||.++|+++|.++|++ +| +++|+|++|++|..++++..+++|++++|+||+
T Consensus 137 ~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~------------~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~ 204 (384)
T 1eg5_A 137 DEDTFLVSIMAANNEVGTIQPVEDVTRIVKK------------KNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKF 204 (384)
T ss_dssp CTTEEEEEEESBCTTTCBBCCHHHHHHHHHH------------HCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGG
T ss_pred CCCCeEEEEECCCCCcccccCHHHHHHHHHh------------cCCceEEEEEhhhhcCCcccCchhcCCCEEEecHHHh
Confidence 4578999999999999999999999999997 89 999999999998888888777899999999999
Q ss_pred ccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHH
Q 010538 277 FGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICR 356 (508)
Q Consensus 277 ~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~ 356 (508)
+| |.|+|+++++++. .+.+.+.++.. ...+..++++...++++.++++.+.+ +++++.+
T Consensus 205 ~g-~~G~G~~~~~~~~--~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~ 263 (384)
T 1eg5_A 205 HG-PKGVGITYIRKGV--PIRPLIHGGGQ-----------------ERGLRSGTQNVPGIVGAARAMEIAVE-ELSEAAK 263 (384)
T ss_dssp TS-CTTCEEEEECTTS--CCCCSBCSSCT-----------------TTTTBCSCCCHHHHHHHHHHHHHHHH-THHHHHH
T ss_pred cC-CCceEEEEEcCCC--ccccccccCcc-----------------cccccCCCCChHHHHHHHHHHHHHHH-hHHHHHH
Confidence 88 8889999999875 23444333211 22345678888888888889887644 5889999
Q ss_pred HHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCc
Q 010538 357 HIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNP 436 (508)
Q Consensus 357 ~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~ 436 (508)
++.++++++.+.|++. +++++.+... ..+.+++|.+++. +..++.+.|.++||.+++|..|..
T Consensus 264 ~~~~~~~~l~~~L~~~-------g~~~~~~~~~-----~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~g~~~~~ 326 (384)
T 1eg5_A 264 HMEKLRSKLVSGLMNL-------GAHIITPLEI-----SLPNTLSVSFPNI-----RGSTLQNLLSGYGIYVSTSSACTS 326 (384)
T ss_dssp HHHHHHHHHHHHHHTT-------TCEECSCTTS-----BCTTEEEEECTTC-----CHHHHHHHHHHTTEECBC------
T ss_pred HHHHHHHHHHHHhCCC-------CeEEeCCccc-----CCCCEEEEEeCCC-----CHHHHHHHHhhCCeEEeccccccC
Confidence 9999999999999874 6777765421 1257888887643 345688899999999999987754
Q ss_pred hHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhh
Q 010538 437 GACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 437 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~ 503 (508)
... .+++++.++|.. .....+++||+++.++|.+|++++++.|+++++.++
T Consensus 327 ~~~------~~~~~~~~~g~~----------~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 377 (384)
T 1eg5_A 327 KDE------RLRHVLDAMGVD----------RRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSFLD 377 (384)
T ss_dssp ------------CHHHHTTCC----------HHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred CCC------cchHHHHHcCCC----------hhhcCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 321 233444444421 000147899999999999999999999999876553
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-40 Score=346.59 Aligned_cols=392 Identities=14% Similarity=0.102 Sum_probs=294.1
Q ss_pred chHHHHHHhhccCC---------------CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCC-Cccchh-hhhhHHHH
Q 010538 25 SIDQIRATEFKRLE---------------NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPH-SQSDIS-LATCDIVR 87 (508)
Q Consensus 25 ~~~~~r~~~f~~~~---------------~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~ 87 (508)
.+..+|+ +|+... ++.+|||+++.++.|+.+.+++.+.+ .. |.+.. ..+..+ ..+....+
T Consensus 38 ~l~~~r~-~f~~~~~~~~~~~~~~~~~~~~~~iyld~~~~g~~p~~v~~~i~~~l-~~-~~~~~~~~~~~~~~~~~~~~~ 114 (465)
T 3e9k_A 38 KLRHFRE-CFYIPKIQDLPPVDLSLVNKDENAIYFLGNSLGLQPKMVKTYLEEEL-DK-WAKIAAYGHEVGKRPWITGDE 114 (465)
T ss_dssp TTGGGGG-GEECCBGGGSTTCCGGGSCTTCBCEECBTTTSCCEETTHHHHHHHHH-HH-HHHHGGGGGTSSSSCGGGTTH
T ss_pred cHHHHHH-hcCCCCcccccccccccccCCCCeEEecCCccCCChHHHHHHHHHHH-HH-HHhhCCcccccCCccHHHhHH
Confidence 3556888 998772 37899999999988887766554322 22 21111 011110 11234557
Q ss_pred HHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcC--CCCCCeEEEecccccchHH-HHHHHHhcCCeE-----EEEc
Q 010538 88 AAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFP--WSHQSSYMYTMENHNSVLG-IREYALSQGAAA-----FAID 159 (508)
Q Consensus 88 ~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~--~~~g~~vl~~~~~h~s~~~-~~~~~~~~G~~v-----~~v~ 159 (508)
++++++++++|++++ +|++|+|+|+++++++.++. ...+++|+++..+|++... +...++..|+++ ..+|
T Consensus 115 ~l~~~la~~~g~~~~--~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~ 192 (465)
T 3e9k_A 115 SIVGLMKDIVGANEK--EIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKP 192 (465)
T ss_dssp HHHGGGHHHHTCCGG--GEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECC
T ss_pred HHHHHHHHHcCCCcC--CEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEec
Confidence 789999999999988 89999999999999999983 2234569999999998766 444667788774 3445
Q ss_pred cCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCC
Q 010538 160 VEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPF 239 (508)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~ 239 (508)
.++++.+ |+++++ ++|+++ ++++++|++++++|+||.+.|+++|.++|++
T Consensus 193 ~~~~~~~---------------d~~~l~--~~i~~~---~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~---------- 242 (465)
T 3e9k_A 193 REGEETL---------------RIEDIL--EVIEKE---GDSIAVILFSGVHFYTGQHFNIPAITKAGQA---------- 242 (465)
T ss_dssp CTTCSSC---------------CHHHHH--HHHHHH---GGGEEEEEEESBCTTTCBBCCHHHHHHHHHH----------
T ss_pred CCCCCcc---------------CHHHHH--HHHHhc---CCCeEEEEEeCcccCcceeecHHHHHHHHHH----------
Confidence 5555555 578887 555321 2579999999999999999999999999998
Q ss_pred CCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccc-cCCCcceEEEEechhHhhhccccccCceEEeccc-chhhhh
Q 010538 240 SKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIF-GYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIA-DIDFVK 317 (508)
Q Consensus 240 ~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~-g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~-~~~~~~ 317 (508)
+|+++++|++|+.|..++++.++++||+++|+||++ ++|.|+|+++++++.++.+.+...||........ ......
T Consensus 243 --~g~~vi~D~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 320 (465)
T 3e9k_A 243 --KGCYVGFDLAHAVGNVELYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKL 320 (465)
T ss_dssp --TTCEEEEECTTTTTTSCCCHHHHTCCEEEECSSSTTCCCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCC
T ss_pred --cCCEEEEEhhhhcCCcCCchhhcCCCEEEECcccccccCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCc
Confidence 999999999999999999998889999999999988 3598899999999998888877666532110000 000000
Q ss_pred hccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccC----CCCCceEEEecCCCCCccc
Q 010538 318 RRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRH----ENGADVCTIYGTYTSEVSY 393 (508)
Q Consensus 318 ~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~----~~~~~~~~~~~~~~~~~~~ 393 (508)
.......+++.||+++.+++++.++++++.+.|+++++++..++++++.+.|+++.. ....++++++.|...
T Consensus 321 ~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~---- 396 (465)
T 3e9k_A 321 QLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHV---- 396 (465)
T ss_dssp CBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSG----
T ss_pred CcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCH----
Confidence 112346788899999999999999999999889999999999999999999987410 000137899887542
Q ss_pred CCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCc
Q 010538 394 HDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTG 473 (508)
Q Consensus 394 ~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (508)
..++++++|.++ .+... +.+.|.++||.++.+ .++
T Consensus 397 ~~~g~~~~~~~~-~~~~~-----l~~~L~~~Gi~v~~~---------------------------------------~~~ 431 (465)
T 3e9k_A 397 EERGCQLTITFS-VPNKD-----VFQELEKRGVVCDKR---------------------------------------NPN 431 (465)
T ss_dssp GGBCSCEEEEEC-CTTCC-----HHHHHHTTTEECEEE---------------------------------------TTT
T ss_pred hhcccEEEEEec-CCHHH-----HHHHHHHCCEEEecC---------------------------------------CCC
Confidence 245889999987 33333 788999999998632 157
Q ss_pred eEEEec-CCCCCHHHHHHHHHhhhhhhhhh
Q 010538 474 AIRVSF-GYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 474 ~iRis~-~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
++|+|+ +.++|.+||+++++.|+++++..
T Consensus 432 ~iRis~~~~~~t~edi~~~~~~l~~~l~~~ 461 (465)
T 3e9k_A 432 GIRVAPVPLYNSFHDVYKFTNLLTSILDSA 461 (465)
T ss_dssp EEEEBCCTTTCCHHHHHHHHHHHHHHHTC-
T ss_pred EEEEeCcccCCCHHHHHHHHHHHHHHHHhc
Confidence 999999 89999999999999999987654
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-38 Score=327.78 Aligned_cols=375 Identities=19% Similarity=0.228 Sum_probs=302.7
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhc--cccCCCCC-ccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTT--NVYGNPHS-QSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~a 115 (508)
++.+|||+++.+++++.+++++.+ .+. ..+++|.. .+..++......++++++++++++++++ +|++|+|+|+|
T Consensus 21 ~~~iyld~~~~~~~~~~v~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~--~v~~~~ggt~a 97 (423)
T 3lvm_A 21 KLPIYLDYSATTPVDPRVAEKMMQ-FMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPR--EIVFTSGATES 97 (423)
T ss_dssp CSSEECBTTTCCCCCHHHHHHHTT-SSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGG--GEEEESSHHHH
T ss_pred CCCEeecCCCcCCCCHHHHHHHHH-HHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCC--eEEEeCChHHH
Confidence 789999999999999999888755 444 45677776 5556666778889999999999999988 89999999999
Q ss_pred HHHHHhhcC---CCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCC
Q 010538 116 LKLVGEAFP---WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASF 192 (508)
Q Consensus 116 l~~~~~~l~---~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l 192 (508)
+.+++.++. .++|++|+++...|+++...+..++..|++++.+|.+.++.+ |+++++ +++
T Consensus 98 ~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~--~~i 160 (423)
T 3lvm_A 98 DNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGII---------------DLKELE--AAM 160 (423)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCC---------------CHHHHH--HHC
T ss_pred HHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCcc---------------CHHHHH--Hhc
Confidence 999998874 236899999999999988777766778999999999876655 688888 555
Q ss_pred CCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEe
Q 010538 193 PERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMS 272 (508)
Q Consensus 193 ~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S 272 (508)
.+++++|++++++||||.++|+++|.++|++ +|+++|+|++|+.+..++++...++|++++|
T Consensus 161 ------~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~li~Dea~~~~~~~~~~~~~~~di~~~s 222 (423)
T 3lvm_A 161 ------RDDTILVSIMHVNNEIGVVQDIAAIGEMCRA------------RGIIYHVDATQSVGKLPIDLSQLKVDLMSFS 222 (423)
T ss_dssp ------CTTEEEEECCSBCTTTCBBCCHHHHHHHHHH------------HTCEEEEECTTTTTTSCCCTTTSCCSEEEEE
T ss_pred ------CCCcEEEEEeCCCCCCccccCHHHHHHHHHH------------cCCEEEEEhhhhcCCCCcChhhcCCCEEEec
Confidence 4578999999999999999999999999998 8999999999999999899988899999999
Q ss_pred ccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChH
Q 010538 273 FYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVP 352 (508)
Q Consensus 273 ~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~ 352 (508)
+||++| |.|+|+++++++..+.+.+...+++. ...+..++++...++++.++++++.+. ++
T Consensus 223 ~sK~~g-~~g~G~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~a~~~al~~~~~~-~~ 283 (423)
T 3lvm_A 223 GHKIYG-PKGIGALYVRRKPRVRIEAQMHGGGH-----------------ERGMRSGTLPVHQIVGMGEAYRIAKEE-MA 283 (423)
T ss_dssp STTTTS-CSSCEEEEECBTTBCCCCCSSCSSCT-----------------TTTTCCSCCCHHHHHHHHHHHHHHHHH-HH
T ss_pred hHHhcC-CCCeEEEEEeccccCCCCccccCCcc-----------------cccccCCCCCHHHHHHHHHHHHHHHHH-HH
Confidence 999888 88899999999887777776555432 344567889999999998899987665 89
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCC
Q 010538 353 AICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGC 432 (508)
Q Consensus 353 ~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~ 432 (508)
++.++..++++++.+.|+++ ++++++.+... +.+++++|.+++. +..++.+.|.+ |.+++|.
T Consensus 284 ~~~~~~~~~~~~l~~~L~~~------~~~~~~~~~~~-----~~~~~~~~~~~~~-----~~~~l~~~l~~--i~v~~g~ 345 (423)
T 3lvm_A 284 TEMERLRGLRNRLWNGIKDI------EEVYLNGDLEH-----GAPNILNVSFNYV-----EGESLIMALKD--LAVSSGS 345 (423)
T ss_dssp HHHHHHHHHHHHHHHHHTTS------TTEEEESCSTT-----BCTTEEEEEETTS-----CHHHHHHHTTT--EECBCCC
T ss_pred HHHHHHHHHHHHHHHHHhcC------CCEEEeCCccc-----cCCCeEEEEeCCC-----CHHHHHHHHhh--heeccCc
Confidence 99999999999999999887 47888876542 2357888888543 33457788876 9999998
Q ss_pred CCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhhh
Q 010538 433 FCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQF 504 (508)
Q Consensus 433 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~~ 504 (508)
.|.+... .+++++..+|.. .....+.+|++++..+|.+|++++++.|+++++.++.
T Consensus 346 ~~~~~~~------~~~~~~~~~g~~----------~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~~~ 401 (423)
T 3lvm_A 346 ACTSASL------EPSYVLRALGLN----------DELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRD 401 (423)
T ss_dssp C-----C------CCCHHHHHHTCC----------HHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCCc------cccHHHHHhCCC----------ccccCceEEEECCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 8876421 233444445431 0012478999999999999999999999998876654
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-38 Score=319.74 Aligned_cols=346 Identities=14% Similarity=0.123 Sum_probs=264.3
Q ss_pred CeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCcc---chhhhhhHHHHHHHHHHHHHcCCCCCCceEEE-cCChHHHH
Q 010538 41 TVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQS---DISLATCDIVRAAREQVLDYFNASMKDYKCIF-TSGATAAL 116 (508)
Q Consensus 41 ~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~-t~g~t~al 116 (508)
.+|+=+++++++|+.|++++.+. +.++++||.+.+ ..+..+.+.++++|+.+++++|++.. ++|+| |+|+|+++
T Consensus 5 ~~~~f~pgpt~~~~~V~~a~~~~-~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~-~~v~f~t~~~T~a~ 82 (361)
T 3m5u_A 5 RKINFSAGPSTLPLEILEQAQKE-LCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDD-YEVLFLQGGASLQF 82 (361)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHT-SSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTT-EEEEEESSHHHHHH
T ss_pred ceEeecCCCCCCcHHHHHHHHHH-HHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCC-ceEEEEcCcHHHHH
Confidence 45666678888999999998664 445667776643 23556789999999999999999643 28998 99999999
Q ss_pred HHHHhhcCCCCCCe---EEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCC
Q 010538 117 KLVGEAFPWSHQSS---YMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFP 193 (508)
Q Consensus 117 ~~~~~~l~~~~g~~---vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~ 193 (508)
++++.++. ++++ |+++..+| +|...+++.|++|..++.++.+.... ++ + .
T Consensus 83 n~~~~~~~--~~~~~~~i~~~~~~~----~~~~~a~~~G~~v~~~~~~~~g~~~~-------------~~---~---~-- 135 (361)
T 3m5u_A 83 AMIPMNLA--LNGVCEYANTGVWTK----KAIKEAQILGVNVKTVASSEESNFDH-------------IP---R---V-- 135 (361)
T ss_dssp HHHHHHHC--CSSCEEEEECSHHHH----HHHHHHHHTTCCEEEEEECTTTTSCS-------------CC---C---C--
T ss_pred HHHHHhcC--CCCeEEEEeCCHHHH----HHHHHHHHcCCceEEEecccCcCCCc-------------CC---h---h--
Confidence 99999984 4553 33334433 56677778899999999987653100 01 1 1
Q ss_pred CCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEec
Q 010538 194 ERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSF 273 (508)
Q Consensus 194 ~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~ 273 (508)
. .+++|++|+++|..|.||.++|. +++ +|+++++|++|++|+.|+|+++ +|++++|+
T Consensus 136 --~-l~~~t~lv~~~~~e~~tG~~~~~-----i~~-------------~~~~~~vD~~q~~g~~~id~~~--~d~~~~s~ 192 (361)
T 3m5u_A 136 --E-FSDNADYAYICSNNTIYGTQYQN-----YPK-------------TKTPLIVDASSDFFSRKVDFSN--IALFYGGV 192 (361)
T ss_dssp --C-CCTTSSEEEEESEETTTTEECSS-----CCC-------------CSSCEEEECGGGTTSSCCCCTT--EEEEEEET
T ss_pred --h-cCCCCCEEEEeCCCCCcceeCCc-----ccc-------------cCCEEEEEcccccCCCCCCccc--CCEEEEec
Confidence 1 24689999999999999999882 333 4999999999999999999985 79999999
Q ss_pred cccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhc-ChH
Q 010538 274 YKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSL-TVP 352 (508)
Q Consensus 274 ~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~ 352 (508)
|||+| |.|+|++++++++++.+.|...+. ..+|... .......+|||+++++++.+|++++.+. |++
T Consensus 193 ~K~~g-p~G~g~l~~~~~~~~~~~~~~~p~--------~~~~~~~---~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~ 260 (361)
T 3m5u_A 193 QKNAG-ISGLSCIFIRKDMLERSKNKQIPS--------MLNYLTH---AENQSLFNTPPTFAIYMFNLEMDWLLNQGGLD 260 (361)
T ss_dssp TTTSS-CTTCEEEEEEHHHHHHHHTCCCCG--------GGCHHHH---HHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHH
T ss_pred hhccC-CCccEEEEEcHHHHhhhcCCCCCc--------eeehHHH---hhcCCCCCCccHHHHHHHHHHHHHHHHccCHH
Confidence 99998 999999999999988877631111 0111110 0233456899999999999999999998 899
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCceE-EEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccC
Q 010538 353 AICRHIASLGMYVRKVLLSLRHENGADVC-TIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTG 431 (508)
Q Consensus 353 ~i~~~~~~l~~~l~~~L~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g 431 (508)
++.+|..++++++++.|++++ ++ +++.++. .+..++++|.+++..+ ++ .++.+.|.++||.++.|
T Consensus 261 ~i~~~~~~l~~~l~~~L~~~~------g~~~~~~~~~-----~rs~~ivsf~~~~~~~--~~-~~~~~~L~~~gI~~~~g 326 (361)
T 3m5u_A 261 KVHEKNSQKATMLYECIDLSN------GFYKGHADKK-----DRSLMNVSFNIAKNKD--LE-PLFVKEAEEAGMIGLKG 326 (361)
T ss_dssp HHHHHHHHHHHHHHHHHHTST------TSEEESSCGG-----GBCSSEEEEEESSCTT--HH-HHHHHHHHHTTEECCBC
T ss_pred HHHHHHHHHHHHHHHHHHHCC------CeeeccCCHH-----HcCCeEEEEECCCchh--hh-HHHHHHHHHCCCEEecC
Confidence 999999999999999999883 34 5554432 2336799999986211 22 24778899999999887
Q ss_pred CCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 432 CFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 432 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
..+ .+.+|+|++.|||.+||++++++|++|.+-
T Consensus 327 ~~~-------------------------------------~g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 327 HRI-------------------------------------LGGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp CTT-------------------------------------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCc-------------------------------------cCeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 532 245999999999999999999999988753
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=319.72 Aligned_cols=368 Identities=12% Similarity=0.030 Sum_probs=283.5
Q ss_pred hhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 33 EFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 33 ~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
+||.+ ++.+|||+++.+++++.+++++.+ .+. + + .+.......+++++++++++|++++ +|++|+|+
T Consensus 2 ~fp~~-~~~~yl~~~~~~~~~~~v~~a~~~-~~~----~-~----~~~~~~~~~~~l~~~la~~~g~~~~--~v~~t~g~ 68 (392)
T 2z9v_A 2 RYPEH-ADPVITLTAGPVNAYPEVLRGLGR-TVL----Y-D----YDPAFQLLYEKVVDKAQKAMRLSNK--PVILHGEP 68 (392)
T ss_dssp CCCTT-SCCSEECSSSCCCCCHHHHHHTTS-CCC----C-T----TSHHHHHHHHHHHHHHHHHTTCSSC--CEEESSCT
T ss_pred CcccC-CCcceeecCCCcCCCHHHHHHHhc-ccc----c-c----ccHHHHHHHHHHHHHHHHHhCCCCC--EEEEeCCc
Confidence 69999 899999999999999988877643 221 1 1 1233456788999999999999877 89999999
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCC
Q 010538 113 TAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASF 192 (508)
Q Consensus 113 t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l 192 (508)
|+|+.+++.++ .++|++|+++..+|+++. +...++..|++++.+|.+.++.+ |+++++ +++
T Consensus 69 t~a~~~~~~~~-~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~--~~l 129 (392)
T 2z9v_A 69 VLGLEAAAASL-ISPDDVVLNLASGVYGKG-FGYWAKRYSPHLLEIEVPYNEAI---------------DPQAVA--DML 129 (392)
T ss_dssp HHHHHHHHHHH-CCTTCCEEEEESSHHHHH-HHHHHHHHCSCEEEEECCTTSCC---------------CHHHHH--HHH
T ss_pred hHHHHHHHHHh-cCCCCEEEEecCCcccHH-HHHHHHHcCCceEEeeCCCCCCC---------------CHHHHH--HHH
Confidence 99999999998 688999999998898874 55666667999999998765545 678887 554
Q ss_pred CCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEe
Q 010538 193 PERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMS 272 (508)
Q Consensus 193 ~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S 272 (508)
++ ++++++|++++++||||.++|+++|.++|++ +|+++|+|++|+.|..++++..+++|++++|
T Consensus 130 ~~----~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s 193 (392)
T 2z9v_A 130 KA----HPEITVVSVCHHDTPSGTINPIDAIGALVSA------------HGAYLIVDAVSSFGGMKTHPEDCKADIYVTG 193 (392)
T ss_dssp HH----CTTCCEEEEESEEGGGTEECCHHHHHHHHHH------------TTCEEEEECTTTBTTBSCCGGGGTCSEEEEC
T ss_pred hc----CCCCcEEEEeccCCCCceeccHHHHHHHHHH------------cCCeEEEEcccccCCcccccccccceEEEec
Confidence 21 3578999999999999999999999999998 9999999999999988888877789999999
Q ss_pred ccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccC-ccccccCCCCChhHHHHHHHHHHHHHhcCh
Q 010538 273 FYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQG-VEELFEDGTASFLSIASIRHGFNLINSLTV 351 (508)
Q Consensus 273 ~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~gt~~~~~~~~l~~al~~~~~~g~ 351 (508)
+||++++|.|+|+++++++.++.+++...|.+. ... .+...... ....+..++++...++++.++++++.+.|+
T Consensus 194 ~sK~~~~~~g~G~l~~~~~~~~~l~~~~~g~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~ 268 (392)
T 2z9v_A 194 PNKCLGAPPGLTMMGVSERAWAKMKANPLAPRA--SML---SIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGP 268 (392)
T ss_dssp SSSTTCCCSCCEEEEECHHHHHHHHTCTTSCCS--STT---CSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCH
T ss_pred CcccccCCCceeEEEECHHHHHHhhhccCCCCc--eec---cHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccH
Confidence 999766588999999999988777653211000 000 00000000 023455788999999999999998887789
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhC-CCeecc
Q 010538 352 PAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLS-GIQLRT 430 (508)
Q Consensus 352 ~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~-gI~v~~ 430 (508)
+++.++++++++++.+.|+++ +++++.++.. .+.+++++|.++.. .+..++.+.|.++ ||.+++
T Consensus 269 ~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~~----~~~~~~~~~~~~~~----~~~~~l~~~L~~~~gi~v~~ 333 (392)
T 2z9v_A 269 EAVWARHALTAKAMRAGVTAM-------GLSVWAASDS----IASPTTTAVRTPDG----VDEKALRQAARARYGVVFSS 333 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-------TCCBSSSSGG----GBCTTEEEEECCTT----CCHHHHHHHHHHHHCEECEE
T ss_pred HHHHHHHHHHHHHHHHHHHHc-------CCeeccCCcc----ccCCceEEEECCCC----CCHHHHHHHHHhcCCEEEec
Confidence 999999999999999999886 4666653221 12378888988531 2345688888886 999998
Q ss_pred CCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCC-CCCHHHHHHHHHhhhhhhhhhh
Q 010538 431 GCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGY-MSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 431 g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~t~eev~~l~~~~~~~~~~~~ 503 (508)
|..+. .++.+|+|++. ++|.+|++++++.|+++++.++
T Consensus 334 g~~~~-----------------------------------~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~~ 372 (392)
T 2z9v_A 334 GRGET-----------------------------------LGKLTRIGHMGPTAQPIYAIAALTALGGAMNAAG 372 (392)
T ss_dssp CCGGG-----------------------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCC-----------------------------------CCCeEEEeCcccccCHHHHHHHHHHHHHHHHHcC
Confidence 75310 25789999654 8999999999999998876543
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=318.25 Aligned_cols=388 Identities=20% Similarity=0.191 Sum_probs=285.4
Q ss_pred HHHHhhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEE
Q 010538 29 IRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIF 108 (508)
Q Consensus 29 ~r~~~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~ 108 (508)
.|..+||.+ ++.+|||+++.+++++.+++++.+.+ ...+.+|...+..+....+..+++++++++++|++++ +|++
T Consensus 8 ~~~~~~~~~-~~~~~Ld~~~~~~~~~~v~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~--~v~~ 83 (432)
T 3a9z_A 8 ARGSVESPP-NRKVYMDYNATTPLEPEVIQAVTEAM-KEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQ--DIIF 83 (432)
T ss_dssp -----------CCEECBTTTCCCCCHHHHHHHHHHH-HHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGG--GEEE
T ss_pred ccccccCCC-CCcEEeeCCccCCCCHHHHHHHHHHH-HHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcC--eEEE
Confidence 344479988 89999999999999999988876644 4456677766655556677889999999999999877 8999
Q ss_pred cCChHHHHHHHHhhcCC-------CCC-------------CeEEEecccccchHHHHHH-HHhcCCeEEEEccCC-ccCc
Q 010538 109 TSGATAALKLVGEAFPW-------SHQ-------------SSYMYTMENHNSVLGIREY-ALSQGAAAFAIDVEE-AVDN 166 (508)
Q Consensus 109 t~g~t~al~~~~~~l~~-------~~g-------------~~vl~~~~~h~s~~~~~~~-~~~~G~~v~~v~~~~-~~~~ 166 (508)
|+|+|+|+.+++.++.. ++| +.|+++..+|+++...+.. .+..|++++.+|.+. ++.+
T Consensus 84 ~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~ 163 (432)
T 3a9z_A 84 TSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQV 163 (432)
T ss_dssp ESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSC
T ss_pred eCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCc
Confidence 99999999999988730 345 5788888899988665554 455799999999875 4444
Q ss_pred cccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCC---
Q 010538 167 DGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGR--- 243 (508)
Q Consensus 167 ~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g--- 243 (508)
|+++++ +++ +++|++|++++++||||.++|+++|.++|++ +|
T Consensus 164 ---------------d~~~l~--~~i------~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~------------~~~~~ 208 (432)
T 3a9z_A 164 ---------------EVEDIL--AAV------RPTTCLVTIMLANNETGVIMPISEISRRIKA------------LNQIR 208 (432)
T ss_dssp ---------------CHHHHH--HTC------CTTEEEEECCSBCTTTCBBCCHHHHHHHHHH------------HHHHH
T ss_pred ---------------CHHHHH--Hhc------cCCceEEEEECcccCcccccCHHHHHHHHHh------------cCccc
Confidence 688888 555 4578999999999999999999999999997 78
Q ss_pred -------eEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCcceEEEEechh-HhhhccccccCceEEecccchhh
Q 010538 244 -------WMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDA-AKLLKNTYFSGGTVAASIADIDF 315 (508)
Q Consensus 244 -------~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~~~~~ 315 (508)
+++|+|++|+.|..++++...++|++++|+||++| |. +|+++++++. ...+.+.+.+++.
T Consensus 209 ~~~~~~~~~livDea~~~~~~~~~~~~~~~d~~~~s~~K~~g-~~-~G~~~~~~~~~~~~~~~~~~~~~~---------- 276 (432)
T 3a9z_A 209 AASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYG-PR-IGALYVRGVGKLTPLYPMLFGGGQ---------- 276 (432)
T ss_dssp HHHTCCCCEEEEECTTTTTTSCCCHHHHCCSEEEEEGGGTTC-CS-CEEEEETTBTTTBCCCCSCCSSCG----------
T ss_pred ccccCCceEEEEEchhhhCCcccChhhcCCCEEEEehhHhcC-Cc-ceEEEEccccccCCcCceeecCCc----------
Confidence 99999999999988888766689999999999998 87 9999999876 4445665555432
Q ss_pred hhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCC
Q 010538 316 VKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHD 395 (508)
Q Consensus 316 ~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~ 395 (508)
...+..++++...++++.++++++.+ +++++.+++.++++++.+.|+++++ ..+.+.++.... ..
T Consensus 277 -------~~~~~~~~~~~~~~~a~~aal~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~g----~~~~~~~~~~~~---~~ 341 (432)
T 3a9z_A 277 -------ERNFRPGTENTPMIAGLGKAADLVSE-NCETYEAHMRDIRDYLEERLEAEFG----KRIHLNSRFPGV---ER 341 (432)
T ss_dssp -------GGGTSCSCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHG----GGEEESSCCTTC---CB
T ss_pred -------cccccCCCcCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHhccC----CcEEEeCCCCcc---cC
Confidence 34567789999999999999998765 6899999999999999999988531 124444441100 12
Q ss_pred CCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceE
Q 010538 396 TGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAI 475 (508)
Q Consensus 396 ~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i 475 (508)
.+.+++|.+++.. .+...+.+.+ .||.++.|..|.+... ..+++++..+|... ....+++
T Consensus 342 ~~~~~~~~~~~~~---~~~~~~~~~l--~~i~~~~G~~~~~~~~-----~~~~~~l~~~g~~~----------~~~~~~i 401 (432)
T 3a9z_A 342 LPNTCNFSIQGSQ---LRGYMVLAQC--QTLLASVGASCHSDHE-----DRPSPVLLSCGIPV----------DVARNAV 401 (432)
T ss_dssp CTTEEEEEECSTT---CCHHHHHHHC--SSEECBSSCGGGGGGT-----TSCCHHHHHTTCCH----------HHHTTEE
T ss_pred CCCEEEEEeCCCC---CcHHHHHHHh--cCeEEeccccccCCCC-----CCccHHHHhcCCCc----------cccCceE
Confidence 2568889987632 1223344444 4899998887765321 01223333333200 0014789
Q ss_pred EEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 476 RVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 476 Ris~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
|||++.++|.+|++++++.|+++++.+
T Consensus 402 Ris~~~~~t~eei~~~~~~l~~~~~~~ 428 (432)
T 3a9z_A 402 RLSVGRSTTRAEVDLIVQDLKQAVNQL 428 (432)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999887654
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=310.62 Aligned_cols=370 Identities=14% Similarity=0.083 Sum_probs=286.8
Q ss_pred hHHHHHHhhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC-CCCc
Q 010538 26 IDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS-MKDY 104 (508)
Q Consensus 26 ~~~~r~~~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~~ 104 (508)
...+|+ +||.+ +..+|||+++.+++++.+.+++.+ ... + .+ +.......+++++.+++++|++ ++
T Consensus 7 ~~~~r~-~f~~~-~~~~~l~~~~~~~~~~~v~~a~~~-~~~----~---~~--~~~~~~~~~~~~~~la~~~g~~~~~-- 72 (386)
T 2dr1_A 7 EEAFKE-VYEMV-KPKYKLFTAGPVACFPEVLEIMKV-QMF----S---HR--SKEYRKVHMDTVERLREFLEVEKGE-- 72 (386)
T ss_dssp HHHHHH-HHHHH-SCCSEECCSSSCCCCHHHHHHTTS-CCC----C---TT--SHHHHHHHHHHHHHHHHHHTCSSSE--
T ss_pred hHHHHH-HHhhc-CccceeecCCCcCCcHHHHHHHhc-ccc----c---cc--CHHHHHHHHHHHHHHHHHhCCCCCc--
Confidence 457898 99988 678999999999999988877533 211 1 11 2224677889999999999997 55
Q ss_pred eEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchh
Q 010538 105 KCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPI 184 (508)
Q Consensus 105 ~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~ 184 (508)
++++|+|+|+|+.+++.++ .++|++|+++...|++. .+...++..|++++.+|.+.++.+ |++
T Consensus 73 ~v~~~~g~t~a~~~~~~~l-~~~gd~vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~---------------d~~ 135 (386)
T 2dr1_A 73 VLLVPSSGTGIMEASIRNG-VSKGGKVLVTIIGAFGK-RYKEVVESNGRKAVVLEYEPGKAV---------------KPE 135 (386)
T ss_dssp EEEESSCHHHHHHHHHHHH-SCTTCEEEEEESSHHHH-HHHHHHHHTTCEEEEEECCTTCCC---------------CHH
T ss_pred EEEEeCChHHHHHHHHHHh-hcCCCeEEEEcCCchhH-HHHHHHHHhCCceEEEecCCCCCC---------------CHH
Confidence 7999999999999999998 67899999998888763 144556667999999998765545 678
Q ss_pred hhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCC
Q 010538 185 QRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKY 264 (508)
Q Consensus 185 ~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~ 264 (508)
+++ +++++ ++++++|++++++||||.+.|+++|.++|++ +|+++|+|++|+.|..++++..+
T Consensus 136 ~l~--~~l~~----~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~li~D~a~~~~~~~~~~~~~ 197 (386)
T 2dr1_A 136 DLD--DALRK----NPDVEAVTITYNETSTGVLNPLPELAKVAKE------------HDKLVFVDAVSAMGGADIKFDKW 197 (386)
T ss_dssp HHH--HHHHH----CTTCCEEEEESEETTTTEECCHHHHHHHHHH------------TTCEEEEECTTTBTTBCCCTTTT
T ss_pred HHH--HHHhc----CCCCcEEEEEeecCCcchhCCHHHHHHHHHH------------cCCeEEEEccccccCcccccccc
Confidence 887 55421 3578999999999999999999999999998 99999999999999888888888
Q ss_pred CCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCcc-ccccCCCCChhHHHHHHHHH
Q 010538 265 PVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVE-ELFEDGTASFLSIASIRHGF 343 (508)
Q Consensus 265 ~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~gt~~~~~~~~l~~al 343 (508)
++|++++|+||++++|.|+|++++++++++.+.+....+.. . ++........ .....++++...++++.+++
T Consensus 198 ~~di~~~s~sK~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l 270 (386)
T 2dr1_A 198 GLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWY----F---DIPLYVKYLKEKESTPSTPPMPQVFGINVAL 270 (386)
T ss_dssp TCSEEEEETTSTTCCCSSCEEEEECHHHHHHHTTCTTCCST----T---CHHHHHHHHHHHSSCSSCCCHHHHHHHHHHH
T ss_pred CCcEEEEeccccccCCCceEEEEECHHHHHHHhcCCCCceE----E---eHHHHHHhhccCCCCCCCCCHHHHHHHHHHH
Confidence 89999999999988777899999999988777543111110 0 0100000001 23456788888899999999
Q ss_pred HHHHhc-ChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHh
Q 010538 344 NLINSL-TVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLAS 422 (508)
Q Consensus 344 ~~~~~~-g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~ 422 (508)
+.+.+. +++++.++++++++++.+.|+++ +++++.+... +.++++++.++.. .+..++.+.|.
T Consensus 271 ~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~~-----~~~~~~~~~~~~~----~~~~~~~~~l~ 334 (386)
T 2dr1_A 271 RIIEKMGGKEKWLEMYEKRAKMVREGVREI-------GLDILAEPGH-----ESPTITAVLTPPG----IKGDEVYEAMR 334 (386)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-------TCCBSSCTTC-----BCSSEEEEECCTT----CCHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-------CCeeCcCccc-----cCCceEEEEcCCC----CCHHHHHHHHH
Confidence 988776 78999999999999999999886 4666554321 2378899988632 23456888888
Q ss_pred hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 423 LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 423 ~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
++||.+++|..+. ..+++|+|++.++|.+|++++++.|+++++.+
T Consensus 335 ~~gi~v~~~~~~~-----------------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 379 (386)
T 2dr1_A 335 KRGFELAKGYGSV-----------------------------------KEKTFRIGHMGYMKFEDIQEMLDNLREVINEL 379 (386)
T ss_dssp HTTEECEECCGGG-----------------------------------TTTEEEEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HCCeEEecCcccc-----------------------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence 8899999875210 15789999999999999999999999887654
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=301.09 Aligned_cols=343 Identities=15% Similarity=0.045 Sum_probs=270.5
Q ss_pred eeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhh
Q 010538 43 YLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEA 122 (508)
Q Consensus 43 yld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~ 122 (508)
|+.+++.+++++.+++++.+.. . . + .++......+++++++++++|++++ ++++|+|+|+|+.+++.+
T Consensus 3 ~l~~~~p~~~~~~v~~a~~~~~-~----~-~----~~~~~~~~~~~l~~~la~~~g~~~~--~i~~~~g~t~a~~~~~~~ 70 (352)
T 1iug_A 3 WLLTPGPVRLHPKALEALARPQ-L----H-H----RTEAAREVFLKARGLLREAFRTEGE--VLILTGSGTLAMEALVKN 70 (352)
T ss_dssp EECSSSSCCCCHHHHHHHHSCC-C----C-T----TSHHHHHHHHHHHHHHHHHHTCSSE--EEEEESCHHHHHHHHHHH
T ss_pred ccccCCCCCCCHHHHHHhccCC-C----C-c----cCHHHHHHHHHHHHHHHHHhCCCCc--eEEEcCchHHHHHHHHHh
Confidence 7888888889999988875432 1 1 1 1233456788999999999999877 899999999999999999
Q ss_pred cCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCc
Q 010538 123 FPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAY 202 (508)
Q Consensus 123 l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t 202 (508)
+ .++|++|+++..+|+++. +...++..|++++.+|.+.++.+ |+++++ . +++
T Consensus 71 ~-~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~--------~---~~~ 122 (352)
T 1iug_A 71 L-FAPGERVLVPVYGKFSER-FYEIALEAGLVVERLDYPYGDTP---------------RPEDVA--------K---EGY 122 (352)
T ss_dssp H-CCTTCEEEEEECSHHHHH-HHHHHHHTTCEEEEEECCTTCCC---------------CTTTSC--------C---SSC
T ss_pred c-cCCCCeEEEEeCCchhHH-HHHHHHHcCCceEEEeCCCCCCC---------------CHHHHh--------c---cCC
Confidence 8 678999999999999887 66667778999999998765544 455666 2 567
Q ss_pred eEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC--CeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCC
Q 010538 203 NLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG--RWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYP 280 (508)
Q Consensus 203 ~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~--g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P 280 (508)
++|++++++||||.++|+++|.++|++ + |+++|+|++|++|..++++...++|++++|+||++++|
T Consensus 123 ~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~ 190 (352)
T 1iug_A 123 AGLLLVHSETSTGALADLPALARAFKE------------KNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCP 190 (352)
T ss_dssp SEEEEESEETTTTEECCHHHHHHHHHH------------HCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCC
T ss_pred cEEEEEEecCCcceecCHHHHHHHHHh------------hCCCCEEEEECCccccCcceeccccCeeEEEecCcccccCC
Confidence 999999999999999999999999997 8 99999999999998888877778999999999966558
Q ss_pred CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHH
Q 010538 281 TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIAS 360 (508)
Q Consensus 281 ~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~ 360 (508)
.|+|+++++++.++.+.+ .++. .+...+.. .....+..++++...++++.++++.+.+. ++++.+++++
T Consensus 191 ~g~G~~~~~~~~~~~~~~--~~~~-----~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~ 259 (352)
T 1iug_A 191 PGLGFVALSPRALERLKP--RGYY-----LDLARELK---AQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEHLALKAW 259 (352)
T ss_dssp SCEEEEEECHHHHHTCCC--CSST-----TCHHHHHH---HHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHHHHHHH
T ss_pred CceeEEEECHHHHHHhhC--CCce-----eeHHHHHh---hcccCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 899999999988766554 1110 00000000 01224456888999999999999987665 8899999999
Q ss_pred HHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHH
Q 010538 361 LGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACA 440 (508)
Q Consensus 361 l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~ 440 (508)
+++++.+.|+++ +++++.+.. .+++++|.+++. .+..++.+.|.++||.+++|..+ .
T Consensus 260 ~~~~l~~~L~~~-------g~~~~~~~~-------~~~~~~~~~~~~----~~~~~~~~~l~~~gi~v~~~~~~---~-- 316 (352)
T 1iug_A 260 QNALLYGVGEEG-------GLRPVPKRF-------SPAVAAFYLPEG----VPYARVKEAFAQRGAVIAGGQGP---L-- 316 (352)
T ss_dssp HHHHHHHHHHHT-------TCEESCSSB-------CTTCEEEECCTT----CCHHHHHHHHHTTTEECEECCGG---G--
T ss_pred HHHHHHHHHHHC-------CCccccccc-------CCeEEEEEcCCC----CCHHHHHHHHHHCCEEEEeCCCc---c--
Confidence 999999999886 577765531 278999998631 33456888898899999987521 0
Q ss_pred hhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 441 KYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 441 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
.++++|++++.++|.+|+++++++|+++++.
T Consensus 317 ------------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 347 (352)
T 1iug_A 317 ------------------------------KGKVFRLSLMGAYDRYEALGVAGMFREVLEE 347 (352)
T ss_dssp ------------------------------TTTEEEECCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------CCCEEEEEccccCCHHHHHHHHHHHHHHHHH
Confidence 2578999999999999999999999988754
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-36 Score=307.40 Aligned_cols=371 Identities=11% Similarity=0.048 Sum_probs=282.1
Q ss_pred HHHHhhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEE
Q 010538 29 IRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIF 108 (508)
Q Consensus 29 ~r~~~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~ 108 (508)
.++ +||.+.++.+|+++.+..++++.+++++.+.. . . + + ........+++++++++++|+++++ +|++
T Consensus 8 ~~~-~~~~~~~~~~~~~~~g~~~~~~~v~~a~~~~~-~----~-~--~--~~~~~~~~~~l~~~la~~~g~~~~~-~i~~ 75 (393)
T 2huf_A 8 PAV-LREPLVTPNKLLMGPGPSNAPQRVLDAMSRPI-L----G-H--L--HPETLKIMDDIKEGVRYLFQTNNIA-TFCL 75 (393)
T ss_dssp CGG-GGSCCCCCCCEECSSSCCCCCHHHHHHTTSCC-C----C-T--T--SHHHHHHHHHHHHHHHHHHTCCCSE-EEEE
T ss_pred hhh-hhcccCCCCeEEecCCCCCCCHHHHHHHHhhh-c----c-C--C--CHHHHHHHHHHHHHHHHHhCCCCCc-EEEE
Confidence 566 89999888999999998888998887764322 1 1 1 1 1224567889999999999997642 6999
Q ss_pred cCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhc
Q 010538 109 TSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRK 188 (508)
Q Consensus 109 t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~ 188 (508)
|+|+|+|+.+++.++ .++|++|+++...|+++ .+...++..|.+++.+|.+.++.+ |+++++
T Consensus 76 ~~g~t~a~~~~~~~~-~~~gd~vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~- 137 (393)
T 2huf_A 76 SASGHGGMEATLCNL-LEDGDVILIGHTGHWGD-RSADMATRYGADVRVVKSKVGQSL---------------SLDEIR- 137 (393)
T ss_dssp SSCHHHHHHHHHHHH-CCTTCEEEEEESSHHHH-HHHHHHHHTTCEEEEEECCTTCCC---------------CHHHHH-
T ss_pred cCcHHHHHHHHHHHH-hCCCCEEEEECCCcchH-HHHHHHHHcCCeeEEEeCCCCCCC---------------CHHHHH-
Confidence 999999999999998 67899999999888875 355566678999999998765544 577887
Q ss_pred CCCCCCCCCCCC-CceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCc
Q 010538 189 GASFPERDPAGD-AYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVD 267 (508)
Q Consensus 189 ~~~l~~~~~~~~-~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D 267 (508)
+++ ++ ++++|++++++||||.++|+++|.++|++ +|+++|+|++|++|..++++..+++|
T Consensus 138 -~~i------~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~------------~~~~li~D~a~~~~~~~~~~~~~~~d 198 (393)
T 2huf_A 138 -DAL------LIHKPSVLFLTQGDSSTGVLQGLEGVGALCHQ------------HNCLLIVDTVASLGGAPMFMDRWEID 198 (393)
T ss_dssp -HHH------HHHCCSEEEEESEETTTTEECCCTTHHHHHHH------------TTCEEEEECTTTBTTBCCCTTTTTCS
T ss_pred -HHH------hccCCcEEEEEccCCCccccCCHHHHHHHHHH------------cCCEEEEEcccccCCCCcchhhcCcc
Confidence 444 34 68999999999999999999999999998 89999999999999988888878899
Q ss_pred EEEEeccccccCCCcceEEEEechhHhhhcccc---ccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHH
Q 010538 268 FVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTY---FSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFN 344 (508)
Q Consensus 268 ~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~ 344 (508)
++++|+||++++|.|+|++++++++++.+.+.- ..+.. .. .....+. ......++..++++...++++.++++
T Consensus 199 ~~~~s~sK~l~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~al~ 274 (393)
T 2huf_A 199 AMYTGSQKVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYW-DM-SLVGDYW--GCFGRPRIYHHTISSTLLYGLREAIA 274 (393)
T ss_dssp EEECCSSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCGGG-CH-HHHHHHT--TCSSSCCCCSCCCCHHHHHHHHHHHH
T ss_pred EEEECCCcccccCCCeEEEEECHHHHHHHhhcCCCCceEEE-ch-HHHHhhh--ccccccCCCCCCCCHHHHHHHHHHHH
Confidence 999999997655889999999998887765431 11000 00 0000000 00113456778999999999999999
Q ss_pred HHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhh-
Q 010538 345 LINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASL- 423 (508)
Q Consensus 345 ~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~- 423 (508)
++.+.+++++.+++.++++++.+.|+++ +++++.+... +.+.++++.++.. .+..++.+.|.+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~~-----~~~~~~~~~~~~~----~~~~~~~~~L~~~ 338 (393)
T 2huf_A 275 MACEEGLPALIARHEDCAKRLYRGLQDA-------GFELYADPKD-----RLSTVTTIKVPQG----VDWLKAAQYAMKT 338 (393)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHT-------TCCBSSCGGG-----BCTTEEEEECCTT----CCHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHc-------CCeeccCccc-----cCCcEEEEEcCCC----CCHHHHHHHHHHh
Confidence 8877689999999999999999999886 4666654321 1245888888521 234457777765
Q ss_pred CCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC-CCHHHHHHHHHhhhhhhhhh
Q 010538 424 SGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM-STFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 424 ~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~-~t~eev~~l~~~~~~~~~~~ 502 (508)
+||.+++|..|. .++++||+++.+ ++.+|+++++++|+++++.+
T Consensus 339 ~gi~v~~g~~~~-----------------------------------~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~ 383 (393)
T 2huf_A 339 YLVEISGGLGPT-----------------------------------AGQVFRIGLMGQNATTERVDRVLQVFQEAVAAV 383 (393)
T ss_dssp HCEECBCCCGGG-----------------------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEecCcccc-----------------------------------cCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHc
Confidence 599999876331 157899999655 57999999999999887654
Q ss_pred h
Q 010538 503 Q 503 (508)
Q Consensus 503 ~ 503 (508)
+
T Consensus 384 ~ 384 (393)
T 2huf_A 384 K 384 (393)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-36 Score=310.69 Aligned_cols=374 Identities=15% Similarity=0.109 Sum_probs=279.2
Q ss_pred chHHHHHHhhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCc
Q 010538 25 SIDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDY 104 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~ 104 (508)
++..+|+ +||.+ ++.+|||+++.+++|+.+.+++.+.+ ...++++..............+++++++++++|++++
T Consensus 15 ~~~~~r~-~f~~~-~~~~yld~~~~~~~~~~v~~a~~~~l-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-- 89 (416)
T 1qz9_A 15 SLAPLRQ-QFALP-EGVIYLDGNSLGARPVAALARAQAVI-AEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDG-- 89 (416)
T ss_dssp TTGGGGG-GBCCC-TTCEECCTTTSCCCBTTHHHHHHHHH-HTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTT--
T ss_pred hhHHHHH-hCCCC-CCeEeecCCCcCCCcHHHHHHHHHHH-HHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcc--
Confidence 6788998 99998 89999999999988888888876644 3334444221011112246678899999999999887
Q ss_pred eEEEcCChHHHHHHHHhhcC-C----CCCCe-EEEecccccchHHHHHH-HHhc--CCeEEEEccCCccCcccccccccc
Q 010538 105 KCIFTSGATAALKLVGEAFP-W----SHQSS-YMYTMENHNSVLGIREY-ALSQ--GAAAFAIDVEEAVDNDGLSESLVT 175 (508)
Q Consensus 105 ~i~~t~g~t~al~~~~~~l~-~----~~g~~-vl~~~~~h~s~~~~~~~-~~~~--G~~v~~v~~~~~~~~~~l~~~~~~ 175 (508)
+|++|+|+++++.+++.++. + ++|+. |+++...|+++...+.. .+.. |++++.+|. ++
T Consensus 90 ~v~~~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~-----~~-------- 156 (416)
T 1qz9_A 90 EVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS-----PE-------- 156 (416)
T ss_dssp SEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS-----GG--------
T ss_pred cEEEeCChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc-----HH--------
Confidence 89999999999988887762 3 56764 77777899987665443 3334 899999886 32
Q ss_pred ccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCC
Q 010538 176 STKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCV 255 (508)
Q Consensus 176 ~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g 255 (508)
+++ +++ ++++++|++++++|+||.+.|+++|.++|++ +|+++|+|++|++|
T Consensus 157 ---------~l~--~~i------~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~li~D~a~~~g 207 (416)
T 1qz9_A 157 ---------ELP--QAI------DQDTAVVMLTHVNYKTGYMHDMQALTALSHE------------CGALAIWDLAHSAG 207 (416)
T ss_dssp ---------GHH--HHC------STTEEEEEEESBCTTTCBBCCHHHHHHHHHH------------HTCEEEEECTTTTT
T ss_pred ---------HHH--HHh------CCCceEEEEeccccCcccccCHHHHHHHHHH------------cCCEEEEEcccccc
Confidence 234 333 3578999999999999999999999999998 89999999999999
Q ss_pred CCCCCCCCCCCcEEEEeccccccCCCcc-eEEEEechhHhhhccccccCceEEeccc-chhhhhhccCccccccCCCCCh
Q 010538 256 TQPPDLSKYPVDFVVMSFYKIFGYPTGL-GALIMRNDAAKLLKNTYFSGGTVAASIA-DIDFVKRRQGVEELFEDGTASF 333 (508)
Q Consensus 256 ~~~~d~~~~~~D~~~~S~~K~~g~P~G~-G~l~~~~~~~~~l~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~gt~~~ 333 (508)
..++++..+++|++++|+||+++++.|+ |++++++++++.+.+...|+.......+ ...+. ......++..|+++.
T Consensus 208 ~~~~~~~~~~~d~~~~s~~K~l~~g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 285 (416)
T 1qz9_A 208 AVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYE--PSNGIARYLCGTQPI 285 (416)
T ss_dssp TSCCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCC--BCSSGGGGCCSCCCH
T ss_pred CcCCChhhcCCCEEEecCcccCCCCCCCeEEEEECHHHHhccCCCccccCccccccCCCCccC--CCcchHHhcCCCCCH
Confidence 8888776667999999999986435566 9999999988777775544311000000 00000 011234567789999
Q ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCc--eEEEecCCCCCcccCCCCceEEEEeeCCCCCc
Q 010538 334 LSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGAD--VCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSW 411 (508)
Q Consensus 334 ~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 411 (508)
..++++.++++.+.+.+++++.+++.++++++.+.|+++. + +++++.+... ..+++++++.+++
T Consensus 286 ~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-----~~~g~~~~~~~~~----~~~~~~~~~~~~~----- 351 (416)
T 1qz9_A 286 TSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRC-----AAHELTLVTPREH----AKRGSHVSFEHPE----- 351 (416)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHH-----TTSCCEECSCSSG----GGBCSEEEEECTT-----
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhc-----cCCCeEEeCCCCH----HHcCCEEEEecCC-----
Confidence 9999999999988767899999999999999999998751 2 5777765421 0236788888753
Q ss_pred cCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecC-CCCCHHHHHH
Q 010538 412 FGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFG-YMSTFEDAKV 490 (508)
Q Consensus 412 ~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~-~~~t~eev~~ 490 (508)
..++.+.|.++||.+... ..+.+|+|++ +++|.+|+++
T Consensus 352 --~~~l~~~l~~~gi~~~~~---------------------------------------~~~~lRis~~~~~~t~~~i~~ 390 (416)
T 1qz9_A 352 --GYAVIQALIDRGVIGDYR---------------------------------------EPRIMRFGFTPLYTTFTEVWD 390 (416)
T ss_dssp --HHHHHHHHHTTTEECEEE---------------------------------------TTTEEEEECCTTTCCHHHHHH
T ss_pred --HHHHHHHHHhCCcEeccC---------------------------------------CCCeEEEeCcccCCCHHHHHH
Confidence 235888888999986431 1578999998 6999999999
Q ss_pred HHHhhhhhhhhh
Q 010538 491 NRCSSFDFVNFS 502 (508)
Q Consensus 491 l~~~~~~~~~~~ 502 (508)
+++.|+++++..
T Consensus 391 ~~~~l~~~~~~~ 402 (416)
T 1qz9_A 391 AVQILGEILDRK 402 (416)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHhcc
Confidence 999999987653
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=294.55 Aligned_cols=355 Identities=13% Similarity=0.102 Sum_probs=269.1
Q ss_pred eeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC-CCCceEEEcCChHHHHHHHH
Q 010538 42 VYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS-MKDYKCIFTSGATAALKLVG 120 (508)
Q Consensus 42 iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~~~i~~t~g~t~al~~~~ 120 (508)
.++.+.+...+++.+++++.+.+.....+.. ..+....+..+++++++++++|++ ++ +|++|+|+|+|+.+++
T Consensus 5 ~~~~~p~p~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~la~~~g~~~~~--~v~~~~g~t~al~~~~ 78 (362)
T 3ffr_A 5 KIYFTPGPSELYPTVRQHMITALDEKIGVIS----HRSKKFEEVYKTASDNLKTLLELPSNY--EVLFLASATEIWERII 78 (362)
T ss_dssp CEEECSSSCCCCTTHHHHHHHHHHTTTTTSC----TTSHHHHHHHHHHHHHHHHHTTCCTTE--EEEEESCHHHHHHHHH
T ss_pred ceeccCCCcCCCHHHHHHHHHHhcCCccCcC----CCCHHHHHHHHHHHHHHHHHhCCCCCc--EEEEeCCchHHHHHHH
Confidence 3556666777788898877665533221111 123345678889999999999985 45 8999999999999999
Q ss_pred hhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCC
Q 010538 121 EAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGD 200 (508)
Q Consensus 121 ~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~ 200 (508)
.++. ++ +.+++. ..|.+ ..+...++..|++++.++.+.+..+ |+++++ .++
T Consensus 79 ~~l~-~~-~~i~~~-~~~~~-~~~~~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~----------~~~ 129 (362)
T 3ffr_A 79 QNCV-EK-KSFHCV-NGSFS-KRFYEFAGELGREAYKEEAAFGKGF---------------YPADIT----------VPA 129 (362)
T ss_dssp HHHC-SS-EEEEEE-CSHHH-HHHHHHHHHTTCEEEEEECCTTCCC---------------CGGGCC----------CCT
T ss_pred Hhcc-CC-cEEEEc-CcHHH-HHHHHHHHHhCCCeEEEecCCCCCC---------------CHHHHh----------ccC
Confidence 9984 44 444444 43434 3445566778999999998765544 344443 257
Q ss_pred CceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC-CeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccC
Q 010538 201 AYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG-RWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGY 279 (508)
Q Consensus 201 ~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~-g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~ 279 (508)
+|++|++++++||||.++|+++|.++|++ + |+++|+|++|+.+..++++.+ +|++++|+||++++
T Consensus 130 ~~~~v~~~~~~nptG~~~~l~~i~~la~~------------~p~~~li~D~a~~~~~~~~~~~~--~d~~~~s~~K~~~~ 195 (362)
T 3ffr_A 130 DAEIICLTHNETSSGVSMPVEDINTFRDK------------NKDALIFVDAVSSLPYPKFDWTK--IDSVFFSVQKCFGL 195 (362)
T ss_dssp TCCEEEEESEETTTTEECCHHHHTTSGGG------------STTSEEEEECTTTTTSSCCCTTS--CSEEEEETTSTTCC
T ss_pred CccEEEEEcCCCCcceeCCHHHHHHHHHh------------CCCCEEEEecccccCCcccChhH--CcEEEEecccccCC
Confidence 89999999999999999999999998887 9 999999999999998888876 89999999999998
Q ss_pred CCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHH
Q 010538 280 PTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIA 359 (508)
Q Consensus 280 P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~ 359 (508)
|.|+|++++++++++.+.+...||+......+...+.. ........++++...++++.++++++.+.|++.+.+++.
T Consensus 196 ~~G~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~ 272 (362)
T 3ffr_A 196 PAGLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSMLE---KARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTE 272 (362)
T ss_dssp CSCCEEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHHHH---HHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CCceEEEEECHHHHHHhhhccccCCCCcccccHHHHHH---HhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 88999999999998888776655443222211111111 112233478899999999999999888778999999999
Q ss_pred HHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHH
Q 010538 360 SLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGAC 439 (508)
Q Consensus 360 ~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~ 439 (508)
++++++.+.|+++ ++++++.+... .....+++|.+++ + ..++.+.|.++||.+++|..|.
T Consensus 273 ~~~~~l~~~L~~~------~g~~~~~~~~~----~~~~~~~~~~~~~-~-----~~~~~~~l~~~gi~~~~g~~~~---- 332 (362)
T 3ffr_A 273 EKAALINTYIESS------KVFSFGVEDAK----LRSMTTIVANTTM-L-----PGEINKILEPFDMAVGAGYGSK---- 332 (362)
T ss_dssp HHHHHHHHHHHHC------SSEEESSSCGG----GBCSSEEEEEESS-C-----HHHHHHHHGGGTEEEEECSGGG----
T ss_pred HHHHHHHHHHHHc------cCceeccCChh----hcCCceEEEecCC-C-----HHHHHHHHHHCCeEEecCcccc----
Confidence 9999999999987 47888764321 1336788888876 2 3458888988899999875321
Q ss_pred HhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 440 AKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 440 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
.++++|+|++.++|.+|+++++++|+++.
T Consensus 333 -------------------------------~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 333 -------------------------------KETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp -------------------------------TTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred -------------------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 25789999999999999999999998764
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-35 Score=300.23 Aligned_cols=368 Identities=13% Similarity=0.021 Sum_probs=279.5
Q ss_pred chHHHHHHhhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCc
Q 010538 25 SIDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDY 104 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~ 104 (508)
+++.+|. +||.+....+|+++++.+++++.+++++.+ ... + .+ +.......+++++.+++++|++++ +
T Consensus 19 ~~~~~r~-~~~~~~~~~~~l~~~~~~~~~~~v~~a~~~-~~~----~---~~--~~~~~~~~~~~~~~la~~~g~~~~-~ 86 (393)
T 1vjo_A 19 INDNQRL-QLEPLEVPSRLLLGPGPSNAHPSVLQAMNV-SPV----G---HL--DPAFLALMDEIQSLLRYVWQTENP-L 86 (393)
T ss_dssp CCCTTCC-CCCSCCCCCCEECSSSCCCCCHHHHHHHSS-CCC----C---TT--SHHHHHHHHHHHHHHHHHHTCCCS-C
T ss_pred ecchhhh-cCCccCCccceeccCCCCCCCHHHHHHHhc-ccc----c---cc--CHHHHHHHHHHHHHHHHHhCCCCC-c
Confidence 5667888 999886668999999999999998877643 221 1 11 122457788999999999999754 2
Q ss_pred eEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchh
Q 010538 105 KCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPI 184 (508)
Q Consensus 105 ~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~ 184 (508)
+|++|+|+|+|+++++.++ .++|++|+++...|++. .+...++..|++++.+|.+.++.+ |++
T Consensus 87 ~v~~t~g~t~al~~~~~~~-~~~gd~Vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~---------------d~~ 149 (393)
T 1vjo_A 87 TIAVSGTGTAAMEATIANA-VEPGDVVLIGVAGYFGN-RLVDMAGRYGADVRTISKPWGEVF---------------SLE 149 (393)
T ss_dssp EEEESSCHHHHHHHHHHHH-CCTTCEEEEEESSHHHH-HHHHHHHHTTCEEEEEECCTTCCC---------------CHH
T ss_pred EEEEeCchHHHHHHHHHhc-cCCCCEEEEEcCChhHH-HHHHHHHHcCCceEEEecCCCCCC---------------CHH
Confidence 6999999999999999998 67889999998777762 244556667999999998765545 578
Q ss_pred hhhcCCCCCCCCCCCC-CceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCC
Q 010538 185 QRRKGASFPERDPAGD-AYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSK 263 (508)
Q Consensus 185 ~l~~~~~l~~~~~~~~-~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~ 263 (508)
+++ +++ ++ ++++|++++++||||.+.|+++|.++|++ +|+++|+|++|++|..++++..
T Consensus 150 ~l~--~~l------~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~li~Dea~~~g~~~~~~~~ 209 (393)
T 1vjo_A 150 ELR--TAL------ETHRPAILALVHAETSTGARQPLEGVGELCRE------------FGTLLLVDTVTSLGGVPIFLDA 209 (393)
T ss_dssp HHH--HHH------HHHCCSEEEEESEETTTTEECCCTTHHHHHHH------------HTCEEEEECTTTTTTSCCCTTT
T ss_pred HHH--HHH------hhCCceEEEEeccCCCcceeccHHHHHHHHHH------------cCCEEEEECCccccCcCCcccc
Confidence 887 444 23 67899999999999999999999999998 8999999999999998888888
Q ss_pred CCCcEEEEeccccccCCCcceEEEEechhHhhhccc---cccCceEEecccchhhhhhccCccccccCCCCChhHHHHHH
Q 010538 264 YPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNT---YFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIR 340 (508)
Q Consensus 264 ~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~ 340 (508)
.++|++++|+||++++|.|+|++++++++++.+... ..++.. .. .....|. ...++..|+++...++++.
T Consensus 210 ~~~di~~~s~sK~l~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~-----~~~~~~~g~~~~~~~~a~~ 282 (393)
T 1vjo_A 210 WGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYL-DM-NLLGKYW-----GSERVYHHTAPINLYYALR 282 (393)
T ss_dssp TTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTT-CH-HHHHHHH-----STTCCCCSCCCHHHHHHHH
T ss_pred cCccEEEEcCcccccCCCceEEEEECHHHHHHHhccCCCCCceec-Cc-Hhhhhhh-----ccCCCCCCCCCHHHHHHHH
Confidence 889999999999888787899999999987766321 111100 00 0000000 0123344588899899999
Q ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHH
Q 010538 341 HGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKL 420 (508)
Q Consensus 341 ~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 420 (508)
++++.+.+.+++++.+++.++++++.+.|+++ +++++.+.+. ..+++++|.++.. .+..++.+.
T Consensus 283 ~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~~-----~~~~~~~~~~~~~----~~~~~~~~~ 346 (393)
T 1vjo_A 283 EALRLIAQEGLANCWQRHQKNVEYLWERLEDI-------GLSLHVEKEY-----RLPTLTTVCIPDG----VDGKAVARR 346 (393)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-------TCCBSSCGGG-----BCSSEEEEECCTT----CCHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc-------CCcccCCccc-----cCCcEEEEEcCCC----CCHHHHHHH
Confidence 99998766688999999999999999999886 4666655321 1257888887532 234568888
Q ss_pred HhhC-CCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecC-CCCCHHHHHHHHHhhhhh
Q 010538 421 ASLS-GIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFG-YMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 421 L~~~-gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~-~~~t~eev~~l~~~~~~~ 498 (508)
|.++ ||.+++|..|. .++++|||++ +.++++++++++++|+++
T Consensus 347 l~~~~gi~v~~g~~~~-----------------------------------~~~~iRis~~~~~~~~~~i~~~~~~l~~~ 391 (393)
T 1vjo_A 347 LLNEHNIEVGGGLGEL-----------------------------------AGKVWRVGLMGFNSRKESVDQLIPALEQV 391 (393)
T ss_dssp HHHHHCEECEECCGGG-----------------------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHH
T ss_pred HHhhCCEEEecCcccc-----------------------------------CCCEEEEeCCccCChHHHHHHHHHHHHHH
Confidence 8877 99999886331 1578999964 456777899999999887
Q ss_pred h
Q 010538 499 V 499 (508)
Q Consensus 499 ~ 499 (508)
+
T Consensus 392 l 392 (393)
T 1vjo_A 392 L 392 (393)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=297.70 Aligned_cols=355 Identities=14% Similarity=0.088 Sum_probs=270.4
Q ss_pred eeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCC--CCceEEEcCChHHHHHHHHh
Q 010538 44 LDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASM--KDYKCIFTSGATAALKLVGE 121 (508)
Q Consensus 44 ld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~--~~~~i~~t~g~t~al~~~~~ 121 (508)
+-+.+..++++.+++++.+... . ..+.......+++++++++++|+++ + +|++|+|+|+|+. ++.
T Consensus 5 ~~~~gp~~~~~~v~~a~~~~~~------~----~~~~~~~~~~~~~~~~la~~~~~~~~~~--~v~~~~g~t~al~-~~~ 71 (384)
T 3zrp_A 5 LLHVGPTTIKEDVLVAGLENNV------G----FTSKEFVEALAYSLKGLRYVMGASKNYQ--PLIIPGGGTSAME-SVT 71 (384)
T ss_dssp -CCSSCSCCCHHHHHHTTCCSC------C----TTSHHHHHHHHHHHHHHHHHHTCCTTSE--EEEEESCHHHHHH-HGG
T ss_pred eccCCCCCCCHHHHHHhhcccc------c----cccHHHHHHHHHHHHHHHHHhCCCCCCc--EEEEcCCcHHHHH-HHH
Confidence 3345566678888777643221 0 1123346778899999999999987 6 8999999999999 888
Q ss_pred hcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCC
Q 010538 122 AFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDA 201 (508)
Q Consensus 122 ~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~ 201 (508)
++ .++|++|+++...|++. .+...++..|++++.+|.+.++.+ |+++++ +++. ..+
T Consensus 72 ~~-~~~gd~vi~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~--~~i~-----~~~ 127 (384)
T 3zrp_A 72 SL-LKPNDKILVVSNGVFGD-RWEQIFKRYPVNVKVLRPSPGDYV---------------KPGEVE--EEVR-----KSE 127 (384)
T ss_dssp GG-CCTTCEEEEECSSHHHH-HHHHHHTTSSCEEEEECCSTTCCC---------------CHHHHH--HHHH-----HSC
T ss_pred hh-cCCCCEEEEecCCcchH-HHHHHHHHcCCcEEEecCCCCCCC---------------CHHHHH--HHHH-----hCC
Confidence 88 78899999988777653 344556678999999999876655 678887 5542 126
Q ss_pred ceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCC
Q 010538 202 YNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPT 281 (508)
Q Consensus 202 t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~ 281 (508)
+++|++++++||||.++|+++|.++|++ +|+++|+|++|+.+..++++...++|++++|+||++++|.
T Consensus 128 ~~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~ 195 (384)
T 3zrp_A 128 YKLVALTHVETSTGVREPVKDVINKIRK------------YVELIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALGSAA 195 (384)
T ss_dssp EEEEEEESEETTTTEECCHHHHHHHHGG------------GEEEEEEECTTTTTTSCCCTTTTTCSEEEEETTSTTCCCS
T ss_pred CcEEEEeCCCCCCceECcHHHHHHHHHh------------cCCEEEEECcccccCccccccccCCCEEEecCcccccCCC
Confidence 8999999999999999999999999998 9999999999999999999988899999999999886688
Q ss_pred cceEEEEechhHhhh-ccccccCceEEecccchhhhhhccC-cc-ccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHH
Q 010538 282 GLGALIMRNDAAKLL-KNTYFSGGTVAASIADIDFVKRRQG-VE-ELFEDGTASFLSIASIRHGFNLINSLTVPAICRHI 358 (508)
Q Consensus 282 G~G~l~~~~~~~~~l-~~~~~g~~~~~~~~~~~~~~~~~~~-~~-~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~ 358 (508)
|+|+++++++.++.+ .+....+. ......+...... .. .....|+++...++++.++++++.+.+++++.+++
T Consensus 196 g~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~ 271 (384)
T 3zrp_A 196 GLGLLLLSPKALSILDSQNSIAGY----YLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRH 271 (384)
T ss_dssp SEEEEEECHHHHHHHHHCCCSCCS----TTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred ceEEEEECHHHHHHhcCCCCCCcc----cccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999999998777 43211100 0000011000000 00 22233689999999999999998888899999999
Q ss_pred HHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchH
Q 010538 359 ASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGA 438 (508)
Q Consensus 359 ~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~ 438 (508)
+++++++.+.|+++ +++++.+... ...+++++|.+++. +..++.+.|.++||.+++|..|.
T Consensus 272 ~~~~~~l~~~L~~~-------g~~~~~~~~~----~~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~g~~~~--- 332 (384)
T 3zrp_A 272 TMVASAIRAGLEAL-------GLEIVARRPE----SYSNTVTGVILKVA-----DPQKVLAGTVNEGVEFAPGVHPA--- 332 (384)
T ss_dssp HHHHHHHHHHHHHT-------TCCBSCSSGG----GBCSSEEEEECSSS-----CHHHHHHHHHTTTCCCEECCCTT---
T ss_pred HHHHHHHHHHHHHC-------CCeEccCccc----ccCccEEEEECCCC-----CHHHHHHHHHHCCEEEecCCCCC---
Confidence 99999999999987 4666655411 12367888988762 34568899998999999875321
Q ss_pred HHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhh
Q 010538 439 CAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 439 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~ 503 (508)
.+++|++++.++|.+|++++++.|+++++.++
T Consensus 333 ---------------------------------~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~ 364 (384)
T 3zrp_A 333 ---------------------------------FKYFRIGHMGWVTPNDAIIAISVIERTLRKLG 364 (384)
T ss_dssp ---------------------------------CCEEEEECCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred ---------------------------------cCEEEEeccccCCHHHHHHHHHHHHHHHHHcC
Confidence 16899999999999999999999999886543
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=293.69 Aligned_cols=347 Identities=14% Similarity=0.085 Sum_probs=265.4
Q ss_pred eeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC--CCCceEEEcCChHHHHHHHH
Q 010538 43 YLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS--MKDYKCIFTSGATAALKLVG 120 (508)
Q Consensus 43 yld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~--~~~~~i~~t~g~t~al~~~~ 120 (508)
++.+++.+++++.+++++.+.. . + + .+.......+++++++++++|++ ++ ++++|+|+|+|+.+++
T Consensus 2 ~~~~~gp~~~~~~v~~a~~~~~-~----~-~----~~~~~~~~~~~l~~~la~~~g~~~~~~--~v~~t~g~t~a~~~~~ 69 (353)
T 2yrr_A 2 LLLTPGPTPIPERVQKALLRPM-R----G-H----LDPEVLRVNRAIQERLAALFDPGEGAL--VAALAGSGSLGMEAGL 69 (353)
T ss_dssp EECSSSSCCCCHHHHGGGGSCC-C----C-T----TCHHHHHHHHHHHHHHHHHHCCCTTCE--EEEESSCHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHhccc-c----c-c----cCHHHHHHHHHHHHHHHHHhCCCCCCc--eEEEcCCcHHHHHHHH
Confidence 3445666777888877764322 1 1 1 12334567889999999999996 55 8999999999999999
Q ss_pred hhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCC
Q 010538 121 EAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGD 200 (508)
Q Consensus 121 ~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~ 200 (508)
.++. + ++|+++..+|+++ .+...++..|++++.+|.+.++.+ |+++++ +++ ++
T Consensus 70 ~~~~-~--d~vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~--~~l------~~ 122 (353)
T 2yrr_A 70 ANLD-R--GPVLVLVNGAFSQ-RVAEMAALHGLDPEVLDFPPGEPV---------------DPEAVA--RAL------KR 122 (353)
T ss_dssp HTCS-C--CCEEEEECSHHHH-HHHHHHHHTTCCEEEEECCTTSCC---------------CHHHHH--HHH------HH
T ss_pred HHhc-C--CcEEEEcCCCchH-HHHHHHHHcCCceEEEeCCCCCCC---------------CHHHHH--HHH------Hh
Confidence 9883 4 7888888888887 566667778999999998765555 577887 444 23
Q ss_pred -CceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccC
Q 010538 201 -AYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGY 279 (508)
Q Consensus 201 -~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~ 279 (508)
++++|++++++||||.++|+++|.++|++ +|+++|+|++|++|..++++..+++|++++|+||++++
T Consensus 123 ~~~~~v~~~~~~nptG~~~~~~~i~~l~~~------------~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~ 190 (353)
T 2yrr_A 123 RRYRMVALVHGETSTGVLNPAEAIGALAKE------------AGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSA 190 (353)
T ss_dssp SCCSEEEEESEETTTTEECCHHHHHHHHHH------------HTCEEEEECTTTTTTSCCCHHHHTCSEEECCTTSTTCC
T ss_pred CCCCEEEEEccCCCcceecCHHHHHHHHHH------------cCCeEEEEcCcccccccccccccCceEEEecCcccccC
Confidence 67999999999999999999999999998 89999999999988888777666789999999997665
Q ss_pred CCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHH
Q 010538 280 PTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIA 359 (508)
Q Consensus 280 P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~ 359 (508)
|.|+|+++++++.++.++. ..++.. ....+.. ........++++...++++.++++++.+.|++++.++++
T Consensus 191 ~~g~G~~~~~~~~~~~l~~-~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~ 261 (353)
T 2yrr_A 191 PPGLAPIAASLEARKAFTG-KRGWYL-----DLARVAE---HWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAR 261 (353)
T ss_dssp CSSCEEEEECHHHHHHCCC-CSCSTT-----CHHHHHH---HHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CCceEEEEECHHHHHHhcc-CCCccc-----cHHHHhh---hhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 8899999999998877652 111100 0000000 001234567889888899989999887778999999999
Q ss_pred HHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHH
Q 010538 360 SLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGAC 439 (508)
Q Consensus 360 ~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~ 439 (508)
++++++.+.|+++ +++++.+.. +.+.+++|.++.. .+..++.+.|.++||.+++|..|.
T Consensus 262 ~~~~~l~~~L~~~-------g~~~~~~~~------~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~v~~g~~~~---- 320 (353)
T 2yrr_A 262 EVYAWVLEELKAR-------GFRPYPKAS------PLPTVLVVRPPEG----VDADRLVRALYAEGVAVAGGIGPT---- 320 (353)
T ss_dssp HHHHHHHHHHHHT-------TCEESCSSS------BCTTEEEEECCTT----CCHHHHHHHHHHTTEECEECCGGG----
T ss_pred HHHHHHHHHHHHC-------CCccccCcc------CCCeEEEEECCCC----CCHHHHHHHHHHCCEEEeCCcccc----
Confidence 9999999999886 577776431 1267778888531 344568889988999999876321
Q ss_pred HhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHH-HHHHhhhhhhhh
Q 010538 440 AKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAK-VNRCSSFDFVNF 501 (508)
Q Consensus 440 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~-~l~~~~~~~~~~ 501 (508)
.++.+|+|++.++|.+|++ +++++|+++++.
T Consensus 321 -------------------------------~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 321 -------------------------------RGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp -------------------------------TTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred -------------------------------CCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 1578999999999999999 999999987753
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-34 Score=297.11 Aligned_cols=370 Identities=12% Similarity=0.055 Sum_probs=281.1
Q ss_pred hhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 33 EFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 33 ~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
.|+.+.+...++.+.+...+++.+++++.+... . ..........+++++++++++|++.++ .+++|+|+
T Consensus 5 ~~~~~~~~~~~~~~pgp~~~~~~v~~a~~~~~~----~------~~~~~~~~~~~~~~~~la~~~~~~~~~-~v~~~~sg 73 (411)
T 3nnk_A 5 QFSQLNPPSRLLMGPGPINADPRVLRAMSSQLI----G------QYDPAMTHYMNEVMALYRGVFRTENRW-TMLVDGTS 73 (411)
T ss_dssp SSCSCCCCCCEEESSSCCCCCHHHHHHHTSCCC----C------TTCHHHHHHHHHHHHHHHHHHTCCCSE-EEEEESCH
T ss_pred cccccCCccceeecCCCCCCCHHHHHHhhcccc----c------cccHHHHHHHHHHHHHHHHHhCCCCCc-EEEECCCc
Confidence 455555666788888888889988877643211 1 112234567889999999999998761 38899999
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCC
Q 010538 113 TAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASF 192 (508)
Q Consensus 113 t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l 192 (508)
|+|+++++.++ .++|++|+++...|++.. +...++..|.+++.+|.+.++.+ |+++++ +++
T Consensus 74 t~al~~~~~~~-~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~--~~i 134 (411)
T 3nnk_A 74 RAGIEAILVSA-IRPGDKVLVPVFGRFGHL-LCEIARRCRAEVHTIEVPWGEVF---------------TPDQVE--DAV 134 (411)
T ss_dssp HHHHHHHHHHH-CCTTCEEEEEECSHHHHH-HHHHHHHTTCEEEEEECCTTCCC---------------CHHHHH--HHH
T ss_pred HHHHHHHHHHh-cCCCCEEEEecCCchHHH-HHHHHHHcCCeEEEEecCCCCCC---------------CHHHHH--HHH
Confidence 99999999998 788999999987776532 44556678999999999766655 578887 554
Q ss_pred CCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEe
Q 010538 193 PERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMS 272 (508)
Q Consensus 193 ~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S 272 (508)
.+ +++++|++++++|+||.+.|+++|.++|++ +|+++|+|++|+.+..++++...++|++++|
T Consensus 135 ~~-----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s 197 (411)
T 3nnk_A 135 KR-----IRPRLLLTVQGDTSTTMLQPLAELGEICRR------------YDALFYTDATASLGGNPLETDVWGLDAVSAG 197 (411)
T ss_dssp HH-----HCCSEEEEESEETTTTEECCCTTHHHHHHH------------HTCEEEEECTTTBTTBCCCTTTTTCSEEECC
T ss_pred hh-----CCCeEEEEeCCCCCcceeccHHHHHHHHHH------------cCCEEEEECCcccCCcccchhccCCcEEEec
Confidence 21 278999999999999999999999999998 8999999999999999999998899999999
Q ss_pred ccccccCCCcceEEEEechhHhhhccc------cccCceEEe----cc-cc---hhhhhhccCccccccCCCCChhHHHH
Q 010538 273 FYKIFGYPTGLGALIMRNDAAKLLKNT------YFSGGTVAA----SI-AD---IDFVKRRQGVEELFEDGTASFLSIAS 338 (508)
Q Consensus 273 ~~K~~g~P~G~G~l~~~~~~~~~l~~~------~~g~~~~~~----~~-~~---~~~~~~~~~~~~~~~~gt~~~~~~~~ 338 (508)
+||++++|.|+|+++++++.++.+.+. +.|++.... .. .. ..+... ....++..++++...+++
T Consensus 198 ~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a 275 (411)
T 3nnk_A 198 MQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDY--WGPERLNHHTEATTALFG 275 (411)
T ss_dssp STTTTCCCSSEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHH--HSTTCCCCSCCCHHHHHH
T ss_pred CccccCCCCceEEEEECHHHHHHHhhcccccccccccccccccCCCCcccccchHHHHhh--hccccCCCCCCCHHHHHH
Confidence 999755588999999999988766543 222221000 00 00 000000 013456778999999999
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHH
Q 010538 339 IRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVE 418 (508)
Q Consensus 339 l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~ 418 (508)
+.++++.+.+.|++++.+++.++++++.+.|+++ +++++.+... ..+++++|.+++. .+..++.
T Consensus 276 ~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~~-----~~~~~~~~~~~~~----~~~~~l~ 339 (411)
T 3nnk_A 276 ARECARLILQEGLDYGIARHKLHGDALVKGIQAM-------GLETFGDLKH-----KMNNVLGVVIPQG----INGDQAR 339 (411)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-------TCCBCSCGGG-----BCSSEEEEECCTT----CCHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-------CCEeCCCccc-----ccccEEEEECCCC----CCHHHHH
Confidence 9999998888889999999999999999999986 5766655432 2378899988632 2345678
Q ss_pred HHHhhC-CCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEec-CCCCCHHHHHHHHHhhh
Q 010538 419 KLASLS-GIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSF-GYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 419 ~~L~~~-gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~-~~~~t~eev~~l~~~~~ 496 (508)
+.|.++ ||.+++|.. + ..++++|+++ ++.+|++|++++++.|+
T Consensus 340 ~~l~~~~gi~v~~g~~---~--------------------------------~~~~~iRi~~~~~~~~~~~i~~~~~~l~ 384 (411)
T 3nnk_A 340 KLMLEDFGIEIGTSFG---P--------------------------------LHGKVWRIGTMGYNARKDCVMTTLSALE 384 (411)
T ss_dssp HHHHHHHSEEEEECCG---G--------------------------------GTTTEEEEECCGGGCSHHHHHHHHHHHH
T ss_pred HHHHHhcCeEEeCccC---C--------------------------------CCCCEEEEeCccCcCCHHHHHHHHHHHH
Confidence 877665 999998731 1 1257999998 66679999999999999
Q ss_pred hhhhhh
Q 010538 497 DFVNFS 502 (508)
Q Consensus 497 ~~~~~~ 502 (508)
++++.+
T Consensus 385 ~~l~~~ 390 (411)
T 3nnk_A 385 AVLNYL 390 (411)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 987654
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=286.40 Aligned_cols=348 Identities=15% Similarity=0.123 Sum_probs=252.4
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCC---ccchhhhhhHHHHHHHHHHHHHcCCCCCCce-EEEcCChHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHS---QSDISLATCDIVRAAREQVLDYFNASMKDYK-CIFTSGATA 114 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~-i~~t~g~t~ 114 (508)
.+.+|+++++.+++|+.+++++.+.+ .++.+++.+ ....+....+..+++++.+++++|++++ ++ +++|+|+|+
T Consensus 2 ~~~~~l~~~~~~~~~~~v~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~~~i~~t~g~t~ 79 (362)
T 2c0r_A 2 SERAYNFNAGPAALPLEVLERAQAEF-VDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTG-YKVLFIQGGAST 79 (362)
T ss_dssp CCCCEECCSSSCCCCHHHHHHHHHTS-SSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSS-EEEEEESSHHHH
T ss_pred CcceeeccCCCCCCCHHHHHHHHHHH-hhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCC-cEEEEECCCchH
Confidence 35789999999999999999886644 232222111 1112334567788999999999999763 14 578899999
Q ss_pred HHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC---ccCccccccccccccccccchhhhhcCCC
Q 010538 115 ALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE---AVDNDGLSESLVTSTKISLLPIQRRKGAS 191 (508)
Q Consensus 115 al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~---~~~~~~l~~~~~~~~~~~~d~~~l~~~~~ 191 (508)
|+++++.++ .++|++|++....|.+. .+...++..| +++.++.+. .+... |.++++
T Consensus 80 a~~~~~~~l-~~~gd~vl~~~~~~~~~-~~~~~~~~~g-~~~~v~~~~~~~~~~~~--------------~~~~~~---- 138 (362)
T 2c0r_A 80 QFAMIPMNF-LKEGQTANYVMTGSWAS-KALKEAKLIG-DTHVAASSEASNYMTLP--------------KLQEIQ---- 138 (362)
T ss_dssp HHHHHHHHH-CCTTCEEEEEECSHHHH-HHHHHHHHHS-CEEEEEECGGGTTCSCC--------------CGGGCC----
T ss_pred HHHHHHHhc-CCCCCeEEEEecCcHhH-HHHHHHHHhC-CeEEEecccccccccCC--------------CHHHcc----
Confidence 999999998 57888888765443332 2345556678 999998762 11110 122211
Q ss_pred CCCCCCCCCCceEEEEeCCCCCCccc-cCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEE
Q 010538 192 FPERDPAGDAYNLFAFPSECNFSGSR-FNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVV 270 (508)
Q Consensus 192 l~~~~~~~~~t~lv~~~~~~n~tG~~-~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~ 270 (508)
++++|++|++++++|+||.+ .|+++| +|+++++|++|+.|..++++.+. |+++
T Consensus 139 ------i~~~t~~v~~~~~~n~tG~~~~~l~~i------------------~~~~vivD~a~~~~~~~~~~~~~--d~~~ 192 (362)
T 2c0r_A 139 ------LQDNAAYLHLTSNETIEGAQFKAFPDT------------------GSVPLIGDMSSDILSRPFDLNQF--GLVY 192 (362)
T ss_dssp ------CCTTEEEEEEESEETTTTEECSSCCCC------------------TTSCEEEECTTTTTSSCCCGGGC--SEEE
T ss_pred ------cCCCcCEEEEeCCcCccceeccccccc------------------CCCEEEEEChhhccCCccchhHC--cEEE
Confidence 25689999999999999997 455443 49999999999999998887654 9999
Q ss_pred EeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhc-
Q 010538 271 MSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSL- 349 (508)
Q Consensus 271 ~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~- 349 (508)
+|+||++| |.|+|++++++++++.+.+..... .++... .......+|++...++++.++++++.+.
T Consensus 193 ~s~~K~~g-~~G~G~l~~~~~~~~~l~~~~~~~---------~~~~~~---~~~~~~~~t~~~~~~~a~~~al~~~~~~~ 259 (362)
T 2c0r_A 193 AGAQKNLG-PSGVTVVIVREDLVAESPKHLPTM---------LRYDTY---VKNNSLYNTPPSFGIYMVNEVLKWIEERG 259 (362)
T ss_dssp EETTTTTC-CSSCEEEEEEGGGSSSCCTTSCGG---------GCHHHH---HHTTTCSSCCCHHHHHHHHHHHHHHHHTT
T ss_pred Eecccccc-CcCcEEEEEcHHHHhhccccCchH---------HhHHHH---hhccCcCCCchHHHHHHHHHHHHHHHHhC
Confidence 99999998 989999999999876665421100 000000 0122345789999999999999988776
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcccCCCCCceE-EEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCee
Q 010538 350 TVPAICRHIASLGMYVRKVLLSLRHENGADVC-TIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQL 428 (508)
Q Consensus 350 g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v 428 (508)
+++.+.++++++++++.+.|+++. ++ ++..++.. +..++++|.+++. .+..++.+.|.++||.+
T Consensus 260 ~~~~~~~~~~~~~~~l~~~L~~~~------~~~~~~~~~~~-----~~~~~~~~~~~~~----~~~~~~~~~L~~~gi~~ 324 (362)
T 2c0r_A 260 GLEGVQQANRKKASLIYDAIDQSG------GFYRGCVDVDS-----RSDMNITFRLASE----ELEKEFVKASEQEGFVG 324 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTST------TSSEESSCGGG-----BCSSEEEEECSCH----HHHHHHHHHHHHTTEES
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcC------CccccCCChHH-----cCCcEEEEEcCCc----chHHHHHHHHHHCCCee
Confidence 689999999999999999999872 25 66543221 2367888887531 23346888999999988
Q ss_pred ccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 429 RTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 429 ~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
.+|..+ .+.+|||++.++|.+|++++++.|+++++
T Consensus 325 ~~g~~~-------------------------------------~~~iRis~~~~~~~e~i~~l~~~l~~~~~ 359 (362)
T 2c0r_A 325 LKGHRS-------------------------------------VGGLRASIYNAVPYESCEALVQFMEHFKR 359 (362)
T ss_dssp CBCCTT-------------------------------------TCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred ccCCCC-------------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 776422 35699999999999999999999998765
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=291.16 Aligned_cols=368 Identities=11% Similarity=0.031 Sum_probs=275.0
Q ss_pred hhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 33 EFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 33 ~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
.||.+.++.+|+.+.+..++++.+++++.+.. . + .+ ........+++++.+++++|++++. +|++|+|+
T Consensus 10 ~~~~~~~~~~~~~~~~p~~~~~~v~~a~~~~~-~----~---~~--~~~~~~~~~~l~~~la~~~~~~~~~-~v~~~~g~ 78 (396)
T 2ch1_A 10 LRNPLIIPEKIMMGPGPSNCSKRVLTAMTNTV-L----S---NF--HAELFRTMDEVKDGLRYIFQTENRA-TMCVSGSA 78 (396)
T ss_dssp GSSCCCCCCCBCCSSSSCCCCHHHHHHTTSCC-C----C---TT--CHHHHHHHHHHHHHHHHHHTCCCSC-EEEESSCH
T ss_pred cCCCCCCCcceeecCCCCCCCHHHHHHhcccc-c----c---CC--ChhHHHHHHHHHHHHHHHhCCCCCc-EEEECCcH
Confidence 68888777888888888888888877653321 1 1 11 1223356788999999999997652 69999999
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCC
Q 010538 113 TAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASF 192 (508)
Q Consensus 113 t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l 192 (508)
|+|+.+++.++ .++|++|+++...|+++. +...++..|++++.+|.+.++.+ |+++++ +++
T Consensus 79 t~al~~~~~~~-~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~--~~l 139 (396)
T 2ch1_A 79 HAGMEAMLSNL-LEEGDRVLIAVNGIWAER-AVEMSERYGADVRTIEGPPDRPF---------------SLETLA--RAI 139 (396)
T ss_dssp HHHHHHHHHHH-CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTSCC---------------CHHHHH--HHH
T ss_pred HHHHHHHHHHh-cCCCCeEEEEcCCcccHH-HHHHHHHcCCceEEecCCCCCCC---------------CHHHHH--HHH
Confidence 99999999998 678999999998898863 44556778999999998765445 678887 444
Q ss_pred CCCCCCCC-CceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEE
Q 010538 193 PERDPAGD-AYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVM 271 (508)
Q Consensus 193 ~~~~~~~~-~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~ 271 (508)
++ ++++|++++++||||.++|+++|.++|++ +|+++|+|++|++|..++++..+++|+++.
T Consensus 140 ------~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~------------~~~~li~Dea~~~g~~~~~~~~~~~d~~~~ 201 (396)
T 2ch1_A 140 ------ELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQ------------HDCLLIVDAVASLCGVPFYMDKWEIDAVYT 201 (396)
T ss_dssp ------HHHCCSEEEEESEETTTTEECCCTTHHHHHHH------------TTCEEEEECTTTBTTBCCCTTTTTCCEEEC
T ss_pred ------HhCCCCEEEEECCCCCCceecCHHHHHHHHHH------------cCCEEEEEccccccCCccchhhcCcCEEEE
Confidence 23 67999999999999999999999999998 899999999999999999888888999999
Q ss_pred eccccccCCCcceEEEEechhHhhhcccc--ccCceEEecccchhhhhhc-cCccccccCCCCChhHHHHHHHHHHHHHh
Q 010538 272 SFYKIFGYPTGLGALIMRNDAAKLLKNTY--FSGGTVAASIADIDFVKRR-QGVEELFEDGTASFLSIASIRHGFNLINS 348 (508)
Q Consensus 272 S~~K~~g~P~G~G~l~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~~~~-~~~~~~~~~gt~~~~~~~~l~~al~~~~~ 348 (508)
|+||++++|.|+|+++++++.++.+...- .+.. ..+...+.... .....++..++++...++++.++++.+.+
T Consensus 202 s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~ 277 (396)
T 2ch1_A 202 GAQKVLGAPPGITPISISPKALDVIRNRRTKSKVF----YWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAE 277 (396)
T ss_dssp CCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCG----GGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred cCCccccCCCCeEEEEECHHHHHhhhhccCcccce----EechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 99997776889999999998877664320 0000 00000000000 01123456688898888888889998766
Q ss_pred cChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhh-CCCe
Q 010538 349 LTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASL-SGIQ 427 (508)
Q Consensus 349 ~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~-~gI~ 427 (508)
.+++++.++++++++++.+.|+++ +++++.+... ...+.+++|.++.. .+..++.+.|.+ +||.
T Consensus 278 ~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~L~~~~gi~ 342 (396)
T 2ch1_A 278 EGLENQIKRRIECAQILYEGLGKM-------GLDIFVKDPR----HRLPTVTGIMIPKG----VDWWKVSQYAMNNFSLE 342 (396)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHH-------TCCBSSCSGG----GBCTTEEEEECCTT----CCHHHHHHHHHHHHCBC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHC-------CCeeccCCcc----ccCCceEEEEcCCC----CCHHHHHHHHHHhCCEE
Confidence 689999999999999999999886 4666655421 01245888888531 234567777765 5999
Q ss_pred eccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecC-CCCCHHHHHHHHHhhhhhhhhh
Q 010538 428 LRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFG-YMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 428 v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~-~~~t~eev~~l~~~~~~~~~~~ 502 (508)
+++|..|. .++++||+++ +.+|.+|+++++++|+++++-+
T Consensus 343 v~~g~~~~-----------------------------------~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~ 383 (396)
T 2ch1_A 343 VQGGLGPT-----------------------------------FGKAWRVGIMGECSTVQKIQFYLYGFKESLKAT 383 (396)
T ss_dssp CBCCCGGG-----------------------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHH
T ss_pred EecCcccc-----------------------------------CCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHh
Confidence 98875221 2578999995 5568999999999999887644
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=293.41 Aligned_cols=330 Identities=11% Similarity=0.061 Sum_probs=258.7
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCceEE-EcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEcc
Q 010538 82 TCDIVRAAREQVLDYFNASMKDYKCI-FTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDV 160 (508)
Q Consensus 82 ~~~~~~~~r~~la~~~~~~~~~~~i~-~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~ 160 (508)
..+..+++++++++++|++++ .++ +++|+|+|+.+++.++ .++|++|+++...|++.. +...++..|++++.+|.
T Consensus 42 ~~~~~~~l~~~la~~~g~~~~--~~~~~~~s~t~al~~~~~~l-~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~ 117 (416)
T 3isl_A 42 FTGIMNETMEMLRELFQTKNR--WAYPIDGTSRAGIEAVLASV-IEPEDDVLIPIYGRFGYL-LTEIAERYGANVHMLEC 117 (416)
T ss_dssp HHHHHHHHHHHHHHHTTCCCS--EEEEEESCHHHHHHHHHHHH-CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCCCCC--cEEEecCcHHHHHHHHHHHh-cCCCCEEEEecCCcccHH-HHHHHHhcCCeeEEEec
Confidence 467788999999999999877 665 8899999999999998 788999999988777632 45566778999999999
Q ss_pred CCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCC
Q 010538 161 EEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFS 240 (508)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~ 240 (508)
+.++.+ |+++++ +++. .+++++|++++++||||.+.|+++|.++|++
T Consensus 118 ~~~~~~---------------d~~~l~--~~i~-----~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~----------- 164 (416)
T 3isl_A 118 EWGTVF---------------DPEDII--REIK-----KVKPKIVAMVHGETSTGRIHPLKAIGEACRT----------- 164 (416)
T ss_dssp CTTCCC---------------CHHHHH--HHHH-----HHCCSEEEEESEETTTTEECCCHHHHHHHHH-----------
T ss_pred CCCCCC---------------CHHHHH--HHHh-----hCCCcEEEEEccCCCCceecCHHHHHHHHHH-----------
Confidence 876655 678887 5442 1468999999999999999999999999998
Q ss_pred CCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhcccc---ccCceE-----------
Q 010538 241 KGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTY---FSGGTV----------- 306 (508)
Q Consensus 241 ~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~---~g~~~~----------- 306 (508)
+|+++|+|++|+.|..++++...++|++++|+||++++|.|+|+++++++.++.+.+.. .||...
T Consensus 165 -~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~ 243 (416)
T 3isl_A 165 -EDALFIVDAVATIGGCEVKVDEWKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAALSGNRP 243 (416)
T ss_dssp -TTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHTC------------------CCC
T ss_pred -cCCEEEEECCccccCCCcchhhcCCCEEEecCccccCCCCCeEEEEECHHHHHHhhccccccccccccccchhccCCCC
Confidence 99999999999999999999988999999999997555889999999999988776532 222110
Q ss_pred -E-ecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEe
Q 010538 307 -A-ASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIY 384 (508)
Q Consensus 307 -~-~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~ 384 (508)
. .......+.. .....++..++++...++++.++++.+.+.|++++.+++.++++++.+.|++. +++++
T Consensus 244 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-------g~~~~ 314 (416)
T 3isl_A 244 ITSNYFDLSQLED--YWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAM-------GLRLF 314 (416)
T ss_dssp CSCSTTCHHHHHH--HTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-------TCCBC
T ss_pred CCccccchHHHHh--hhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-------CCEec
Confidence 0 0000011110 01245667889999999999999999888889999999999999999999985 57777
Q ss_pred cCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhC-CCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCC
Q 010538 385 GTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLS-GIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDD 463 (508)
Q Consensus 385 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~-gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 463 (508)
.+... ..+++++|.+++. .+..++.+.|.++ ||.+++|...
T Consensus 315 ~~~~~-----~~~~~~~~~~~~~----~~~~~l~~~L~~~~gi~v~~g~~~----------------------------- 356 (416)
T 3isl_A 315 GDDSC-----KMPVVTCVEIPGG----IDGESVRDMLLAQFGIEIASSFGP----------------------------- 356 (416)
T ss_dssp SCGGG-----BCTTEEEEECCTT----CCHHHHHHHHHHHHCEECBCCCST-----------------------------
T ss_pred cCccc-----cCCcEEEEeCCCC----CCHHHHHHHHHHhCCEEEecCCCC-----------------------------
Confidence 65432 2368888988632 2345688888766 9999987521
Q ss_pred ccccCCCCCceEEEecCCCCCHHH-HHHHHHhhhhhhhhh
Q 010538 464 NDIIHGKPTGAIRVSFGYMSTFED-AKVNRCSSFDFVNFS 502 (508)
Q Consensus 464 ~~~~~~~~~~~iRis~~~~~t~ee-v~~l~~~~~~~~~~~ 502 (508)
..++++|++++.++|.+| ++++++.|+++++.+
T Consensus 357 ------~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~ 390 (416)
T 3isl_A 357 ------LAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRH 390 (416)
T ss_dssp ------TTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred ------CCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHc
Confidence 126789999988888877 999999999987653
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-33 Score=284.57 Aligned_cols=352 Identities=11% Similarity=0.052 Sum_probs=260.8
Q ss_pred CeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHH
Q 010538 41 TVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVG 120 (508)
Q Consensus 41 ~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~ 120 (508)
..|+-+.+..++++.+++++.+... .+ .+.......+++++++++++|++.+...+++|+|+|+|+++++
T Consensus 19 ~~~~~~pgp~~~~~~v~~a~~~~~~------~~----~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~ 88 (376)
T 3f0h_A 19 GMLNFTVGPVMSSEEVRAIGAEQVP------YF----RTTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVV 88 (376)
T ss_dssp SCEECSSSSCCCCHHHHHHHTSCCC------CC----SSHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHH
T ss_pred CceeecCCCCCCcHHHHHHhcCCCC------CC----CCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHH
Confidence 3344456667779888887644221 11 1223456788999999999999753213455899999999999
Q ss_pred hhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCC
Q 010538 121 EAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGD 200 (508)
Q Consensus 121 ~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~ 200 (508)
.++ .++|++|++....+.+. .+...+...|++++.++.+....+ |+++++ +++ ++
T Consensus 89 ~~~-~~~gd~vi~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~--~~~------~~ 143 (376)
T 3f0h_A 89 MNC-FTKKDKVLVIDGGSFGH-RFVQLCEIHEIPYVALKLEHGKKL---------------TKEKLY--EYD------NQ 143 (376)
T ss_dssp HHH-CCTTCCEEEEESSHHHH-HHHHHHHHTTCCEEEEECCTTCCC---------------CHHHHH--TTT------TS
T ss_pred Hhc-cCCCCeEEEEeCChhhH-HHHHHHHHcCCceEEEeCCCCCCC---------------CHHHHH--Hhh------cc
Confidence 998 67888888886544442 344556678999999998765555 688898 543 56
Q ss_pred CceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCC
Q 010538 201 AYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYP 280 (508)
Q Consensus 201 ~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P 280 (508)
++++|++++++|+||.++|+++|.++|++ +|+++|+|++|+.+..++++..+++|++++|+||++++|
T Consensus 144 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~~ 211 (376)
T 3f0h_A 144 NFTGLLVNVDETSTAVLYDTMMIGEFCKK------------NNMFFVCDCVSAFLADPFNMNECGADVMITGSQKVLACP 211 (376)
T ss_dssp CCCEEEEESEETTTTEECCHHHHHHHHHH------------TTCEEEEECTTTTTTSCCCHHHHTCSEEEEETTTTTCCC
T ss_pred CceEEEEecccCCcceecCHHHHHHHHHH------------cCCEEEEEcCccccCccccccccCccEEEecCcccccCC
Confidence 88999999999999999999999999998 999999999999999888887778999999999999878
Q ss_pred CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhc-ChHHHHHHHH
Q 010538 281 TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSL-TVPAICRHIA 359 (508)
Q Consensus 281 ~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~i~~~~~ 359 (508)
.|+|+++++++.++.+.+...++.. .....+.. .........+++...++++.++++++.+. +++.+.++..
T Consensus 212 ~G~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~ 284 (376)
T 3f0h_A 212 PGISVIVLAPRGVERVEKSKVRTMY----FDLKDALK---NQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIA 284 (376)
T ss_dssp SSCEEEEECHHHHHHHHTCCCCCST----TCHHHHHH---HHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred CceEEEEECHHHHHHhhcCCCCcee----ecHHHHHh---hcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 8999999999988777653221100 00000000 00112224466666678888999988887 6899999999
Q ss_pred HHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhC-CCeeccCCCCCchH
Q 010538 360 SLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLS-GIQLRTGCFCNPGA 438 (508)
Q Consensus 360 ~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~-gI~v~~g~~~~~~~ 438 (508)
++++++.+.|+++ ++++..+.. ...++.+...+ .+..++.+.|.++ ||.+++|.. .
T Consensus 285 ~~~~~l~~~L~~~-------~~~~~~~~~-------~~~~~~~~~~~-----~~~~~l~~~l~~~~gi~v~~g~~---~- 341 (376)
T 3f0h_A 285 SQAADFRAKIKDL-------PFELVSESP-------ANGVTSVHPTT-----ANAYDIFLKLKDEYGIWICPNGG---E- 341 (376)
T ss_dssp HHHHHHHHHTTTS-------SEEECCSSB-------BTTEEEEEESS-----SCHHHHHHHHHHHSSEECEECCG---G-
T ss_pred HHHHHHHHHHHHc-------CCccCcccc-------CceEEEEeCCC-----CCHHHHHHHHHHhCCEEEecCcc---c-
Confidence 9999999999887 577765432 14555555433 2345688888877 999998721 1
Q ss_pred HHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 439 CAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 439 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
..++++|+|++.++|.+|+++++++|+++++
T Consensus 342 -------------------------------~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~ 372 (376)
T 3f0h_A 342 -------------------------------MKDTIFRVGHIGALTHEDNTTLVNAFKDLQK 372 (376)
T ss_dssp -------------------------------GTTTCEEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred -------------------------------cCCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 1257899999999999999999999998775
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-33 Score=287.37 Aligned_cols=371 Identities=12% Similarity=0.082 Sum_probs=276.2
Q ss_pred HHHHhhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEE
Q 010538 29 IRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIF 108 (508)
Q Consensus 29 ~r~~~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~ 108 (508)
++. .++. +..++.+.+...+++.+++++.+... + + ..........+++++++++++.+..+ +|++
T Consensus 15 ~~~-~~~~---~~~~~~~p~p~~~~~~v~~a~~~~~~-----~-~----~~~~~~~~~~~l~~~la~~~~~~~~~-~v~~ 79 (393)
T 3kgw_A 15 LSK-PLSV---PTRLLLGPGPSNLAPRVLAAGSLRMI-----G-H----MQKEMLQIMEEIKQGIQYVFQTRNPL-TLVV 79 (393)
T ss_dssp GGS-CCCC---CCCEECSSSCCCCCHHHHHHTTCCCC-----C-T----TSHHHHHHHHHHHHHHHHHHTCCCSE-EEEE
T ss_pred hcc-CCCC---ccceeccCCCCCCCHHHHHHhccccc-----C-c----ccHHHHHHHHHHHHHHHHHhCCCCCc-EEEE
Confidence 444 5553 34477777777788888877633211 1 1 11223567788999999999997651 5999
Q ss_pred cCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhc
Q 010538 109 TSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRK 188 (508)
Q Consensus 109 t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~ 188 (508)
|+|+++|+.+++.++ .++|++|+++...|.+. .+...++..|.+++.+|.+.++.+ |+++++
T Consensus 80 ~~gg~~al~~~~~~~-~~~gd~vl~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~---------------d~~~l~- 141 (393)
T 3kgw_A 80 SGSGHCAMETALFNL-LEPGDSFLTGTNGIWGM-RAAEIADRIGARVHQMIKKPGEHY---------------TLQEVE- 141 (393)
T ss_dssp SCCTTTHHHHHHHHH-CCTTCEEEEEESSHHHH-HHHHHHHHTTCEEEEEECCTTCCC---------------CHHHHH-
T ss_pred eCCcHHHHHHHHHhc-CCCCCEEEEEeCCchhH-HHHHHHHHcCCceEEEeCCCCCCC---------------CHHHHH-
Confidence 999999999999998 78899999886555322 245566778999999998766555 678888
Q ss_pred CCCCCCCCCCCC-CceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCc
Q 010538 189 GASFPERDPAGD-AYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVD 267 (508)
Q Consensus 189 ~~~l~~~~~~~~-~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D 267 (508)
+++ .+ ++++|++++++||||.++|+++|.++|++ +|+++|+|++|+.|..++++...++|
T Consensus 142 -~~i------~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~li~De~~~~g~~~~~~~~~~~d 202 (393)
T 3kgw_A 142 -EGL------AQHKPVLLFLVHGESSTGVVQPLDGFGELCHR------------YQCLLLVDSVASLGGVPIYMDQQGID 202 (393)
T ss_dssp -HHH------HHHCCSEEEEESEETTTTEECCCTTHHHHHHH------------TTCEEEEECTTTTTTSCCCTTTTTCC
T ss_pred -HHH------hhCCCcEEEEeccCCcchhhccHHHHHHHHHH------------cCCEEEEECCccccCcccchhhcCCC
Confidence 554 33 78999999999999999999999999998 99999999999999999998888999
Q ss_pred EEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhc-cCccccccCCCCChhHHHHHHHHHHHH
Q 010538 268 FVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRR-QGVEELFEDGTASFLSIASIRHGFNLI 346 (508)
Q Consensus 268 ~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~gt~~~~~~~~l~~al~~~ 346 (508)
++++|+||++++|.|+|+++++++.++.+.+...++.. +..+...+.... .....++..++++...++++.++++++
T Consensus 203 ~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~ 280 (393)
T 3kgw_A 203 IMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVS--FYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALI 280 (393)
T ss_dssp EEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSC--STTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHH
T ss_pred EEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCc--eeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999776588999999999998877654322211 000000000000 012335667899999999999999988
Q ss_pred HhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhC-C
Q 010538 347 NSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLS-G 425 (508)
Q Consensus 347 ~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~-g 425 (508)
.+.+++++.+++.++++++.+.|+++ +++++.+... ...+.+++|.+++. .+..++.+.|.++ |
T Consensus 281 ~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~l~~~~g 345 (393)
T 3kgw_A 281 AEQGLENCWRRHREATAHLHKHLQEM-------GLKFFVKDPE----IRLPTITTVTVPAG----YNWRDIVSYVLDHFS 345 (393)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHT-------TCCBSSSSGG----GBCSSEEEEECCTT----BCHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHc-------CCeeccCChh----hcCCeEEEEeCCCC----CCHHHHHHHHHHhCC
Confidence 88889999999999999999999987 4666543321 12356777887542 3445688888776 9
Q ss_pred CeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEec-CCCCCHHHHHHHHHhhhhhhhhhh
Q 010538 426 IQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSF-GYMSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 426 I~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~-~~~~t~eev~~l~~~~~~~~~~~~ 503 (508)
|.+++|..+. .++++|+++ ++.+|.+|++++++.|+++++.++
T Consensus 346 i~v~~g~~~~-----------------------------------~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~ 389 (393)
T 3kgw_A 346 IEISGGLGPT-----------------------------------EERVLRIGLLGYNATTENVDRVAEALREALQHCP 389 (393)
T ss_dssp EECBCCCGGG-----------------------------------TTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSC
T ss_pred EEEeCCcccC-----------------------------------CCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhh
Confidence 9999875321 257899999 555699999999999999887654
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=287.35 Aligned_cols=352 Identities=14% Similarity=0.057 Sum_probs=259.6
Q ss_pred CCCeeeeC-CCCCCCCHHHHHHHHHHhhccccCCCCC-ccchhhhhhHHHHHHHHH-HHHHcCCCCCCceEEEcCChHHH
Q 010538 39 NGTVYLDH-AGATLYSELQMEAIFRDFTTNVYGNPHS-QSDISLATCDIVRAAREQ-VLDYFNASMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~-la~~~~~~~~~~~i~~t~g~t~a 115 (508)
++.+|||+ .+.+++++.+.+++.+.. ......... .+..++......++++++ +++++|.+ +|++|+|+|+|
T Consensus 7 ~~~i~ld~~~~~~~~~~~v~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~----~v~~~~g~t~a 81 (371)
T 2e7j_A 7 KDFINIDPLQTGGKLTEEARQALLEWG-DGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD----VARVTNGAREA 81 (371)
T ss_dssp -CCEECCHHHHTCCCCHHHHHHHHHC---------------------CCHHHHHHTHHHHHTTSS----EEEEESSHHHH
T ss_pred CCcEEecccccCCCCCHHHHHHHHHHH-hhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC----EEEEeCChHHH
Confidence 67999999 557788888888875533 221100000 111222234557889999 99999987 59999999999
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEc--cCCccCccccccccccccccccchhhhhcCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAID--VEEAVDNDGLSESLVTSTKISLLPIQRRKGASFP 193 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~--~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~ 193 (508)
+.+++.++ .++|++|+++...|+++... ++..|++++.+| .+.+..+ |+++++ ++++
T Consensus 82 ~~~~~~~~-~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~---------------d~~~l~--~~l~ 140 (371)
T 2e7j_A 82 KFAVMHSL-AKKDAWVVMDENCHYSSYVA---AERAGLNIALVPKTDYPDYAI---------------TPENFA--QTIE 140 (371)
T ss_dssp HHHHHHHH-CCTTCEEEEETTCCHHHHHH---HHHTTCEEEEECCCCTTTCCC---------------CHHHHH--HHHH
T ss_pred HHHHHHHH-hCCCCEEEEccCcchHHHHH---HHHcCCeEEEeecccCCCCCc---------------CHHHHH--HHHH
Confidence 99999998 68899999999888877655 455799999999 7655444 577777 5542
Q ss_pred CCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEec
Q 010538 194 ERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSF 273 (508)
Q Consensus 194 ~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~ 273 (508)
+... .+++++|++++++||||.++|+++|.++|++ +|+++|+|++|+.+..++++..+++|++++|+
T Consensus 141 ~~~~-~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~------------~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~ 207 (371)
T 2e7j_A 141 ETKK-RGEVVLALITYPDGNYGNLPDVKKIAKVCSE------------YDVPLLVNGAYAIGRMPVSLKEIGADFIVGSG 207 (371)
T ss_dssp HHTT-TSCEEEEEEESSCTTTCCCCCHHHHHHHHHT------------TTCCEEEECTTTBTTBCCCHHHHTCSEEEEEH
T ss_pred hhcc-cCCeEEEEEECCCCCCcccCCHHHHHHHHHH------------cCCeEEEECccccCCCCCChhhcCCCEEEecC
Confidence 1100 1578999999999999999999999999998 99999999999999888777767899999999
Q ss_pred cccccCCCcceEEEEechhHhh-hccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChH
Q 010538 274 YKIFGYPTGLGALIMRNDAAKL-LKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVP 352 (508)
Q Consensus 274 ~K~~g~P~G~G~l~~~~~~~~~-l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~ 352 (508)
||++++|.|+|+++++++.++. +.+...++.. ...++.++++..+++++.++++++.+
T Consensus 208 sK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~a~~~~l~~~~~---- 266 (371)
T 2e7j_A 208 HKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNK-----------------EVELLGCTARGATIITLMASFPHVRE---- 266 (371)
T ss_dssp HHHSSCCSSCEEEEECTTTTTTTTCBCSSCTTS-----------------BGGGTTCCCCSHHHHHHHHHHHHHHH----
T ss_pred CcCCCCCCCcEEEEEechhhhhhccccccCccc-----------------ccccccCCcCHHHHHHHHHHHHHHHH----
Confidence 9987767789999999988776 6655332111 12244688888888888889888754
Q ss_pred HHHHHH--HHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeecc
Q 010538 353 AICRHI--ASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRT 430 (508)
Q Consensus 353 ~i~~~~--~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~ 430 (508)
.+.+++ +++++++.+.|+++ +++++.+... .++++++.++ + ..++.+.|.++||.+++
T Consensus 267 ~~~~~~~~~~~~~~l~~~L~~~-------~~~~~~~~~~------~~~~~~~~~~--~-----~~~~~~~l~~~gi~~~~ 326 (371)
T 2e7j_A 267 RIKRWDEEVEKARRFAAEMEKL-------GIKQLGDNPH------NHDLMFFHAE--V-----LYEISKKAKGGRFFLYR 326 (371)
T ss_dssp HGGGHHHHHHHHHHHHHHHHHT-------TCEEESSSSC------CSSEEEEECH--H-----HHHHHHHSSSGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-------CcEEecCCCc------cCceEEEECC--C-----HHHHHHHHHHCCEEEEe
Confidence 667788 89999999999886 5777765421 2678999886 1 23578888889999865
Q ss_pred CCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEE-EecCCC-CCHHHHHHHHHhhhhhhh
Q 010538 431 GCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIR-VSFGYM-STFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 431 g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iR-is~~~~-~t~eev~~l~~~~~~~~~ 500 (508)
..+ .+ . ..+..++.+| ++++.+ +|.+|++++++.|+++++
T Consensus 327 -~~~-------~~-----------~-----------~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~ 368 (371)
T 2e7j_A 327 -ELK-------SR-----------K-----------IHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIE 368 (371)
T ss_dssp -HHH-------HT-----------T-----------EECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred -ccc-------cc-----------c-----------ccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHH
Confidence 110 00 0 0001257899 999998 999999999999998765
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-32 Score=276.77 Aligned_cols=344 Identities=12% Similarity=0.128 Sum_probs=253.0
Q ss_pred CeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCc-cch---hhhhhHHHHHHHHHHHHHcCCC-CCCceEEEcCCh-HH
Q 010538 41 TVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQ-SDI---SLATCDIVRAAREQVLDYFNAS-MKDYKCIFTSGA-TA 114 (508)
Q Consensus 41 ~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~r~~la~~~~~~-~~~~~i~~t~g~-t~ 114 (508)
.+|+++.+..++|+.+++++.+.+ ... .+++.. +.. +.......+++++++++++|++ ++ +|++|+|+ |+
T Consensus 3 ~~~~~~~g~~~~p~~v~~a~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~--~v~~~~g~gt~ 78 (360)
T 1w23_A 3 QVFNFNAGPSALPKPALERAQKEL-LNF-NDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDY--QILFLQGGASL 78 (360)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTS-SSS-TTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTE--EEEEESSHHHH
T ss_pred ceEeecCCCcCCCHHHHHHHHHHh-hhh-ccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCc--eEEEECCcchH
Confidence 467888888888999998876643 332 444422 212 3445677889999999999997 45 89999999 99
Q ss_pred HHHHHHhhcCCC--CCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC-ccCccccccccccccccccchhhhhcCC-
Q 010538 115 ALKLVGEAFPWS--HQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE-AVDNDGLSESLVTSTKISLLPIQRRKGA- 190 (508)
Q Consensus 115 al~~~~~~l~~~--~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~- 190 (508)
|+.+++.++..+ ++++|+++...|++. ..++..| +++.+|++. ++.+ |+++++ +
T Consensus 79 al~~~~~~l~~~~~~g~~vi~~~~~~~~~----~~~~~~g-~~~~v~~~~~~~~~---------------d~~~l~--~~ 136 (360)
T 1w23_A 79 QFTMLPMNLLTKGTIGNYVLTGSWSEKAL----KEAKLLG-ETHIAASTKANSYQ---------------SIPDFS--EF 136 (360)
T ss_dssp HHHHHHHHHCCTTCEEEEEECSHHHHHHH----HHHHTTS-EEEEEEECGGGTSC---------------SCCCGG--GC
T ss_pred HHHHHHHHhcCCCCcccEEEecchhHHHH----HHHHHhC-CeEEeecccccCcC---------------CccchH--hh
Confidence 999998888442 356777777666542 3345679 999999874 4434 456677 4
Q ss_pred CCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEE
Q 010538 191 SFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVV 270 (508)
Q Consensus 191 ~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~ 270 (508)
++ +++|++|++++++||||.++| + ++++ +|+++|+|++|+.+..++++..+ |+++
T Consensus 137 ~i------~~~~k~v~~~~~~nptG~~~~--~---i~~~------------~~~~li~D~a~~~~~~~~~~~~~--di~~ 191 (360)
T 1w23_A 137 QL------NENDAYLHITSNNTIYGTQYQ--N---FPEI------------NHAPLIADMSSDILSRPLKVNQF--GMIY 191 (360)
T ss_dssp CC------CTTEEEEEEESEETTTTEECS--S---CCCC------------CSSCEEEECTTTTTSSCCCGGGC--SEEE
T ss_pred cc------CCCCCEEEEeCCCCCcceecc--c---cccc------------CCceEEEechhhcCCCCcCcccC--CEEE
Confidence 43 568999999999999999988 2 2234 89999999999999988877654 8999
Q ss_pred EeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhc-
Q 010538 271 MSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSL- 349 (508)
Q Consensus 271 ~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~- 349 (508)
+|+||++| |.|+|+++++++.++.+.+.. ++.. .+... ...++..++++...++++.++++++.+.
T Consensus 192 ~s~sK~~~-~~G~G~~~~~~~~~~~~~~~~-~~~~--------~~~~~---~~~~~~~~~~~~~~~~~~~~al~~~~~~~ 258 (360)
T 1w23_A 192 AGAQKNLG-PSGVTVVIVKKDLLNTKVEQV-PTML--------QYATH---IKSDSLYNTPPTFSIYMLRNVLDWIKDLG 258 (360)
T ss_dssp EETTTTTS-CTTCEEEEEEHHHHCSCCTTC-CGGG--------CHHHH---HHTTTCSSCCCHHHHHHHHHHHHHHHHTT
T ss_pred EEcccccC-CCCcEEEEEcHHHHhhcccCC-cchh--------hhhhh---hhccCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 99999998 889999999999877666542 1110 00000 0123456789999999999999987766
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcccCCCCCceE-EEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCee
Q 010538 350 TVPAICRHIASLGMYVRKVLLSLRHENGADVC-TIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQL 428 (508)
Q Consensus 350 g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v 428 (508)
+++.+.++++++++++.+.|++++ ++ ....++.. +.+.+++|.+++. .+..++.+.|.++||.+
T Consensus 259 ~~~~~~~~~~~~~~~l~~~L~~~~------~~~~~~~~~~~-----~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~~ 323 (360)
T 1w23_A 259 GAEAIAKQNEEKAKIIYDTIDESN------GFYVGHAEKGS-----RSLMNVTFNLRNE----ELNQQFLAKAKEQGFVG 323 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT------TSSEESSCGGG-----BCSSEEEEECSSH----HHHHHHHHHHHHTTEES
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcc------CcccccCCchh-----ccCcEEEEEcCCC----ccHHHHHHHHHHCCeee
Confidence 689999999999999999999873 33 44321111 1144899988642 12235777788899998
Q ss_pred ccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 429 RTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 429 ~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
++|.. ..+++|+|++.++|.+|+++++++|+++++
T Consensus 324 ~~~~~-------------------------------------~~~~iRis~~~~~~~~~i~~~~~~l~~~~~ 358 (360)
T 1w23_A 324 LNGHR-------------------------------------SVGGCRASIYNAVPIDACIALRELMIQFKE 358 (360)
T ss_dssp CBCCT-------------------------------------TTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred ecCCC-------------------------------------CCCeEEEEecCCCCHHHHHHHHHHHHHHHh
Confidence 77642 146799999999999999999999998764
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-32 Score=276.04 Aligned_cols=355 Identities=13% Similarity=0.067 Sum_probs=254.8
Q ss_pred eeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC----CCCceEEEcCChHHHHH
Q 010538 42 VYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS----MKDYKCIFTSGATAALK 117 (508)
Q Consensus 42 iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~----~~~~~i~~t~g~t~al~ 117 (508)
.++...+...+++.+++++.+.. . + + . .........+++++++++++.. ++ +|++|+|+|+|+.
T Consensus 6 ~~~~~p~p~~~~~~v~~a~~~~~-~----~-~-~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~v~~~~g~t~al~ 73 (385)
T 2bkw_A 6 DTLLIPGPIILSGAVQKALDVPS-L----G-H-T---SPEFVSIFQRVLKNTRAVFKSAAASKSQ--PFVLAGSGTLGWD 73 (385)
T ss_dssp CEECSSSSCCCCHHHHHTTSCCC-C----C-T-T---SHHHHHHHHHHHHHHHHHTTCCGGGTCE--EEEEESCTTHHHH
T ss_pred ceeecCCCcCchHHHHHHHhccc-c----c-c-C---CHHHHHHHHHHHHHHHHHhCCCCCCCCc--eEEEcCchHHHHH
Confidence 35555666667888776653211 1 1 1 1 1122345666788888888763 56 8999999999999
Q ss_pred HHHhhcCC--CCCCeEEEecccccchHHHHHHHHhcCCeEEEEcc-CCccCccccccccccccccccchhhhhcCCCCCC
Q 010538 118 LVGEAFPW--SHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDV-EEAVDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 118 ~~~~~l~~--~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~-~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
+++.++.. ++|++|++....+.... +...++..|++++.+|. +.++.+ |+++++ +++.+
T Consensus 74 ~~~~~~~~~~~~gd~vlv~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~~---------------d~~~l~--~~l~~ 135 (385)
T 2bkw_A 74 IFASNFILSKAPNKNVLVVSTGTFSDR-FADCLRSYGAQVDVVRPLKIGESV---------------PLELIT--EKLSQ 135 (385)
T ss_dssp HHHHHHSCTTCSCCEEEEECSSHHHHH-HHHHHHHTTCEEEEECCSSTTSCC---------------CHHHHH--HHHHH
T ss_pred HHHHHHhccCCCCCeEEEEcCCcchHH-HHHHHHHcCCceEEEecCCCCCCC---------------CHHHHH--HHHhc
Confidence 99999842 67888877643222111 12455667999999998 655555 577887 54421
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC--CeEEEEeccccCCCCCCCCCCCCCcEEEEe
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG--RWMVLIDAAKGCVTQPPDLSKYPVDFVVMS 272 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~--g~~vivD~a~~~g~~~~d~~~~~~D~~~~S 272 (508)
+++++|++++++|+||.++|+++|.++|++ + |+++|+|++|+.|..++++..+++|++++|
T Consensus 136 -----~~~~~v~~~~~~nptG~~~~l~~i~~~~~~------------~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s 198 (385)
T 2bkw_A 136 -----NSYGAVTVTHVDTSTAVLSDLKAISQAIKQ------------TSPETFFVVDAVCSIGCEEFEFDEWGVDFALTA 198 (385)
T ss_dssp -----SCCSEEEEESEETTTTEECCHHHHHHHHHH------------HCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEE
T ss_pred -----CCCCEEEEEccCCCcCeEcCHHHHHHHHHh------------hCCCCEEEEECccccCCccccccccCceEEEec
Confidence 268999999999999999999999999997 8 999999999999998888888889999999
Q ss_pred ccccccCCCcceEEEEechhHh-hhccc----cccCceEEecccchhhhhh---ccCccccccCCCCChhHHHHHHHHHH
Q 010538 273 FYKIFGYPTGLGALIMRNDAAK-LLKNT----YFSGGTVAASIADIDFVKR---RQGVEELFEDGTASFLSIASIRHGFN 344 (508)
Q Consensus 273 ~~K~~g~P~G~G~l~~~~~~~~-~l~~~----~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~gt~~~~~~~~l~~al~ 344 (508)
+||++++|.|+|+++++++.++ .+++. ..+++. +...+... ... ......++++...++++.++++
T Consensus 199 ~~K~~~~~~G~G~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~al~ 272 (385)
T 2bkw_A 199 SQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFS-----SLRRWTPIMENYEA-GKGAYFATPPVQLINSLDVALK 272 (385)
T ss_dssp SSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTT-----CHHHHHHHHHHHHT-TCCCCSSCCCHHHHHHHHHHHH
T ss_pred CccccccCCcceEEEEcHHHHHHHHhhccCCCCCceee-----cHHHHhhHHHhhhc-cCCCCCCCCCHHHHHHHHHHHH
Confidence 9997766889999999998876 55321 011110 00001000 000 1112246889999999999999
Q ss_pred HHHhcChHHHHHHHHHHHHHHHHHH-hcccCCCCCceEEEecCCCCCcccC-CCCceEEEEeeCCCCCccCHHHHHHHHh
Q 010538 345 LINSLTVPAICRHIASLGMYVRKVL-LSLRHENGADVCTIYGTYTSEVSYH-DTGSMVSFNLKRPDGSWFGYREVEKLAS 422 (508)
Q Consensus 345 ~~~~~g~~~i~~~~~~l~~~l~~~L-~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~l~~~L~ 422 (508)
++.+.|++.+.++++++++++.+.| +++ +++++.+... . ..+++++|.+++ ..++.+.|.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-------g~~~~~~~~~----~~~~~~~~~~~~~~-------~~~~~~~l~ 334 (385)
T 2bkw_A 273 EILEEGLHKRWDLHREMSDWFKDSLVNGL-------QLTSVSRYPS----NMSAHGLTAVYVAD-------PPDVIAFLK 334 (385)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHTTT-------CCEESSCSSS----TTBCSSCEEEECSC-------HHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHHHHhc-------CceecccCcc----cccCCceEEEecCC-------HHHHHHHHH
Confidence 8877789999999999999999999 876 5777753211 1 237899998864 235888888
Q ss_pred hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEe-cC---CCCCHHHHHHHHHhhhhh
Q 010538 423 LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVS-FG---YMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 423 ~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis-~~---~~~t~eev~~l~~~~~~~ 498 (508)
++||.+++|..+.. ..+++|+| ++ +.+|.+|++++++.|+++
T Consensus 335 ~~gi~v~~g~~~~~----------------------------------~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~ 380 (385)
T 2bkw_A 335 SHGVVIAGGIHKDI----------------------------------GPKYIRIGHMGVTACNKNLPYMKNCFDLIKLA 380 (385)
T ss_dssp HTTEECBCCCCTTT----------------------------------GGGEEEECCCGGGTSSTTCTHHHHHHHHHHHH
T ss_pred HCCeEEeCCCCccc----------------------------------CCCEEEEEccccccccCCHHHHHHHHHHHHHH
Confidence 89999998764321 25789999 65 357999999999999887
Q ss_pred hhh
Q 010538 499 VNF 501 (508)
Q Consensus 499 ~~~ 501 (508)
++.
T Consensus 381 ~~~ 383 (385)
T 2bkw_A 381 LQR 383 (385)
T ss_dssp TTC
T ss_pred HHh
Confidence 653
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-31 Score=273.28 Aligned_cols=355 Identities=13% Similarity=0.016 Sum_probs=256.7
Q ss_pred CeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhh-HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHH
Q 010538 41 TVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATC-DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLV 119 (508)
Q Consensus 41 ~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~ 119 (508)
.+.|+.+ ...+++.+++++.+. ++ + .. .... ...+++++++++++|.+.+..++++|+|+|+|+.++
T Consensus 5 ~~~~~~g-p~~~~~~v~~a~~~~-----~~--~---~~-~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~ 72 (366)
T 1m32_A 5 YLLLTPG-PLTTSRTVKEAMLFD-----SC--T---WD-DDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAV 72 (366)
T ss_dssp CEECSSS-SCCCCHHHHHTTCCC-----CC--T---TS-HHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHH
T ss_pred cccccCC-CcCCCHHHHHHHhhh-----hc--C---CC-HHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHH
Confidence 4445545 445688887765331 11 1 11 1112 557889999999999421101699999999999999
Q ss_pred HhhcCCCCCCeEEEe-cccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCC
Q 010538 120 GEAFPWSHQSSYMYT-MENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPA 198 (508)
Q Consensus 120 ~~~l~~~~g~~vl~~-~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~ 198 (508)
+.++ .++|++|++. ...|++. +...++..|++++.+|.+..+.+ |+++++ +++.+
T Consensus 73 ~~~~-~~~gd~vi~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~--~~l~~---- 128 (366)
T 1m32_A 73 LGSA-LGPQDKVLIVSNGAYGAR--MVEMAGLMGIAHHAYDCGEVARP---------------DVQAID--AILNA---- 128 (366)
T ss_dssp HHHS-CCTTCCEEEEESSHHHHH--HHHHHHHHTCCEEEEECCTTSCC---------------CHHHHH--HHHHH----
T ss_pred HHHh-cCCCCeEEEEeCCCccHH--HHHHHHHhCCceEEEeCCCCCCC---------------CHHHHH--HHHhc----
Confidence 9998 5677776554 5677653 23444556999999998765545 577777 55532
Q ss_pred CCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEecccccc
Q 010538 199 GDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFG 278 (508)
Q Consensus 199 ~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g 278 (508)
.+++++|++++++||||.++|+++|.++|++ +|+++|+|++|+.+..++++..+++|++++|+||+++
T Consensus 129 ~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~~K~~~ 196 (366)
T 1m32_A 129 DPTISHIAMVHSETTTGMLNPIDEVGALAHR------------YGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQ 196 (366)
T ss_dssp CTTCCEEEEESEETTTTEECCHHHHHHHHHH------------HTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTC
T ss_pred CCCeEEEEEecccCCcceecCHHHHHHHHHH------------cCCEEEEECCccccCcCccccccCccEEEecCccccc
Confidence 1357899999999999999999999999998 8999999999999988888877789999999999875
Q ss_pred CCCcceEEEEechhHhhhccccccCceEEecccc-hhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcC-hHHHHH
Q 010538 279 YPTGLGALIMRNDAAKLLKNTYFSGGTVAASIAD-IDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLT-VPAICR 356 (508)
Q Consensus 279 ~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g-~~~i~~ 356 (508)
+|.|+|++++++++++.+.+...+.. .+. ..+... ........++++...++++.++++.+.+.| ++++.+
T Consensus 197 ~~~g~G~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~ 269 (366)
T 1m32_A 197 GVPGFAFVIAREQKLAACKGHSRSLS-----LDLYAQWRCM--EDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQ 269 (366)
T ss_dssp CCSSEEEEEEEHHHHTTCTTCCSCST-----TCHHHHHHHH--HHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CCCceEEEEECHHHHHhhcCCCCCcc-----ccHHHHHhhh--cccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHH
Confidence 58899999999998776654311100 000 000000 000012245788888989999999887777 889999
Q ss_pred HHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCc
Q 010538 357 HIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNP 436 (508)
Q Consensus 357 ~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~ 436 (508)
+++++++++.+.|+++ +++++.+... +.+.++++.+++.. ..+..++.+.|.++||.+++|..|
T Consensus 270 ~~~~~~~~l~~~L~~~-------~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~v~~~~~~-- 333 (366)
T 1m32_A 270 RYQQNQRSLVAGMRAL-------GFNTLLDDEL-----HSPIITAFYSPEDP--QYRFSEFYRRLKEQGFVIYPGKVS-- 333 (366)
T ss_dssp HHHHHHHHHHHHHHHT-------TCCBSSCGGG-----BCSSEEEEECCCCT--TCCHHHHHHHHHHTTEECEECCCS--
T ss_pred HHHHHHHHHHHHHHHC-------CCeeccCchh-----cCceEEEEEcCccC--CCCHHHHHHHHHHCCEEEECCcCC--
Confidence 9999999999999886 4665554211 12558899886310 134456888998999999987654
Q ss_pred hHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 437 GACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 437 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
..+++|++++.++|.+|+++++++|+++++
T Consensus 334 ----------------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 363 (366)
T 1m32_A 334 ----------------------------------QSDCFRIGNIGEVYAADITALLTAIRTAMY 363 (366)
T ss_dssp ----------------------------------SSCEEEEECCSSCCHHHHHHHHHHHHHHCT
T ss_pred ----------------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 157899999999999999999999988764
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-31 Score=271.56 Aligned_cols=334 Identities=14% Similarity=0.017 Sum_probs=255.0
Q ss_pred CeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHH
Q 010538 41 TVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVG 120 (508)
Q Consensus 41 ~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~ 120 (508)
..||+++.+ ++++.+++++.+ .+...+.++. .+ ....+..+++++++++++|++++ +|++|+|+|+|+.+++
T Consensus 32 ~~~~~~~~~-~~~~~v~~a~~~-~~~~~~~~~~-~~---~~~~~~~~~l~~~la~~~~~~~~--~i~~~~ggt~a~~~~~ 103 (397)
T 3f9t_A 32 GNIFGSMCS-NVLPITRKIVDI-FLETNLGDPG-LF---KGTKLLEEKAVALLGSLLNNKDA--YGHIVSGGTEANLMAL 103 (397)
T ss_dssp TCBCSCSCC-CCCTHHHHHHHH-HTTCCTTSGG-GB---HHHHHHHHHHHHHHHHHTTCTTC--EEEEESCHHHHHHHHH
T ss_pred CCeEEEecC-CCcHHHHHHHHH-HHhhcCCCcc-cC---hhHHHHHHHHHHHHHHHhCCCCC--CEEEecCcHHHHHHHH
Confidence 468888755 457778877755 3333333332 11 23567788899999999999988 8999999999999999
Q ss_pred hhcCCC------------CCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhc
Q 010538 121 EAFPWS------------HQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRK 188 (508)
Q Consensus 121 ~~l~~~------------~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~ 188 (508)
.++... +|++|+++...|+++....+. .|++++.+|.+.++.+ |+++++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~---~g~~~~~v~~~~~~~~---------------d~~~l~- 164 (397)
T 3f9t_A 104 RCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREM---MDLEYIYAPIKEDYTI---------------DEKFVK- 164 (397)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHH---HTCEEEEECBCTTSSB---------------CHHHHH-
T ss_pred HHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHHH---cCceeEEEeeCCCCcC---------------CHHHHH-
Confidence 887432 489999999999887665544 4999999999876655 678887
Q ss_pred CCCCCCCCCCCC-CceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC----------
Q 010538 189 GASFPERDPAGD-AYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ---------- 257 (508)
Q Consensus 189 ~~~l~~~~~~~~-~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~---------- 257 (508)
+++ .+ ++++|++++++|+||.+.|+++|.++|++ +|+++|+|++|+.+..
T Consensus 165 -~~i------~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~li~Dea~~~~~~~~~~~~~~~~ 225 (397)
T 3f9t_A 165 -DAV------EDYDVDGIIGIAGTTELGTIDNIEELSKIAKE------------NNIYIHVDAAFGGLVIPFLDDKYKKK 225 (397)
T ss_dssp -HHH------HHSCCCEEEEEBSCTTTCCBCCHHHHHHHHHH------------HTCEEEEECTTGGGTGGGCCGGGCCT
T ss_pred -HHH------hhcCCeEEEEECCCCCCCCCCCHHHHHHHHHH------------hCCeEEEEccccchhhhhcccccccc
Confidence 544 33 78999999999999999999999999998 8999999999985433
Q ss_pred ----CCCCCCCCCcEEEEeccccccCCCcceEEEEechhH-hhhc---cccccCceEEecccchhhhhhccCccccccCC
Q 010538 258 ----PPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAA-KLLK---NTYFSGGTVAASIADIDFVKRRQGVEELFEDG 329 (508)
Q Consensus 258 ----~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~-~~l~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 329 (508)
++++.. ++|++++|+||++++|.++|+++++++.+ +.+. +.+.++ ......+
T Consensus 226 ~~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~ 285 (397)
T 3f9t_A 226 GVNYKFDFSL-GVDSITIDPHKMGHCPIPSGGILFKDIGYKRYLDVDAPYLTET-------------------RQATILG 285 (397)
T ss_dssp TCCCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEESSGGGGGGTCEECTTSSSS-------------------EECSSCS
T ss_pred cccccccccc-cCCeEEEccccccCCCCCceEEEEeCHHHHHhhccCCccccCC-------------------Ccccccc
Confidence 555555 89999999999886577799999987643 3332 221111 1112235
Q ss_pred CCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCC
Q 010538 330 TASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDG 409 (508)
Q Consensus 330 t~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 409 (508)
+.+.....++.+++..+...+++++.++..++++++.+.|+++ +++++.++. +++++|.+++
T Consensus 286 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~--------~~~~~~~~~~--- 347 (397)
T 3f9t_A 286 TRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKEN-------NFKPVIEPI--------LNIVAIEDED--- 347 (397)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TCCBSSCCS--------SSEEEEECTT---
T ss_pred ccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHC-------CCEEEcCCC--------ccEEEEEeCC---
Confidence 5555567788888887777778999999999999999999987 466555533 7888888754
Q ss_pred CccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHH
Q 010538 410 SWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAK 489 (508)
Q Consensus 410 ~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~ 489 (508)
..++.+.|.++||.++++. .++++|++++.++|.+|++
T Consensus 348 ----~~~~~~~l~~~gi~v~~~~--------------------------------------~~~~~Ri~~~~~~~~e~i~ 385 (397)
T 3f9t_A 348 ----YKEVCKKLRDRGIYVSVCN--------------------------------------CVKALRIVVMPHIKREHID 385 (397)
T ss_dssp ----HHHHHHHHHHTTCBCEECS--------------------------------------SSSEEEEECCTTCCHHHHH
T ss_pred ----HHHHHHHHHhCCeEEeccC--------------------------------------CCCEEEEEEcCCCCHHHHH
Confidence 2358888989999998763 1478999999999999999
Q ss_pred HHHHhhhhhhh
Q 010538 490 VNRCSSFDFVN 500 (508)
Q Consensus 490 ~l~~~~~~~~~ 500 (508)
++++.|+++++
T Consensus 386 ~~~~~l~~~l~ 396 (397)
T 3f9t_A 386 NFIEILNSIKR 396 (397)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHhhC
Confidence 99999988753
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-33 Score=293.37 Aligned_cols=367 Identities=11% Similarity=-0.016 Sum_probs=252.6
Q ss_pred CchHHHHHHhhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCC----------ccchhhhhhHHHHHHHHHH
Q 010538 24 KSIDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHS----------QSDISLATCDIVRAAREQV 93 (508)
Q Consensus 24 ~~~~~~r~~~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~r~~l 93 (508)
.++.++|+ +||.+ ++.+|||+++++++++.|.+++....... +.++.. .+..+.....+.+++++++
T Consensus 66 ~~i~~~~~-~~~~~-~~~~yld~aa~~~~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 142 (456)
T 2z67_A 66 EKIKLFLK-FLSMM-DTDKDPKSVRIGEREARTYSKIHEELSSG-FCHGIGRSGNLVDPQPKASGASIMYALTNKILESF 142 (456)
T ss_dssp HHHHHHHH-HHHTT-BGGGCTTCEECSSCCCCCSCHHHHHHTTT-CTTCBSBTTBTTSCCTTBHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHhc-cccccccccccccccccccccccCccccc-cCCCccHHHHHHhhCcccccCcHHHHHHHHHHHHH
Confidence 35778898 99999 78899999999999998888765432111 111111 0111223567788999999
Q ss_pred HHHcCCCCCCceEEEcCChHH-HHHHHHhhcC-CCCCCeEEEecccccchHHHHHHHHhcCCeEEEEcc---CCccCccc
Q 010538 94 LDYFNASMKDYKCIFTSGATA-ALKLVGEAFP-WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDV---EEAVDNDG 168 (508)
Q Consensus 94 a~~~~~~~~~~~i~~t~g~t~-al~~~~~~l~-~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~---~~~~~~~~ 168 (508)
++++|++++ ++||+|+|+ ++.+++.++. +.++++|+++..+|+++... ++..|++++.++. ++++.+
T Consensus 143 a~~~g~~~~---~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~---~~~~G~~~~~v~~~~~~~~~~~-- 214 (456)
T 2z67_A 143 FKQLGLNVH---AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKA---VSFVGMNMRLVETVLDGDRVYV-- 214 (456)
T ss_dssp HHHTTCCCE---EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHH---HHHTTCEEEEECCEEETTEEEC--
T ss_pred HHHcCCCCC---EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHH---HHHcCCCceEEEEeccCCCCCc--
Confidence 999999754 999999994 5554555541 12677888888899986544 4457999999987 444555
Q ss_pred cccccccccccccchhhhhcCCCC-CCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEE
Q 010538 169 LSESLVTSTKISLLPIQRRKGASF-PERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVL 247 (508)
Q Consensus 169 l~~~~~~~~~~~~d~~~l~~~~~l-~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vi 247 (508)
|+++++ ++| ++. ..+++.+|++++++|+||.+.|+++|.++|++ +|++++
T Consensus 215 -------------d~~~l~--~~i~~~~--~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~------------~g~~v~ 265 (456)
T 2z67_A 215 -------------PVEDIE--NAIKKEI--ELGNRPCVLSTLTFFPPRNSDDIVEIAKICEN------------YDIPHI 265 (456)
T ss_dssp -------------CHHHHH--HHHHHHH--HTTCCEEEEEESSCCTTBCCCCHHHHHHHHHH------------HTCCEE
T ss_pred -------------CHHHHH--HHHHHHh--hCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH------------cCCcEE
Confidence 678887 555 210 01367888889999999999999999999998 899999
Q ss_pred EeccccC---CCCCCCCCCC--CCcEEEEeccccccCCCcceEEEEe-chhHhhhccccccCceEEecccchhhhhhccC
Q 010538 248 IDAAKGC---VTQPPDLSKY--PVDFVVMSFYKIFGYPTGLGALIMR-NDAAKLLKNTYFSGGTVAASIADIDFVKRRQG 321 (508)
Q Consensus 248 vD~a~~~---g~~~~d~~~~--~~D~~~~S~~K~~g~P~G~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~ 321 (508)
+|++++. |..+.+...+ ++|++++|+||++++|.|+|+++++ +++++.+.+.+.|+.
T Consensus 266 vD~A~~~~~~g~~~~~~~~~~~~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l~~~~~g~~----------------- 328 (456)
T 2z67_A 266 INGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGRA----------------- 328 (456)
T ss_dssp EECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTSCSCB-----------------
T ss_pred EECcchHHHHHhhHHHHHhhCCCCCEEEEcCCCCcCCCCCeEEEEEcCHHHHhhcCcCCCCCC-----------------
Confidence 9977653 4444443322 7999999999987669999999995 567666666544331
Q ss_pred ccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEE
Q 010538 322 VEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVS 401 (508)
Q Consensus 322 ~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 401 (508)
+....+++.+++..+...|++++.+++.++++++.+.|++++. .+++.++.+ .++++
T Consensus 329 ----------~~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~g~~v~~~----------~~~v~ 385 (456)
T 2z67_A 329 ----------SATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSK---KTGGKFLDV----------ESPIA 385 (456)
T ss_dssp ----------CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HSSCCBCCC----------CCSSE
T ss_pred ----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---ccCCEecCC----------CCeEE
Confidence 1112556666777777778899999999999999999988620 004444432 16677
Q ss_pred EEeeCCCCCccCHHHHHHHHhhCCCe-eccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecC
Q 010538 402 FNLKRPDGSWFGYREVEKLASLSGIQ-LRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFG 480 (508)
Q Consensus 402 ~~~~~~~~~~~~~~~l~~~L~~~gI~-v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~ 480 (508)
|.+... .. ..++.+.|.++||. ++..... + .++ +++|.. ...+++|+|++
T Consensus 386 ~~~~~~-~~---~~~l~~~L~~~gi~~~rv~~~~--g---------------~f~-G~~~~~-------~~~~~vr~s~~ 436 (456)
T 2z67_A 386 SCISVN-SD---PVEIAAKLYNLRVTGPRGIKKT--D---------------HFG-NCYLGT-------YTHDYIVMNAA 436 (456)
T ss_dssp EEEECS-SC---HHHHHHHHHHTTEESCEEECTT--C---------------HHH-HTCSSC-------CSCCEEEEECC
T ss_pred EEEecc-cH---HHHHHHHHHHcCCCcceEEeec--C---------------ccc-cccccc-------cCcchhhhhhh
Confidence 777311 11 23578888888862 2221000 0 011 112221 12478999999
Q ss_pred CCCCHHHHHHHHHhhhhhh
Q 010538 481 YMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 481 ~~~t~eev~~l~~~~~~~~ 499 (508)
+++|.+||+++++.|++++
T Consensus 437 ~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 437 IGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp TTCCHHHHHHHHHHHHTC-
T ss_pred cCCCHHHHHHHHHHHHHHh
Confidence 9999999999999998764
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-30 Score=274.96 Aligned_cols=352 Identities=14% Similarity=0.025 Sum_probs=253.1
Q ss_pred CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCC---ceEEEcCChHHHHHHHHhhcCC-
Q 010538 50 TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKD---YKCIFTSGATAALKLVGEAFPW- 125 (508)
Q Consensus 50 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~---~~i~~t~g~t~al~~~~~~l~~- 125 (508)
+++++.+.+++.+.+ .. ++. .+..+....++.+++++++++++|++.+. ..+++|+|+|+|+.+++.++..
T Consensus 52 ~~~~~~v~e~~~~a~-~~---~~~-~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~ 126 (452)
T 2dgk_A 52 TWDDENVHKLMDLSI-NK---NWI-DKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWR 126 (452)
T ss_dssp CCCCHHHHHHHHHTT-TC---BTT-CTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHh-cc---CCC-ChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHH
Confidence 456667766654433 21 111 12223456678889999999999998751 1389999999999998877631
Q ss_pred ------CCC-----CeEEEecccccchHHHHHHHHhcCCeEEEEccCC-ccCccccccccccccccccchhhhhcCCCCC
Q 010538 126 ------SHQ-----SSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE-AVDNDGLSESLVTSTKISLLPIQRRKGASFP 193 (508)
Q Consensus 126 ------~~g-----~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~ 193 (508)
.+| ++|+++. .|+++.... +..|++++.||.+. ++.+ |+++++ ++|
T Consensus 127 ~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~---~~~G~~v~~v~~~~~~~~~---------------d~~~l~--~~i- 184 (452)
T 2dgk_A 127 WRKRMEAAGKPTDKPNLVCGP-VQICWHKFA---RYWDVELREIPMRPGQLFM---------------DPKRMI--EAC- 184 (452)
T ss_dssp HHHHHHHTTCCCSCCEEEESS-CCHHHHHHH---HHTTCEEEECCCBTTBCSC---------------CHHHHH--HHC-
T ss_pred HHHHHHhcCCCCCCcEEEECC-CcHHHHHHH---HHcCceEEEEecCCCCCeE---------------CHHHHH--HHH-
Confidence 023 5899988 888776554 44699999999875 4555 689998 555
Q ss_pred CCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC------CeEEEEeccccCCCC-------CCC
Q 010538 194 ERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG------RWMVLIDAAKGCVTQ-------PPD 260 (508)
Q Consensus 194 ~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~------g~~vivD~a~~~g~~-------~~d 260 (508)
+++|++|++++++|+||.+.|+++|.++|++ + |++++||++++.+.. +.+
T Consensus 185 -----~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~------------~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~ 247 (452)
T 2dgk_A 185 -----DENTIGVVPTFGVTYTGNYEFPQPLHDALDK------------FQADTGIDIDMHIDAASGGFLAPFVAPDIVWD 247 (452)
T ss_dssp -----CTTEEEEECBBSCTTTCBBCCHHHHHHHHHH------------HHHHHCCCCCEEEECTTGGGTHHHHCTTCCCS
T ss_pred -----hhCCEEEEEEcCCcCCcccCCHHHHHHHHHH------------HhhccCCCCcEEEEcccHHHHHHhhCccchhh
Confidence 4578999999999999999999999999996 4 999999999987542 345
Q ss_pred CCCCCCcEEEEeccccccCCCcceEEEEech-hH-hhhc--cccccCceEEecccchhhhhhccCccccccCCCCChhHH
Q 010538 261 LSKYPVDFVVMSFYKIFGYPTGLGALIMRND-AA-KLLK--NTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSI 336 (508)
Q Consensus 261 ~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~-~~-~~l~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~ 336 (508)
+...++|++++|+|||+++|.|+|+++++++ .+ +.+. +.+.++.. ......++.+....
T Consensus 248 ~~~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~r~~~~~ 310 (452)
T 2dgk_A 248 FRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQI-----------------GTFAINFSRPAGQV 310 (452)
T ss_dssp TTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECCTTCCE-----------------EECCSCCSCBCHHH
T ss_pred cCCCCCcEEEECcccccCCCCCeEEEEEcCHHHHHHHhccCccccCCCC-----------------CCcccCCCChhHHH
Confidence 5555899999999998766889999999765 32 3221 22222211 00012345556567
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHH
Q 010538 337 ASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYRE 416 (508)
Q Consensus 337 ~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 416 (508)
+++++++..+...|++++.+++.++++++.+.|+++ ++++++.+... ....++++|++++.....++..+
T Consensus 311 ~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~------~~~~~~~~~~~----~~~~~~v~f~~~~~~~~~~~~~~ 380 (452)
T 2dgk_A 311 IAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKL------GPYEFICTGRP----DEGIPAVCFKLKDGEDPGYTLYD 380 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------SSEEEEEECCT----TTBSSEEEEEECTTCCCSCCHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC------CCeEEecCCCC----CCCeEEEEEEecCcccccCCHHH
Confidence 777788887777788999999999999999999987 36888865210 01278999998753222234456
Q ss_pred HHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhh
Q 010538 417 VEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 417 l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~ 496 (508)
+.+.|.++||.++... .+... ...+++|+|++.++|.+|++++++.|+
T Consensus 381 l~~~L~~~Gi~v~~~~--~~~~~------------------------------~~~~~lRis~~~~~t~e~id~li~~l~ 428 (452)
T 2dgk_A 381 LSERLRLRGWQVPAFT--LGGEA------------------------------TDIVVMRIMCRRGFEMDFAELLLEDYK 428 (452)
T ss_dssp HHHHHHHTTCBCCEEE--CSTTC------------------------------TTCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCeeeeee--CCccc------------------------------CCeEEEEEEecCCCCHHHHHHHHHHHH
Confidence 8999999999876521 11100 015689999999999999999999999
Q ss_pred hhhhhhhh
Q 010538 497 DFVNFSQF 504 (508)
Q Consensus 497 ~~~~~~~~ 504 (508)
++++.++.
T Consensus 429 ~~~~~~~~ 436 (452)
T 2dgk_A 429 ASLKYLSD 436 (452)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 98876543
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=281.24 Aligned_cols=342 Identities=13% Similarity=0.063 Sum_probs=250.6
Q ss_pred cCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHH
Q 010538 69 YGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYA 148 (508)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~ 148 (508)
++++... ..+....+.++++++.+++++|++ + .++||+|+|+|+++++..+ .+|++||+...+|++. .+...+
T Consensus 21 ~~~~~~~-h~~~~~~~~~~~~~~~l~~~~~~~-~--~v~~~~sgt~a~~~~~~~~--~~gd~vi~~~~~~~~~-~~~~~~ 93 (379)
T 3ke3_A 21 YTDRALN-HMSKAFQEVMNDLLSNLKTVYNAE-A--AVIIPGSGTYGMEAVARQL--TIDEDCLIIRNGWFSY-RWTQIL 93 (379)
T ss_dssp CCTTSCC-TTSHHHHHHHHHHHHHHHHHHTCS-E--EEEEESCHHHHHHHHHHHH--CTTCEEEEEECSHHHH-HHHHHH
T ss_pred ccCCCCC-CCCHHHHHHHHHHHHHHHHHhCCC-C--EEEEcCChhHHHHHHHHhC--CCCCeEEEEeCCchhH-HHHHHH
Confidence 4455433 335567789999999999999998 5 7999999999999988765 5789999888777664 344555
Q ss_pred HhcC--CeEEEEccCCcc------CccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC-
Q 010538 149 LSQG--AAAFAIDVEEAV------DNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN- 219 (508)
Q Consensus 149 ~~~G--~~v~~v~~~~~~------~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~- 219 (508)
+..| .++..++.+..+ ... ..|+++++ ++++ .+++++|++++++|+||.+.|
T Consensus 94 ~~~g~~~~~~~~~~~~~g~~~~~~~~~------------~~d~~~l~--~~i~-----~~~~~~v~~~~~~~~~G~~~~~ 154 (379)
T 3ke3_A 94 EKGKFAKSSTVLTAERTEDTEAPKPFA------------PVDIETAV--AKIK-----EDKSAIVYAPHVETSSGIILSE 154 (379)
T ss_dssp HHHCCSSEEEEEECEESSCCSSCCCEE------------CCCHHHHH--HHHH-----HHTCSEEEEESEETTTTEECCH
T ss_pred HHhCCCCceEEEeccccccccccCCCC------------CCCHHHHH--HHHh-----hcCCcEEEEEeecCCCceeCCH
Confidence 5555 478888764311 000 11677777 4442 236799999999999999999
Q ss_pred --HHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhc
Q 010538 220 --LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLK 297 (508)
Q Consensus 220 --i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~ 297 (508)
+++|.++|++ +|+++++|++|+ |..++++.++++|++++|+||++++|.|+|++++++++++.+.
T Consensus 155 ~~l~~i~~~~~~------------~~~~li~D~~~~-g~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~l~ 221 (379)
T 3ke3_A 155 EYIKALSEAVHS------------VGGLLVIDCIAS-GCVWLDMKELGIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVE 221 (379)
T ss_dssp HHHHHHHHHHHH------------TTCEEEEECTTC-TTCCCCHHHHTCSEEEECTTTTTCSCCCEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHH------------cCCEEEEEeccc-CCccccccccCCCEEEecchhhcCCCCceEEEEECHHHHHhhh
Confidence 8888888887 999999999999 9889988888999999999998887989999999999988776
Q ss_pred cccccCceEEecccchhhhhh---ccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccC
Q 010538 298 NTYFSGGTVAASIADIDFVKR---RQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRH 374 (508)
Q Consensus 298 ~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~ 374 (508)
+...... ..+...|... ... ..+...+|+|+..++++.++++++.+.|++++.++..++++++++.|+++
T Consensus 222 ~~~~~~~----~~~~~~~~~~~~~~~~-g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~-- 294 (379)
T 3ke3_A 222 STESNCF----SLDLKQWLTIMRAYEN-GGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDK-- 294 (379)
T ss_dssp TCCCSCS----TTCHHHHHHHHHHHHT-TSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred cCCCCce----eecHHHHHHHHHhhhc-cCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--
Confidence 5311110 0000011100 000 01112358999999999999999988899999999999999999999987
Q ss_pred CCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhh
Q 010538 375 ENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNI 454 (508)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~ 454 (508)
+++++.++..+ ...++.+..++.+ ....+.|.++||.+++|..|....
T Consensus 295 -----g~~~~~~~~~~-----~~~i~~~~~~~~~------~~~~~~L~~~Gi~v~~g~~~~~~~---------------- 342 (379)
T 3ke3_A 295 -----GIESVAAEGFE-----APGVVVSYTERDD------MHKGSAFAEAGLQIAAGVPLKVGE---------------- 342 (379)
T ss_dssp -----TCCBSBCTTCB-----CSSEEEEECSCHH------HHSSHHHHHTTCCCEECCCCSSCC----------------
T ss_pred -----CCEecCCcccc-----CceEEEEccCCcc------hHHHHHHHHCCeEEeCCccccccc----------------
Confidence 57776654321 1334444443211 012567888999999987664321
Q ss_pred hcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 455 EAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
....+.+|||++.++|.+||++++++|+++++.+
T Consensus 343 --------------~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~ 376 (379)
T 3ke3_A 343 --------------PDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEV 376 (379)
T ss_dssp --------------CTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHH
T ss_pred --------------cCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHh
Confidence 0125789999999999999999999999887654
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.6e-30 Score=275.26 Aligned_cols=356 Identities=14% Similarity=0.018 Sum_probs=259.9
Q ss_pred eeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC--CCC-ceEEEcCChHHHHHH
Q 010538 42 VYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS--MKD-YKCIFTSGATAALKL 118 (508)
Q Consensus 42 iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~--~~~-~~i~~t~g~t~al~~ 118 (508)
+++.+..++++++.+.+++.+. +...+.++. ......++.+++++++++++|++ +++ ...++|+|+|+|+++
T Consensus 58 ~~l~s~~t~~~~~~v~~~l~~~-~~~~~~~~~----~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~ 132 (502)
T 3hbx_A 58 LNLASFVTTWMEPECDKLIMSS-INKNYVDMD----EYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIML 132 (502)
T ss_dssp GBTTCCSCCCCCHHHHHHHHHT-TTCBTTCTT----TCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHH
T ss_pred ceeccccCCCCCHHHHHHHHHH-hccCCCChh----cChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHH
Confidence 3444444577788887776553 333222222 22335677888999999999998 441 123469999999998
Q ss_pred HHhhcCCC-------CCC-----eEEEecccccchHHHHHHHHhcCCeEEEEccCCc-cCccccccccccccccccchhh
Q 010538 119 VGEAFPWS-------HQS-----SYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA-VDNDGLSESLVTSTKISLLPIQ 185 (508)
Q Consensus 119 ~~~~l~~~-------~g~-----~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~-~~~~~l~~~~~~~~~~~~d~~~ 185 (508)
++.++..+ .|+ +|+++...|+++... ++..|++++.||.+++ +.+ |+++
T Consensus 133 a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~---~~~~G~~~~~v~~~~~~~~~---------------d~~~ 194 (502)
T 3hbx_A 133 AGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKF---ARYFEVELKEVKLSEGYYVM---------------DPQQ 194 (502)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHHH---HHHTTCEEEEECCBTTBCSC---------------CHHH
T ss_pred HHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHHH---HHHcCceeEEEecCCCcCcC---------------CHHH
Confidence 88776322 144 899999999886554 4456999999998764 555 6888
Q ss_pred hhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC------CeEEEEeccccC-----
Q 010538 186 RRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG------RWMVLIDAAKGC----- 254 (508)
Q Consensus 186 l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~------g~~vivD~a~~~----- 254 (508)
++ +++ +++|++|++++++|+||.+.|+++|.++|++ + |++++||++|+.
T Consensus 195 l~--~~i------~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~------------~~~~~~~~~~l~VD~A~~~~~~p~ 254 (502)
T 3hbx_A 195 AV--DMV------DENTICVAAILGSTLNGEFEDVKLLNDLLVE------------KNKETGWDTPIHVDAASGGFIAPF 254 (502)
T ss_dssp HH--HHC------CTTEEEEEEEBSCTTTCCBCCHHHHHHHHHH------------HHHHHCCCCCEEEECTTGGGTHHH
T ss_pred HH--HHH------hhCCEEEEEecCCCCCCcccCHHHHHHHHHH------------hhhccCCCCeEEEECCccchhhhh
Confidence 98 555 4678999999999999999999999999997 7 999999999984
Q ss_pred --CCCCCCCCCCCCcEEEEeccccccCCCcceEEEEechh-Hhhh---ccccccCceEEecccchhhhhhccCccccccC
Q 010538 255 --VTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDA-AKLL---KNTYFSGGTVAASIADIDFVKRRQGVEELFED 328 (508)
Q Consensus 255 --g~~~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~-~~~l---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (508)
+..+.++...++|++++|+||++++|.|+|+++++++. +... .+.+.++.. ......
T Consensus 255 ~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~-----------------~~~~~~ 317 (502)
T 3hbx_A 255 LYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQ-----------------PTFTLN 317 (502)
T ss_dssp HCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECSSSSCE-----------------EECCSC
T ss_pred hCcccccccCCCCceEEEECcccccCCCCCeEEEEEeCHHHhhHHhccCcccccCCC-----------------CCcccc
Confidence 33455666668999999999988669999999997543 2111 122222221 111122
Q ss_pred CCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCC
Q 010538 329 GTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPD 408 (508)
Q Consensus 329 gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 408 (508)
++.+...++++.+++..+...|+.++.++..+++++|.+.|+++ ++++++.+.. ..++++|++++..
T Consensus 318 ~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~------~~~~~~~~~~-------~~~~v~f~~~~~~ 384 (502)
T 3hbx_A 318 FSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKT------ERFNIVSKDE-------GVPLVAFSLKDSS 384 (502)
T ss_dssp CSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------TCEEECSCSS-------SSSEEEEEESSCS
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCEEEEeCCC-------CceEEEEEecCCC
Confidence 45555567888888888877788999999999999999999998 3699887622 2789999997532
Q ss_pred CCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHH
Q 010538 409 GSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDA 488 (508)
Q Consensus 409 ~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev 488 (508)
.++..++.+.|.++||.++........ .....+||+++..+|.+|+
T Consensus 385 --~~~~~~l~~~L~~~Gi~v~~~~~p~~~--------------------------------~~~~~lRisv~~~~t~edi 430 (502)
T 3hbx_A 385 --CHTEFEISDMLRRYGWIVPAYTMPPNA--------------------------------QHITVLRVVIREDFSRTLA 430 (502)
T ss_dssp --SCCHHHHHHHHHTTTCBCCEEECCTTC--------------------------------TTCEEEEEECCTTCCHHHH
T ss_pred --cCCHHHHHHHHHhCCcEEeeccCCccc--------------------------------CCceEEEEEeCCCCCHHHH
Confidence 244456899999999998652211110 1247899999999999999
Q ss_pred HHHHHhhhhhhhhhhh
Q 010538 489 KVNRCSSFDFVNFSQF 504 (508)
Q Consensus 489 ~~l~~~~~~~~~~~~~ 504 (508)
+++++.|++.++.++.
T Consensus 431 d~li~~L~~~l~~l~~ 446 (502)
T 3hbx_A 431 ERLVIDIEKVMRELDE 446 (502)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998876654
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=259.35 Aligned_cols=333 Identities=14% Similarity=0.104 Sum_probs=250.2
Q ss_pred chHHHHHHhhccCCCCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCC
Q 010538 25 SIDQIRATEFKRLENGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKD 103 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~ 103 (508)
.+..++. ++.. +++|+|+.+.... +++.+.+++.+ .......+| .....+++++++++++++++
T Consensus 21 ~~~~~~~-~~~~--~~~i~l~~~~~~~~~~~~v~~a~~~-~~~~~~~y~----------~~~~~~lr~~la~~~~~~~~- 85 (363)
T 3ffh_A 21 REEEVMA-ELGL--TKITKLSSNENPLGTSKKVAAIQAN-SSVETEIYP----------DGWASSLRKEVADFYQLEEE- 85 (363)
T ss_dssp HHHHHHH-TTTC--SCCEECSSCSCTTCCCHHHHHHHHT-CBSCCCBC--------------CHHHHHHHHHHHTCCGG-
T ss_pred CHHHHHH-hcCC--CceEEccCCCCCCCCCHHHHHHHHH-HHHHhhcCC----------CcchHHHHHHHHHHhCCChh-
Confidence 5667776 7764 6899999886554 46667666544 322211111 12357889999999999888
Q ss_pred ceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccch
Q 010538 104 YKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLP 183 (508)
Q Consensus 104 ~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~ 183 (508)
+|++|+|+|+|+++++.++ .++|++|+++...|+++. ..++..|++++.+|.+.+..+ |+
T Consensus 86 -~v~~~~g~t~a~~~~~~~~-~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~---------------d~ 145 (363)
T 3ffh_A 86 -ELIFTAGVDELIELLTRVL-LDTTTNTVMATPTFVQYR---QNALIEGAEVREIPLLQDGEH---------------DL 145 (363)
T ss_dssp -GEEEESSHHHHHHHHHHHH-CSTTCEEEEEESSCHHHH---HHHHHHTCEEEEEECCTTSCC---------------CH
T ss_pred -hEEEeCCHHHHHHHHHHHH-ccCCCEEEEcCCChHHHH---HHHHHcCCEEEEecCCCCCCc---------------CH
Confidence 8999999999999999998 688999999987666544 444556999999999865555 68
Q ss_pred hhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC---CCC
Q 010538 184 IQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ---PPD 260 (508)
Q Consensus 184 ~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~---~~d 260 (508)
++++ +++ ++++++|++++++||||.++|++++.++++. |++ |+++|+|++|+.... +..
T Consensus 146 ~~l~--~~i------~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~---------~~~-~~~li~De~~~~~~~~~~~~~ 207 (363)
T 3ffh_A 146 EGML--NAI------DEKTTIVWICNPNNPTGNYIELADIQAFLDR---------VPS-DVLVVLDEAYIEYVTPQPEKH 207 (363)
T ss_dssp HHHH--HHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHTT---------SCT-TSEEEEECTTGGGCSSCCCCC
T ss_pred HHHH--Hhc------ccCCCEEEEeCCCCCcCCCcCHHHHHHHHHh---------CCC-CcEEEEeCchHhhcCccccCH
Confidence 8888 554 4679999999999999999999999999995 555 999999999984221 111
Q ss_pred CC---CCCCcEEEEeccccccCCCcc--eEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhH
Q 010538 261 LS---KYPVDFVVMSFYKIFGYPTGL--GALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLS 335 (508)
Q Consensus 261 ~~---~~~~D~~~~S~~K~~g~P~G~--G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~ 335 (508)
+. ..+.++++.|++|++| ++|+ |++++++++++.+.+.. ..++++...
T Consensus 208 ~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~~~~~~~l~~~~--------------------------~~~~~~~~~ 260 (363)
T 3ffh_A 208 EKLVRTYKNLIITRTFSKIYG-LASARVGYGIADKEIIRQLNIVR--------------------------PPFNTTSIG 260 (363)
T ss_dssp GGGGGTCTTEEEEEESSSTTC-CSSCCCEEEEECHHHHHHHHHTC--------------------------CSCCCBHHH
T ss_pred HHHhhcCCCEEEEeechhhhc-CchhceeeeecCHHHHHHHHHhC--------------------------CCCCCCHHH
Confidence 11 2244588999999998 6675 99999988877665441 123466677
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHH
Q 010538 336 IASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYR 415 (508)
Q Consensus 336 ~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 415 (508)
.+++.++++.. ..++++++++.++++++.+.|++.. +++++.+. ++++++.++. +..
T Consensus 261 ~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~~------g~~~~~~~---------~~~~~~~~~~------~~~ 317 (363)
T 3ffh_A 261 QKLAIEAIKDQ--AFIGECRTSNANGIKQYEAFAKRFE------KVKLYPAN---------GNFVLIDLGI------EAG 317 (363)
T ss_dssp HHHHHHHHHCH--HHHHHHHHHHHHHHHHHHHHHHHCT------TCEECCCC---------SSEEEEECSS------CHH
T ss_pred HHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHhhCC------CceECCCC---------CeEEEEECCC------CHH
Confidence 77777777632 3468889999999999999999852 67776332 6788888864 234
Q ss_pred HHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhh
Q 010538 416 EVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSS 495 (508)
Q Consensus 416 ~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~ 495 (508)
++.+.|.++||.+++|..|.. ++++|+|++ |.+|+++++++|
T Consensus 318 ~~~~~l~~~gi~v~~g~~~~~-----------------------------------~~~iRis~~---~~~~i~~~~~~l 359 (363)
T 3ffh_A 318 TIFSYLEKNGYITRSGAALGF-----------------------------------PTAVRITIG---KEEDNSAVIALL 359 (363)
T ss_dssp HHHHHHHHTTEECEETTTTTC-----------------------------------TTEEEEECC---CHHHHHHHHHHH
T ss_pred HHHHHHHHCCeEEEeCccCCC-----------------------------------CCeEEEECC---CHHHHHHHHHHH
Confidence 588889899999999865421 578999998 999999999999
Q ss_pred hhh
Q 010538 496 FDF 498 (508)
Q Consensus 496 ~~~ 498 (508)
+++
T Consensus 360 ~~~ 362 (363)
T 3ffh_A 360 EKL 362 (363)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-30 Score=263.19 Aligned_cols=343 Identities=13% Similarity=0.111 Sum_probs=257.2
Q ss_pred HHHhcccCCCCCCCCchHHHHHHhhccCCCCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHH
Q 010538 10 LKEFGEDYGYPNAPKSIDQIRATEFKRLENGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRA 88 (508)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~r~~~f~~~~~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (508)
++++. +|.... ....++. .|.. ++.++|+.+... ++++.+++++.+.. ...+.++... ..+
T Consensus 8 ~~~~~-~~~~~~---~~~~~~~-~~~~--~~~i~l~~~~~~~~~~~~v~~a~~~~~-~~~~~y~~~~----------~~~ 69 (365)
T 3get_A 8 LNNLS-NYEPGK---DIEVIAK-EYGV--KEVIKLASNENPFGTPPKAIECLRQNA-NKAHLYPDDS----------MIE 69 (365)
T ss_dssp GGGSC-CCCCCC---CHHHHHH-HTTC--SCCEECSSCCCTTCSCHHHHHHHHHHG-GGTTSCCCTT----------CHH
T ss_pred HhhcC-CCCCCC---CHHHHHH-hcCC--CceEEecCCCCCCCCCHHHHHHHHHHH-HhhccCCCCC----------hHH
Confidence 34444 365555 6777777 7765 689999987544 35777877775543 3332322211 146
Q ss_pred HHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEcc-CCccCcc
Q 010538 89 AREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDV-EEAVDND 167 (508)
Q Consensus 89 ~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~-~~~~~~~ 167 (508)
+|+++|+++|++++ +|++|+|+|+|+++++.++ .++|++|+++...|+++.. .++..|.+++.+|+ +.+. +
T Consensus 70 lr~~la~~~~~~~~--~v~~~~g~~~a~~~~~~~l-~~~gd~vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~-~- 141 (365)
T 3get_A 70 LKSTLAQKYKVQNE--NIIIGAGSDQVIEFAIHSK-LNSKNAFLQAGVTFAMYEI---YAKQCGAKCYKTQSITHNL-D- 141 (365)
T ss_dssp HHHHHHHHHTCCGG--GEEEESSHHHHHHHHHHHH-CCTTCEEEECSSCCTHHHH---HHHHHTCEEEECSSSSCCH-H-
T ss_pred HHHHHHHHhCCCcc--eEEECCCHHHHHHHHHHHH-hCCCCEEEEeCCChHHHHH---HHHHcCCEEEEEecCCCCC-C-
Confidence 79999999999888 8999999999999999998 6889999998877765544 44456999999998 4444 5
Q ss_pred ccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEE
Q 010538 168 GLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVL 247 (508)
Q Consensus 168 ~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vi 247 (508)
|+++++ +++ ++++++|++++++||||.++|++++.++++ +|+ +|+++|
T Consensus 142 --------------d~~~l~--~~l------~~~~~~v~~~~p~nptG~~~~~~~l~~l~~---------~~~-~~~~li 189 (365)
T 3get_A 142 --------------EFKKLY--ETH------KDEIKLIFLCLPNNPLGECLDASEATEFIK---------GVN-EDCLVV 189 (365)
T ss_dssp --------------HHHHHH--HHT------TTTEEEEEEESSCTTTCCCCCHHHHHHHHH---------TSC-TTSEEE
T ss_pred --------------CHHHHH--HHh------CCCCCEEEEcCCCCCCCCCcCHHHHHHHHH---------hCC-CCcEEE
Confidence 688888 554 468999999999999999999999999999 453 699999
Q ss_pred Eecccc------CCCCCCCCC----CCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhh
Q 010538 248 IDAAKG------CVTQPPDLS----KYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDF 315 (508)
Q Consensus 248 vD~a~~------~g~~~~d~~----~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~ 315 (508)
+|++|+ .+..+.+.. ..+.++++.|+||++| ++| +|++++++++++.+.....
T Consensus 190 ~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~~-------------- 254 (365)
T 3get_A 190 IDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYG-LGGLRIGYGIANANIISAFYKLRA-------------- 254 (365)
T ss_dssp EECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTS-CTTTCCEEEEECHHHHHHHHHHSC--------------
T ss_pred EeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhc-CcchheEEEEcCHHHHHHHHHhcC--------------
Confidence 999998 443334432 2256799999999998 445 8999998888776554311
Q ss_pred hhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCC
Q 010538 316 VKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHD 395 (508)
Q Consensus 316 ~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~ 395 (508)
..+++....+++.++++.. ..++++++++.++++++.+.|+++ +++++.+.
T Consensus 255 ------------~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~-------g~~~~~~~-------- 305 (365)
T 3get_A 255 ------------PFNVSNLALKAAVAAMDDD--EFTEKTLENNFSQMELYKEFAKKH-------NIKIIDSY-------- 305 (365)
T ss_dssp ------------TTCSCHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHHHHHHT-------TCEECCCS--------
T ss_pred ------------CCCcCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHhC-------CCEECCCC--------
Confidence 1235666677777777632 347888999999999999999887 57765432
Q ss_pred CCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceE
Q 010538 396 TGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAI 475 (508)
Q Consensus 396 ~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i 475 (508)
++++++.+++. +..++.+.|.++||.+++|..|. ++++
T Consensus 306 -~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~g~~~~------------------------------------~~~i 343 (365)
T 3get_A 306 -TNFITYFFDEK-----NSTDLSEKLLKKGIIIRNLKSYG------------------------------------LNAI 343 (365)
T ss_dssp -SSEEEEECSSS-----CHHHHHHHHHTTTEECEECGGGT------------------------------------CSEE
T ss_pred -CeEEEEECCCC-----CHHHHHHHHHHCCEEEEECccCC------------------------------------CCEE
Confidence 67788888653 23468889989999999876432 3789
Q ss_pred EEecCCCCCHHHHHHHHHhhhhhh
Q 010538 476 RVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 476 Ris~~~~~t~eev~~l~~~~~~~~ 499 (508)
|+|++ |.+|++++++.|++++
T Consensus 344 Ris~~---~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 344 RITIG---TSYENEKFFTEFDKIL 364 (365)
T ss_dssp EEECC---CHHHHHHHHHHHHHHH
T ss_pred EEEcC---CHHHHHHHHHHHHHHh
Confidence 99998 9999999999998865
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=273.86 Aligned_cols=370 Identities=13% Similarity=0.083 Sum_probs=254.0
Q ss_pred CchHHHHHHhhccCC-CC---CeeeeCCCC-CCCCHHHHHHHH--HHhhccccCCCCCccchhhhhhHHHHHHHHHHHHH
Q 010538 24 KSIDQIRATEFKRLE-NG---TVYLDHAGA-TLYSELQMEAIF--RDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDY 96 (508)
Q Consensus 24 ~~~~~~r~~~f~~~~-~~---~iyld~~~~-~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~ 96 (508)
.+...+++ +|+.+. ++ .+++.+++. ....|.+++++. ..+...+ +|... ..+....+..++++++++++
T Consensus 45 ~~~~~~~~-~~~~l~~~~~~~~~~~~~~g~~~~~~p~~v~~~~~~~~~~~~~--~~~~~-~~~~g~~~~~~~~~~~la~~ 120 (438)
T 1wyu_A 45 LPEWKVLE-ELRRLAAQNLPAHKAFLGGGVRSHHVPPVVQALAARGEFLTAY--TPYQP-EVSQGVLQATFEYQTMIAEL 120 (438)
T ss_dssp CCHHHHHH-HHHHHHHTSCCCTTCCCCSSCCCCCCCHHHHHHHTSHHHHHCC--SCCSG-GGCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHH-HHHHHHhcCcCccccccCCCccCCcCcHHHHHHHhcchhhhcC--CCCcc-hhhhhHHHHHHHHHHHHHHH
Confidence 45667888 888763 22 333443433 122334545554 2332221 23211 12344667889999999999
Q ss_pred cCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEEccCCccCcccccccccc
Q 010538 97 FNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDVEEAVDNDGLSESLVT 175 (508)
Q Consensus 97 ~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~~~~~~~~~l~~~~~~ 175 (508)
+|++++ ++++++|+|.+++.+..++.+.+|++|+++...|+++...++ +++..|++++.+|.+ ++.+
T Consensus 121 ~g~~~~--~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~~-~~~~--------- 188 (438)
T 1wyu_A 121 AGLEIA--NASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLE-GGRT--------- 188 (438)
T ss_dssp HTSSEE--CSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCB-TTBC---------
T ss_pred hCCCcc--ceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcCc-CCcc---------
Confidence 999877 789999999544444443334678999999999999876554 456689999999873 3333
Q ss_pred ccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEecc-ccC
Q 010538 176 STKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAA-KGC 254 (508)
Q Consensus 176 ~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a-~~~ 254 (508)
|+ + + ++++|++|+++++ |+||.+.|+++|.++|++ +|+++++|.. ++.
T Consensus 189 ------d~---~--~-------i~~~t~~v~i~~p-n~tG~~~~l~~i~~la~~------------~g~~vivd~d~~a~ 237 (438)
T 1wyu_A 189 ------PL---P--E-------VGEEVGAVVVQNP-NFLGALEDLGPFAEAAHG------------AGALFVAVADPLSL 237 (438)
T ss_dssp ------CC---C--C-------CCTTEEEEEEESS-CTTSBCCCHHHHHHHHHH------------TTCEEEEECCTTGG
T ss_pred ------CH---H--H-------hCCCeEEEEEECC-CCCeEEecHHHHHHHHHH------------cCCEEEEEechhhc
Confidence 11 2 1 2467999999998 999999999999999998 8999998865 666
Q ss_pred CCCCCCCCCCCCcEEEEeccc-----cccCCCcceEEEEechhHhhhccccccCceEEecccchhhhh--hccCcccccc
Q 010538 255 VTQPPDLSKYPVDFVVMSFYK-----IFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVK--RRQGVEELFE 327 (508)
Q Consensus 255 g~~~~d~~~~~~D~~~~S~~K-----~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~ 327 (508)
|..+.+ .++++|++++|+|| |++|| |+|++++++++++.+.+...|+. .. ......|.. .......+++
T Consensus 238 g~~~~~-~~~g~D~~~~s~kk~~~~~~~~Gp-~~G~l~~~~~~~~~l~~~~~g~~-~~-~~~~~~~~~~l~~~~~~~r~~ 313 (438)
T 1wyu_A 238 GVLKPP-GAYGADIAVGDGQSLGLPMGFGGP-HFGFLATKKAFVRQLPGRLVSET-VD-VEGRRGFILTLQAREQYIRRA 313 (438)
T ss_dssp GTBCCH-HHHTCSEEEEECTTTTCCCGGGCS-CCEEEEECGGGGGGCCSCCEEEE-EB-TTSCEEEEECCGGGSHHHHGG
T ss_pred cCcCCC-ccCCCCEEEECCcccCCCccCCCC-CeeEEEEcHHHHHhCCCceeccc-cc-cCCCcceeeeccccccccchh
Confidence 654443 45689999999887 66678 89999999998776654433321 10 000000100 0001123456
Q ss_pred CCCCCh---hHHHHHHHH--HHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEE
Q 010538 328 DGTASF---LSIASIRHG--FNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSF 402 (508)
Q Consensus 328 ~gt~~~---~~~~~l~~a--l~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 402 (508)
.+|+|+ ..++++.++ +..+...|++++.+++.++++++.+.|+++ +|++++.+... ..++.+
T Consensus 314 ~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~------~g~~~~~~~~~-------~~~~~~ 380 (438)
T 1wyu_A 314 KAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEV------PGVRPFTPKPF-------FNEFAL 380 (438)
T ss_dssp GSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS------TTCEECSCSSB-------CSEEEE
T ss_pred cccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcC------CCeEECCCCCe-------EEEEEE
Confidence 678877 566676666 776666678999999999999999999987 37888765321 344555
Q ss_pred EeeCCCCCccCHHHHHHHHhhCCCee--ccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecC
Q 010538 403 NLKRPDGSWFGYREVEKLASLSGIQL--RTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFG 480 (508)
Q Consensus 403 ~~~~~~~~~~~~~~l~~~L~~~gI~v--~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~ 480 (508)
.++ .+..++.+.|.++||.+ +++..| .++++|||++
T Consensus 381 ~~~------~~~~~~~~~L~~~gi~v~~~~~~~~------------------------------------~~~~lRis~~ 418 (438)
T 1wyu_A 381 ALP------KDPEAVRRALAERGFHGATPVPREY------------------------------------GENLALFAAT 418 (438)
T ss_dssp ECS------SCHHHHHHHHHHTTCCCCEECCTTS------------------------------------CSSEEEEECC
T ss_pred eCC------CCHHHHHHHHHHCCceecccccccc------------------------------------CCCeEEEEec
Confidence 542 23456888998999998 555432 1578999999
Q ss_pred CCCCHHHHHHHHHhhhhhh
Q 010538 481 YMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 481 ~~~t~eev~~l~~~~~~~~ 499 (508)
.++|.+|++++++.|++++
T Consensus 419 ~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 419 ELHEEEDLLALREALKEVL 437 (438)
T ss_dssp TTCCHHHHHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHHHHHh
Confidence 9999999999999998764
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=279.94 Aligned_cols=364 Identities=13% Similarity=0.060 Sum_probs=246.6
Q ss_pred CCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCC-ccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHH
Q 010538 40 GTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHS-QSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKL 118 (508)
Q Consensus 40 ~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~ 118 (508)
...||++..++..++.++.+++..+ .|++. .+..+....++.+++++++++++|++++ +++||+|+|+|+.+
T Consensus 108 ~p~~~~~~~~~~~~~~~~~~~l~~~-----~n~~~~~~~~s~~~~~le~~~~~~la~l~g~~~~--~~~~t~ggtea~~~ 180 (515)
T 2jis_A 108 HPRFFNQLFSGLDPHALAGRIITES-----LNTSQYTYEIAPVFVLMEEEVLRKLRALVGWSSG--DGIFCPGGSISNMY 180 (515)
T ss_dssp STTEESSSCCCCCHHHHHHHHHHHH-----HCCCTTCTTTCHHHHHHHHHHHHHHHHHHTCSSC--EEEEESSHHHHHHH
T ss_pred CCCeEEEeeCCCCHHHHHHHHHHHH-----hccCCCchhhchHHHHHHHHHHHHHHHHhCCCCC--CeEEcCCcHHHHHH
Confidence 5679999988876655555444332 24443 3444555677888899999999999877 89999999999888
Q ss_pred HHhhcCC------C-CCC------eEEEecccccchHHHHHHHHhcCC---eEEEEccCCccCccccccccccccccccc
Q 010538 119 VGEAFPW------S-HQS------SYMYTMENHNSVLGIREYALSQGA---AAFAIDVEEAVDNDGLSESLVTSTKISLL 182 (508)
Q Consensus 119 ~~~~l~~------~-~g~------~vl~~~~~h~s~~~~~~~~~~~G~---~v~~v~~~~~~~~~~l~~~~~~~~~~~~d 182 (508)
++.++.. + +|+ +|+++...|+++....+.+ |. +++.||.+.++.+ |
T Consensus 181 al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~---g~g~~~v~~v~~~~~~~~---------------d 242 (515)
T 2jis_A 181 AVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFL---GLGTDSVRVVKADERGKM---------------V 242 (515)
T ss_dssp HHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHT---TSCGGGEEEECBCTTSCB---------------C
T ss_pred HHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHHc---CCCCCcEEEEecCCCCcC---------------C
Confidence 8777521 1 354 8999999999988665544 55 8999998766666 5
Q ss_pred hhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCC--
Q 010538 183 PIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPD-- 260 (508)
Q Consensus 183 ~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d-- 260 (508)
+++++ ++|++....+.+|++|++++++|+||.+.|+++|.++|++ +|+++|+|++++.+..+.+
T Consensus 243 ~~~L~--~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~------------~g~~l~vD~a~~~~~~~~~~~ 308 (515)
T 2jis_A 243 PEDLE--RQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQR------------HGLWLHVDAAWGGSVLLSQTH 308 (515)
T ss_dssp HHHHH--HHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH------------HTCEEEEEETTGGGGGGCTTT
T ss_pred HHHHH--HHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHH------------cCCeEEEehhhhhHHHhChhh
Confidence 77887 5553211112358999999999999999999999999998 8999999999998887665
Q ss_pred ---CCCC-CCcEEEEeccccccCCCcceEEEEech--hHhhh----ccccccCceEEecccchhhhhhccCccccccCCC
Q 010538 261 ---LSKY-PVDFVVMSFYKIFGYPTGLGALIMRND--AAKLL----KNTYFSGGTVAASIADIDFVKRRQGVEELFEDGT 330 (508)
Q Consensus 261 ---~~~~-~~D~~~~S~~K~~g~P~G~G~l~~~~~--~~~~l----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt 330 (508)
+... ++|++++|+|||+++|.|+|+++++++ +++.. .+.+.++.... ...+. ........+.
T Consensus 309 ~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~----~~~~~----~~~~~~~~~r 380 (515)
T 2jis_A 309 RHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFY----DVALD----TGDKVVQCGR 380 (515)
T ss_dssp GGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCS----CGGGC----CGGGCSCSSC
T ss_pred HhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcccc----cccCC----CCCCCCCCCC
Confidence 4444 789999999999888999999999987 55542 22222221100 00000 0000001111
Q ss_pred CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCC---
Q 010538 331 ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRP--- 407 (508)
Q Consensus 331 ~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--- 407 (508)
. . ....++++++.+...|++++.+++.++++++.+.|+++ ++++++.++. .+.++|+....
T Consensus 381 r-~-~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~------~g~~~~~~~~--------~~~v~f~~~p~~~~ 444 (515)
T 2jis_A 381 R-V-DCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKR------EGFELVMEPE--------FVNVCFWFVPPSLR 444 (515)
T ss_dssp C-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS------TTEEESSCCS--------SSEEEEEECCGGGT
T ss_pred c-c-cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC------CCEEEeCCCC--------eeEEEEEEeCcccc
Confidence 0 0 12344455665666678999999999999999999987 4799987643 46677876311
Q ss_pred ---CCCccCH------HHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEe
Q 010538 408 ---DGSWFGY------REVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVS 478 (508)
Q Consensus 408 ---~~~~~~~------~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis 478 (508)
+...+.. ..+.+.|.+.|+...... .. ....+++|++
T Consensus 445 ~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~---~~-------------------------------~~~~~~lRis 490 (515)
T 2jis_A 445 GKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQ---PH-------------------------------GTRGNFFRVV 490 (515)
T ss_dssp TCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEE---EE-------------------------------TTEEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEE---EE-------------------------------CCceEEEEEE
Confidence 1111100 114455666675532100 00 0014689999
Q ss_pred c-CCCCCHHHHHHHHHhhhhhhh
Q 010538 479 F-GYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 479 ~-~~~~t~eev~~l~~~~~~~~~ 500 (508)
+ +.++|.+||+++++.|+++.+
T Consensus 491 ~~~~~~t~edid~~~~~l~~~~~ 513 (515)
T 2jis_A 491 VANSALTCADMDFLLNELERLGQ 513 (515)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHT
T ss_pred eCCCCCCHHHHHHHHHHHHHHHh
Confidence 9 899999999999999987764
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=261.81 Aligned_cols=343 Identities=13% Similarity=0.054 Sum_probs=245.0
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCC-CCceEEE-cCChHHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASM-KDYKCIF-TSGATAAL 116 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~-~~~~i~~-t~g~t~al 116 (508)
.+.+|+.+++.+++|+.+++++.+ .... ... ....+....+..+++++++++++|++. + +|++ |+|+|+|+
T Consensus 38 ~~~~~~~~~~~~~~~~~v~~a~~~-~~~~---~~~-~~~~~~~~~~~~~~~~~~la~~~g~~~~~--~i~~~t~g~t~al 110 (398)
T 2fyf_A 38 KPRDGRFGSGPSKVRLEQLQTLTT-TAAA---LFG-TSHRQAPVKNLVGRVRSGLAELFSLPDGY--EVILGNGGATAFW 110 (398)
T ss_dssp SCSSCBCCSSSCCCCHHHHHGGGT-TTTT---TTT-SCTTSHHHHHHHHHHHHHHHHHTTCCTTC--EEEEEETCHHHHH
T ss_pred ccCCccccCCCCCCCHHHHHHHhh-cCCC---ccC-cCcCCHHHHHHHHHHHHHHHHHhCCCCCc--eEEEeCCchhHHH
Confidence 345677778888889988887644 1000 011 001123345678899999999999974 5 8998 99999999
Q ss_pred HHHHhhcCCCCCCeEEEecccccchHHHHHHHHhc--CCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCC
Q 010538 117 KLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQ--GAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 117 ~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~--G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
++++.++ .++| .++++..+|... +...+... |.+++.+|.+ ++... . ..
T Consensus 111 ~~~~~~l-~~~g-v~~v~~~~~~~~--~~~~~~~~~~g~~~~~v~~~-~g~~~-------------------~--~~--- 161 (398)
T 2fyf_A 111 DAAAFGL-IDKR-SLHLTYGEFSAK--FASAVSKNPFVGEPIIITSD-PGSAP-------------------E--PQ--- 161 (398)
T ss_dssp HHHHHHT-CSSC-EEEEECSHHHHH--HHHHHHHCTTSCCCEEEECC-TTCCC-------------------C--CC---
T ss_pred HHHHHHh-cCCC-eEEEeCCHHHHH--HHHHHHHhCCCCceEEEecC-CCCCC-------------------C--cc---
Confidence 9999998 5666 333355445321 22234444 7888888886 33221 1 11
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEecc
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFY 274 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~ 274 (508)
.+++|++|++++++|+||.++|+++|.++ +|+++|+|++|+.+..++++. ++|++++|+|
T Consensus 162 ---i~~~~~~v~~~~~~nptG~~~~~~~i~~~---------------~~~~vivD~a~~~~~~~~~~~--~~di~~~s~s 221 (398)
T 2fyf_A 162 ---TDPSVDVIAWAHNETSTGVAVAVRRPEGS---------------DDALVVIDATSGAGGLPVDIA--ETDAYYFAPQ 221 (398)
T ss_dssp ---CCTTCSEEEEESEETTTTEECCCCCCTTC---------------C-CEEEEECTTTTTTSCCCGG--GCSEEEECTT
T ss_pred ---ccCCCCEEEEeCcCCCcceecchHHhhhh---------------cCCeEEEEeccccCCcccCcc--cCcEEEEecC
Confidence 24678999999999999999999887643 599999999999999888765 3899999999
Q ss_pred ccccCCCcceEEEEechhHhhhccc---------cccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHH
Q 010538 275 KIFGYPTGLGALIMRNDAAKLLKNT---------YFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNL 345 (508)
Q Consensus 275 K~~g~P~G~G~l~~~~~~~~~l~~~---------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~ 345 (508)
|++|.|.|+|+++++++.++.++.. +..++. ... ........++++...++++.+++++
T Consensus 222 K~~~~~gg~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------~~~---~~~~~~~~~t~~~~~~~a~~~al~~ 289 (398)
T 2fyf_A 222 KNFASDGGLWLAIMSPAALSRIEAIAATGRWVPDFLSLPI---------AVE---NSLKNQTYNTPAIATLALLAEQIDW 289 (398)
T ss_dssp STTCSCSSEEEEEECHHHHHHHHHHHHTTCCCCGGGCHHH---------HHH---HHTTTCCSSCCCHHHHHHHHHHHHH
T ss_pred cccCCCCceEEEEECHHHHHHhhcccccCCCCCcEEehHH---------Hhh---hcccCCCCCCCCHHHHHHHHHHHHH
Confidence 9999444699999999987766421 111110 000 0001234578899889999999998
Q ss_pred HHhcC-hHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecC-CCCCcccCCCCc-eEEEEeeCCCCCccCHHHHHHHHh
Q 010538 346 INSLT-VPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGT-YTSEVSYHDTGS-MVSFNLKRPDGSWFGYREVEKLAS 422 (508)
Q Consensus 346 ~~~~g-~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~l~~~L~ 422 (508)
+.+.| ++++.++.+++++++.+.|+++ ++++++.+ +.. +++ +++|+++.. ++..++.+.|.
T Consensus 290 ~~~~g~~~~~~~~~~~~~~~l~~~L~~~------~g~~~~~~~~~~------~~~~~~~~~~~~~----~~~~~l~~~L~ 353 (398)
T 2fyf_A 290 LVGNGGLDWAVKRTADSSQRLYSWAQER------PYTTPFVTDPGL------RSQVVGTIDFVDD----VDAGTVAKILR 353 (398)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHHHHHHS------TTEEESCCSGGG------BCSSEEEEEECTT----SCHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHHHHHHHHc------CCceeccCChhh------cCCcEEEEECCCC----CCHHHHHHHHH
Confidence 77766 8999999999999999999987 36888752 211 144 899998532 34456889998
Q ss_pred hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 423 LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 423 ~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
++||.+++|.. . ..++++|||++.++|.+|+++++++|+++++
T Consensus 354 ~~gI~v~~g~~---~--------------------------------~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~ 396 (398)
T 2fyf_A 354 ANGIVDTEPYR---K--------------------------------LGRNQLRVAMFPAVEPDDVSALTECVDWVVE 396 (398)
T ss_dssp HTTCBCCSCCT---T--------------------------------TCSSEEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred HCCcEEecCcc---c--------------------------------CCCCEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 89999987621 0 1147899999999999999999999988764
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-31 Score=272.03 Aligned_cols=369 Identities=13% Similarity=0.068 Sum_probs=252.7
Q ss_pred HHHHHHhcccCCCCCCCCchHHHHHHhhccCCC------C---CeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCcc
Q 010538 7 EEFLKEFGEDYGYPNAPKSIDQIRATEFKRLEN------G---TVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQS 76 (508)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~r~~~f~~~~~------~---~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~ 76 (508)
.+-+++-+ .|.... +++.+|. +||.+.. + +.|+++...+ .++|.+.+++.+.+ .....+++. +
T Consensus 11 ~~~~~~~~-~~~~~~---~~~~~~~-~fp~~~~~~~~~~g~~~i~~~~~~~~~~~~~p~v~~a~~~~~-~~~~~~~~~-~ 83 (401)
T 2bwn_A 11 IQKLHDEG-RYRTFI---DIEREKG-AFPKAQWNRPDGGKQDITVWCGNDYLGMGQHPVVLAAMHEAL-EAVGAGSGG-T 83 (401)
T ss_dssp HHHHHHTT-CCCCCC---EEEECTT-STTEEEEECTTSCEEEEEECSCSCTTSGGGCHHHHHHHHHHH-HHHCSCCCS-B
T ss_pred HHHHHhcC-Cceehh---hhhcccc-cccceecccccCCCCcEEEeeCCCcccCCCCHHHHHHHHHHH-HHcCCCCCC-c
Confidence 33344433 244444 6778898 9998731 1 3456554433 24677877765543 333333331 2
Q ss_pred chhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcC-CCCCCeEEEecccccchHHHHHHHHhcCCeE
Q 010538 77 DISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFP-WSHQSSYMYTMENHNSVLGIREYALSQGAAA 155 (508)
Q Consensus 77 ~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~-~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v 155 (508)
...+......+++++.+|+++|.+ + +|++|+|++ ++..++..+. ..+|++|+++...|+++...+ +..|+++
T Consensus 84 ~~~~~~~~~~~~l~~~la~~~~~~-~--~i~~~sG~~-a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~---~~~g~~~ 156 (401)
T 2bwn_A 84 RNISGTTAYHRRLEAEIAGLHQKE-A--ALVFSSAYN-ANDATLSTLRVLFPGLIIYSDSLNHASMIEGI---KRNAGPK 156 (401)
T ss_dssp TTTBCCBHHHHHHHHHHHHHTTCS-E--EEEESCHHH-HHHHHHHHHHHHSTTCEEEEETTCCHHHHHHH---HHSCCCE
T ss_pred CcccCChHHHHHHHHHHHHHhCCC-c--EEEECCcHH-HHHHHHHHHhcCCCCCEEEECchhhHHHHHHH---HHcCCeE
Confidence 222223456788999999999974 4 788888877 6666665542 357899999999998876554 4469999
Q ss_pred EEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccc
Q 010538 156 FAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILE 235 (508)
Q Consensus 156 ~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~ 235 (508)
+.+|.+ + +++++ +.+.+ ...+++++|++++++||||.++|+++|.++|++
T Consensus 157 ~~v~~~---d-----------------~~~le--~~l~~--~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~------ 206 (401)
T 2bwn_A 157 RIFRHN---D-----------------VAHLR--ELIAA--DDPAAPKLIAFESVYSMDGDFGPIKEICDIAEE------ 206 (401)
T ss_dssp EEECTT---C-----------------HHHHH--HHHHH--SCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHH------
T ss_pred EEEcCC---C-----------------HHHHH--HHHHh--hccCCceEEEEecCcCCCCCcCCHHHHHHHHHH------
Confidence 999875 1 23333 22211 011478999999999999999999999999998
Q ss_pred cCCCCCCCeEEEEeccccCCCCCCC---C---CCC--CCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEE
Q 010538 236 ISPFSKGRWMVLIDAAKGCVTQPPD---L---SKY--PVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVA 307 (508)
Q Consensus 236 ~~~~~~~g~~vivD~a~~~g~~~~d---~---~~~--~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~ 307 (508)
+|+++|+|++|+.|..... + ... +.|+++.|++|+++ ..| |+++.++++.+.+....
T Consensus 207 ------~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~-~~G-G~~~~~~~~~~~l~~~~------- 271 (401)
T 2bwn_A 207 ------FGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYG-VFG-GYIAASARMVDAVRSYA------- 271 (401)
T ss_dssp ------HTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTC-SCC-EEEEECHHHHHHHHHHC-------
T ss_pred ------cCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhcc-CCC-CEEecCHHHHHHHHHhC-------
Confidence 8999999999996532111 1 011 35899999999999 456 99999887766544220
Q ss_pred ecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCC
Q 010538 308 ASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTY 387 (508)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~ 387 (508)
....+..++++ ..++++.++++++.+.|++++.+++.++++++.+.|+++ +++++.+.
T Consensus 272 --------------~~~~~~~~~~~-~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~ 329 (401)
T 2bwn_A 272 --------------PGFIFSTSLPP-AIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-------GMPIIDHG 329 (401)
T ss_dssp --------------HHHHTSBCCCH-HHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-------TCCBCCCS
T ss_pred --------------cCceecCCCCH-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC-------CCcccCCC
Confidence 01223345555 667778889998877677899999999999999999886 45555432
Q ss_pred CCCcccCCCCceEEEEeeCCCCCccCHHHHHHHH-hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccc
Q 010538 388 TSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLA-SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDI 466 (508)
Q Consensus 388 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L-~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 466 (508)
++++++.+++. .+..++.+.| +++||.++++..+..+.
T Consensus 330 ---------~~~~~~~~~~~----~~~~~~~~~L~~~~gi~v~~~~~~~~~~---------------------------- 368 (401)
T 2bwn_A 330 ---------SHIVPVVIGDP----VHTKAVSDMLLSDYGVYVQPINFPTVPR---------------------------- 368 (401)
T ss_dssp ---------SSCEEEECCCH----HHHHHHHHHHHHHHCEECCEECTTTSCT----------------------------
T ss_pred ---------CCeEEEEeCCh----HHHHHHHHHHHhcCCEEEeecCCCCCCC----------------------------
Confidence 56888887531 2234577777 48899998865322110
Q ss_pred cCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 467 IHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 467 ~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
..+++|+|++.++|.+|+++++++|+++++.
T Consensus 369 ----~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~ 399 (401)
T 2bwn_A 369 ----GTERLRFTPSPVHDLKQIDGLVHAMDLLWAR 399 (401)
T ss_dssp ----TCCEEEECCCTTSCHHHHHHHHHHHHHHC--
T ss_pred ----CCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Confidence 1368999999999999999999999987654
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=255.65 Aligned_cols=325 Identities=12% Similarity=0.098 Sum_probs=245.2
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHH
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALK 117 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~ 117 (508)
++.++|+.+.... +++.+++++.+.+ .... .|+ .....+++++++++++++++ +|++|+|+|+|++
T Consensus 16 ~~~i~l~~~~~~~~~~~~v~~a~~~~~-~~~~-----~y~-----~~~~~~l~~~la~~~~~~~~--~i~~~~g~~~a~~ 82 (354)
T 3ly1_A 16 DNPIRINFNENPLGMSPKAQAAARDAV-VKAN-----RYA-----KNEILMLGNKLAAHHQVEAP--SILLTAGSSEGIR 82 (354)
T ss_dssp SSCEECSSCCCSSCCCHHHHHHHHHTG-GGTT-----SCC-----HHHHHHHHHHHHHHTTSCGG--GEEEESHHHHHHH
T ss_pred CceEEccCCCCCCCCCHHHHHHHHHHH-hhCc-----CCC-----CCchHHHHHHHHHHhCCChH--HEEEeCChHHHHH
Confidence 6788998876544 5677777765533 3221 121 22467899999999999888 8999999999999
Q ss_pred HHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCC
Q 010538 118 LVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP 197 (508)
Q Consensus 118 ~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~ 197 (508)
+++.++ .++|++|+++...|+++. ..++..|.+++.+|.+.+..+ |+++++ +++++
T Consensus 83 ~~~~~l-~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~---------------d~~~l~--~~l~~--- 138 (354)
T 3ly1_A 83 AAIEAY-ASLEAQLVIPELTYGDGE---HFAKIAGMKVTKVKMLDNWAF---------------DIEGLK--AAVAA--- 138 (354)
T ss_dssp HHHHHH-CCTTCEEEEESSSCTHHH---HHHHHTTCEEEEECCCTTSCC---------------CHHHHH--HHHHT---
T ss_pred HHHHHH-hCCCCeEEECCCCchHHH---HHHHHcCCEEEEecCCCCCCC---------------CHHHHH--HHhcc---
Confidence 999998 678999999887777654 445567999999998865555 678888 55521
Q ss_pred CCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCC---CC----CCC-CCcEE
Q 010538 198 AGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPP---DL----SKY-PVDFV 269 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~---d~----~~~-~~D~~ 269 (508)
.+++++|++++++||||.++|.+++.++++ +| ++|+++|+|++|+.....- .. ... +.+++
T Consensus 139 -~~~~~~v~l~~p~nptG~~~~~~~l~~l~~---------~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~ 207 (354)
T 3ly1_A 139 -YSGPSIVYLVNPNNPTGTITPADVIEPWIA---------SK-PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIIL 207 (354)
T ss_dssp -CSSCEEEEEESSCTTTCCCCCHHHHHHHHH---------TC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEE
T ss_pred -CCCCCEEEEeCCCCCcCCCcCHHHHHHHHH---------hC-CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEE
Confidence 167899999999999999999999999999 46 6899999999998533221 11 122 56699
Q ss_pred EEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH
Q 010538 270 VMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN 347 (508)
Q Consensus 270 ~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~ 347 (508)
+.|+||++| ++| +|++++++++++.+.... ..++++....+++.++++..
T Consensus 208 ~~s~sK~~g-~~G~r~G~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~a~~~~l~~~- 259 (354)
T 3ly1_A 208 LKTFSKIHA-MAGMRVGYAVAHPTVIALMGRYV--------------------------AGEKINFSGVDAALASMNDS- 259 (354)
T ss_dssp EEESSSTTC-CGGGCCEEEECCHHHHHHHGGGT--------------------------TCSCCCHHHHHHHHHHTTCH-
T ss_pred EeeChhhcc-ChhhhheeeecCHHHHHHHHHhc--------------------------CCCCCCHHHHHHHHHHhcCH-
Confidence 999999998 545 799999988877665441 11456667777777776643
Q ss_pred hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCe
Q 010538 348 SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQ 427 (508)
Q Consensus 348 ~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~ 427 (508)
..++.+++++.++++++.+.|+++ +++++.+ . ++++++.+++ +..++.+.|.++||.
T Consensus 260 -~~~~~~~~~~~~~~~~l~~~l~~~-------~~~~~~~-~--------~~~~~~~~~~------~~~~~~~~l~~~gi~ 316 (354)
T 3ly1_A 260 -AFITYSKKSNDVSRQILLKALEDL-------KLPYLPS-E--------GNFVFHQLVV------PLKDYQTHMADAGVL 316 (354)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHH-------TCCBCCC-C--------SSEEEEECSS------CHHHHHHHHHHTTEE
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHC-------CCeECCC-C--------ceEEEEECCC------CHHHHHHHHHHCCEE
Confidence 236888999999999999999886 4555422 2 6788888864 234588889899999
Q ss_pred eccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 428 LRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 428 v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
++ |.+|. .++++|||++ |.+|++++++.|+++++-
T Consensus 317 v~-g~~~~-----------------------------------~~~~iRis~~---~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 317 IG-RAFPP-----------------------------------ADNWCRISLG---TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp CC-CCCTT-----------------------------------CTTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred Ee-ecCCC-----------------------------------CCCEEEEEcC---CHHHHHHHHHHHHHHHHh
Confidence 98 76442 1578999987 899999999999988764
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-30 Score=273.84 Aligned_cols=367 Identities=13% Similarity=0.072 Sum_probs=250.3
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCC-CCceEEEcCChHHHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASM-KDYKCIFTSGATAALK 117 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~-~~~~i~~t~g~t~al~ 117 (508)
....|||+..+++.++.+++++..... + .+.. .+..+.....+.+++++++++++|+++ + +++||+|+|+|++
T Consensus 99 ~~~~yl~~~~~~~~~~~v~~~~~~~~~-n--~~~~-~~~~~~~~~~le~~~~~~la~~~g~~~~~--~~~~t~ggt~a~~ 172 (497)
T 2qma_A 99 QHPDCIAHLHTPPLMPAVAAEAMIAAL-N--QSMD-SWDQASSATYVEQKVVNWLCDKYDLSEKA--DGIFTSGGTQSNQ 172 (497)
T ss_dssp TSTTBCSSSCCCCBHHHHHHHHHHHHH-C--CCTT-CGGGCHHHHHHHHHHHHHHHHHTTCCTTC--EEEEESSHHHHHH
T ss_pred CCCCeeEeCCCCCcHHHHHHHHHHHhh-c--cccc-chhhChHHHHHHHHHHHHHHHHhCCCCCC--CeEEcCCchHHHH
Confidence 456899999999989988888766443 1 1211 233344556677778999999999976 5 8999999999999
Q ss_pred HHHhhcC---C---------CC------CC-eEEEecccccchHHHHHHHHhcCC-eEEEEccCCccCcccccccccccc
Q 010538 118 LVGEAFP---W---------SH------QS-SYMYTMENHNSVLGIREYALSQGA-AAFAIDVEEAVDNDGLSESLVTST 177 (508)
Q Consensus 118 ~~~~~l~---~---------~~------g~-~vl~~~~~h~s~~~~~~~~~~~G~-~v~~v~~~~~~~~~~l~~~~~~~~ 177 (508)
+++.+.. . .+ |+ +|+++...|+++....+.+. .|. +++.||.+.++.+
T Consensus 173 ~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g-~g~~~v~~v~~~~~~~~----------- 240 (497)
T 2qma_A 173 MGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMG-LGEKAVMTVDANADGTM----------- 240 (497)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTT-SCGGGEEEECBCTTSSB-----------
T ss_pred HHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcC-CCcccEEEEecCCCCcC-----------
Confidence 8877631 1 01 45 79999999998876655432 133 7999998766655
Q ss_pred ccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC
Q 010538 178 KISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ 257 (508)
Q Consensus 178 ~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~ 257 (508)
|+++++ ++|++....+.++.+|++++++|+||.+.|+++|.++|++ +|+++|+|++|+.+..
T Consensus 241 ----d~~~L~--~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~------------~~~~l~vD~a~~~~~~ 302 (497)
T 2qma_A 241 ----DITKLD--EVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVK------------HDMWMHVDGAYGGALI 302 (497)
T ss_dssp ----CGGGHH--HHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH------------HTCEEEEEETTGGGGG
T ss_pred ----CHHHHH--HHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHH------------cCCEEEEehhhhHHHH
Confidence 567777 5553210001124488999999999999999999999998 8999999999998877
Q ss_pred CCC----CCCC-CCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEeccc-chhhhhhccCccccccCCCC
Q 010538 258 PPD----LSKY-PVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIA-DIDFVKRRQGVEELFEDGTA 331 (508)
Q Consensus 258 ~~d----~~~~-~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~gt~ 331 (508)
+.+ +..+ ++|++++|+|||+++|.|+|+++++++.. +.+............. ...+. ..... ++.
T Consensus 303 ~~~~~~~~~gi~~~D~i~~s~hK~l~~p~~~G~l~~~~~~~--~~~~~~~~~yl~~~~~~~~~~~------~~~~~-~~r 373 (497)
T 2qma_A 303 LSSHKSRLKGVERAHSISVDFHKLFYQTISCGALLVNDKSN--FKFLLHHADYLNREHDELPNLV------DKSIA-TTK 373 (497)
T ss_dssp GSTTGGGGTTGGGCSEEEEETTTTTCCCSSCEEEEESCGGG--GGGGCC--------------------------C-CSC
T ss_pred hCcchHhhcCcccCCEEEEcchhccCCCcceEEEEEeCHHH--HHHhcCCchhcCCccccCCCcc------ccCCC-CCC
Confidence 665 2333 68999999999888798999999987652 2222111100000000 00000 00001 122
Q ss_pred ChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCc
Q 010538 332 SFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSW 411 (508)
Q Consensus 332 ~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 411 (508)
.+. ...++++++.+...|++++.+++.++++++.+.|+++ ++++++.++. .++++|++.+....
T Consensus 374 ~~~-al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~------~~~~~~~~~~--------~~~v~f~~~~~~~~- 437 (497)
T 2qma_A 374 RFD-ALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTN------DQFELLAEPS--------LSTVLFRATHETAD- 437 (497)
T ss_dssp CCT-HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTC------TTEEECSCCS--------SSEEEEEECCSSSC-
T ss_pred chh-HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhC------CCeEEEcCCC--------ceEEEEEEcCCccC-
Confidence 222 3355667776666678899999999999999999987 4788876543 67999998643211
Q ss_pred cC--HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEec-CCCCCHHHH
Q 010538 412 FG--YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSF-GYMSTFEDA 488 (508)
Q Consensus 412 ~~--~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~-~~~~t~eev 488 (508)
.+ ...+.+.|.++|+.+.++... ...+++|+|+ ++++|.+|+
T Consensus 438 ~~~l~~~l~~~l~~~G~~~~~~~~~-----------------------------------~g~~~lRis~~~~~~t~edi 482 (497)
T 2qma_A 438 LDELNKALRLEALTRGIAVLGETIV-----------------------------------DGKTALKFTILNPCLTTSDF 482 (497)
T ss_dssp HHHHHHHHHHHHHHHTSCBCEEEEE-----------------------------------TTEEEEEEECCCTTCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeEE-----------------------------------CCEEEEEEEecCCCCCHHHH
Confidence 11 123556777788876542100 0146899998 899999999
Q ss_pred HHHHHhhhhhhhh
Q 010538 489 KVNRCSSFDFVNF 501 (508)
Q Consensus 489 ~~l~~~~~~~~~~ 501 (508)
+++++.|+++++.
T Consensus 483 ~~~~~~l~~~~~~ 495 (497)
T 2qma_A 483 ESLLSKINMLAVE 495 (497)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987654
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-29 Score=251.93 Aligned_cols=315 Identities=14% Similarity=0.145 Sum_probs=234.0
Q ss_pred CCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHH
Q 010538 39 NGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALK 117 (508)
Q Consensus 39 ~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~ 117 (508)
++.|+|+.+... +++|.+.+++.+ ...... .|+ .....++|+.+|++++++++ +|++|+|+|++++
T Consensus 16 ~~~i~l~~n~~~~~~~~~v~~a~~~-~~~~~~-----~y~-----~~~~~~lr~~la~~~~~~~~--~i~~t~G~~~~l~ 82 (337)
T 3p1t_A 16 AQAVCLAFNENPEAVEPRVQAAIAA-AAARIN-----RYP-----FDAEPRVMRKLAEHFSCPED--NLMLVRGIDECFD 82 (337)
T ss_dssp CCCEECSSCCCCSCCCHHHHHHHHH-HGGGTT-----SCC-----TTHHHHHHHHHHHHHTSCGG--GEEEESHHHHHHH
T ss_pred CCceEeeCCCCCCCCCHHHHHHHHH-hhhhhc-----cCC-----CCchHHHHHHHHHHhCcCHH--HEEEeCCHHHHHH
Confidence 679999999654 456677666544 333221 121 12367889999999999988 8999999999999
Q ss_pred HHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCC
Q 010538 118 LVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP 197 (508)
Q Consensus 118 ~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~ 197 (508)
+++.++ +|++|+++...|+++. ..++..|++++.+|.+.+..+ |+++++ ++
T Consensus 83 ~~~~~~---~gd~vl~~~p~~~~~~---~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~--~~------ 133 (337)
T 3p1t_A 83 RISAEF---SSMRFVTAWPGFDGYR---ARIAVSGLRHFEIGLTDDLLL---------------DPNDLA--QV------ 133 (337)
T ss_dssp HHHHHS---TTSEEEEESSSCSHHH---HHHTTSCCEEEEECBCTTSSB---------------CHHHHT--TC------
T ss_pred HHHHhc---CCCeEEEeCCCcHHHH---HHHHHcCCEEEEecCCCCCCC---------------CHHHHH--hh------
Confidence 999987 7899998886666554 455567999999998765555 688888 32
Q ss_pred CCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC--CCCCCCCCCCCCcEEEEeccc
Q 010538 198 AGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC--VTQPPDLSKYPVDFVVMSFYK 275 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~--g~~~~d~~~~~~D~~~~S~~K 275 (508)
.+++++++++++||||.++|++++.+++++ +++ +++|++|+. +..+......+.++++.|+||
T Consensus 134 --~~~~~v~i~~p~nptG~~~~~~~l~~l~~~------------~~~-~ivDea~~~~~~~~~~~~~~~~~~i~~~S~sK 198 (337)
T 3p1t_A 134 --SRDDCVVLANPSNPTGQALSAGELDQLRQR------------AGK-LLIDETYVDYSSFRARGLAYGENELVFRSFSK 198 (337)
T ss_dssp --CTTEEEEEESSCTTTCCCCCHHHHHHHHHH------------CSE-EEEECTTGGGSSCSSSCCCCBTTEEEEEESSS
T ss_pred --cCCCEEEEeCCCCCCCCCCCHHHHHHHHHh------------CCc-EEEECCChhhccccccccccCCCEEEEeeCch
Confidence 357999999999999999999999999997 787 566999872 222333334467899999999
Q ss_pred cccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHH
Q 010538 276 IFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPA 353 (508)
Q Consensus 276 ~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~ 353 (508)
++| ++| +|++++++++++.+.+.. ..++++...+.++.++++... .+.+
T Consensus 199 ~~g-~~G~r~G~~~~~~~~~~~l~~~~--------------------------~~~~~~~~~~~a~~~~l~~~~--~~~~ 249 (337)
T 3p1t_A 199 SYG-LAGLRLGALFGPSELIAAMKRKQ--------------------------WFCNVGTLDLHALEAALDNDR--AREA 249 (337)
T ss_dssp TTC-CTTTCCEEEECCHHHHHHHHTTS--------------------------CTTCSCHHHHHHHHHHHTCHH--HHHH
T ss_pred hcc-CcchheEEEEeCHHHHHHHHhhc--------------------------CCCCCCHHHHHHHHHHhCCHH--HHHH
Confidence 998 556 699999998877665431 123455666666666655322 2566
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCC
Q 010538 354 ICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCF 433 (508)
Q Consensus 354 i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~ 433 (508)
..+++.++++++.+.|+++ ++++..+. ++++++..++ + ..+.+.|.++||.+++|..
T Consensus 250 ~~~~~~~~~~~l~~~L~~~-------g~~~~~~~---------~~~~~~~~~~--~-----~~~~~~l~~~gi~v~~g~~ 306 (337)
T 3p1t_A 250 HIAKTLAQRRRVADALRGL-------GYRVASSE---------ANFVLVENAA--G-----ERTLRFLRERGIQVKDAGQ 306 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHT-------TCCBCCCS---------SSEEEEECTT--T-----HHHHHHHHHTTEECEEGGG
T ss_pred HHHHHHHHHHHHHHHHHHC-------cCEECCCC---------CeEEEEEcCC--H-----HHHHHHHHHCCeEEEECcc
Confidence 7778888899999999886 45554332 6777777643 2 2478889999999999865
Q ss_pred CCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 434 CNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 434 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
|.. ++++|+|++ +.+|+++++++|+++.+
T Consensus 307 ~~~-----------------------------------~~~iRis~~---~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 307 FGL-----------------------------------HHHIRISIG---REEDNDRLLAALAEYSD 335 (337)
T ss_dssp GTC-----------------------------------CSEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred CCC-----------------------------------CCeEEEecC---CHHHHHHHHHHHHHHhh
Confidence 522 578999998 89999999999988764
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=257.13 Aligned_cols=326 Identities=12% Similarity=0.076 Sum_probs=243.8
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhc-cccCCCCCccchhhhhhHHHHHHHHHHHHHcCC-CCCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTT-NVYGNPHSQSDISLATCDIVRAAREQVLDYFNA-SMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~-~~~~~~i~~t~g~t~a 115 (508)
++.++|+.+.... +++.+.+++.+.+.. .....+. ....++++++++++|+ +++ +|++|+|+|+|
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~----------~~~~~l~~~la~~~g~~~~~--~i~~~~g~t~a 97 (367)
T 3euc_A 30 HGLVKLDAMENPYRLPPALRSELAARLGEVALNRYPV----------PSSEALRAKLKEVMQVPAGM--EVLLGNGSDEI 97 (367)
T ss_dssp TTCEECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSCC----------CCHHHHHHHHHHHHTCCTTC--EEEEEEHHHHH
T ss_pred CCeeEccCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC----------CcHHHHHHHHHHHhCCCCcc--eEEEcCCHHHH
Confidence 5789999877543 467777776554432 1111111 1156789999999999 677 89999999999
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPER 195 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~ 195 (508)
+++++.++ .++|++|++....|+++... ++..|.+++.+|.+.+..+ |+++++ +++
T Consensus 98 ~~~~~~~~-~~~gd~Vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~---------------d~~~l~--~~l--- 153 (367)
T 3euc_A 98 ISMLALAA-ARPGAKVMAPVPGFVMYAMS---AQFAGLEFVGVPLRADFTL---------------DRGAML--AAM--- 153 (367)
T ss_dssp HHHHHHHT-CCTTCEEEEEESCSCCSCHH---HHTTTCEEEEEECCTTSCC---------------CHHHHH--HHH---
T ss_pred HHHHHHHH-cCCCCEEEEcCCCHHHHHHH---HHHcCCeEEEecCCCCCCC---------------CHHHHH--HHh---
Confidence 99999998 68899999998888876654 4456999999999875555 678887 444
Q ss_pred CCCCC-CceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC--CeEEEEeccccCCCC--C-CCCCCCCCcEE
Q 010538 196 DPAGD-AYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG--RWMVLIDAAKGCVTQ--P-PDLSKYPVDFV 269 (508)
Q Consensus 196 ~~~~~-~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~--g~~vivD~a~~~g~~--~-~d~~~~~~D~~ 269 (508)
++ ++++|++++++||||.++|.+++.++++ +|+++ |+++|+|++|+.... . ..+...+.+++
T Consensus 154 ---~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~---------~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~ 221 (367)
T 3euc_A 154 ---AEHQPAIVYLAYPNNPTGNLFDAADMEAIVR---------AAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLV 221 (367)
T ss_dssp ---HHHCCSEEEEESSCTTTCCCCCHHHHHHHHH---------HTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEE
T ss_pred ---hccCCCEEEEcCCCCCCCCCCCHHHHHHHHH---------hhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEE
Confidence 33 6899999999999999999888887776 56669 999999999874221 1 12233456799
Q ss_pred EEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH
Q 010538 270 VMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN 347 (508)
Q Consensus 270 ~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~ 347 (508)
+.|+||+ + ++| +|++++++++++.+.+.. ...+.+....+++.++++.
T Consensus 222 ~~s~sK~-~-~~G~r~G~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~a~~~~l~~-- 271 (367)
T 3euc_A 222 MRTVSKL-G-LAGIRLGYVAGDPQWLEQLDKVR--------------------------PPYNVNVLTEATALFALEH-- 271 (367)
T ss_dssp EEECCCT-T-SCSCCEEEEEECHHHHHHHGGGC--------------------------CSSCCCHHHHHHHHHHHTT--
T ss_pred Eecchhh-c-ccccCceeeeeCHHHHHHHHHhC--------------------------CCCCCCHHHHHHHHHHhcC--
Confidence 9999998 6 445 799999988877665431 1234566667777767765
Q ss_pred hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCe
Q 010538 348 SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQ 427 (508)
Q Consensus 348 ~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~ 427 (508)
...++.+.+++.++++++.+.|+++ ++++++.+ . ++++++.++ +..++.+.|.++||.
T Consensus 272 ~~~~~~~~~~~~~~~~~l~~~l~~~------~g~~~~~~-~--------~~~~~~~~~-------~~~~l~~~l~~~gi~ 329 (367)
T 3euc_A 272 VAVLDEQAAQLRAERSRVAEGMAAH------GGVTVFPS-A--------ANFLLARVP-------DAAQTFDRLLARKVL 329 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTS------TTCEECCC-S--------SSEEEEECS-------CHHHHHHHHHTTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC------CCcEECCC-C--------CeEEEEECC-------CHHHHHHHHHHCCeE
Confidence 2236888999999999999999987 36775432 2 678888876 224588889999999
Q ss_pred eccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 428 LRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 428 v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
+++|..|... ..+++|+|++ |.+|+++++++|+++++
T Consensus 330 v~~~~~~~~~---------------------------------~~~~iRis~~---~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 330 IKNVSKMHPL---------------------------------LANCLRVTVS---TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp CEECGGGCGG---------------------------------GTTEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred EEECCccCCC---------------------------------CCCEEEEecC---CHHHHHHHHHHHHHHhc
Confidence 9998766432 2689999988 99999999999988753
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=259.26 Aligned_cols=345 Identities=11% Similarity=0.063 Sum_probs=245.4
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC--CCCCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN--ASMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~--~~~~~~~i~~t~g~t~a 115 (508)
++++.|..+.... +++.+.+++.+.+.... ..|... ..++.+++.+.+++.+| ++++ +|++|+|+|+|
T Consensus 27 ~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~-----~~y~~~--~~~l~~~la~~l~~~~g~~~~~~--~i~~~~g~~~a 97 (391)
T 3dzz_A 27 EKELPMWIAEMDFKIAPEIMASMEEKLKVAA-----FGYESV--PAEYYKAVADWEEIEHRARPKED--WCVFASGVVPA 97 (391)
T ss_dssp TTCEECCSSCCSSCCCHHHHHHHHHHHTTCC-----CCCBCC--CHHHHHHHHHHHHHHHSCCCCGG--GEEEESCHHHH
T ss_pred CCceeccccCCCCCCCHHHHHHHHHHHhcCc-----CCCCCC--CHHHHHHHHHHHHHHhCCCCCHH--HEEECCCHHHH
Confidence 5688888776443 46777777655432211 111111 35667788888888888 5666 89999999999
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC-ccCccccccccccccccccchhhhhcCCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE-AVDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
+++++.++ .++|++|+++...|+++.. .++..|.+++.+|.+. ++.. ..|+++++ ++++
T Consensus 98 ~~~~~~~l-~~~gd~vl~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~-------------~~d~~~l~--~~l~- 157 (391)
T 3dzz_A 98 ISAMVRQF-TSPGDQILVQEPVYNMFYS---VIEGNGRRVISSDLIYENSKY-------------SVNWADLE--EKLA- 157 (391)
T ss_dssp HHHHHHHH-SCTTCEEEECSSCCHHHHH---HHHHTTCEEEECCCEEETTEE-------------ECCHHHHH--HHHT-
T ss_pred HHHHHHHh-CCCCCeEEECCCCcHHHHH---HHHHcCCEEEEeeeeecCCce-------------eecHHHHH--HHHh-
Confidence 99999998 6889999998877776544 4456799999999852 2211 11678888 5552
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCCCCCCCCC---Cc
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQPPDLSKYP---VD 267 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d~~~~~---~D 267 (508)
.+++++|++++++||||.++|.+.+.++++ +|+++|+++|+|++|+. |..+.++...+ .|
T Consensus 158 ----~~~~~~v~i~~p~nptG~~~~~~~l~~i~~---------~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d 224 (391)
T 3dzz_A 158 ----TPSVRMMVFCNPHNPIGYAWSEEEVKRIAE---------LCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKN 224 (391)
T ss_dssp ----STTEEEEEEESSBTTTTBCCCHHHHHHHHH---------HHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGG
T ss_pred ----ccCceEEEEECCCCCCCcccCHHHHHHHHH---------HHHHCCCEEEEecccccccCCCCCceehhhcCccccC
Confidence 257899999999999999977655555544 34449999999999985 33444554443 56
Q ss_pred --EEEEeccccccCCCc--ceEEEEe-chhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHH
Q 010538 268 --FVVMSFYKIFGYPTG--LGALIMR-NDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHG 342 (508)
Q Consensus 268 --~~~~S~~K~~g~P~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~a 342 (508)
+++.|+||++| ++| +|+++++ +++.+.+.... .....++++...++++.++
T Consensus 225 ~~i~~~s~sK~~g-~~G~r~G~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~a~~~~ 280 (391)
T 3dzz_A 225 WVVSLISPSKTFN-LAALHAACAIIPNPDLRARAEESF-----------------------FLAGIGEPNLLAIPAAIAA 280 (391)
T ss_dssp GEEEEECSHHHHT-CTTTCCEEEECCSHHHHHHHHHHH-----------------------HHHTCSSCCTTHHHHHHHH
T ss_pred cEEEEEeChhhcc-ccchhheEEEECCHHHHHHHHHHH-----------------------HhhccCCCCHHHHHHHHHH
Confidence 99999999987 445 8999997 77766554331 1112234566667777777
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHhc-ccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHH
Q 010538 343 FNLINSLTVPAICRHIASLGMYVRKVLLS-LRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLA 421 (508)
Q Consensus 343 l~~~~~~g~~~i~~~~~~l~~~l~~~L~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L 421 (508)
++... ..++.+.+++.++++++.+.|++ + ++++++.+.. +.++++.++... .+..++.+.|
T Consensus 281 l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~------~~~~~~~~~~--------~~~~~~~~~~~~---~~~~~~~~~l 342 (391)
T 3dzz_A 281 YEEGH-DWLRELKQVLRDNFAYAREFLAKEV------PEVKVLDSNA--------SYLAWVDISALG---MNAEDFCKYL 342 (391)
T ss_dssp HHHCH-HHHHHHHHHHHHHHHHHHHHHHHHC------TTSEECCCCB--------SSEEEEECGGGC---SCHHHHHHHH
T ss_pred HhccH-HHHHHHHHHHHHHHHHHHHHHHhhC------CCcEEeccCc--------eEEEEEehhhcC---CCHHHHHHHH
Confidence 76532 23688899999999999999988 6 3688776543 566777776421 2345678888
Q ss_pred -hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 422 -SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 422 -~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
+++||.+++|..|... .++++|+|++ ++.++++++++.|+++++
T Consensus 343 ~~~~gi~v~~g~~~~~~---------------------------------~~~~iRis~~--~~~~~i~~~l~~l~~~l~ 387 (391)
T 3dzz_A 343 REKTGLIISAGNGYRGN---------------------------------GHEFVRINLA--CPKELVIDGMQRLKQGVL 387 (391)
T ss_dssp HHHHCEECEESGGGCTT---------------------------------GGGEEEEECC--SCHHHHHHHHHHHHHHHH
T ss_pred HHhCCEEEeCchhhCCC---------------------------------CCCEEEEEec--CCHHHHHHHHHHHHHHHH
Confidence 5899999998766542 2589999999 699999999999998876
Q ss_pred hh
Q 010538 501 FS 502 (508)
Q Consensus 501 ~~ 502 (508)
.+
T Consensus 388 ~~ 389 (391)
T 3dzz_A 388 NL 389 (391)
T ss_dssp TC
T ss_pred Hh
Confidence 54
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.9e-31 Score=278.66 Aligned_cols=363 Identities=12% Similarity=0.010 Sum_probs=254.1
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhcccc--CCCCCccch-hhhhhHHHHHHHHHHHHHcCCCCCC--ceEEEcCChH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVY--GNPHSQSDI-SLATCDIVRAAREQVLDYFNASMKD--YKCIFTSGAT 113 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~r~~la~~~~~~~~~--~~i~~t~g~t 113 (508)
.+.|.|. ++.+++++.+++++.+ .+.+.+ ++|++.++. +.....+.+.+++++++++|+++++ .+|++++|+
T Consensus 44 ~~~i~L~-a~e~~~~~~V~eA~~~-~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs- 120 (483)
T 1rv3_A 44 RVGLELI-ASENFASRAVLEALGS-CLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS- 120 (483)
T ss_dssp HSSEECC-TTCCCCCHHHHHHHTS-GGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH-
T ss_pred hcCeEEE-cCCCCCCHHHHHHHHH-HHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcH-
Confidence 4678885 4566789999888755 444444 556654332 3344566778999999999998752 137888877
Q ss_pred HHHHHHHhhcCCCCCCeEEEecccccchHHHHH-----HHHhcC--CeEEEEccC-CccCccccccccccccccccchhh
Q 010538 114 AALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-----YALSQG--AAAFAIDVE-EAVDNDGLSESLVTSTKISLLPIQ 185 (508)
Q Consensus 114 ~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-----~~~~~G--~~v~~v~~~-~~~~~~~l~~~~~~~~~~~~d~~~ 185 (508)
+++.+++.++ .++||+|+++..+|+++..... .+...| .+++.++++ +++.+ |+++
T Consensus 121 ~an~~~~~al-l~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~i---------------D~d~ 184 (483)
T 1rv3_A 121 PANFAVYTAL-VEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYI---------------DYDR 184 (483)
T ss_dssp HHHHHHHHHH-TCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSB---------------CHHH
T ss_pred HHHHHHHHHh-cCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcC---------------CHHH
Confidence 7888888888 7899999999999988753210 001113 344444445 34445 6888
Q ss_pred hhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCC-
Q 010538 186 RRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKY- 264 (508)
Q Consensus 186 l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~- 264 (508)
++ +++. .++|++|++ +++|++ .+.|+++|.++|++ +|+++++|++|+.|..+.++...
T Consensus 185 le--~~i~-----~~~tklIi~-~~sn~~-~~~dl~~i~~ia~~------------~g~~livD~ah~~g~~~~~~~~~p 243 (483)
T 1rv3_A 185 LE--ENAR-----LFHPKLIIA-GTSCYS-RNLDYGRLRKIADE------------NGAYLMADMAHISGLVVAGVVPSP 243 (483)
T ss_dssp HH--HHHH-----HHCCSEEEE-CCSSCC-SCCCHHHHHHHHHH------------TTCEEEEECTTTHHHHHHTSSCCG
T ss_pred HH--HHHh-----hcCCcEEEE-eCCcCC-CcCCHHHHHHHHHH------------cCCEEEEEccchhcccccCCCCCC
Confidence 88 4442 157899999 888888 99999999999998 99999999999876554444444
Q ss_pred --CCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHH
Q 010538 265 --PVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHG 342 (508)
Q Consensus 265 --~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~a 342 (508)
++|++++|+||+++||.| |+++++++... +. ..+|....+.. ...+.. .......|+++...++++.+|
T Consensus 244 ~~~~div~~s~~K~l~Gprg-G~i~~~~~~~~-~~--~~~g~~~~y~~-~~~~~~----~~~~~~~g~~~~~~iaal~~A 314 (483)
T 1rv3_A 244 FEHCHVVTTTTHKTLRGCRA-GMIFYRRGVRS-VD--PKTGKEILYNL-ESLINS----AVFPGLQGGPHNHAIAGVAVA 314 (483)
T ss_dssp GGTCSEEEEESSGGGCCCSC-EEEEEECSBCC----------CCBCCH-HHHHHH----HHTTTTCCSCCHHHHHHHHHH
T ss_pred CCCCcEEEecCcccCCCCCc-eEEEEcchhhh-hc--cccCcchhhHH-HHHhhh----hcCCcccCCccHHHHHHHHHH
Confidence 689999999998877998 99999987532 22 11111000000 000000 001112588899999999999
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHh
Q 010538 343 FNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLAS 422 (508)
Q Consensus 343 l~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~ 422 (508)
++.+.+.+++.+.+++.++++++.+.|.++ |++++.+... ..++++.+.... ++..++.+.|.
T Consensus 315 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~~-------~~~~~v~~~~~g---~~~~~~~~~L~ 377 (483)
T 1rv3_A 315 LKQAMTPEFKEYQRQVVANCRALSAALVEL-------GYKIVTGGSD-------NHLILVDLRSKG---TDGGRAEKVLE 377 (483)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-------TCEEGGGSCS-------SSEEEEEGGGGT---CCHHHHHHHHH
T ss_pred HHHHhChhHHHHHHHHHHHHHHHHHHHHhc-------CCEeccCCCC-------CceEEEeccCCC---CCHHHHHHHHH
Confidence 998766568999999999999999999886 6888765321 456666764311 34456889999
Q ss_pred hCCCeec----cCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCC----HHHHHHHHHh
Q 010538 423 LSGIQLR----TGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMST----FEDAKVNRCS 494 (508)
Q Consensus 423 ~~gI~v~----~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t----~eev~~l~~~ 494 (508)
+.||.++ +|..|.. .++.+|||++.++| ++|+++++++
T Consensus 378 ~~gI~v~~~~~pg~~~~~----------------------------------~~~~iRis~~~~~t~g~~~edi~~~~~~ 423 (483)
T 1rv3_A 378 ACSIACNKNTCPGDKSAL----------------------------------RPSGLRLGTPALTSRGLLEKDFQKVAHF 423 (483)
T ss_dssp HTTEECEEECCSSCSCTT----------------------------------SCCEEEEECHHHHHTTCCHHHHHHHHHH
T ss_pred hCCcEEecCCCCCCCcCC----------------------------------CCceEEeecCCcccCCCCHHHHHHHHHH
Confidence 9999998 6654321 25789999999888 9999999999
Q ss_pred hhhhhhh
Q 010538 495 SFDFVNF 501 (508)
Q Consensus 495 ~~~~~~~ 501 (508)
|.++++.
T Consensus 424 l~~~l~~ 430 (483)
T 1rv3_A 424 IHRGIEL 430 (483)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988764
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=260.08 Aligned_cols=344 Identities=13% Similarity=0.083 Sum_probs=246.5
Q ss_pred CCeeeeCCCCCC----CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHH
Q 010538 40 GTVYLDHAGATL----YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAA 115 (508)
Q Consensus 40 ~~iyld~~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~a 115 (508)
+.-|+|.++..+ .++.+.+++.+.+. . +..+..............+++++.+++++|.+ + .|++++| ++|
T Consensus 42 g~~~id~~~~~~~g~~~~~~v~~a~~~~~~-~-~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~-~--~i~~~sG-t~a 115 (399)
T 3tqx_A 42 EKEVLNFCANNYLGLADHPALIKTAQTVVE-Q-YGFGMASVRFICGTQTIHKELEKDISEFLGTD-D--TILYSSC-FDA 115 (399)
T ss_dssp TEEEEECSSCCTTSCTTCHHHHHHHHHHHH-H-HCSCCCSCCCCCCCBHHHHHHHHHHHHHHTCS-E--EEEESCH-HHH
T ss_pred CeeEEEeeccCcccccCCHHHHHHHHHHHH-H-hCCCCCCcCccccCchHHHHHHHHHHHHHCCC-c--EEEECch-HHH
Confidence 445677666543 35777777655443 2 22222111111223566888999999999986 3 4666655 779
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPER 195 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~ 195 (508)
+.+++.++ .++|+.|+++...|+++... ++..|.+++.+|..+ +++++ +.+++.
T Consensus 116 ~~~~l~~~-~~~gd~v~~~~~~~~~~~~~---~~~~g~~~~~~~~~d--------------------~~~l~--~~l~~~ 169 (399)
T 3tqx_A 116 NGGLFETL-LGPEDAIISDELNHASIIDG---IRLCKAQRYRYKNNA--------------------MGDLE--AKLKEA 169 (399)
T ss_dssp HHTTHHHH-CCTTCEEEEETTCCHHHHHH---HHSCCSEEEEECTTC--------------------TTHHH--HHHHHH
T ss_pred HHHHHHHh-cCCCCEEEECCcccHHHHHH---HHHcCCceeEeCCCC--------------------HHHHH--HHHHhh
Confidence 99988888 68899999999888876654 445689999988632 23333 222110
Q ss_pred CCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCC------CC--CCCc
Q 010538 196 DPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDL------SK--YPVD 267 (508)
Q Consensus 196 ~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~------~~--~~~D 267 (508)
.....++++|++++++||||.++|+++|.++|++ +|+++|+|++|+.|..+.+. .. .+.|
T Consensus 170 ~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~d 237 (399)
T 3tqx_A 170 DEKGARFKLIATDGVFSMDGIIADLKSICDLADK------------YNALVMVDDSHAVGFIGENGRGTPEYCGVADRVD 237 (399)
T ss_dssp HTTTCSSEEEEEESEETTTTEECCHHHHHHHHHH------------TTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCS
T ss_pred hccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHH------------cCCEEEEECCccccccCCCCCchHHhhCCCCCCc
Confidence 0111378999999999999999999999999998 99999999999866543321 11 2579
Q ss_pred EEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH
Q 010538 268 FVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN 347 (508)
Q Consensus 268 ~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~ 347 (508)
+++.|+||++++|.| |+++.+++.++.+..... .. ...++++...++++.++++.+.
T Consensus 238 i~~~s~sK~~~g~~g-G~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~~~~~~~~~~~l~~~~ 294 (399)
T 3tqx_A 238 ILTGTLGKALGGASG-GYTSGHKEIIEWLRNRSR---------------------PY-LFSNTVAPVIVATSLKVLELLK 294 (399)
T ss_dssp EEEEESSSSSCSSCC-EEEEECHHHHHHHHHHCH---------------------HH-HSSCCCCHHHHHHHHHHHHHHH
T ss_pred EEEecchHhcccCce-EEEEcCHHHHHHHHHhCc---------------------ce-eccCCCcHHHHHHHHHHHHHHh
Confidence 999999999887777 999999988776654311 01 1245677777888888888764
Q ss_pred hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCe
Q 010538 348 SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQ 427 (508)
Q Consensus 348 ~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~ 427 (508)
.+.+++++++.++++++.+.|+++ ++++..+ . ++++++.+++. .+..++.+.|.++||.
T Consensus 295 -~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~-~--------~~~~~~~~~~~----~~~~~~~~~l~~~gi~ 353 (399)
T 3tqx_A 295 -TEGPQLRKQLQENSRYFRAGMEKL-------GFQLVPG-N--------HPIIPVMLGDA----QLATNMADHLLQEGIY 353 (399)
T ss_dssp -HTHHHHHHHHHHHHHHHHHHHHHH-------TCCBCCC-S--------SSEEEEEEECH----HHHHHHHHHHHHTTEE
T ss_pred -hccHHHHHHHHHHHHHHHHHHHHc-------CCCcCCC-C--------CCEEEEEeCCH----HHHHHHHHHHHHCCCE
Confidence 457999999999999999999987 4655522 2 78888888753 1234588888889999
Q ss_pred eccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhh
Q 010538 428 LRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 428 v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~ 503 (508)
++++..+..+. ..+++|++++.++|.+|++++++.|+++++.++
T Consensus 354 v~~~~~~~~~~--------------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 397 (399)
T 3tqx_A 354 VVGFSYPVVPM--------------------------------GKARIRVQMSAVHTQQQLDRAIEAFGQVGKKLG 397 (399)
T ss_dssp CCEECTTTSCT--------------------------------TCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred EeeeCCCCCCC--------------------------------CCceEEEEeecCCCHHHHHHHHHHHHHHHHHhc
Confidence 99764332111 257999999999999999999999999887654
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-29 Score=267.05 Aligned_cols=348 Identities=13% Similarity=0.043 Sum_probs=256.5
Q ss_pred CCeeeeCCCCCC---CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC--CCCceEEEcCChHH
Q 010538 40 GTVYLDHAGATL---YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS--MKDYKCIFTSGATA 114 (508)
Q Consensus 40 ~~iyld~~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~--~~~~~i~~t~g~t~ 114 (508)
+..|.+....+. .++.+.+.+.+.+......++.. +........+.+++++++++++|++ ++ ++++|+|+|+
T Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~la~~~g~~~~~~--~~~~~~ggt~ 137 (497)
T 3mc6_A 61 HTQWKEGKVSGAVYHGGDDLIHLQTIAYEKYCVANQLH-PDVFPAVRKMESEVVSMVLRMFNAPSDTG--CGTTTSGGTE 137 (497)
T ss_dssp CCCGGGTCBSSSCSCCCHHHHHHHHHHHHHTSSCBTTC-TTTCHHHHHHHHHHHHHHHHHTTCCTTTC--CEEEESSHHH
T ss_pred CCCCCCCCEeeecCCCchHHHHHHHHHHHHHhhcCCCC-cccChHHHHHHHHHHHHHHHHhCCCCCCC--eEEEcCcHHH
Confidence 455555433332 23555555444332211223322 2223345677788999999999998 55 7999999999
Q ss_pred HHHHHHhhcCC----CCC---CeEEEecccccchHHHHHHHHhcCCeEEEEccCC-ccCccccccccccccccccchhhh
Q 010538 115 ALKLVGEAFPW----SHQ---SSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE-AVDNDGLSESLVTSTKISLLPIQR 186 (508)
Q Consensus 115 al~~~~~~l~~----~~g---~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~-~~~~~~l~~~~~~~~~~~~d~~~l 186 (508)
|+.+++.++.. ++| ++|+++...|+++....+ ..|++++.||.+. ++.+ |++++
T Consensus 138 a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~~~~~---~~G~~~~~v~~~~~~~~~---------------d~~~l 199 (497)
T 3mc6_A 138 SLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAAY---YFGMKLRHVELDPTTYQV---------------DLGKV 199 (497)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHHHHHH---HSCCEEEEECBCTTTCSB---------------CTTTT
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHHHHHH---HcCCeEEEEecCcccCcC---------------CHHHH
Confidence 99999988721 023 799999988988765544 4699999999876 4555 67888
Q ss_pred hcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCC-----------
Q 010538 187 RKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCV----------- 255 (508)
Q Consensus 187 ~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g----------- 255 (508)
+ +++ ++++++|++++++|+||.+.|+++|.++|++ +|+++|+|++|+.+
T Consensus 200 ~--~~i------~~~~~~v~~~~p~nptG~~~~l~~i~~la~~------------~g~~livD~a~~~~~~~f~~~~~~~ 259 (497)
T 3mc6_A 200 K--KFI------NKNTVLLVGSAPNFPHGIADDIEGLGKIAQK------------YKLPLHVDSCLGSFIVSFMEKAGYK 259 (497)
T ss_dssp G--GGC------CSSEEEEEEETTCTTTCCCCSCTTTTTHHHH------------TTCCEEEETTTTHHHHGGGTTTTCC
T ss_pred H--HHH------hhCCEEEEEECCCCCCCcCCCHHHHHHHHHH------------hCCEEEEECcchhhhhhhhhhhccc
Confidence 8 555 4578999999999999999999999999998 99999999998732
Q ss_pred CC-CCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccc----cccCceEEecccchhhhhhccCccccccCCC
Q 010538 256 TQ-PPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNT----YFSGGTVAASIADIDFVKRRQGVEELFEDGT 330 (508)
Q Consensus 256 ~~-~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt 330 (508)
.. +++....++|++++|+||++++|.|+|+++++++.+...... +.++.. ......|+
T Consensus 260 ~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~g~ 322 (497)
T 3mc6_A 260 NLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGLY-----------------GSPTLAGS 322 (497)
T ss_dssp SCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTCTTSCB-----------------CCSSSCSS
T ss_pred CCccccccCCCCcEEEECchhhcCCCCCceeEEecCHHHHhhhhcccccccCCCc-----------------CCcCcccC
Confidence 22 466777789999999999875588999999998776543221 111100 11122456
Q ss_pred CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhc-ccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCC
Q 010538 331 ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLS-LRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDG 409 (508)
Q Consensus 331 ~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 409 (508)
.+...+++++++++.+...|++++.+++.++++++.+.|++ + ++++++.++. .++++|..++
T Consensus 323 ~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~------~g~~~~~~~~--------~~~v~~~~~~--- 385 (497)
T 3mc6_A 323 RPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENI------PDLDIMGNPR--------YSVISFSSKT--- 385 (497)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC------TTCEECSCCC--------SSEEEEECTT---
T ss_pred CcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC------CCEEEecCCC--------eeEEEEeCCC---
Confidence 66666888999999888888899999999999999999998 5 3788886643 6888888654
Q ss_pred CccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHH
Q 010538 410 SWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAK 489 (508)
Q Consensus 410 ~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~ 489 (508)
++..++.+.|.++||.++.+.. +..+|++++ .+|.+|++
T Consensus 386 --~~~~~l~~~L~~~Gi~v~~~~~--------------------------------------~~~~ri~~~-~~t~e~i~ 424 (497)
T 3mc6_A 386 --LNIHELSDRLSKKGWHFNALQK--------------------------------------PVALHMAFT-RLSAHVVD 424 (497)
T ss_dssp --TTHHHHHHHHHTTTCBCEECCS--------------------------------------SCCEEEECC-TTTTCTHH
T ss_pred --CCHHHHHHHHHhCCEEEecCCC--------------------------------------CCeEEEEEe-CCCHHHHH
Confidence 3445689999999999876421 346899999 78999999
Q ss_pred HHHHhhhhhhhhhh
Q 010538 490 VNRCSSFDFVNFSQ 503 (508)
Q Consensus 490 ~l~~~~~~~~~~~~ 503 (508)
++++.|++.++.+.
T Consensus 425 ~~~~~L~~~l~~~~ 438 (497)
T 3mc6_A 425 EICDILRTTVQELK 438 (497)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999886653
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-29 Score=255.61 Aligned_cols=333 Identities=17% Similarity=0.093 Sum_probs=244.7
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHH
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALK 117 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~ 117 (508)
++.++|+.+.... +++.+.+++.+.+ .. .+ .|... ....++++.++++++++++ +|++|+|+|+|+.
T Consensus 25 ~~~i~l~~~~~~~~~~~~v~~a~~~~~-~~--~~---~y~~~----~~~~~l~~~la~~~~~~~~--~v~~~~g~~~a~~ 92 (381)
T 1v2d_A 25 LGAVNLGQGFPSNPPPPFLLEAVRRAL-GR--QD---QYAPP----AGLPALREALAEEFAVEPE--SVVVTSGATEALY 92 (381)
T ss_dssp HTCEECCCCSCSSCCCHHHHHHHHHHT-TT--SC---SCCCT----TCCHHHHHHHHHHHTSCGG--GEEEESSHHHHHH
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHH-HH--hc---CCCCC----CCCHHHHHHHHHhcCCChh--hEEEcCChHHHHH
Confidence 4678888776543 4667777665543 22 11 12111 1246789999999999988 8999999999999
Q ss_pred HHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccC---CccCccccccccccccccccchhhhhcCCCCCC
Q 010538 118 LVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVE---EAVDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 118 ~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~---~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
+++.++ ..+|++|+++...|+++... ++..|.+++.+|.+ ++..+ |+++++ +++
T Consensus 93 ~~~~~~-~~~gd~Vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~~---------------d~~~l~--~~l-- 149 (381)
T 1v2d_A 93 VLLQSL-VGPGDEVVVLEPFFDVYLPD---AFLAGAKARLVRLDLTPEGFRL---------------DLSALE--KAL-- 149 (381)
T ss_dssp HHHHHH-CCTTCEEEEEESCCTTHHHH---HHHTTCEEEEEECEEETTEEEC---------------CHHHHH--TTC--
T ss_pred HHHHHh-CCCCCEEEEcCCCchhHHHH---HHHcCCEEEEEeCCCCCccCCc---------------CHHHHH--Hhc--
Confidence 999998 67899999999888887654 45579999999986 33334 688998 555
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCH---HHHHHHHcCCccccccCCCCCCCeEEEEeccccCC---CCCCCCC--CCCC
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNL---DLINIMKKNPERILEISPFSKGRWMVLIDAAKGCV---TQPPDLS--KYPV 266 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i---~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g---~~~~d~~--~~~~ 266 (508)
++++++|++++++||||.++|. ++|.++|++ +|+++|+|++|+.+ ..+.++. ..+.
T Consensus 150 ----~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~------------~~~~li~De~~~~~~~g~~~~~~~~~~~~~ 213 (381)
T 1v2d_A 150 ----TPRTRALLLNTPMNPTGLVFGERELEAIARLARA------------HDLFLISDEVYDELYYGERPRRLREFAPER 213 (381)
T ss_dssp ----CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH------------TTCEEEEECTTTTCBSSSCCCCHHHHCTTT
T ss_pred ----CcCCEEEEECCCCCCCCCccCHHHHHHHHHHHHH------------cCCEEEEEcCccccccCCCCCCHHHhcCCC
Confidence 4578999999999999999984 555555655 99999999999853 3334443 3478
Q ss_pred cEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHH
Q 010538 267 DFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFN 344 (508)
Q Consensus 267 D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~ 344 (508)
|+++.|+||++| ++| +|++++++++++.+.... ....++.+....+++.++++
T Consensus 214 ~~~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~a~~~~l~ 268 (381)
T 1v2d_A 214 TFTVGSAGKRLE-ATGYRVGWIVGPKEFMPRLAGMR------------------------QWTSFSAPTPLQAGVAEALK 268 (381)
T ss_dssp EEEEEEHHHHTT-CGGGCCEEEECCTTTHHHHHHHH------------------------HHHTSSCCHHHHHHHHHHHH
T ss_pred EEEEeechhhcC-CcccceEEEEeCHHHHHHHHHHH------------------------hhcccCCCcHHHHHHHHHHh
Confidence 999999999998 657 899999988876654321 11123456666677777777
Q ss_pred HHH-hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhh
Q 010538 345 LIN-SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASL 423 (508)
Q Consensus 345 ~~~-~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~ 423 (508)
... ..+++++.+++.++++++.+.|++. +++++.+.. +.++++.+++. . +.+.|.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~--------~~~~~~~~~~~---~-----~~~~l~~ 325 (381)
T 1v2d_A 269 LARREGFYEALREGYRRRRDLLAGGLRAM-------GLRVYVPEG--------TYFLMAELPGW---D-----AFRLVEE 325 (381)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHT-------TCCEECCSB--------SSEEEEECTTC---C-----HHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHC-------CCEecCCCc--------ceEEEEecChH---h-----HHHHHHh
Confidence 542 3457889999999999999999885 577765542 57888887643 1 6778889
Q ss_pred CCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhh
Q 010538 424 SGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 424 ~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~ 503 (508)
+||.+++|..|.... ...+++|||++. |.++++++++.|+++++..+
T Consensus 326 ~gi~v~~g~~~~~~~-------------------------------~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~~r 372 (381)
T 1v2d_A 326 ARVALIPASAFYLED-------------------------------PPKDLFRFAFCK--TEEELHLALERLGRVVNSPR 372 (381)
T ss_dssp TCEECEEGGGGCSSS-------------------------------CCTTEEEEECCS--CHHHHHHHHHHHHHHC----
T ss_pred CCEEEecchHhCCCC-------------------------------CCCCEEEEEeCC--CHHHHHHHHHHHHHHHhhcc
Confidence 999999987554310 125789999997 99999999999998876543
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-29 Score=257.93 Aligned_cols=342 Identities=13% Similarity=0.072 Sum_probs=245.0
Q ss_pred CCCeeeeCCCCCCC----CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHH
Q 010538 39 NGTVYLDHAGATLY----SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATA 114 (508)
Q Consensus 39 ~~~iyld~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~ 114 (508)
++..|+|.++..+. ++.+.+++.+.+ .. ++.+...............++++.+++++|++ + .|++++ +|+
T Consensus 43 ~g~~~id~~~~~~~g~~~~~~v~~a~~~~~-~~-~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~-~--~i~~~s-Gs~ 116 (401)
T 1fc4_A 43 DGSHVINFCANNYLGLANHPDLIAAAKAGM-DS-HGFGMASVRFICGTQDSHKELEQKLAAFLGME-D--AILYSS-CFD 116 (401)
T ss_dssp TSCEEEECCCSCTTSCTTCHHHHHHHHHHH-HH-HCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCS-E--EEEESC-HHH
T ss_pred CCccEEEeeccCcccccCCHHHHHHHHHHH-HH-hCCCCCCCCcccCCcHHHHHHHHHHHHHhCCC-c--EEEeCC-hHH
Confidence 45667777665433 677877775543 22 22222111111112456788999999999987 4 565555 577
Q ss_pred HHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCC
Q 010538 115 ALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 115 al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
++..++.++ ..+|++|+++...|+++... ++..|++++.+|.. |+++++ +.+++
T Consensus 117 a~~~~~~~~-~~~gd~v~~~~~~~~~~~~~---~~~~g~~~~~~~~~--------------------d~~~l~--~~l~~ 170 (401)
T 1fc4_A 117 ANGGLFETL-LGAEDAIISDALNHASIIDG---VRLCKAKRYRYANN--------------------DMQELE--ARLKE 170 (401)
T ss_dssp HHHTTHHHH-CCTTCEEEEETTCCHHHHHH---HHTSCSEEEEECTT--------------------CHHHHH--HHHHH
T ss_pred HHHHHHHHH-cCCCCEEEEcchhHHHHHHH---HHHcCCceEEECCC--------------------CHHHHH--HHHHH
Confidence 999888888 67889999999888776544 45679999888742 234444 33311
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC-C--------CCCCCCC
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ-P--------PDLSKYP 265 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~-~--------~d~~~~~ 265 (508)
......++++|++++++||||.++|+++|.++|++ +|+++|+|++|+.|.. + +++.. +
T Consensus 171 ~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~------------~~~~li~De~~~~g~~~~~g~~~~~~~~~~~-~ 237 (401)
T 1fc4_A 171 AREAGARHVLIATDGVFSMDGVIANLKGVCDLADK------------YDALVMVDDSHAVGFVGENGRGSHEYCDVMG-R 237 (401)
T ss_dssp HHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHH------------TTEEEEEECTTTTTTSSTTSCCHHHHTTCTT-C
T ss_pred hhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHH------------cCCEEEEECcccccccCCCCCccHHHcCCCc-C
Confidence 00001168999999999999999999999999998 8999999999976554 2 34433 6
Q ss_pred CcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHH
Q 010538 266 VDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNL 345 (508)
Q Consensus 266 ~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~ 345 (508)
+|+++.|+||+++++.| |++++++++++.+.+... ... ..++.+...++++.++++.
T Consensus 238 ~di~~~s~sK~~~~~~g-G~~~~~~~~~~~l~~~~~---------------------~~~-~~~~~~~~~~~a~~~~l~~ 294 (401)
T 1fc4_A 238 VDIITGTLGKALGGASG-GYTAARKEVVEWLRQRSR---------------------PYL-FSNSLAPAIVAASIKVLEM 294 (401)
T ss_dssp CSEEEEESSSTTCSSSC-EEEEECHHHHHHHHHHCH---------------------HHH-HSCCCCHHHHHHHHHHHHH
T ss_pred CcEEEecchhhccCCCC-EEEEcCHHHHHHHHHhCc---------------------Cce-eCCCCCHHHHHHHHHHHHH
Confidence 79999999999943667 999999888776654310 011 1346677778888888888
Q ss_pred HHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCC
Q 010538 346 INSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSG 425 (508)
Q Consensus 346 ~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~g 425 (508)
+.+ .+.+.+++.++++++.+.|+++ +++++ +.. ++++++.+++. .+..++.+.|.++|
T Consensus 295 ~~~--~~~~~~~~~~~~~~l~~~L~~~-------g~~~~-~~~--------~~~~~~~~~~~----~~~~~l~~~l~~~g 352 (401)
T 1fc4_A 295 VEA--GSELRDRLWANARQFREQMSAA-------GFTLA-GAD--------HAIIPVMLGDA----VVAQKFARELQKEG 352 (401)
T ss_dssp HHT--CHHHHHHHHHHHHHHHHHHHHT-------TCCBC-CSS--------SSEEEEEEECH----HHHHHHHHHHHHTT
T ss_pred Hhc--CHHHHHHHHHHHHHHHHHHHHc-------CCccc-CCC--------CCEEEEEcCCh----HHHHHHHHHHHHCC
Confidence 755 5788999999999999999886 45555 322 78999998642 22345888888899
Q ss_pred CeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 426 IQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 426 I~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
|.+++|..|..+. ..+++|++++.++|.+|++++++.|+++++.+
T Consensus 353 i~v~~~~~~~~~~--------------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 397 (401)
T 1fc4_A 353 IYVTGFFYPVVPK--------------------------------GQARIRTQMSAAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp EECCEECTTSSCT--------------------------------TCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cEEeeecCCCCCC--------------------------------CCceEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999886553321 15789999999999999999999999887654
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-29 Score=258.53 Aligned_cols=326 Identities=15% Similarity=0.105 Sum_probs=239.1
Q ss_pred CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeE
Q 010538 52 YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSY 131 (508)
Q Consensus 52 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~v 131 (508)
+++.+.+++.+.+. .. .+....+..........+++++.+++++|. + ++++|+|+|+|+.+++.++ ..+|++|
T Consensus 58 ~~~~v~~a~~~~~~-~~-~~~~~~~~~~~g~~~~~~~l~~~la~~~g~--~--~v~~~~ggt~a~~~~~~~~-~~~gd~V 130 (398)
T 3a2b_A 58 TDTRIIKAAQDALE-KY-GTGCAGSRFLNGTLDIHVELEEKLSAYVGK--E--AAILFSTGFQSNLGPLSCL-MGRNDYI 130 (398)
T ss_dssp GCHHHHHHHHHHHH-HH-CSCCCSBTTTTCCCHHHHHHHHHHHHHHTC--S--EEEEESSHHHHHHHHHHHS-SCTTCEE
T ss_pred CCHHHHHHHHHHHH-Hc-CCCCCCcCcccCCcHHHHHHHHHHHHHhCC--C--cEEEECCHHHHHHHHHHHH-hCCCCEE
Confidence 67778777755442 21 111111222222356788899999999997 4 7999999999999999998 6889999
Q ss_pred EEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCC
Q 010538 132 MYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSEC 211 (508)
Q Consensus 132 l~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~ 211 (508)
+++...|+++.... +..|.+++.+|.. |+++++ +++++.. .+++++|++++++
T Consensus 131 ~~~~p~~~~~~~~~---~~~g~~~~~v~~~--------------------d~~~l~--~~l~~~~--~~~~~~v~~~~~~ 183 (398)
T 3a2b_A 131 LLDERDHASIIDGS---RLSFSKVIKYGHN--------------------NMEDLR--AKLSRLP--EDSAKLICTDGIF 183 (398)
T ss_dssp EEETTCCHHHHHHH---HHSSSEEEEECTT--------------------CHHHHH--HHHHTSC--SSSCEEEEEESBC
T ss_pred EECCccCHHHHHHH---HHcCCceEEeCCC--------------------CHHHHH--HHHHhhc--cCCceEEEEeCCC
Confidence 99998888776554 4469999998862 345555 4442210 1268999999999
Q ss_pred CCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC---CCCCCC-C----CCcEEEEeccccccCCCcc
Q 010538 212 NFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ---PPDLSK-Y----PVDFVVMSFYKIFGYPTGL 283 (508)
Q Consensus 212 n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~---~~d~~~-~----~~D~~~~S~~K~~g~P~G~ 283 (508)
||||.+.|+++|.++|++ +|+++|+|++|+.+.. ..++.+ . ++|+++.|+||+++ |.|
T Consensus 184 nptG~~~~~~~l~~~~~~------------~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~G- 249 (398)
T 3a2b_A 184 SMEGDIVNLPELTSIANE------------FDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLA-SLG- 249 (398)
T ss_dssp TTTCCBCCHHHHHHHHHH------------HTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTC-SSC-
T ss_pred CCCCCccCHHHHHHHHHH------------cCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEeccccccc-CCC-
Confidence 999999999999999998 8999999999986632 222211 1 36999999999999 888
Q ss_pred eEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 010538 284 GALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGM 363 (508)
Q Consensus 284 G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~ 363 (508)
|++++++++++.+.+.... ....++++..+.+++.++++.+.. +++++++++++++
T Consensus 250 G~~~~~~~~~~~l~~~~~~----------------------~~~~~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~ 305 (398)
T 3a2b_A 250 GFVAGDADVIDFLKHNARS----------------------VMFSASMTPASVASTLKALEIIQN--EPEHIEKLWKNTD 305 (398)
T ss_dssp EEEEECHHHHHHHHHHCHH----------------------HHSSBCCCHHHHHHHHHHHHHHHH--CTHHHHHHHHHHH
T ss_pred cEEEeCHHHHHHHHHhccc----------------------ceecCCCCHHHHHHHHHHHHHHhh--CHHHHHHHHHHHH
Confidence 9999998887766543100 012244556666566677776543 5788899999999
Q ss_pred HHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhc
Q 010538 364 YVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYL 443 (508)
Q Consensus 364 ~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~ 443 (508)
++.+.|+++ +++++.+. ++++++.++.. .+..++.+.|.++||.+++|..|..+.
T Consensus 306 ~l~~~L~~~-------g~~~~~~~---------g~~~~~~~~~~----~~~~~l~~~l~~~gi~v~~~~~~~~~~----- 360 (398)
T 3a2b_A 306 YAKAQLLDH-------GFDLGATE---------SPILPIFIRSN----EKTFWVTKMLQDDGVFVNPVVSPAVPA----- 360 (398)
T ss_dssp HHHHHHHHT-------TCCBCSCC---------SSEEEEECCCH----HHHHHHHHHHHHTTEECEEECTTTSCG-----
T ss_pred HHHHHHHhc-------CCCcCCCC---------CCEEEEEcCCH----HHHHHHHHHHHHCCcEEEeeCCCCCCC-----
Confidence 999999886 45554321 68888887531 233457888888899999987664321
Q ss_pred CCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 444 GLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 444 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
..+++|+|++.++|.+|++++++.|+++++.
T Consensus 361 ---------------------------~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~ 391 (398)
T 3a2b_A 361 ---------------------------EESLIRFSLMATHTYDQIDEAIEKMVKVFKQ 391 (398)
T ss_dssp ---------------------------GGCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------CCceEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 2578999999999999999999999988754
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-29 Score=256.62 Aligned_cols=351 Identities=10% Similarity=0.074 Sum_probs=251.7
Q ss_pred chHHHHHHhhccCCCCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC--CCC
Q 010538 25 SIDQIRATEFKRLENGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN--ASM 101 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~--~~~ 101 (508)
.|+...+ +|.. ++.+.|..+... ++++.+.+++.+.+ .. ....+.. ....+.+++++.+++++| +++
T Consensus 21 ~~d~~~~-~~~~--~~~i~l~~~~~~~~~~~~v~~a~~~~~-~~----~~~~y~~--~~~~~~~~l~~~l~~~~g~~~~~ 90 (391)
T 4dq6_A 21 KWSEMEK-KYGT--NDLLPMWVADMDFKAAPCIIDSLKNRL-EQ----EIYGYTT--RPDSYNESIVNWLYRRHNWKIKS 90 (391)
T ss_dssp HHHCHHH-HHSC--SCSEECCSSSCSSCCCHHHHHHHHHHH-TT----CCCCCBC--CCHHHHHHHHHHHHHHHCCCCCG
T ss_pred eeeeccc-ccCC--CCceeccccCCCCCCCHHHHHHHHHHH-hC----CCCCCCC--CCHHHHHHHHHHHHHHhCCCCcH
Confidence 3666665 6752 678999987655 44677777765544 22 1111221 235677889999999999 667
Q ss_pred CCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccC--CccCcccccccccccccc
Q 010538 102 KDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVE--EAVDNDGLSESLVTSTKI 179 (508)
Q Consensus 102 ~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~--~~~~~~~l~~~~~~~~~~ 179 (508)
+ +|++|+|+|+|+++++.++ .++|++|+++...|+++.. .++..|.+++.+|.+ .++..
T Consensus 91 ~--~v~~~~g~~~a~~~~~~~~-~~~gd~vl~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~------------- 151 (391)
T 4dq6_A 91 E--WLIYSPGVIPAISLLINEL-TKANDKIMIQEPVYSPFNS---VVKNNNRELIISPLQKLENGNY------------- 151 (391)
T ss_dssp G--GEEEESCHHHHHHHHHHHH-SCTTCEEEECSSCCTHHHH---HHHHTTCEEEECCCEECTTSCE-------------
T ss_pred H--HeEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCCHHHHH---HHHHcCCeEEeeeeeecCCCce-------------
Confidence 7 8999999999999999998 6789999998877776554 445579999999987 33321
Q ss_pred ccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----C
Q 010538 180 SLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----V 255 (508)
Q Consensus 180 ~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g 255 (508)
..|+++++ +++ .+ +++|++++++||||.++|.+.+.++++ +|+++|+++|+|++|+. |
T Consensus 152 ~~d~~~l~--~~l------~~-~~~v~i~~p~nptG~~~~~~~l~~i~~---------~~~~~~~~li~De~~~~~~~~g 213 (391)
T 4dq6_A 152 IMDYEDIE--NKI------KD-VKLFILCNPHNPVGRVWTKDELKKLGD---------ICLKHNVKIISDEIHSDIILKK 213 (391)
T ss_dssp ECCHHHHH--HHC------TT-EEEEEEESSBTTTTBCCCHHHHHHHHH---------HHHHTTCEEEEECTTTTCBCTT
T ss_pred EeeHHHHH--HHh------hc-CCEEEEECCCCCCCcCcCHHHHHHHHH---------HHHHcCCEEEeeccccccccCC
Confidence 12688888 555 34 899999999999999987666665544 34459999999999986 3
Q ss_pred CCCCCCCCCCCc-----EEEEeccccccCCCc--ceEEEEec-hhHhhhccccccCceEEecccchhhhhhccCcccccc
Q 010538 256 TQPPDLSKYPVD-----FVVMSFYKIFGYPTG--LGALIMRN-DAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFE 327 (508)
Q Consensus 256 ~~~~d~~~~~~D-----~~~~S~~K~~g~P~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (508)
..+.++...+.| +++.|+||++| ++| +|++++++ ++.+.+.... ....
T Consensus 214 ~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~~~~~~~~~~~~~-----------------------~~~~ 269 (391)
T 4dq6_A 214 HKHIPMASISKEFEKNTITCMAPTKTFN-IAGLQSSYVVLPDEKDYKLLDDAF-----------------------TRID 269 (391)
T ss_dssp CCCCCGGGSCHHHHHTEEEEECSHHHHT-CGGGCCEEEECCSHHHHHHHHHHH-----------------------HHTT
T ss_pred CCccCHHHcCccccCcEEEEEechhhcc-CcccceEEEEeCCHHHHHHHHHHH-----------------------Hhhc
Confidence 334455444333 88999999987 445 79999886 6666554431 1112
Q ss_pred CCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhc-ccCCCCCceEEEecCCCCCcccCCCCceEEEEeeC
Q 010538 328 DGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLS-LRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKR 406 (508)
Q Consensus 328 ~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 406 (508)
.++++...++++.++++...+ .++++.++++++++++.+.|++ + ++++++.+.. +.++++.++.
T Consensus 270 ~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~------~~~~~~~~~~--------~~~~~~~~~~ 334 (391)
T 4dq6_A 270 IKRNNCFSLVATEASYNNGES-WLESFLEYLESNIDFAIKYINENM------PKLKVRKPEG--------TYLLWVDFSA 334 (391)
T ss_dssp CCCCCHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHHHC------TTSEECCCSB--------SSEEEEECGG
T ss_pred CCCCCHHHHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHHHhhC------CCCEecCCCc--------cEEEEEEhhh
Confidence 346677777777777765322 3688889999999999999987 5 3688776543 5566688764
Q ss_pred CCCCccCHHHHHHHHhhC-CCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCH
Q 010538 407 PDGSWFGYREVEKLASLS-GIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTF 485 (508)
Q Consensus 407 ~~~~~~~~~~l~~~L~~~-gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ 485 (508)
.. .+..++.+.|.++ ||.+++|..|... .++++|+|++ ++.
T Consensus 335 ~~---~~~~~~~~~l~~~~gi~v~~g~~~~~~---------------------------------~~~~iRis~~--~~~ 376 (391)
T 4dq6_A 335 LG---LSDEELESILVQKGKVALNQGNSFGIG---------------------------------GSGYQRINLA--CPR 376 (391)
T ss_dssp GC---CCHHHHHHHHHHTTCEECEEGGGGCTT---------------------------------CTTEEEEECC--SCH
T ss_pred cC---CCHHHHHHHHHHhCCEEeeCchhhCCC---------------------------------CCCeEEEEEc--CCH
Confidence 21 2345688888877 9999998765432 2589999999 699
Q ss_pred HHHHHHHHhhhhhh
Q 010538 486 EDAKVNRCSSFDFV 499 (508)
Q Consensus 486 eev~~l~~~~~~~~ 499 (508)
++++++++.|++.+
T Consensus 377 ~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 377 SMLEEALIRIKNAI 390 (391)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998765
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-28 Score=255.40 Aligned_cols=339 Identities=12% Similarity=-0.002 Sum_probs=246.8
Q ss_pred CeeeeCCCCC----CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHH
Q 010538 41 TVYLDHAGAT----LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAAL 116 (508)
Q Consensus 41 ~iyld~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al 116 (508)
.-|+|.++.. .+++.+++++.+.+.....+.+.+... ........++++.+++++|++ +.++++++++|+
T Consensus 64 ~~~id~~~~~~lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~--~G~~~~~~~l~~~la~~~g~~----~~i~~~sGs~a~ 137 (427)
T 2w8t_A 64 KDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTCGSRML--NGTFHDHMEVEQALRDFYGTT----GAIVFSTGYMAN 137 (427)
T ss_dssp EEEEECSCCCTTCGGGCHHHHHHHHHHHHHHCSCCCSCTTT--TCCCHHHHHHHHHHHHHHTCS----EEEEESCHHHHH
T ss_pred ceEEEEECcccccCCCCHHHHHHHHHHHHHhCCCCcccccc--cCCcHHHHHHHHHHHHHhCCC----ceEEecCcHHHH
Confidence 3355555543 257888887765443211122222211 223466788999999999985 345555666799
Q ss_pred HHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCC
Q 010538 117 KLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERD 196 (508)
Q Consensus 117 ~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~ 196 (508)
..++.++ .++|+.|+++...|+++...++ ..|.+++.+|.. |+++++ +++++.
T Consensus 138 ~~al~~l-~~~gd~vl~~~~~h~~~~~~~~---~~g~~~~~~~~~--------------------d~~~le--~~l~~~- 190 (427)
T 2w8t_A 138 LGIISTL-AGKGEYVILDADSHASIYDGCQ---QGNAEIVRFRHN--------------------SVEDLD--KRLGRL- 190 (427)
T ss_dssp HHHHHHH-SCTTCEEEEETTCCHHHHHHHH---HSCSEEEEECTT--------------------CHHHHH--HHHHTS-
T ss_pred HHHHHHh-cCCCCEEEECCcccHHHHHHHH---HcCCeeEEeCCC--------------------CHHHHH--HHHHhc-
Confidence 8888888 6789999999999988776544 458898888742 355555 444321
Q ss_pred CCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCC---------CCCCCCCCc
Q 010538 197 PAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQP---------PDLSKYPVD 267 (508)
Q Consensus 197 ~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~---------~d~~~~~~D 267 (508)
...++++|++++++|+||.+.|+++|.++|++ +|+++|+|++|+.+... +++. .++|
T Consensus 191 -~~~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~------------~g~~li~Dea~~~~~~~~~g~~~~~~~~~~-~~~d 256 (427)
T 2w8t_A 191 -PKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKK------------HGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQID 256 (427)
T ss_dssp -CSSSCEEEEEESEETTTTEECCHHHHHHHHHH------------TTCEEEEECTTTTTTSSTTSCCHHHHTTCT-TCCS
T ss_pred -cCCCCeEEEEcCCCCCCCCccCHHHHHHHHHH------------cCCEEEEECCccccccCCCCCchHhhcCCC-cCCc
Confidence 01278999999999999999999999999998 99999999999987654 4443 3689
Q ss_pred EEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH
Q 010538 268 FVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN 347 (508)
Q Consensus 268 ~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~ 347 (508)
++++|+||++| +.| |++++++++++.+.+... .. ...++.+..+++++.++++.+.
T Consensus 257 i~~~s~sK~~g-~~g-G~v~~~~~l~~~l~~~~~---------------------~~-~~~~~~~~~~~aa~~~al~~~~ 312 (427)
T 2w8t_A 257 FVVGTFSKSVG-TVG-GFVVSNHPKFEAVRLACR---------------------PY-IFTASLPPSVVATATTSIRKLM 312 (427)
T ss_dssp EEEEESSSTTC-SCC-EEEEECCTTGGGGGGTCH---------------------HH-HSSCCCCHHHHHHHHHHHHHHT
T ss_pred EEEecchhhhc-cCC-CEEEeCHHHHHHHHHhcc---------------------cc-cccCCCCHHHHHHHHHHHHHHh
Confidence 99999999999 777 999999888766654310 00 1135677777888888888865
Q ss_pred hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCe
Q 010538 348 SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQ 427 (508)
Q Consensus 348 ~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~ 427 (508)
+ ++++++++.++++++.+.|+++ ++++..++. .++++++.+++. .+..++.+.|.++||.
T Consensus 313 ~--~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~-------~~~~~~~~~~~~----~~~~~l~~~L~~~Gi~ 372 (427)
T 2w8t_A 313 T--AHEKRERLWSNARALHGGLKAM-------GFRLGTETC-------DSAIVAVMLEDQ----EQAAMMWQALLDGGLY 372 (427)
T ss_dssp S--CHHHHHHHHHHHHHHHHHHHHH-------TCEESCSSC-------CSSEEEEEESSH----HHHHHHHHHHHHTTEE
T ss_pred c--CHHHHHHHHHHHHHHHHHHHHc-------CCcccCCCC-------CCCEEEEEECCH----HHHHHHHHHHHHCCeE
Confidence 3 6889999999999999999886 577764431 168899988642 1234578888888999
Q ss_pred eccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 428 LRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 428 v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
++++..|..+. ..+.+|++++.++|.+|++++++.|+++++.+
T Consensus 373 v~~~~~~~~~~--------------------------------~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~ 415 (427)
T 2w8t_A 373 VNMARPPATPA--------------------------------GTFLLRCSICAEHTPAQIQTVLGMFQAAGRAV 415 (427)
T ss_dssp CEEECTTTSCT--------------------------------TCEEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EeeeCCCCCCC--------------------------------CCeEEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99876554321 25789999999999999999999999887543
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-29 Score=260.03 Aligned_cols=356 Identities=11% Similarity=0.021 Sum_probs=242.8
Q ss_pred CCCeeeeCCCCCCC-CHHHHHHHHHHhhccc-cCCCCCccchhhhhhHHHHHHHHHHHHHcC------CCCCCceEEEcC
Q 010538 39 NGTVYLDHAGATLY-SELQMEAIFRDFTTNV-YGNPHSQSDISLATCDIVRAAREQVLDYFN------ASMKDYKCIFTS 110 (508)
Q Consensus 39 ~~~iyld~~~~~~~-~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------~~~~~~~i~~t~ 110 (508)
++++.|+.+....+ ++.+.+++.+.+.... ...+. . ....++|+.++++++ ++++ +|++|+
T Consensus 44 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-----~----~g~~~lr~~la~~~~~~~g~~~~~~--~i~~t~ 112 (437)
T 3g0t_A 44 TKFCRMEMGVPGLPAPQIGIETEIQKLREGVASIYPN-----L----DGLPELKQEASRFAKLFVNIDIPAR--ACVPTV 112 (437)
T ss_dssp CCCEECCCCSCCSCCCHHHHHHHHHHHHHTGGGSCCC-----T----TCCHHHHHHHHHHHHHHHCCCCCGG--GEEEES
T ss_pred CCEEeccCcCCCCCCCHHHHHHHHHHHhCCcCcCCCC-----C----CChHHHHHHHHHHHHHhhCCCCCcc--cEEEeC
Confidence 57899988775544 6667776655443211 11111 1 112455666666666 5666 899999
Q ss_pred ChHHHHHHHHhhcC-CCCCC--eEEEecccccchHHHHHHHHhcCCeEEEEccCCcc-Cccccccccccccccccchhhh
Q 010538 111 GATAALKLVGEAFP-WSHQS--SYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAV-DNDGLSESLVTSTKISLLPIQR 186 (508)
Q Consensus 111 g~t~al~~~~~~l~-~~~g~--~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~-~~~~l~~~~~~~~~~~~d~~~l 186 (508)
|+|+|+++++.++. .++|+ +|+++...|+++.. .++..|.+++.+|++.++ .+ |++++
T Consensus 113 g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~---~~~~~g~~~~~v~~~~~~~~~---------------d~~~l 174 (437)
T 3g0t_A 113 GSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKL---QCRILGQKFESFDLFEYRGEK---------------LREKL 174 (437)
T ss_dssp HHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHH---HHHHHTCCCEEEEGGGGCTTH---------------HHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHH---HHHHcCCEEEEEeecCCCCcc---------------CHHHH
Confidence 99999999999983 17888 99988766665544 444569999999986433 23 67888
Q ss_pred hcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCC----CCCC---
Q 010538 187 RKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCV----TQPP--- 259 (508)
Q Consensus 187 ~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g----~~~~--- 259 (508)
+ ++++ ++++++|++++++||||.++|.+++.++++ +|+++|+++|+|++|+.. ..++
T Consensus 175 ~--~~l~-----~~~~~~v~l~~p~nptG~~~~~~~l~~i~~---------~a~~~~~~li~De~~~~~~~~~~~~~~~~ 238 (437)
T 3g0t_A 175 E--SYLQ-----TGQFCSIIYSNPNNPTWQCMTDEELRIIGE---------LATKHDVIVIEDLAYFGMDFRKDYSHPGE 238 (437)
T ss_dssp H--HHHT-----TTCCCEEEEESSCTTTCCCCCHHHHHHHHH---------HHHHTTCEEEEECTTTTCCTTSCCCSTTS
T ss_pred H--HHHh-----cCCceEEEEeCCCCCCCCcCCHHHHHHHHH---------HHHHCCcEEEEEcchhhcccCCCcCcccc
Confidence 8 5542 457899999999999999999666555444 344499999999999752 2222
Q ss_pred -----CCCC-CCCcEEEEeccccccCCCc--ceEEEEechhHh-hhccccccCceEEecccchhhhhhccCccccccCCC
Q 010538 260 -----DLSK-YPVDFVVMSFYKIFGYPTG--LGALIMRNDAAK-LLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGT 330 (508)
Q Consensus 260 -----d~~~-~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt 330 (508)
++.. .+.++++.|+||++| ++| +|++++++++++ .+.....+.+.... ...+. ........++
T Consensus 239 ~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~ 310 (437)
T 3g0t_A 239 PLYQPSVANYTDNYILALSSSKAFS-YAGQRIGVLMISGKLYEREYPDLEESFGRLRF---GEALS----SSALYALSSG 310 (437)
T ss_dssp SCCCCCGGGTCSCEEEEEESTTTTS-CGGGCCEEEEECHHHHHCBCGGGHHHHSCSBH---HHHHH----TTHHHHHHSS
T ss_pred cchhhccCCCCCcEEEEEcCccCCC-CccceeEEEEECHHHhhhhhhcccccccccch---hHHHH----HHHHhhhcCC
Confidence 3322 467799999999998 556 899999988876 52211110000000 00000 0011222356
Q ss_pred CChhHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEe------cCCCCCcccCCCCceEEE
Q 010538 331 ASFLSIASIRHGFNLINSL--TVPAICRHIASLGMYVRKVLLSLRHENGADVCTIY------GTYTSEVSYHDTGSMVSF 402 (508)
Q Consensus 331 ~~~~~~~~l~~al~~~~~~--g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~v~~ 402 (508)
++....+++.++++..... .++.+.+++.++++++.+.|+++ +++++ .++. .+.++++
T Consensus 311 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~~~~~~~-------~~~~~~~ 376 (437)
T 3g0t_A 311 ATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDN-------GFNIVYDKDGNEPLA-------DGFYFTV 376 (437)
T ss_dssp SCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT-------TEEESSCEETTEECC-------SSSEEEE
T ss_pred CCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCEEeccccCCCCCc-------eeEEEEE
Confidence 6777777777777764421 27899999999999999999987 68877 3312 2788898
Q ss_pred EeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC
Q 010538 403 NLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM 482 (508)
Q Consensus 403 ~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 482 (508)
.+++ .+..++.+.|.++||.+++|..|... .++++|||++ +
T Consensus 377 ~~~~-----~~~~~l~~~L~~~gi~v~~~~~~~~~---------------------------------~~~~iRis~~-~ 417 (437)
T 3g0t_A 377 GYKG-----MDSSKLIEKFVRYGMCAITLKTTGSK---------------------------------RNEAMRICTS-L 417 (437)
T ss_dssp EETT-----CCHHHHHHHHHHTTEECEESTTTTCC---------------------------------CTTCEEEECS-S
T ss_pred ecCC-----CCHHHHHHHHHHcCeEEeeccccCCC---------------------------------CCCEEEEEEe-c
Confidence 8873 34456888998999999998766432 1378999999 4
Q ss_pred CCHHHHHHHHHhhhhhhh
Q 010538 483 STFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 483 ~t~eev~~l~~~~~~~~~ 500 (508)
.|.+|+++++++|+++++
T Consensus 418 ~~~e~i~~~~~~l~~~~~ 435 (437)
T 3g0t_A 418 LPESQFPDLEKRLQMLNA 435 (437)
T ss_dssp SCGGGHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 599999999999998764
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-29 Score=255.70 Aligned_cols=337 Identities=14% Similarity=0.078 Sum_probs=239.8
Q ss_pred CCCeeeeCCCCC----CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHH
Q 010538 39 NGTVYLDHAGAT----LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATA 114 (508)
Q Consensus 39 ~~~iyld~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~ 114 (508)
++..|+|.+++. ++++.+.+++.+.+......++.+.+..+ ......++++.+++++|++ + .+++++ +|+
T Consensus 37 ~g~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g--~~~~~~~l~~~la~~~g~~-~--~i~~~s-Gt~ 110 (384)
T 1bs0_A 37 DDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSG--YSVVHQALEEELAEWLGYS-R--ALLFIS-GFA 110 (384)
T ss_dssp TTEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTC--CCHHHHHHHHHHHHHHTCS-E--EEEESC-HHH
T ss_pred CCceEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccC--ChHHHHHHHHHHHHHhCCC-c--EEEeCC-cHH
Confidence 456688877743 35777877765544221111222222212 2456788999999999985 3 455544 589
Q ss_pred HHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCC
Q 010538 115 ALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 115 al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
++.+++.++ .++|+.|+++...|+++...+ +..|.+++.+|.. |+++++ +.+++
T Consensus 111 a~~~~~~~~-~~~gd~v~~~~~~~~~~~~~~---~~~g~~~~~~~~~--------------------d~~~l~--~~l~~ 164 (384)
T 1bs0_A 111 ANQAVIAAM-MAKEDRIAADRLSHASLLEAA---SLSPSQLRRFAHN--------------------DVTHLA--RLLAS 164 (384)
T ss_dssp HHHHHHHHH-CCTTCEEEEETTCCHHHHHHH---HTSSSEEEEECTT--------------------CHHHHH--HHHHS
T ss_pred HHHHHHHHh-CCCCcEEEEcccccHHHHHHH---HHcCCCEEEeCCC--------------------CHHHHH--HHHHh
Confidence 999999988 678899999998888766544 4469999988842 244555 44322
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCC---CC---CCCCCCcE
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQP---PD---LSKYPVDF 268 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~---~d---~~~~~~D~ 268 (508)
..+++++|++++++||||.++|+++|.++|++ +|+++|+|++|+.+... .. ....+.|+
T Consensus 165 ---~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di 229 (384)
T 1bs0_A 165 ---PCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQ------------HNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPEL 229 (384)
T ss_dssp ---CCSSCEEEEEESBCTTTCCBCCHHHHHHHHHH------------TTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSE
T ss_pred ---cCCCCeEEEEeCCCCCCCCccCHHHHHHHHHH------------cCcEEEEECCcccceecCCCCchHHhcCCCCcE
Confidence 12347999999999999999999999999998 99999999999876532 11 11135799
Q ss_pred EEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHh
Q 010538 269 VVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINS 348 (508)
Q Consensus 269 ~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~ 348 (508)
++.|+||+++ |.| |++++++++++.+.+.... | ...++++...++++.++++.+.+
T Consensus 230 ~~~s~sK~~~-~~G-G~~~~~~~~~~~l~~~~~~------------~----------~~~~~~~~~~~~~~~~al~~~~~ 285 (384)
T 1bs0_A 230 LVVTFGKGFG-VSG-AAVLCSSTVADYLLQFARH------------L----------IYSTSMPPAQAQALRASLAVIRS 285 (384)
T ss_dssp EEEESSSTTS-SCC-EEEEECHHHHHHHHHHCHH------------H----------HSSBCCCHHHHHHHHHHHHHHHS
T ss_pred EEeeccchhh-ccC-cEEEeCHHHHHHHHHhchh------------h----------hcCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999 888 9999998887765542100 0 01124677777777888887753
Q ss_pred cChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCee
Q 010538 349 LTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQL 428 (508)
Q Consensus 349 ~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v 428 (508)
...+++.++++++++++.+.|+++ ++++.. .. ++++++.++.. .+..++.+.|.++||.+
T Consensus 286 ~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~-~~--------~~~~~~~~~~~----~~~~~l~~~l~~~gi~v 345 (384)
T 1bs0_A 286 DEGDARREKLAALITRFRAGVQDL-------PFTLAD-SC--------SAIQPLIVGDN----SRALQLAEKLRQQGCWV 345 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS-------SCEECS-CC--------SSBCCEEEESH----HHHHHHHHHHHHTTEEC
T ss_pred cccHHHHHHHHHHHHHHHHHHHhc-------CCcccC-CC--------CCEEEEEeCCH----HHHHHHHHHHHHCCcEE
Confidence 235788999999999999999886 466653 22 67788887631 22345888888899999
Q ss_pred ccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 429 RTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 429 ~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
++|..+..+. ..+++|++++.++|.+|+++++++|+++
T Consensus 346 ~~~~~~~~~~--------------------------------~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 346 TAIRPPTVPA--------------------------------GTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp CEECTTSSCT--------------------------------TCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred EeecCCCCCC--------------------------------CCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 9876432111 2578999999999999999999998764
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-28 Score=252.15 Aligned_cols=346 Identities=12% Similarity=0.093 Sum_probs=241.2
Q ss_pred hHHHHHHhhccCCCCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc----C--
Q 010538 26 IDQIRATEFKRLENGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF----N-- 98 (508)
Q Consensus 26 ~~~~r~~~f~~~~~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~-- 98 (508)
+..+.+ .+... ++.++|+.+.... +++.+.+++.+.+.... ..|..... ..++++.+++++ |
T Consensus 15 ~~~~~~-~~~~~-~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-----~~y~~~~g----~~~l~~~la~~~~~~~g~~ 83 (389)
T 1gd9_A 15 IRKLFD-IAAGM-KDVISLGIGEPDFDTPQHIKEYAKEALDKGL-----THYGPNIG----LLELREAIAEKLKKQNGIE 83 (389)
T ss_dssp HHHHHH-HHHTC-SSCEECCCCSCSSCCCHHHHHHHHHHHHTTC-----CSCCCTTC----CHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHH-HHhhh-cCeEecCCCCCCCCCCHHHHHHHHHHHhCCC-----CCCCCCCC----cHHHHHHHHHHHHHHhCCC
Confidence 444444 44444 5789999887653 56777777655442211 11221111 234555555555 8
Q ss_pred CCCCCce-EEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc--cCcccccccccc
Q 010538 99 ASMKDYK-CIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA--VDNDGLSESLVT 175 (508)
Q Consensus 99 ~~~~~~~-i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~--~~~~~l~~~~~~ 175 (508)
++++ + |++|+|+++|+.+++.++ ..+|++|+++...|+++.... +..|.+++.+|.+.. ..+
T Consensus 84 ~~~~--~~v~~~~g~~~a~~~~~~~~-~~~gd~vl~~~~~~~~~~~~~---~~~g~~~~~v~~~~~~~~~~--------- 148 (389)
T 1gd9_A 84 ADPK--TEIMVLLGANQAFLMGLSAF-LKDGEEVLIPTPAFVSYAPAV---ILAGGKPVEVPTYEEDEFRL--------- 148 (389)
T ss_dssp CCTT--TSEEEESSTTHHHHHHHTTT-CCTTCEEEEEESCCTTHHHHH---HHHTCEEEEEECCGGGTTCC---------
T ss_pred CCCC--CeEEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCchhHHHHH---HHCCCEEEEeccCCccCCCC---------
Confidence 4666 7 999999999999999998 678899999998888876554 345999999998742 223
Q ss_pred ccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC---HHHHHHHHcCCccccccCCCCCCCeEEEEeccc
Q 010538 176 STKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN---LDLINIMKKNPERILEISPFSKGRWMVLIDAAK 252 (508)
Q Consensus 176 ~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~---i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~ 252 (508)
|+++++ +++ .+++++|++++++||||.++| +++|.++|++ +|+++|+|++|
T Consensus 149 ------d~~~l~--~~l------~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~------------~~~~li~De~~ 202 (389)
T 1gd9_A 149 ------NVDELK--KYV------TDKTRALIINSPCNPTGAVLTKKDLEEIADFVVE------------HDLIVISDEVY 202 (389)
T ss_dssp ------CHHHHH--HHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH------------TTCEEEEECTT
T ss_pred ------CHHHHH--Hhc------CcCceEEEEECCCCCCCcCCCHHHHHHHHHHHHH------------cCCEEEEehhh
Confidence 678888 555 346899999999999999997 5555555655 99999999999
Q ss_pred cCCCC----CCCCCC----CCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCc
Q 010538 253 GCVTQ----PPDLSK----YPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGV 322 (508)
Q Consensus 253 ~~g~~----~~d~~~----~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~ 322 (508)
+.+.. +.++.. .+.|+++.|+||++| ++| +|++++++++++.+.+...++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~~~~------------------- 262 (389)
T 1gd9_A 203 EHFIYDDARHYSIASLDGMFERTITVNGFSKTFA-MTGWRLGFVAAPSWIIERMVKFQMYN------------------- 262 (389)
T ss_dssp TTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTT-CGGGCCEEEECCHHHHHHHHHHHTTT-------------------
T ss_pred hhcccCCCCCCCHhhccCCCCCEEEEecChhhcC-CcccceEEEEECHHHHHHHHHHHhhh-------------------
Confidence 87543 233332 357899999999998 667 799999988877665432111
Q ss_pred cccccCCCCChhHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEE
Q 010538 323 EELFEDGTASFLSIASIRHGFNLINS-LTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVS 401 (508)
Q Consensus 323 ~~~~~~gt~~~~~~~~l~~al~~~~~-~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 401 (508)
.++.+....+++.++++.... .+++++.+++.++++++.+.|+++ ++++..+.. +.+++
T Consensus 263 -----~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~--------~~~~~ 322 (389)
T 1gd9_A 263 -----ATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM-------GLPTVKPKG--------AFYIF 322 (389)
T ss_dssp -----TCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TCCCCCCCB--------TTEEC
T ss_pred -----ccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc-------CCeecCCCe--------eeEEE
Confidence 133455555555656653222 146888899999999999999886 465554432 55677
Q ss_pred EEeeCCCCCccCHHHHHHHHh-hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecC
Q 010538 402 FNLKRPDGSWFGYREVEKLAS-LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFG 480 (508)
Q Consensus 402 ~~~~~~~~~~~~~~~l~~~L~-~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~ 480 (508)
+.++... .+..++.+.|. ++||.+++|..|... ..+++|||++
T Consensus 323 ~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~~~~~---------------------------------~~~~iRi~~~ 366 (389)
T 1gd9_A 323 PRIRDTG---LTSKKFSELMLKEARVAVVPGSAFGKA---------------------------------GEGYVRISYA 366 (389)
T ss_dssp CBCGGGT---CCHHHHHHHHHHHTCEECEEGGGGCGG---------------------------------GTTBEEEECC
T ss_pred EeccCCC---CCHHHHHHHHHHhCCEEEeCchhhCCC---------------------------------CCCeEEEEec
Confidence 7775310 23455778876 899999998755431 1578999999
Q ss_pred CCCCHHHHHHHHHhhhhhhhh
Q 010538 481 YMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 481 ~~~t~eev~~l~~~~~~~~~~ 501 (508)
. +.++++++++.|+++++.
T Consensus 367 ~--~~~~i~~~l~~l~~~~~~ 385 (389)
T 1gd9_A 367 T--AYEKLEEAMDRMERVLKE 385 (389)
T ss_dssp S--CHHHHHHHHHHHHHHHHH
T ss_pred C--CHHHHHHHHHHHHHHHHh
Confidence 5 899999999999887654
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.6e-29 Score=253.83 Aligned_cols=324 Identities=13% Similarity=0.088 Sum_probs=234.1
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC------CCCCCceEEEcCC
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN------ASMKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------~~~~~~~i~~t~g 111 (508)
++.++|+.+.... +++.+.+++.+.+.... ..|.... ...++++.++++++ ++++ +|++|+|
T Consensus 29 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-----~~y~~~~----~~~~l~~~la~~~~~~~g~~~~~~--~v~~~~g 97 (370)
T 2z61_A 29 KKVIHLEIGEPDFNTPKPIVDEGIKSLKEGK-----THYTDSR----GILELREKISELYKDKYKADIIPD--NIIITGG 97 (370)
T ss_dssp CCCEECCCCSCSSCCCHHHHHHHHHHHHTTC-----CSCCCTT----CCHHHHHHHHHHHHHHSSCCCCGG--GEEEESS
T ss_pred CCEEEccCCCCCCCCCHHHHHHHHHHHHcCc-----cCCCCCC----CCHHHHHHHHHHHHHHhCCCCChh--hEEECCC
Confidence 5789999887754 46777777655442211 1121111 12445566666553 5666 8999999
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCC
Q 010538 112 ATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGAS 191 (508)
Q Consensus 112 ~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~ 191 (508)
+++|+.+++.++ .++|++|+++...|+++... ++..|.+++.+| + |+++++ ++
T Consensus 98 ~~~a~~~~~~~~-~~~gd~vl~~~p~~~~~~~~---~~~~g~~~~~v~------~---------------d~~~l~--~~ 150 (370)
T 2z61_A 98 SSLGLFFALSSI-IDDGDEVLIQNPCYPCYKNF---IRFLGAKPVFCD------F---------------TVESLE--EA 150 (370)
T ss_dssp HHHHHHHHHHHH-CCTTCEEEEESSCCTHHHHH---HHHTTCEEEEEC------S---------------SHHHHH--HH
T ss_pred hHHHHHHHHHHh-cCCCCEEEEeCCCchhHHHH---HHHcCCEEEEeC------C---------------CHHHHH--Hh
Confidence 999999999998 67889999999888876554 445699998888 2 467777 55
Q ss_pred CCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC---CCCCCC----C
Q 010538 192 FPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ---PPDLSK----Y 264 (508)
Q Consensus 192 l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~---~~d~~~----~ 264 (508)
+ .+++++|++++++||||.++|.+ |.++|++ +|+++|+|++|+.+.. +.++.. .
T Consensus 151 l------~~~~~~v~~~~p~nptG~~~~~~-l~~~~~~------------~~~~li~De~~~~~~~~g~~~~~~~~~~~~ 211 (370)
T 2z61_A 151 L------SDKTKAIIINSPSNPLGEVIDRE-IYEFAYE------------NIPYIISDEIYNGLVYEGKCYSAIEFDENL 211 (370)
T ss_dssp C------CSSEEEEEEESSCTTTCCCCCHH-HHHHHHH------------HCSEEEEECTTTTCBSSSCCCCGGGTCTTC
T ss_pred c------ccCceEEEEcCCCCCcCcccCHH-HHHHHHH------------cCCEEEEEcchhhcccCCCCcCHHHccCCC
Confidence 4 34789999999999999999999 9999997 8999999999986543 334332 3
Q ss_pred CCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHH
Q 010538 265 PVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHG 342 (508)
Q Consensus 265 ~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~a 342 (508)
+.|+++.|+||++| ++| +|++++++++++.+.+...+ ..++.+....+++.++
T Consensus 212 ~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~a~~~~ 266 (370)
T 2z61_A 212 EKTILINGFSKLYA-MTGWRIGYVISNDEIIEAILKLQQN------------------------LFISAPTISQYAALKA 266 (370)
T ss_dssp SSEEEEEESTTTTT-CGGGCCEEEECCHHHHHHHHHHHHH------------------------HTSSSCHHHHHHHGGG
T ss_pred CcEEEEecChhccC-CccceEEEEEECHHHHHHHHHHHhh------------------------cccCCCHHHHHHHHHH
Confidence 67899999999998 667 89999999887766543111 1234566666666666
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHh
Q 010538 343 FNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLAS 422 (508)
Q Consensus 343 l~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~ 422 (508)
++.+.+..++++.+++.++++++.+.|+++ +++++.+.. +.++++.+++ +..++.+.|.
T Consensus 267 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~--------~~~~~~~~~~------~~~~~~~~l~ 325 (370)
T 2z61_A 267 FEKETEREINSMIKEFDRRRRLVLKYVKDF-------GWEVNNPIG--------AYYVFPNIGE------DGREFAYKLL 325 (370)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TCBCCCCCB--------TTEECCBCSS------CHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHHc-------CCeecCCCc--------ceEEEEecCC------CHHHHHHHHH
Confidence 654123346788899999999999999886 455554432 5667767654 2345777775
Q ss_pred -hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 423 -LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 423 -~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
++||.+++|..|... ..+++|+|++ ++.++++++++.|+++++
T Consensus 326 ~~~gi~v~~g~~f~~~---------------------------------~~~~~Ri~~~--~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 326 KEKFVALTPGIGFGSK---------------------------------GKNYIRISYA--NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp HHHCEECEEGGGGCGG---------------------------------GSSBEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred HhCCEEEeCchhhCCC---------------------------------CCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 789999998655321 1578999999 699999999999887753
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=256.47 Aligned_cols=340 Identities=12% Similarity=0.024 Sum_probs=240.6
Q ss_pred CCCeeeeCCCCC-----CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC-----CCCCCceEEE
Q 010538 39 NGTVYLDHAGAT-----LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN-----ASMKDYKCIF 108 (508)
Q Consensus 39 ~~~iyld~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~-----~~~~~~~i~~ 108 (508)
+++|+|+.+... ++++.+.+++.+.+.... ...|.. .....++++.++++++ ++++ +|++
T Consensus 54 ~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~----~~~y~~----~~g~~~lr~~la~~~~~~~~~~~~~--~v~~ 123 (427)
T 3dyd_A 54 KTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGK----YNGYAP----SIGFLSSREEIASYYHCPEAPLEAK--DVIL 123 (427)
T ss_dssp SCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCC----SSSCCC----TTCCHHHHHHHHHHHCBTTBCCCGG--GEEE
T ss_pred CCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCc----CCCCCC----CCCcHHHHHHHHHHHhhcCCCCChH--HEEE
Confidence 356999988743 677888887755443211 111211 1225678899999998 6777 8999
Q ss_pred cCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhc
Q 010538 109 TSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRK 188 (508)
Q Consensus 109 t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~ 188 (508)
|+|+|+|+.+++.++ .++|++|+++...|+++. ..++..|++++.+|.+..... ..|+++++
T Consensus 124 t~g~t~al~~~~~~l-~~~gd~vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~~~-------------~~d~~~l~- 185 (427)
T 3dyd_A 124 TSGCSQAIDLCLAVL-ANPGQNILVPRPGFSLYK---TLAESMGIEVKLYNLLPEKSW-------------EIDLKQLE- 185 (427)
T ss_dssp ESSHHHHHHHHHHHH-CCTTCEEEEEESCCTHHH---HHHHHTTCEEEEEEEEGGGTT-------------EECHHHHH-
T ss_pred ecCcHHHHHHHHHHh-cCCCCEEEEcCCCchhHH---HHHHHcCCEEEEEecccccCC-------------CCCHHHHH-
Confidence 999999999999998 578899998876665544 455567999999988642221 12688999
Q ss_pred CCCCCCCCCCCCCceEEEEeCCCCCCccccC---HHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCCCCC
Q 010538 189 GASFPERDPAGDAYNLFAFPSECNFSGSRFN---LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQPPDL 261 (508)
Q Consensus 189 ~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~---i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d~ 261 (508)
+++ .+++++|++++++||||.++| +++|.++|++ +|+++|+|++|+. |....++
T Consensus 186 -~~l------~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~------------~~~~~i~Deay~~~~~~g~~~~~~ 246 (427)
T 3dyd_A 186 -YLI------DEKTACLIVNNPSNPCGSVFSKRHLQKILAVAAR------------QCVPILADEIYGDMVFSDCKYEPL 246 (427)
T ss_dssp -SSC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH------------TTCCEEEECTTTTCBCSSCCCCCG
T ss_pred -HHh------ccCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHH------------CCCEEEEEcCchhhccCCCcCccH
Confidence 665 456899999999999999999 6666666665 9999999999985 3333444
Q ss_pred CCCCCc---EEEEeccccccCCCc--ceEEEEec-------hhHhhhccccccCceEEecccchhhhhhccCccccccCC
Q 010538 262 SKYPVD---FVVMSFYKIFGYPTG--LGALIMRN-------DAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDG 329 (508)
Q Consensus 262 ~~~~~D---~~~~S~~K~~g~P~G--~G~l~~~~-------~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 329 (508)
...+.+ +++.|+||.|+ ++| +|++++++ ++.+.+... . ....
T Consensus 247 ~~~~~~~~vi~~~S~sK~~~-~~G~riG~~~~~~~~~~~~~~i~~~l~~~-----------------------~--~~~~ 300 (427)
T 3dyd_A 247 ATLSTDVPILSCGGLAKRWL-VPGWRLGWILIHDRRDIFGNEIRDGLVKL-----------------------S--QRIL 300 (427)
T ss_dssp GGGCSSCCEEEEEESTTTSS-CGGGCCEEEEEECSTTSSHHHHHHHHHHH-----------------------H--HHHC
T ss_pred HHhCCCCcEEEEeeccccCC-CcCcceEEEEecCcchhhHHHHHHHHHHH-----------------------H--hccC
Confidence 444443 77889999988 447 89999985 333332221 0 0124
Q ss_pred CCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCC-
Q 010538 330 TASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPD- 408 (508)
Q Consensus 330 t~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 408 (508)
+++....+++.++++......++++.+++.++++++.+.|+++ ++++++.+.. +.++++.++...
T Consensus 301 ~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------~g~~~~~p~~--------g~~~~~~l~~~~~ 366 (427)
T 3dyd_A 301 GPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAI------PGLRPVRPSG--------AMYLMVGIEMEHF 366 (427)
T ss_dssp CSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHS------TTEEEECCSB--------TTEEEEEECGGGC
T ss_pred CCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcC------CCceecCCCe--------eEEEEEecCHhhc
Confidence 5666667777777764333346888899999999999999987 4788776654 678888876210
Q ss_pred CCccCHHHHHHHH-hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHH
Q 010538 409 GSWFGYREVEKLA-SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFED 487 (508)
Q Consensus 409 ~~~~~~~~l~~~L-~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ee 487 (508)
....+..++.+.| +++||.+.+|..|.. ++++|||++ ++.++
T Consensus 367 ~~~~~~~~~~~~l~~~~gV~v~~g~~~~~-----------------------------------~~~iRis~~--~~~e~ 409 (427)
T 3dyd_A 367 PEFENDVEFTERLVAEQSVHCLPATCFEY-----------------------------------PNFIRVVIT--VPEVM 409 (427)
T ss_dssp TTCSSHHHHHHHHHHHHCEECEEGGGGTC-----------------------------------TTEEEEESC--SCHHH
T ss_pred CCCCCHHHHHHHHHHHCCEEEECCcccCC-----------------------------------CCeEEEEEC--CCHHH
Confidence 0012334466555 689999998865422 578999987 79999
Q ss_pred HHHHHHhhhhhhhhh
Q 010538 488 AKVNRCSSFDFVNFS 502 (508)
Q Consensus 488 v~~l~~~~~~~~~~~ 502 (508)
++++++.|.++++..
T Consensus 410 i~~~l~~l~~~l~~~ 424 (427)
T 3dyd_A 410 MLEACSRIQEFCEQH 424 (427)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887654
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-29 Score=255.01 Aligned_cols=333 Identities=11% Similarity=0.015 Sum_probs=237.3
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKL 118 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~ 118 (508)
++.+|||++..+++++.+.+++.+.. .. +. .+.......+++++++++++|++++ +|++|+|+|+|+.+
T Consensus 13 p~~i~l~~~~~~~~~~~v~~a~~~~~-~~-~~-------~~~g~~~~~~~~~~~l~~~~g~~~~--~v~~~~g~t~a~~~ 81 (359)
T 1svv_A 13 PKPYSFVNDYSVGMHPKILDLMARDN-MT-QH-------AGYGQDSHCAKAARLIGELLERPDA--DVHFISGGTQTNLI 81 (359)
T ss_dssp --CEECSCSCSSCCCHHHHHHHHHHT-TC-CC-------CSTTCSHHHHHHHHHHHHHHTCTTS--EEEEESCHHHHHHH
T ss_pred CeeEEecCCCcCCCCHHHHHHHHHHH-hh-cc-------ccccccHHHHHHHHHHHHHhCCCCc--cEEEeCCchHHHHH
Confidence 67999999999988999988876643 21 11 1112346688899999999999888 89999999999999
Q ss_pred HHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCC-CC
Q 010538 119 VGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPER-DP 197 (508)
Q Consensus 119 ~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~-~~ 197 (508)
++.++ .++|++|+++...|+++... ..++..|.+++.+|.+ +..+ |+++++ +++++. ..
T Consensus 82 ~~~~~-~~~gd~vl~~~~~~~~~~~~-~~~~~~g~~~~~v~~~-~~~~---------------d~~~l~--~~l~~~~~~ 141 (359)
T 1svv_A 82 ACSLA-LRPWEAVIATQLGHISTHET-GAIEATGHKVVTAPCP-DGKL---------------RVADIE--SALHENRSE 141 (359)
T ss_dssp HHHHH-CCTTEEEEEETTSHHHHSST-THHHHTTCCEEEECCT-TSCC---------------CHHHHH--HHHHHSCST
T ss_pred HHHHH-hCCCCEEEEcccchHHHHHH-HHHhcCCCeeEEEeCC-CCee---------------cHHHHH--HHHHHHHhc
Confidence 99998 67889999999888877553 1245579999999986 3334 577777 555321 01
Q ss_pred CCCCceEEEEeCCCCCCccccC---HHHHHHHHcCCccccccCCCCCCCeEEEEeccc---cCCCCCCCCCC----CCCc
Q 010538 198 AGDAYNLFAFPSECNFSGSRFN---LDLINIMKKNPERILEISPFSKGRWMVLIDAAK---GCVTQPPDLSK----YPVD 267 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~tG~~~~---i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~---~~g~~~~d~~~----~~~D 267 (508)
..+++++|+++++ |+||.++| +++|.++|++ +|+++|+|++| +.|..+.+... ...|
T Consensus 142 ~~~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~------------~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d 208 (359)
T 1svv_A 142 HMVIPKLVYISNT-TEVGTQYTKQELEDISASCKE------------HGLYLFLDGARLASALSSPVNDLTLADIARLTD 208 (359)
T ss_dssp TSCEEEEEEEESS-CTTSCCCCHHHHHHHHHHHHH------------HTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCS
T ss_pred cCCCceEEEEEcC-CCCceecCHHHHHHHHHHHHH------------hCCEEEEEccchhhhhcCCCcchhhhhhhhcCC
Confidence 1235899999998 79999999 6667777776 99999999999 65666655443 3579
Q ss_pred EEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH
Q 010538 268 FVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN 347 (508)
Q Consensus 268 ~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~ 347 (508)
++++|+||+++ |.|+|++++++++++.+.+....++. .+ ..+.....++. ..+.
T Consensus 209 ~~~~s~~K~g~-~~~~g~l~~~~~~~~~~~~~~~~~~~-------------------~~---~~~~~~~~~~~---~~l~ 262 (359)
T 1svv_A 209 MFYIGATKAGG-MFGEALIILNDALKPNARHLIKQRGA-------------------LM---AKGWLLGIQFE---VLMK 262 (359)
T ss_dssp EEEEECTTTTC-SSCEEEEECSGGGCTTHHHHHHHTTC-------------------CC---TTTHHHHHHHH---HHTS
T ss_pred EEEEecccCCC-CCceEEEEEcccHHHHHHHHHhcCCc-------------------cc---ccchhhHHHHH---HHHh
Confidence 99999999866 88899999998887666543211110 00 01112222222 2334
Q ss_pred hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhC-CC
Q 010538 348 SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLS-GI 426 (508)
Q Consensus 348 ~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~-gI 426 (508)
+.+++++.+++.++++++.+.| +. ++++++.+.. ++++++.++. ++.+.|.++ ||
T Consensus 263 ~~~~~~~~~~~~~~~~~l~~~L-~~------~~~~~~~~~~--------~~~~~~~~~~---------~~~~~l~~~~gi 318 (359)
T 1svv_A 263 DNLFFELGAHSNKMAAILKAGL-EA------CGIRLAWPSA--------SNQLFPILEN---------TMIAELNNDFDM 318 (359)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH-HH------TTCCBSSCCS--------SSEECBEEEH---------HHHHHHTTTEEC
T ss_pred hhhHHHHHHHHHHHHHHHHHHh-cc------CCeEEccCCc--------cceEEEEcCH---------HHHHHHHHhcCE
Confidence 4456788999999999999999 54 3677765543 6777777652 377788777 99
Q ss_pred eeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 427 QLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 427 ~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
.+.... + ..++++|+++++.+|.+|+++++++|+++++-
T Consensus 319 ~v~~~~----~--------------------------------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 357 (359)
T 1svv_A 319 YTVEPL----K--------------------------------DGTCIMRLCTSWATEEKECHRFVEVLKRLVAS 357 (359)
T ss_dssp EEEEEE----T--------------------------------TTEEEEEEECCTTCCHHHHHHHHHHHHHC---
T ss_pred EEEecc----c--------------------------------CCCceEEEEccCcCCHHHHHHHHHHHHHHHhc
Confidence 982210 0 02578999999999999999999999987653
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=261.90 Aligned_cols=307 Identities=13% Similarity=0.014 Sum_probs=240.4
Q ss_pred hhhHHHHHHHHHHHHHcCCCC--CCceE--EEcCChHHHHHHHHhhcCCCCC--------CeEEEecccccchHHHHHHH
Q 010538 81 ATCDIVRAAREQVLDYFNASM--KDYKC--IFTSGATAALKLVGEAFPWSHQ--------SSYMYTMENHNSVLGIREYA 148 (508)
Q Consensus 81 ~~~~~~~~~r~~la~~~~~~~--~~~~i--~~t~g~t~al~~~~~~l~~~~g--------~~vl~~~~~h~s~~~~~~~~ 148 (508)
....+.+++++++++++|+++ + ++ ++|+|+|+|+.+++.++. .++ ++|+++...|+++....+.
T Consensus 136 ~~~~le~~l~~~la~~~g~~~~~~--~v~~~~t~ggt~a~~~al~a~~-~~g~~~~g~~~d~Vi~~~~~~~~~~~~~~~- 211 (514)
T 3mad_A 136 STAKFEAEVVAMTAHMLGGDAAGG--TVCGTVTSGGTESLLLAMKTYR-DWARATKGITAPEAVVPVSAHAAFDKAAQY- 211 (514)
T ss_dssp HHHHHHHHHHHHHHHHTTGGGGTS--CCEEEEESSHHHHHHHHHHHHH-HHHHHHHCCSSCEEEEETTSCTHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHcCCCCccC--CcceEEcCcHHHHHHHHHHHHH-HHhhhhcCCCCCeEEEeCccchHHHHHHHH-
Confidence 345667778899999999974 4 56 999999999999998883 333 8999999999887655544
Q ss_pred HhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHc
Q 010538 149 LSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKK 228 (508)
Q Consensus 149 ~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~ 228 (508)
.|++++.||.+.++.+ |+++++ +++ ++++++|++++++|+||.+.|+++|.++|+
T Consensus 212 --~G~~v~~v~~~~~~~~---------------d~~~Le--~~i------~~~~~~v~~~~~~nptG~~~~l~~i~~la~ 266 (514)
T 3mad_A 212 --FGIKLVRTPLDADYRA---------------DVAAMR--EAI------TPNTVVVAGSAPGYPHGVVDPIPEIAALAA 266 (514)
T ss_dssp --HTCEEEEECBCTTSCB---------------CHHHHH--HHC------CTTEEEEEEETTCTTTCCCCCHHHHHHHHH
T ss_pred --cCCeeEEeeeCCCCCC---------------CHHHHH--HHh------ccCCEEEEEeCCCCCCccccCHHHHHHHHH
Confidence 4999999999876666 688998 555 457899999999999999999999999999
Q ss_pred CCccccccCCCCCCCeEEEEeccccCCC-----------CCCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhc
Q 010538 229 NPERILEISPFSKGRWMVLIDAAKGCVT-----------QPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLK 297 (508)
Q Consensus 229 ~~~~~~~~~~~~~~g~~vivD~a~~~g~-----------~~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~ 297 (508)
+ +|+++|+|++|+.+. .+++....++|++++|+||++++|.|+|+++++++......
T Consensus 267 ~------------~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~ 334 (514)
T 3mad_A 267 E------------HGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQ 334 (514)
T ss_dssp H------------HTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTT
T ss_pred H------------hCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEEeCHHHhccc
Confidence 8 899999999987542 25666777899999999998655888999999988765433
Q ss_pred cccc----cCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhccc
Q 010538 298 NTYF----SGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLR 373 (508)
Q Consensus 298 ~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~ 373 (508)
.... ++.. ......|+.+...++++.++++.+...+++++.+++.++++++.+.|+++
T Consensus 335 ~~~~~~~~~~~~-----------------~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~- 396 (514)
T 3mad_A 335 YFIAADWPGGLY-----------------FSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAI- 396 (514)
T ss_dssp CEEESSCTTCSE-----------------EESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-
T ss_pred cccccccCCCcc-----------------cCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhC-
Confidence 2211 1110 11123567777778889999998888788999999999999999999987
Q ss_pred CCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhh
Q 010538 374 HENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSN 453 (508)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~ 453 (508)
++++++.++ .++++|...+. +..++.+.|.++||.+ .|..|
T Consensus 397 -----~g~~~~~~~---------~~~~~~~~~~~-----~~~~l~~~L~~~Gi~v-~g~~~------------------- 437 (514)
T 3mad_A 397 -----PSLKILGDP---------LWVIAVASDEL-----NIYQVMEEMAGRGWRL-NGLHR------------------- 437 (514)
T ss_dssp -----TTCEESSCC---------SSEEEEECSSS-----CHHHHHHHHHTTTCBC-EEETT-------------------
T ss_pred -----CCeEEeCCC---------eEEEEEeCCCC-----CHHHHHHHHHhcCCEe-ccCCC-------------------
Confidence 478887654 35788876442 3456889999999988 33211
Q ss_pred hhcCCccCCCccccCCCCCceEEEecCCC-CCHHHHHHHHHhhhhhhhhhh
Q 010538 454 IEAGHVCWDDNDIIHGKPTGAIRVSFGYM-STFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~iRis~~~~-~t~eev~~l~~~~~~~~~~~~ 503 (508)
++.+|+++... ++.++++++++.|++.++.++
T Consensus 438 ------------------~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~ 470 (514)
T 3mad_A 438 ------------------PPAFHVALTLRHTEPGVVDRFLADLQDAVAQVR 470 (514)
T ss_dssp ------------------TTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHH
T ss_pred ------------------CCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 46799999855 567999999999999887654
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.2e-29 Score=264.88 Aligned_cols=368 Identities=12% Similarity=0.020 Sum_probs=245.1
Q ss_pred CCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCC-ccchhhhhhHHHHHHHHHHHHHcCCC--CCCceEEEcCChHHHH
Q 010538 40 GTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHS-QSDISLATCDIVRAAREQVLDYFNAS--MKDYKCIFTSGATAAL 116 (508)
Q Consensus 40 ~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~~~~--~~~~~i~~t~g~t~al 116 (508)
...||++..++..++.++..++..+. |+.. .+..+.....+.+++++++++++|++ ++ +++||+|+|+|+
T Consensus 92 ~p~~~~~~~~~~~~~~~~~~~l~~~~-----n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~--~~~~t~ggtea~ 164 (504)
T 2okj_A 92 HPRFFNQLSTGLDIIGLAGEWLTSTA-----NTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDG--DGIFSPGGAISN 164 (504)
T ss_dssp CTTEESSSSCCCCHHHHHHHHHHHHH-----CCBSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSC--EEEEESSHHHHH
T ss_pred CCCEEEEccCCCCHHHHHHHHHHHhh-----ccCCCchhhChHHHHHHHHHHHHHHHHhCCCCCCC--CEEEeCCcHHHH
Confidence 46799998777644444444444332 2222 23334445566777889999999998 66 899999999999
Q ss_pred HHHHhhcCC-------CCC-----C-eEEEecccccchHHHHHHHHhcCC-eEEEEccCCccCccccccccccccccccc
Q 010538 117 KLVGEAFPW-------SHQ-----S-SYMYTMENHNSVLGIREYALSQGA-AAFAIDVEEAVDNDGLSESLVTSTKISLL 182 (508)
Q Consensus 117 ~~~~~~l~~-------~~g-----~-~vl~~~~~h~s~~~~~~~~~~~G~-~v~~v~~~~~~~~~~l~~~~~~~~~~~~d 182 (508)
.+++.++.. ++| + +|+++...|+++....+.+. .|. +++.||.+.++.+ |
T Consensus 165 ~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~g-~g~~~v~~v~~~~~~~~---------------d 228 (504)
T 2okj_A 165 MYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALG-FGTDNVILIKCNERGKI---------------I 228 (504)
T ss_dssp HHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTT-SCGGGEEEECBCTTSCB---------------C
T ss_pred HHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHcC-CCcccEEEEecCCCCCC---------------C
Confidence 998887632 134 5 78999999999877665542 133 8999998766666 6
Q ss_pred hhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCC----
Q 010538 183 PIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQP---- 258 (508)
Q Consensus 183 ~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~---- 258 (508)
+++++ ++|.+....+.+|++|++++++|+||.+.|+++|.++|++ +|+++|+|++++.+..+
T Consensus 229 ~~~L~--~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~------------~g~~lhvD~a~~~~~~~~~~~ 294 (504)
T 2okj_A 229 PADFE--AKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEK------------YNLWLHVDAAWGGGLLMSRKH 294 (504)
T ss_dssp HHHHH--HHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHH------------HTCEEEEEETTGGGGGGCTTT
T ss_pred HHHHH--HHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHH------------cCCEEEEehhhhhHHHhCHhh
Confidence 78887 5553211112368999999999999999999999999998 89999999999887653
Q ss_pred -CCCCCC-CCcEEEEeccccccCCCcceEEEEech-hHhhh----ccccccCceE-EecccchhhhhhccCccccccCCC
Q 010538 259 -PDLSKY-PVDFVVMSFYKIFGYPTGLGALIMRND-AAKLL----KNTYFSGGTV-AASIADIDFVKRRQGVEELFEDGT 330 (508)
Q Consensus 259 -~d~~~~-~~D~~~~S~~K~~g~P~G~G~l~~~~~-~~~~l----~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~gt 330 (508)
..+... ++|++++|+|||+++|.|+|+++++++ .++.. .+.+.+++.. ....+...+ ..+.+.
T Consensus 295 ~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------~~~~~r 365 (504)
T 2okj_A 295 RHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDK---------AIQCGR 365 (504)
T ss_dssp GGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGG---------SSCSSC
T ss_pred HhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccC---------CCCCCC
Confidence 233322 689999999999988989999999874 54431 2233232210 000000001 011111
Q ss_pred CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCC--
Q 010538 331 ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPD-- 408 (508)
Q Consensus 331 ~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-- 408 (508)
. + ....++++++.+...|++++.+++.++++++.+.|++. ++++++.+..+ ..++++|+.....
T Consensus 366 r-~-~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~------~~~~~~~~~~p------~~~~v~f~~~~~~~~ 431 (504)
T 2okj_A 366 H-V-DIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR------EEFEMVFNGEP------EHTNVCFWYIPQSLR 431 (504)
T ss_dssp B-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------TTEEESSSSCC------SSSCEEEEECCGGGS
T ss_pred C-c-cHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC------CCEEEEecCCC------CeEEEEEEEeCcccc
Confidence 1 1 12233444555555678999999999999999999987 47999873211 1567778763211
Q ss_pred C----Cc----c--CHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEe
Q 010538 409 G----SW----F--GYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVS 478 (508)
Q Consensus 409 ~----~~----~--~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis 478 (508)
+ .. + ....+.+.|.++|+.+..+..+ .+ ..+++|++
T Consensus 432 ~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~---------------------------------~~-~~~~lRis 477 (504)
T 2okj_A 432 GVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQ---------------------------------GD-KANFFRMV 477 (504)
T ss_dssp SCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEE---------------------------------TT-EEEEEEEC
T ss_pred ccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEE---------------------------------CC-ceEEEEEE
Confidence 0 00 0 0235777888888653321100 00 13689999
Q ss_pred cC-CCCCHHHHHHHHHhhhhhhhh
Q 010538 479 FG-YMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 479 ~~-~~~t~eev~~l~~~~~~~~~~ 501 (508)
++ .++|.+||+++++.|+++.+.
T Consensus 478 ~~~~~~t~edi~~~~~~l~~~~~~ 501 (504)
T 2okj_A 478 ISNPAATQSDIDFLIEEIERLGQD 501 (504)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHTC
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHH
Confidence 96 999999999999999887654
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.9e-28 Score=248.42 Aligned_cols=338 Identities=12% Similarity=0.040 Sum_probs=230.6
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCC--CCCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA--SMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~--~~~~~~i~~t~g~t~a 115 (508)
++.+.|+.+.... +++.+.+++.+.+... ...|.......++.+++.+.+....|+ +++ +|++|+|+++|
T Consensus 31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-----~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~--~i~~t~g~~~a 103 (385)
T 1b5p_A 31 VDLVALTAGEPDFDTPEHVKEAARRALAQG-----KTKYAPPAGIPELREALAEKFRRENGLSVTPE--ETIVTVGGSQA 103 (385)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHHTT-----CCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGG--GEEEESHHHHH
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHhcC-----CCCCCCCCCCHHHHHHHHHHHHHHhCCCCChH--HEEEcCChHHH
Confidence 5788998876543 3566666665543211 112221111233333344444433453 566 89999999999
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc--cCccccccccccccccccchhhhhcCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA--VDNDGLSESLVTSTKISLLPIQRRKGASFP 193 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~--~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~ 193 (508)
+++++.++ .++|++|+++...|+++.. .++..|.+++.+|.+.+ ..+ |+++++ +++
T Consensus 104 l~~~~~~l-~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~---------------d~~~l~--~~l- 161 (385)
T 1b5p_A 104 LFNLFQAI-LDPGDEVIVLSPYWVSYPE---MVRFAGGVVVEVETLPEEGFVP---------------DPERVR--RAI- 161 (385)
T ss_dssp HHHHHHHH-CCTTCEEEEEESCCTHHHH---HHHHTTCEEEEEECCGGGTTCC---------------CHHHHH--TTC-
T ss_pred HHHHHHHh-cCCCCEEEEcCCCchhHHH---HHHHcCCEEEEeecCcccCCCC---------------CHHHHH--Hhc-
Confidence 99999998 6889999999887776554 44557999999998742 233 688998 555
Q ss_pred CCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC---CCCCCCC--CCcE
Q 010538 194 ERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ---PPDLSKY--PVDF 268 (508)
Q Consensus 194 ~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~---~~d~~~~--~~D~ 268 (508)
++++++|++++++||||.++|.+++.++++ +|+++|++||+|++++.... ..++..+ +.++
T Consensus 162 -----~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~---------~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i 227 (385)
T 1b5p_A 162 -----TPRTKALVVNSPNNPTGAVYPKEVLEALAR---------LAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTL 227 (385)
T ss_dssp -----CTTEEEEEEESSCTTTCCCCCHHHHHHHHH---------HHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEE
T ss_pred -----CCCCEEEEEeCCCCCCCCCcCHHHHHHHHH---------HHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEE
Confidence 456899999999999999999555544444 33349999999999875322 2333333 5689
Q ss_pred EEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHH-
Q 010538 269 VVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNL- 345 (508)
Q Consensus 269 ~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~- 345 (508)
++.|+||++| ++| +|++++++++++.+.+.... ...+.+.....++.++++.
T Consensus 228 ~~~s~SK~~~-~~G~RiG~~~~~~~~~~~l~~~~~~------------------------~~~~~~~~~~~a~~~~l~~~ 282 (385)
T 1b5p_A 228 TVNGAAKAFA-MTGWRIGYACGPKEVIKAMASVSRQ------------------------STTSPDTIAQWATLEALTNQ 282 (385)
T ss_dssp EEEESTTTTT-CGGGCCEEEECCHHHHHHHHHHHHT------------------------TTCSCCHHHHHHHHHHHHCH
T ss_pred EEEechhhcC-CcccceEEEEeCHHHHHHHHHHHhh------------------------ccCCCCHHHHHHHHHHHhCC
Confidence 9999999999 668 89999998887766543111 1112344444455556642
Q ss_pred --HHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhh
Q 010538 346 --INSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASL 423 (508)
Q Consensus 346 --~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~ 423 (508)
..+ .+++++++++++++++.+.|+++ ++++..+.+ +.++++.++.. + .+..++.+.|.+
T Consensus 283 ~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~--------~~~~~~~~~~~-~--~~~~~l~~~l~~ 343 (385)
T 1b5p_A 283 EASRA-FVEMAREAYRRRRDLLLEGLTAL-------GLKAVRPSG--------AFYVLMDTSPI-A--PDEVRAAERLLE 343 (385)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHH-------TCCBCCCSB--------TTEEEEECTTT-C--SSHHHHHHHHHH
T ss_pred CcchH-HHHHHHHHHHHHHHHHHHHHHHC-------CCeecCCCe--------eEEEEEecCCC-C--CCHHHHHHHHHH
Confidence 222 36788899999999999999876 466554432 56777777531 1 344568888889
Q ss_pred CCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 424 SGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 424 ~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
+||.+++|..|.. ++++|||++ ++.++++++++.|+++++
T Consensus 344 ~gv~v~~g~~f~~-----------------------------------~~~iRis~~--~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 344 AGVAVVPGTDFAA-----------------------------------FGHVRLSYA--TSEENLRKALERFARVLG 383 (385)
T ss_dssp TTEECEESGGGTC-----------------------------------TTEEEEECC--SCHHHHHHHHHHGGGGC-
T ss_pred CCeEEecccccCC-----------------------------------CCeEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 9999999865421 468999998 799999999999887653
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-28 Score=250.60 Aligned_cols=342 Identities=10% Similarity=-0.002 Sum_probs=235.3
Q ss_pred CCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC--CCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS--MKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~--~~~~~i~~t~g~t~a 115 (508)
++.++|+.+... .+++.+.+++.+.+ .. ....|.......++.+++.+.+.+.+|.+ ++. +|++|+|+++|
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~-~~----~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~-~v~~~~g~~~a 103 (386)
T 1u08_A 30 HQAINLSQGFPDFDGPRYLQERLAHHV-AQ----GANQYAPMTGVQALREAIAQKTERLYGYQPDADS-DITVTAGATEA 103 (386)
T ss_dssp TTCEECCCSSCSSCCCHHHHHHHHHHH-HT----TCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTT-TEEEESSHHHH
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHH-Hh----hccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-CEEEcCChHHH
Confidence 578999988764 35677777765543 22 11122211112333444444444445753 321 59999999999
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc-cCccccccccccccccccchhhhhcCCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA-VDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~-~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
+.+++.++ ..+|++|+++...|+++... ++..|.+++.+|.+.. ..+ |+++++ +++
T Consensus 104 ~~~~~~~~-~~~gd~vl~~~p~~~~~~~~---~~~~g~~~~~v~~~~~~~~~---------------d~~~l~--~~l-- 160 (386)
T 1u08_A 104 LYAAITAL-VRNGDEVICFDPSYDSYAPA---IALSGGIVKRMALQPPHFRV---------------DWQEFA--ALL-- 160 (386)
T ss_dssp HHHHHHHH-CCTTCEEEEEESCCTTHHHH---HHHTTCEEEEEECCTTTCCC---------------CHHHHH--HHC--
T ss_pred HHHHHHHh-CCCCCEEEEeCCCchhHHHH---HHHcCCEEEEeecCcccCcC---------------CHHHHH--Hhh--
Confidence 99999998 67889999999888876654 4456999999998652 333 688888 554
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCCCCCC----CCCC
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQPPDLS----KYPV 266 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d~~----~~~~ 266 (508)
++++++|++++++||||.++|.+.+.++++ +|+++|+++|+|++|+. |....++. ..+.
T Consensus 161 ----~~~~~~v~l~~p~nptG~~~~~~~l~~i~~---------~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~ 227 (386)
T 1u08_A 161 ----SERTRLVILNTPHNPSATVWQQADFAALWQ---------AIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRER 227 (386)
T ss_dssp ----CTTEEEEEEESSCTTTCCCCCHHHHHHHHH---------HHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTT
T ss_pred ----cccCEEEEEeCCCCCCCccCCHHHHHHHHH---------HHHHcCcEEEEEccccccccCCCCCcChhcccCccCc
Confidence 467899999999999999998755555544 34459999999999985 32223332 2368
Q ss_pred cEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHH
Q 010538 267 DFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFN 344 (508)
Q Consensus 267 D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~ 344 (508)
|+++.|+||++| ++| +|++++++++++.+.+... ....+.+.....++.++++
T Consensus 228 ~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~~------------------------~~~~~~~~~~~~a~~~~l~ 282 (386)
T 1u08_A 228 AVAVSSFGKTYH-MTGWKVGYCVAPAPISAEIRKVHQ------------------------YLTFSVNTPAQLALADMLR 282 (386)
T ss_dssp EEEEEEHHHHTT-CGGGCCEEEECCHHHHHHHHHHHH------------------------HHTSSCCHHHHHHHHHHHH
T ss_pred EEEEecchhhcC-CcccceEEEEcCHHHHHHHHHHHH------------------------hhccCCChHHHHHHHHHHh
Confidence 999999999998 668 8999999888776654311 0122344555566666666
Q ss_pred HHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHH-hh
Q 010538 345 LINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLA-SL 423 (508)
Q Consensus 345 ~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L-~~ 423 (508)
.. +.+++++++++.++++++.+.|+++ +++++.+.. +.++++++++... .+..++.+.| ++
T Consensus 283 ~~-~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~--------g~~~~~~~~~~~~--~~~~~~~~~l~~~ 344 (386)
T 1u08_A 283 AE-PEHYLALPDFYRQKRDILVNALNES-------RLEILPCEG--------TYFLLVDYSAVST--LDDVEFCQWLTQE 344 (386)
T ss_dssp HC-THHHHTHHHHHHHHHHHHHHHTTSS-------SCEECCCCB--------SSEEEEECTTTCC--SCHHHHHHHHHHH
T ss_pred CC-cHHHHHHHHHHHHHHHHHHHHHHHC-------CCeecCCCc--------eEEEEEecCCCCC--CCHHHHHHHHHHh
Confidence 43 3346788899999999999999886 577765432 6788988865310 2334576655 57
Q ss_pred CCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 424 SGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 424 ~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
+||.+++|..|.... ..++++|+|++ ++.++++++++.|+++
T Consensus 345 ~gi~v~~g~~f~~~~-------------------------------~~~~~iRis~~--~~~~~i~~~~~~l~~~ 386 (386)
T 1u08_A 345 HGVAAIPLSVFCADP-------------------------------FPHKLIRLCFA--KKESTLLAAAERLRQL 386 (386)
T ss_dssp SCEECEEGGGGCSSC-------------------------------CCSCEEEEECC--SCHHHHHHHHHHHTTC
T ss_pred CCEEEeCchHhCCCC-------------------------------CCCCEEEEEEc--CCHHHHHHHHHHHhhC
Confidence 899999876442210 12578999998 4899999999998753
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.8e-28 Score=244.78 Aligned_cols=319 Identities=15% Similarity=0.117 Sum_probs=234.5
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhcc---ccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHH
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTN---VYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATA 114 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~ 114 (508)
+++++|+.+.... +++.+++++.+.+... ...++.. ...++++++++++|++++ +|++|+|+|+
T Consensus 26 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~----------~~~~lr~~la~~~g~~~~--~i~~t~g~~~ 93 (360)
T 3hdo_A 26 ASWIKLNTNENPYPPSPEVVKAILEELGPDGAALRIYPSA----------SSQKLREVAGELYGFDPS--WIIMANGSDE 93 (360)
T ss_dssp TTSEECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGSCCCS----------SCHHHHHHHHHHHTCCGG--GEEEESSHHH
T ss_pred cceeeccCCCCCCCCCHHHHHHHHHHHhcccchhhcCCCC----------chHHHHHHHHHHhCcCcc--eEEEcCCHHH
Confidence 5689999876554 4666777765543221 2222211 135789999999999888 8999999999
Q ss_pred HHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCC
Q 010538 115 ALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 115 al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
|+++++.++ .++|++|+++...|+++.. .++..|.+++.+|.+.+..+ ++++ ++
T Consensus 94 al~~~~~~l-~~~gd~Vl~~~p~~~~~~~---~~~~~g~~~~~v~~~~~~~~-----------------~~l~--~~--- 147 (360)
T 3hdo_A 94 VLNNLIRAF-AAEGEEIGYVHPSYSYYGT---LAEVQGARVRTFGLTGDFRI-----------------AGFP--ER--- 147 (360)
T ss_dssp HHHHHHHHH-CCTTCEEEEESSSCTHHHH---HHHHHTCEEEEECBCTTSSB-----------------TTCC--SS---
T ss_pred HHHHHHHHH-hCCCCEEEEcCCChHHHHH---HHHHCCCEEEEeeCCCCCCH-----------------HHHH--hh---
Confidence 999999998 6889999999877776554 44456999999998654332 2223 11
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC--CCCCCCC-CCCCCcEEEE
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC--VTQPPDL-SKYPVDFVVM 271 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~--g~~~~d~-~~~~~D~~~~ 271 (508)
.+++++++++++||||.++|++++.++|++ +|+++|+|++|+. +....++ ...+.++++.
T Consensus 148 -----~~~~~v~i~~p~nptG~~~~~~~l~~l~~~------------~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~ 210 (360)
T 3hdo_A 148 -----YEGKVFFLTTPNAPLGPSFPLEYIDELARR------------CAGMLVLDETYAEFAESNALELVRRHENVVVTR 210 (360)
T ss_dssp -----BCSSEEEEESSCTTTCCCCCHHHHHHHHHH------------BSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEE
T ss_pred -----cCCCEEEEeCCCCCCCCCcCHHHHHHHHHH------------CCCEEEEECChHhhCCcchhHHhccCCCEEEEe
Confidence 135699999999999999999999999997 8999999999984 2222221 1235568899
Q ss_pred eccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhc
Q 010538 272 SFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSL 349 (508)
Q Consensus 272 S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~ 349 (508)
|+||++| ++| +|++++++++++.+.... ...+.+....+++.++++.. .
T Consensus 211 s~sK~~g-~~G~r~G~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~a~~~~l~~~--~ 261 (360)
T 3hdo_A 211 TLSKSYS-LAGMRIGLAIARPEVIAALDKIR--------------------------DHYNLDRLAQAACVAALRDQ--A 261 (360)
T ss_dssp ESTTTTS-CTTSCCEEEECCHHHHHHHHHHS--------------------------CSCCSCHHHHHHHHHHHHCH--H
T ss_pred cchHhhc-CCccceeeEeeCHHHHHHHHHhC--------------------------CCCCCCHHHHHHHHHHhcCH--H
Confidence 9999998 445 799999888876665431 11345666677777777642 2
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeec
Q 010538 350 TVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLR 429 (508)
Q Consensus 350 g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~ 429 (508)
.++++.+++.++++++.+.|+++ ++++..+. ++++++.+++. +..++.+.|.++||.++
T Consensus 262 ~~~~~~~~~~~~~~~l~~~L~~~-------~~~~~~~~---------~~~~~~~~~~~-----~~~~l~~~l~~~gi~v~ 320 (360)
T 3hdo_A 262 YLSECCRRIRETREWFTTELRSI-------GYDVIPSQ---------GNYLFATPPDR-----DGKRVYDGLYARKVLVR 320 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-------TCEECCCS---------SSEEEEECTTC-----CHHHHHHHHHHTTEECB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC-------CCEEcCCC---------ccEEEEECCCC-----CHHHHHHHHHHCCEEEE
Confidence 36888999999999999999886 46665332 67888877643 34568889999999998
Q ss_pred cCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 430 TGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 430 ~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
++.. +. .++++|+|++ |.+|+++++++|+++.+
T Consensus 321 ~~~~---~~--------------------------------~~~~iRis~~---~~~e~~~l~~al~~~~~ 353 (360)
T 3hdo_A 321 HFSD---PL--------------------------------LAHGMRISIG---TREEMEQTLAALKEIGE 353 (360)
T ss_dssp CCCS---TT--------------------------------TTTSEEEECC---CHHHHHHHHHHHHHHHC
T ss_pred ECCC---CC--------------------------------CCCEEEEEcC---CHHHHHHHHHHHHHHhc
Confidence 8643 10 1578999998 99999999999998764
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-28 Score=246.44 Aligned_cols=287 Identities=15% Similarity=0.095 Sum_probs=217.0
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCC-CeEEEecccccchHHHHHHHHhcCCeEEEEccCCcc
Q 010538 86 VRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQ-SSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAV 164 (508)
Q Consensus 86 ~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g-~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~ 164 (508)
..++|+.+|++++++++ +|++|+|+++++++++.++ .++| ++|+++...|+++... ++..|.+++.+|.+.+.
T Consensus 60 ~~~lr~~la~~~~~~~~--~v~~~~G~~~ai~~~~~~~-~~~g~d~Vl~~~p~~~~~~~~---~~~~g~~~~~v~~~~~~ 133 (356)
T 1fg7_A 60 PKAVIENYAQYAGVKPE--QVLVSRGADEGIELLIRAF-CEPGKDAILYCPPTYGMYSVS---AETIGVECRTVPTLDNW 133 (356)
T ss_dssp CHHHHHHHHHHHTSCGG--GEEEESHHHHHHHHHHHHH-CCTTTCEEEECSSSCTHHHHH---HHHHTCEEEECCCCTTS
T ss_pred HHHHHHHHHHHhCCChH--HEEEcCCHHHHHHHHHHHH-hCCCCCEEEEeCCChHHHHHH---HHHcCCEEEEeeCCCCC
Confidence 46789999999999887 8999999999999999998 5778 9999988777766544 44469999999987543
Q ss_pred CccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCe
Q 010538 165 DNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRW 244 (508)
Q Consensus 165 ~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~ 244 (508)
.+ |+++++ +++ + ++++|++++++||||.++|.+++.++++ +|+ +|+
T Consensus 134 ~~---------------d~~~l~--~~i------~-~~~~v~l~~p~nptG~~~~~~~l~~l~~---------~~~-~~~ 179 (356)
T 1fg7_A 134 QL---------------DLQGIS--DKL------D-GVKVVYVCSPNNPTGQLINPQDFRTLLE---------LTR-GKA 179 (356)
T ss_dssp CC---------------CHHHHH--TSC------T-TEEEEEEESSCTTTCCCCCHHHHHHHHH---------HHT-TTC
T ss_pred CC---------------CHHHHH--HHh------c-CCCEEEEeCCCCCCCCCCCHHHHHHHHH---------hCC-CCC
Confidence 44 688888 554 3 6899999999999999999999999998 567 899
Q ss_pred EEEEeccccCCCCC---CCC-CCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhh
Q 010538 245 MVLIDAAKGCVTQP---PDL-SKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKR 318 (508)
Q Consensus 245 ~vivD~a~~~g~~~---~d~-~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~ 318 (508)
++|+|++|+..... .++ ...+.++++.|+||+|| ++| +|++++++++++.+.+...
T Consensus 180 ~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~~~~~~~l~~~~~----------------- 241 (356)
T 1fg7_A 180 IVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFA-LAGLRCGFTLANEEVINLLMKVIA----------------- 241 (356)
T ss_dssp EEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTC-CGGGCCEEEEECHHHHHHHHHHSC-----------------
T ss_pred EEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhhc-CchhhhEEEEeCHHHHHHHHHhcC-----------------
Confidence 99999999853311 222 33467899999999998 667 7999999888776654310
Q ss_pred ccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCc
Q 010538 319 RQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGS 398 (508)
Q Consensus 319 ~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (508)
..+.|.....+..++++......+++..++++++++++.+.|++++ ++..+.+.. ++
T Consensus 242 ---------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~------~~~~~~~~~--------~~ 298 (356)
T 1fg7_A 242 ---------PYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIP------CVEQVFDSE--------TN 298 (356)
T ss_dssp ---------SSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHST------TEEEECCCS--------SS
T ss_pred ---------CCCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCC------CceEECCCC--------Ce
Confidence 1134555555555555432111167888899999999999998872 443333432 78
Q ss_pred eEEEEeeCCCCCccCHHHHHHHHhhCCCeecc-CCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEE
Q 010538 399 MVSFNLKRPDGSWFGYREVEKLASLSGIQLRT-GCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRV 477 (508)
Q Consensus 399 ~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~-g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRi 477 (508)
+++++++ + ..++.+.|.++||.+++ |..|.. ++++||
T Consensus 299 ~~~~~~~--~-----~~~l~~~L~~~gI~v~~~g~~~~~-----------------------------------~~~iRi 336 (356)
T 1fg7_A 299 YILARFK--A-----SSAVFKSLWDQGIILRDQNKQPSL-----------------------------------SGCLRI 336 (356)
T ss_dssp EEEEEET--T-----HHHHHHHHHHTTEECEECTTSTTC-----------------------------------TTEEEE
T ss_pred EEEEECC--C-----HHHHHHHHHHCCEEEEECCCCCCC-----------------------------------CCeEEE
Confidence 8888885 1 23578888999999998 765421 468999
Q ss_pred ecCCCCCHHHHHHHHHhhhhh
Q 010538 478 SFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 478 s~~~~~t~eev~~l~~~~~~~ 498 (508)
|++ +.+|+++++++|+++
T Consensus 337 s~~---~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 337 TVG---TREESQRVIDALRAE 354 (356)
T ss_dssp ECC---CHHHHHHHHHHHHTC
T ss_pred EeC---CHHHHHHHHHHHHhh
Confidence 998 799999999998764
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-28 Score=247.16 Aligned_cols=323 Identities=12% Similarity=0.054 Sum_probs=236.8
Q ss_pred CCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHH
Q 010538 39 NGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALK 117 (508)
Q Consensus 39 ~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~ 117 (508)
+++|.|+.+... ++++.+.+++.+.+ .....+|.. ...+++++++++++++++ +|++|+|+|+|++
T Consensus 26 ~~~idl~~~~~~~~~~~~v~~a~~~~~-~~~~~y~~~----------~~~~l~~~la~~~~~~~~--~i~~~~g~t~al~ 92 (361)
T 3ftb_A 26 RELLDYSSNINPLGIPKSFLNNIDEGI-KNLGVYPDV----------NYRRLNKSIENYLKLKDI--GIVLGNGASEIIE 92 (361)
T ss_dssp --CEETTCCCCTTCSCHHHHTTHHHHH-HGGGSCCCT----------TCHHHHHHHHHHHTCCSC--EEEEESSHHHHHH
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHH-HHhcCCCCc----------cHHHHHHHHHHHhCCCcc--eEEEcCCHHHHHH
Confidence 568888877443 35777777765543 332222221 146789999999999988 9999999999999
Q ss_pred HHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCC
Q 010538 118 LVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP 197 (508)
Q Consensus 118 ~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~ 197 (508)
+++.++ ++|+++...|+++. ..++..|.+++.+|.+.++.+ ++++++ +++
T Consensus 93 ~~~~~~-----d~vi~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~---------------~~~~l~--~~l----- 142 (361)
T 3ftb_A 93 LSISLF-----EKILIIVPSYAEYE---INAKKHGVSVVFSYLDENMCI---------------DYEDII--SKI----- 142 (361)
T ss_dssp HHHTTC-----SEEEEEESCCTHHH---HHHHHTTCEEEEEECCTTSCC---------------CHHHHH--HHT-----
T ss_pred HHHHHc-----CcEEEecCChHHHH---HHHHHcCCeEEEeecCcccCC---------------CHHHHH--Hhc-----
Confidence 999987 78888876666554 445567999999998866555 467777 554
Q ss_pred CCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCC--CCC----CCCCCcEEEE
Q 010538 198 AGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQP--PDL----SKYPVDFVVM 271 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~--~d~----~~~~~D~~~~ 271 (508)
.+ +++|++++++||||.++|.+++.++++ +|+++|+++|+|++|+..... ... ...+.++++.
T Consensus 143 -~~-~~~v~i~~p~nptG~~~~~~~l~~i~~---------~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~ 211 (361)
T 3ftb_A 143 -DD-VDSVIIGNPNNPNGGLINKEKFIHVLK---------LAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIR 211 (361)
T ss_dssp -TT-CSEEEEETTBTTTTBCCCHHHHHHHHH---------HHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEE
T ss_pred -cC-CCEEEEeCCCCCCCCCCCHHHHHHHHH---------HhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEe
Confidence 34 799999999999999999887777766 455599999999998754331 111 1224458889
Q ss_pred eccccccCCCc--ceEEE-EechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHh
Q 010538 272 SFYKIFGYPTG--LGALI-MRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINS 348 (508)
Q Consensus 272 S~~K~~g~P~G--~G~l~-~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~ 348 (508)
|+||.+| ++| +|+++ .++++.+.+.... ...+++....+++.++++. .
T Consensus 212 s~sK~~~-~~G~r~g~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~l~~--~ 262 (361)
T 3ftb_A 212 AMTKFFA-MPGIRFGYGITNNKEIAAKIKAKQ--------------------------NPWNINCFAEMAAINCLKD--T 262 (361)
T ss_dssp ESSSTTS-CGGGCCEEEEESCHHHHHHHHTTS--------------------------CTTCSCHHHHHHHHHTSSC--H
T ss_pred eChhhcC-CCCcceeEEEeCCHHHHHHHHhhC--------------------------CCCCCCHHHHHHHHHHhcC--H
Confidence 9999998 546 79988 6777766555431 1235666777777777663 2
Q ss_pred cChHHHHHHHHHHHHHHHHHHhcccCCCCCceEE-EecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCe
Q 010538 349 LTVPAICRHIASLGMYVRKVLLSLRHENGADVCT-IYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQ 427 (508)
Q Consensus 349 ~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~ 427 (508)
..++.+++++.++++++.+.|+++ ++++ +..+. ++++++.+++. +..++.+.|.++||.
T Consensus 263 ~~~~~~~~~~~~~~~~l~~~l~~~------~~~~~~~~~~---------~~~~~~~~~~~-----~~~~l~~~l~~~gi~ 322 (361)
T 3ftb_A 263 NYIEESLLWIKKERKRFIEELNKI------GFIKRVFSPH---------ANFVLCRLENI-----SGEKLYDSLLKEDIV 322 (361)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS------SSEEEEECCS---------SSEEEEEESSS-----CHHHHHHHHHTTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC------CCCceecCCC---------CeEEEEEcCCC-----CHHHHHHHHHHCCeE
Confidence 346888999999999999999987 4687 65442 67888888752 345688889888999
Q ss_pred eccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 428 LRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 428 v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
+++|..|... .++++|+|++ +.+|++++++.++++.+
T Consensus 323 v~~g~~~~~~---------------------------------~~~~iRis~~---~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 323 IRRCCNFIGL---------------------------------DDSFVRFAIK---DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp CEECTTSTTC---------------------------------CTTEEEEECC---CHHHHHHHHHHHHHHHH
T ss_pred EeeCccCCCC---------------------------------CCCEEEEEcC---CHHHHHHHHHHHHHHHh
Confidence 9998766431 2689999998 99999999999988765
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=243.87 Aligned_cols=338 Identities=12% Similarity=0.016 Sum_probs=235.0
Q ss_pred chHHHHHHhhccCCCCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCC
Q 010538 25 SIDQIRATEFKRLENGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKD 103 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~ 103 (508)
.+..+.. .|..-.+++++|+.+... .+++.+.+++.+.+ ......+. ....++++.++++++++++
T Consensus 11 ~~~~~~~-~~~~~~~~~idl~~~~~~~~~~~~v~~a~~~~~-~~~~~y~~----------~~~~~l~~~la~~~~~~~~- 77 (364)
T 1lc5_A 11 NIREPAT-VLGISPDQLLDFSANINPLGMPVSVKRALIDNL-DCIERYPD----------ADYFHLHQALARHHQVPAS- 77 (364)
T ss_dssp CCHHHHH-HHTSCGGGSEECSSCCCTTCCCHHHHHHHHHTG-GGGGSCCC----------TTCHHHHHHHHHHHTSCGG-
T ss_pred cHHHHHH-hcCCCccceEEeccccCCCCCCHHHHHHHHHHH-HHhhcCCC----------CCHHHHHHHHHHHHCcCHH-
Confidence 4445554 554322457888877543 25677777765533 22111111 1246789999999999887
Q ss_pred ceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccch
Q 010538 104 YKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLP 183 (508)
Q Consensus 104 ~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~ 183 (508)
+|++|+|+++++.+++.++ +|++|++....|+++. ..++..|.+++.+|.+....++ + +
T Consensus 78 -~v~~~~g~~~al~~~~~~~---~gd~vl~~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~-------------~-l 136 (364)
T 1lc5_A 78 -WILAGNGETESIFTVASGL---KPRRAMIVTPGFAEYG---RALAQSGCEIRRWSLREADGWQ-------------L-T 136 (364)
T ss_dssp -GEEEESSHHHHHHHHHHHH---CCSEEEEEESCCTHHH---HHHHHTTCEEEEEECCGGGTTC-------------C-C
T ss_pred -HEEECCCHHHHHHHHHHHc---CCCeEEEeCCCcHHHH---HHHHHcCCeEEEEeCCcccccc-------------h-h
Confidence 8999999999999999998 4588998876666554 4455679999999987522221 0 1
Q ss_pred hhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC---HHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC---
Q 010538 184 IQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN---LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ--- 257 (508)
Q Consensus 184 ~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~---i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~--- 257 (508)
+++. +. .++++++|++++++||||.++| +++|.++|++ +|+++|+|++|+.+..
T Consensus 137 ~~~~--~~------~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~------------~~~~li~De~~~~~~~~~~ 196 (364)
T 1lc5_A 137 DAIL--EA------LTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKS------------LNINLILDEAFIDFIPHET 196 (364)
T ss_dssp TTHH--HH------CCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHH------------HTCEEEEECTTGGGSTTCC
T ss_pred HHHH--Hh------ccCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhh------------cCcEEEEECcChhhccCcc
Confidence 2233 11 2356799999999999999999 5666666665 9999999999985432
Q ss_pred -CCCC-CCCCCcEEEEeccccccCCCc--ceEEE-EechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCC
Q 010538 258 -PPDL-SKYPVDFVVMSFYKIFGYPTG--LGALI-MRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTAS 332 (508)
Q Consensus 258 -~~d~-~~~~~D~~~~S~~K~~g~P~G--~G~l~-~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~ 332 (508)
.+++ ...+.++++.|+||++| ++| +|+++ .++++++.+.+.. ...+.+
T Consensus 197 ~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~l~~~~--------------------------~~~~~~ 249 (364)
T 1lc5_A 197 GFIPALKDNPHIWVLRSLTKFYA-IPGLRLGYLVNSDDAAMARMRRQQ--------------------------MPWSVN 249 (364)
T ss_dssp CSGGGCTTCTTEEEEEESTTTTT-CTTTCCEEEECCCHHHHHHHHHHS--------------------------CTTCSC
T ss_pred chhhHhccCCCEEEEEECchhhc-CCccceEEEEECCHHHHHHHHHhC--------------------------CCCCCC
Confidence 2332 33567899999999998 556 79999 8888876665431 112455
Q ss_pred hhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCcc
Q 010538 333 FLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWF 412 (508)
Q Consensus 333 ~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 412 (508)
....+++.++++.. ..++++++++.++++++.+.|+++ ++++++.+ . ++++++.+++. ...
T Consensus 250 ~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~------~~~~~~~~-~--------g~~~~~~~~~~-~~~- 310 (364)
T 1lc5_A 250 ALAALAGEVALQDS--AWQQATWHWLREEGARFYQALCQL------PLLTVYPG-R--------ANYLLLRCERE-DID- 310 (364)
T ss_dssp HHHHHHHHHGGGCH--HHHHHHHHHHHHHHHHHHHHHHTS------TTEEECCC-S--------SSEEEEEESCT-TCC-
T ss_pred HHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHhcC------CCCEECCC-C--------CeEEEEECCCc-HHH-
Confidence 56566666565541 246788889999999999999887 36877532 2 67888888642 223
Q ss_pred CHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHH
Q 010538 413 GYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNR 492 (508)
Q Consensus 413 ~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~ 492 (508)
+.+.|.++||.+++|..|... .++++|||++ +.+|+++++
T Consensus 311 ----l~~~l~~~gi~v~~g~~~~~~---------------------------------~~~~iRis~~---~~~~~~~l~ 350 (364)
T 1lc5_A 311 ----LQRRLLTQRILIRSCANYPGL---------------------------------DSRYYRVAIR---SAAQNERLL 350 (364)
T ss_dssp ----HHHHHHTTTEECEECTTSTTC---------------------------------CTTEEEEECC---CHHHHHHHH
T ss_pred ----HHHHHHHCCcEEeeCcccCCC---------------------------------CCCEEEEEeC---CHHHHHHHH
Confidence 778888899999998765321 2578999986 799999999
Q ss_pred Hhhhhhhhhh
Q 010538 493 CSSFDFVNFS 502 (508)
Q Consensus 493 ~~~~~~~~~~ 502 (508)
+.++++++-+
T Consensus 351 ~~l~~~~~~~ 360 (364)
T 1lc5_A 351 AALRNVLTGI 360 (364)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHhhcc
Confidence 9998876543
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=247.16 Aligned_cols=340 Identities=11% Similarity=0.065 Sum_probs=231.2
Q ss_pred CCCeeeeCCCCCCC-CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc----C--CCCCCceEEEcCC
Q 010538 39 NGTVYLDHAGATLY-SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF----N--ASMKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~--~~~~~~~i~~t~g 111 (508)
+++|+|+.+....+ ++.+.+++.+.+ .. ....|... ....++|+.+++++ | ++++ +|++|+|
T Consensus 31 ~~~i~l~~g~~~~~~~~~v~~a~~~~~-~~----~~~~y~~~----~g~~~lr~~ia~~~~~~~g~~~~~~--~v~~t~g 99 (391)
T 3h14_A 31 RRIIHMEVGQPGTGAPRGAVEALAKSL-ET----DALGYTVA----LGLPALRQRIARLYGEWYGVDLDPG--RVVITPG 99 (391)
T ss_dssp CCCEECCCSSCSSCSCHHHHHHHHHHH-C------------------CCHHHHHHHHHHHHHHHCCCCCGG--GEEEESS
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHH-hc----CCCCCCCC----CChHHHHHHHHHHHHHHhCCCCCHH--HEEEecC
Confidence 67899998876554 566777665533 21 11111111 11344555555555 4 5666 8999999
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCC
Q 010538 112 ATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGAS 191 (508)
Q Consensus 112 ~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~ 191 (508)
+|+|+++++.++ .++|++|++....|+++. ..++..|++++.+|.+.++.. ..|+++++ +
T Consensus 100 ~~~al~~~~~~l-~~~gd~vl~~~p~~~~~~---~~~~~~g~~~~~v~~~~~~~~-------------~~d~~~l~--~- 159 (391)
T 3h14_A 100 SSGGFLLAFTAL-FDSGDRVGIGAPGYPSYR---QILRALGLVPVDLPTAPENRL-------------QPVPADFA--G- 159 (391)
T ss_dssp HHHHHHHHHHHH-CCTTCEEEEEESCCHHHH---HHHHHTTCEEEEEECCGGGTT-------------SCCHHHHT--T-
T ss_pred hHHHHHHHHHHh-cCCCCEEEEcCCCCccHH---HHHHHcCCEEEEeecCcccCC-------------CCCHHHHH--h-
Confidence 999999999998 678899998876666554 445567999999998754422 11678888 2
Q ss_pred CCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC---CCCCCCCC-CCc
Q 010538 192 FPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT---QPPDLSKY-PVD 267 (508)
Q Consensus 192 l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~---~~~d~~~~-~~D 267 (508)
. ++++|++++++||||.++|.+++.++++ +|+++|+++|+|++|+... .+.+.... +.+
T Consensus 160 -----~---~~~~v~i~~p~nptG~~~~~~~l~~l~~---------~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 222 (391)
T 3h14_A 160 -----L---DLAGLMVASPANPTGTMLDHAAMGALIE---------AAQAQGASFISDEIYHGIEYEAKAVTALELTDEC 222 (391)
T ss_dssp -----S---CCSEEEEESSCTTTCCCCCHHHHHHHHH---------HHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSS
T ss_pred -----c---CCeEEEECCCCCCCCccCCHHHHHHHHH---------HHHHcCCEEEEECcchhcccCCCCcChhhcCCCE
Confidence 2 6799999999999999999555544444 3344999999999998422 23333322 466
Q ss_pred EEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHH
Q 010538 268 FVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNL 345 (508)
Q Consensus 268 ~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~ 345 (508)
+++.|++|++| ++| +|++++++++++.+.... ....++++....+++.++++
T Consensus 223 i~~~s~sK~~g-~~G~r~G~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~a~~~~l~- 276 (391)
T 3h14_A 223 YVINSFSKYFS-MTGWRVGWMVVPEDQVRVVERIA------------------------QNMFICAPHASQVAALAALD- 276 (391)
T ss_dssp EEEEESSSTTC-CTTSCCEEEECCGGGHHHHHHHH------------------------HHTTCCCCHHHHHHHHHHTT-
T ss_pred EEEEechhccC-CccceeEEEEeCHHHHHHHHHHH------------------------hhhccCCCHHHHHHHHHHhC-
Confidence 89999999998 556 799999988876654331 11234556666666666666
Q ss_pred HHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhh-C
Q 010538 346 INSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASL-S 424 (508)
Q Consensus 346 ~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~-~ 424 (508)
....++.+++++.++++++.+.|+++ ++....++. .+.++++.++... .+..++.+.|.+ +
T Consensus 277 -~~~~~~~~~~~~~~~~~~l~~~l~~~-------~~~~~~~~~-------~~~~~~~~~~~~~---~~~~~~~~~l~~~~ 338 (391)
T 3h14_A 277 -CDAELQANLDVYKANRKLMLERLPKA-------GFTRIAPPD-------GAFYVYADVSDLT---DDSRAFAAEILEKA 338 (391)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH-------TCCCBCCCC-------BTTEEEEECTTTC---SCHHHHHHHHHHHH
T ss_pred -ChHHHHHHHHHHHHHHHHHHHHHHHc-------CCCcccCCC-------eeEEEEEecCccC---CCHHHHHHHHHHHC
Confidence 23347888999999999999999886 232222222 1567777776421 234457766554 5
Q ss_pred CCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhhh
Q 010538 425 GIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQF 504 (508)
Q Consensus 425 gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~~ 504 (508)
||.+++|..|..+. .++++|+|++. +.++++.+++.|+++++-...
T Consensus 339 gi~v~~g~~~~~~~--------------------------------~~~~iRis~~~--~~~~i~~~l~~l~~~~~~~~~ 384 (391)
T 3h14_A 339 GVAVTPGLDFDPER--------------------------------GAGTLRFSYAR--ATADIEEGLDRLEAFMQARGE 384 (391)
T ss_dssp CEECEEGGGTCTTT--------------------------------GGGEEEEECCS--CHHHHHHHHHHHHHHHHHC--
T ss_pred CEEEcCchhhCCCC--------------------------------CCCeEEEEecC--CHHHHHHHHHHHHHHHHHhcc
Confidence 99999998775521 26899999997 889999999999998865443
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=253.96 Aligned_cols=352 Identities=12% Similarity=0.013 Sum_probs=236.4
Q ss_pred CCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC--CCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS--MKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~--~~~~~i~~t~g~t~a 115 (508)
.+.++|+.+... .+++.+.+++.+.+ .. +...|.......++.+++.+.+.+.+|.+ ++ .+|++|+|+++|
T Consensus 25 ~~~i~l~~~~~~~~~~~~v~~a~~~~~-~~----~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~-~~v~~t~g~~~a 98 (411)
T 2o0r_A 25 IGAVNLGQGFPDEDGPPKMLQAAQDAI-AG----GVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPE-TEVLVTVGATEA 98 (411)
T ss_dssp TTCEESSCSSCSSCCCHHHHHHHHHHH-HT----TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTT-TSEEEEEHHHHH
T ss_pred CCeeeccCcCCCCCCCHHHHHHHHHHH-hc----CCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCC-ceEEEeCCHHHH
Confidence 578999988765 35677777765544 22 11122211112334444444444445753 32 159999999999
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc---cCccccccccccccccccchhhhhcCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA---VDNDGLSESLVTSTKISLLPIQRRKGASF 192 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~---~~~~~l~~~~~~~~~~~~d~~~l~~~~~l 192 (508)
+.+++.++ .++|++|+++...|+++... ++..|.+++.+|.+.+ ..+ |+++++ +++
T Consensus 99 l~~~~~~~-~~~gd~Vl~~~~~y~~~~~~---~~~~g~~~~~v~~~~~~~~~~~---------------d~~~l~--~~l 157 (411)
T 2o0r_A 99 IAAAVLGL-VEPGSEVLLIEPFYDSYSPV---VAMAGAHRVTVPLVPDGRGFAL---------------DADALR--RAV 157 (411)
T ss_dssp HHHHHHHH-CCTTCEEEEEESCCTTHHHH---HHHTTCEEEEEECEEETTEEEC---------------CHHHHH--HHC
T ss_pred HHHHHHHh-cCCCCEEEEeCCCcHhHHHH---HHHcCCEEEEeeccccccCCCC---------------CHHHHH--Hhh
Confidence 99999998 67889999999888887654 4456999999998643 223 688888 555
Q ss_pred CCCCCCCCCceEEEEeCCCCCCccccCH---HHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC----CCCCCCC--
Q 010538 193 PERDPAGDAYNLFAFPSECNFSGSRFNL---DLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT----QPPDLSK-- 263 (508)
Q Consensus 193 ~~~~~~~~~t~lv~~~~~~n~tG~~~~i---~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~----~~~d~~~-- 263 (508)
.+++++|++++++||||.++|. ++|.++|++ +|+++|+|++|+.+. .+.++..
T Consensus 158 ------~~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~------------~~~~li~De~~~~~~~~g~~~~~~~~~~ 219 (411)
T 2o0r_A 158 ------TPRTRALIINSPHNPTGAVLSATELAAIAEIAVA------------ANLVVITDEVYEHLVFDHARHLPLAGFD 219 (411)
T ss_dssp ------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH------------TTCEEEEECTTTTCBCTTCCCCCGGGST
T ss_pred ------ccCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHH------------cCCEEEEEccccccccCCCCCcChhhcc
Confidence 3578999999999999999997 455555554 999999999998643 2233322
Q ss_pred --CCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHH
Q 010538 264 --YPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASI 339 (508)
Q Consensus 264 --~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l 339 (508)
.+.|+++.|+||++| ++| +|++++++++++.+.+... ....+.+....+++
T Consensus 220 ~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~~------------------------~~~~~~~~~~~~a~ 274 (411)
T 2o0r_A 220 GMAERTITISSAAKMFN-CTGWKIGWACGPAELIAGVRAAKQ------------------------YLSYVGGAPFQPAV 274 (411)
T ss_dssp TTGGGEEEEEEHHHHTT-CTTTCEEEEECCHHHHHHHHHHHH------------------------HHTSCCCTTHHHHH
T ss_pred CCCCCEEEEeechhhcC-CccceEEEEeeCHHHHHHHHHHHh------------------------hccCCCChHHHHHH
Confidence 467999999999998 668 8999999888766554311 11123344455666
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHH
Q 010538 340 RHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEK 419 (508)
Q Consensus 340 ~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~ 419 (508)
.++++.. +..++++++++.++++++.+.|++. ++++..+.. +.++++.+++... .+..++.+
T Consensus 275 ~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~--------g~~~~~~~~~~~~--~~~~~~~~ 336 (411)
T 2o0r_A 275 ALALDTE-DAWVAALRNSLRARRDRLAAGLTEI-------GFAVHDSYG--------TYFLCADPRPLGY--DDSTEFCA 336 (411)
T ss_dssp HHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHH-------TCEECCCCB--------SSEEEEECGGGTC--CCHHHHHH
T ss_pred HHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHHc-------CCEecCCCe--------eEEEEEecCCCCC--CCHHHHHH
Confidence 6676643 2346788999999999999999886 577765432 5688899875211 23345666
Q ss_pred HH-hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 420 LA-SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 420 ~L-~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
.| +++||.+++|..|..... ++++.+.. ...+++|||++ ++.+|++++++.|+++
T Consensus 337 ~l~~~~gi~v~~g~~f~~~~~------~~~~~~~~----------------~~~~~iRis~~--~~~e~i~~~~~~l~~~ 392 (411)
T 2o0r_A 337 ALPEKVGVAAIPMSAFCDPAA------GQASQQAD----------------VWNHLVRFTFC--KRDDTLDEAIRRLSVL 392 (411)
T ss_dssp HHHHHHSEECEEGGGGSCCC--------------C----------------CGGGCEEEECC--SCHHHHHHHHHHHGGG
T ss_pred HHHHhCCEEEcChhhhCCCcc------cccccccc----------------CCCCeEEEEec--CCHHHHHHHHHHHHHH
Confidence 65 578999999876532110 01111110 02578999997 4899999999999987
Q ss_pred hhhh
Q 010538 499 VNFS 502 (508)
Q Consensus 499 ~~~~ 502 (508)
++..
T Consensus 393 ~~~~ 396 (411)
T 2o0r_A 393 AERP 396 (411)
T ss_dssp GC--
T ss_pred Hhcc
Confidence 6544
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-28 Score=260.07 Aligned_cols=369 Identities=12% Similarity=0.039 Sum_probs=252.7
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC--CCCceEEEcCChHHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS--MKDYKCIFTSGATAAL 116 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~--~~~~~i~~t~g~t~al 116 (508)
...-||++..++..++..+.+++..... .....|..+.....+.+++.+++++++|.+ ++ .++||+|+|+|+
T Consensus 94 ~~p~f~~~~~~~~~~~~~~~e~l~~~~~----~~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~--~~~~t~ggt~a~ 167 (511)
T 3vp6_A 94 GHPRFFNQLSTGLDIIGLAGEWLTSTAN----TNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDG--DGIFSPGGAISN 167 (511)
T ss_dssp TSTTEESSSSCCCCHHHHHHHHHHHHHC----CCSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSC--EEEEESSHHHHH
T ss_pred CCCCceEeecCCCcHHHHHHHHHHHHhc----cCCCCcccCchHHHHHHHHHHHHHHHhCCCCCCC--ceEECCchHHHH
Confidence 3455888887776666665554443322 112234445566778888999999999998 45 899999999999
Q ss_pred HHHHhhcCCC-------------CCCeEEEecccccchHHHHHHHHhcCC---eEEEEccCCccCccccccccccccccc
Q 010538 117 KLVGEAFPWS-------------HQSSYMYTMENHNSVLGIREYALSQGA---AAFAIDVEEAVDNDGLSESLVTSTKIS 180 (508)
Q Consensus 117 ~~~~~~l~~~-------------~g~~vl~~~~~h~s~~~~~~~~~~~G~---~v~~v~~~~~~~~~~l~~~~~~~~~~~ 180 (508)
..++.++... ++++|+++...|+++....+.+ |. +++.||.+.++.+
T Consensus 168 ~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~~~---g~g~~~~~~v~~d~~~~~-------------- 230 (511)
T 3vp6_A 168 MYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAAL---GFGTDNVILIKCNERGKI-------------- 230 (511)
T ss_dssp HHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHHHT---TSCGGGEEEECBCTTSCB--------------
T ss_pred HHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHHHHc---CCCCCcEEEeecCCCCcc--------------
Confidence 8877665321 4678999999999987666544 66 8999999877766
Q ss_pred cchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCC
Q 010538 181 LLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPD 260 (508)
Q Consensus 181 ~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d 260 (508)
|+++++ ++|.+....+..+++|++++++|++|.+.|+++|.++|++ +|+++++|++++.+....+
T Consensus 231 -d~~~Le--~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~------------~~~~lhvD~a~~~~~~~~~ 295 (511)
T 3vp6_A 231 -IPADFE--AKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEK------------YNLWLHVDAAWGGGLLMSR 295 (511)
T ss_dssp -CHHHHH--HHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHH------------HTCEEEEEETTGGGGGGCT
T ss_pred -CHHHHH--HHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHH------------cCCEEEEEccchhhHhhCh
Confidence 688888 6663221122348999999999999999999999999998 9999999999998776332
Q ss_pred -----CC-CCCCcEEEEeccccccCCCcceEEEEechh-Hhhhc---cccccCceEEecccchhhhhhccCccccccCCC
Q 010538 261 -----LS-KYPVDFVVMSFYKIFGYPTGLGALIMRNDA-AKLLK---NTYFSGGTVAASIADIDFVKRRQGVEELFEDGT 330 (508)
Q Consensus 261 -----~~-~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~-~~~l~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt 330 (508)
+. ..++|++++++|||+++|.|+|+++++++. +.... +.+...... .....+. ........+.
T Consensus 296 ~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~---~~~~~~~----~~~~~~~~~r 368 (511)
T 3vp6_A 296 KHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDK---HYDVSYD----TGDKAIQCGR 368 (511)
T ss_dssp TTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSC---SSCGGGC----CGGGSSCSSC
T ss_pred hhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCccc---ccccccC----ccCCCCCCCC
Confidence 22 125799999999998889999999998763 33321 111111000 0000000 0011122222
Q ss_pred CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCC--
Q 010538 331 ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPD-- 408 (508)
Q Consensus 331 ~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-- 408 (508)
+ ...++++.+++.+...|++++.+++.++++++.+.|++. ++++++.+..+ ..++++|++....
T Consensus 369 ~--~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~------pg~~l~~~~~p------~~~~v~f~~~p~~~~ 434 (511)
T 3vp6_A 369 H--VDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR------EEFEMVFNGEP------EHTNVCFWYIPQSLR 434 (511)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC------TTEEESSSSCC------SSSCEEEEECCGGGS
T ss_pred c--hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC------CCEEEEecCCC------CeEEEEEEEeCcccc
Confidence 2 245677778887777789999999999999999999987 47999874211 1677888764211
Q ss_pred C---Cc-----c--CHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEe
Q 010538 409 G---SW-----F--GYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVS 478 (508)
Q Consensus 409 ~---~~-----~--~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis 478 (508)
+ .. + ....+.+.|.++|+.+.... +. ....+.+|++
T Consensus 435 ~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~----~~------------------------------~~~~~~lRi~ 480 (511)
T 3vp6_A 435 GVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQ----PQ------------------------------GDKANFFRMV 480 (511)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEE----EE------------------------------TTEEEEEEEC
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEE----Ee------------------------------CCceEEEEEE
Confidence 0 00 0 01247788888887644310 00 0013579999
Q ss_pred c-CCCCCHHHHHHHHHhhhhhhh
Q 010538 479 F-GYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 479 ~-~~~~t~eev~~l~~~~~~~~~ 500 (508)
+ +.++|.+||++++++|+++-+
T Consensus 481 ~~~~~~t~~di~~ll~~i~~~~~ 503 (511)
T 3vp6_A 481 ISNPAATQSDIDFLIEEIERLGQ 503 (511)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHC
T ss_pred ecCCCCCHHHHHHHHHHHHHHHH
Confidence 9 799999999999999887654
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=8.7e-28 Score=243.73 Aligned_cols=336 Identities=12% Similarity=0.039 Sum_probs=234.0
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKL 118 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~ 118 (508)
++.+||+++..+.+++.+++++.+.. .. +. ..+......+++++++++++| ++. +|++|+|+|+|+.+
T Consensus 7 ~~~id~~~~~~~~~~~~v~~a~~~~~-~~-----~~---~~~~~~~~~~~l~~~la~~~g-~~~--~v~~~~~gt~a~~~ 74 (356)
T 1v72_A 7 PPALGFSSDNIAGASPEVAQALVKHS-SG-----QA---GPYGTDELTAQVKRKFCEIFE-RDV--EVFLVPTGTAANAL 74 (356)
T ss_dssp CCCCBCSCGGGCCCCHHHHHHHHHTT-SS-----CC---CSTTCSHHHHHHHHHHHHHHT-SCC--EEEEESCHHHHHHH
T ss_pred CceEeeccCCccCCCHHHHHHHHhhc-cC-----cc---cccccchHHHHHHHHHHHHhC-CCC--cEEEeCCccHHHHH
Confidence 57899999888888999988876543 11 11 111124567889999999999 444 69999999999999
Q ss_pred HHhhcCCCCCCeEEEecccccchHHHHHHHHhc--CCeEEEEccCCccCccccccccccccccccchhhhhcCC-CCCCC
Q 010538 119 VGEAFPWSHQSSYMYTMENHNSVLGIREYALSQ--GAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGA-SFPER 195 (508)
Q Consensus 119 ~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~--G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~-~l~~~ 195 (508)
++.++ .++|++|+++...|+++.... .+... |.+++.+|.+ +..+ |+++++ + ++.+.
T Consensus 75 al~~~-~~~gd~vi~~~~~~~~~~~~~-~~~~~~~g~~~~~v~~~-~~~~---------------d~~~l~--~~~i~~~ 134 (356)
T 1v72_A 75 CLSAM-TPPWGNIYCHPASHINNDECG-APEFFSNGAKLMTVDGP-AAKL---------------DIVRLR--ERTREKV 134 (356)
T ss_dssp HHHTS-CCTTEEEEECTTSHHHHSSTT-HHHHHTTSCEEEECCCG-GGCC---------------CHHHHH--HHTTSST
T ss_pred HHHHh-cCCCCEEEEcCccchhhhhch-HHHHHhCCcEEEEecCC-CCeE---------------cHHHHH--HHhhhcc
Confidence 99998 578999999988777654330 13334 8899999875 2334 688888 7 66431
Q ss_pred -CCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC------CCCCCCCC-CCCCc
Q 010538 196 -DPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC------VTQPPDLS-KYPVD 267 (508)
Q Consensus 196 -~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~------g~~~~d~~-~~~~D 267 (508)
....+++++|++++++| ||.++|.+.+.++++ +|+++|+++|+|++++. +..+..+. ..++|
T Consensus 135 ~~~~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~~---------~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d 204 (356)
T 1v72_A 135 GDVHTTQPACVSITQATE-VGSIYTLDEIEAIGD---------VCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVD 204 (356)
T ss_dssp TCTTSCEEEEEEEESSCT-TSCCCCHHHHHHHHH---------HHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCC
T ss_pred hhhccCCceEEEEEcCCC-CCccCCHHHHHHHHH---------HHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCC
Confidence 01124789999999876 999777655554444 34449999999999863 22222221 13689
Q ss_pred EEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH
Q 010538 268 FVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN 347 (508)
Q Consensus 268 ~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~ 347 (508)
+++.|+||+ |+|.|+|++++++++++.+..... ..|+.......++..+++.+.
T Consensus 205 ~~~~s~sK~-g~~~G~g~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~l~ 258 (356)
T 1v72_A 205 ALSFGATKN-GVLAAEAIVLFNTSLATEMSYRRK-------------------------RAGHLSSKMRFLSAQIDAYLT 258 (356)
T ss_dssp EEEECCGGG-TCSSCEEEEESSGGGHHHHHHHHH-------------------------HTTCCCSSTHHHHHHHHHHTS
T ss_pred EEEEecccC-CCcCccEEEEECHHHHhhHHHHhh-------------------------ccCchhhhHHHHHHHHHHHHH
Confidence 999999999 558888899998888765543210 011111112333334455554
Q ss_pred hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCe
Q 010538 348 SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQ 427 (508)
Q Consensus 348 ~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~ 427 (508)
+..+..+.++..++++++.+.|+++ +++++..+.. ++++++.++. ++.+.|.++||.
T Consensus 259 ~~~~~~~~~~~~~~~~~l~~~L~~~------~g~~~~~~~~--------~~~~~~~~~~---------~~~~~l~~~gi~ 315 (356)
T 1v72_A 259 DDLWLRNARKANAAAQRLAQGLEGL------GGVEVLGGTE--------ANILFCRLDS---------AMIDALLKAGFG 315 (356)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTTC------TTEEEESCCC--------SSEEEEEECH---------HHHHHHHHTTCB
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhC------CCcEEccCCC--------ccEEEEEcCH---------HHHHHHHhcCeE
Confidence 4335567788899999999999886 3788876543 6888888742 378888889999
Q ss_pred eccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 428 LRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 428 v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
+++|. + .++++|+++++.+|.+|++++++.|+++++..
T Consensus 316 v~~g~-~------------------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~ 353 (356)
T 1v72_A 316 FYHDR-W------------------------------------GPNVVRFVTSFATTAEDVDHLLNQVRLAADRT 353 (356)
T ss_dssp CBCSS-S------------------------------------STTEEEEECCTTCCHHHHHHHHHHHHHTC---
T ss_pred Eeccc-c------------------------------------CCCeEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 98864 1 04689999999999999999999999876543
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-28 Score=251.87 Aligned_cols=338 Identities=12% Similarity=0.016 Sum_probs=230.5
Q ss_pred CCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc----C--CCCCCceEEEcCC
Q 010538 39 NGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF----N--ASMKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~--~~~~~~~i~~t~g 111 (508)
+++++|+.+..+ ++++.+.+++ +.+ ... ...|..... ..++++.+++++ | ++++ +|++|+|
T Consensus 43 ~~~i~l~~~~~~~~~~~~v~~a~-~~l-~~~----~~~y~~~~g----~~~l~~~la~~~~~~~g~~~~~~--~v~~~~g 110 (409)
T 2gb3_A 43 VRIHHLNIGQPDLKTPEVFFERI-YEN-KPE----VVYYSHSAG----IWELREAFASYYKRRQRVDVKPE--NVLVTNG 110 (409)
T ss_dssp CEEEECSSCCCCSCCCTHHHHHH-HHT-CCS----SCCCCCTTC----CHHHHHHHHHHHHHTSCCCCCGG--GEEEESH
T ss_pred CCEEeccCCCCCCCCCHHHHHHH-HHH-hcC----CCCCCCCCC----cHHHHHHHHHHHHHHhCCCCCHH--HEEEeCC
Confidence 568899988775 3466677776 544 221 111211111 234555555555 3 4556 8999999
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCC
Q 010538 112 ATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGAS 191 (508)
Q Consensus 112 ~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~ 191 (508)
+|+|+.+++.++ .++|++|+++...|+++.... +..|.+++.+|.+....+ .. +++++ ++
T Consensus 111 ~t~a~~~~~~~~-~~~gd~Vl~~~~~~~~~~~~~---~~~g~~~~~v~~~~~~~~-------------~~-~~~l~--~~ 170 (409)
T 2gb3_A 111 GSEAILFSFAVI-ANPGDEILVLEPFYANYNAFA---KIAGVKLIPVTRRMEEGF-------------AI-PQNLE--SF 170 (409)
T ss_dssp HHHHHHHHHHHH-CCTTCEEEEEESCCTHHHHHH---HHHTCEEEEEECCGGGTS-------------CC-CTTGG--GG
T ss_pred HHHHHHHHHHHh-CCCCCEEEEcCCCchhHHHHH---HHcCCEEEEeccCCCCCC-------------cc-HHHHH--Hh
Confidence 999999999998 678899999998888766544 445999999998742222 00 34556 44
Q ss_pred CCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC---CCC-CCC-CCC
Q 010538 192 FPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ---PPD-LSK-YPV 266 (508)
Q Consensus 192 l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~---~~d-~~~-~~~ 266 (508)
+ .+++++|++++++||||.++|.+.+.++++ +|+++|+++|+|++|+.+.. +.+ +.. .+.
T Consensus 171 l------~~~~~~v~~~~p~nptG~~~~~~~l~~i~~---------~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~ 235 (409)
T 2gb3_A 171 I------NERTKGIVLSNPCNPTGVVYGKDEMRYLVE---------IAERHGLFLIVDEVYSEIVFRGEFASALSIESDK 235 (409)
T ss_dssp C------CTTEEEEEEESSCTTTCCCCCHHHHHHHHH---------HHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTT
T ss_pred h------CcCCeEEEECCCCCCCCCCcCHHHHHHHHH---------HHHHcCCEEEEECcccccccCCCCCCccccCCCC
Confidence 4 357899999999999999998544444433 33349999999999986532 233 222 257
Q ss_pred cEEEEeccccccCCCc--ceEEEEec-hhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHH
Q 010538 267 DFVVMSFYKIFGYPTG--LGALIMRN-DAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGF 343 (508)
Q Consensus 267 D~~~~S~~K~~g~P~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al 343 (508)
|+++.|+||++| ++| +|++++++ ++++.+.+... .. . +++....+++.+++
T Consensus 236 ~i~~~s~sK~~g-~~G~r~G~~~~~~~~l~~~l~~~~~-----------------------~~-~-~~~~~~~~a~~~~l 289 (409)
T 2gb3_A 236 VVVIDSVSKKFS-ACGARVGCLITRNEELISHAMKLAQ-----------------------GR-L-APPLLEQIGSVGLL 289 (409)
T ss_dssp EEEEEESTTTTT-CGGGCCEEEECSCHHHHHHHHHHHH-----------------------HS-C-CCCHHHHHHHHHHH
T ss_pred EEEEecchhccC-CccceEEEEEECcHHHHHHHHHHHh-----------------------cc-C-CCCHHHHHHHHHHH
Confidence 999999999998 667 89999998 88766654311 11 1 44555555566566
Q ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEE-ecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHh
Q 010538 344 NLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTI-YGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLAS 422 (508)
Q Consensus 344 ~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~ 422 (508)
+.. ..+++.+.+++.++++++.+.|+++ ++++ ..+.. +.++++++++ .+..++.+.|.
T Consensus 290 ~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~~--------~~~~~~~~~~-----~~~~~l~~~l~ 348 (409)
T 2gb3_A 290 NLD-DSFFDFVRETYRERVETVLKKLEEH-------GLKRFTKPSG--------AFYITAELPV-----EDAEEFARWML 348 (409)
T ss_dssp TCC-HHHHHHHHHHHHHHHHHHHHHHHHT-------TCCCBCCCSB--------SSEEEEECSS-----SCHHHHHHHHH
T ss_pred hcc-HHHHHHHHHHHHHHHHHHHHHHHHc-------CceeeeCCCe--------eEEEEEEeCC-----CCHHHHHHHHH
Confidence 431 2246788899999999999999886 4555 43332 5677777762 23455777887
Q ss_pred hC------CCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhh
Q 010538 423 LS------GIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 423 ~~------gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~ 496 (508)
++ ||.+++|..|.... ....+++|++++ +|.++++++++.|+
T Consensus 349 ~~~~~~~~gi~v~~g~~f~~~~------------------------------~~~~~~iRis~~--~~~e~i~~~~~~l~ 396 (409)
T 2gb3_A 349 TDFNMDGETTMVAPLRGFYLTP------------------------------GLGKKEIRIACV--LEKDLLSRAIDVLM 396 (409)
T ss_dssp HSCCBTTEEEECEEGGGGCSST------------------------------TTTSSEEEEECC--SCHHHHHHHHHHHH
T ss_pred hccccccCcEEEeCchHhCCCC------------------------------CCCCCEEEEEeC--CCHHHHHHHHHHHH
Confidence 66 99999886543210 012578999999 89999999999999
Q ss_pred hhhhhh
Q 010538 497 DFVNFS 502 (508)
Q Consensus 497 ~~~~~~ 502 (508)
++++.+
T Consensus 397 ~~l~~~ 402 (409)
T 2gb3_A 397 EGLKMF 402 (409)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887654
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=8.4e-29 Score=256.11 Aligned_cols=350 Identities=15% Similarity=0.048 Sum_probs=244.6
Q ss_pred eeeCCCCCCCCHHHHHHHHHHhhccc-cCCCCCccchh-hhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHH
Q 010538 43 YLDHAGATLYSELQMEAIFRDFTTNV-YGNPHSQSDIS-LATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVG 120 (508)
Q Consensus 43 yld~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~ 120 (508)
++++++.++.++.+++++.+.+...+ .+++.+.+..+ .....+.+.+|+++++++|++++ .+++++| |+|+.+++
T Consensus 26 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~~--~i~~~sG-t~a~~~a~ 102 (405)
T 2vi8_A 26 IELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHA--NVQPHSG-AQANMAVY 102 (405)
T ss_dssp EECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE--ECCCSSH-HHHHHHHH
T ss_pred eeeccCcccCCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCce--EEEecCc-HHHHHHHH
Confidence 56667777789989888755432121 12333322222 23445555688999999999855 3444555 99999999
Q ss_pred hhcCCCCCCeEEEecccccchHH-HH--HHHHhcCCeEEEEccC-CccCccccccccccccccccchhhhhcCCCCCCCC
Q 010538 121 EAFPWSHQSSYMYTMENHNSVLG-IR--EYALSQGAAAFAIDVE-EAVDNDGLSESLVTSTKISLLPIQRRKGASFPERD 196 (508)
Q Consensus 121 ~~l~~~~g~~vl~~~~~h~s~~~-~~--~~~~~~G~~v~~v~~~-~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~ 196 (508)
.++ .++|++|+++...|+++.. +. .... .+.++..++++ ....+ |+++++ +++.+
T Consensus 103 ~~~-~~~gd~Vl~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~---------------d~~~l~--~~i~~-- 161 (405)
T 2vi8_A 103 FTV-LEHGDTVLGMNLSHGGHLTHGSPVNFSG-VQYNFVAYGVDPETHVI---------------DYDDVR--EKARL-- 161 (405)
T ss_dssp HHH-CCTTCEEEEECGGGTCCTTTTCTTSHHH-HHSEEEEECBCTTTCSB---------------CHHHHH--HHHHH--
T ss_pred HHh-cCCCCEEEEecccccchhcccchhhhcc-ceeEEEecccccccCCc---------------CHHHHH--HHHHh--
Confidence 998 6889999999999988753 21 1211 13477777765 23333 577777 44421
Q ss_pred CCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCC---CCcEEEEec
Q 010538 197 PAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKY---PVDFVVMSF 273 (508)
Q Consensus 197 ~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~---~~D~~~~S~ 273 (508)
.++++|+++. ++ .|...|+++|.++|++ +|+++|+|++|+.|..+.+.... .+|++++|+
T Consensus 162 ---~~~~~v~~~~-~~-~~~~~~l~~i~~l~~~------------~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~ 224 (405)
T 2vi8_A 162 ---HRPKLIVAAA-AA-YPRIIDFAKFREIADE------------VGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTT 224 (405)
T ss_dssp ---HCCSEEEECC-SS-CCSCCCHHHHHHHHHH------------HTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEES
T ss_pred ---cCCeEEEEeC-CC-CCccCCHHHHHHHHHH------------cCCEEEEEccccccccccCcCCCccccCCEEEEec
Confidence 2568887743 33 4677899999999998 89999999999864332222212 589999999
Q ss_pred cccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHH
Q 010538 274 YKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPA 353 (508)
Q Consensus 274 ~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~ 353 (508)
||++++|.| |++++++++.+.+.+... .+..++++..+++++.++++.+.+.++++
T Consensus 225 sK~~~g~~g-G~~~~~~~~~~~l~~~~~-----------------------~~~~~~~~~~~~aa~~~al~~~~~~~~~~ 280 (405)
T 2vi8_A 225 HKTLRGPRG-GMILCQEQFAKQIDKAIF-----------------------PGIQGGPLMHVIAAKAVAFGEALQDDFKA 280 (405)
T ss_dssp SSTTCCCSC-EEEEECHHHHHHHHHHHT-----------------------TTTCSSCCHHHHHHHHHHHHHHHSHHHHH
T ss_pred cccCCCCCC-eEEEEcHHHHHHHHhhhc-----------------------ccccCCCCHHHHHHHHHHHHHHHhhhHHH
Confidence 999987888 999999888766654311 12246677888888888888876557899
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCC
Q 010538 354 ICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCF 433 (508)
Q Consensus 354 i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~ 433 (508)
+.+++.++++++.+.|+++ +++++.+... ++++++.++... .+...+.+.|.++||.+++|..
T Consensus 281 ~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~~-------~~~~~~~~~~~~---~~~~~~~~~l~~~gi~v~~g~~ 343 (405)
T 2vi8_A 281 YAKRVVDNAKRLASALQNE-------GFTLVSGGTD-------NHLLLVDLRPQQ---LTGKTAEKVLDEVGITVNKNTI 343 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHT-------TCEEGGGSCS-------SSEEEEECGGGT---CCHHHHHHHHHHHTEECEEECC
T ss_pred HHHHHHHHHHHHHHHHHhC-------CCeEecCCCC-------ceEEEEEccCCC---CCHHHHHHHHHHcCceeccCcC
Confidence 9999999999999999886 5777765322 788889886421 2345688889999999998864
Q ss_pred CCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC----CCHHHHHHHHHhhhhhhhhhh
Q 010538 434 CNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM----STFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 434 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~----~t~eev~~l~~~~~~~~~~~~ 503 (508)
|.... +....+++|+|++.+ .|.+|+++++++|+++++.++
T Consensus 344 ~~~~~-----------------------------~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~~ 388 (405)
T 2vi8_A 344 PYDPE-----------------------------SPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNVG 388 (405)
T ss_dssp TTCSS-----------------------------CTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCTT
T ss_pred ccccC-----------------------------CCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhccc
Confidence 31100 001246799999974 679999999999998876543
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=247.84 Aligned_cols=359 Identities=10% Similarity=-0.003 Sum_probs=240.5
Q ss_pred chHHHHHHhhccCCCCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC--CCC
Q 010538 25 SIDQIRATEFKRLENGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN--ASM 101 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~--~~~ 101 (508)
.|+...+ .|....+++++|+.+..+ ++++.+.+++.+.+ .. ....|..+ ..++.+++.+.+++.+| +++
T Consensus 18 ~~d~~g~-~~g~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~-~~----~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~ 89 (399)
T 1c7n_A 18 KWDLMYS-QNPEVGNEVVPLSVADMEFKNPPELIEGLKKYL-DE----TVLGYTGP--TEEYKKTVKKWMKDRHQWDIQT 89 (399)
T ss_dssp HHHHHHH-HCTTCCTTCCCCCSSSCSSCCCHHHHHHHHHHH-HH----CCCSSBCC--CHHHHHHHHHHHHHHHCCCCCG
T ss_pred ccccchh-hccccCCCceeeeecCCCCCCCHHHHHHHHHHH-hc----CCCCCCCC--cHHHHHHHHHHHHHHhCCCCCh
Confidence 4554443 453211468888887764 34677777765543 21 11122221 23333334444444457 566
Q ss_pred CCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccC-CccCccccccccccccccc
Q 010538 102 KDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVE-EAVDNDGLSESLVTSTKIS 180 (508)
Q Consensus 102 ~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~-~~~~~~~l~~~~~~~~~~~ 180 (508)
+ +|++|+|+++|+.+++.++ .++|++|++....|+++. ..++..|.+++.+|.+ .++.. .
T Consensus 90 ~--~v~~t~g~~~a~~~~~~~l-~~~gd~vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~g~~-------------~ 150 (399)
T 1c7n_A 90 D--WIINTAGVVPAVFNAVREF-TKPGDGVIIITPVYYPFF---MAIKNQERKIIECELLEKDGYY-------------T 150 (399)
T ss_dssp G--GEEEESSHHHHHHHHHHHH-CCTTCEEEECSSCCTHHH---HHHHTTTCEEEECCCEEETTEE-------------E
T ss_pred h--hEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCCcHhHH---HHHHHcCCEEEecccccCCCCE-------------E
Confidence 6 8999999999999999998 578899998887666654 4445679999999885 22211 1
Q ss_pred cchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC---HHHHHHHHcCCccccccCCCCCCCeEEEEeccccC---
Q 010538 181 LLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN---LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC--- 254 (508)
Q Consensus 181 ~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~---i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~--- 254 (508)
.|+++++ ++++ .+++++|++++++||||.++| +++|.++|++ +|+++|+|++|+.
T Consensus 151 ~d~~~l~--~~l~-----~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~------------~~~~li~De~~~~~~~ 211 (399)
T 1c7n_A 151 IDFQKLE--KLSK-----DKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLK------------SDLMLWSDEIHFDLIM 211 (399)
T ss_dssp CCHHHHH--HHHT-----CTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHH------------SSCEEEEECTTTTCBC
T ss_pred EcHHHHH--HHhc-----cCCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHH------------cCCEEEEEcccccccc
Confidence 1678888 5553 257899999999999999999 6666666665 9999999999986
Q ss_pred -CCCCCCCCCC-----CCcEEEEeccccccCCCc--ceEEEEec-hhHhhhccccccCceEEecccchhhhhhccCcccc
Q 010538 255 -VTQPPDLSKY-----PVDFVVMSFYKIFGYPTG--LGALIMRN-DAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEEL 325 (508)
Q Consensus 255 -g~~~~d~~~~-----~~D~~~~S~~K~~g~P~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 325 (508)
|..+.++... +.++++.|+||++| ++| +|++++++ ++++.+.+... .
T Consensus 212 ~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~l~~~~~-----------------------~ 267 (399)
T 1c7n_A 212 PGYEHTVFQSIDEQLADKTITFTAPSKTFN-IAGMGMSNIIIKNPDIRERFTKSRD-----------------------A 267 (399)
T ss_dssp TTCCCCCGGGSCHHHHTTEEEEECSHHHHT-CGGGCCEEEECCCHHHHHHHHHHHH-----------------------H
T ss_pred CCCCcccHHHcCccccCcEEEEEeChhhcc-ccchheEEEEECCHHHHHHHHHHHh-----------------------h
Confidence 3233444332 45689999999998 557 79999974 57666554311 1
Q ss_pred ccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhc-ccCCCCCceEEEecCCCCCcccCCCCceEEEEe
Q 010538 326 FEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLS-LRHENGADVCTIYGTYTSEVSYHDTGSMVSFNL 404 (508)
Q Consensus 326 ~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 404 (508)
+..++++....+++.++++.. ...++.+++++.++++++.+.|++ + ++++++.+.. +.++++.+
T Consensus 268 ~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~------~~~~~~~~~~--------~~~~~~~~ 332 (399)
T 1c7n_A 268 TSGMPFTTLGYKACEICYKEC-GKWLDGCIKVIDKNQRIVKDFFEVNH------PEIKAPLIEG--------TYLQWIDF 332 (399)
T ss_dssp TTCCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHC------TTSBCCCCSB--------SSEEEEEC
T ss_pred cccCCCCHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHhhC------CCCeEecCCc--------eEEEEEEc
Confidence 112355666666666676642 224678889999999999999987 6 3566554432 45667888
Q ss_pred eCCCCCccCHHHHHHHHh-hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCC
Q 010538 405 KRPDGSWFGYREVEKLAS-LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMS 483 (508)
Q Consensus 405 ~~~~~~~~~~~~l~~~L~-~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 483 (508)
++.. .+..++.+.|. ++||.+++|..|... ..+++|||++..
T Consensus 333 ~~~~---~~~~~~~~~l~~~~gi~v~~g~~~~~~---------------------------------~~~~iRis~~~~- 375 (399)
T 1c7n_A 333 RALK---MDHKAMEEFMIHKAQIFFDEGYIFGDG---------------------------------GIGFERINLAAP- 375 (399)
T ss_dssp GGGC---CCHHHHHHHHHHTTCCCCEEGGGGCGG---------------------------------GTTEEEEECCSC-
T ss_pred ccCC---CCHHHHHHHHHHhCCEEEeCccccCCC---------------------------------CCCeEEEEeccC-
Confidence 6420 23445778885 789999998765431 157899999964
Q ss_pred CHHHHHHHHHhhhhhhhhhhhcc
Q 010538 484 TFEDAKVNRCSSFDFVNFSQFLN 506 (508)
Q Consensus 484 t~eev~~l~~~~~~~~~~~~~~~ 506 (508)
.++++++++.++++++.+..-|
T Consensus 376 -~~~l~~~l~~l~~~l~~~~~~~ 397 (399)
T 1c7n_A 376 -SSVIQESLERLNKALKDLKNRH 397 (399)
T ss_dssp -HHHHHHHHHHHHHHHHHHC---
T ss_pred -HHHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999998877655433
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=247.98 Aligned_cols=345 Identities=11% Similarity=0.037 Sum_probs=233.6
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc----CC--CC-CCceEEEcC
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF----NA--SM-KDYKCIFTS 110 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~--~~-~~~~i~~t~ 110 (508)
+++++|+.+.... +++.+.+++.+ .+... ....|... ....++++.+++++ |. ++ + +|++|+
T Consensus 37 ~~~idl~~g~~~~~~~~~v~~a~~~-~~~~~---~~~~y~~~----~g~~~l~~~ia~~~~~~~g~~~~~~~--~v~~t~ 106 (412)
T 2x5d_A 37 EDIIDLSMGNPDGPTPPHIVEKLCT-VAQRE---DTHGYSTS----RGIPRLRRAISHWYRDRYDVQIDPES--EAIVTI 106 (412)
T ss_dssp CCCEECSSCCCCSCCCHHHHHHHHH-TC------------CT----TCCHHHHHHHHHHHHHHHCCCCCTTT--SEEEES
T ss_pred CCEEecCCCCCCCCCCHHHHHHHHH-HHhCC---CCCCCCCC----CCcHHHHHHHHHHHHHHhCCCCCCCc--CEEEcC
Confidence 5678888776543 46667666544 32211 01112111 11345666777766 75 55 5 799999
Q ss_pred ChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCC
Q 010538 111 GATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGA 190 (508)
Q Consensus 111 g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~ 190 (508)
|+++|+.+++.++ ..+|++|+++...|+++.... +..|.+++.+|.+.+..+ ..|+++++ +
T Consensus 107 g~~~a~~~~~~~~-~~~gd~Vl~~~p~~~~~~~~~---~~~g~~~~~~~~~~~~~~-------------~~d~~~l~--~ 167 (412)
T 2x5d_A 107 GSKEGLAHLMLAT-LDHGDTILVPNPSYPIHIYGA---VIAGAQVRSVPLVPGIDF-------------FNELERAI--R 167 (412)
T ss_dssp CHHHHHHHHHHHH-CCTTCEEEEEESCCHHHHHHH---HHHTCEEEEEECSTTSCH-------------HHHHHHHH--H
T ss_pred ChHHHHHHHHHHh-CCCCCEEEEcCCCchhHHHHH---HHcCCEEEEeecCCccCC-------------CCCHHHHH--H
Confidence 9999999999998 678899999988887665544 446999999998753121 11678888 5
Q ss_pred CCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC----CCCCCCC---
Q 010538 191 SFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT----QPPDLSK--- 263 (508)
Q Consensus 191 ~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~----~~~d~~~--- 263 (508)
++ .+++++|++++++||||.++|.+.+.++++ +|+++|+++|+|++|+.+. .+.++..
T Consensus 168 ~i------~~~~~~v~l~~p~nptG~~~~~~~l~~l~~---------~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 232 (412)
T 2x5d_A 168 ES------IPKPRMMILGFPSNPTAQCVELDFFERVVA---------LAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPG 232 (412)
T ss_dssp TE------ESCCSEEEEESSCTTTCCCCCHHHHHHHHH---------HHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTT
T ss_pred hc------ccCceEEEECCCCCCCCCcCCHHHHHHHHH---------HHHHcCCEEEEeccccccccCCCCCCChhhccC
Confidence 54 357899999999999999999755544444 3334999999999998743 2334333
Q ss_pred -CCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHH
Q 010538 264 -YPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIR 340 (508)
Q Consensus 264 -~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~ 340 (508)
.+.|+++.|+||++| ++| +|++++++++++.+..... ...++.+....+++.
T Consensus 233 ~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~~------------------------~~~~~~~~~~~~a~~ 287 (412)
T 2x5d_A 233 AKDIAVEFFTLSKSYN-MAGWRIGFMVGNPELVSALARIKS------------------------YHDYGTFTPLQVAAI 287 (412)
T ss_dssp GGGTEEEEEECC-CCS-CTTSCCEEEEECHHHHHHHHHHHH------------------------HHCCCCCHHHHHHHH
T ss_pred ccCcEEEEecCccccC-CcccceEEEEcCHHHHHHHHHHHh------------------------hhccCCCHHHHHHHH
Confidence 367899999999998 557 7999999888776654311 112345555566555
Q ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHH
Q 010538 341 HGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKL 420 (508)
Q Consensus 341 ~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 420 (508)
++++.. +..++.+++++.++++++.+.|+++ +++++.+.. +.++++.++..-+ ..+..++.+.
T Consensus 288 ~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~--------g~~~~~~~~~~~~-~~~~~~~~~~ 350 (412)
T 2x5d_A 288 AALEGD-QQCVRDIARQYQQRRDVLVKGLREA-------GWMVENPKA--------SMYVWAKIPEPYA-HLGSLEFAKK 350 (412)
T ss_dssp HHHHSC-SHHHHHHHHHHHHHHHHHHHHHHHH-------TCCCCCCSB--------SSEEEEECCTTTG-GGCHHHHHHH
T ss_pred HHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHC-------CCEecCCCe--------eeEEEEEcCCccC-CCCHHHHHHH
Confidence 566532 1236788899999999999999876 455554332 5678888853200 0033457777
Q ss_pred H-hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 421 A-SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 421 L-~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
| +++||.+++|..|... ..+++|||++. +.++++.+++.+.+++
T Consensus 351 l~~~~gi~v~~g~~f~~~---------------------------------~~~~iRis~~~--~~~~l~~~l~~l~~~l 395 (412)
T 2x5d_A 351 LLQDAKVSVSPGIGFGDY---------------------------------GDDHVRFALIE--NRDRLRQAVRGIKAMF 395 (412)
T ss_dssp HHHHHCEECEEGGGGCGG---------------------------------GTTEEEEECCS--CHHHHHHHHHHHHHHH
T ss_pred HHHHCCEEEeCchhhCCC---------------------------------CCCeEEEEecC--CHHHHHHHHHHHHHHH
Confidence 7 4579999998766332 15789999997 8999999999999887
Q ss_pred hhhhh
Q 010538 500 NFSQF 504 (508)
Q Consensus 500 ~~~~~ 504 (508)
+-+..
T Consensus 396 ~~~~~ 400 (412)
T 2x5d_A 396 RADGL 400 (412)
T ss_dssp HHTTC
T ss_pred HhcCC
Confidence 65443
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-28 Score=250.75 Aligned_cols=337 Identities=13% Similarity=0.026 Sum_probs=233.4
Q ss_pred CCCeeeeCCCC---C-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc------CCCCCCceEEE
Q 010538 39 NGTVYLDHAGA---T-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF------NASMKDYKCIF 108 (508)
Q Consensus 39 ~~~iyld~~~~---~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~------~~~~~~~~i~~ 108 (508)
++.++|+.+.. . ++++.+.+++.+.+. ... ..|..... ..++++.+++++ +++++ +|++
T Consensus 38 ~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~-~~~----~~y~~~~g----~~~l~~~la~~l~~~~g~~~~~~--~v~~ 106 (406)
T 1xi9_A 38 IKVIRLNIGDPVKFDFQPPEHMKEAYCKAIK-EGH----NYYGDSEG----LPELRKAIVEREKRKNGVDITPD--DVRV 106 (406)
T ss_dssp CCCEECCCCCGGGTTCCCCHHHHHHHHHHHH-TTC----CSCCCTTC----CHHHHHHHHHHHHHHHCCCCCGG--GEEE
T ss_pred CCEEEecCCCCCcCCCCCCHHHHHHHHHHHh-cCC----CCCCCCCC----cHHHHHHHHHHHHHhcCCCCCHH--HEEE
Confidence 57899998876 2 346777777655442 211 11211111 234555555555 45666 8999
Q ss_pred cCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhc
Q 010538 109 TSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRK 188 (508)
Q Consensus 109 t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~ 188 (508)
|+|+|+|+.+++.++ .++|++|+++...|+++... ++..|++++.+|.+.+... ..|+++++
T Consensus 107 t~g~~~al~~~~~~l-~~~gd~Vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~-------------~~d~~~l~- 168 (406)
T 1xi9_A 107 TAAVTEALQLIFGAL-LDPGDEILVPGPSYPPYTGL---VKFYGGKPVEYRTIEEEDW-------------QPDIDDIR- 168 (406)
T ss_dssp ESHHHHHHHHHHHHH-CCTTCEEEEEESCCHHHHHH---HHHTTCEEEEEEEEGGGTS-------------EECHHHHH-
T ss_pred cCChHHHHHHHHHHh-CCCCCEEEEcCCCCccHHHH---HHHcCCEEEEeecCCCcCC-------------cCCHHHHH-
Confidence 999999999999998 67899999998888765544 4557999999998642111 11678888
Q ss_pred CCCCCCCCCCCCCceEEEEeCCCCCCccccC---HHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC---CCCCC
Q 010538 189 GASFPERDPAGDAYNLFAFPSECNFSGSRFN---LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ---PPDLS 262 (508)
Q Consensus 189 ~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~---i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~---~~d~~ 262 (508)
+++ .+++++|++++++||||.++| +++|.++|++ +|+++|+|++|+.+.. +.++.
T Consensus 169 -~~l------~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~------------~~~~li~De~~~~~~~~~~~~~~~ 229 (406)
T 1xi9_A 169 -KKI------TDRTKAIAVINPNNPTGALYDKKTLEEILNIAGE------------YEIPVISDEIYDLMTYEGEHISPG 229 (406)
T ss_dssp -HHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH------------HTCCEEEECTTTTCBSSSCCCCHH
T ss_pred -Hhh------CcCceEEEEECCCCCCCCCcCHHHHHHHHHHHHH------------cCCEEEEEcCccccccCCCCCCHH
Confidence 555 346899999999999999998 5566666665 9999999999986432 22332
Q ss_pred C--CCC-cEEEEeccccccCCCc--ceEEE--Eec----hhHhhhccccccCceEEecccchhhhhhccCccccccCCCC
Q 010538 263 K--YPV-DFVVMSFYKIFGYPTG--LGALI--MRN----DAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTA 331 (508)
Q Consensus 263 ~--~~~-D~~~~S~~K~~g~P~G--~G~l~--~~~----~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 331 (508)
. .+. |+++.|+||+++ ++| +|+++ .++ ++++.+.... . .. +++
T Consensus 230 ~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~~l~~~l~~~~-----------------------~-~~-~~~ 283 (406)
T 1xi9_A 230 SLTKDVPVIVMNGLSKVYF-ATGWRLGYMYFVDPENKLSEVREAIDRLA-----------------------R-IR-LCP 283 (406)
T ss_dssp HHCSSSCEEEEEESTTTTC-CGGGCCEEEEEECTTCTTHHHHHHHHHHH-----------------------H-HT-CCS
T ss_pred HcCCCceEEEEeccccccC-CCccEEEEEEEecCchhHHHHHHHHHHHH-----------------------H-hh-cCC
Confidence 2 356 899999999998 667 89999 787 7766554321 0 11 345
Q ss_pred ChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCc
Q 010538 332 SFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSW 411 (508)
Q Consensus 332 ~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 411 (508)
+....+++.++++...+ +++++.+++.++++++.+.|+++ +++++..+.. +.++++.++...+
T Consensus 284 ~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~~------~~~~~~~~~~--------~~~~~~~~~~~~~-- 346 (406)
T 1xi9_A 284 NTPAQFAAIAGLTGPMD-YLKEYMKKLKERRDYIYKRLNEI------PGISTTKPQG--------AFYIFPKIEVGPW-- 346 (406)
T ss_dssp CSHHHHHHHHHHHSCCH-HHHHHHHHHHHHHHHHHHHHHTS------TTEECCCCCB--------SSEECCEECSCSC--
T ss_pred CHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHHHHHHHHHhC------CCCeeecCCe--------eEEEEEecCccCC--
Confidence 55556666666653212 26788899999999999999987 3677765432 4566667653101
Q ss_pred cCHHHHHHHHh-hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHH
Q 010538 412 FGYREVEKLAS-LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKV 490 (508)
Q Consensus 412 ~~~~~l~~~L~-~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~ 490 (508)
.+..++.+.|. ++||.+++|..|... ..+++|||++ ++.+++++
T Consensus 347 ~~~~~l~~~l~~~~gi~v~~g~~f~~~---------------------------------~~~~lRis~~--~~~~~i~~ 391 (406)
T 1xi9_A 347 KNDKEFVLDVLHNAHVLFVHGSGFGEY---------------------------------GAGHFRAVFL--PPIEILEE 391 (406)
T ss_dssp SSHHHHHHHHHHHHCEECEEGGGGCGG---------------------------------GTTBEEEECC--SCHHHHHH
T ss_pred CCHHHHHHHHHHhCCEEEeCchhcCCC---------------------------------CCCEEEEEec--CCHHHHHH
Confidence 23455777775 899999988655321 2578999998 89999999
Q ss_pred HHHhhhhhhhh
Q 010538 491 NRCSSFDFVNF 501 (508)
Q Consensus 491 l~~~~~~~~~~ 501 (508)
+++.|+++++.
T Consensus 392 ~~~~l~~~l~~ 402 (406)
T 1xi9_A 392 AMDRFEKFMKE 402 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887653
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=8.5e-28 Score=248.12 Aligned_cols=325 Identities=13% Similarity=0.085 Sum_probs=229.4
Q ss_pred CCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc----CC--CCCCceEEEcCC
Q 010538 39 NGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF----NA--SMKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~--~~~~~~i~~t~g 111 (508)
++.++|+.+... ++++.+.+++.+.+ ... ...|..... ..++++.+++++ |+ +++ +|++|+|
T Consensus 41 ~~~i~l~~~~~~~~~~~~v~~a~~~~~-~~~----~~~y~~~~g----~~~lr~~la~~~~~~~g~~~~~~--~v~~~~g 109 (389)
T 1o4s_A 41 EDVINLTAGEPDFPTPEPVVEEAVRFL-QKG----EVKYTDPRG----IYELREGIAKRIGERYKKDISPD--QVVVTNG 109 (389)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHH-TTC----CCCCCCTTC----CHHHHHHHHHHHHHHHTCCCCGG--GEEEESH
T ss_pred CCEEEccCCCCCCCCCHHHHHHHHHHH-hcC----CCCCCCCCC----CHHHHHHHHHHHHHHhCCCCCHH--HEEEecC
Confidence 578999888765 34677777765544 221 112221111 244555555555 75 566 8999999
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc--cCccccccccccccccccchhhhhcC
Q 010538 112 ATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA--VDNDGLSESLVTSTKISLLPIQRRKG 189 (508)
Q Consensus 112 ~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~--~~~~~l~~~~~~~~~~~~d~~~l~~~ 189 (508)
+|+|+.+++.++ ..+|++|+++...|+++.... +..|.+++.+|.+.+ ..+ |+++++
T Consensus 110 ~t~al~~~~~~l-~~~gd~Vl~~~~~~~~~~~~~---~~~g~~~~~v~~~~~~~~~~---------------d~~~l~-- 168 (389)
T 1o4s_A 110 AKQALFNAFMAL-LDPGDEVIVFSPVWVSYIPQI---ILAGGTVNVVETFMSKNFQP---------------SLEEVE-- 168 (389)
T ss_dssp HHHHHHHHHHHH-CCTTCEEEEEESCCTTHHHHH---HHTTCEEEEEECCGGGTTCC---------------CHHHHH--
T ss_pred HHHHHHHHHHHh-CCCCCEEEEcCCCchhHHHHH---HHcCCEEEEEecCCccCCCC---------------CHHHHH--
Confidence 999999999998 678899999998888876544 456999999998742 233 688888
Q ss_pred CCCCCCCCCCCCceEEEEeCCCCCCccccC---HHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC---CCCCCC
Q 010538 190 ASFPERDPAGDAYNLFAFPSECNFSGSRFN---LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ---PPDLSK 263 (508)
Q Consensus 190 ~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~---i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~---~~d~~~ 263 (508)
+++ ++++++|++++++||||.++| +++|.++|++ +|+++|+|++|+.+.. +.++..
T Consensus 169 ~~l------~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~------------~~~~li~Dea~~~~~~~g~~~~~~~ 230 (389)
T 1o4s_A 169 GLL------VGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKK------------RNFYIISDEVYDSLVYTDEFTSILD 230 (389)
T ss_dssp HTC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH------------HTCEEEEECTTTTSBCSSCCCCHHH
T ss_pred Hhc------ccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHH------------cCCEEEEEccccccccCCCCCCHhh
Confidence 555 357899999999999999999 5666666665 9999999999986543 223221
Q ss_pred ----CCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHH
Q 010538 264 ----YPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIA 337 (508)
Q Consensus 264 ----~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~ 337 (508)
.+.|+++.|+||++| ++| +|++++++++++.+.+...++ . .+.+.....
T Consensus 231 ~~~~~~~~i~~~s~sK~~~-~~G~r~G~l~~~~~~~~~l~~~~~~~-----------------------~-~~~~~~~~~ 285 (389)
T 1o4s_A 231 VSEGFDRIVYINGFSKSHS-MTGWRVGYLISSEKVATAVSKIQSHT-----------------------T-SCINTVAQY 285 (389)
T ss_dssp HCSSSTTEEEEEESTTTTT-CGGGCCEEEECCHHHHHHHHHHHHHH-----------------------T-CSCCHHHHH
T ss_pred cCCCCCcEEEEeechhhcC-CcccceEEEEeCHHHHHHHHHHhhhc-----------------------c-cCCCHHHHH
Confidence 368999999999998 667 899999988877665432110 1 122333333
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHH
Q 010538 338 SIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREV 417 (508)
Q Consensus 338 ~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l 417 (508)
++ ...+.. +++++.+++.++++++.+.|+++ +++++.+.. +.++++.++ . +..++
T Consensus 286 a~---~~~l~~-~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~--------~~~~~~~~~-~-----~~~~l 340 (389)
T 1o4s_A 286 AA---LKALEV-DNSYMVQTFKERKNFVVERLKKM-------GVKFVEPEG--------AFYLFFKVR-G-----DDVKF 340 (389)
T ss_dssp HH---HHHTTC-CCHHHHHHHHHHHHHHHHHHHHT-------TCCCCCCSB--------SSEEEEECS-S-----CHHHH
T ss_pred HH---HHHHhc-cHHHHHHHHHHHHHHHHHHHHhc-------CCeeecCCc--------ceEEEEeCC-C-----CHHHH
Confidence 33 333333 48899999999999999999886 455554432 567777775 2 23457
Q ss_pred HHHHh-hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhh
Q 010538 418 EKLAS-LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 418 ~~~L~-~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~ 496 (508)
.+.|. ++||.+++|..|.. ++++|+|++. +.++++++++.|.
T Consensus 341 ~~~l~~~~gi~v~~g~~f~~-----------------------------------~~~~Ris~~~--~~~~l~~~l~~l~ 383 (389)
T 1o4s_A 341 CERLLEEKKVALVPGSAFLK-----------------------------------PGFVRLSFAT--SIERLTEALDRIE 383 (389)
T ss_dssp HHHHHHHHCEECEEGGGGTC-----------------------------------TTEEEEECCS--CHHHHHHHHHHHH
T ss_pred HHHHHHHCCEEEeCchhcCC-----------------------------------CCeEEEEEeC--CHHHHHHHHHHHH
Confidence 77775 89999998754321 4689999994 9999999999988
Q ss_pred hhhh
Q 010538 497 DFVN 500 (508)
Q Consensus 497 ~~~~ 500 (508)
++++
T Consensus 384 ~~l~ 387 (389)
T 1o4s_A 384 DFLN 387 (389)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 7653
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-28 Score=256.26 Aligned_cols=362 Identities=9% Similarity=-0.055 Sum_probs=248.2
Q ss_pred CCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCC-------ceEEEcCCh
Q 010538 40 GTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKD-------YKCIFTSGA 112 (508)
Q Consensus 40 ~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~-------~~i~~t~g~ 112 (508)
..-|+++-.++..++..+.+++...+. .....+..+.....+.+++.+++++++|.+.+. -..+||+|+
T Consensus 73 ~p~~~~~~~~~~~~~~~~~~~l~~~~n----~~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~gg 148 (475)
T 3k40_A 73 SPKFHAYFPTANSYPAIVADMLSGAIA----CIGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTA 148 (475)
T ss_dssp CTTBCCSSCCCCCHHHHHHHHHHHHHC----CCSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCH
T ss_pred CcCceeeCCCCCcHHHHHHHHHHHHhC----ccccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCch
Confidence 355888876666566666555544432 222234455667788888999999999997520 158999999
Q ss_pred HHHHHHHHhhcCC------------------CCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccc
Q 010538 113 TAALKLVGEAFPW------------------SHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLV 174 (508)
Q Consensus 113 t~al~~~~~~l~~------------------~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~ 174 (508)
|+++.+++.+... .++.+|+++..+|+++....++ .|++++.||.+.++ +
T Consensus 149 t~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~---~g~~~~~v~~d~~~-~-------- 216 (475)
T 3k40_A 149 SESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLL---GGVKLRSVQSENHR-M-------- 216 (475)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHH---HTCEEEEECCBTTB-C--------
T ss_pred HHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchHHHHHHHHH---cCCceEEEECCCCC-c--------
Confidence 9998877665421 1245899999999998776554 48999999998777 7
Q ss_pred cccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC
Q 010538 175 TSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC 254 (508)
Q Consensus 175 ~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~ 254 (508)
|+++++ ++|.+.......+.+|++++++|++|.+.|+++|.++|++ +|+++++|++++.
T Consensus 217 -------d~~~L~--~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~------------~~~~lhvD~A~~~ 275 (475)
T 3k40_A 217 -------RGAALE--KAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNK------------HNLWIHVDAAYAG 275 (475)
T ss_dssp -------CHHHHH--HHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH------------TTCEEEEECTTGG
T ss_pred -------CHHHHH--HHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHH------------hCCeEEEeHHhHH
Confidence 688888 6664321112237889999999999999999999999998 9999999999987
Q ss_pred CCCCCC-C----CC-CCCcEEEEeccccccCCCcceEEEEechhH-h-hh--ccccccCceEEecccchhhhhhccCccc
Q 010538 255 VTQPPD-L----SK-YPVDFVVMSFYKIFGYPTGLGALIMRNDAA-K-LL--KNTYFSGGTVAASIADIDFVKRRQGVEE 324 (508)
Q Consensus 255 g~~~~d-~----~~-~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~-~-~l--~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 324 (508)
+....+ . .. ..+|++++|+|||+++|.|+|+++++++.. . .+ .+.+.......... ++ ...
T Consensus 276 ~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~---~~------~~~ 346 (475)
T 3k40_A 276 SAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAP---DY------RHW 346 (475)
T ss_dssp GGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC----------------------------------
T ss_pred HHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCccccCCCcCCCCC---Cc------ccc
Confidence 643221 1 11 146999999999888899999999987642 1 11 11111110000000 00 011
Q ss_pred cccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEe
Q 010538 325 LFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNL 404 (508)
Q Consensus 325 ~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 404 (508)
..+.+.+ ...+.++++++.+...|++++.++..++++++.+.|+++ ++++++.++. .++++|++
T Consensus 347 ~~~~sr~--~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~------~g~~l~~~~~--------~~iv~f~~ 410 (475)
T 3k40_A 347 QIPLGRR--FRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVAD------SRFELAAEIN--------MGLVCFRL 410 (475)
T ss_dssp --CCCGG--GTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS------TTEEESSCCB--------TTEEEEEE
T ss_pred cccCCCc--ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC------CCEEEecCCc--------eEEEEEEe
Confidence 1222222 245677888888887889999999999999999999998 4799987653 78999998
Q ss_pred eCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecC-CCC
Q 010538 405 KRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFG-YMS 483 (508)
Q Consensus 405 ~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~-~~~ 483 (508)
++.+ ....++.+.|.++|+.+.... .. .....+|++++ +.+
T Consensus 411 ~~~~---~~~~~l~~~L~~~g~~~~~~~---~~--------------------------------~g~~~lR~~~~~~~t 452 (475)
T 3k40_A 411 KGSN---ERNEALLKRINGRGHIHLVPA---KI--------------------------------KDVYFLRMAICSRFT 452 (475)
T ss_dssp SSCH---HHHHHHHHHHHHHTSCBCEEE---EE--------------------------------TTEEEEEEECCCTTC
T ss_pred CCch---HHHHHHHHHHHhCCcEEEEee---EE--------------------------------CCEEEEEEEeCCCCC
Confidence 6531 122457788877776542210 00 01478999987 456
Q ss_pred CHHHHHHHHHhhhhhhhh
Q 010538 484 TFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 484 t~eev~~l~~~~~~~~~~ 501 (508)
|.+||++++++|+++.+.
T Consensus 453 t~~di~~~~~~i~~~~~~ 470 (475)
T 3k40_A 453 QSEDMEYSWKEVSAAADE 470 (475)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999987754
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-27 Score=239.39 Aligned_cols=355 Identities=8% Similarity=0.021 Sum_probs=233.5
Q ss_pred CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcC--CC
Q 010538 49 ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFP--WS 126 (508)
Q Consensus 49 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~--~~ 126 (508)
.+++++.+++++.+.+ ...+.+| ....+++++.+++++|++ ++++|+|+|+|+.+++.++. .+
T Consensus 8 ~~~~~~~v~~a~~~~~-~~~~~~~----------~~~~~~l~~~la~~~~~~----~v~~~~ggt~al~~~~~~~~~~~~ 72 (375)
T 2fnu_A 8 EPCLDKEDKKAVLEVL-NSKQLTQ----------GKRSLLFEEALCEFLGVK----HALVFNSATSALLTLYRNFSEFSA 72 (375)
T ss_dssp CCCCCHHHHHHHHHHH-TSSCCSS----------SHHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHSSCCCT
T ss_pred CCCCCHHHHHHHHHHH-HcCcccC----------ChHHHHHHHHHHHHhCCC----eEEEeCCHHHHHHHHHHHhcccCC
Confidence 4667888988876644 3222122 234678999999999986 59999999999999999985 67
Q ss_pred CCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEE
Q 010538 127 HQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFA 206 (508)
Q Consensus 127 ~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~ 206 (508)
+|++|+++...|+++...+. ..|++++.++.+.++.+ |+++++ +++ ++++++|+
T Consensus 73 ~gd~Vl~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~---------------d~~~l~--~~i------~~~~~~v~ 126 (375)
T 2fnu_A 73 DRNEIITTPISFVATANMLL---ESGYTPVFAGIKNDGNI---------------DELALE--KLI------NERTKAIV 126 (375)
T ss_dssp TSCEEEECSSSCTHHHHHHH---HTTCEEEECCBCTTSSB---------------CGGGSG--GGC------CTTEEEEE
T ss_pred CCCEEEECCCccHhHHHHHH---HCCCEEEEeccCCCCCC---------------CHHHHH--hhc------CcCceEEE
Confidence 88999999999988766544 46999999998765544 577888 554 45788888
Q ss_pred EeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCC--CCCCCCcEEEE--eccccccCCCc
Q 010538 207 FPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPD--LSKYPVDFVVM--SFYKIFGYPTG 282 (508)
Q Consensus 207 ~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d--~~~~~~D~~~~--S~~K~~g~P~G 282 (508)
++++ ||.+.|+++|.++|++ +|+++|+|++|+.|..+.. +..++ |+.+. |+||+++ | |
T Consensus 127 ~~~~---tG~~~~l~~i~~l~~~------------~~~~li~D~a~~~~~~~~~~~~~~~~-~i~~~s~s~~K~~~-~-g 188 (375)
T 2fnu_A 127 SVDY---AGKSVEVESVQKLCKK------------HSLSFLSDSSHALGSEYQNKKVGGFA-LASVFSFHAIKPIT-T-A 188 (375)
T ss_dssp EECG---GGCCCCHHHHHHHHHH------------HTCEEEEECTTCTTCEETTEETTSSS-SEEEEECCTTSSSC-C-S
T ss_pred EeCC---cCCccCHHHHHHHHHH------------cCCEEEEECccccCCeECCeeccccC-CeEEEeCCCCCCcc-c-c
Confidence 7776 9999999999999997 8999999999998876533 33332 45544 5559998 8 8
Q ss_pred ceEEEEe--chhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChh-HHHHHHHHHHHHHhcChHHHHHHHH
Q 010538 283 LGALIMR--NDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFL-SIASIRHGFNLINSLTVPAICRHIA 359 (508)
Q Consensus 283 ~G~l~~~--~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~-~~~~l~~al~~~~~~g~~~i~~~~~ 359 (508)
+|+++++ +++.+.+.+...++.. . .. ..+++.++.++. .+..+.+++.+....+++++.++.+
T Consensus 189 ~g~~~~~~~~~~~~~~~~~~~~~~~-~--~~-----------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 254 (375)
T 2fnu_A 189 EGGAVVTNDSELHEKMKLFRSHGML-K--KD-----------FFEGEVKSIGHNFRLNEIQSALGLSQLKKAPFLMQKRE 254 (375)
T ss_dssp SCEEEEESCHHHHHHHHHHTBTTEE-E--SS-----------SSCEEESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHH
T ss_pred CceEEEeCCHHHHHHHHHHHhcCCc-c--cc-----------ccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999995 4566666654333221 0 00 111111111110 1112222223323356888999999
Q ss_pred HHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCcc-CHHHHHHHHhhCCCeeccCCCCCchH
Q 010538 360 SLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWF-GYREVEKLASLSGIQLRTGCFCNPGA 438 (508)
Q Consensus 360 ~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~l~~~L~~~gI~v~~g~~~~~~~ 438 (508)
++++++.+.|+++ +++++..+.... .....++++.++.. .+ +..++.+.|.++||.++.+ |.+..
T Consensus 255 ~~~~~l~~~L~~~------~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~l~~~L~~~gi~v~~~--~~p~~ 320 (375)
T 2fnu_A 255 EAALTYDRIFKDN------PYFTPLHPLLKD---KSSNHLYPILMHQK---FFTCKKLILESLHKRGILAQVH--YKPIY 320 (375)
T ss_dssp HHHHHHHHHHTTC------SSEEESGGGCSS---CCCCSCEEEEECGG---GGGGHHHHHHHHHHTTEECBCC--CCCGG
T ss_pred HHHHHHHHHhhcC------CCccccCCCCCC---CcceEEEEEEeCcc---ccchHHHHHHHHHHCCCCcccc--ccccc
Confidence 9999999999987 368887652110 01134556676531 02 3356888999999999843 43221
Q ss_pred HHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 439 CAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 439 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
.+.+++.++...+-+ .......+.+||+++.++|.+|+++++++|+++++.+
T Consensus 321 -----------~~~~~~~~~~~~~~~-~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~ 372 (375)
T 2fnu_A 321 -----------QYQLYQQLFNTAPLK-SAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESF 372 (375)
T ss_dssp -----------GSHHHHHHHCCCCCH-HHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred -----------cchhhhcCCCccCCh-HHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 111111000000000 0000014789999999999999999999999887654
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.1e-28 Score=255.49 Aligned_cols=365 Identities=11% Similarity=-0.015 Sum_probs=246.2
Q ss_pred CCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCC-CccchhhhhhHHHHHHHHHHHHHcCCCCC-------CceEEEcCC
Q 010538 40 GTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPH-SQSDISLATCDIVRAAREQVLDYFNASMK-------DYKCIFTSG 111 (508)
Q Consensus 40 ~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~la~~~~~~~~-------~~~i~~t~g 111 (508)
...|+++..+++.++..+..++...+ |+. ..+..+.....+.+++++++++++|++.+ ...+++|+|
T Consensus 73 ~p~~~~~~~~~~~~~~~~~~~~~~~~-----n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~g 147 (486)
T 1js3_A 73 SPYFFAYFPTASSYPAMLADMLCGAI-----GCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGS 147 (486)
T ss_dssp STTBCSSSCCCCCHHHHHHHHHHHHH-----CCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESC
T ss_pred CCCceEeCCCCCCHHHHHHHHHHHHh-----CcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCC
Confidence 34688887766666666655555443 232 23444555677778899999999999742 016899999
Q ss_pred hHHHHHHHHhhcCCC--C------C---------C-eEEEecccccchHHHHHHHHhcCCeEEEEccCCccCcccccccc
Q 010538 112 ATAALKLVGEAFPWS--H------Q---------S-SYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESL 173 (508)
Q Consensus 112 ~t~al~~~~~~l~~~--~------g---------~-~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~ 173 (508)
+|+|+.+++.++... + | + +|+++...|+++....+. .|++++.||.+.++.+
T Consensus 148 gTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~---~G~~v~~v~~d~~~~~------- 217 (486)
T 1js3_A 148 ASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLI---GGVKLKAIPSDGKFAM------- 217 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHH---HTCEEEEECCCTTSCC-------
T ss_pred cHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHHh---CCCceEEeecCCCCCC-------
Confidence 999998887665211 0 2 2 378899999887665554 4999999999766666
Q ss_pred ccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEecccc
Q 010538 174 VTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKG 253 (508)
Q Consensus 174 ~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~ 253 (508)
|+++++ ++|.+....+..+.+|++++++|+||.+.|+++|.++|++ +|+++|+|++++
T Consensus 218 --------d~~~L~--~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~------------~~~~lhvD~a~g 275 (486)
T 1js3_A 218 --------RASALQ--EALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHE------------EDIWLHVDAAYA 275 (486)
T ss_dssp --------CHHHHH--HHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH------------TTCEEEEECTTG
T ss_pred --------CHHHHH--HHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHH------------cCCEEEEehhhH
Confidence 688888 5553210011122489999999999999999999999998 999999999998
Q ss_pred CCCCCC-CCCC-----CCCcEEEEeccccccCCCcceEEEEechh--Hhhhc--cccccCceEEecccchhhhhhccCcc
Q 010538 254 CVTQPP-DLSK-----YPVDFVVMSFYKIFGYPTGLGALIMRNDA--AKLLK--NTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 254 ~g~~~~-d~~~-----~~~D~~~~S~~K~~g~P~G~G~l~~~~~~--~~~l~--~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
.+.... ++.. .++|++++|+|||++.|.|+|+++++++. .+.+. +.+..+..... ....++. .
T Consensus 276 ~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~-~~~~~~~------~ 348 (486)
T 1js3_A 276 GSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGS-GLITDYR------H 348 (486)
T ss_dssp GGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------------C-CSCCCGG------G
T ss_pred HHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcceEEEEEeCHHHHHHHhcCCchhhCCCcccc-cCCCCcc------c
Confidence 766433 2221 26899999999998878899999998763 23332 21211110000 0000000 0
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEE
Q 010538 324 ELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFN 403 (508)
Q Consensus 324 ~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 403 (508)
.....+. .+ ...+++++++.+...|++++.+++.++++++.+.|+++ ++++++.++. .++++|+
T Consensus 349 ~~~~~~r-r~-~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~------~~~~~~~~~~--------~~~v~f~ 412 (486)
T 1js3_A 349 WQLPLGR-RF-RSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQD------PRFEVCAEVT--------LGLVCFR 412 (486)
T ss_dssp SSSCSCC-CC-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------TTEEECSCCC--------SSEEEEE
T ss_pred cCCCCCC-ch-hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC------CCeEEeCCCc--------eeEEEEE
Confidence 0111111 11 24567777777666789999999999999999999987 4799886543 6889998
Q ss_pred eeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEec-CCC
Q 010538 404 LKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSF-GYM 482 (508)
Q Consensus 404 ~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~-~~~ 482 (508)
+++.+ .+ ..++.+.|.++|+.+..+..+ + ..+++|+++ +.+
T Consensus 413 ~~~~~--~~-~~~l~~~L~~~g~~~~~~~~~---------------------------------~--~~~~lRi~~~~~~ 454 (486)
T 1js3_A 413 LKGSD--GL-NEALLERINSARKIHLVPCRL---------------------------------R--GQFVLRFAICSRK 454 (486)
T ss_dssp ESSCH--HH-HHHHHHHHHHHTSCBCEEEEE---------------------------------T--TEEEEEEECCCTT
T ss_pred ecChH--HH-HHHHHHHHHhcCCEEEEEEEE---------------------------------C--CEEEEEEEeCCCC
Confidence 86421 11 135777887788764332100 0 157899997 677
Q ss_pred CCHHHHHHHHHhhhhhhhhh
Q 010538 483 STFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 483 ~t~eev~~l~~~~~~~~~~~ 502 (508)
+|.+||+++++.|+++++.+
T Consensus 455 ~t~~di~~~~~~l~~~~~~~ 474 (486)
T 1js3_A 455 VESGHVRLAWEHIRGLAAEL 474 (486)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887654
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=252.81 Aligned_cols=340 Identities=13% Similarity=0.055 Sum_probs=236.5
Q ss_pred CCeeeeCCCCC--CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC--C-CCceEEEcCChHH
Q 010538 40 GTVYLDHAGAT--LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS--M-KDYKCIFTSGATA 114 (508)
Q Consensus 40 ~~iyld~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~--~-~~~~i~~t~g~t~ 114 (508)
+.+.|..+... ++++.+++++.+.+..... ..|.......++.+++.+.+++++|.+ + + +|++|+|+++
T Consensus 40 ~~id~~~g~~~~~~~~~~v~~a~~~~~~~~~~----~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~--~i~~~~g~~~ 113 (407)
T 3nra_A 40 RPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGV----QAYTEYRGDLGIRDLLAPRLAAFTGAPVDARD--GLIITPGTQG 113 (407)
T ss_dssp CCEETTSCCTTTSCCCTTHHHHHHHHHHHTHH----HHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTT--SEEEESHHHH
T ss_pred ceeeecCcCCCCCCCcHHHHHHHHHHHhcCCC----CCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCC--cEEEeCCcHH
Confidence 36788765433 4677788877654432100 011111224567788889999999984 2 5 7999999999
Q ss_pred HHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccC------CccCccccccccccccccccchhhhhc
Q 010538 115 ALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVE------EAVDNDGLSESLVTSTKISLLPIQRRK 188 (508)
Q Consensus 115 al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~------~~~~~~~l~~~~~~~~~~~~d~~~l~~ 188 (508)
|+.+++.++ ..+|++|+++...|+++. ..++..|++++.+|.+ ....+ |+++++
T Consensus 114 a~~~~~~~l-~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~---------------d~~~l~- 173 (407)
T 3nra_A 114 ALFLAVAAT-VARGDKVAIVQPDYFANR---KLVEFFEGEMVPVQLDYVSADETRAGL---------------DLTGLE- 173 (407)
T ss_dssp HHHHHHHTT-CCTTCEEEEEESCCTHHH---HHHHHTTCEEEEEEBCCCSSCCSSCCB---------------CHHHHH-
T ss_pred HHHHHHHHh-CCCCCEEEEcCCcccchH---HHHHHcCCEEEEeecccccccCcCCCc---------------CHHHHH-
Confidence 999999998 688999999887777655 4445579999999983 33333 678887
Q ss_pred CCCCCCCCCCCCCceEEEEeCCCCCCccccC---HHHHHHHHcCCccccccCCCCCCCeEEEEeccccCC----CCCCCC
Q 010538 189 GASFPERDPAGDAYNLFAFPSECNFSGSRFN---LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCV----TQPPDL 261 (508)
Q Consensus 189 ~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~---i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g----~~~~d~ 261 (508)
+++ .+++++|++++++||||.++| +++|.++|++ +|+++|+|++|+.+ ....++
T Consensus 174 -~~l------~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~------------~~~~li~Dea~~~~~~~g~~~~~~ 234 (407)
T 3nra_A 174 -EAF------KAGARVFLFSNPNNPAGVVYSAEEIGQIAALAAR------------YGATVIADQLYSRLRYAGASYTHL 234 (407)
T ss_dssp -HHH------HTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHH------------HTCEEEEECTTTTSBCTTCCCCCG
T ss_pred -HHH------hhCCcEEEEcCCCCCCCcccCHHHHHHHHHHHHH------------cCCEEEEEccccccccCCCCCCCh
Confidence 554 346789999999999999999 5666666665 99999999999862 222332
Q ss_pred C-----CCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChh
Q 010538 262 S-----KYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFL 334 (508)
Q Consensus 262 ~-----~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 334 (508)
. ..+.++++.|+||++| ++| +|++++++++++.+...... ...+.+..
T Consensus 235 ~~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~~~~~~~l~~~~~~------------------------~~~~~~~~ 289 (407)
T 3nra_A 235 RAEAAVDAENVVTIMGPSKTES-LSGYRLGVAFGSRAIIARMEKLQAI------------------------VSLRAAGY 289 (407)
T ss_dssp GGCTTSCGGGEEEEECSSSTTC-CGGGCCEEEEECHHHHHHHHHHHHH------------------------HTSSSCHH
T ss_pred hhcCcccCCcEEEEeCcccccC-CCeeeEEEEEcCHHHHHHHHHHHhh------------------------hccCCChH
Confidence 2 2346799999999998 546 79999998887766543110 11222333
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCH
Q 010538 335 SIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGY 414 (508)
Q Consensus 335 ~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 414 (508)
..+++.++++. ....+++..++++++++++.+.|+++ ++++++.+.. +.++++.++... .+.
T Consensus 290 ~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~------~~~~~~~~~~--------~~~~~~~~~~~~---~~~ 351 (407)
T 3nra_A 290 SQAVLRGWFDE-APGWMEDRIARHQAIRDELLHVLRGC------EGVFARTPQA--------GSYLFPRLPKLA---VAP 351 (407)
T ss_dssp HHGGGGGTTCC-CTTHHHHHHHHHHHHHHHHHHHHHTS------TTCBCCCCSB--------SSEECCBCCCBS---SCH
T ss_pred HHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHhcC------CCceeccCCe--------eEEEEEeCCCCC---CCH
Confidence 33333333321 11235778889999999999999887 3677665543 577777765421 234
Q ss_pred HHHHHHHh-hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHH
Q 010538 415 REVEKLAS-LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRC 493 (508)
Q Consensus 415 ~~l~~~L~-~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~ 493 (508)
.++.+.|. ++||.+++|..|.+. ..+++|+|++. |.++++++++
T Consensus 352 ~~~~~~l~~~~gi~v~~g~~~~~~---------------------------------~~~~iRis~~~--~~~~i~~~~~ 396 (407)
T 3nra_A 352 AEFVKILRLQAGVVVTPGTEFSPH---------------------------------TADSVRLNFSQ--DHEAAVAAAR 396 (407)
T ss_dssp HHHHHHHHHHHCEECEEGGGTCTT---------------------------------CTTBEEEECCS--CHHHHHHHHH
T ss_pred HHHHHHHHHhCCEEEeCchhhCCC---------------------------------CCCEEEEEeCC--CHHHHHHHHH
Confidence 55777775 569999998776532 26889999995 9999999999
Q ss_pred hhhhhhhhh
Q 010538 494 SSFDFVNFS 502 (508)
Q Consensus 494 ~~~~~~~~~ 502 (508)
.|+++++.+
T Consensus 397 ~l~~~~~~~ 405 (407)
T 3nra_A 397 RIVTLVERY 405 (407)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999887654
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-28 Score=251.03 Aligned_cols=340 Identities=11% Similarity=0.018 Sum_probs=229.9
Q ss_pred CCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCC--CccchhhhhhHHHHHHHHHHHHHcC--CCCCCceEEEcCChH
Q 010538 39 NGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPH--SQSDISLATCDIVRAAREQVLDYFN--ASMKDYKCIFTSGAT 113 (508)
Q Consensus 39 ~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~r~~la~~~~--~~~~~~~i~~t~g~t 113 (508)
++++.|..+... ++++.+.+++.+.+. .. ++. ..|.......++.+++.+.+.+.+| ++++ +|++|+|+|
T Consensus 35 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~-~~--~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~--~i~~~~g~~ 109 (398)
T 3ele_A 35 ENVYDFSIGNPSIPAPQIVNDTIKELVT-DY--DSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNAD--NLYMTMGAA 109 (398)
T ss_dssp GGCEECCSCCCCSCCCHHHHHHHHHHHH-HS--CHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGG--GEEEESSHH
T ss_pred CCeEEeecCCCCCCCCHHHHHHHHHHHh-cC--CccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChH--HEEEccCHH
Confidence 468888877654 456777776655432 21 110 0111111123444455555555556 5666 899999999
Q ss_pred HHHHHHHhhcCCCCC-CeEEEecccccchHHHHHHHHhcCCeEEEEccCCc-cCccccccccccccccccchhhhhcCCC
Q 010538 114 AALKLVGEAFPWSHQ-SSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA-VDNDGLSESLVTSTKISLLPIQRRKGAS 191 (508)
Q Consensus 114 ~al~~~~~~l~~~~g-~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~-~~~~~l~~~~~~~~~~~~d~~~l~~~~~ 191 (508)
+|+.+++.++ .++| ++|++....|+++. ..++..|.+++.+|.+.+ ..+ |+++++ ++
T Consensus 110 ~al~~~~~~l-~~~g~d~vl~~~p~~~~~~---~~~~~~g~~~~~v~~~~~~~~~---------------d~~~l~--~~ 168 (398)
T 3ele_A 110 ASLSICFRAL-TSDAYDEFITIAPYFPEYK---VFVNAAGARLVEVPADTEHFQI---------------DFDALE--ER 168 (398)
T ss_dssp HHHHHHHHHH-CCSTTCEEEEESSCCTHHH---HHHHHTTCEEEEECCCTTTSSC---------------CHHHHH--HT
T ss_pred HHHHHHHHHH-cCCCCCEEEEeCCCchhhH---HHHHHcCCEEEEEecCCcCCcC---------------CHHHHH--HH
Confidence 9999999998 6788 99998887776554 445567999999998753 233 688998 55
Q ss_pred CCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCC------CCeEEEEeccccC----C-CCCCC
Q 010538 192 FPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK------GRWMVLIDAAKGC----V-TQPPD 260 (508)
Q Consensus 192 l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~------~g~~vivD~a~~~----g-~~~~d 260 (508)
+ .+++++|++++++||||.++|.+++.++++ +|++ +|+++|+|++|+. | ..+..
T Consensus 169 l------~~~~~~v~~~~p~nptG~~~~~~~l~~l~~---------~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~ 233 (398)
T 3ele_A 169 I------NAHTRGVIINSPNNPSGTVYSEETIKKLSD---------LLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFV 233 (398)
T ss_dssp C------CTTEEEEEECSSCTTTCCCCCHHHHHHHHH---------HHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCG
T ss_pred h------CcCCCEEEEcCCCCCCCCCCCHHHHHHHHH---------HHHhhhhccCCCeEEEEeccccccccCCCCcCCh
Confidence 5 457899999999999999999888887766 5656 7999999999985 2 12222
Q ss_pred CCCCCCcEEEEeccccccCCCc--ceEEEEechhHhh--hccccccCceEEecccchhhhhhccCccccccCCCCChhHH
Q 010538 261 LSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKL--LKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSI 336 (508)
Q Consensus 261 ~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~--l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~ 336 (508)
....+.++++.|+||++| ++| +|+++++++..+. +...+.. + .......+++....
T Consensus 234 ~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~~~~~------------~-------~~~~~~~~~~~~~~ 293 (398)
T 3ele_A 234 TKYYDNTLVCYSYSKSLS-LPGERIGYVLVPDEVYDKAELYAAVCG------------A-------GRALGYVCAPSLFQ 293 (398)
T ss_dssp GGTCSSEEEEEESTTTSS-CTTTCCEEEECCTTSTTHHHHHHHHHH------------H-------HHHTTCCCSCHHHH
T ss_pred HhhcCCeEEEEehhhcCC-CccceeEEEEEcchhhhHHHHHHHHHH------------H-------hhhccccCCCHHHH
Confidence 234467799999999998 446 8999999875431 1111000 0 00111122333333
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHH
Q 010538 337 ASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYRE 416 (508)
Q Consensus 337 ~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 416 (508)
.++. ..+.... ..+++.++++++.+.|+++ +++++.+.. +.++++.+++. +..+
T Consensus 294 ~a~~---~~l~~~~---~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~--------~~~~~~~~~~~-----~~~~ 347 (398)
T 3ele_A 294 KMIV---KCQGATG---DINAYKENRDLLYEGLTRI-------GYHCFKPDG--------AFYMFVKALED-----DSNA 347 (398)
T ss_dssp HHHT---TCTTCCC---CHHHHHHHHHHHHHHHHHH-------TCCEECCSB--------SSEEEEECSSS-----CHHH
T ss_pred HHHH---HHhcCHH---HHHHHHHHHHHHHHHHHHc-------CCeecCCCe--------eEEEEEEcCCC-----CHHH
Confidence 3333 2222221 4677888999999999886 466665543 56688887653 2345
Q ss_pred HHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhh
Q 010538 417 VEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 417 l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~ 496 (508)
+.+.|.++||.+++|..|.. ++++|||++ ++.++++++++.|+
T Consensus 348 ~~~~l~~~gi~v~~g~~~~~-----------------------------------~~~iRis~~--~~~e~i~~~l~~l~ 390 (398)
T 3ele_A 348 FCEKAKEEDVLIVAADGFGC-----------------------------------PGWVRISYC--VDREMIKHSMPAFE 390 (398)
T ss_dssp HHHHHHTTTEECEESGGGTC-----------------------------------TTEEEEECC--SCHHHHHHHHHHHH
T ss_pred HHHHHHHCCEEEeCccccCC-----------------------------------CCeEEEEec--CCHHHHHHHHHHHH
Confidence 88889999999999875532 478999997 69999999999999
Q ss_pred hhhhhh
Q 010538 497 DFVNFS 502 (508)
Q Consensus 497 ~~~~~~ 502 (508)
++++.+
T Consensus 391 ~~l~~~ 396 (398)
T 3ele_A 391 KIYKKY 396 (398)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887654
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=8.7e-28 Score=249.86 Aligned_cols=344 Identities=12% Similarity=0.026 Sum_probs=237.5
Q ss_pred CCCeeeeCCC-----CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC------------CCC
Q 010538 39 NGTVYLDHAG-----ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN------------ASM 101 (508)
Q Consensus 39 ~~~iyld~~~-----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------------~~~ 101 (508)
++.++|+.+. ..++++.+.+++.+.+... ....|.. .....++|+.++++++ +++
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~----~~~~y~~----~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~ 104 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQ----ECNGYFP----TVGSPEAREAVATWWRNSFVHKEELKSTIVK 104 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTT----CSSSCCC----TTCCHHHHHHHHHHHHHHHCCSTTTGGGCCG
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCC----ccCCcCC----CCCCHHHHHHHHHHHHhhhcccccCCCCCCc
Confidence 4689998876 3566888888775544221 0111211 1124566778888877 667
Q ss_pred CCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCcccccccccccccccc
Q 010538 102 KDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISL 181 (508)
Q Consensus 102 ~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~ 181 (508)
+ +|++|+|+++|+.+++.++ .++|++|+++...|+++.. .++..|++++.+|.+.+... ..
T Consensus 105 ~--~v~~~~g~~~al~~~~~~l-~~~gd~vl~~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~-------------~~ 165 (416)
T 1bw0_A 105 D--NVVLCSGGSHGILMAITAI-CDAGDYALVPQPGFPHYET---VCKAYGIGMHFYNCRPENDW-------------EA 165 (416)
T ss_dssp G--GEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTHHHH---HHHHTTCEEEEEEEEGGGTT-------------EE
T ss_pred c--eEEEeCChHHHHHHHHHHh-CCCCCEEEEcCCCcHhHHH---HHHHcCcEEEEeecCcccCC-------------CC
Confidence 7 8999999999999999998 6788999999888877654 44567999999987643111 11
Q ss_pred chhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC---HHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----
Q 010538 182 LPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN---LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC---- 254 (508)
Q Consensus 182 d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~---i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~---- 254 (508)
|+++++ +++ .++++++++++++||||.++| +++|.++|++ +|+++|+|++|+.
T Consensus 166 d~~~l~--~~l------~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~------------~~~~li~De~~~~~~~~ 225 (416)
T 1bw0_A 166 DLDEIR--RLK------DDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEE------------LRLPLFSDEIYAGMVFK 225 (416)
T ss_dssp CHHHHH--HHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH------------HTCCEEEECTTTTCBCC
T ss_pred CHHHHH--HHh------ccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHH------------cCCEEEEEccccccccC
Confidence 678888 554 356899999999999999999 6666666665 9999999999986
Q ss_pred CC----CCCCCCCC---CCcEEEEeccccccCCCc--ceEEEEech--hHhhhccccccCceEEecccchhhhhhccCcc
Q 010538 255 VT----QPPDLSKY---PVDFVVMSFYKIFGYPTG--LGALIMRND--AAKLLKNTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 255 g~----~~~d~~~~---~~D~~~~S~~K~~g~P~G--~G~l~~~~~--~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
|. ...++... +.++++.|+||+|+.| | +|+++++++ .++.+.+... .
T Consensus 226 g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-Glr~G~~~~~~~~~~~~~~~~~~~---------------------~ 283 (416)
T 1bw0_A 226 GKDPNATFTSVADFETTVPRVILGGTAKNLVVP-GWRLGWLLYVDPHGNGPSFLEGLK---------------------R 283 (416)
T ss_dssp SSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCG-GGCCEEEEEECTTCSCHHHHHHHH---------------------H
T ss_pred CCCCCCCccCHHHccCCCcEEEEecchhhCCCC-CceEEEEEeeCchhhHHHHHHHHH---------------------H
Confidence 32 22334332 2357889999998834 6 799999874 4333321100 0
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEE
Q 010538 324 ELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFN 403 (508)
Q Consensus 324 ~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 403 (508)
.....++++....+++.++++...+.+++++.++++++++++.+.|+++ ++++++.+.. ++++++.
T Consensus 284 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------~g~~~~~~~~--------~~~~~~~ 349 (416)
T 1bw0_A 284 VGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGEC------IGLAPTMPRG--------AMYLMSR 349 (416)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTS------TTEEECCCCB--------TTEEEEE
T ss_pred HhccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhC------CCCcccCCCe--------eEEEEEe
Confidence 0011245666667777777764223357888899999999999999887 3688765543 6788888
Q ss_pred eeCCC-CCccCHHHHHHHH-hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCC
Q 010538 404 LKRPD-GSWFGYREVEKLA-SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGY 481 (508)
Q Consensus 404 ~~~~~-~~~~~~~~l~~~L-~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~ 481 (508)
++... ....+..++.+.| +++||.+++|..|.. ++++|||++
T Consensus 350 ~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~-----------------------------------~~~iRis~~- 393 (416)
T 1bw0_A 350 IDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHA-----------------------------------PGFTRLTTT- 393 (416)
T ss_dssp ECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTC-----------------------------------TTEEEEECC-
T ss_pred CCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCC-----------------------------------CCeEEEEec-
Confidence 75310 0001334566666 689999998764421 478999996
Q ss_pred CCCHHHHHHHHHhhhhhhhhh
Q 010538 482 MSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 482 ~~t~eev~~l~~~~~~~~~~~ 502 (508)
++.++++.+++.|.++++..
T Consensus 394 -~~~e~l~~~l~~l~~~l~~~ 413 (416)
T 1bw0_A 394 -RPVEVYREAVERIKAFCQRH 413 (416)
T ss_dssp -SCHHHHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHHh
Confidence 68999999999998877543
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=245.19 Aligned_cols=337 Identities=11% Similarity=0.050 Sum_probs=229.9
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCC--CCCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA--SMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~--~~~~~~i~~t~g~t~a 115 (508)
++.++|+.+.... +++.+.+++.+...... ..|.......++.+++.+.+.+.+|+ +++ +|++|+|+|+|
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-----~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~--~v~~~~g~~~a 102 (388)
T 1j32_A 30 IDVCSFSAGEPDFNTPKHIVEAAKAALEQGK-----TRYGPAAGEPRLREAIAQKLQRDNGLCYGAD--NILVTNGGKQS 102 (388)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHHTTC-----CSCCCTTCCHHHHHHHHHHHHHHHCCCCCGG--GEEEESHHHHH
T ss_pred CCEEECCCCCCCCCCCHHHHHHHHHHHhcCC-----CCCCCCCCCHHHHHHHHHHHHHhcCCCCChh--hEEEcCCHHHH
Confidence 5688888876543 46677776655432211 11221111234444455555555564 556 89999999999
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc--cCccccccccccccccccchhhhhcCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA--VDNDGLSESLVTSTKISLLPIQRRKGASFP 193 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~--~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~ 193 (508)
+.+++.++ .++|++|+++...|+++... ++..|.+++.+|.+.+ ..+ |+++++ +++
T Consensus 103 ~~~~~~~~-~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~---------------d~~~l~--~~l- 160 (388)
T 1j32_A 103 IFNLMLAM-IEPGDEVIIPAPFWVSYPEM---VKLAEGTPVILPTTVETQFKV---------------SPEQIR--QAI- 160 (388)
T ss_dssp HHHHHHHH-CCTTCEEEEESSCCTHHHHH---HHHTTCEEEEECCCGGGTTCC---------------CHHHHH--HHC-
T ss_pred HHHHHHHh-cCCCCEEEEcCCCChhHHHH---HHHcCCEEEEecCCcccCCCC---------------CHHHHH--Hhc-
Confidence 99999998 67899999999888876544 4457999999998742 233 678888 555
Q ss_pred CCCCCCCCceEEEEeCCCCCCccccC---HHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC----CCCCCC---
Q 010538 194 ERDPAGDAYNLFAFPSECNFSGSRFN---LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ----PPDLSK--- 263 (508)
Q Consensus 194 ~~~~~~~~t~lv~~~~~~n~tG~~~~---i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~----~~d~~~--- 263 (508)
.+++++|++++++||||.++| +++|.++|++ +|+++|+|++|+.... ..++..
T Consensus 161 -----~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~------------~~~~li~De~~~~~~~~~~~~~~~~~~~~ 223 (388)
T 1j32_A 161 -----TPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVE------------AGLWVLSDEIYEKILYDDAQHLSIGAASP 223 (388)
T ss_dssp -----CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH------------HTCEEEEECTTTTCBCTTCCCCCGGGSCH
T ss_pred -----CcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHH------------cCCEEEEEccchhcccCCCCCCCHHHccc
Confidence 357899999999999999988 5555666665 9999999999976332 222222
Q ss_pred --CCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHH
Q 010538 264 --YPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASI 339 (508)
Q Consensus 264 --~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l 339 (508)
.+.|+++.|+||++| ++| +|++++++++++.+.+...++ . .+.+....+++
T Consensus 224 ~~~~~~~~~~s~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~~~~-----------------------~-~~~~~~~~~a~ 278 (388)
T 1j32_A 224 EAYERSVVCSGFAKTYA-MTGWRVGFLAGPVPLVKAATKIQGHS-----------------------T-SNVCTFAQYGA 278 (388)
T ss_dssp HHHHTEEEEEESTTTTT-CTTTCCEEEECCHHHHHHHHHHHHTT-----------------------T-CSCCHHHHHHH
T ss_pred cccCCEEEEeechhccC-CcccceEEEEeCHHHHHHHHHHHhhc-----------------------c-cCCCHHHHHHH
Confidence 347899999999998 668 899999998877665431111 1 12233333333
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHH
Q 010538 340 RHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEK 419 (508)
Q Consensus 340 ~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~ 419 (508)
.++++.. +..++++.+++.++++++.+.|+++ +++++..+.. +.++++.++.. + .+..++.+
T Consensus 279 ~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~------~g~~~~~~~~--------~~~~~~~~~~~-~--~~~~~~~~ 340 (388)
T 1j32_A 279 IAAYENS-QDCVQEMLAAFAERRRYMLDALNAM------PGLECPKPDG--------AFYMFPSIAKT-G--RSSLDFCS 340 (388)
T ss_dssp HHHHHSC-SHHHHHHHHHHHHHHHHHHHHHHTC------TTCBCCCCCB--------TTEECCBCGGG-T--CCHHHHHH
T ss_pred HHHHhCC-cHHHHHHHHHHHHHHHHHHHHHhhC------CCCcccCCCe--------eEEEEEecCCC-C--CCHHHHHH
Confidence 3444421 2236778889999999999999887 3676665432 45566666431 1 23455777
Q ss_pred HHhh-CCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 420 LASL-SGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 420 ~L~~-~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
.|.+ +||.+++|..|.. ++++|+|++ ++.++++++++.|+++
T Consensus 341 ~l~~~~gi~v~~g~~~~~-----------------------------------~~~iRis~~--~~~~~i~~~~~~l~~~ 383 (388)
T 1j32_A 341 ELLDQHQVATVPGAAFGA-----------------------------------DDCIRLSYA--TDLDTIKRGMERLEKF 383 (388)
T ss_dssp HHHHHHCEECEEGGGGTC-----------------------------------TTBEEEECC--SCHHHHHHHHHHHHHH
T ss_pred HHHHhCCEEEeChhhhCC-----------------------------------CCcEEEEec--CCHHHHHHHHHHHHHH
Confidence 7764 7999998764321 468999997 6999999999999887
Q ss_pred hhh
Q 010538 499 VNF 501 (508)
Q Consensus 499 ~~~ 501 (508)
++.
T Consensus 384 l~~ 386 (388)
T 1j32_A 384 LHG 386 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-28 Score=252.38 Aligned_cols=345 Identities=14% Similarity=0.052 Sum_probs=233.6
Q ss_pred CCCeeeeCCCCCC---CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGATL---YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~a 115 (508)
+++++|+.+...+ +++.+.+++.+.+ ...... ...|.. .....++++.+++++|++++ +|++|+|+++|
T Consensus 32 ~~~i~l~~g~~~~~~~~~~~v~~a~~~~~-~~~~~~-~~~y~~----~~~~~~l~~~la~~~g~~~~--~v~~~~g~~~a 103 (397)
T 2zyj_A 32 PGILSFAGGLPAPELFPKEEAAEAAARIL-REKGEV-ALQYSP----TEGYAPLRAFVAEWIGVRPE--EVLITTGSQQA 103 (397)
T ss_dssp TTCEEESSCCCCGGGCCHHHHHHHHHHHH-HHHHHH-HTSCCC----TTCCHHHHHHHHHHHTSCGG--GEEEESHHHHH
T ss_pred CCceecCCCCCCchhCCHHHHHHHHHHHH-Hhcchh-hhCCCC----CCCCHHHHHHHHHHhCCChh--hEEEeccHHHH
Confidence 5788998765432 3555666554433 211000 001111 11246788999999998877 89999999999
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPER 195 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~ 195 (508)
+.+++.++ .++|++|++....|+++. ..++..|.+++.+|.+.++ + |+++++ +++++
T Consensus 104 l~~~~~~~-~~~gd~Vl~~~p~y~~~~---~~~~~~g~~~~~~~~~~~~-~---------------d~~~l~--~~l~~- 160 (397)
T 2zyj_A 104 LDLVGKVF-LDEGSPVLLEAPSYMGAI---QAFRLQGPRFLTVPAGEEG-P---------------DLDALE--EVLKR- 160 (397)
T ss_dssp HHHHHHHH-CCTTCEEEEEESCCHHHH---HHHHTTCCEEEEEEEETTE-E---------------CHHHHH--HHHHH-
T ss_pred HHHHHHHh-CCCCCEEEEeCCCcHHHH---HHHHHcCCEEEecCcCCCC-C---------------CHHHHH--HHHhh-
Confidence 99999998 578899998876666554 4455679999999886543 3 577777 44421
Q ss_pred CCCCCCceEE-EEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC----CCCCCCCCC-----
Q 010538 196 DPAGDAYNLF-AFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT----QPPDLSKYP----- 265 (508)
Q Consensus 196 ~~~~~~t~lv-~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~----~~~d~~~~~----- 265 (508)
.++++| ++++++||||.++|.+.+.++++ +|+++|+++|+|++|+.+. .+.++..++
T Consensus 161 ----~~~~~v~~~~~~~nptG~~~~~~~l~~l~~---------~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~ 227 (397)
T 2zyj_A 161 ----ERPRFLYLIPSFQNPTGGLTPLPARKRLLQ---------MVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGY 227 (397)
T ss_dssp ----CCCSCEEECCBSCTTTCCBCCHHHHHHHHH---------HHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTC
T ss_pred ----cCCeEEEECCCCcCCCCCcCCHHHHHHHHH---------HHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCC
Confidence 256777 57999999999999884444443 3334999999999998633 234444333
Q ss_pred -CcEEEEeccccccCCC-cceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHH
Q 010538 266 -VDFVVMSFYKIFGYPT-GLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGF 343 (508)
Q Consensus 266 -~D~~~~S~~K~~g~P~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al 343 (508)
..+++.|+||+++ |+ ++|++++++++++.+.+... .+..++ +.....++.+++
T Consensus 228 ~~~i~~~s~sK~~~-~G~r~G~~~~~~~~~~~l~~~~~-----------------------~~~~~~-~~~~~~a~~~~l 282 (397)
T 2zyj_A 228 PGVIYLGSFSKVLS-PGLRVAFAVAHPEALQKLVQAKQ-----------------------GADLHT-PMLNQMLVHELL 282 (397)
T ss_dssp CCEEEEEESTTTTC-GGGCCEEEECCHHHHHHHHHHHH-----------------------HHHSSC-CHHHHHHHHHHH
T ss_pred CeEEEEeccccccc-ccceeEEEecCHHHHHHHHHHHH-----------------------hhcCCC-CHHHHHHHHHHH
Confidence 3388999999999 72 37999999888776654311 111233 444444444444
Q ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCc-eEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHh
Q 010538 344 NLINSLTVPAICRHIASLGMYVRKVLLSLRHENGAD-VCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLAS 422 (508)
Q Consensus 344 ~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~ 422 (508)
+......++++.+++.++++++.+.|++.. + ++++..+.. +.+++++++.. .+..++.+.|.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-----~~g~~~~~~~~--------g~~~~~~~~~~----~~~~~~~~~l~ 345 (397)
T 2zyj_A 283 KEGFSERLERVRRVYREKAQAMLHALDREV-----PKEVRYTRPKG--------GMFVWMELPKG----LSAEGLFRRAL 345 (397)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHS-----CTTSEECCCSB--------SSEEEEECSTT----CCHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCeEEccCCc--------cEEEEEEcCCC----CCHHHHHHHHH
Confidence 421101367788888999999999997631 2 477665543 68888888642 34456888888
Q ss_pred hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 423 LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 423 ~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
++||.+++|..|.... ...+++|||++.. |.+|++++++.|+++++.
T Consensus 346 ~~gi~v~~g~~f~~~~-------------------------------~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~ 392 (397)
T 2zyj_A 346 EENVAFVPGGPFFANG-------------------------------GGENTLRLSYATL-DREGIAEGVRRLGRALKG 392 (397)
T ss_dssp HTTEEEEESGGGCTTS-------------------------------CCTTEEEEECSSS-CHHHHHHHHHHHHHHHHH
T ss_pred HCCCEEechHHhcCCC-------------------------------CCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHH
Confidence 8899999987554310 1257899999986 999999999999987653
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-27 Score=245.09 Aligned_cols=351 Identities=11% Similarity=0.006 Sum_probs=234.1
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC------CCC-CCceEEEcC
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN------ASM-KDYKCIFTS 110 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------~~~-~~~~i~~t~ 110 (508)
++.|+|+.+.... +++.+.+++.+.+..... ..|..... ..++++.++++++ +++ + +|++|+
T Consensus 23 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~----~~y~~~~g----~~~l~~~la~~~~~~~~~~~~~~~--~i~~~~ 92 (410)
T 3e2y_A 23 PSVVNLGQGFPDISPPSYVKEELSKAAFIDNM----NQYTRGFG----HPALVKALSCLYGKIYQRQIDPNE--EILVAV 92 (410)
T ss_dssp TTSEECSSCCCCSCCCHHHHHHHHHHHTCGGG----GSCCCTTC----CHHHHHHHHHHHHHHHTSCCCTTT--SEEEES
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhCccc----cCCCCCCC----hHHHHHHHHHHHHHHhCCCCCCCC--CEEEeC
Confidence 6799999988663 567777776554322100 01111111 2344555555554 555 5 799999
Q ss_pred ChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc---cCccccccccccccccccchhhhh
Q 010538 111 GATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA---VDNDGLSESLVTSTKISLLPIQRR 187 (508)
Q Consensus 111 g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~---~~~~~l~~~~~~~~~~~~d~~~l~ 187 (508)
|+++|+.+++.++ .++|++|++....|+++... ++..|.+++.+|.+.. +... .......|+++++
T Consensus 93 g~~~a~~~~~~~~-~~~gd~vl~~~p~~~~~~~~---~~~~g~~~~~~~~~~~~~~g~~~-------~~~~~~~d~~~l~ 161 (410)
T 3e2y_A 93 GAYGSLFNSIQGL-VDPGDEVIIMVPFYDCYEPM---VRMAGAVPVFIPLRSKPTDGMKW-------TSSDWTFDPRELE 161 (410)
T ss_dssp HHHHHHHHHHHHH-CCTTCEEEEEESCCTTHHHH---HHHTTCEEEEEECEECCCCSSCC-------BGGGEECCHHHHH
T ss_pred CcHHHHHHHHHHh-cCCCCEEEEeCCCchhhHHH---HHHcCCEEEEEeccccccccccc-------cccCCcCCHHHHH
Confidence 9999999999998 67889999988777766544 4456999999987621 0000 0001122788998
Q ss_pred cCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCCCCCCC
Q 010538 188 KGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQPPDLSK 263 (508)
Q Consensus 188 ~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d~~~ 263 (508)
+++ .+++++|++++++||||.+++.+.+.++++ +|+++|+++|+|++|+. |..+.++..
T Consensus 162 --~~~------~~~~~~v~~~~p~nptG~~~~~~~l~~l~~---------~~~~~~~~li~De~~~~~~~~~~~~~~~~~ 224 (410)
T 3e2y_A 162 --SKF------SSKTKAIILNTPHNPLGKVYTRQELQVIAD---------LCVKHDTLCISDEVYEWLVYTGHTHVKIAT 224 (410)
T ss_dssp --TTC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHH---------HHHHHTCEEEEECTTTTCBCTTCCCCCGGG
T ss_pred --hhc------CCCceEEEEeCCCCCCCcCcCHHHHHHHHH---------HHHHcCcEEEEEhhhhhcccCCCCCCCHHH
Confidence 555 457899999999999999986555555544 34449999999999975 323333332
Q ss_pred C----CCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHH
Q 010538 264 Y----PVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIA 337 (508)
Q Consensus 264 ~----~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~ 337 (508)
. +.++++.|++|.+| ++| +|++++++++++.+..... ....+.+.....
T Consensus 225 ~~~~~~~~i~~~S~sK~~g-~~G~r~G~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~ 279 (410)
T 3e2y_A 225 LPGMWERTITIGSAGKTFS-VTGWKLGWSIGPAHLIKHLQTVQQ------------------------NSFYTCATPLQA 279 (410)
T ss_dssp STTCGGGEEEEEEHHHHSS-CGGGCCEEEECCHHHHHHHHHHHH------------------------TTTCCCCHHHHH
T ss_pred cCCccCeEEEEecchhhcC-CCCceEEEEEECHHHHHHHHHHHH------------------------hhccCCChHHHH
Confidence 2 34589999999998 556 8999999988776653311 112344555566
Q ss_pred HHHHHHHHH------HhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCc
Q 010538 338 SIRHGFNLI------NSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSW 411 (508)
Q Consensus 338 ~l~~al~~~------~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 411 (508)
++.++++.. ....++.+.++++++++++.+.|+++ ++++..+.. +.++++.+......
T Consensus 280 a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~--------~~~~~~~~~~~~~~- 343 (410)
T 3e2y_A 280 ALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSV-------GLKPIVPDG--------GYFIIADVSSLGAD- 343 (410)
T ss_dssp HHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-------TCEEEBCSB--------SSEEEEECGGGCCC-
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHC-------CCeecCCCc--------cEEEEEEchhhhcc-
Confidence 666666521 12346888899999999999999987 577766644 67888887642211
Q ss_pred cC--------HHHHH-HHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC
Q 010538 412 FG--------YREVE-KLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM 482 (508)
Q Consensus 412 ~~--------~~~l~-~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 482 (508)
++ ..++. ++++++||.+.+|..|..+... ....+++|||++.
T Consensus 344 ~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~----------------------------~~~~~~iRis~~~- 394 (410)
T 3e2y_A 344 LSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSK----------------------------PHFEKLVRFCFIK- 394 (410)
T ss_dssp CTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTH----------------------------HHHTTEEEEECCC-
T ss_pred cccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCC----------------------------CCCCCEEEEEEcC-
Confidence 11 11344 4567889999999877542100 0025899999886
Q ss_pred CCHHHHHHHHHhhhhh
Q 010538 483 STFEDAKVNRCSSFDF 498 (508)
Q Consensus 483 ~t~eev~~l~~~~~~~ 498 (508)
|.++++++++.|+++
T Consensus 395 -~~e~l~~~l~~l~~~ 409 (410)
T 3e2y_A 395 -KDSTLDAAEEIFRAW 409 (410)
T ss_dssp -CHHHHHHHHHHHHTC
T ss_pred -CHHHHHHHHHHHHhc
Confidence 999999999998764
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-27 Score=243.37 Aligned_cols=333 Identities=15% Similarity=0.065 Sum_probs=225.6
Q ss_pred CCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCC-CCccchhhhhhHHHHHHHHHHHHH--cC-CCCCCceEEEcCChH
Q 010538 39 NGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNP-HSQSDISLATCDIVRAAREQVLDY--FN-ASMKDYKCIFTSGAT 113 (508)
Q Consensus 39 ~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~la~~--~~-~~~~~~~i~~t~g~t 113 (508)
++.++|+.+... ++++.+.+++.+.+ ....... ...|.. .....++|+.++++ .| ++++ +|++|+|++
T Consensus 33 ~~~i~l~~~~~~~~~~~~v~~a~~~~~-~~~~~~~~~~~y~~----~~g~~~lr~~la~~l~~g~~~~~--~v~~~~G~~ 105 (400)
T 3asa_A 33 HTVINLSIGDTTQPLNASVAEAFASSI-ARLSSPTTCRGYGP----DFGLPALRQKLSEDFYRGFVDAK--EIFISDGAK 105 (400)
T ss_dssp SCCEECSSCCCCCCCCHHHHHHHHHHH-HHHTSSSCCCCCCC----TTCCHHHHHHHHHTTSTTSSCGG--GEEEESCHH
T ss_pred CceEeccCCCCCCCCCHHHHHHHHHHH-hcccccccccCCCC----CCCCHHHHHHHHHHHHcCCCCHH--HEEEccChH
Confidence 578999988765 45777777765533 2221111 112211 12246788999999 47 6777 899999999
Q ss_pred HHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCe-EEEEccCCccCccccccccccccccccchhhhhcCCCC
Q 010538 114 AALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAA-AFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASF 192 (508)
Q Consensus 114 ~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~-v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l 192 (508)
++++++...+ .+|++|++....|+++. ..++..|.+ ++.+|.+.++.+. .+++
T Consensus 106 ~al~~~~~~~--~~gd~Vl~~~p~y~~~~---~~~~~~g~~~~~~~~~~~~~~~~----------------~~l~----- 159 (400)
T 3asa_A 106 VDLFRLLSFF--GPNQTVAIQDPSYPAYL---DIARLTGAKEIIALPCLQENAFF----------------PEFP----- 159 (400)
T ss_dssp HHHHHHHHHH--CSSCEEEEEESCCHHHH---HHHHHTTCSEEEEEECCGGGTTC----------------CCCC-----
T ss_pred HHHHHHHHHc--CCCCEEEECCCCcHHHH---HHHHHcCCcceEecccchhcCcc----------------cChh-----
Confidence 9999977654 57899998886666554 445557888 9999987543331 0122
Q ss_pred CCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEecccc-C---CCCCCCCCCC----
Q 010538 193 PERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKG-C---VTQPPDLSKY---- 264 (508)
Q Consensus 193 ~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~-~---g~~~~d~~~~---- 264 (508)
. .+++++|++++++||||.++|.+++.++++ +|+++|+++|+|++|+ + +..+.++..+
T Consensus 160 ---~--~~~~~~v~l~~p~nptG~~~~~~~l~~l~~---------~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 225 (400)
T 3asa_A 160 ---E--DTHIDILCLCSPNNPTGTVLNKDQLRAIVH---------YAIEHEILILFDAAYSTFISDPSLPKSIFEIPDAR 225 (400)
T ss_dssp ---T--TCCCSEEEEESSCTTTCCCCCHHHHHHHHH---------HHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGG
T ss_pred ---h--ccCccEEEEeCCCCCCCCcCCHHHHHHHHH---------HHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCC
Confidence 1 146799999999999999999776655554 3444999999999998 3 2233444333
Q ss_pred CCcEEEEeccccccCCCc--ceEEEEechhH-------hhhccccccCceEEecccchhhhhhccCccccccCCCCChhH
Q 010538 265 PVDFVVMSFYKIFGYPTG--LGALIMRNDAA-------KLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLS 335 (508)
Q Consensus 265 ~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~-------~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~ 335 (508)
+.++++.|++|++| ++| +|+++++++.. +.+... ......++.+...
T Consensus 226 ~~~i~~~s~sK~~g-~~GlriG~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~ 281 (400)
T 3asa_A 226 FCAIEINSFSKPLG-FAGIRLGWTVIPQELTYADGHFVIQDWER-----------------------FLSTTFNGASIPA 281 (400)
T ss_dssp GTEEEEEECCGGGT-TTTCCCEEEECCTTCBCTTSCBHHHHHHH-----------------------HHHHHCCCCCHHH
T ss_pred CceEEEecchhhcC-CcchheeEEeeChhhccchhhhHHHHHHH-----------------------HhccCccCCChHH
Confidence 24588999999998 567 79999988762 222110 0111124556666
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEE-eeC-CCCCccC
Q 010538 336 IASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFN-LKR-PDGSWFG 413 (508)
Q Consensus 336 ~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~~~~ 413 (508)
..++.++++. ..+++++++++++++++.+.|+++ ++++..+.. +++++++ ++. .+...
T Consensus 282 ~~a~~~~l~~---~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~--------~~~~~~~~~~~~~~~~~-- 341 (400)
T 3asa_A 282 QEAGVAGLSI---LPQLEAIHYYRENSDLLRKALLAT-------GFEVFGGEH--------APYLWVKPTQANISDRD-- 341 (400)
T ss_dssp HHHHHHHHHH---TTTCHHHHHHHHHHHHHHHHHHHT-------TCEEEECSS--------SSEEEEECCCTTCCTTT--
T ss_pred HHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHC-------CCeeeCCCC--------ceEEEEeccCCCCCHHH--
Confidence 6666656653 257888999999999999999886 577765533 6889998 763 22222
Q ss_pred HHHHHHHH-hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHH
Q 010538 414 YREVEKLA-SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNR 492 (508)
Q Consensus 414 ~~~l~~~L-~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~ 492 (508)
+.+.| +++||.+++|..|... .++++|||+ ++|.+++++++
T Consensus 342 ---~~~~l~~~~gv~v~~g~~f~~~---------------------------------~~~~iRis~--~~~~e~i~~~l 383 (400)
T 3asa_A 342 ---LFDFFLREYHIAITPGIGFGRS---------------------------------GSGFVRFSS--LGKREDILAAC 383 (400)
T ss_dssp ---HHHHHHHHHSEECEEGGGGCGG---------------------------------GTTCEEEEC--CSCHHHHHHHH
T ss_pred ---HHHHHHHhCCEEEeChhHhCCC---------------------------------CCCEEEEEe--eCCHHHHHHHH
Confidence 55555 5679999998766432 157899994 68999999999
Q ss_pred Hhhhhhhh
Q 010538 493 CSSFDFVN 500 (508)
Q Consensus 493 ~~~~~~~~ 500 (508)
+.|+++++
T Consensus 384 ~~l~~~~~ 391 (400)
T 3asa_A 384 ERLQMAPA 391 (400)
T ss_dssp HHHHC---
T ss_pred HHHHHHHH
Confidence 99988764
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-27 Score=242.00 Aligned_cols=352 Identities=8% Similarity=0.013 Sum_probs=230.5
Q ss_pred chHHHHHHhhccCCCCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhH-HHHHHHHHHHHHcC--CC
Q 010538 25 SIDQIRATEFKRLENGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCD-IVRAAREQVLDYFN--AS 100 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~~la~~~~--~~ 100 (508)
.|+...+ .|. . +++++|+.+... .+++.+.+++.+.+ .. ....|... ..+ +.+++.+.+.+.+| ++
T Consensus 17 ~~d~~~~-~~~-~-~~~i~l~~~~~~~~~~~~v~~a~~~~~-~~----~~~~y~~~--~~~~lr~~la~~l~~~~g~~~~ 86 (390)
T 1d2f_A 17 QWDYVAD-RFG-T-ADLLPFTISDMDFATAPCIIEALNQRL-MH----GVFGYSRW--KNDEFLAAIAHWFSTQHYTAID 86 (390)
T ss_dssp ----------------CEECCSSSCSSCCCHHHHHHHHHHH-TT----CCCCCCCS--CCHHHHHHHHHHHHHHSCCCCC
T ss_pred chhhhcc-ccC-C-CCeeEeeecCCCCCCCHHHHHHHHHHH-hC----CCCCCCCC--ChHHHHHHHHHHHHHhcCCCCC
Confidence 3444333 454 2 578888877653 35677777765543 21 11122211 223 33334444444456 66
Q ss_pred CCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCcc-Ccccccccccccccc
Q 010538 101 MKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAV-DNDGLSESLVTSTKI 179 (508)
Q Consensus 101 ~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~-~~~~l~~~~~~~~~~ 179 (508)
++ +|++|+|+++|+++++.++ .++|++|++....|+++. ..++..|.+++.+|.+..+ ..
T Consensus 87 ~~--~v~~t~g~~~al~~~~~~l-~~~gd~vl~~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~------------- 147 (390)
T 1d2f_A 87 SQ--TVVYGPSVIYMVSELIRQW-SETGEGVVIHTPAYDAFY---KAIEGNQRTVMPVALEKQADGW------------- 147 (390)
T ss_dssp GG--GEEEESCHHHHHHHHHHHS-SCTTCEEEEEESCCHHHH---HHHHHTTCEEEEEECEECSSSE-------------
T ss_pred HH--HEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCCcHHHH---HHHHHCCCEEEEeecccCCCcc-------------
Confidence 66 8999999999999999998 578899998876666554 4455679999999986432 11
Q ss_pred ccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC---HHHHHHHHcCCccccccCCCCCCCeEEEEeccccCC-
Q 010538 180 SLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN---LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCV- 255 (508)
Q Consensus 180 ~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~---i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g- 255 (508)
..|+++++ ++++ .+++++|++++++||||.++| +++|.++|++ +|+++|+|++|+..
T Consensus 148 ~~d~~~l~--~~l~-----~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~------------~~~~li~De~~~~~~ 208 (390)
T 1d2f_A 148 FCDMGKLE--AVLA-----KPECKIMLLCSPQNPTGKVWTCDELEIMADLCER------------HGVRVISDEIHMDMV 208 (390)
T ss_dssp ECCHHHHH--HHHT-----STTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHH------------TTCEEEEECTTTTCB
T ss_pred ccCHHHHH--HHhc-----cCCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHH------------cCCEEEEEccccccc
Confidence 11678887 5552 236899999999999999999 4555666665 99999999999863
Q ss_pred ---CCCCCCCCCCC---cEEEEeccccccCCCc--ceEEEEe-chhHhhhccccccCceEEecccchhhhhhccCccccc
Q 010538 256 ---TQPPDLSKYPV---DFVVMSFYKIFGYPTG--LGALIMR-NDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELF 326 (508)
Q Consensus 256 ---~~~~d~~~~~~---D~~~~S~~K~~g~P~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 326 (508)
..+.++..++. |. +.|+||++| ++| +|+++++ +++.+.+.+...+ ..
T Consensus 209 ~~g~~~~~~~~~~~~~~d~-~~s~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~~~~----------------------~~ 264 (390)
T 1d2f_A 209 WGEQPHIPWSNVARGDWAL-LTSGSKSFN-IPALTGAYGIIENSSSRDAYLSALKG----------------------RD 264 (390)
T ss_dssp CSSSCCCCGGGTCCSSEEE-EECSHHHHT-CGGGCCEEEEECSHHHHHHHHHHHHT----------------------TS
T ss_pred cCCCCCcCHHHcchhhHhh-ccCccHhhc-ccChhheEEEECCHHHHHHHHHHHhh----------------------hc
Confidence 33344433322 67 999999998 557 6999996 5666555433110 11
Q ss_pred cCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhc-ccCCCCCceEEEecCCCCCcccCCCCceEEEEee
Q 010538 327 EDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLS-LRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLK 405 (508)
Q Consensus 327 ~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 405 (508)
..++++...++++.++++...+ .++++++++.++++++.+.|++ + ++++++.+.. +.++++.++
T Consensus 265 ~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~------~~~~~~~~~~--------~~~~~~~~~ 329 (390)
T 1d2f_A 265 GLSSPSVLALTAHIAAYQQGAP-WLDALRIYLKDNLTYIADKMNAAF------PELNWQIPQS--------TYLAWLDLR 329 (390)
T ss_dssp CCCSCCHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHHHC------SSCCCCCCSB--------CSEEEEECG
T ss_pred ccCCCCHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHHHHhhC------CCCEEecCCc--------cEEEEEEcc
Confidence 2245677777777677764222 3678889999999999999987 5 3566554432 456678886
Q ss_pred CCCCCccCHHHHHHHHh-hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCC
Q 010538 406 RPDGSWFGYREVEKLAS-LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMST 484 (508)
Q Consensus 406 ~~~~~~~~~~~l~~~L~-~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t 484 (508)
+.. ++..++.+.|. ++||.+++|..|... .++++|||++. +
T Consensus 330 ~~~---~~~~~l~~~l~~~~gi~v~~g~~f~~~---------------------------------~~~~~Ris~~~--~ 371 (390)
T 1d2f_A 330 PLN---IDDNALQKALIEQEKVAIMPGYTYGEE---------------------------------GRGFVRLNAGC--P 371 (390)
T ss_dssp GGC---CCHHHHHHHHHHTTCEECEEGGGGCGG---------------------------------GTTEEEEECCS--C
T ss_pred ccC---CCHHHHHHHHHHHcCEEeeCccccCCC---------------------------------CCCeEEEEecC--C
Confidence 421 23345777787 689999998766421 25789999997 5
Q ss_pred HHHHHHHHHhhhhhhhh
Q 010538 485 FEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 485 ~eev~~l~~~~~~~~~~ 501 (508)
.++++.+++.+++.++.
T Consensus 372 ~~~l~~~l~~l~~~l~~ 388 (390)
T 1d2f_A 372 RSKLEKGVAGLINAIRA 388 (390)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88999999998887653
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=254.17 Aligned_cols=362 Identities=11% Similarity=-0.033 Sum_probs=250.6
Q ss_pred CCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCC--------ceEEEcCC
Q 010538 40 GTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKD--------YKCIFTSG 111 (508)
Q Consensus 40 ~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~--------~~i~~t~g 111 (508)
..-|+++-.++..++..+.+++...+. +....+..+.....+.+++.+++++++|.+.+. -..+||+|
T Consensus 78 ~p~~~~~~~~~~~~~~~~~~~~~~~~n----~~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~g 153 (481)
T 4e1o_A 78 SPHMHAYYPALTSWPSLLGDMLADAIN----CLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQST 153 (481)
T ss_dssp STTBCSSSCCCCCHHHHHHHHHHHHHC----CCCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESC
T ss_pred CCCeeEeCCCCCCHHHHHHHHHHHHhC----cccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCc
Confidence 455777776655566666555544432 222334455667788888999999999997531 05799999
Q ss_pred hHHHHHHHHhhcCC------------------CCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCcccccccc
Q 010538 112 ATAALKLVGEAFPW------------------SHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESL 173 (508)
Q Consensus 112 ~t~al~~~~~~l~~------------------~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~ 173 (508)
+|+|+.+++.+... .++.+|+++...|+++.....+ .|.+++.||.++++.+
T Consensus 154 gt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~---~g~~~~~v~~~~~~~~------- 223 (481)
T 4e1o_A 154 VSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLI---SLVKMKFLPVDDNFSL------- 223 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHH---HTCEEEEECCCTTSCC-------
T ss_pred hHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHh---CCCceEEEEcCCCCcC-------
Confidence 99999877765421 1467899999999998777654 4899999999877766
Q ss_pred ccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEecccc
Q 010538 174 VTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKG 253 (508)
Q Consensus 174 ~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~ 253 (508)
|+++++ ++|++.......+.+|++++++|++|.+.|+++|.++|++ +|++++||++++
T Consensus 224 --------d~~~Le--~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~------------~~~~lhvDaA~g 281 (481)
T 4e1o_A 224 --------RGEALQ--KAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAR------------EGLWLHIDAAYA 281 (481)
T ss_dssp --------CHHHHH--HHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH------------HTCEEEEECTTG
T ss_pred --------CHHHHH--HHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHH------------cCCeEEeehhhH
Confidence 688888 6664321112237889999999999999999999999998 999999999998
Q ss_pred CCCCCCC-CC--CC---CCcEEEEeccccccCCCcceEEEEechhH-hh-h--ccccccCceEEecccchhhhhhccCcc
Q 010538 254 CVTQPPD-LS--KY---PVDFVVMSFYKIFGYPTGLGALIMRNDAA-KL-L--KNTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 254 ~g~~~~d-~~--~~---~~D~~~~S~~K~~g~P~G~G~l~~~~~~~-~~-l--~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
.+....+ .. .. .+|++++++|||++.|.|+|+++++++.. .. + .+.+...... ....++ ..
T Consensus 282 ~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~---~~~~~~------~~ 352 (481)
T 4e1o_A 282 GTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANS---GVATDF------MH 352 (481)
T ss_dssp GGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGCCTTT---TTSCCG------GG
T ss_pred HHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhccCccc---CCCCCc------cc
Confidence 7643221 11 11 35999999999988899999999987653 11 1 1111111000 000000 01
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEE
Q 010538 324 ELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFN 403 (508)
Q Consensus 324 ~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 403 (508)
.....+.+ .....+++++..+...|++++.++..++++++.+.|+++ ++++++.++. .++++|+
T Consensus 353 ~~~~~~r~--~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~------~g~~~~~~~~--------~~~v~f~ 416 (481)
T 4e1o_A 353 WQIPLSRR--FRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRND------PSFEIPAKRH--------LGLVVFR 416 (481)
T ss_dssp GSSSSCCC--CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------TTEECCSCCC--------SSEEEEE
T ss_pred ccccCCCC--ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC------CCeEEecCCc--------eeEEEEE
Confidence 11222222 235667778887777789999999999999999999988 4799886653 7899999
Q ss_pred eeCCCCCccCHHHHHHHHhhCCCee-ccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC
Q 010538 404 LKRPDGSWFGYREVEKLASLSGIQL-RTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM 482 (508)
Q Consensus 404 ~~~~~~~~~~~~~l~~~L~~~gI~v-~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 482 (508)
+++.+. ...++.+.|.++|+.+ .++. . .....+|+++..+
T Consensus 417 ~~~~~~---~~~~l~~~L~~~g~~~~~~~~----~--------------------------------~g~~~lR~~~~~~ 457 (481)
T 4e1o_A 417 LKGPNS---LTENVLKEIAKAGRLFLIPAT----I--------------------------------QDKLIIRFTVTSQ 457 (481)
T ss_dssp ESSCHH---HHHHHHHHHHHHCSSBCEEEE----E--------------------------------TTEEEEEEECCCT
T ss_pred eCCchH---HHHHHHHHHHhCCeEEEEeeE----E--------------------------------CCEEEEEEEeCCC
Confidence 865321 1245777887777543 3211 0 0146899998755
Q ss_pred -CCHHHHHHHHHhhhhhhhh
Q 010538 483 -STFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 483 -~t~eev~~l~~~~~~~~~~ 501 (508)
+|.+||++++++|+++.+.
T Consensus 458 ~tt~~di~~~~~~i~~~~~~ 477 (481)
T 4e1o_A 458 FTTRDDILRDWNLIRDAATL 477 (481)
T ss_dssp TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 5899999999999988764
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-27 Score=246.73 Aligned_cols=341 Identities=10% Similarity=0.025 Sum_probs=239.1
Q ss_pred CCCeeeeCCCC-CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC--CCCCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGA-TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN--ASMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~--~~~~~~~i~~t~g~t~a 115 (508)
++++.|..+.. .+++|.+++++.+......+ .|... ..++.+++.+++++.++ ++++ +|+||+|+++|
T Consensus 61 ~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~-----~y~~~--~~~l~~~l~~~l~~~~g~~~~~~--~v~~~~g~~ea 131 (421)
T 3l8a_A 61 PELLQMWVADMDFLPVPEIKEAIINYGREHIF-----GYNYF--NDDLYQAVIDWERKEHDYAVVKE--DILFIDGVVPA 131 (421)
T ss_dssp TTCEECCSSCCCSCCCHHHHHHHHHHHHHCCS-----SCBCC--CHHHHHHHHHHHHHHHCCCCCGG--GEEEESCHHHH
T ss_pred CCeeecccCCCCCCCCHHHHHHHHHHHhcCCc-----CCCCC--CHHHHHHHHHHHHHHhCCCCCHH--HEEEcCCHHHH
Confidence 45666654442 23467787777654432111 11111 25667888899999988 5666 89999999999
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccC-CccCccccccccccccccccchhhhhcCCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVE-EAVDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~-~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
+++++.++ .++|++|++....|+++.. .++..|.+++.+|++ .++.. ..|+++++ +++.
T Consensus 132 ~~~a~~~~-~~~gd~Vi~~~~~y~~~~~---~~~~~g~~~~~~~~~~~~~~~-------------~~d~~~le--~~i~- 191 (421)
T 3l8a_A 132 ISIALQAF-SEKGDAVLINSPVYYPFAR---TIRLNDHRLVENSLQIINGRF-------------EIDFEQLE--KDII- 191 (421)
T ss_dssp HHHHHHHH-SCTEEEEEEEESCCHHHHH---HHHHTTEEEEEEECEEETTEE-------------ECCHHHHH--HHHH-
T ss_pred HHHHHHHh-cCCCCEEEECCCCcHHHHH---HHHHCCCEEEeccccccCCCe-------------eeCHHHHH--HHhh-
Confidence 99999998 6788999988876665544 445569999999986 23211 11678888 4442
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCCCCCCC-----CC
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQPPDLSK-----YP 265 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d~~~-----~~ 265 (508)
.+++++|++++++||||.++|.+++.++++ +|+++|+++|+|++|+. |....++.. .+
T Consensus 192 ----~~~~~~vil~~p~nptG~~~~~~~l~~l~~---------l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~ 258 (421)
T 3l8a_A 192 ----DNNVKIYLLCSPHNPGGRVWDNDDLIKIAE---------LCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKD 258 (421)
T ss_dssp ----HTTEEEEEEESSBTTTTBCCCHHHHHHHHH---------HHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGG
T ss_pred ----ccCCeEEEECCCCCCCCCcCCHHHHHHHHH---------HHHHcCCEEEEEccccccccCCCCCccHHHcCchhcC
Confidence 157899999999999999976655555544 34459999999999975 322333322 24
Q ss_pred CcEEEEeccccccCCCc--ceEEEEe-chhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHH
Q 010538 266 VDFVVMSFYKIFGYPTG--LGALIMR-NDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHG 342 (508)
Q Consensus 266 ~D~~~~S~~K~~g~P~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~a 342 (508)
.++++.|++|++| ++| +|+++++ +++.+.+.+.. .....+++|..+++++.++
T Consensus 259 ~~i~~~s~sK~~g-~~G~~~G~~~~~~~~l~~~~~~~~-----------------------~~~~~~~~n~~~~~a~~aa 314 (421)
T 3l8a_A 259 FTIILSSATKTFN-IAGTKNSFAIIQNESLRRKFQYRQ-----------------------LANNQHEVPTVGMIATQAA 314 (421)
T ss_dssp TEEEEECSHHHHT-CGGGCCEEEECCSHHHHHHHHHHH-----------------------HHTTCSCCCHHHHHHHHHH
T ss_pred cEEEEEeChhhcc-CchhheEeEEcCCHHHHHHHHHHH-----------------------HhcccCCCCHHHHHHHHHH
Confidence 5589999999998 546 6999998 67766554431 1122346777778888778
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeC--CCCCccCHHHHHHH
Q 010538 343 FNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKR--PDGSWFGYREVEKL 420 (508)
Q Consensus 343 l~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~l~~~ 420 (508)
++...+ .++++.+++.++++++.+.|+++ ++++++.+.. ..++++.++. .+.. ++.+.
T Consensus 315 l~~~~~-~~~~~~~~~~~~~~~l~~~L~~~------~~i~~~~~~~--------~~~~~v~~~~~~~~~~-----~l~~~ 374 (421)
T 3l8a_A 315 FQYGKP-WLEELKTVIEGNIKLVIKELEAK------TKIKVMEPEG--------TYLVWLDFSAYAIAQP-----QLSEK 374 (421)
T ss_dssp HHHCHH-HHHHHHHHHHHHHHHHHHHHHHH------CSCEEECCSB--------SSEEEEECGGGTCCTT-----HHHHH
T ss_pred HhccHH-HHHHHHHHHHHHHHHHHHHHHhC------CCceEeCCCe--------eEEEEEeccccCCCHH-----HHHHH
Confidence 775332 36888999999999999999886 3688876643 4566688764 2332 46777
Q ss_pred Hh-hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 421 AS-LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 421 L~-~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
|. ++||.+++|..|... .++++||+++ ++.++++++++.|++.+
T Consensus 375 l~~~~gi~v~~g~~f~~~---------------------------------~~~~iRi~~~--~~~~~i~~~l~~l~~~l 419 (421)
T 3l8a_A 375 LQNEAKVVLNDGAHFGKE---------------------------------GKYFARLNVA--TPKNTVQEALSRIISVF 419 (421)
T ss_dssp HHHTTCEECEEGGGGCGG---------------------------------GTTEEEEECC--SCHHHHHHHHHHHHHHC
T ss_pred HHHhCCEEEECchhhCCC---------------------------------CCCEEEEEec--CCHHHHHHHHHHHHHHH
Confidence 74 679999998766432 2689999999 69999999999998765
Q ss_pred h
Q 010538 500 N 500 (508)
Q Consensus 500 ~ 500 (508)
+
T Consensus 420 ~ 420 (421)
T 3l8a_A 420 G 420 (421)
T ss_dssp -
T ss_pred h
Confidence 3
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-27 Score=246.15 Aligned_cols=335 Identities=11% Similarity=0.041 Sum_probs=231.5
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhcc-ccCCCCCccchhhhhhHHHHHHHHHHHHHc----CCC--C-CCceEEEc
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTN-VYGNPHSQSDISLATCDIVRAAREQVLDYF----NAS--M-KDYKCIFT 109 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~--~-~~~~i~~t 109 (508)
++.+.|+.+.... +++.+.+++.+.+... ... |... ....++++.+++++ |++ + + +|++|
T Consensus 47 ~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~-----y~~~----~g~~~lr~~ia~~~~~~~g~~~~~~~--~v~~t 115 (404)
T 2o1b_A 47 LPLINMAVGIPDGPTPQGIIDHFQKALTIPENQK-----YGAF----HGKEAFKQAIVDFYQRQYNVTLDKED--EVCIL 115 (404)
T ss_dssp SCCEECCCCSCSSCCCHHHHHHHHHHTTCHHHHS-----CCCT----TCCHHHHHHHHHHHHHHHCCCCCTTT--SEEEE
T ss_pred CCEEecCCcCCCCCCCHHHHHHHHHHHhCCCCCC-----CCCC----CCCHHHHHHHHHHHHHHhCCCCCCcc--cEEEc
Confidence 3578888776543 4677777665433111 111 1110 11345566666666 875 3 5 79999
Q ss_pred CChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCcc-Cccccccccccccccccchhhhhc
Q 010538 110 SGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAV-DNDGLSESLVTSTKISLLPIQRRK 188 (508)
Q Consensus 110 ~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~-~~~~l~~~~~~~~~~~~d~~~l~~ 188 (508)
+|+++|+.+++.++ .++|++|++....|+++... ++..|.+++.+|.+.++ .+ |+++++
T Consensus 116 ~G~~~al~~~~~~l-~~~gd~Vl~~~p~y~~~~~~---~~~~g~~~~~v~~~~~~~~~---------------d~~~l~- 175 (404)
T 2o1b_A 116 YGTKNGLVAVPTCV-INPGDYVLLPDPGYTDYLAG---VLLADGKPVPLNLEPPHYLP---------------DWSKVD- 175 (404)
T ss_dssp SSHHHHHHHHHHHH-CCTTCEEEEEESCCSSHHHH---HHHTTCEEEEEECCTTTCCC---------------CGGGSC-
T ss_pred CCcHHHHHHHHHHh-cCCCCEEEEcCCCchhHHHH---HHHCCCEEEEeccCcccCcC---------------CHHHHH-
Confidence 99999999999998 67889999998888776654 44569999999987522 12 456666
Q ss_pred CCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC---CCCCCCCC-
Q 010538 189 GASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT---QPPDLSKY- 264 (508)
Q Consensus 189 ~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~---~~~d~~~~- 264 (508)
+++ .+++++|++++++||||.++|.+.+.++++ +|+++|+++|+|++|+... .+.++...
T Consensus 176 -~~l------~~~~~~v~l~~p~nptG~~~~~~~l~~l~~---------~~~~~~~~li~De~~~~~~~~g~~~~~~~~~ 239 (404)
T 2o1b_A 176 -SQI------IDKTKLIYLTYPNNPTGSTATKEVFDEAIA---------KFKGTDTKIVHDFAYGAFGFDAKNPSILASE 239 (404)
T ss_dssp -HHH------HHHEEEEEECSSCTTTCCCCCHHHHHHHHH---------HHTTSSCEEEEECTTTTCBSSSCCCCGGGST
T ss_pred -Hhh------ccCceEEEEcCCCCCCCccCCHHHHHHHHH---------HHHHcCCEEEEEccchhcccCCCCCChhhcC
Confidence 333 356899999999999999998665555544 3445999999999998643 23344332
Q ss_pred ---CCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHH
Q 010538 265 ---PVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASI 339 (508)
Q Consensus 265 ---~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l 339 (508)
+.++++.|+||++| ++| +|++++++++++.+.+... ...++.+....+++
T Consensus 240 ~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~~~~~~~l~~~~~------------------------~~~~~~~~~~~~a~ 294 (404)
T 2o1b_A 240 NGKDVAIEIYSLSKGYN-MSGFRVGFAVGNKDMIQALKKYQT------------------------HTNAGMFGALQDAA 294 (404)
T ss_dssp THHHHEEEEEESTTTTT-CGGGCCEEEEECHHHHHHHHHHHH------------------------HHCCCCCHHHHHHH
T ss_pred CCCCCEEEEEecchhcc-CchhheEeEecCHHHHHHHHHHHh------------------------hccCCCCHHHHHHH
Confidence 46799999999998 446 7999999888776654311 11234556666666
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHH
Q 010538 340 RHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEK 419 (508)
Q Consensus 340 ~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~ 419 (508)
.++++.. +..++++++++.++++++.+.|+++ ++++..+.. +.+++++++.. ++..++.+
T Consensus 295 ~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~--------g~~~~~~~~~~----~~~~~l~~ 354 (404)
T 2o1b_A 295 IYALNHY-DDFLEEQSNVFKTRRDRFEAMLAKA-------DLPFVHAKG--------GIYVWLETPPG----YDSEQFEQ 354 (404)
T ss_dssp HHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHT-------TCCEECCCB--------SSEEEEECCTT----CCHHHHHH
T ss_pred HHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHhc-------CCeecCCCc--------ceEEEEeCCCC----CCHHHHHH
Confidence 6666642 2346788889999999999999886 466654432 55688888632 23445666
Q ss_pred HHh-hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 420 LAS-LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 420 ~L~-~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
.|. ++||.+++|..|... ..+++|||++. +.++++.+++.|+++
T Consensus 355 ~l~~~~gi~v~~g~~f~~~---------------------------------~~~~iRis~~~--~~e~l~~~l~~l~~~ 399 (404)
T 2o1b_A 355 FLVQEKSILVAPGKPFGEN---------------------------------GNRYVRISLAL--DDQKLDEAAIRLTEL 399 (404)
T ss_dssp HHHHHHCEECEESGGGCGG---------------------------------GTTEEEEECCS--CTTHHHHHHHHHHGG
T ss_pred HHHHHCCEEEeCchhhCcC---------------------------------CCCeEEEEEcC--CHHHHHHHHHHHHHH
Confidence 654 689999998765431 15789999996 788999999998887
Q ss_pred hh
Q 010538 499 VN 500 (508)
Q Consensus 499 ~~ 500 (508)
++
T Consensus 400 l~ 401 (404)
T 2o1b_A 400 AY 401 (404)
T ss_dssp GG
T ss_pred HH
Confidence 64
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-27 Score=241.53 Aligned_cols=332 Identities=11% Similarity=0.043 Sum_probs=232.9
Q ss_pred CCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC------CCCCCceEEEcCC
Q 010538 39 NGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN------ASMKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------~~~~~~~i~~t~g 111 (508)
++++.|..+... ++++.+.+++.+.+..... .|.. .. .++++.++++++ ++++ +|++|+|
T Consensus 23 ~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~-----~y~~-~~-----~~lr~~la~~~~~~~~~~~~~~--~i~~t~g 89 (377)
T 3fdb_A 23 QGVLPLWVAESDFSTCPAVLQAITDAVQREAF-----GYQP-DG-----SLLSQATAEFYADRYGYQARPE--WIFPIPD 89 (377)
T ss_dssp TTSEECCSSCCCSCCCHHHHHHHHHHHHTTCC-----SSCC-SS-----CCHHHHHHHHHHHHHCCCCCGG--GEEEESC
T ss_pred CCeeeecccCCCCCCCHHHHHHHHHHHHcCCC-----CCCC-CC-----HHHHHHHHHHHHHHhCCCCCHH--HEEEeCC
Confidence 678888877643 3467777776554432111 1111 11 334566666655 6677 8999999
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCC
Q 010538 112 ATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGAS 191 (508)
Q Consensus 112 ~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~ 191 (508)
+|+|+++++.++ .++|++|++....|+++... ++..|.+++.+|.+.+ + |+++++ ++
T Consensus 90 ~~~a~~~~~~~~-~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~~~~~~~--~---------------d~~~l~--~~ 146 (377)
T 3fdb_A 90 VVRGLYIAIDHF-TPAQSKVIVPTPAYPPFFHL---LSATQREGIFIDATGG--I---------------NLHDVE--KG 146 (377)
T ss_dssp HHHHHHHHHHHH-SCTTCCEEEEESCCTHHHHH---HHHHTCCEEEEECTTS--C---------------CHHHHH--HH
T ss_pred hHHHHHHHHHHh-cCCCCEEEEcCCCcHhHHHH---HHHcCCEEEEccCCCC--C---------------CHHHHH--HH
Confidence 999999999998 67889999888777766544 4456999999998765 4 678887 55
Q ss_pred CCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----C-CCCCCCCC---
Q 010538 192 FPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----V-TQPPDLSK--- 263 (508)
Q Consensus 192 l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g-~~~~d~~~--- 263 (508)
+ .++++++++++++||||.++|.+++.++++ +|+++|+++|+|++|+. | ..+.++..
T Consensus 147 l------~~~~~~v~i~~p~nptG~~~~~~~l~~l~~---------~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~ 211 (377)
T 3fdb_A 147 F------QAGARSILLCNPYNPLGMVFAPEWLNELCD---------LAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTA 211 (377)
T ss_dssp H------HTTCCEEEEESSBTTTTBCCCHHHHHHHHH---------HHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHH
T ss_pred h------ccCCCEEEEeCCCCCCCCCCCHHHHHHHHH---------HHHHcCCEEEEEcccchhhcCCCCCcccHHHccC
Confidence 4 345789999999999999999877777755 44459999999999986 2 23334432
Q ss_pred CCCcEEEEeccccccCCCc--ceEEEE-echhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHH
Q 010538 264 YPVDFVVMSFYKIFGYPTG--LGALIM-RNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIR 340 (508)
Q Consensus 264 ~~~D~~~~S~~K~~g~P~G--~G~l~~-~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~ 340 (508)
.+.++++.|+||++| ++| +|++++ ++++++.+.... ....++++....+++.
T Consensus 212 ~~~~i~~~s~sK~~g-~~G~r~G~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~a~~ 266 (377)
T 3fdb_A 212 ASVCITITAPSKAWN-IAGLKCAQIIFSNPSDAEHWQQLS------------------------PVIKDGASTLGLIAAE 266 (377)
T ss_dssp HHHEEEEECSTTTTT-CGGGCCEEEECCSHHHHHHHHHSC------------------------HHHHCCCCHHHHHHHH
T ss_pred CCcEEEEEeChHhcc-CcchhheEEEeCCHHHHHHHHHHH------------------------HhhcCCCCHHHHHHHH
Confidence 234589999999997 446 798887 566665554321 1112456666666666
Q ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHhc-ccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCC-CCCccCHHHHH
Q 010538 341 HGFNLINSLTVPAICRHIASLGMYVRKVLLS-LRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRP-DGSWFGYREVE 418 (508)
Q Consensus 341 ~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~l~ 418 (508)
++++... ..++++.+++.++++++.+.|++ + ++++++.+.. +.++++.++.. ...+ .+.
T Consensus 267 ~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~------~~~~~~~~~~--------~~~~~~~~~~~~~~~~----~~~ 327 (377)
T 3fdb_A 267 AAYRYGT-DFLNQEVAYLKNNHDFLLHEIPKRI------PGAKITPMQA--------TYLMWIDFRDTTIEGS----PSE 327 (377)
T ss_dssp HHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHS------TTCEECCCSB--------CSEEEEECTTSCCCSC----HHH
T ss_pred HHHhccH-HHHHHHHHHHHHHHHHHHHHHHhhC------CCceEecCCe--------eEEEEEECcccCCCHH----HHH
Confidence 6666432 23688899999999999999988 5 4688876543 56667888653 1222 134
Q ss_pred HHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 419 KLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 419 ~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
.+++++||.+++|..|... .++++|+|++. +.++++++++.|+++
T Consensus 328 ~l~~~~gi~v~~g~~~~~~---------------------------------~~~~~Ris~~~--~~e~i~~~l~~l~~~ 372 (377)
T 3fdb_A 328 FFIEKAKVAMNDGAWFGED---------------------------------GTGFCRLNFAT--SREVLEEAIDRMAKA 372 (377)
T ss_dssp HHHHHHCEECEEGGGGCGG---------------------------------GTTEEEEECCS--CHHHHHHHHHHHHHH
T ss_pred HHHHhCCEEecCChhccCC---------------------------------CCCEEEEEeCC--CHHHHHHHHHHHHHH
Confidence 4455569999998776543 16899999994 899999999999887
Q ss_pred hh
Q 010538 499 VN 500 (508)
Q Consensus 499 ~~ 500 (508)
++
T Consensus 373 l~ 374 (377)
T 3fdb_A 373 VS 374 (377)
T ss_dssp HT
T ss_pred Hh
Confidence 65
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-27 Score=248.59 Aligned_cols=335 Identities=14% Similarity=0.073 Sum_probs=228.1
Q ss_pred CCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCC--CccchhhhhhHHHHHHHHHHHHHc----CCCCCCceEEEcCC
Q 010538 39 NGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPH--SQSDISLATCDIVRAAREQVLDYF----NASMKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~r~~la~~~----~~~~~~~~i~~t~g 111 (508)
++.|+|..+... ++++.+++++.+... . +.+.. ..|.. .....++++.+++++ +++++ +|++|+|
T Consensus 56 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~-~-~~~~~~~~~y~~----~~g~~~l~~~ia~~~~~~~~~~~~--~i~~t~G 127 (432)
T 3ei9_A 56 AQVISLGIGDTTEPIPEVITSAMAKKAH-E-LSTIEGYSGYGA----EQGAKPLRAAIAKTFYGGLGIGDD--DVFVSDG 127 (432)
T ss_dssp CCCEECSSCCCCSCCCHHHHHHHHHHHH-H-TTSTTTCCCCCC----TTCCHHHHHHHHHHHHTTTTCCGG--GEEEESC
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHh-c-ccccCCccCCCC----CCCCHHHHHHHHHHHHccCCCCcc--eEEECCC
Confidence 478999988655 457778777765442 2 22211 12221 112355667777765 78887 8999999
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcC---------CeEEEEccCCccCccccccccccccccccc
Q 010538 112 ATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQG---------AAAFAIDVEEAVDNDGLSESLVTSTKISLL 182 (508)
Q Consensus 112 ~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G---------~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d 182 (508)
+++++.++ .++ .++|+.|+++...|+++....+.+...| .+++.+|.+....+.
T Consensus 128 ~~~al~~l-~~l-~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 190 (432)
T 3ei9_A 128 AKCDISRL-QVM-FGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFF--------------- 190 (432)
T ss_dssp HHHHHHHH-HHH-HCTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTS---------------
T ss_pred hHHHHHHH-HHH-cCCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCc---------------
Confidence 99999985 555 4789999999999998887776664333 367788876533321
Q ss_pred hhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC---CCCCC
Q 010538 183 PIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC---VTQPP 259 (508)
Q Consensus 183 ~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~---g~~~~ 259 (508)
.+++ . .+++++|++++++||||.++|.+++.++++ +|+++|+++|+|++|+. +..+.
T Consensus 191 -~~l~--------~--~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~---------la~~~~~~li~Dea~~~~~~~~~~~ 250 (432)
T 3ei9_A 191 -PDLS--------T--VGRTDIIFFCSPNNPTGAAATREQLTQLVE---------FAKKNGSIIVYDSAYAMYMSDDNPR 250 (432)
T ss_dssp -CCGG--------G--CCCCSEEEEESSCTTTCCCCCHHHHHHHHH---------HHHHHTCEEEEECTTGGGCCSSCCS
T ss_pred -CChh--------h--CCCCCEEEEeCCCCCCCCCCCHHHHHHHHH---------HHHHcCcEEEEccchHhhccCCCCC
Confidence 1123 1 256799999999999999999887777755 45559999999999984 32233
Q ss_pred CCCC----CCCcEEEEeccccccCCCc--ceEEEEechh--------HhhhccccccCceEEecccchhhhhhccCcccc
Q 010538 260 DLSK----YPVDFVVMSFYKIFGYPTG--LGALIMRNDA--------AKLLKNTYFSGGTVAASIADIDFVKRRQGVEEL 325 (508)
Q Consensus 260 d~~~----~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~--------~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 325 (508)
.+.. .+.++++.|++|+|| ++| +|+++++++. .+.+... ..
T Consensus 251 ~~~~~~~~~~~~i~~~S~SK~~g-~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~------------------------~~ 305 (432)
T 3ei9_A 251 SIFEIPGAEEVAMETASFSNYAG-FTGVRLGWTVIPKKLLYSDGFPVAKDFNRI------------------------IC 305 (432)
T ss_dssp SGGGSTTGGGTEEEEEESHHHHC-TTTTCCEEEECCTTCBCTTSCBHHHHHHHH------------------------HH
T ss_pred ChhhcCCCCCeEEEEecchhccC-CcccceEEEEEChHHhhcchHHHHHHHHHH------------------------hc
Confidence 3322 245799999999998 667 7999998876 2222211 11
Q ss_pred ccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEee
Q 010538 326 FEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLK 405 (508)
Q Consensus 326 ~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 405 (508)
...++++...+.+..+++.......++++.+++.++++++.+.|+++ ++++..+.. ++++++.++
T Consensus 306 ~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~--------~~~~~~~~~ 370 (432)
T 3ei9_A 306 TCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL-------GYDVYGGKN--------APYVWVHFP 370 (432)
T ss_dssp HSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TCCEEECSS--------SSEEEEECT
T ss_pred cccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHC-------CceecCCCc--------ceEEEEECC
Confidence 11234555555555555532111236788899999999999999886 566665543 688999987
Q ss_pred CCCCCccCHHHHHHH-HhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCC
Q 010538 406 RPDGSWFGYREVEKL-ASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMST 484 (508)
Q Consensus 406 ~~~~~~~~~~~l~~~-L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t 484 (508)
+. +..++.+. ++++||.+++|..|.+. ..+++|||+ .++
T Consensus 371 ~~-----~~~~~~~~ll~~~gv~v~~g~~f~~~---------------------------------~~~~iRis~--~~~ 410 (432)
T 3ei9_A 371 NQ-----SSWDVFAEILEKTHVVTTPGSGFGPG---------------------------------GEGFVRVSA--FGH 410 (432)
T ss_dssp TS-----CHHHHHHHHHHHHCEECEEGGGGCGG---------------------------------GTTEEEEEC--CSC
T ss_pred CC-----CHHHHHHHHHHHCCEEEeCchHhCCC---------------------------------CCCEEEEEe--cCC
Confidence 43 23345555 45679999998766532 268999997 469
Q ss_pred HHHHHHHHHhhhhh
Q 010538 485 FEDAKVNRCSSFDF 498 (508)
Q Consensus 485 ~eev~~l~~~~~~~ 498 (508)
.++++++++.|++-
T Consensus 411 ~e~l~~~l~rl~~~ 424 (432)
T 3ei9_A 411 RENILEACRRFKQL 424 (432)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988753
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=239.01 Aligned_cols=312 Identities=13% Similarity=0.027 Sum_probs=210.2
Q ss_pred HHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHH-HHhcCCeEEEEccCCccCc
Q 010538 88 AAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREY-ALSQGAAAFAIDVEEAVDN 166 (508)
Q Consensus 88 ~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~-~~~~G~~v~~v~~~~~~~~ 166 (508)
++++.+|+++|++ + .+++++| ++|+++++.++ .++|++|+++...|+++...... ++..|++++.+|..
T Consensus 2 ~l~~~la~~~g~~-~--~i~~~sG-~~a~~~~~~~~-~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----- 71 (331)
T 1pff_A 2 ALEGKIAKLEHAE-A--CAATASG-MGAIAASVWTF-LKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMA----- 71 (331)
T ss_dssp HHHHHHHHHHTCS-E--EEEESSH-HHHHHHHHHHH-CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-----
T ss_pred hHHHHHHHHhCCC-e--EEEeCCh-HHHHHHHHHHh-cCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCCC-----
Confidence 5688999999987 4 5666666 89999999988 67889999999999987665443 56679999998762
Q ss_pred cccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEE
Q 010538 167 DGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMV 246 (508)
Q Consensus 167 ~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~v 246 (508)
|+++++ +++ ++++++|++++++||||.+.|+++|.++|++ .+|+++
T Consensus 72 ---------------d~~~l~--~~i------~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~-----------~~~~~l 117 (331)
T 1pff_A 72 ---------------VPGNIE--KHL------KPNTRIVYFETPANPTLKVIDIEDAVKQARK-----------QKDILV 117 (331)
T ss_dssp ---------------STTHHH--HTC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHTT-----------SSSCEE
T ss_pred ---------------CHHHHH--Hhh------cCCCeEEEEECCCCCcCcccCHHHHHHHHhh-----------hcCCEE
Confidence 355667 444 4678999999999999999999999999984 069999
Q ss_pred EEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEec-hhHhhhccccccCceEEecccchhhhhhccCcc
Q 010538 247 LIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRN-DAAKLLKNTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 247 ivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
++|++|+.|....++ +.++|++++|+||++++|.+ .|++++++ ++++.+.+...++
T Consensus 118 i~D~a~~~~~~~~~~-~~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~-------------------- 176 (331)
T 1pff_A 118 IVDNTFASPILTNPL-DLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDI-------------------- 176 (331)
T ss_dssp EEECTTTHHHHCCGG-GGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCC--------------------
T ss_pred EEECCCcccccCChh-hcCCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhh--------------------
Confidence 999999887654444 46799999999999987876 79999998 8877776653320
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH--HhcccC--CCCCceEEEecCCCCCcccCCCCce
Q 010538 324 ELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKV--LLSLRH--ENGADVCTIYGTYTSEVSYHDTGSM 399 (508)
Q Consensus 324 ~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~--L~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (508)
..++.+....+++..+++.+... .+...+....+.+++.+. +.+... ....++++++.+.. ...+++
T Consensus 177 ---~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~-----~~~~~~ 247 (331)
T 1pff_A 177 ---TGAIISPHDAWLITRGTLTLDMR-VKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQM-----KMFGSM 247 (331)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHC-----SSCCSE
T ss_pred ---cCCCCCHHHHHHHHcCcchHHHH-HHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhC-----CCCceE
Confidence 11234444444444555543221 233333333444433322 000000 00112333333221 123789
Q ss_pred EEEEeeCCCCCccCHHHHHHHHhhCCCeeccC---------CCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCC
Q 010538 400 VSFNLKRPDGSWFGYREVEKLASLSGIQLRTG---------CFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGK 470 (508)
Q Consensus 400 v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g---------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 470 (508)
++|.+++ ..++.+.|.++||.++.. .+|+.+.. ...+++.+.++|.
T Consensus 248 ~~~~~~~-------~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~~----~~~~~~~~~~~g~-------------- 302 (331)
T 1pff_A 248 IAFDVDG-------LEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTH----AGVPKEEREAAGL-------------- 302 (331)
T ss_dssp EEEECSS-------HHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTS----TTSCHHHHHHTTC--------------
T ss_pred EEEEECC-------HHHHHHHHHhCCCceeccCCCCcceeeecchhhcc----cccCHHHHHhcCC--------------
Confidence 9998852 235888999999987654 24433211 0012333444443
Q ss_pred CCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 471 PTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 471 ~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
.++.+|+|++.++|++++++++++++++
T Consensus 303 ~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 303 TDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp CTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred CCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 2689999999999999999999998764
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-28 Score=251.59 Aligned_cols=363 Identities=15% Similarity=0.025 Sum_probs=245.8
Q ss_pred hHHHHHHhhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhcc-ccCCCCCccchhhhhhHHHH-HHHHHHHHHcCCCCCC
Q 010538 26 IDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTN-VYGNPHSQSDISLATCDIVR-AAREQVLDYFNASMKD 103 (508)
Q Consensus 26 ~~~~r~~~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~r~~la~~~~~~~~~ 103 (508)
++.+++ ++... ++++.|..+. ++.++.+.+++.+.+... ...+|...+..+.......+ .+++++++++|++++
T Consensus 12 ~~~~~~-~~~~~-~~~i~~~~~~-~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~~- 87 (407)
T 2dkj_A 12 FELIAL-EEKRQ-REGLELIASE-NFVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWA- 87 (407)
T ss_dssp HHHHHH-HHHHH-HTSEECCTTC-CCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE-
T ss_pred HHHHHH-HHHHh-hcceeeccCC-CCCCHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCcc-
Confidence 455555 65544 5666665554 445888888875543221 12233332222222222334 477899999999865
Q ss_pred ceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCC--eEEEEccCC-ccCccccccccccccccc
Q 010538 104 YKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGA--AAFAIDVEE-AVDNDGLSESLVTSTKIS 180 (508)
Q Consensus 104 ~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~--~v~~v~~~~-~~~~~~l~~~~~~~~~~~ 180 (508)
.|++++| |+|+.+++.++ .++|++|+++...|+++......++..|. .+..++.+. ...+
T Consensus 88 -~i~~~sG-t~a~~~~~~~~-~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-------------- 150 (407)
T 2dkj_A 88 -NVQPHSG-SQANMAVYMAL-MEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELI-------------- 150 (407)
T ss_dssp -ECCCSSH-HHHHHHHHHHH-CCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSC--------------
T ss_pred -eEEecch-HHHHHHHHHHh-cCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcccCcc--------------
Confidence 4555555 56999999998 68899999999999887421111122244 344443332 2333
Q ss_pred cchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCC
Q 010538 181 LLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPD 260 (508)
Q Consensus 181 ~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d 260 (508)
|+++++ +++. .+++++|++++++|+ ...|+++|.++|++ +|+++|+|++|+.|..+.+
T Consensus 151 -d~~~l~--~~l~-----~~~~~~v~~~~p~~~--~~~~l~~i~~l~~~------------~~~~li~Dea~~~g~~~~~ 208 (407)
T 2dkj_A 151 -DLEEVR--RLAL-----EHRPKVIVAGASAYP--RFWDFKAFREIADE------------VGAYLVVDMAHFAGLVAAG 208 (407)
T ss_dssp -CHHHHH--HHHH-----HHCCSEEEECCSSCC--SCCCHHHHHHHHHH------------HTCEEEEECTTTHHHHHTT
T ss_pred -CHHHHH--HHHh-----hcCCeEEEEeccccC--CCCCHHHHHHHHHH------------cCCEEEEEccccccccccC
Confidence 577887 4442 136789998777775 88999999999998 8999999999986443222
Q ss_pred CCC---CCCcEEEEeccccccCCCcceEEEEe-chhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHH
Q 010538 261 LSK---YPVDFVVMSFYKIFGYPTGLGALIMR-NDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSI 336 (508)
Q Consensus 261 ~~~---~~~D~~~~S~~K~~g~P~G~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~ 336 (508)
... ...|++++|+||+++||.| |+++++ +++++.+.+.... +..++++...+
T Consensus 209 ~~~~~~~~~di~~~s~sK~l~g~~~-G~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~~~~~~ 264 (407)
T 2dkj_A 209 LHPNPLPYAHVVTSTTHKTLRGPRG-GLILSNDPELGKRIDKLIFP-----------------------GIQGGPLEHVI 264 (407)
T ss_dssp CSCCCTTTCSEEEEESSGGGCCCSC-EEEEESCHHHHHHHHHHHTT-----------------------TTCSSCCHHHH
T ss_pred ccCCccccccEEEEeccccCCCCCc-eEEEECCHHHHHHHHhhhcc-----------------------cccCCCcHHHH
Confidence 111 1379999999998877876 999999 6877666543211 22356677777
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHH
Q 010538 337 ASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYRE 416 (508)
Q Consensus 337 ~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 416 (508)
+++.++++.+...+++++.+++.++++++.+.|+++ +++++.++. .++++++.++... .+...
T Consensus 265 ~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~-------~~~~~~~~~~~~~---~~~~~ 327 (407)
T 2dkj_A 265 AGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR-------GYRIVTGGT-------DNHLFLVDLRPKG---LTGKE 327 (407)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-------TCEEGGGSC-------SSSEEEEECGGGT---CCHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC-------CceeecCCC-------CceEEEEECcccC---CCHHH
Confidence 778888887655568999999999999999999986 577776432 2789999886421 23456
Q ss_pred HHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC----CCHHHHHHHH
Q 010538 417 VEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM----STFEDAKVNR 492 (508)
Q Consensus 417 l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~----~t~eev~~l~ 492 (508)
+.+.|.++||.+++|..+.... ....++++|+|++.+ .|.+|+++++
T Consensus 328 ~~~~l~~~gi~v~~~~~~~~~~-----------------------------~~~~~~~iRis~~~~~~~~~~~~~i~~~~ 378 (407)
T 2dkj_A 328 AEERLDAVGITVNKNAIPFDPK-----------------------------PPRVTSGIRIGTPAITTRGFTPEEMPLVA 378 (407)
T ss_dssp HHHHHHHTTEECEECCCTTCSS-----------------------------CTTTCSEEEEECHHHHHTTCCGGGHHHHH
T ss_pred HHHHHHHcCceecCCcCccccc-----------------------------cccCCCceeeecccccccCCCHHHHHHHH
Confidence 8888999999999876321100 001256899999865 7999999999
Q ss_pred Hhhhhhhhh
Q 010538 493 CSSFDFVNF 501 (508)
Q Consensus 493 ~~~~~~~~~ 501 (508)
++|+++++-
T Consensus 379 ~~l~~~~~~ 387 (407)
T 2dkj_A 379 ELIDRALLE 387 (407)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999988765
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-27 Score=241.66 Aligned_cols=335 Identities=12% Similarity=0.025 Sum_probs=228.4
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc----CCC--CCCceEEEcCC
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF----NAS--MKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~--~~~~~i~~t~g 111 (508)
++.+.|+.+.... +++.+.+++.+.+ ... ....|.. .....++++.+++++ |++ +++ +|++|+|
T Consensus 25 ~~~idl~~~~~~~~~~~~v~~a~~~~~-~~~---~~~~y~~----~~~~~~l~~~ia~~~~~~~g~~~~~~~-~v~~~~g 95 (376)
T 2dou_A 25 VGLIDLSIGSTDLPPPEAPLKALAEAL-NDP---TTYGYCL----KSCTLPFLEEAARWYEGRYGVGLDPRR-EALALIG 95 (376)
T ss_dssp CCCEECSSCCCCCCCCHHHHHHHHHHT-TCG---GGSSCCC----HHHHHHHHHHHHHHHHHHHSCCCCTTT-SEEEESS
T ss_pred CCEEeccCCCCCCCCCHHHHHHHHHHH-hCC---CcCCCCC----CCCCHHHHHHHHHHHHHHhCCCCCCCc-cEEEcCC
Confidence 4678888776543 4677777665433 210 0111221 133566777777776 875 221 6999999
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCC
Q 010538 112 ATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGAS 191 (508)
Q Consensus 112 ~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~ 191 (508)
+++|+.+++.++ .++|++|++....|+++. ..++..|.+++.+|.+....+ |+++++ ++
T Consensus 96 ~~~a~~~~~~~l-~~~gd~vl~~~p~y~~~~---~~~~~~g~~~~~~~~~~~~~~---------------d~~~l~--~~ 154 (376)
T 2dou_A 96 SQEGLAHLLLAL-TEPEDLLLLPEVAYPSYF---GAARVASLRTFLIPLREDGLA---------------DLKAVP--EG 154 (376)
T ss_dssp HHHHHHHHHHHH-CCTTCEEEEESSCCHHHH---HHHHHTTCEEEEECBCTTSSB---------------CGGGSC--HH
T ss_pred cHHHHHHHHHHh-cCCCCEEEECCCCcHhHH---HHHHHcCCEEEEeeCCCCCCC---------------CHHHHH--Hh
Confidence 999999999998 678899998886666554 445567999999998322222 456666 33
Q ss_pred CCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC---CCCCCC----CC
Q 010538 192 FPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT---QPPDLS----KY 264 (508)
Q Consensus 192 l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~---~~~d~~----~~ 264 (508)
+ .+++++|++++++||||.++|.+++.++++ +|+++|+++|+|++|+.+. .+.++. ..
T Consensus 155 l------~~~~~~v~l~~p~nptG~~~~~~~l~~l~~---------~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 219 (376)
T 2dou_A 155 V------WREAKVLLLNYPNNPTGAVADWGYFEEALG---------LARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAK 219 (376)
T ss_dssp H------HHHEEEEEECSSCTTTCCCCCHHHHHHHHH---------HHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGG
T ss_pred h------ccCceEEEECCCCCCcCccCCHHHHHHHHH---------HHHHcCCEEEEEccchhcccCCCCCChhhcCCCC
Confidence 3 356899999999999999999765555544 3444999999999998632 222322 12
Q ss_pred CCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHH
Q 010538 265 PVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHG 342 (508)
Q Consensus 265 ~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~a 342 (508)
+.++++.|+||++| ++| +|++++++++++.+..... ....+.+....+++.++
T Consensus 220 ~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~~------------------------~~~~~~~~~~~~a~~~~ 274 (376)
T 2dou_A 220 ERVVELFSLSKSYN-LAGFRLGFALGSEEALARLERVKG------------------------VIDFNQYAGVLRMGVEA 274 (376)
T ss_dssp GTEEEEEEHHHHHT-CGGGCCEEEEECHHHHHHHHHHHH------------------------HHCCCSCHHHHHHHHHH
T ss_pred CcEEEEecchhhcC-ChhheeEEEecCHHHHHHHHHHHH------------------------hcccCCCHHHHHHHHHH
Confidence 56799999999998 556 7999999888776654311 11123455555555556
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHh
Q 010538 343 FNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLAS 422 (508)
Q Consensus 343 l~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~ 422 (508)
++.. +..++.+++++.++++++.+.|+++ +++..+.. +.++++++++. .+..++.+.|.
T Consensus 275 l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~--------~~~~~~~~--------~~~~~~~~~~~----~~~~~~~~~l~ 333 (376)
T 2dou_A 275 LKTP-KEVVRGYARVYRERALGMAEALKGV--------LSLLPPRA--------TMYLWGRLPEG----VDDLEFGLRLV 333 (376)
T ss_dssp HTSC-HHHHHHHHHHHHHHHHHHHHHHTTT--------SEECCCCB--------SSEEEEECCTT----CCHHHHHHHHH
T ss_pred HhCc-HHHHHHHHHHHHHHHHHHHHHHHHh--------cCccCCCe--------eEEEEEECCCC----CCHHHHHHHHH
Confidence 5532 2236778888999999999999763 34443322 56788888642 23456888888
Q ss_pred hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 423 LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 423 ~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
++||.+++|..|... ..+++|+|++. +.++++++++.|++++
T Consensus 334 ~~gi~v~~g~~f~~~---------------------------------~~~~~Ris~~~--~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 334 ERGVALAPGRGFGPG---------------------------------GKGFVRIALVR--PLEELLEAAKRIREAL 375 (376)
T ss_dssp HTTEECEEGGGGCGG---------------------------------GTTEEEEECCS--CHHHHHHHHHHHHHTC
T ss_pred HCCEEEcCchhhCCC---------------------------------CCCeEEEEecC--CHHHHHHHHHHHHHHh
Confidence 889999998765421 15789999985 8999999999988764
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=235.49 Aligned_cols=316 Identities=12% Similarity=0.074 Sum_probs=225.3
Q ss_pred CCCeeeeCCCC-CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHH
Q 010538 39 NGTVYLDHAGA-TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALK 117 (508)
Q Consensus 39 ~~~iyld~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~ 117 (508)
++++.|..+.. .++++.+++++.+.+ .....+|... ..++|+++|++++++++ +|++|+|+|+|++
T Consensus 15 ~~~id~~~~~~~~~~~~~v~~a~~~~~-~~~~~y~~~~----------~~~lr~~la~~~~~~~~--~i~~t~g~~~al~ 81 (350)
T 3fkd_A 15 SEIVNFSTTVWTDGDKDHLEKHLVENL-NCIRHYPEPD----------AGTLRQMLAKRNSVDNN--AILVTNGPTAAFY 81 (350)
T ss_dssp -CCEECSCCSCCCSCCHHHHHHHHHTG-GGGGSCCCTT----------CHHHHHHHHHHTTCCGG--GEEEESHHHHHHH
T ss_pred ccEEEccCCCCCCCCCHHHHHHHHHhH-hHHhcCCCCc----------HHHHHHHHHHHhCcCHH--HEEEcCCHHHHHH
Confidence 56788877643 335677777765533 3333333211 14689999999999888 8999999999999
Q ss_pred HHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEcc-CCccCccccccccccccccccchhhhhcCCCCCCCC
Q 010538 118 LVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDV-EEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERD 196 (508)
Q Consensus 118 ~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~-~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~ 196 (508)
+++.++. |++|+++...|+++. ..++..|++++.+|. +....+ .
T Consensus 82 ~~~~~l~---gd~Vi~~~p~~~~~~---~~~~~~g~~~~~v~~~~~~~~~--------------------~--------- 126 (350)
T 3fkd_A 82 QIAQAFR---GSRSLIAIPSFAEYE---DACRMYEHEVCFYPSNEDIGEA--------------------D--------- 126 (350)
T ss_dssp HHHHHTT---TCEEEEEESCCHHHH---HHHHHTTCEEEEEETTSCGGGS--------------------C---------
T ss_pred HHHHHHC---CCEEEEeCCCcHHHH---HHHHHcCCeEEEEecCCccccC--------------------c---------
Confidence 9999984 899998886665544 555667999999998 543333 1
Q ss_pred CCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCC-----CCCCCCCCcEEEE
Q 010538 197 PAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQP-----PDLSKYPVDFVVM 271 (508)
Q Consensus 197 ~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~-----~d~~~~~~D~~~~ 271 (508)
.+++++|++++++||||.++|++++.++++. |++ .++|+|++|+..... ..+...+.++++.
T Consensus 127 --~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~---------~~~--~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~ 193 (350)
T 3fkd_A 127 --FSNMDFCWLCNPNNPDGRLLQRTEILRLLND---------HPD--TTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVY 193 (350)
T ss_dssp --CTTCSEEEEESSCTTTCCCCCHHHHHHHHHH---------CTT--SEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEE
T ss_pred --cCCCCEEEEeCCCCCcCCCCCHHHHHHHHHh---------CCC--CEEEEECchhhhccCcchhhHHhhcCCCEEEEe
Confidence 1467999999999999999999999999994 433 399999998743221 1222345669999
Q ss_pred eccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhc
Q 010538 272 SFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSL 349 (508)
Q Consensus 272 S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~ 349 (508)
|++|++| ++| +|++++++++++.+.... ...+++.....++.++++....
T Consensus 194 S~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~l~~~~~- 245 (350)
T 3fkd_A 194 SFSHAYG-IPGLRIGYIVANKDFMKRVAAFS--------------------------TPWAVNALAIEAAKFILIHPAQ- 245 (350)
T ss_dssp ESHHHHS-CGGGCCEEEECCHHHHHHHHTTC--------------------------CTTCSCHHHHHHHHHHHHCTTT-
T ss_pred cCchhcc-CcchheEeEEeCHHHHHHHHHhC--------------------------CCCCCCHHHHHHHHHHHhCHHH-
Confidence 9999998 445 899999888877665431 1234555555555555553221
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhh-CCCee
Q 010538 350 TVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASL-SGIQL 428 (508)
Q Consensus 350 g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~-~gI~v 428 (508)
-.+.+.+.. ++++++.+.|+++ +++++..+. ++++++.++.. +..++.+.|.+ +||.+
T Consensus 246 ~~~~~~~~~-~~~~~l~~~L~~~------~~~~~~~~~---------~~~~~~~~~~~-----~~~~l~~~L~~~~gi~v 304 (350)
T 3fkd_A 246 FTLPIRKWQ-RNTVDFITALNRL------DGVEVHPSG---------TTFFLLRLKKG-----TAAELKKYMLEEYNMLI 304 (350)
T ss_dssp TCCCHHHHH-HHHHHHHHHHHHS------TTEEECCCS---------SSEEEEEESSS-----CHHHHHHHHHHTTCEEC
T ss_pred HHHHHHHHH-HHHHHHHHHHhcC------CCcEECCCC---------CcEEEEECCCC-----CHHHHHHHHHHHCCEEE
Confidence 134444444 8899999999887 368875332 67888888753 23457888887 99999
Q ss_pred ccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 429 RTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 429 ~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
++|..|... .++++|||++ +.+|+++++++|+++.+
T Consensus 305 ~~g~~f~~~---------------------------------~~~~iRis~~---~~~~~~~l~~al~~~~~ 340 (350)
T 3fkd_A 305 RDASNFRGL---------------------------------DESYVRITTQ---RPAQNQLFIKALETFLE 340 (350)
T ss_dssp EECTTSTTC---------------------------------CTTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred EeCccCCCC---------------------------------CCCEEEEEcC---CHHHHHHHHHHHHHHHH
Confidence 999876431 2689999988 99999999999988764
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=242.38 Aligned_cols=360 Identities=12% Similarity=0.024 Sum_probs=236.5
Q ss_pred CCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCC--CCCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA--SMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~--~~~~~~i~~t~g~t~a 115 (508)
++.|+|+.+... .+++.+.+++.+.+ ... ......|.......++.+++.+.+.+.+|. +++. +|++|+|+++|
T Consensus 37 ~~~i~l~~~~~~~~~~~~v~~a~~~~~-~~~-~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~-~v~~~~g~~~a 113 (429)
T 1yiz_A 37 YKPLNLGQGFPDYHAPKYALNALAAAA-NSP-DPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMT-EVLVTVGAYEA 113 (429)
T ss_dssp HCCEECCSSSCSSCCCHHHHHHHHHHH-TCS-CGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTT-SEEEESHHHHH
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHH-hcc-ccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcC-CEEEecChHHH
Confidence 578999998765 35677777765544 221 000011111111233334444444444574 3321 59999999999
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPER 195 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~ 195 (508)
+.+++.++ ..+|++|++....|+++... ++..|.+++.+|.+.+..... ........|+++++ +++
T Consensus 114 ~~~~~~~~-~~~gd~Vl~~~p~y~~~~~~---~~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~d~~~l~--~~l--- 179 (429)
T 1yiz_A 114 LYATIQGH-VDEGDEVIIIEPFFDCYEPM---VKAAGGIPRFIPLKPNKTGGT-----ISSADWVLDNNELE--ALF--- 179 (429)
T ss_dssp HHHHHHHH-CCTTCEEEEEESCCTTHHHH---HHHTTCEEEEEECBCCCSSSS-----EEGGGCBCCHHHHH--HHC---
T ss_pred HHHHHHHh-cCCCCEEEEcCCCchhHHHH---HHHcCCEEEEEeCCccccccc-----ccccCcccCHHHHH--HHh---
Confidence 99999998 57889999998888776554 445699999999865310000 00000012688888 554
Q ss_pred CCCCCCceEEEEeCCCCCCccccC---HHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCCCCC---C-CC
Q 010538 196 DPAGDAYNLFAFPSECNFSGSRFN---LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQPPDL---S-KY 264 (508)
Q Consensus 196 ~~~~~~t~lv~~~~~~n~tG~~~~---i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d~---~-~~ 264 (508)
.+++++|++++++||||.++| +++|.++|++ +|+++|+|++|+. |....++ . ..
T Consensus 180 ---~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~------------~~~~li~De~~~~~~~~g~~~~~~~~~~~~~ 244 (429)
T 1yiz_A 180 ---NEKTKMIIINTPHNPLGKVMDRAELEVVANLCKK------------WNVLCVSDEVYEHMVFEPFEHIRICTLPGMW 244 (429)
T ss_dssp ---CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH------------HTCEEEEECTTTTCBCTTSCCCCGGGSTTTG
T ss_pred ---ccCceEEEECCCCCCCCccCCHHHHHHHHHHHHH------------cCcEEEEeccccccccCCCCCcChhhccCCc
Confidence 467899999999999999998 5555666665 9999999999985 2212222 1 34
Q ss_pred CCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHH
Q 010538 265 PVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHG 342 (508)
Q Consensus 265 ~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~a 342 (508)
+.|+++.|+||++| ++| +|++++++++++.+.+... ...++.+....+++.++
T Consensus 245 ~~~~~~~s~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~~------------------------~~~~~~~~~~~~a~~~~ 299 (429)
T 1yiz_A 245 ERTITIGSAGKTFS-LTGWKIGWAYGPEALLKNLQMVHQ------------------------NCVYTCATPIQEAIAVG 299 (429)
T ss_dssp GGEEEEEEHHHHHT-CGGGCCEEEESCHHHHHHHHHHHH------------------------TTTCCCCHHHHHHHHHH
T ss_pred CceEEEecchhccC-CCCcceEEEEeCHHHHHHHHHHHh------------------------hcccCCChHHHHHHHHH
Confidence 68999999999998 668 8999999888766554310 11234555556666667
Q ss_pred HHH-----HH-hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCC-------
Q 010538 343 FNL-----IN-SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDG------- 409 (508)
Q Consensus 343 l~~-----~~-~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------- 409 (508)
++. .. +..++++++++.++++++.+.|+++ ++++..+.. +.++++++++...
T Consensus 300 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~ 364 (429)
T 1yiz_A 300 FETELKRLKSPECYFNSISGELMAKRDYMASFLAEV-------GMNPTVPQG--------GYFMVADWSSLDSKVDLTQE 364 (429)
T ss_dssp HHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH-------TCEEEECSB--------SSEEEEECCSSCTTTTCCSS
T ss_pred HhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhC-------CCcccCCCc--------ceEEEEEccccccccccccc
Confidence 765 21 2237888899999999999999886 566665533 6789999865310
Q ss_pred -CccCHHHHHHHH-hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHH
Q 010538 410 -SWFGYREVEKLA-SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFED 487 (508)
Q Consensus 410 -~~~~~~~l~~~L-~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ee 487 (508)
...+..++.+.| +++||.+++|..|...... +...+++|||++ +++++
T Consensus 365 ~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~----------------------------~~~~~~iRis~~--~~~e~ 414 (429)
T 1yiz_A 365 TDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNK----------------------------HLGEDFVRYCFF--KKDEN 414 (429)
T ss_dssp SSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGG----------------------------GGTTTEEEEECC--SCHHH
T ss_pred ccCCCHHHHHHHHHHhCCEEEeCchHhCCCccc----------------------------CCCCCeEEEEec--CCHHH
Confidence 002234566666 5799999988654322100 001578999998 49999
Q ss_pred HHHHHHhhhhhhh
Q 010538 488 AKVNRCSSFDFVN 500 (508)
Q Consensus 488 v~~l~~~~~~~~~ 500 (508)
++++++.|+++++
T Consensus 415 i~~~l~~l~~~l~ 427 (429)
T 1yiz_A 415 LQKAAEILRKWKG 427 (429)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhcc
Confidence 9999999987754
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-26 Score=235.77 Aligned_cols=321 Identities=14% Similarity=0.077 Sum_probs=231.7
Q ss_pred CCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHH------cCCCCCCceEEEcCCh
Q 010538 40 GTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDY------FNASMKDYKCIFTSGA 112 (508)
Q Consensus 40 ~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~------~~~~~~~~~i~~t~g~ 112 (508)
..++|+.+... ++++.+.+++.+.+. .... ....|.... ..++++.++++ ++++++ +|++|+|+
T Consensus 31 ~~idl~~~~~~~~~~~~v~~a~~~~~~-~~~~-~~~~y~~~~-----~~~l~~~la~~l~~~~g~~~~~~--~v~~~~G~ 101 (369)
T 3cq5_A 31 VDIRLNTNENPYPPSEALVADLVATVD-KIAT-ELNRYPERD-----AVELRDELAAYITKQTGVAVTRD--NLWAANGS 101 (369)
T ss_dssp CSEECSSCCCCSCCCHHHHHHHHHHHH-HHGG-GTTSCCCTT-----CHHHHHHHHHHHHHHHCCCCCGG--GEEEESHH
T ss_pred cceeccCCCCCCCCCHHHHHHHHHHHH-hccc-ccccCCCcc-----HHHHHHHHHHhhhhcccCCCChH--hEEECCCh
Confidence 35788877653 356777777655442 2100 011121111 13566667776 566677 89999999
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCC
Q 010538 113 TAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASF 192 (508)
Q Consensus 113 t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l 192 (508)
++++++++.++ .++|++|+++...|+++.. .++..|.+++.+|.+.+..+ |+++++ +++
T Consensus 102 ~~al~~~~~~l-~~~gd~Vl~~~~~y~~~~~---~~~~~g~~~~~v~~~~~~~~---------------d~~~l~--~~i 160 (369)
T 3cq5_A 102 NEILQQLLQAF-GGPGRTALGFQPSYSMHPI---LAKGTHTEFIAVSRGADFRI---------------DMDVAL--EEI 160 (369)
T ss_dssp HHHHHHHHHHH-CSTTCEEEEEESSCTHHHH---HHHHTTCEEEEEECCTTSSC---------------CHHHHH--HHH
T ss_pred HHHHHHHHHHh-cCCCCEEEEcCCChHHHHH---HHHHcCCEEEEecCCcCCCC---------------CHHHHH--HHh
Confidence 99999999998 6788999999988876654 34556999999997654344 577777 444
Q ss_pred CCCCCCCC-CceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCC---C-CCCC-C
Q 010538 193 PERDPAGD-AYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPD---L-SKYP-V 266 (508)
Q Consensus 193 ~~~~~~~~-~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d---~-~~~~-~ 266 (508)
.+ ++++|++++++||||.++|.+++.++++. +++++|+|++|+.+....+ + ...+ .
T Consensus 161 ------~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~------------~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 222 (369)
T 3cq5_A 161 ------RAKQPDIVFVTTPNNPTGDVTSLDDVERIINV------------APGIVIVDEAYAEFSPSPSATTLLEKYPTK 222 (369)
T ss_dssp ------HHHCCSEEEEESSCTTTCCCCCHHHHHHHHHH------------CSSEEEEECTTGGGCCSCCGGGGTTTCTTT
T ss_pred ------hccCCCEEEEeCCCCCCCCCCCHHHHHHHHHh------------CCCEEEEECCchhhcCCcchHHHHhhCCCC
Confidence 23 67899999999999999999999999997 6799999999987653322 1 2335 6
Q ss_pred cEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHH
Q 010538 267 DFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFN 344 (508)
Q Consensus 267 D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~ 344 (508)
++++.|+||++| ++| +|++++++++++.+.+... ..+++....+++.++++
T Consensus 223 ~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~~--------------------------~~~~~~~~~~a~~~~l~ 275 (369)
T 3cq5_A 223 LVVSRTMSKAFD-FAGGRLGYFVANPAFIDAVMLVRL--------------------------PYHLSALSQAAAIVALR 275 (369)
T ss_dssp EEEEEESSSTTS-CGGGCCEEEEECTHHHHHHHTTSC--------------------------TTCSCHHHHHHHHHHHH
T ss_pred EEEEEechHhcC-CcccceEEEEeCHHHHHHHHHcCC--------------------------CCCCCHHHHHHHHHHhc
Confidence 799999999998 447 7999999888766554310 12355566666666666
Q ss_pred HHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhC
Q 010538 345 LINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLS 424 (508)
Q Consensus 345 ~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~ 424 (508)
.. ..++.+++++.++++++.+.|++. ++++. +.. ++++++.++ . +..++.+.|.++
T Consensus 276 ~~--~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~-~~~--------~~~~~~~~~-~-----~~~~l~~~l~~~ 331 (369)
T 3cq5_A 276 HS--ADTLGTVEKLSVERVRVAARLEEL-------GYAVV-PSE--------SNFVFFGDF-S-----DQHAAWQAFLDR 331 (369)
T ss_dssp TH--HHHHTHHHHHHHHHHHHHHHHHHH-------TCEEE-CCS--------SSEEEEECC-S-----SHHHHHHHHHHT
T ss_pred CH--HHHHHHHHHHHHHHHHHHHHHHhC-------CCEEC-CCC--------CeEEEEECC-C-----CHHHHHHHHHHC
Confidence 42 236778889999999999999875 57765 322 678888875 1 234588888899
Q ss_pred CCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 425 GIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 425 gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
||.+++|. .++++|+|++ |.+|++++++.|+++++
T Consensus 332 gi~v~~~~--------------------------------------~~~~iRis~~---~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 332 GVLIRDVG--------------------------------------IAGHLRTTIG---VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp TEECBCCS--------------------------------------CTTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred CEEEEECC--------------------------------------CCCeEEEEeC---CHHHHHHHHHHHHHHHh
Confidence 99998861 1478999998 89999999999988764
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-27 Score=249.14 Aligned_cols=343 Identities=13% Similarity=0.031 Sum_probs=232.5
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCC-CccchhhhhhHHHHHHHHHHHHHc----CCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPH-SQSDISLATCDIVRAAREQVLDYF----NASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~la~~~----~~~~~~~~i~~t~g~ 112 (508)
++.|.|..+.... +++.+++++.+.. .....++. ..|.. .....++++.+++++ +++++ +|++|+|+
T Consensus 69 ~~~i~l~~g~~~~~~~~~v~~a~~~~~-~~~~~~~~~~~y~~----~~g~~~lr~~ia~~~~~g~~~~~~--~i~~t~G~ 141 (449)
T 3qgu_A 69 AKIISLGIGDTTEPLPKYIADAMAKAA-AGLATREGYSGYGA----EQGQGALREAVASTFYGHAGRAAD--EIFISDGS 141 (449)
T ss_dssp CCCEECSSCCCCCCCCHHHHHHHHHHH-HGGGGSCCCCCSTT----TTCCHHHHHHHHHHHHTTTTCCGG--GEEEESCH
T ss_pred CCEEEeeCCCCCCCCCHHHHHHHHHHH-HhhccccCCCCCCC----CCCcHHHHHHHHHHHHcCCCCCHH--HEEEccCH
Confidence 5789998886544 5677777765544 32221111 12211 122466788888887 77777 89999999
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCe----------EEEEccCCccCccccccccccccccccc
Q 010538 113 TAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAA----------AFAIDVEEAVDNDGLSESLVTSTKISLL 182 (508)
Q Consensus 113 t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~----------v~~v~~~~~~~~~~l~~~~~~~~~~~~d 182 (508)
++++.++ .++ .++|+.|+++...|+++....+. .|.+ ++.+|.+....+.
T Consensus 142 ~~al~~~-~~l-~~~gd~Vl~~~p~~~~~~~~~~~---~g~~g~~~~~~~~~~~~~~~~~~~~~~--------------- 201 (449)
T 3qgu_A 142 KCDIARI-QMM-FGSKPTVAVQDPSYPVYVDTSVM---MGMTGDHNGTGFDGIEYMVCNPDNHFF--------------- 201 (449)
T ss_dssp HHHHHHH-HHH-HCSSSCEEEEESCCTHHHHHHHH---HTCSCCBCSSSBTTEEEEECCGGGTTC---------------
T ss_pred HHHHHHH-HHH-hCCCCEEEEcCCCChhHHHHHHH---cCCcccccccccceeEEEecccccCCc---------------
Confidence 9999998 776 57899999998888877655544 4777 8889887543331
Q ss_pred hhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCC
Q 010538 183 PIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQP 258 (508)
Q Consensus 183 ~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~ 258 (508)
.+++ . .+++++|++++++||||.++|.+++.++++ +|+++|+++|+|++|+. +..+
T Consensus 202 -~~~~--------~--~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~---------l~~~~~~~li~Dea~~~~~~~~~~~ 261 (449)
T 3qgu_A 202 -PDLS--------K--AKRTDIIFFCSPNNPTGAAATRAQLTELVN---------FARKNGSILVYDAAYALYISNPDCP 261 (449)
T ss_dssp -CCGG--------G--CCCCSEEEEESSCTTTCCCCCHHHHHHHHH---------HHHHHTCEEEEECTTGGGCCCTTSC
T ss_pred -CChh--------H--cCCCCEEEEeCCCCCCCCcCCHHHHHHHHH---------HHHHCCcEEEEEcchHhhhcCCCCC
Confidence 1122 0 156799999999999999999776666655 44559999999999986 3333
Q ss_pred CCCCCC----CCcEEEEeccccccCCCc--ceEEEEechhHhh-hccccccCceEEecccchhhhhhccCccccccCCCC
Q 010538 259 PDLSKY----PVDFVVMSFYKIFGYPTG--LGALIMRNDAAKL-LKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTA 331 (508)
Q Consensus 259 ~d~~~~----~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~-l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 331 (508)
.++... ++++++.|++|++| ++| +|+++++++.++. ..+.... +. ........+.
T Consensus 262 ~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~~~~~~~~~~~~~~~------------~~-----~~~~~~~~~~ 323 (449)
T 3qgu_A 262 KTIYEIPGADEVAIETCSFSKYAG-FTGVRLGWTVVPKALKYANGEPVHAD------------WN-----RVMTTCFNGA 323 (449)
T ss_dssp SSGGGSTTGGGTEEEEEECSGGGT-CTTCCCEEEECCTTCBCTTSCBHHHH------------HH-----HHHHHSCCCC
T ss_pred CCHhhccCCCCcEEEEecchhhcC-CccceeEEEecCHHHHhhhhhhHHHH------------HH-----HHhhcccCCC
Confidence 344332 46799999999998 556 8999998877542 0000000 00 0111122345
Q ss_pred ChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCc
Q 010538 332 SFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSW 411 (508)
Q Consensus 332 ~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 411 (508)
+.....+..++++......++++.+++.++++++.+.|+++ ++++..+.. +.++++.+++
T Consensus 324 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~--------~~~~~~~~~~----- 383 (449)
T 3qgu_A 324 SNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEM-------GFSVYGGDD--------APYIWVGFPG----- 383 (449)
T ss_dssp CHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TCCEEESSS--------SSEEEEECTT-----
T ss_pred CHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC-------CCeeeCCCC--------eeEEEEECCC-----
Confidence 55555555555543222236788999999999999999886 577765543 7888888863
Q ss_pred cCHHHHHHHHh-hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHH
Q 010538 412 FGYREVEKLAS-LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKV 490 (508)
Q Consensus 412 ~~~~~l~~~L~-~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~ 490 (508)
.+..++.+.|. ++||.+++|..|.+. .++++|||+. .|.+++++
T Consensus 384 ~~~~~~~~~l~~~~gI~v~pg~~f~~~---------------------------------~~~~iRis~~--~~~e~i~~ 428 (449)
T 3qgu_A 384 KPSWDVFAEILERCNIVTTPGSGYGPA---------------------------------GEGFVRASAF--GSRENILE 428 (449)
T ss_dssp SCHHHHHHHHHHHHCEECEEGGGGCGG---------------------------------GTTEEEEECC--SCHHHHHH
T ss_pred CCHHHHHHHHHHHCCEEEecchHhCCC---------------------------------CCCeEEEEec--CCHHHHHH
Confidence 23345665554 469999998766542 2689999964 49999999
Q ss_pred HHHhhhhhhhh
Q 010538 491 NRCSSFDFVNF 501 (508)
Q Consensus 491 l~~~~~~~~~~ 501 (508)
+++.|+++++-
T Consensus 429 ~l~~l~~~~~~ 439 (449)
T 3qgu_A 429 AVRRFKEAYGK 439 (449)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHh
Confidence 99999987754
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.2e-27 Score=247.50 Aligned_cols=358 Identities=12% Similarity=-0.006 Sum_probs=243.8
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKL 118 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~ 118 (508)
...+||+ +.++...|.+++++.+.+ .. .+|......+....++.+++++++++++|++. .+++|+|+++|+.+
T Consensus 66 ~~~~~lg-~~~~~~~p~v~~~~~~~~-~~--~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~---~~~~~~ggt~a~~~ 138 (474)
T 1wyu_B 66 TTFYPLG-SCTMKYNPKLHEEAARLF-AD--LHPYQDPRTAQGALRLMWELGEYLKALTGMDA---ITLEPAAGAHGELT 138 (474)
T ss_dssp TSCCCBT-TTCCCCCCHHHHHHHHTT-SS--CCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSE---EECCCSSHHHHHHH
T ss_pred cCccccc-cccccCCHHHHHHHHHHH-Hh--cCCCCchhhChHHHHHHHHHHHHHHHHHCCCc---eeecChHHHHHHHH
Confidence 3578898 555556677877776642 22 23433221344567888999999999999974 47788999999987
Q ss_pred HHhhcC---CCCCC-----eEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCC
Q 010538 119 VGEAFP---WSHQS-----SYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGA 190 (508)
Q Consensus 119 ~~~~l~---~~~g~-----~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~ 190 (508)
++.++. ..+|+ +|+++...|+++...+ +..|++++.||.+.++.+ |+++++ +
T Consensus 139 al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~---~~~G~~vv~v~~~~~~~~---------------d~~~L~--~ 198 (474)
T 1wyu_B 139 GILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATA---SMAGYQVREIPSGPEGEV---------------DLEALK--R 198 (474)
T ss_dssp HHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHH---HHTTCEEEEECBCTTSSB---------------CHHHHH--H
T ss_pred HHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHH---HHCCCEEEEecCCCCCCc---------------CHHHHH--H
Confidence 554431 23555 8999999999887654 446999999998766655 688898 5
Q ss_pred CCCCCCCCCCCceEEEEeCCCCCCccc-cCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC-CCCCCCCCCcE
Q 010538 191 SFPERDPAGDAYNLFAFPSECNFSGSR-FNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ-PPDLSKYPVDF 268 (508)
Q Consensus 191 ~l~~~~~~~~~t~lv~~~~~~n~tG~~-~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~-~~d~~~~~~D~ 268 (508)
++ +++|++|+++++ |++|.+ .|+++|.++|++ +|+++|+|++|+.+.. ..+...+++|+
T Consensus 199 ~i------~~~t~~v~~~~p-n~~G~~~~~l~~i~~l~~~------------~g~~li~Dea~~~~~~g~~~~~~~g~di 259 (474)
T 1wyu_B 199 EL------GPHVAALMLTNP-NTLGLFERRILEISRLCKE------------AGVQLYYDGANLNAIMGWARPGDMGFDV 259 (474)
T ss_dssp HC------STTEEEEEECSS-CTTSCCCTTHHHHHHHHHH------------HTCEEEEEGGGGGGTTTTCCHHHHTCSE
T ss_pred hh------CCCceEEEEECC-CCCcccCCCHHHHHHHHHH------------cCCEEEEeCchhhhhccCCCcccCCCcE
Confidence 55 467899999986 689998 699999999998 8999999999976654 33444457999
Q ss_pred EEEeccccccCCC-----cceEEEEechhHhhhcccccc-CceEEecccchhhhhhccCccccccCCCCChhHHHHHHHH
Q 010538 269 VVMSFYKIFGYPT-----GLGALIMRNDAAKLLKNTYFS-GGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHG 342 (508)
Q Consensus 269 ~~~S~~K~~g~P~-----G~G~l~~~~~~~~~l~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~a 342 (508)
+++|+||+|+.|. |+|++++++++++.+...+.+ ++. .+.. .+. .....+++..++.+...+.+....
T Consensus 260 ~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~~g~-~~~~---~~~--~~~~~~~~~~~~~~~~~~~aa~~~ 333 (474)
T 1wyu_B 260 VHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEE-GFYL---DFD--RPKSIGRVRSFYGNFLALVRAWAY 333 (474)
T ss_dssp EECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSS-CEEE---ECC--CTTCCCCSSSTTSCHHHHHHHHHH
T ss_pred EEEeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCeeeccCC-eeEe---ccc--CcccCcccccCcCcHHHHHHHHHH
Confidence 9999999988774 589999999987766522221 110 0000 000 000012334445555444444444
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHh
Q 010538 343 FNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLAS 422 (508)
Q Consensus 343 l~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~ 422 (508)
++.+...+++++.+++.++++++.+.|+++ ++++..+... .+.+++.++. ..+..++.+.|.
T Consensus 334 l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~~-------~~~~~~~~~~----~~~~~~l~~~L~ 395 (474)
T 1wyu_B 334 IRTLGLEGLKKAAALAVLNARYLKELLKEK-------GYRVPYDGPS-------MHEFVAQPPE----GFRALDLAKGLL 395 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TCBCSSCSSC-------CSCEEEBCST----TCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------CcEecCCCCc-------ceEEEEEcCC----CCCHHHHHHHHH
Confidence 444334457777999999999999999886 4555322211 2223344421 134566888898
Q ss_pred hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 423 LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 423 ~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
++||.+. +..+. ....+.+||+++.++|.+|++++++.|+++++
T Consensus 396 ~~Gi~~~-~~~~~---------------------------------~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~ 439 (474)
T 1wyu_B 396 ELGFHPP-TVYFP---------------------------------LIVKEALMVEPTETEAKETLEAFAEAMGALLK 439 (474)
T ss_dssp HTTCCCC-EESCS---------------------------------TTSTTCEEECCCTTSCHHHHHHHHHHHHHHHT
T ss_pred HCCcccc-ccccc---------------------------------cccCCEEEEEeecCCCHHHHHHHHHHHHHHHH
Confidence 8899863 22110 01257899999999999999999999998764
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-27 Score=245.24 Aligned_cols=356 Identities=12% Similarity=0.045 Sum_probs=238.9
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCC--CC-CCceEEEcCChHH
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA--SM-KDYKCIFTSGATA 114 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~--~~-~~~~i~~t~g~t~ 114 (508)
++.|.|..+.... +++.+.+++.+.+.... ....|.......++.+++.+.+.+.+|. ++ + +|++|+|+++
T Consensus 28 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~---~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~--~i~~~~g~~~ 102 (422)
T 3fvs_A 28 HDVVNLGQGFPDFPPPDFAVEAFQHAVSGDF---MLNQYTKTFGYPPLTKILASFFGELLGQEIDPLR--NVLVTVGGYG 102 (422)
T ss_dssp SCCEECCCSSCSSCCCHHHHHHHHHHHHSCG---GGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHH--HEEEESHHHH
T ss_pred CCceEeCCCCCCCCCCHHHHHHHHHHHhCCC---ccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC--cEEEECChHH
Confidence 5789998887553 46667776655432211 0011111111233444444555555554 44 4 7999999999
Q ss_pred HHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC----ccCccccccccccccccccchhhhhcCC
Q 010538 115 ALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE----AVDNDGLSESLVTSTKISLLPIQRRKGA 190 (508)
Q Consensus 115 al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~----~~~~~~l~~~~~~~~~~~~d~~~l~~~~ 190 (508)
|+++++.++ ..+|++|++....|+++... ++..|.+++.+|.+. ++... .......|+++++ +
T Consensus 103 a~~~~~~~~-~~~gd~vl~~~p~~~~~~~~---~~~~g~~~~~~~~~~~~~~~G~~~-------~~~~~~~d~~~l~--~ 169 (422)
T 3fvs_A 103 ALFTAFQAL-VDEGDEVIIIEPFFDCYEPM---TMMAGGRPVFVSLKPGPIQNGELG-------SSSNWQLDPMELA--G 169 (422)
T ss_dssp HHHHHHHHH-CCTTCEEEEEESCCTTHHHH---HHHTTCEEEEEECBCCCCCSSSCC-------BGGGSBCCHHHHH--T
T ss_pred HHHHHHHHH-cCCCCEEEEcCCCchhhHHH---HHHcCCEEEEEecccccccccccc-------cccCCCCCHHHHH--h
Confidence 999999998 68899999988777776544 445699999999875 22100 0011123789999 5
Q ss_pred CCCCCCCCCCCceEEEEeCCCCCCccccC---HHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCCCCCCC
Q 010538 191 SFPERDPAGDAYNLFAFPSECNFSGSRFN---LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQPPDLSK 263 (508)
Q Consensus 191 ~l~~~~~~~~~t~lv~~~~~~n~tG~~~~---i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d~~~ 263 (508)
++ .+++++|++++++||||.++| +++|.++|++ +|+++|+|++|+. |..+.++..
T Consensus 170 ~~------~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~------------~~~~li~De~~~~~~~~~~~~~~~~~ 231 (422)
T 3fvs_A 170 KF------TSRTKALVLNTPNNPLGKVFSREELELVASLCQQ------------HDVVCITDEVYQWMVYDGHQHISIAS 231 (422)
T ss_dssp TC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH------------HTCEEEEECTTTTCBCTTCCCCCGGG
T ss_pred hc------CCCceEEEECCCCCCCCcCCCHHHHHHHHHHHHH------------cCcEEEEEccchhhccCCCCCCChhh
Confidence 55 467899999999999999997 4555555554 9999999999985 333344433
Q ss_pred C----CCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHH
Q 010538 264 Y----PVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIA 337 (508)
Q Consensus 264 ~----~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~ 337 (508)
. +.++++.|+||++| ++| +|++++++++++.+..... ....+.+....+
T Consensus 232 ~~~~~~~~i~~~S~sK~~g-~~G~r~G~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~ 286 (422)
T 3fvs_A 232 LPGMWERTLTIGSAGKTFS-ATGWKVGWVLGPDHIMKHLRTVHQ------------------------NSVFHCPTQSQA 286 (422)
T ss_dssp STTTGGGEEEEEEHHHHHT-CGGGCCEEEECCHHHHHHHHHHHH------------------------TTTCCCCHHHHH
T ss_pred cccccCcEEEEecchhccC-CccceEEEEEeCHHHHHHHHHHHh------------------------hccCCCCcHHHH
Confidence 2 45589999999998 556 8999999988776543311 112344556666
Q ss_pred HHHHHHHHH------HhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCC----
Q 010538 338 SIRHGFNLI------NSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRP---- 407 (508)
Q Consensus 338 ~l~~al~~~------~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---- 407 (508)
++.++++.. ....++.+.+++.++++++.+.|+++ +++++.+.. +.++++.+...
T Consensus 287 a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~--------~~~~~~~~~~~~~~~ 351 (422)
T 3fvs_A 287 AVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-------GLKPIIPQG--------SYFLITDISDFKRKM 351 (422)
T ss_dssp HHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTT-------TCEEEBCSB--------SSEEEEECHHHHHHC
T ss_pred HHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHc-------CCeecCCCe--------eeEEEEechhhcccc
Confidence 666666631 12346888999999999999999987 577776654 67888887531
Q ss_pred CC-----CccCHHHHHH-HHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCC
Q 010538 408 DG-----SWFGYREVEK-LASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGY 481 (508)
Q Consensus 408 ~~-----~~~~~~~l~~-~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~ 481 (508)
+. ......++.+ +++++||.+.+|..|..+... ....+++|+|++.
T Consensus 352 ~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~----------------------------~~~~~~iRis~~~ 403 (422)
T 3fvs_A 352 PDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQ----------------------------KHFDHYIRFCFVK 403 (422)
T ss_dssp CCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHH----------------------------TTSCSEEEEECCC
T ss_pred cccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCC----------------------------CCCCCeEEEEecC
Confidence 00 0000223444 467789999999877653210 0136899999987
Q ss_pred CCCHHHHHHHHHhhhhhhh
Q 010538 482 MSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 482 ~~t~eev~~l~~~~~~~~~ 500 (508)
|.++++.+++.|+++++
T Consensus 404 --~~e~i~~~l~~l~~~l~ 420 (422)
T 3fvs_A 404 --DEATLQAMDEKLRKWKV 420 (422)
T ss_dssp --CHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHh
Confidence 99999999999988765
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.3e-27 Score=241.78 Aligned_cols=350 Identities=11% Similarity=-0.002 Sum_probs=226.5
Q ss_pred CCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHH
Q 010538 40 GTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLV 119 (508)
Q Consensus 40 ~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~ 119 (508)
...-.++.++++..+.+.+++ .. +.++...+..+.......+++++.+++++|.+ + .++++ ++++|++++
T Consensus 27 ~~~~p~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~r~~~~~~~~l~~~la~~~g~~-~--~i~~~-sG~~a~~~~ 96 (398)
T 1gc0_A 27 ALVPPVYQTATFTFPTVEYGA-AC-----FAGEQAGHFYSRISNPTLNLLEARMASLEGGE-A--GLALA-SGMGAITST 96 (398)
T ss_dssp BSSCCBCCCSCBCCC---------------------------CCHHHHHHHHHHHHHHTCS-E--EEEES-SHHHHHHHH
T ss_pred CcCCCccCCCccccCCHHHHH-Hh-----hcCCcCCCcccCCCChHHHHHHHHHHHHhCCC-c--EEEEC-CHHHHHHHH
Confidence 456678888888777665544 21 23343333333334567889999999999986 3 45555 457999999
Q ss_pred HhhcCCCCCCeEEEecccccchHHHHHH-HHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCC
Q 010538 120 GEAFPWSHQSSYMYTMENHNSVLGIREY-ALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPA 198 (508)
Q Consensus 120 ~~~l~~~~g~~vl~~~~~h~s~~~~~~~-~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~ 198 (508)
+.++ .++|++|+++...|+++....+. ++..|++++.++.+ |+++++ +++
T Consensus 97 l~~~-~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--------------------d~~~l~--~~i------ 147 (398)
T 1gc0_A 97 LWTL-LRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMA--------------------DLQALE--AAM------ 147 (398)
T ss_dssp HHHH-CCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTT--------------------CHHHHH--HHC------
T ss_pred HHHH-hcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC--------------------CHHHHH--Hhc------
Confidence 9998 67889999999999987765543 35679999998863 356677 444
Q ss_pred CCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEecccccc
Q 010538 199 GDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFG 278 (508)
Q Consensus 199 ~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g 278 (508)
.++|++|++++++||||.+.|+++|.++|++ +|+++|+|++|+.+....++ ..++|+++.|+||+++
T Consensus 148 ~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~li~D~~~~~~~~~~~~-~~~~d~~~~S~sK~~~ 214 (398)
T 1gc0_A 148 TPATRVIYFESPANPNMHMADIAGVAKIARK------------HGATVVVDNTYCTPYLQRPL-ELGADLVVHSATKYLS 214 (398)
T ss_dssp CTTEEEEEEESSCTTTCCCCCHHHHHHHHGG------------GTCEEEEECTTTHHHHCCGG-GGTCSEEEEETTTTTT
T ss_pred CCCCeEEEEECCCCCCcccccHHHHHHHHHH------------cCCEEEEECCCcccccCCch-hhCceEEEECCccccC
Confidence 4578999999999999999999999999998 89999999999876644333 3579999999999999
Q ss_pred CCCc--ceEEEEechhHh-hhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHH
Q 010538 279 YPTG--LGALIMRNDAAK-LLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAIC 355 (508)
Q Consensus 279 ~P~G--~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~ 355 (508)
+|.+ .|+++++++.++ .+.+...+ +..++.+....+++..+++. +....
T Consensus 215 ~~~~~~~G~l~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~l~~-----~~~~~ 266 (398)
T 1gc0_A 215 GHGDITAGIVVGSQALVDRIRLQGLKD-----------------------MTGAVLSPHDAALLMRGIKT-----LNLRM 266 (398)
T ss_dssp CSSSCCCEEEEECHHHHHHHHHTHHHH-----------------------HTCCCCCHHHHHHHHHHHTT-----HHHHH
T ss_pred CCCCCeEEEEEEChHHHHHHHHHHhhc-----------------------cCCCCCCHHHHHHHHhccch-----HHHHH
Confidence 7765 499999887654 34332111 02345565555555555543 34455
Q ss_pred HHHHHHHHHHHHHHhcccC--------CCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCe
Q 010538 356 RHIASLGMYVRKVLLSLRH--------ENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQ 427 (508)
Q Consensus 356 ~~~~~l~~~l~~~L~~l~~--------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~ 427 (508)
++..+.++++.+.|++.+. ....++++++.+... ..+++++|.+++. ...+.+.+.+.|+.
T Consensus 267 ~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~l~~~------~~~~~~~l~~~~i~ 335 (398)
T 1gc0_A 267 DRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMS-----QPGGMIAFELKGG------IGAGRRFMNALQLF 335 (398)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEEEC---------------------CCTTEEEEEETTH------HHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCC-----CCceEEEEEECCC------HHHHHHHHHhCCCc
Confidence 5666667777777766421 001123344433211 2389999998642 12367788888888
Q ss_pred ecc---CCC------CCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 428 LRT---GCF------CNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 428 v~~---g~~------~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
++. |.. |..... ..-+++.+.++|. .++.||+|++..+++++|+.+.++|+++
T Consensus 336 ~~~~s~G~~~sl~~~~~~~~~----~~~~~~~~~~~g~--------------~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 336 SRAVSLGDAESLAQHPASMTH----SSYTPEERAHYGI--------------SEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp EECSCCSCSSCEEECGGGTTT----SSSCHHHHHHTTC--------------CTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred eeccCCCCcceeeeccccccc----ccCCHHHHHhcCC--------------CCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 765 422 221110 0123445556654 2689999999999999999999998764
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=240.04 Aligned_cols=329 Identities=12% Similarity=0.059 Sum_probs=219.5
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEEccC
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDVE 161 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~~ 161 (508)
....+++++++++++|++ ++++++|+++|+++++.++ .++|++|+++..+|+++..... .++..|++++.++.+
T Consensus 55 ~~~~~~l~~~la~~~g~~----~~~~~~~gt~a~~~al~~l-~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 129 (412)
T 2cb1_A 55 DPTAKALEERLKALEGAL----EAVVLASGQAATFAALLAL-LRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDPE 129 (412)
T ss_dssp CHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHTT-CCTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECSS
T ss_pred ChHHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC
Confidence 356788999999999975 5899999999999999998 6789999999999987665443 355679999999864
Q ss_pred CccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCC
Q 010538 162 EAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK 241 (508)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~ 241 (508)
+++++ +++ .++|++|++++++|+||.+.|+++|.++|++
T Consensus 130 ---------------------~~~l~--~~i------~~~~~~v~~~~~~n~~G~~~~l~~i~~l~~~------------ 168 (412)
T 2cb1_A 130 ---------------------PEAVR--EAL------SAKTRAVFVETVANPALLVPDLEALATLAEE------------ 168 (412)
T ss_dssp ---------------------HHHHH--HHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHH------------
T ss_pred ---------------------HHHHH--HHh------ccCCeEEEEeCCCCCCcccccHHHHHHHHHH------------
Confidence 34556 333 4578999999999999999999999999998
Q ss_pred CCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc-ceEEEEechhHh-----hhc-cccccCceEEecccchh
Q 010538 242 GRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG-LGALIMRNDAAK-----LLK-NTYFSGGTVAASIADID 314 (508)
Q Consensus 242 ~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G-~G~l~~~~~~~~-----~l~-~~~~g~~~~~~~~~~~~ 314 (508)
+|+++|+|++|+.+....+....++|++++|+||++++|.+ +|++++.++... .+. |...|+... .......
T Consensus 169 ~~~~li~D~~~~~~~~~~~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~ 247 (412)
T 2cb1_A 169 AGVALVVDNTFGAAGALCRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPW-EALRARC 247 (412)
T ss_dssp HTCEEEEECGGGTTTTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------H-HHHGGGH
T ss_pred cCCEEEEECCCccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchh-hccchHH
Confidence 89999999999987322333345799999999999987876 888888763211 111 111111000 0000001
Q ss_pred hhhhccCccccccCCC-CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEe-cCCCCCcc
Q 010538 315 FVKRRQGVEELFEDGT-ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIY-GTYTSEVS 392 (508)
Q Consensus 315 ~~~~~~~~~~~~~~gt-~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~-~~~~~~~~ 392 (508)
+........ ....|. .+....+.....++ .+....++..++++++.+.|.+.+ ++.++ .|.... .
T Consensus 248 ~~~~~r~~~-~~~~g~~~~~~~a~~~~~~l~-----~l~~~~~~~~~~~~~l~~~L~~~~------~v~~v~~p~~~~-~ 314 (412)
T 2cb1_A 248 FPERVRTLG-LSLCGMALSPFNAYLLFQGLE-----TVALRVARMSETARFLAERLQGHP------KVKALRYPGLPE-D 314 (412)
T ss_dssp HHHHHHHHH-TTTTCCCCCHHHHHHHHHHGG-----GHHHHHHHHHHHHHHHHHHHHTCT------TCSEEECTTSTT-C
T ss_pred HHHHHHHHH-HHhcCCCCChHHhHHHHcCCc-----hHHHHHHHHHHHHHHHHHHHHcCC------CeeEEECCCCCC-C
Confidence 110000000 001121 22222222222222 245566677789999999998873 56643 332110 0
Q ss_pred c---------CCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccC---------CCCCchHHHhhcCCChhhhhhhh
Q 010538 393 Y---------HDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTG---------CFCNPGACAKYLGLSHSDLLSNI 454 (508)
Q Consensus 393 ~---------~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g---------~~~~~~~~~~~~~~~~s~~~~~~ 454 (508)
+ ...+++++|.+ + +. ..+.+.|.+.||.+ .+ ..|+.... .. -+++.+.++
T Consensus 315 p~~~~~~~~~~~~~~iv~~~~-~-~~-----~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~-~~---~~~~~~~~~ 382 (412)
T 2cb1_A 315 PAHRNARKYLASGGPILTLDL-G-DL-----ERASRFLGAIRLLK-AANLGDARTLLVHPWTTTH-SR---LKEEARLQA 382 (412)
T ss_dssp TTHHHHHHHCSSSCSEEEEEC-S-SH-----HHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTT-TT---SCHHHHHHT
T ss_pred ccHHHHHHhCCCCceEEEEEe-C-CH-----HHHHHHHHhCCeee-ecccCCCcceeecCccccc-cc---CCHHHHHhc
Confidence 0 02478999999 4 22 34788888999999 87 36665421 00 134566677
Q ss_pred hcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhh
Q 010538 455 EAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFD 497 (508)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~ 497 (508)
|. .++.||+|++.++++++|+.+.++|++
T Consensus 383 g~--------------~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 383 GV--------------TPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp TC--------------CTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred CC--------------CCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 65 268999999999999999999999864
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.6e-27 Score=241.31 Aligned_cols=341 Identities=11% Similarity=-0.010 Sum_probs=232.0
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC---CCCceEEEcCChHH
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS---MKDYKCIFTSGATA 114 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~---~~~~~i~~t~g~t~ 114 (508)
+++|.|+.+.... +++.+.+++.+ .......++.. ....++.+++.+.+++.+|.+ +++ +|++|+|+++
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~-~~~~~~~y~~~-----~g~~~lr~~la~~l~~~~g~~~~~~~~-~i~~t~g~~~ 102 (396)
T 3jtx_A 30 MEAVPLHIGEPKHPTPKVITDALTA-SLHELEKYPLT-----AGLPELRQACANWLKRRYDGLTVDADN-EILPVLGSRE 102 (396)
T ss_dssp CCCEECSCCSCCSCCCHHHHHHHHH-TGGGGGSCCCT-----TCCHHHHHHHHHHHHHHTTTCCCCTTT-SEEEESSHHH
T ss_pred CCeEEeCCcCCCCCCCHHHHHHHHH-HhhhccCCCCC-----CCcHHHHHHHHHHHHHhcCCCCCCCCC-eEEEcCCcHH
Confidence 5688888876544 35666666544 33333222221 112344555566666666753 431 5999999999
Q ss_pred HHHHHHhhcCCCCC-----CeEEEecccccchHHHHHHHHhcCCeEEEEccCCcc-Cccccccccccccccccchhhhhc
Q 010538 115 ALKLVGEAFPWSHQ-----SSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAV-DNDGLSESLVTSTKISLLPIQRRK 188 (508)
Q Consensus 115 al~~~~~~l~~~~g-----~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~-~~~~l~~~~~~~~~~~~d~~~l~~ 188 (508)
|+.+++.++ ..+| ++|+++...|+++. ..++..|.+++.+|.+.++ .+ |+++++
T Consensus 103 al~~~~~~~-~~~g~~~~~d~vl~~~p~~~~~~---~~~~~~g~~~~~v~~~~~g~~~---------------d~~~l~- 162 (396)
T 3jtx_A 103 ALFSFVQTV-LNPVSDGIKPAIVSPNPFYQIYE---GATLLGGGEIHFANCPAPSFNP---------------DWRSIS- 162 (396)
T ss_dssp HHHHHHHHH-CCC---CCCCEEEEEESCCHHHH---HHHHHTTCEEEEEECCTTTCCC---------------CGGGSC-
T ss_pred HHHHHHHHH-hCCCCccCCCEEEEcCCCcHhHH---HHHHHcCCEEEEeecCCCCCcc---------------CHHHHH-
Confidence 999999998 4564 78998876666554 4455679999999985433 22 456666
Q ss_pred CCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC----CCCCCC--
Q 010538 189 GASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT----QPPDLS-- 262 (508)
Q Consensus 189 ~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~----~~~d~~-- 262 (508)
+++ .+++++|++++++||||.++|.+++.++++ +|+++|+++|+|++|+... .++...
T Consensus 163 -~~~------~~~~~~v~l~~p~nptG~~~~~~~l~~i~~---------~~~~~~~~li~De~~~~~~~~~~~~~~~~~~ 226 (396)
T 3jtx_A 163 -EEV------WKRTKLVFVCSPNNPSGSVLDLDGWKEVFD---------LQDKYGFIIASDECYSEIYFDGNKPLGCLQA 226 (396)
T ss_dssp -HHH------HHTEEEEEEESSCTTTCCCCCHHHHHHHHH---------HHHHHCCEEEEECTTTTCCSTTCCCCCHHHH
T ss_pred -Hhh------ccCcEEEEEECCCCCCCCcCCHHHHHHHHH---------HHHHcCCEEEEEccccccccCCCCCchHHhh
Confidence 333 347899999999999999999888555554 3445999999999998532 233221
Q ss_pred ------CCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChh
Q 010538 263 ------KYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFL 334 (508)
Q Consensus 263 ------~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 334 (508)
..+.++++.|++|.++ ++| +|+++.++++++.+.... ....++++..
T Consensus 227 ~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~ 281 (396)
T 3jtx_A 227 AAQLGRSRQKLLMFTSLSKRSN-VPGLRSGFVAGDAELLKNFLLYR------------------------TYHGSAMSIP 281 (396)
T ss_dssp HHHTTCCCTTEEEEEESTTTSS-CGGGCCEEEEECHHHHHHHHHHH------------------------HHHTCCCCHH
T ss_pred hhhcccccCcEEEEeccccccC-CcccceEEEEeCHHHHHHHHHHH------------------------hhcccCCCHH
Confidence 2467899999999887 446 799999888877665431 1123456666
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCH
Q 010538 335 SIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGY 414 (508)
Q Consensus 335 ~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 414 (508)
..+++.++++. ...+++.++++.++++++.+.|++. +.+..+.. +.++++.+++. +.
T Consensus 282 ~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~--------~~~~~~~~--------~~~~~~~~~~~-----~~ 338 (396)
T 3jtx_A 282 VQRASIAAWDD--EQHVIDNRRLYQEKFERVIPILQQV--------FDVKLPDA--------SFYIWLKVPDG-----DD 338 (396)
T ss_dssp HHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHTTT--------SCCCCCSS--------SSEEEEECTTS-----CH
T ss_pred HHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHhc--------CCccCCCe--------eEEEEEECCCC-----CH
Confidence 67776667663 2346788889999999999999774 22333322 67888888652 23
Q ss_pred HHHHHHH-hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHH
Q 010538 415 REVEKLA-SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRC 493 (508)
Q Consensus 415 ~~l~~~L-~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~ 493 (508)
..+.+.| +++||.+.+|..|..... ......+++|||++. |.++++++++
T Consensus 339 ~~~~~~l~~~~gi~v~~g~~~~~~~~---------------------------~~~~~~~~iRis~~~--~~~~i~~~l~ 389 (396)
T 3jtx_A 339 LAFARNLWQKAAIQVLPGRFLARDTE---------------------------QGNPGEGYVRIALVA--DVATCVKAAE 389 (396)
T ss_dssp HHHHHHHHHHHCEECEEGGGGCCCCT---------------------------TCCTTTTEEEEECCS--CHHHHHHHHH
T ss_pred HHHHHHHHHHCCEEEeCChHhCCccc---------------------------ccCCCCCeEEEEEcC--CHHHHHHHHH
Confidence 3466666 678999999987754210 001136899999986 9999999999
Q ss_pred hhhhhh
Q 010538 494 SSFDFV 499 (508)
Q Consensus 494 ~~~~~~ 499 (508)
.|++++
T Consensus 390 ~l~~~l 395 (396)
T 3jtx_A 390 DIVSLY 395 (396)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 988765
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-26 Score=243.16 Aligned_cols=308 Identities=13% Similarity=0.111 Sum_probs=216.7
Q ss_pred HHHHHHHHHHHc----CC-CCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEcc
Q 010538 86 VRAAREQVLDYF----NA-SMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDV 160 (508)
Q Consensus 86 ~~~~r~~la~~~----~~-~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~ 160 (508)
..++|+++++++ |+ +++ +|++|+|+++|+.+++.++ ..+|++|++....|+++. ..++..|++++.+|.
T Consensus 120 ~~~lr~~ia~~~~~~~g~~~~~--~v~~t~G~~~al~~~~~~l-~~~Gd~Vlv~~p~y~~~~---~~~~~~g~~~~~v~~ 193 (448)
T 3aow_A 120 FTPLRETLMKWLGKRYGISQDN--DIMITSGSQQALDLIGRVF-LNPGDIVVVEAPTYLAAL---QAFNFYEPQYIQIPL 193 (448)
T ss_dssp CHHHHHHHHHHHHHHHCCCTTS--EEEEESSHHHHHHHHHHHH-CCTTCEEEEEESCCHHHH---HHHHTTCCEEEEEEE
T ss_pred cHHHHHHHHHHHHHhcCcCChh--hEEEeCcHHHHHHHHHHHH-cCCCCEEEEeCCChHHHH---HHHHHcCCEEEEecc
Confidence 345666777766 98 666 8999999999999999998 678999998886666554 445567999999998
Q ss_pred CCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEE-EEeCCCCCCccccCHHHHHHHHcCCccccccCCC
Q 010538 161 EEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLF-AFPSECNFSGSRFNLDLINIMKKNPERILEISPF 239 (508)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv-~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~ 239 (508)
+.++ + |+++++ ++++......+++++| ++++++||||.++|.+.+.++++ +|
T Consensus 194 ~~~g-~---------------d~~~L~--~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~---------la 246 (448)
T 3aow_A 194 DDEG-M---------------KVEILE--EKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLE---------LA 246 (448)
T ss_dssp ETTE-E---------------CHHHHH--HHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHH---------HH
T ss_pred CCCC-C---------------CHHHHH--HHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHH---------HH
Confidence 7543 3 577777 5542000001368887 57899999999999775555544 34
Q ss_pred CCCCeEEEEeccccCCC----CCCCCCC---CCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecc
Q 010538 240 SKGRWMVLIDAAKGCVT----QPPDLSK---YPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASI 310 (508)
Q Consensus 240 ~~~g~~vivD~a~~~g~----~~~d~~~---~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~ 310 (508)
+++|++||+|++|+... .+.++.. .+.++++.|++|+++ | | +|++++++++++.+......
T Consensus 247 ~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~-~-GlriG~v~~~~~l~~~l~~~~~~-------- 316 (448)
T 3aow_A 247 SEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILA-P-GFRIGWMVGDPGIIRKMEIAKQS-------- 316 (448)
T ss_dssp HHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTC-G-GGCCEEEEECHHHHHHHHHHHHH--------
T ss_pred HHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhcc-c-cccEEEEEeCHHHHHHHHHHHHH--------
Confidence 44999999999998632 2233332 246789999999998 7 6 79999999887766543110
Q ss_pred cchhhhhhccCccccccCCCCChhHHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHHHHHhcccCCCCCc-eEEEecCCC
Q 010538 311 ADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLI-NSLTVPAICRHIASLGMYVRKVLLSLRHENGAD-VCTIYGTYT 388 (508)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~-~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~-~~~~~~~~~ 388 (508)
.. .+.+....+++.++++.. ....++.++++++++++++.+.|++.. + ++++..|..
T Consensus 317 ---------------~~-~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-----~~g~~~~~p~~ 375 (448)
T 3aow_A 317 ---------------TD-LCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFM-----PEGVKWTKPEG 375 (448)
T ss_dssp ---------------HH-SSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CTTCEECCCSB
T ss_pred ---------------hc-CCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEeCCCc
Confidence 11 123444455555555421 012367778888899999999998631 2 477765543
Q ss_pred CCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccC
Q 010538 389 SEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIH 468 (508)
Q Consensus 389 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 468 (508)
+.+++++++.. ++..++.+.|.++||.+.+|..|....
T Consensus 376 --------g~~~~v~~~~~----~~~~~l~~~l~~~gV~v~pg~~f~~~~------------------------------ 413 (448)
T 3aow_A 376 --------GMFIWVTLPDG----IDSKKMLERAIKKGVAYVPGEAFYAHR------------------------------ 413 (448)
T ss_dssp --------SSEEEEECSTT----CCHHHHHHHHHHTTEECEEGGGGSTTC------------------------------
T ss_pred --------cEEEEEEcCCC----CCHHHHHHHHHHCCcEEEcchhhcCCC------------------------------
Confidence 68899998642 344568888888899999987554321
Q ss_pred CCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 469 GKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 469 ~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
...+++|+|++.. |.++++.+++.|.++++-
T Consensus 414 -~~~~~iRls~~~~-~~e~i~~~~~~L~~~l~~ 444 (448)
T 3aow_A 414 -DVKNTMRLNFTYV-DEDKIMEGIKRLAETIKE 444 (448)
T ss_dssp -CCCSEEEEECSSS-CTHHHHHHHHHHHHHHHH
T ss_pred -CCCCEEEEEeCCC-CHHHHHHHHHHHHHHHHH
Confidence 1257899999974 899999999999987753
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=243.69 Aligned_cols=360 Identities=7% Similarity=-0.054 Sum_probs=234.7
Q ss_pred CCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCC--CCCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA--SMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~--~~~~~~i~~t~g~t~a 115 (508)
+++|.|..+... ++++.+.+++.+.+ ... ....|.......++.+++.+.+.+.+|. +++ +|++|+|+++|
T Consensus 57 ~~~i~l~~g~~~~~~~~~v~~a~~~~~-~~~---~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~--~v~~t~G~~~a 130 (447)
T 3b46_A 57 RELINLGQGFFSYSPPQFAIKEAQKAL-DIP---MVNQYSPTRGRPSLINSLIKLYSPIYNTELKAE--NVTVTTGANEG 130 (447)
T ss_dssp SCCEECCCCSCSSCCCHHHHHHHHHHT-TSG---GGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGG--GEEEESHHHHH
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHH-hCc---CCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChh--hEEEeCCHHHH
Confidence 567888776533 24666767665543 220 0011211111223333333333333453 555 79999999999
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccC--ccccccccccccccccchhhhhcCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVD--NDGLSESLVTSTKISLLPIQRRKGASFP 193 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~--~~~l~~~~~~~~~~~~d~~~l~~~~~l~ 193 (508)
+.+++.++ ..+|++|++....|+++.... +..|.+++.+|.+.... ... ........|+++++ +++
T Consensus 131 l~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~---~~~g~~~~~v~~~~~~~~~~~~-----~~~~~~~~d~~~l~--~~l- 198 (447)
T 3b46_A 131 ILSCLMGL-LNAGDEVIVFEPFFDQYIPNI---ELCGGKVVYVPINPPKELDQRN-----TRGEEWTIDFEQFE--KAI- 198 (447)
T ss_dssp HHHHHHHH-CCTTCEEEEEESCCTTHHHHH---HHTTCEEEEEEEECCGGGGTSC-----BCSTTSEECHHHHH--TTC-
T ss_pred HHHHHHHH-cCCCCEEEEeCCCchhHHHHH---HHcCCEEEEEeCCCcccccccc-----ccccCcccCHHHHH--Hhh-
Confidence 99999998 678999999998888766544 45699999998754310 000 00000122788999 655
Q ss_pred CCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC---CCCCCCC-----CC
Q 010538 194 ERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT---QPPDLSK-----YP 265 (508)
Q Consensus 194 ~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~---~~~d~~~-----~~ 265 (508)
.+++++|++++++||||.++|.+.+.++++ +|+++|+++|+|++|+... ....+.. .+
T Consensus 199 -----~~~~~~v~l~~p~nptG~~~~~~~l~~i~~---------l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~ 264 (447)
T 3b46_A 199 -----TSKTKAVIINTPHNPIGKVFTREELTTLGN---------ICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQ 264 (447)
T ss_dssp -----CTTEEEEEEESSCTTTCCCCCHHHHHHHHH---------HHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHT
T ss_pred -----ccCCeEEEEeCCCCCCCcccCHHHHHHHHH---------HHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCC
Confidence 467899999999999999997555555444 3444999999999998522 1223322 36
Q ss_pred CcEEEEeccccccCCCc--ceEEEE-echhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHH
Q 010538 266 VDFVVMSFYKIFGYPTG--LGALIM-RNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHG 342 (508)
Q Consensus 266 ~D~~~~S~~K~~g~P~G--~G~l~~-~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~a 342 (508)
.|+++.|+||+++ ++| +|++++ ++++++.+.... .....+.+....+++.++
T Consensus 265 ~~i~i~S~sK~~~-~~G~riG~~~~~~~~l~~~l~~~~------------------------~~~~~~~~~~~~~a~~~a 319 (447)
T 3b46_A 265 LTLTVGSAGKSFA-ATGWRIGWVLSLNAELLSYAAKAH------------------------TRICFASPSPLQEACANS 319 (447)
T ss_dssp TEEEEEEHHHHTT-CTTSCCEEEECSCHHHHHHHHHHH------------------------HHHTSSCCHHHHHHHHHH
T ss_pred cEEEEecCchhcC-CcchhhEEEEeCCHHHHHHHHHHH------------------------hhccCCCChHHHHHHHHH
Confidence 8999999999998 667 899999 888876654321 011233455556666777
Q ss_pred HHHHH-hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCC-----------
Q 010538 343 FNLIN-SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGS----------- 410 (508)
Q Consensus 343 l~~~~-~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------- 410 (508)
++... +..++.++++++++++++.+.|+++ ++++..+.. +.+++++++.....
T Consensus 320 L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~--------g~~~~~~~~~~~~p~~~~~~~~~~~ 384 (447)
T 3b46_A 320 INDALKIGYFEKMRQEYINKFKIFTSIFDEL-------GLPYTAPEG--------TYFVLVDFSKVKIPEDYPYPEEILN 384 (447)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH-------TCCEECCSB--------SSEEEEECTTCCCCTTCCCCGGGSS
T ss_pred HhCCcchHHHHHHHHHHHHHHHHHHHHHHHC-------CCeecCCCe--------eEEEEEecccccCcccccccccccc
Confidence 77542 2347888999999999999999886 466665443 67888888642100
Q ss_pred ccCHHHHHHHH-hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHH
Q 010538 411 WFGYREVEKLA-SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAK 489 (508)
Q Consensus 411 ~~~~~~l~~~L-~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~ 489 (508)
..+..++.+.| +++||.+.+|..|...... ....+++|+|++. +.++++
T Consensus 385 ~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~----------------------------~~~~~~iRls~~~--~~e~l~ 434 (447)
T 3b46_A 385 KGKDFRISHWLINELGVVAIPPTEFYIKEHE----------------------------KAAENLLRFAVCK--DDAYLE 434 (447)
T ss_dssp SCHHHHHHHHHHHHTCEECBCGGGGSCGGGG----------------------------GGGTTEEEEECCS--CHHHHH
T ss_pred CCCHHHHHHHHHHhCCEEEECchHhCCCCcc----------------------------CCCCCEEEEEEeC--CHHHHH
Confidence 01233566666 4689999998655432100 0015789999984 899999
Q ss_pred HHHHhhhhhhh
Q 010538 490 VNRCSSFDFVN 500 (508)
Q Consensus 490 ~l~~~~~~~~~ 500 (508)
++++.|+++-+
T Consensus 435 ~~~~~l~~~~~ 445 (447)
T 3b46_A 435 NAVERLKLLKD 445 (447)
T ss_dssp HHHHHGGGGGT
T ss_pred HHHHHHHHHHh
Confidence 99999988644
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=6.4e-27 Score=244.49 Aligned_cols=310 Identities=13% Similarity=0.062 Sum_probs=215.5
Q ss_pred HHHHHHHHHHc----C---CCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEc
Q 010538 87 RAAREQVLDYF----N---ASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAID 159 (508)
Q Consensus 87 ~~~r~~la~~~----~---~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~ 159 (508)
.++|+.+++++ | ++++ +|++|+|+++|+.+++.++ ..+|++|++....|+++. ..++..|.+++.+|
T Consensus 88 ~~lr~~la~~l~~~~g~~~~~~~--~v~~t~G~~~al~~~~~~l-~~~gd~Vl~~~p~y~~~~---~~~~~~g~~~~~v~ 161 (425)
T 1vp4_A 88 PVLKQQILKLLERMYGITGLDED--NLIFTVGSQQALDLIGKLF-LDDESYCVLDDPAYLGAI---NAFRQYLANFVVVP 161 (425)
T ss_dssp HHHHHHHHHHHHHHHCCCSCCGG--GEEEEEHHHHHHHHHHHHH-CCTTCEEEEEESCCHHHH---HHHHTTTCEEEEEE
T ss_pred HHHHHHHHHHHHhccCCCCCCcc--cEEEeccHHHHHHHHHHHh-CCCCCEEEEeCCCcHHHH---HHHHHcCCEEEEec
Confidence 45566677666 8 5566 8999999999999999998 578899998876666544 44556799999999
Q ss_pred cCCccCccccccccccccccccchhhhhcCCCCCCCC--CCCCCceEE-EEeCCCCCCccccCHHHHHHHHcCCcccccc
Q 010538 160 VEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERD--PAGDAYNLF-AFPSECNFSGSRFNLDLINIMKKNPERILEI 236 (508)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~--~~~~~t~lv-~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~ 236 (508)
.+.++ + |+++++ +++++.. ...+++++| ++++++||||.++|.+.+.++++
T Consensus 162 ~~~~~-~---------------d~~~l~--~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~-------- 215 (425)
T 1vp4_A 162 LEDDG-M---------------DLNVLE--RKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVE-------- 215 (425)
T ss_dssp EETTE-E---------------CHHHHH--HHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHH--------
T ss_pred cCCCC-C---------------CHHHHH--HHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHH--------
Confidence 86543 3 567776 4442100 001367887 57999999999999765555544
Q ss_pred CCCCCCCeEEEEeccccCCC----CCCCCC---CCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEE
Q 010538 237 SPFSKGRWMVLIDAAKGCVT----QPPDLS---KYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVA 307 (508)
Q Consensus 237 ~~~~~~g~~vivD~a~~~g~----~~~d~~---~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~ 307 (508)
+|+++|+++|+|++|+... .+.++. ..+.++++.|++|+++ | | +|++++++++++.+.....
T Consensus 216 -~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~-G~r~G~~~~~~~~~~~l~~~~~------ 286 (425)
T 1vp4_A 216 -IAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-P-GLRIGMVAGSKEFIRKIVQAKQ------ 286 (425)
T ss_dssp -HHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-G-GGCEEEEECCHHHHHHHHHHHH------
T ss_pred -HHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccc-c-ccceEEEeeCHHHHHHHHHHhh------
Confidence 3444999999999998632 223332 2256799999999999 7 6 7999999888776654311
Q ss_pred ecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecC
Q 010538 308 ASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLI-NSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGT 386 (508)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~-~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~ 386 (508)
. ...+.+....+++.++++.. .+..++.+++++.++++++.+.|++... ..+++++..+
T Consensus 287 -----------------~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~g~~~~~~ 346 (425)
T 1vp4_A 287 -----------------S-ADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFS--DIPGVKWVKS 346 (425)
T ss_dssp -----------------H-HHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHST--TSTTCEECCC
T ss_pred -----------------h-hcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCceEEecC
Confidence 0 11233555566666666542 0123678888899999999999987410 0014777655
Q ss_pred CCCCcccCCCCceEEEEeeC-CCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCcc
Q 010538 387 YTSEVSYHDTGSMVSFNLKR-PDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDND 465 (508)
Q Consensus 387 ~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 465 (508)
.. ++++++.++. .+.. ++.+.|.++||.+++|..|....
T Consensus 347 ~~--------g~~~~~~~~~~~~~~-----~l~~~l~~~gi~v~~g~~f~~~~--------------------------- 386 (425)
T 1vp4_A 347 EG--------GLFIWLTLPEGFDTW-----EMFEYAKRKKVFYVPGRVFKVYD--------------------------- 386 (425)
T ss_dssp SB--------SSEEEEECCTTCCTT-----TTHHHHHHHTEECEEGGGGCTTC---------------------------
T ss_pred Cc--------cEEEEEEcCCCCCHH-----HHHHHHHHCCCEEECchhhcCCC---------------------------
Confidence 43 6789999874 2333 36777777799999987554311
Q ss_pred ccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 466 IIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 466 ~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
...+++|||++.. |.+|++++++.|+++++.+
T Consensus 387 ----~~~~~iRis~~~~-~~e~i~~~l~~l~~~l~~~ 418 (425)
T 1vp4_A 387 ----EPSPSMRLSFCLP-PDEKIVEGIKRLREVVLEY 418 (425)
T ss_dssp ----CCCSEEEEECSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHH
Confidence 1257899999975 9999999999999887654
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-27 Score=243.73 Aligned_cols=350 Identities=10% Similarity=0.001 Sum_probs=233.0
Q ss_pred CCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHH
Q 010538 40 GTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLV 119 (508)
Q Consensus 40 ~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~ 119 (508)
...+.|+.+++...+.+.+++. . +.++...+..+.......+++++++++++|++ + .++ ++++++|++++
T Consensus 26 ~~~~~d~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~--~i~-~~sG~~a~~~~ 95 (398)
T 2rfv_A 26 ALSTPIFQTSTFVFDSAEQGAA-R-----FALEESGYIYTRLGNPTTDALEKKLAVLERGE-A--GLA-TASGISAITTT 95 (398)
T ss_dssp CSSCCCCCCSBCCCSSHHHHHH-H-----C-----CCSBTTTCCHHHHHHHHHHHHHHTCS-E--EEE-ESSHHHHHHHH
T ss_pred CcCCCCcCCCccccCCHHHHHH-h-----hcCCCCCCceeCCCChHHHHHHHHHHHHhCCC-c--EEE-ECCHHHHHHHH
Confidence 5778999998888877766543 2 12232233333334567889999999999986 3 444 55566999999
Q ss_pred HhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCC
Q 010538 120 GEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPA 198 (508)
Q Consensus 120 ~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~ 198 (508)
+.++ .++|++|+++...|+++....+ .++..|.+++.+|.+ |+++++ +++
T Consensus 96 l~~~-~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--------------------d~~~l~--~~i------ 146 (398)
T 2rfv_A 96 LLTL-CQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAA--------------------KPEEIR--AAM------ 146 (398)
T ss_dssp HHHH-CCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT--------------------SHHHHH--HHC------
T ss_pred HHHH-hCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCC--------------------CHHHHH--Hhc------
Confidence 9998 6789999999999988876543 346679999999874 256666 444
Q ss_pred CCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEecccccc
Q 010538 199 GDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFG 278 (508)
Q Consensus 199 ~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g 278 (508)
.+++++|++++++||||.+.|+++|.++|++ +|+++|+|++|+.+..+..+ ..++|+++.|+||+++
T Consensus 147 ~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~li~De~~~~~~~~~~~-~~~~di~~~s~sK~~~ 213 (398)
T 2rfv_A 147 RPETKVVYIETPANPTLSLVDIETVAGIAHQ------------QGALLVVDNTFMSPYCQQPL-QLGADIVVHSVTKYIN 213 (398)
T ss_dssp CTTEEEEEEESSBTTTTBCCCHHHHHHHHHH------------TTCEEEEECTTTCTTTCCGG-GGTCSEEEEETTTTTT
T ss_pred CCCCeEEEEECCCCCCCcccCHHHHHHHHHH------------cCCEEEEECCCcccccCCch-hhCCcEEEEeCccccc
Confidence 4578999999999999999999999999998 99999999999987654322 4579999999999998
Q ss_pred CCCc--ceEEEEechhHh-hhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHH
Q 010538 279 YPTG--LGALIMRNDAAK-LLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAIC 355 (508)
Q Consensus 279 ~P~G--~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~ 355 (508)
+|.+ .|+++++++.++ .+.+...+ +..++.+....+++.++++.+ ....
T Consensus 214 ~~g~~~~G~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~l~~~-----~~~~ 265 (398)
T 2rfv_A 214 GHGDVIGGIIVGKQEFIDQARFVGLKD-----------------------ITGGCMSPFNAWLTLRGVKTL-----GIRM 265 (398)
T ss_dssp CSSCCCCEEEEECHHHHHHHHHTHHHH-----------------------TTCCCCCHHHHHHHHHHHTTH-----HHHH
T ss_pred CCCCceEEEEEECHHHHHHHHHHHHHh-----------------------CCCCCCCHHHHHHHHhhhhhH-----HHHH
Confidence 7866 499999988765 44433111 112455555555555565532 3334
Q ss_pred HHHHHHHHHHHHHHhcccC--------CCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHh---hC
Q 010538 356 RHIASLGMYVRKVLLSLRH--------ENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLAS---LS 424 (508)
Q Consensus 356 ~~~~~l~~~l~~~L~~l~~--------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~---~~ 424 (508)
++..+..+++.+.|++.+. ....|+++++.+.. ...+++++|.+++.. .+..+.++ ..
T Consensus 266 ~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~-----~~~g~~~~~~~~~~~------~~~~~l~~~~~~~ 334 (398)
T 2rfv_A 266 ERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQM-----SLPGGIISFEIAGGL------EAGRRMINSVELC 334 (398)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHC-----SSCCSEEEEEETTHH------HHHHHHHTTCSSS
T ss_pred HHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhC-----CCCceEEEEEEcCCH------HHHHHHHHhCCcc
Confidence 4455666666677765420 00112333333211 013899999886420 12333443 34
Q ss_pred CCeeccCCCCC------chHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 425 GIQLRTGCFCN------PGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 425 gI~v~~g~~~~------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
|+.++.|..++ .... . .+ +++.+.++|. .++.+|+|++..++++++++++++++++
T Consensus 335 ~i~~~~G~~~~li~~~~~~~~-~--~~-~~~~~~~~g~--------------~~~~iRls~~~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 335 LLAVSLGDTETLIQHPASMTH-S--PV-APEERLKAGI--------------TDGLIRLSVGLEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp EECSCCSSSSCEEECHHHHTS-S--SS-CHHHHHHTTC--------------CTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred eeccCCCCcceeeeccccccc-c--cC-CHHHHHhcCC--------------CCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence 78888885432 1110 0 00 1233334433 2689999999999999999999998753
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-26 Score=229.96 Aligned_cols=307 Identities=15% Similarity=0.166 Sum_probs=222.3
Q ss_pred CCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC---CCCCCceEEEcCChHH
Q 010538 39 NGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN---ASMKDYKCIFTSGATA 114 (508)
Q Consensus 39 ~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~---~~~~~~~i~~t~g~t~ 114 (508)
++++||+++... ++++.+.+++.+.+... ....|.. . ...++|+.++++++ ++++ +|++|+|+++
T Consensus 19 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~~~~y~~----~-~~~~lr~~la~~~~~~~~~~~--~v~~~~G~~~ 87 (335)
T 1uu1_A 19 RDKTYLALNENPFPFPEDLVDEVFRRLNSD----ALRIYYD----S-PDEELIEKILSYLDTDFLSKN--NVSVGNGADE 87 (335)
T ss_dssp CCSEEESSCCCSSCCCHHHHHHHHHTCCGG----GGGSCCC----S-SCHHHHHHHHHHHTCSSCCGG--GEEEESSHHH
T ss_pred CcceECCCCCCCCCCCHHHHHHHHHHhhhh----hhhcCCC----C-chHHHHHHHHHHcCCCCCCHH--HEEEcCChHH
Confidence 468999999874 45788887765533111 0111111 1 15678999999999 8877 8999999999
Q ss_pred HHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCC
Q 010538 115 ALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 115 al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
++++++.++ |++|+++ ..|+++. ..++..|.+++.+|.+++..+ | ++ .+
T Consensus 88 al~~~~~~~----gd~Vl~~-p~y~~~~---~~~~~~g~~~~~v~~~~~~~~---------------d---~~---~l-- 136 (335)
T 1uu1_A 88 IIYVMMLMF----DRSVFFP-PTYSCYR---IFAKAVGAKFLEVPLTKDLRI---------------P---EV---NV-- 136 (335)
T ss_dssp HHHHHHHHS----SEEEECS-SSCHHHH---HHHHHHTCEEEECCCCTTSCC---------------C---CC---CC--
T ss_pred HHHHHHHHh----CCcEEEC-CCcHHHH---HHHHHcCCeEEEeccCCCCCC---------------C---HH---Hc--
Confidence 999999998 7888877 6666554 445556999999988644333 1 12 11
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC-CC-CCCC-CCCCCCcEEEE
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC-VT-QPPD-LSKYPVDFVVM 271 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~-g~-~~~d-~~~~~~D~~~~ 271 (508)
+++++|++++++||||.++|.+++.++++. .| ++|+|++|+. .. ..++ +...+.++++.
T Consensus 137 -----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~------------~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~~ 198 (335)
T 1uu1_A 137 -----GEGDVVFIPNPNNPTGHVFEREEIERILKT------------GA-FVALDEAYYEFHGESYVDFLKKYENLAVIR 198 (335)
T ss_dssp -----CTTEEEEEESSCTTTCCCCCHHHHHHHHHT------------TC-EEEEECTTHHHHCCCCGGGGGTCSSEEEEE
T ss_pred -----CCCCEEEEeCCCCCCCCCCCHHHHHHHHHh------------CC-EEEEECcchhhcchhHHHHhhhCCCEEEEe
Confidence 467999999999999999999999999996 48 8999999973 11 1122 23345789999
Q ss_pred eccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhc
Q 010538 272 SFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSL 349 (508)
Q Consensus 272 S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~ 349 (508)
|+||++| ++| +|++++++++++.+.+.. ...+.+....+++.++++.. .
T Consensus 199 s~sK~~g-~~G~r~G~~~~~~~~~~~l~~~~--------------------------~~~~~~~~~~~~~~~~l~~~--~ 249 (335)
T 1uu1_A 199 TFSKAFS-LAAQRVGYVVASEKFIDAYNRVR--------------------------LPFNVSYVSQMFAKVALDHR--E 249 (335)
T ss_dssp ESTTTTT-CGGGCCEEEEECHHHHHHHHHHS--------------------------CTTCSCHHHHHHHHHHHHTH--H
T ss_pred cchhhcC-CcccCeEEEEeCHHHHHHHHHhc--------------------------CCCCcCHHHHHHHHHHhCCH--H
Confidence 9999998 667 799999988876665431 01255666666666676642 2
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeec
Q 010538 350 TVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLR 429 (508)
Q Consensus 350 g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~ 429 (508)
.++++.+++.++++++.+.|+++ ++++. +.. ++++++.+++ .+..++.+.|.++||.++
T Consensus 250 ~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~-~~~--------~~~~~~~~~~-----~~~~~~~~~l~~~gi~v~ 308 (335)
T 1uu1_A 250 IFEERTKFIVEERERMKSALREM-------GYRIT-DSR--------GNFVFVFMEK-----EEKERLLEHLRTKNVAVR 308 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------TCCBC-CCC--------SSEEEEECCT-----HHHHHHHHHHHHHTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC-------CcEEc-CCC--------CeEEEEECCC-----CCHHHHHHHHHHCCEEEE
Confidence 36788899999999999999876 34443 222 6788888754 123457788888999998
Q ss_pred cCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 430 TGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 430 ~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
++ .+++|+|++ +.+|+++++++|+++
T Consensus 309 ~~----------------------------------------~~~iRis~~---~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 309 SF----------------------------------------REGVRITIG---KREENDMILRELEVF 334 (335)
T ss_dssp EE----------------------------------------TTEEEEECC---CHHHHHHHHHHHHCC
T ss_pred EC----------------------------------------CCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 72 468999996 678999999998765
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-26 Score=233.83 Aligned_cols=344 Identities=14% Similarity=0.056 Sum_probs=232.6
Q ss_pred chHHHHHHhhccCC--CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCC--
Q 010538 25 SIDQIRATEFKRLE--NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA-- 99 (508)
Q Consensus 25 ~~~~~r~~~f~~~~--~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~-- 99 (508)
.+..++. .+..+. .+++.|+.+.... +|+.+.+++.+ ........+. .....++.+++.+.+++.+|+
T Consensus 8 ~~~~~~~-~~~~~~~~g~~i~l~~~~~~~~~~~~v~~a~~~-~~~~~~~y~~-----~~g~~~lr~~la~~l~~~~g~~~ 80 (376)
T 3ezs_A 8 PFERLRA-LLKEITPKKRGLDLGIGEPQFETPKFIQDALKN-HTHSLNIYPK-----SAFEESLRAAQRGFFKRRFKIEL 80 (376)
T ss_dssp HHHHHHH-HHTTCCCSSCCCBCSSCCCCSCCCHHHHHHHHT-TGGGGGSCCC-----TTCCHHHHHHHHHHHHHHHSCCC
T ss_pred hHHHHHH-HHHhhhccCCEEEeCCCCCCCCCCHHHHHHHHH-hhhhcCCCCC-----CCCCHHHHHHHHHHHHHHhCCCC
Confidence 3444554 443331 3678888776544 45666666544 3222222221 111233444455555555587
Q ss_pred CCCCceEEEcCChHHHHHHHHhhcCCCC--CCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCcccccccccccc
Q 010538 100 SMKDYKCIFTSGATAALKLVGEAFPWSH--QSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTST 177 (508)
Q Consensus 100 ~~~~~~i~~t~g~t~al~~~~~~l~~~~--g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~ 177 (508)
+++ +|++|+|+|+++++++.++ .++ |++|++....|+++. ..++..|.+++.+|.+.+..++
T Consensus 81 ~~~--~i~~t~g~~~al~~~~~~~-~~~~~gd~vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~~~~---------- 144 (376)
T 3ezs_A 81 KEN--ELISTLGSREVLFNFPSFV-LFDYQNPTIAYPNPFYQIYE---GAAKFIKAKSLLMPLTKENDFT---------- 144 (376)
T ss_dssp CGG--GEEEESSSHHHHHHHHHHH-TTTCSSCEEEEEESCCTHHH---HHHHHTTCEEEEEECCGGGTSC----------
T ss_pred CHH--HEEECcCcHHHHHHHHHHH-cCCCCCCEEEEecCCcHhHH---HHHHHcCCEEEEcccCCCCCcc----------
Confidence 666 8999999999999999998 577 899998887666554 4455679999999987654331
Q ss_pred ccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC
Q 010538 178 KISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ 257 (508)
Q Consensus 178 ~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~ 257 (508)
+ +++ +++ .+++++|++++++||||.++|.+++.++++ +|+++|+++|+|++|+....
T Consensus 145 -----~-~l~--~~~------~~~~~~v~~~~p~nptG~~~~~~~l~~i~~---------~~~~~~~~li~De~~~~~~~ 201 (376)
T 3ezs_A 145 -----P-SLN--EKE------LQEVDLVILNSPNNPTGRTLSLEELISWVK---------LALKHDFILINDECYSEIYE 201 (376)
T ss_dssp -----C-CCC--HHH------HHHCSEEEECSSCTTTCCCCCHHHHHHHHH---------HHHHHTCEEEEECTTTTCBS
T ss_pred -----h-hHH--hhh------ccCCCEEEEcCCCCCcCCCCCHHHHHHHHH---------HHHHcCcEEEEEccchhhcc
Confidence 2 223 221 246799999999999999999777777655 44459999999999986322
Q ss_pred ---CCCCC---------CCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCcc
Q 010538 258 ---PPDLS---------KYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 258 ---~~d~~---------~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
+.++. ..+.++++.|+||++| ++| +|+++.++++++.+.....
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~~~~~~~~~~~~~---------------------- 258 (376)
T 3ezs_A 202 NTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSS-APGLRSGFIAGDSRLLEKYKAFRA---------------------- 258 (376)
T ss_dssp SSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTT-CGGGCCEEEEECHHHHHHHHHHHT----------------------
T ss_pred CCCCCCHHHccccccccccCcEEEEecchhccC-CccceeEEEeeCHHHHHHHHHHHh----------------------
Confidence 33321 3567899999999997 446 7999999888776654311
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEE
Q 010538 324 ELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFN 403 (508)
Q Consensus 324 ~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 403 (508)
...++.+....+++.++++. ...++++++++.++++++.+.|+. +. .+. .+.++++.
T Consensus 259 --~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~---------~~--~~~--------~~~~~~~~ 315 (376)
T 3ezs_A 259 --YLGYTSANAIQKASEAAWLD--DRHAEFFRNIYANNLKLARKIFKN---------TL--IYP--------YSFYVYLP 315 (376)
T ss_dssp --TTCCCCCHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHSTT---------CC--CCS--------BSSEEEEE
T ss_pred --hhcCCCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHhcC---------CC--CCC--------cceEEEEE
Confidence 11235566666666666664 223678888888889998888861 22 222 27888888
Q ss_pred eeCCCCCccCHHHHHHHHhh-CCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC
Q 010538 404 LKRPDGSWFGYREVEKLASL-SGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM 482 (508)
Q Consensus 404 ~~~~~~~~~~~~~l~~~L~~-~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 482 (508)
++ + ..++.+.|.+ +||.+++|..|.... ...+++|||++.
T Consensus 316 ~~--~-----~~~~~~~l~~~~gi~v~~g~~~~~~~-------------------------------~~~~~iRis~~~- 356 (376)
T 3ezs_A 316 VQ--N-----GENFAKTLYQNEGIITLPALYLGRNR-------------------------------IGADYVRLALVY- 356 (376)
T ss_dssp CS--C-----HHHHHHHHHHHHCCBCEEGGGGCSTT-------------------------------TTTTEEEEECCS-
T ss_pred CC--C-----HHHHHHHHHHhCCEEEeCcHHhCCCC-------------------------------CCCCeEEEEEcC-
Confidence 86 1 2347777766 899999988765321 126899999984
Q ss_pred CCHHHHHHHHHhhhhhhh
Q 010538 483 STFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 483 ~t~eev~~l~~~~~~~~~ 500 (508)
|.+|++++++.|+++++
T Consensus 357 -~~~~i~~~l~~l~~~l~ 373 (376)
T 3ezs_A 357 -DTPLLEKPLEIIETYRE 373 (376)
T ss_dssp -CHHHHHHHHHHHHHHHC
T ss_pred -CHHHHHHHHHHHHHHHH
Confidence 99999999999998765
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.5e-27 Score=246.41 Aligned_cols=285 Identities=16% Similarity=0.146 Sum_probs=219.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEcc--C
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDV--E 161 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~--~ 161 (508)
...+++++++|+ +|++ + ++++|+|+|+|+.+++.++ .++|++|+++...|+++...+.. .|++++.++. +
T Consensus 57 ~~~~~~~~~la~-~g~~-~--~v~~~~G~t~a~~~~~~a~-~~~gd~Vlv~~~~h~s~~~~~~~---~G~~~~~v~~~~~ 128 (446)
T 2x3l_A 57 EVILKSMKQVEK-HSDY-D--GYFLVNGTTSGILSVIQSF-SQKKGDILMARNVHKSVLHALDI---SQQEGHFIETHQS 128 (446)
T ss_dssp SHHHHHHHHHCS-CTTE-E--EEEESSHHHHHHHHHHHTT-TTSSSCEEECTTCCHHHHHHHHH---HTCCEEECEEEEC
T ss_pred hHHHHHHHHHHh-cCCC-c--eEEEeCCHHHHHHHHHHHh-cCCCCEEEEecCccHHHHHHHHH---cCCeEEEEeCeec
Confidence 457889999999 9987 4 7999999999999999998 68899999999999988766554 4899999887 4
Q ss_pred Cc----cCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccC
Q 010538 162 EA----VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEIS 237 (508)
Q Consensus 162 ~~----~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~ 237 (508)
.+ ..+ |++++. ++++++|++++ .|++|.+.|+++|.++|++
T Consensus 129 ~~~~~~~~~---------------d~~~l~-----------~~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~-------- 173 (446)
T 2x3l_A 129 PLTNHYNKV---------------NLSRLN-----------NDGHKLVVLTY-PNYYGETFNVEEVIKSLHQ-------- 173 (446)
T ss_dssp TTTSSEEEE---------------EC------------------CCEEEEES-SCTTSCCCCHHHHHHHHHH--------
T ss_pred cccCcCCCC---------------CHHHHc-----------CCCceEEEEEC-CCCCeEecCHHHHHHHHHh--------
Confidence 32 122 223222 45789999999 6779999999999999998
Q ss_pred CCCCCCeEEEEeccccCCCC-----CCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccc
Q 010538 238 PFSKGRWMVLIDAAKGCVTQ-----PPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIAD 312 (508)
Q Consensus 238 ~~~~~g~~vivD~a~~~g~~-----~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~ 312 (508)
+|+++++|++|+. .. +.+....++|+++.|+||++++|.|+|+++++++.++ +.+...+
T Consensus 174 ----~~~~livDea~~~-~~~f~~~~~~~~~~g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~-~~~~~~~---------- 237 (446)
T 2x3l_A 174 ----LNIPVLIDEAHGA-HFGLQGFPDSTLNYQADYVVQSFHKTLPALTMGSVLYIHKNAPY-RENIIEY---------- 237 (446)
T ss_dssp ----TTCCEEEECTTCT-TTTSTTSCCCGGGGTCSEEEECHHHHSSSCTTCEEEEEETTCTT-HHHHHHH----------
T ss_pred ----cCCeEEEcchhhh-hhccCCCCCChHHcCCCEEEECCccccccccccEEEEEcCCcCC-HHHHHHH----------
Confidence 9999999999986 22 5565566789999999996665888999999988654 2222100
Q ss_pred hhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcc
Q 010538 313 IDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVS 392 (508)
Q Consensus 313 ~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~ 392 (508)
...+..++++...++++.++++++...|.+++.++..++++++++. . ++++.+..
T Consensus 238 ----------~~~~~~~s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l~~~l~~~--g---------~~~~~~~~---- 292 (446)
T 2x3l_A 238 ----------LSYFQTSSPSYLIMASLESAAQFYKTYDSTLFFAKRAQLIECLENK--G---------FEMLQVDD---- 292 (446)
T ss_dssp ----------HHHHSCSSCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--T---------CEEEECSS----
T ss_pred ----------HHHHcCCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHc--C---------CEECcCCC----
Confidence 1234567888888999999999998888777889999999998877 2 45555432
Q ss_pred cCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeec-cCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCC
Q 010538 393 YHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLR-TGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKP 471 (508)
Q Consensus 393 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~-~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 471 (508)
+..+++.+++ .+..++.+.|.++||.++ +|
T Consensus 293 ----~~~l~i~~~~-----~~~~~l~~~L~~~GI~v~~~g---------------------------------------- 323 (446)
T 2x3l_A 293 ----PLKLLIKYEG-----FTGHDIQNWFMNAHIYLELAD---------------------------------------- 323 (446)
T ss_dssp ----TTEEEEECTT-----SCHHHHHHHHHHTTEEESEEC----------------------------------------
T ss_pred ----CeEEEEEeCC-----cCHHHHHHHHHHCCCEEEecC----------------------------------------
Confidence 3467888763 334568889988899987 42
Q ss_pred CceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 472 TGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 472 ~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
.+.+|++++.++|.+|+ +++++|+++++..
T Consensus 324 ~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~ 353 (446)
T 2x3l_A 324 DYQALAILPLWHHDDTY-LFDSLLRKIEDMI 353 (446)
T ss_dssp SSCEEEECCCCCTTCCC-CHHHHHHHHHTCC
T ss_pred CCEEEEEeecCCCHHHH-HHHHHHHHHHHhh
Confidence 35799999999999999 9999999887543
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-26 Score=236.39 Aligned_cols=345 Identities=13% Similarity=0.042 Sum_probs=229.4
Q ss_pred CCeeeeCCCCCC---CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc----C--CCCCCceEEEcC
Q 010538 40 GTVYLDHAGATL---YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF----N--ASMKDYKCIFTS 110 (508)
Q Consensus 40 ~~iyld~~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~--~~~~~~~i~~t~ 110 (508)
+.+.|..+.... +++.+.+++.+.+ ..... ... |... ....++++.+++++ | ++++ +|++|+
T Consensus 35 ~~idl~~g~~~~~~~~~~~v~~a~~~~~-~~~~~-~~~-y~~~----~~~~~l~~~la~~~~~~~g~~~~~~--~v~~t~ 105 (407)
T 2zc0_A 35 KLISLAAGDPDPELIPRAVLGEIAKEVL-EKEPK-SVM-YTPA----NGIPELREELAAFLKKYDHLEVSPE--NIVITI 105 (407)
T ss_dssp CCEECCSCCCCTTTSCHHHHHHHHHHHH-HHCGG-GGS-CCCT----TCCHHHHHHHHHHHHHHSCCCCCGG--GEEEES
T ss_pred ceEeCCCCCCCchhCCHHHHHHHHHHHH-hhccc-ccc-CCCC----CCCHHHHHHHHHHHHHhcCCCCCcc--eEEEec
Confidence 678887654322 3455555554433 22100 001 1111 11345666666666 8 4566 899999
Q ss_pred ChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCC
Q 010538 111 GATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGA 190 (508)
Q Consensus 111 g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~ 190 (508)
|+|+|+.+++.++ ..+|++|++....|+++ ...++..|++++.+|.+.++ + |+++++ +
T Consensus 106 g~t~a~~~~~~~~-~~~gd~vl~~~p~~~~~---~~~~~~~g~~~~~v~~~~~~-~---------------d~~~l~--~ 163 (407)
T 2zc0_A 106 GGTGALDLLGRVL-IDPGDVVITENPSYINT---LLAFEQLGAKIEGVPVDNDG-M---------------RVDLLE--E 163 (407)
T ss_dssp HHHHHHHHHHHHH-CCTTCEEEEEESCCHHH---HHHHHTTTCEEEEEEEETTE-E---------------CHHHHH--H
T ss_pred CHHHHHHHHHHHh-cCCCCEEEEeCCChHHH---HHHHHHcCCEEEEcccCCCC-C---------------CHHHHH--H
Confidence 9999999999998 67889999887666554 44556679999999986543 3 577777 5
Q ss_pred CCCCCCCCCCCceEE-EEeCCCCCCccccCHH---HHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC----CCCCC
Q 010538 191 SFPERDPAGDAYNLF-AFPSECNFSGSRFNLD---LINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ----PPDLS 262 (508)
Q Consensus 191 ~l~~~~~~~~~t~lv-~~~~~~n~tG~~~~i~---~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~----~~d~~ 262 (508)
++++.....+++++| ++++++||||.++|.+ +|.++|++ +|+++|+|++|+.+.. ..++.
T Consensus 164 ~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~------------~~~~li~De~~~~~~~~~~~~~~~~ 231 (407)
T 2zc0_A 164 KIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASK------------YDLLIIEDTAYNFMRYEGGDIVPLK 231 (407)
T ss_dssp HHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHH------------HTCEEEEECTTTTSBSSCSSCCCGG
T ss_pred HHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHH------------cCCEEEEECCCcccccCCCCCCChh
Confidence 542000001367887 5789999999999998 56666665 9999999999986432 23333
Q ss_pred CC---CCcEEEEeccccccCCC-cceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHH
Q 010538 263 KY---PVDFVVMSFYKIFGYPT-GLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIAS 338 (508)
Q Consensus 263 ~~---~~D~~~~S~~K~~g~P~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~ 338 (508)
.. +.++++.|+||+++ |+ .+|++++++++++.+.+....+ . .+.+.....+
T Consensus 232 ~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~~~~~~~~~~~~~~-----------------------~-~~~~~~~~~~ 286 (407)
T 2zc0_A 232 ALDNEGRVIVAGTLSKVLG-TGFRIGWIIAEGEILKKVLMQKQPI-----------------------D-FCAPAISQYI 286 (407)
T ss_dssp GGCSSCCEEEEEESTTTTC-TTSCCEEEECCHHHHHHHHHHHTTT-----------------------T-SSSCHHHHHH
T ss_pred hcCCCCCEEEEcccccccC-CCcceEEEecCHHHHHHHHHHHHhh-----------------------c-CCCCHHHHHH
Confidence 22 45688999999999 73 2899999988877665431111 1 1123444555
Q ss_pred HHHHHHHH-Hh-cChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHH
Q 010538 339 IRHGFNLI-NS-LTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYRE 416 (508)
Q Consensus 339 l~~al~~~-~~-~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 416 (508)
+.++++.. .+ ..++.+++++.++++++.+.|++.. ++++++.+.. +.+++++++.. ++..+
T Consensus 287 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-----~~~~~~~~~~--------~~~~~~~~~~~----~~~~~ 349 (407)
T 2zc0_A 287 ALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHL-----PNAEFTKPIA--------GMFVMFFLPEG----ADGIS 349 (407)
T ss_dssp HHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHC-----TTSCBCCCSB--------SSEEEEECSTT----CCHHH
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEecCCC--------cEEEEEEcCCC----CCHHH
Confidence 55555532 11 3577888999999999999997731 2455554432 67888988642 34456
Q ss_pred HHHHHhhC-CCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhh
Q 010538 417 VEKLASLS-GIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSS 495 (508)
Q Consensus 417 l~~~L~~~-gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~ 495 (508)
+.+.|.++ ||.+++|..|..+. ...+++|+|++.. |.+|++++++.|
T Consensus 350 l~~~l~~~~gi~v~~g~~~~~~~-------------------------------~~~~~iRis~~~~-~~~~i~~~~~~l 397 (407)
T 2zc0_A 350 FANELMEREGVVVVPGKPFYTDE-------------------------------SGKNAIRLNFSRP-SKEEIPIGIKKL 397 (407)
T ss_dssp HHHHHHHHTCEECBCSGGGCSSS-------------------------------CCTTEEEEECSSS-CTTHHHHHHHHH
T ss_pred HHHHHHHhCCeEEECchhccCCC-------------------------------CCCCeEEEEeCCC-CHHHHHHHHHHH
Confidence 88888777 99999987654321 0257899999987 899999999999
Q ss_pred hhhhhh
Q 010538 496 FDFVNF 501 (508)
Q Consensus 496 ~~~~~~ 501 (508)
+++++-
T Consensus 398 ~~~l~~ 403 (407)
T 2zc0_A 398 AKLYKE 403 (407)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987754
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-26 Score=237.62 Aligned_cols=315 Identities=10% Similarity=0.038 Sum_probs=211.9
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHH-HHHHhcCCeEEEEccC
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIR-EYALSQGAAAFAIDVE 161 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~-~~~~~~G~~v~~v~~~ 161 (508)
....+++++.+|+++|++ ++++++|+++|+++++.++ .++|++|+++..+|+++...+ ..++..|+++..++.+
T Consensus 81 ~p~~~~le~~lA~l~g~~----~~i~~ssGt~Ai~~al~~l-~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~ 155 (415)
T 2fq6_A 81 TLTHFSLQQAMCELEGGA----GCVLFPCGAAAVANSILAF-IEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL 155 (415)
T ss_dssp CHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHTT-CCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTT
T ss_pred CchHHHHHHHHHHHhCCC----eEEEeCCHHHHHHHHHHHH-hCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECCC
Confidence 455788999999999985 3455678899999999998 678999999999998877654 3456679999999764
Q ss_pred CccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCC
Q 010538 162 EAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK 241 (508)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~ 241 (508)
|+++++ ++| +++|++|++++++||+|.+.|+++|.++|++ . .
T Consensus 156 --------------------d~~~le--~ai------~~~tklV~~e~~~NptG~v~dl~~I~~la~~--------~--~ 197 (415)
T 2fq6_A 156 --------------------IGADIV--KHL------QPNTKIVFLESPGSITMEVHDVPAIVAAVRS--------V--V 197 (415)
T ss_dssp --------------------CGGGGG--GGC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHH--------H--C
T ss_pred --------------------CHHHHH--Hhh------ccCCcEEEEECCCCCCCEeecHHHHHHHHHh--------h--c
Confidence 255667 444 4679999999999999999999999999983 0 1
Q ss_pred CCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhc
Q 010538 242 GRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRR 319 (508)
Q Consensus 242 ~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~ 319 (508)
+|+++++|++|+.+.....+ .+++|+++.|+||+++++.+ .|+++.+++.++.+....
T Consensus 198 ~g~~livD~a~a~~~~~~p~-~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~------------------- 257 (415)
T 2fq6_A 198 PDAIIMIDNTWAAGVLFKAL-DFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENA------------------- 257 (415)
T ss_dssp TTCEEEEECTTTTTTSSCGG-GGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHH-------------------
T ss_pred CCCEEEEECCCcccccCCcc-ccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHH-------------------
Confidence 69999999999865322222 35799999999999994433 699998887765554321
Q ss_pred cCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEE-EecCCCCCccc-----
Q 010538 320 QGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCT-IYGTYTSEVSY----- 393 (508)
Q Consensus 320 ~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~-~~~~~~~~~~~----- 393 (508)
....++.+....+.+..+++.+ ....++..+.++.+.+.|++.+ .++ +.-|.-.. .+
T Consensus 258 -----~~~G~~~~~~~a~~~~~~l~~l-----~~r~~~~~~n~~~l~~~L~~~~------~v~~v~~p~l~~-~~~~~~~ 320 (415)
T 2fq6_A 258 -----YLMGQMVDADTAYITSRGLRTL-----GVRLRQHHESSLKVAEWLAEHP------QVARVNHPALPG-SKGHEFW 320 (415)
T ss_dssp -----HHTTCCCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHTCT------TEEEEECTTSTT-STTHHHH
T ss_pred -----HhcCCCCCHHHHHHHHhhhhHH-----HHHHHHHHHHHHHHHHHHHcCC------CeeEEECCCCCC-CccHHHH
Confidence 0011222323233333444443 3445555667777777787753 343 22221100 00
Q ss_pred ----CCCCceEEEEeeCC-CCCccCHHHHHHHHhhCCCeeccCCCCCchH---HHhhcCCChhhhhh--hhhcCCccCCC
Q 010538 394 ----HDTGSMVSFNLKRP-DGSWFGYREVEKLASLSGIQLRTGCFCNPGA---CAKYLGLSHSDLLS--NIEAGHVCWDD 463 (508)
Q Consensus 394 ----~~~~~~v~~~~~~~-~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~---~~~~~~~~~s~~~~--~~~~~~~~~~~ 463 (508)
...+++++|.+++. +.. +...+...|+..++.++.|..|+... +. .+|+++. ++|.
T Consensus 321 ~~~~~~~g~i~sf~l~g~~~~~--~~~~~l~~l~~~~~a~s~G~~~s~~~~~~p~-----~~s~~~~~~~~g~------- 386 (415)
T 2fq6_A 321 KRDFTGSSGLFSFVLKKKLNNE--ELANYLDNFSLFSMAYSWGGYESLILANQPE-----HIAAIRPQGEIDF------- 386 (415)
T ss_dssp HHHCSCCCSEEEEEESSCCCHH--HHHHHHTTCSSCEECSCCCSSSCEEEEECHH-----HHHTTCTTCCCCC-------
T ss_pred HhhCCCCceEEEEEECCCCCHH--HHHHHHHhCCcCeEeccCCCCceeEEecCCC-----ccccccchhhcCC-------
Confidence 02478999999752 111 11123333344467789998887532 10 1233332 3433
Q ss_pred ccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 464 NDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 464 ~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
.++.||+|++.++++|+|+.+.++|+.+
T Consensus 387 -------~~~~iRlS~G~e~~~d~i~~l~~al~~~ 414 (415)
T 2fq6_A 387 -------SGTLIRLHIGLEDVDDLIADLDAGFARI 414 (415)
T ss_dssp -------CSCEEEEECCSSCHHHHHHHHHHHHHTT
T ss_pred -------CCCEEEEEecCCCHHHHHHHHHHHHHhh
Confidence 3689999999999999999999998753
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.6e-26 Score=235.93 Aligned_cols=321 Identities=15% Similarity=0.071 Sum_probs=231.1
Q ss_pred CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeE
Q 010538 52 YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSY 131 (508)
Q Consensus 52 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~v 131 (508)
.+|.+++++.+.+. . ++.....+..........++++++++++++.+. .+++ +++++|+..++.++ ..+|+.|
T Consensus 74 ~~p~v~~a~~~~l~-~-~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~---~i~~-~sGt~a~~~~l~~~-~~~gd~V 146 (409)
T 3kki_A 74 NHPLIKARLAKSLL-E-EQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDE---CLLS-QSGWNANVGLLQTI-CQPNTNV 146 (409)
T ss_dssp TCHHHHHHHHHHHH-S-CCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCSE---EEEE-SCHHHHHHHHHHHH-CCTTCEE
T ss_pred CCHHHHHHHHHHHH-H-cCCCCCccccccCCcHHHHHHHHHHHHHhCCCe---EEEe-cchHHHHHHHHHHh-cCCCCEE
Confidence 47888888766543 2 222221222222233456678899999999863 3555 55579999999988 6889999
Q ss_pred EEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCC
Q 010538 132 MYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSEC 211 (508)
Q Consensus 132 l~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~ 211 (508)
+++...|+++..... ..|.+++.++.. |+++++ +++. ..++++|++++++
T Consensus 147 l~~~~~~~~~~~~~~---~~g~~~~~~~~~--------------------d~~~le--~~l~-----~~~~~~vi~~~~~ 196 (409)
T 3kki_A 147 YIDFFAHMSLWEGAR---YANAQAHPFMHN--------------------NCDHLR--MLIQ-----RHGPGIIVVDSIY 196 (409)
T ss_dssp EEETTSCHHHHHHHH---HTTCEEEEECTT--------------------CHHHHH--HHHH-----HHCSCEEEEESBC
T ss_pred EECCCcCHHHHHHHH---HcCCeEEEecCC--------------------CHHHHH--HHHH-----hcCCeEEEECCCC
Confidence 999999988776544 358888877652 355666 4442 1246999999999
Q ss_pred CCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCC---------CCCCCCCcEEEEeccccccCCCc
Q 010538 212 NFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPP---------DLSKYPVDFVVMSFYKIFGYPTG 282 (508)
Q Consensus 212 n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~---------d~~~~~~D~~~~S~~K~~g~P~G 282 (508)
||||.+.|+++|.++|++ +|+++|+|++|+.+.... ++. .++|+++.|+||+++ +.|
T Consensus 197 nptG~~~~l~~l~~la~~------------~~~~li~De~~~~g~~g~~g~~~~~~~~~~-~~~di~~~s~sK~~~-~~g 262 (409)
T 3kki_A 197 STLGTIAPLAELVNISKE------------FGCALLVDESHSLGTHGPNGAGLLAELGLT-REVHFMTASLAKTFA-YRA 262 (409)
T ss_dssp TTTCCBCCHHHHHHHHHH------------HTCEEEEECTTTTTTSSGGGCCHHHHHTCG-GGCSEEEEESSSTTC-SSC
T ss_pred CCCCCcCCHHHHHHHHHH------------cCCEEEEECCccccccCCCCCcchhhcCCC-CCCCEEEeecchhhC-CCc
Confidence 999999999999999998 999999999998754321 121 257999999999999 545
Q ss_pred ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHH
Q 010538 283 LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLG 362 (508)
Q Consensus 283 ~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~ 362 (508)
|+++.++++++.+..... ... ..++.+...++++.++++.+.+. +.+++++.+++
T Consensus 263 -g~v~~~~~~~~~~~~~~~---------------------~~~-~~~~~~~~~~aa~~aal~~~~~~--~~~~~~~~~~~ 317 (409)
T 3kki_A 263 -GAIWCNNEVNRCVPFISY---------------------PAI-FSSTLLPYEAAGLETTLEIIESA--DNRRQHLDRMA 317 (409)
T ss_dssp -EEEEESSSGGGTHHHHCH---------------------HHH-HSBCCCHHHHHHHHHHHHHHHHC--HHHHHHHHHHH
T ss_pred -eEEEECHHHHHHHHHhCc---------------------Ccc-ccCCCcHHHHHHHHHHHHHHhcC--HHHHHHHHHHH
Confidence 999999888765543211 001 12335666777888888887664 78889999999
Q ss_pred HHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhh
Q 010538 363 MYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKY 442 (508)
Q Consensus 363 ~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~ 442 (508)
+++.+.|+++ ++++.+ . ++++++.++... +..++.+.|.++||.++++..+..+
T Consensus 318 ~~l~~~L~~~-------g~~~~~--~--------~~~~~~~~~~~~----~~~~~~~~L~~~Gv~v~~~~~~~~~----- 371 (409)
T 3kki_A 318 RKLRIGLSQL-------GLTIRS--E--------SQIIGLETGDER----NTEKVRDYLESNGVFGSVFCRPATS----- 371 (409)
T ss_dssp HHHHHHHHTT-------TCCCCC--S--------SSEEEEEEESHH----HHHHHHHHHHHTTEECEEECTTSSC-----
T ss_pred HHHHHHHHHc-------CCccCC--C--------CCEEEEEeCCHH----HHHHHHHHHHHCCceEeeeCCCCcC-----
Confidence 9999999987 455442 1 788999886531 2235788888889999875432221
Q ss_pred cCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 443 LGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 443 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
...+++|++++.++|++|+++++++|+++++.
T Consensus 372 ---------------------------~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 372 ---------------------------KNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp ---------------------------TTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------CCCcEEEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence 12689999999999999999999999988764
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-27 Score=247.65 Aligned_cols=371 Identities=11% Similarity=0.056 Sum_probs=236.7
Q ss_pred hHHHHHHhhccCC--CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCC-CCC---ccchhhhhhHHHHHHHHHHHHHcC-
Q 010538 26 IDQIRATEFKRLE--NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGN-PHS---QSDISLATCDIVRAAREQVLDYFN- 98 (508)
Q Consensus 26 ~~~~r~~~f~~~~--~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~r~~la~~~~- 98 (508)
|+.+..+.|.... .+.+.|+.+....+++.+.++ +.......... .+. ....++.......++++.++++++
T Consensus 23 ~~~~~~~~y~~~~~p~~~i~lg~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~ 101 (435)
T 3piu_A 23 WQEYEKNPYHEVHNTNGIIQMGLAENQLCFDLLESW-LAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAE 101 (435)
T ss_dssp HHHHHHSBCBTTTBTTSBEECSSCCCCSSHHHHHHH-HHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHH
T ss_pred HHHhhcCCCCcccCCCCeEEeccccccccHHHHHHH-HHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHH
Confidence 5555222554432 457788887766654444443 34332211000 000 000111111223567788888777
Q ss_pred -------CCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCcccccc
Q 010538 99 -------ASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSE 171 (508)
Q Consensus 99 -------~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~ 171 (508)
++++ +|++|+|+++|+.+++.++ .++|+.|+++...|+++..... ...|.+++.+|.+..+..
T Consensus 102 ~~~~~~~~~~~--~v~~~~gg~~a~~~~~~~l-~~~gd~vl~~~p~~~~~~~~~~--~~~g~~~~~~~~~~~~~~----- 171 (435)
T 3piu_A 102 IRGNKVTFDPN--HLVLTAGATSANETFIFCL-ADPGEAVLIPTPYYPGFDRDLK--WRTGVEIVPIHCTSSNGF----- 171 (435)
T ss_dssp HTTTSSCCCGG--GEEEEEHHHHHHHHHHHHH-CCTTCEEEEEESCCTTHHHHTT--TTTCCEEEEEECCGGGTS-----
T ss_pred hhCCCCCCCHH--HEEEcCChHHHHHHHHHHh-cCCCCeEEECCCccccHHHHHH--HhcCCEEEEeeCCCccCC-----
Confidence 6677 8999999999999999998 6789999999988887765432 146999999998764322
Q ss_pred ccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEecc
Q 010538 172 SLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAA 251 (508)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a 251 (508)
..|+++++ +++++....++++++|++++++||||.++|.+++.++++ +|+++|+++|+|++
T Consensus 172 --------~~d~~~l~--~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~---------~~~~~~~~li~Dea 232 (435)
T 3piu_A 172 --------QITETALE--EAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLS---------FVEDKGIHLISDEI 232 (435)
T ss_dssp --------CCCHHHHH--HHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHH---------HHHHHTCEEEEECT
T ss_pred --------cCCHHHHH--HHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHH---------HHHHcCCEEEEecc
Confidence 11577777 554321111347899999999999999999876666655 44559999999999
Q ss_pred ccCC----CCCCCCC----C---------CCCcEEEEeccccccCCCc--ceEEEEec-hhHhhhccccccCceEEeccc
Q 010538 252 KGCV----TQPPDLS----K---------YPVDFVVMSFYKIFGYPTG--LGALIMRN-DAAKLLKNTYFSGGTVAASIA 311 (508)
Q Consensus 252 ~~~g----~~~~d~~----~---------~~~D~~~~S~~K~~g~P~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~ 311 (508)
|+.+ ....++. + .+.++++.|+||++| .+| +|++++++ .+.+.+....
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g-~~G~r~G~~~~~~~~~~~~~~~~~----------- 300 (435)
T 3piu_A 233 YSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLG-LPGFRVGAIYSNDDMVVAAATKMS----------- 300 (435)
T ss_dssp TGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSC-CGGGCEEEEEESCHHHHHHHHHHG-----------
T ss_pred ccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccC-CCceeEEEEEeCCHHHHHHHHHHh-----------
Confidence 9752 2222221 1 123388999999998 446 79999954 4444333210
Q ss_pred chhhhhhccCccccccCCCCChhHHHHHHHHHHHHH--hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCC
Q 010538 312 DIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN--SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTS 389 (508)
Q Consensus 312 ~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~--~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~ 389 (508)
..++.+.....++.++++... +..+++.++++.++++++.+.|++. +++++.+..
T Consensus 301 ---------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~- 357 (435)
T 3piu_A 301 ---------------SFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-------GISCLNGNA- 357 (435)
T ss_dssp ---------------GGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-------TCEECCCCS-
T ss_pred ---------------hcCCCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCcccCCCe-
Confidence 012233444444444444211 1135777889999999999999886 577765543
Q ss_pred CcccCCCCceEEEEeeCCCCC-cc-CHHHHHHHHhh-CCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccc
Q 010538 390 EVSYHDTGSMVSFNLKRPDGS-WF-GYREVEKLASL-SGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDI 466 (508)
Q Consensus 390 ~~~~~~~~~~v~~~~~~~~~~-~~-~~~~l~~~L~~-~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 466 (508)
+.++++.+++.... .. +..++.+.|.+ +||.+++|..|...
T Consensus 358 -------g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~----------------------------- 401 (435)
T 3piu_A 358 -------GLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCT----------------------------- 401 (435)
T ss_dssp -------SSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCS-----------------------------
T ss_pred -------eEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCCC-----------------------------
Confidence 68899998753110 00 12346666654 49999998755432
Q ss_pred cCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 467 IHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 467 ~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
.++++||+++.. |.++++.+++.|+++++.+
T Consensus 402 ----~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~~~ 432 (435)
T 3piu_A 402 ----EPGWFRVCFANL-PERTLDLAMQRLKAFVGEY 432 (435)
T ss_dssp ----STTEEEEECSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCEEEEEeeCC-CHHHHHHHHHHHHHHHHHH
Confidence 268999999876 9999999999999887654
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.7e-27 Score=235.74 Aligned_cols=334 Identities=13% Similarity=0.036 Sum_probs=215.0
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKL 118 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~ 118 (508)
..+|+|+++..+.+++.+.+++.+. .. . ...|. ......++++++|+++|.+ ++++++|+|+|+.+
T Consensus 3 ~~~i~~~~~~~~~p~~~~~~a~~~~-~~----~-~~~y~----~~~~~~~l~~~la~~~g~~----~~~~~~~gt~a~~~ 68 (347)
T 1jg8_A 3 HMMIDLRSDTVTKPTEEMRKAMAQA-EV----G-DDVYG----EDPTINELERLAAETFGKE----AALFVPSGTMGNQV 68 (347)
T ss_dssp --CEECSCGGGCCCCHHHHHHHHTC-CC----C-CGGGT----CCHHHHHHHHHHHHHHTCS----EEEEESCHHHHHHH
T ss_pred ceEEEeccccCCCCCHHHHHHHhcC-CC----C-CcccC----CChHHHHHHHHHHHHhCCc----eEEEecCcHHHHHH
Confidence 4579999999988888777765321 11 1 11121 1234667899999999984 56888888999999
Q ss_pred HHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCC
Q 010538 119 VGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPA 198 (508)
Q Consensus 119 ~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~ 198 (508)
++.++ .++|++|+++...|++.+.....+...|++++.+ .+.++.+ |+++++ +++.+....
T Consensus 69 ~~~~~-~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~~~~~~---------------d~~~l~--~~i~~~~~~ 129 (347)
T 1jg8_A 69 SIMAH-TQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PGKNGAM---------------DPDDVR--KAIRPRNIH 129 (347)
T ss_dssp HHHHH-CCTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CEETTEE---------------CHHHHH--HHSCCSCTT
T ss_pred HHHHh-cCCCCEEEEcCcchhhhccccchhhccCeEEEEe-cCCCCcc---------------CHHHHH--HHhcccccc
Confidence 88887 6789999999988876543223345568999888 4333333 678888 666321001
Q ss_pred CCCceEEEEeCCCCCC-ccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCC---CCCCCCCC--CCCcEEEEe
Q 010538 199 GDAYNLFAFPSECNFS-GSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCV---TQPPDLSK--YPVDFVVMS 272 (508)
Q Consensus 199 ~~~t~lv~~~~~~n~t-G~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g---~~~~d~~~--~~~D~~~~S 272 (508)
.++|++|++++++||| |.++|.+++.++++ +|+++|+++++|++|..+ ..+.+... .++|.+++|
T Consensus 130 ~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~---------~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s 200 (347)
T 1jg8_A 130 FPRTSLIAIENTHNRSGGRVVPLENIKEICT---------IAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFC 200 (347)
T ss_dssp SCCEEEEEEESSBTTTTSBCCCHHHHHHHHH---------HHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEE
T ss_pred ccCceEEEEeccccccCCccCcHHHHHHHHH---------HHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEe
Confidence 1378999999999999 99999765554444 333499999999987542 11223221 257888999
Q ss_pred ccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCCh--hHHHHHHHHHHHHHhcC
Q 010538 273 FYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASF--LSIASIRHGFNLINSLT 350 (508)
Q Consensus 273 ~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~--~~~~~l~~al~~~~~~g 350 (508)
+||++++|.| |+++.++++++.+...... ..++... ...++...+++.+
T Consensus 201 ~sK~l~~~~G-~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~l~~~---- 251 (347)
T 1jg8_A 201 LSKGLCAPVG-SVVVGDRDFIERARKARKM------------------------LGGGMRQAGVLAAAGIIALTKM---- 251 (347)
T ss_dssp SSSTTCCSSC-EEEEECHHHHHHHHHHHHH------------------------HTCCCSSTHHHHHHHHHHHHHS----
T ss_pred cccccCCCce-EEEEcCHHHHHHHHHHHHH------------------------cCCchhHHHHHHHHHHHHHHHH----
Confidence 9999985533 3556677776655432100 0111111 1112222234321
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeecc
Q 010538 351 VPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRT 430 (508)
Q Consensus 351 ~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~ 430 (508)
.+.+ ++..+.++++.+.|+++ ++++..++. .++++++.++.. ..+..++.+.|.++||.+++
T Consensus 252 ~~~~-~~~~~~~~~l~~~L~~~-------~~~~~~~~~-------~~~~~~~~~~~~---~~~~~~~~~~l~~~gi~v~~ 313 (347)
T 1jg8_A 252 VDRL-KEDHENARFLALKLKEI-------GYSVNPEDV-------KTNMVILRTDNL---KVNAHGFIEALRNSGVLANA 313 (347)
T ss_dssp STTH-HHHHHHHHHHHHHHHHH-------TCBCCGGGC-------CSSEEEEECTTS---SSCHHHHHHHHHHHTEECEE
T ss_pred HHHH-HHHHHHHHHHHHHHHhc-------CceeccCCC-------cceEEEEEcccc---cCCHHHHHHHHHHCCCEEec
Confidence 2222 22345678888888765 344322211 268888888631 12345688888889999876
Q ss_pred CCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 431 GCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 431 g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
+. .+.+|++++.++|.+|++++++.|+++++
T Consensus 314 ~~---------------------------------------~~~iRl~~~~~~~~e~i~~~~~~l~~~l~ 344 (347)
T 1jg8_A 314 VS---------------------------------------DTEIRLVTHKDVSRNDIEEALNIFEKLFR 344 (347)
T ss_dssp EE---------------------------------------TTEEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred CC---------------------------------------CCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 31 46799999999999999999999998764
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-26 Score=240.15 Aligned_cols=319 Identities=14% Similarity=0.045 Sum_probs=221.2
Q ss_pred hhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEE
Q 010538 78 ISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAF 156 (508)
Q Consensus 78 ~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~ 156 (508)
.+.......+++++++++++|++ + .+++++|+ +|+++++.++ .++|++|+++...|+++..+.+ .++..|++++
T Consensus 108 y~r~~~~~~~~l~~~lA~l~g~~-~--~v~~~sG~-~Ai~~al~~l-~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~ 182 (445)
T 1qgn_A 108 YGRYGNPTTVVLEEKISALEGAE-S--TLLMASGM-CASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETILPKMGITAT 182 (445)
T ss_dssp BGGGCCHHHHHHHHHHHHHHTCS-E--EEEESCHH-HHHHHHHHHH-SCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEE
T ss_pred ccCCCChHHHHHHHHHHHHhCCC-c--EEEeCCHH-HHHHHHHHHH-hCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEE
Confidence 33334567888999999999986 4 57766665 9999999988 5789999999999988877655 4566799999
Q ss_pred EEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCc-eEEEEeCCCCCCccccCHHHHHHHHcCCccccc
Q 010538 157 AIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAY-NLFAFPSECNFSGSRFNLDLINIMKKNPERILE 235 (508)
Q Consensus 157 ~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t-~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~ 235 (508)
.+|.+ |+++++ +++ +++| ++|++++++||||.+.|+++|.++|++
T Consensus 183 ~v~~~--------------------d~~~l~--~ai------~~~tv~lV~le~p~NptG~v~dl~~I~~la~~------ 228 (445)
T 1qgn_A 183 VIDPA--------------------DVGALE--LAL------NQKKVNLFFTESPTNPFLRCVDIELVSKLCHE------ 228 (445)
T ss_dssp EECSS--------------------CHHHHH--HHH------HHSCEEEEEEESSCTTTCCCCCHHHHHHHHHH------
T ss_pred EeCCC--------------------CHHHHH--HHh------ccCCCCEEEEeCCCCCCCcccCHHHHHHHHHH------
Confidence 99864 245566 333 3567 999999999999999999999999998
Q ss_pred cCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc---ceEEEEechhHhhhccccccCceEEecccc
Q 010538 236 ISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG---LGALIMRNDAAKLLKNTYFSGGTVAASIAD 312 (508)
Q Consensus 236 ~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~ 312 (508)
+|+++++|++|+.+... +...+++|+++.|+||++| +.| .|++++++++++.+.+..
T Consensus 229 ------~g~~livD~a~~~~~~~-~~~~~g~Div~~S~sK~~g-g~gd~~~G~l~~~~~l~~~l~~~~------------ 288 (445)
T 1qgn_A 229 ------KGALVCIDGTFATPLNQ-KALALGADLVLHSATKFLG-GHNDVLAGCISGPLKLVSEIRNLH------------ 288 (445)
T ss_dssp ------TTCEEEEECTTTCTTTC-CTTTTTCSEEEECTTTTTT-CSSSCCCEEEEECHHHHHHHHHHH------------
T ss_pred ------cCCEEEEECCCcccccC-CccccCCEEEEECCccccc-ccccceEEEEEECHHHHHHHHHHH------------
Confidence 99999999999877543 2335689999999999999 666 899999988876654321
Q ss_pred hhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceE-EEecCCCCCc
Q 010538 313 IDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVC-TIYGTYTSEV 391 (508)
Q Consensus 313 ~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~-~~~~~~~~~~ 391 (508)
....++++....+.+..+++. +....++..+.++++.+.|++.+ ++ +++.|.-..
T Consensus 289 ------------~~~g~~~~~~~a~~~~~~l~~-----l~~r~~~~~~~a~~l~~~L~~~p------~v~~v~~p~l~~- 344 (445)
T 1qgn_A 289 ------------HILGGALNPNAAYLIIRGMKT-----LHLRVQQQNSTALRMAEILEAHP------KVRHVYYPGLQS- 344 (445)
T ss_dssp ------------HHHCCCCCHHHHHHHHHHGGG-----HHHHHHHHHHHHHHHHHHHHTCT------TEEEEECTTSSS-
T ss_pred ------------HHhCCCCCHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHhcCC------CceEEECCCCCC-
Confidence 011233444333333334443 33444555666888888998873 56 555542110
Q ss_pred cc---------CCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHH--HhhcCCChhhhhhhhhcCCcc
Q 010538 392 SY---------HDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGAC--AKYLGLSHSDLLSNIEAGHVC 460 (508)
Q Consensus 392 ~~---------~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~--~~~~~~~~s~~~~~~~~~~~~ 460 (508)
.+ ...+++++|.+++.. . ....+...|+..++.++.|..|+.... ...-.--+++.+.++|.
T Consensus 345 ~p~~~~~~~~~~g~g~ivsf~l~~~~-~--~~~~~l~~l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~---- 417 (445)
T 1qgn_A 345 HPEHHIAKKQMTGFGGAVSFEVDGDL-L--TTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGI---- 417 (445)
T ss_dssp STTHHHHHHHCSCCCSEEEEEESSCH-H--HHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTC----
T ss_pred CchHHHHHHhccCCCcEEEEEECCCH-H--HHHHHHHhCCCceEeccCCCCceeeecccccccccCCHHHHHhcCC----
Confidence 00 014899999997521 0 012244445445888999998875210 00000113455666765
Q ss_pred CCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 461 WDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 461 ~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
.++.||+|++ .||++.+++.|++.++
T Consensus 418 ----------~~~~iRlSvG----~Edid~li~~L~~al~ 443 (445)
T 1qgn_A 418 ----------MDNLVRFSFG----VEDFDDLKADILQALD 443 (445)
T ss_dssp ----------CSSEEEEECC----SSCHHHHHHHHHHHHH
T ss_pred ----------CCCeEEEEec----cCCHHHHHHHHHHHHh
Confidence 2689999999 3689999988887664
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-25 Score=228.26 Aligned_cols=298 Identities=13% Similarity=0.065 Sum_probs=218.2
Q ss_pred HHHHHHHHHHHc-CCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCcc
Q 010538 86 VRAAREQVLDYF-NASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAV 164 (508)
Q Consensus 86 ~~~~r~~la~~~-~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~ 164 (508)
..++++.+++++ +++++ +|++|+|+|+|+.+++.++ .++|++|+++...|+++... ++..|++++.+|++...
T Consensus 65 ~~~l~~~la~~~~~~~~~--~v~~~~g~~~a~~~~~~~l-~~~gd~Vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~ 138 (375)
T 3op7_A 65 SPAFKKSVSQLYTGVKPE--QILQTNGATGANLLVLYSL-IEPGDHVISLYPTYQQLYDI---PKSLGAEVDLWQIEEEN 138 (375)
T ss_dssp CHHHHHHHHTTSSSCCGG--GEEEESHHHHHHHHHHHHH-CCTTCEEEEEESSCTHHHHH---HHHTTCEEEEEEEEGGG
T ss_pred hHHHHHHHHHHhccCChh--hEEEcCChHHHHHHHHHHh-cCCCCEEEEeCCCchhHHHH---HHHcCCEEEEEeccccC
Confidence 457789999988 57777 8999999999999999998 68899999998877766544 45579999999986432
Q ss_pred CccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC---HHHHHHHHcCCccccccCCCCC
Q 010538 165 DNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN---LDLINIMKKNPERILEISPFSK 241 (508)
Q Consensus 165 ~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~---i~~i~~l~~~~~~~~~~~~~~~ 241 (508)
.. ..|+++++ +++ ++++++|++++++||||.++| +++|.++|++
T Consensus 139 ~~-------------~~d~~~l~--~~l------~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~------------ 185 (375)
T 3op7_A 139 GW-------------LPDLEKLR--QLI------RPTTKMICINNANNPTGAVMDRTYLEELVEIASE------------ 185 (375)
T ss_dssp TT-------------EECHHHHH--HHC------CTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHT------------
T ss_pred CC-------------CCCHHHHH--Hhh------ccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHH------------
Confidence 21 12688888 555 467899999999999999999 7777777776
Q ss_pred CCeEEEEeccccCCCCC-C-C-CCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhh
Q 010538 242 GRWMVLIDAAKGCVTQP-P-D-LSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFV 316 (508)
Q Consensus 242 ~g~~vivD~a~~~g~~~-~-d-~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~ 316 (508)
+|+++|+|++|+..... . . ....+.++++.|++|.+| ++| +|++++++++++.+......
T Consensus 186 ~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~v~~~~~l~~~~~~~~~~-------------- 250 (375)
T 3op7_A 186 VGAYILSDEVYRSFSELDVPSIIEVYDKGIAVNSLSKTYS-LPGIRIGWVAANHQVTDILRDYRDY-------------- 250 (375)
T ss_dssp TTCEEEEECCSCCCSSSCCCCHHHHCTTEEEEEESSSSSS-CGGGCCEEEECCHHHHHHHTTTGGG--------------
T ss_pred cCCEEEEEcccccccccCCCchhhhcCCEEEEeEChhhcC-CcccceEEEEeCHHHHHHHHHHHhh--------------
Confidence 99999999998764332 1 1 112356689999999998 446 69999988888776644211
Q ss_pred hhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCC
Q 010538 317 KRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDT 396 (508)
Q Consensus 317 ~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 396 (508)
...+.+....+++..+++.... .+++.++++.++++++.+.|++. +++.+..+..
T Consensus 251 ----------~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~l~~~------~~~~~~~~~~-------- 305 (375)
T 3op7_A 251 ----------TMICAGVFDDLVAQLALAHYQE-ILERNRHILEENLAILDQWIEEE------PLVSYIRPAV-------- 305 (375)
T ss_dssp ----------TTSCCCHHHHHHHHHHHHTHHH-HHHHHHHHHHHHHHHHHHHHHHC------TTEEECCCSS--------
T ss_pred ----------hccCCCcHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHhhC------CCceEecCCC--------
Confidence 1123344455555556664333 36777888899999999999886 3687776543
Q ss_pred CceEEEEeeCCCCCccCHHHHHHHH-hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceE
Q 010538 397 GSMVSFNLKRPDGSWFGYREVEKLA-SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAI 475 (508)
Q Consensus 397 ~~~v~~~~~~~~~~~~~~~~l~~~L-~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i 475 (508)
+.++++.++.. .+..++.+.| +++||.+++|..|.. ++++
T Consensus 306 ~~~~~~~~~~~----~~~~~~~~~ll~~~gi~v~~g~~~~~-----------------------------------~~~i 346 (375)
T 3op7_A 306 VSTSFVKIAVD----MPMEDFCLQLLQEHGVLLVPGNRFER-----------------------------------DGYV 346 (375)
T ss_dssp SSCEEEEECCS----SCHHHHHHHHHHHHCEECEEGGGGTC-----------------------------------TTEE
T ss_pred eEEEeEEcCCC----CCHHHHHHHHHHhCCEEEeChhhhCC-----------------------------------CCeE
Confidence 55666676532 2334566665 789999998764321 5789
Q ss_pred EEecCCCCCHHHHHHHHHhhhhhhhhhh
Q 010538 476 RVSFGYMSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 476 Ris~~~~~t~eev~~l~~~~~~~~~~~~ 503 (508)
|++++. +.++++.+++.|.++++.+.
T Consensus 347 Ri~~~~--~~~~i~~~l~~l~~~l~~~~ 372 (375)
T 3op7_A 347 RLGFAC--EQETLIKGLEKLSQFLRRFD 372 (375)
T ss_dssp EECCCS--CHHHHHHHHHHHHHHHGGGC
T ss_pred EEEecC--CHHHHHHHHHHHHHHHHHHh
Confidence 999885 45999999999998876543
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-26 Score=239.90 Aligned_cols=362 Identities=11% Similarity=-0.001 Sum_probs=227.3
Q ss_pred CCCe-eeeCCCCCCCCHHHHHHHHHHhhccccCC-------CC-CccchhhhhhHHHHHHHHHHHHHc------CCCCCC
Q 010538 39 NGTV-YLDHAGATLYSELQMEAIFRDFTTNVYGN-------PH-SQSDISLATCDIVRAAREQVLDYF------NASMKD 103 (508)
Q Consensus 39 ~~~i-yld~~~~~~~~~~~~~a~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~r~~la~~~------~~~~~~ 103 (508)
++.| +|+.+.... ++.+.+++.+ .+.+.+.+ +. ..+..++......+++|+.+|+++ +++++
T Consensus 31 ~~~i~~l~~g~p~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~- 107 (444)
T 3if2_A 31 DQPVNMLGGGNPAK-IDAVNELFLE-TYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSE- 107 (444)
T ss_dssp SSCCEECSCCCCCC-CHHHHHHHHH-HHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGG-
T ss_pred chhhhccCCCCCCc-ccchHHHHHH-HHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHH-
Confidence 6788 999876655 5555554433 22233334 32 111112222223566778888877 56777
Q ss_pred ceEEEcCChHHHHHHHHhhcCCCCCC--------------eEEEe-cccccchHHHHH---HHHhcCCeEEEEccCC-cc
Q 010538 104 YKCIFTSGATAALKLVGEAFPWSHQS--------------SYMYT-MENHNSVLGIRE---YALSQGAAAFAIDVEE-AV 164 (508)
Q Consensus 104 ~~i~~t~g~t~al~~~~~~l~~~~g~--------------~vl~~-~~~h~s~~~~~~---~~~~~G~~v~~v~~~~-~~ 164 (508)
+|++|+|+|+|+++++.++ ..+|+ +|+++ ..+|+++..... .+...|..+..++.+. ++
T Consensus 108 -~i~~t~G~t~al~~~~~~l-~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 185 (444)
T 3if2_A 108 -NIALTNGSQNAFFYLFNLF-GGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEG 185 (444)
T ss_dssp -GEEEESSHHHHHHHHHHHS-SEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEETTEEE
T ss_pred -HEEEecCcHHHHHHHHHHH-hCCCccccccccccccccceEEEeCCCCccchhhcccccchhhccCceEEecccccccC
Confidence 8999999999999999998 56666 67765 667766654221 2234578888888764 22
Q ss_pred ----CccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCC
Q 010538 165 ----DNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFS 240 (508)
Q Consensus 165 ----~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~ 240 (508)
.+ |+++++ +++.+ .++++++|++++++||||.++|.+++.++++ +|+
T Consensus 186 ~~~~~~---------------d~~~l~--~~l~~---~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~---------~a~ 236 (444)
T 3if2_A 186 FFKYRV---------------DFEALE--NLPAL---KEGRIGAICCSRPTNPTGNVLTDEEMAHLAE---------IAK 236 (444)
T ss_dssp EEEEEC---------------CHHHHH--TCHHH---HTTCEEEEEEESSCTTTCCCCCHHHHHHHHH---------HHH
T ss_pred ccccCC---------------CHHHHH--HHHHh---cCCCceEEEeCCCCCCCCCcCCHHHHHHHHH---------HHH
Confidence 23 688888 54210 2568999999999999999999554444433 333
Q ss_pred CCCeEEEEeccccCCCCC-----CCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccch
Q 010538 241 KGRWMVLIDAAKGCVTQP-----PDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADI 313 (508)
Q Consensus 241 ~~g~~vivD~a~~~g~~~-----~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~ 313 (508)
++|+++|+|++|+.+... ......+.++++.|+||+ +.| | +|+++.++++++.+......
T Consensus 237 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~-G~r~G~~~~~~~l~~~~~~~~~~----------- 303 (444)
T 3if2_A 237 RYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKI-GLP-GMRTGIIVADAKVIEAVSAMNAV----------- 303 (444)
T ss_dssp HTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTT-TCG-GGCCEEEECCHHHHHHHHHHHHH-----------
T ss_pred HCCCEEEEECCCCCcccccccccccccCCCCEEEEechhhc-cCC-CCceEEEEECHHHHHHHHHHHHh-----------
Confidence 499999999999853222 222234678999999997 424 4 89999988887766543110
Q ss_pred hhhhhccCccccccCCCCChhHHHHHHHHHHHHHh-cChH-HHHHHHHHHHHHHHHHHhc-ccCCCCCceEEEecCCCCC
Q 010538 314 DFVKRRQGVEELFEDGTASFLSIASIRHGFNLINS-LTVP-AICRHIASLGMYVRKVLLS-LRHENGADVCTIYGTYTSE 390 (508)
Q Consensus 314 ~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~-~g~~-~i~~~~~~l~~~l~~~L~~-l~~~~~~~~~~~~~~~~~~ 390 (508)
...+.+.....++...++.... .... .+.+++.++++++.+.|.+ ++. -++.+..+..
T Consensus 304 -------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~~~~~~~~~-- 364 (444)
T 3if2_A 304 -------------VNLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGD----YPLMIHKPEG-- 364 (444)
T ss_dssp -------------HHSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSS----SSEEEECCCB--
T ss_pred -------------ccCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhccc----CCceEecCCc--
Confidence 0112223333333333331100 0012 2555667777777777755 210 1466665543
Q ss_pred cccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCC
Q 010538 391 VSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGK 470 (508)
Q Consensus 391 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 470 (508)
+.++++.++... ++..++.+.|.++||.+++|..|..+... .| ...
T Consensus 365 ------g~~~~~~~~~~~---~~~~~l~~~l~~~gi~v~~g~~~~~~~~~------~~-------------------~~~ 410 (444)
T 3if2_A 365 ------AIFLWLWFKDLP---ISTLDLYERLKAKGTLIVPSEYFFPGVDV------SD-------------------YQH 410 (444)
T ss_dssp ------SSEEEEEETTCS---SCHHHHHHHHHHTTEECEEGGGSCTTCCC------TT-------------------CSG
T ss_pred ------cEEEEEEcCCCC---CCHHHHHHHHHHCCeEEecchhhcCCCCC------cc-------------------ccc
Confidence 788888886421 34456888899999999999887653100 00 001
Q ss_pred CCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 471 PTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 471 ~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
..+++|||++. |.++++++++.|.++++.+
T Consensus 411 ~~~~iRis~~~--~~e~i~~~l~~l~~~~~~~ 440 (444)
T 3if2_A 411 AHECIRMSIAA--DEQTLIDGIKVIGEVVREL 440 (444)
T ss_dssp GGSEEEEESSS--CHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeC--CHHHHHHHHHHHHHHHHHH
Confidence 24789999997 9999999999999987654
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.9e-26 Score=240.66 Aligned_cols=344 Identities=13% Similarity=0.037 Sum_probs=222.2
Q ss_pred CCCCCCCHHHHHHHHHHhhcccc--CCCCCccchhhhhh-HHHHHHHHHHHHHcCCCCCCc-eEEEcCChHHHHHHHHhh
Q 010538 47 AGATLYSELQMEAIFRDFTTNVY--GNPHSQSDISLATC-DIVRAAREQVLDYFNASMKDY-KCIFTSGATAALKLVGEA 122 (508)
Q Consensus 47 ~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~r~~la~~~~~~~~~~-~i~~t~g~t~al~~~~~~ 122 (508)
++.+++++.|++++...+ .+.+ ++|++.+..+.... .+.+.+++++++++|++++++ ..++++|+|+|+.+++.+
T Consensus 61 as~n~~~~~V~eA~~~~l-~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~a 139 (490)
T 2a7v_A 61 ASENFCSRAALEALGSCL-NNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTA 139 (490)
T ss_dssp TTCCCCCHHHHHHHTSGG-GTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHH-cCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHH
Confidence 577778999999986644 3444 67877766665444 344478899999999987532 135666889999999999
Q ss_pred cCCCCCCeEEEecccccchHH--HH---HHHHhcCCeEE--EEccCC-ccCccccccccccccccccchhhhhcCCCCCC
Q 010538 123 FPWSHQSSYMYTMENHNSVLG--IR---EYALSQGAAAF--AIDVEE-AVDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 123 l~~~~g~~vl~~~~~h~s~~~--~~---~~~~~~G~~v~--~v~~~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
+ .++||+|+++..+|.++.. .. ..+...|..+. .++++. .+.+ |+++++ +++.
T Consensus 140 l-~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~i---------------D~d~le--~~l~- 200 (490)
T 2a7v_A 140 L-LQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLI---------------DYNQLA--LTAR- 200 (490)
T ss_dssp H-CCSCEECCC-------------------------------CCBCTTTCSB---------------CHHHHH--HHHH-
T ss_pred H-cCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCc---------------CHHHHH--HHHh-
Confidence 9 7899999999888865432 10 11122344333 344442 3444 688888 5442
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCC-----CCCCCCCCCCCcEE
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCV-----TQPPDLSKYPVDFV 269 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g-----~~~~d~~~~~~D~~ 269 (508)
.+++++|++...+| |...|+++|.++|++ +|+++++|++|+.| ..+.++. ++|++
T Consensus 201 ----~~~~klIi~~~s~~--~~~~dl~~i~~ia~~------------~g~~livD~Ah~~glv~~g~~~~~~~--~aDiv 260 (490)
T 2a7v_A 201 ----LFRPRLIIAGTSAY--ARLIDYARMREVCDE------------VKAHLLADMAHISGLVAAKVIPSPFK--HADIV 260 (490)
T ss_dssp ----HHCCSEEEECCSSC--CSCCCHHHHHHHHHH------------TTCEEEEECGGGHHHHHTTSSCCGGG--TCSEE
T ss_pred ----hcCCcEEEEcCCCC--CCcccHHHHHHHHHH------------cCCEEEEccccccccccCCcCCCCCC--CCCEE
Confidence 13568888776555 467899999999998 99999999999753 2333332 68999
Q ss_pred EEeccccccCCCcceEEEEechhH---------------hhhccccccCceEEecccchhhhhhccCccccccCCCCChh
Q 010538 270 VMSFYKIFGYPTGLGALIMRNDAA---------------KLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFL 334 (508)
Q Consensus 270 ~~S~~K~~g~P~G~G~l~~~~~~~---------------~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 334 (508)
++|+||+++||.| |+++.+++.+ ++++..++ ....|+++..
T Consensus 261 ~~S~hK~l~Gp~G-G~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-----------------------~g~qggp~~~ 316 (490)
T 2a7v_A 261 TTTTHKTLRGARS-GLIFYRKGVKAVDPKTGREIPYTFEDRINFAVF-----------------------PSLQGGPHNH 316 (490)
T ss_dssp EEESSGGGCSCSC-EEEEEECSEEEEETTTEEEEECCCHHHHHHHHT-----------------------TTTCCSCCHH
T ss_pred EECCcccCccccc-hheeeccchhcccccccchhhHHHHHHHHHHhc-----------------------ccCCCCchHH
Confidence 9999998877987 9999987531 11111111 1123567888
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCH
Q 010538 335 SIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGY 414 (508)
Q Consensus 335 ~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 414 (508)
.++++.+|+........++..+++.+++++|.+.|.+. |+++..+... .+++++.+.... ++.
T Consensus 317 ~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~-------G~~v~~~~t~-------t~lv~vdl~~~g---~~~ 379 (490)
T 2a7v_A 317 AIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-------GYSLVSGGTD-------NHLVLVDLRPKG---LDG 379 (490)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-------TCEEGGGSCS-------SSEEEEECTTTT---CCH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHc-------CcEEecCCCC-------CeEEEEEeCCCC---CCH
Confidence 88998888887654446888999999999999999986 6888754322 688888875421 344
Q ss_pred HHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecC----CCCCHHHHHH
Q 010538 415 REVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFG----YMSTFEDAKV 490 (508)
Q Consensus 415 ~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~t~eev~~ 490 (508)
.++.+.|++.||.+..+..+.... ...++.||++.. .-.+++|+++
T Consensus 380 ~~~~~~L~~~GI~v~~~~~p~d~~------------------------------p~~~~~iRig~~a~t~~g~~~~d~~~ 429 (490)
T 2a7v_A 380 ARAERVLELVSITANKNTCPGDRS------------------------------AITPGGLRLGAPALTSRQFREDDFRR 429 (490)
T ss_dssp HHHHHHHHHTTEECEEECCTTCCC------------------------------SSSCSEEEEESHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHhCCeEEecCccCCCCC------------------------------CCCCCceEecccccccCCCCHHHHHH
Confidence 568899999999998654322110 112578999764 3468999999
Q ss_pred HHHhhhhhhhh
Q 010538 491 NRCSSFDFVNF 501 (508)
Q Consensus 491 l~~~~~~~~~~ 501 (508)
++++|.+.+.-
T Consensus 430 ~~~~i~~~l~~ 440 (490)
T 2a7v_A 430 VVDFIDEGVNI 440 (490)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999887753
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-26 Score=238.07 Aligned_cols=349 Identities=15% Similarity=0.084 Sum_probs=235.3
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhcccc--CCCCCccchhhh-hhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVY--GNPHSQSDISLA-TCDIVRAAREQVLDYFNASMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~a 115 (508)
.+.+-|.. +..++++.+++++.+.+ .+.+ ++|.+.+..+.. ...+.+.+++.+++++|++++ +|++++| |+|
T Consensus 25 ~~~i~l~~-~~~~~~~~v~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~--~i~~~sG-t~a 99 (417)
T 3n0l_A 25 CEGLEMIA-SENFTLPEVMEVMGSIL-TNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFA--NVQPNSG-SQA 99 (417)
T ss_dssp HHSEECCT-TCCCCCHHHHHHHTBGG-GGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE--ECCCSSH-HHH
T ss_pred hcCeeeec-ccCCCCHHHHHHHhhhh-hccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCc--ceEeccH-HHH
Confidence 34566654 34556888888875533 2222 334333332222 334455688899999999877 7888777 799
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHh--cCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALS--QGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFP 193 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~--~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~ 193 (508)
+.+++.++ .++|++|++....|+++......+.. .+..+..++.+.++.+ |+++++ +++.
T Consensus 100 ~~~~~~~~-~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---------------d~~~l~--~~i~ 161 (417)
T 3n0l_A 100 NQGVYAAL-INPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRI---------------DYEKVR--EIAK 161 (417)
T ss_dssp HHHHHHHH-SCTTCEEEEECC----------------CCSEEEEECCCTTSSC---------------CHHHHH--HHHH
T ss_pred HHHHHHHh-cCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCc---------------CHHHHH--HHHH
Confidence 99999998 78899999999888876542222222 3455666666644444 678887 5442
Q ss_pred CCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC-----CCCCCCCCCcE
Q 010538 194 ERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ-----PPDLSKYPVDF 268 (508)
Q Consensus 194 ~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~-----~~d~~~~~~D~ 268 (508)
.+++++|++++++| |.+.|+++|.++|++ +|+++|+|++|+.|.. +.++. ++|+
T Consensus 162 -----~~~~~~v~~~~~~~--G~~~~l~~i~~l~~~------------~~~~li~Dea~~~g~~~~~~~~~~~~--~~di 220 (417)
T 3n0l_A 162 -----KEKPKLIVCGASAY--ARVIDFAKFREIADE------------IGAYLFADIAHIAGLVVAGEHPSPFP--YAHV 220 (417)
T ss_dssp -----HHCCSEEEECCSSC--CSCCCHHHHHHHHHH------------HTCEEEEECTTTHHHHHTTSSCCCTT--TCSE
T ss_pred -----hcCCeEEEECCccc--CccCCHHHHHHHHHH------------cCCEEEEECccchhhhhcccCCCccc--cceE
Confidence 14678898887664 999999999999998 9999999999865433 43443 5799
Q ss_pred EEEeccccccCCCcceEEEEe-chhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH
Q 010538 269 VVMSFYKIFGYPTGLGALIMR-NDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN 347 (508)
Q Consensus 269 ~~~S~~K~~g~P~G~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~ 347 (508)
+++|+||++++|.| |+++.+ +++.+.+.+....+ ..++++...++++..++....
T Consensus 221 ~~~s~sK~l~g~~~-G~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~aa~~~a~~~~~ 276 (417)
T 3n0l_A 221 VSSTTHKTLRGPRG-GIIMTNDEELAKKINSAIFPG-----------------------IQGGPLMHVIAAKAVGFKFNL 276 (417)
T ss_dssp EEEESSTTTCSCSC-EEEEESCHHHHHHHHHHHTTT-----------------------TCSSCCHHHHHHHHHHHHHHT
T ss_pred EEeeCccccCCCCe-eEEEECCHHHHHHHhhhhCCc-----------------------ccCCcHHHHHHHHHHHHHHHH
Confidence 99999998877875 999998 57766655432211 134667777788877777654
Q ss_pred hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCe
Q 010538 348 SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQ 427 (508)
Q Consensus 348 ~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~ 427 (508)
+.+++.+.+++.++++++.+.|.+. ++++..+... .+++++.+.... ++...+.+.|.++||.
T Consensus 277 ~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~~-------~~~~~~~~~~~~---~~~~~~~~~l~~~gi~ 339 (417)
T 3n0l_A 277 SDEWKVYAKQVRTNAQVLANVLMDR-------KFKLVSDGTD-------NHLVLMSFLDRE---FSGKDADLALGNAGIT 339 (417)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHT-------TCEEGGGSCS-------SSEEEEECTTSS---SCHHHHHHHHHHTTEE
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhC-------CceeccCCCC-------ceEEEEEcccCC---CCHHHHHHHHHHcCeE
Confidence 4457889999999999999999884 6777653221 677877775321 3445688999999999
Q ss_pred eccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC----CCHHHHHHHHHhhhhhhhh
Q 010538 428 LRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM----STFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 428 v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~----~t~eev~~l~~~~~~~~~~ 501 (508)
++.+....... .....+.+|+++... .|++|++++++.|.+.++.
T Consensus 340 v~~~~~~~~~~-----------------------------~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 388 (417)
T 3n0l_A 340 ANKNTVPGEIR-----------------------------SPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDD 388 (417)
T ss_dssp CEECCCTTCCS-----------------------------CTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred EeccccCCCCc-----------------------------ccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 98754221110 001246799998644 4699999999999988754
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-26 Score=241.31 Aligned_cols=305 Identities=11% Similarity=0.075 Sum_probs=210.2
Q ss_pred HHHHHHHHHHHcC--------CCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEE
Q 010538 86 VRAAREQVLDYFN--------ASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFA 157 (508)
Q Consensus 86 ~~~~r~~la~~~~--------~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~ 157 (508)
..++++.++++++ ++++ +|++|+|+++++.+++.++ ..+|+.|+++...|+++.... ....|++++.
T Consensus 85 ~~~lr~~la~~~~~~~g~~~~~~~~--~i~~~~G~~~ai~~~~~~~-~~~gd~Vl~~~p~y~~~~~~~--~~~~g~~~~~ 159 (428)
T 1iay_A 85 LPEFRKAIAKFMEKTRGGRVRFDPE--RVVMAGGATGANETIIFCL-ADPGDAFLVPSPYYPAFNRDL--RWRTGVQLIP 159 (428)
T ss_dssp CHHHHHHHHHHHHHHTTTCSCCCTT--SCEEEEHHHHHHHHHHHHH-CCTTCEEEEESSCCTTHHHHT--TTTTCCEEEE
T ss_pred cHHHHHHHHHHHHHhcCCCCCCChh--hEEEccChHHHHHHHHHHh-CCCCCeEEEccCCCcchHHHH--HHhcCCEEEE
Confidence 3456677777765 6677 8999999999999999998 578899999998888765422 2246899999
Q ss_pred EccCCcc--CccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC---HHHHHHHHcCCcc
Q 010538 158 IDVEEAV--DNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN---LDLINIMKKNPER 232 (508)
Q Consensus 158 v~~~~~~--~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~---i~~i~~l~~~~~~ 232 (508)
+|.+.+. .+ |+++++ +++++.....+++++|++++++||||.++| +++|.++|++
T Consensus 160 v~~~~~~~~~~---------------d~~~l~--~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~--- 219 (428)
T 1iay_A 160 IHCESSNNFKI---------------TSKAVK--EAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQ--- 219 (428)
T ss_dssp ECCCTTTTTCC---------------CHHHHH--HHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHT---
T ss_pred eecCCccCCcC---------------CHHHHH--HHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHH---
Confidence 9986421 23 567776 444210001347899999999999999999 6666666765
Q ss_pred ccccCCCCCCCeEEEEeccccCCC----CCCCCCC---------CCCc--EEEEeccccccCCCc--ceEEEE-echhHh
Q 010538 233 ILEISPFSKGRWMVLIDAAKGCVT----QPPDLSK---------YPVD--FVVMSFYKIFGYPTG--LGALIM-RNDAAK 294 (508)
Q Consensus 233 ~~~~~~~~~~g~~vivD~a~~~g~----~~~d~~~---------~~~D--~~~~S~~K~~g~P~G--~G~l~~-~~~~~~ 294 (508)
+|+++|+|++|+... ...++.. ++.| +++.|+||++| ++| +|++++ ++++++
T Consensus 220 ---------~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g-~~Glr~G~~~~~~~~~~~ 289 (428)
T 1iay_A 220 ---------HNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMG-LPGFRVGIIYSFNDDVVN 289 (428)
T ss_dssp ---------TTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSS-CGGGCEEEEEESCHHHHH
T ss_pred ---------CCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEecchhhcC-CCCceEEEEEeCCHHHHH
Confidence 999999999998522 1122211 1257 88999999998 557 699999 566665
Q ss_pred hhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH--hcChHHHHHHHHHHHHHHHHHHhcc
Q 010538 295 LLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN--SLTVPAICRHIASLGMYVRKVLLSL 372 (508)
Q Consensus 295 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~--~~g~~~i~~~~~~l~~~l~~~L~~l 372 (508)
.+.... ...+.+.....++.++++... +..++++++++.++++++.+.|+++
T Consensus 290 ~~~~~~--------------------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 343 (428)
T 1iay_A 290 CARKMS--------------------------SFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV 343 (428)
T ss_dssp HHHHHH--------------------------TTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH--------------------------hcccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 544220 012334444555555554311 1135778899999999999999886
Q ss_pred cCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCC-Cc-cCHHHHHHHHhhC-CCeeccCCCCCchHHHhhcCCChhh
Q 010538 373 RHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDG-SW-FGYREVEKLASLS-GIQLRTGCFCNPGACAKYLGLSHSD 449 (508)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~-~~~~~l~~~L~~~-gI~v~~g~~~~~~~~~~~~~~~~s~ 449 (508)
+++++.+.. +.++++++++... .. .+..++.+.|.++ ||.+++|..|...
T Consensus 344 -------g~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~------------ 396 (428)
T 1iay_A 344 -------GIKCLKNNA--------GLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQ------------ 396 (428)
T ss_dssp -------TCCBCCCSS--------SSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCS------------
T ss_pred -------CCcccCCCe--------eEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCC------------
Confidence 455544322 7888999865210 00 0123467777665 9999987644221
Q ss_pred hhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 450 LLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
.++++||+++ .+|.+++++++++|+++++
T Consensus 397 ---------------------~~~~iRis~~-~~~~e~i~~~~~~l~~~l~ 425 (428)
T 1iay_A 397 ---------------------EPGWFRVCFA-NMDDGTVDIALARIRRFVG 425 (428)
T ss_dssp ---------------------SSSEEEEECS-SSCHHHHHHHHHHHHHHHH
T ss_pred ---------------------CCCEEEEEEe-cCCHHHHHHHHHHHHHHHh
Confidence 1578999999 6899999999999998765
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=230.31 Aligned_cols=323 Identities=13% Similarity=0.074 Sum_probs=218.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA 163 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~ 163 (508)
....++++.++++++.+ ++++++|+|+|+.+++.++..++|++|+++...|+++... ++..|.+++.+|.+.+
T Consensus 38 ~~~~~l~~~la~~~~~~----~~~~~~~gt~a~~~~~~~~~~~~gd~v~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~ 110 (374)
T 3uwc_A 38 AELEKFEKRFAALHNAP----HAIGVGTGTDALAMSFKMLNIGAGDEVITCANTFIASVGA---IVQAGATPVLVDSENG 110 (374)
T ss_dssp HHHHHHHHHHHHHTTCS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHH---HHHTTCEEEEECBCTT
T ss_pred hhHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHH---HHHcCCEEEEEecCCC
Confidence 45778899999999986 5788999999999999998667899999999888877654 4557999999998755
Q ss_pred cCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCC
Q 010538 164 VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGR 243 (508)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g 243 (508)
..+ |+++++ +++ ++++++|+ ++|+||.+.|+++|.++|++ +|
T Consensus 111 ~~~---------------d~~~l~--~~~------~~~~~~v~---~~n~~G~~~~~~~i~~~~~~------------~~ 152 (374)
T 3uwc_A 111 YVI---------------DPEKIE--AAI------TDKTKAIM---PVHYTGNIADMPALAKIAKK------------HN 152 (374)
T ss_dssp SSB---------------CGGGTG--GGC------CTTEEEEC---CBCGGGCCCCHHHHHHHHHH------------TT
T ss_pred CCc---------------CHHHHH--HhC------CCCceEEE---EeCCcCCcCCHHHHHHHHHH------------cC
Confidence 544 577888 554 45778877 77899999999999999998 99
Q ss_pred eEEEEeccccCCCCCCCCCCCC--CcEEEEecc--ccccCCCcceEEEEec-hhHhhhccccccCceEEecccchhhhhh
Q 010538 244 WMVLIDAAKGCVTQPPDLSKYP--VDFVVMSFY--KIFGYPTGLGALIMRN-DAAKLLKNTYFSGGTVAASIADIDFVKR 318 (508)
Q Consensus 244 ~~vivD~a~~~g~~~~d~~~~~--~D~~~~S~~--K~~g~P~G~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~ 318 (508)
+++|+|++|+.|.. ++....+ .|++++|+| |+++++...|+++.++ ++.+.+.+...++... .|
T Consensus 153 ~~li~D~~~~~g~~-~~~~~~~~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~-------~~--- 221 (374)
T 3uwc_A 153 LHIVEDACQTILGR-INDKFVGSWGQFACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLYRNHGLIN-------RD--- 221 (374)
T ss_dssp CEEEEECTTCTTCE-ETTEETTSSSSEEEEECSSSSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEE-------TT---
T ss_pred CEEEEeCCCccCce-eCCeeccccccEEEEeCCCCCcCCccceeEEEEeCCHHHHHHHHHHHhcCccc-------cC---
Confidence 99999999998764 3433333 699999988 9998323367777765 4555455443322210 00
Q ss_pred ccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCce-EEEecCCCCCcccCCCC
Q 010538 319 RQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADV-CTIYGTYTSEVSYHDTG 397 (508)
Q Consensus 319 ~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~-~~~~~~~~~~~~~~~~~ 397 (508)
.....+.+. .+..+.+++.+....+++.+.++..++.+++.+.|.++ ++ +++...... ...
T Consensus 222 ------~~~~~~~~~-~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~------~~~~~~~~~~~~-----~~~ 283 (374)
T 3uwc_A 222 ------VCVEYGINC-RMDTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVDL------SEFIDVPVRREG-----VYH 283 (374)
T ss_dssp ------EESSCCCBC-BCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGG------TTTEECCCCCTT-----EEC
T ss_pred ------ccccccccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------CCeEEeccCCCC-----Cce
Confidence 001111222 22334445555455567889999999999999999887 35 666433221 112
Q ss_pred ceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCC----CCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCc
Q 010538 398 SMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCF----CNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTG 473 (508)
Q Consensus 398 ~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~----~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (508)
.++.+.+... +..++.+.|.++||.++++.. |.+.. ..+|+....+..+- ....+
T Consensus 284 ~~~~~~~~~~-----~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--------------~~~~~ 342 (374)
T 3uwc_A 284 VFHIYVLRVK-----YRDQLFQYLKDNGIEVKIHYPIAMHLQPAA--KSLGYQQGDFPMAE--------------KHGEA 342 (374)
T ss_dssp CCSSEEEEET-----THHHHHHHHHHTTBCCBCSCSSCGGGSGGG--GGGCCCTTSCHHHH--------------HHHHH
T ss_pred eeEEEEEEcC-----CHHHHHHHHHHCCCccccCCCCccccChhh--hhcCCccCCCccHH--------------HHHhC
Confidence 3233333322 234588999999999998751 11110 01111000000000 01137
Q ss_pred eEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 474 AIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 474 ~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
.+|++++.++|++||+++++.|+++++.
T Consensus 343 ~lrl~~~~~~t~edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 343 VITLPAHPYLTEEEINYIIKKVREFYLE 370 (374)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred EEEccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999998764
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=230.15 Aligned_cols=320 Identities=14% Similarity=0.104 Sum_probs=215.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC-
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE- 162 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~- 162 (508)
...+++++.+++++|.+ ++++++|+|+|+++++.++..++|++|+++..+|+++...++ ..|++++.++.+.
T Consensus 36 ~~~~~l~~~la~~~~~~----~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~~---~~g~~~~~~~~~~~ 108 (373)
T 3frk_A 36 DEDKKFEQEFADYCNVN----YCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFIATALAVS---YTGAKPIFVEPDIR 108 (373)
T ss_dssp HHHHHHHHHHHHHHTSS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCTHHHHHHH---HHSCEEEEECEETT
T ss_pred chHHHHHHHHHHHhCCC----eEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHH---HcCCEEEEEecccc
Confidence 45788999999999985 589999999999999999866889999999999998766544 4599999999873
Q ss_pred ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC
Q 010538 163 AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG 242 (508)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~ 242 (508)
...+ |+++++ +++ ++++++|+ ++|+||...|+++|.++|++ +
T Consensus 109 ~~~~---------------d~~~l~--~~l------~~~~~~v~---~~n~~G~~~~l~~i~~l~~~------------~ 150 (373)
T 3frk_A 109 TYNI---------------DPSLIE--SAI------TEKTKAII---AVHLYGQPADMDEIKRIAKK------------Y 150 (373)
T ss_dssp TTEE---------------CGGGTG--GGC------CTTEEEEE---EECCTTCCCCHHHHHHHHHH------------H
T ss_pred ccCc---------------CHHHHH--Hhc------CCCCeEEE---EECCCcCcccHHHHHHHHHH------------c
Confidence 3444 577888 554 45788887 56799999999999999998 8
Q ss_pred CeEEEEeccccCCCCCCCCCCCC--CcEEEEecc--ccccCCCcceEEEEech-hHhhhccccccCceEEecccchhhhh
Q 010538 243 RWMVLIDAAKGCVTQPPDLSKYP--VDFVVMSFY--KIFGYPTGLGALIMRND-AAKLLKNTYFSGGTVAASIADIDFVK 317 (508)
Q Consensus 243 g~~vivD~a~~~g~~~~d~~~~~--~D~~~~S~~--K~~g~P~G~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~ 317 (508)
|+++|+|++|+.|.. .+....+ .|++++|++ |+++++...|+++.+++ +.+.+.+...++... .+
T Consensus 151 ~~~li~D~a~~~g~~-~~~~~~~~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~~~~~~~~~~g~~~-------~~-- 220 (373)
T 3frk_A 151 NLKLIEDAAQAHGSL-YKGMKVGSLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEKIKALSNYGSEK-------KY-- 220 (373)
T ss_dssp TCEEEEECTTCTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSSCEEEEESCHHHHHHHHHHHBTTCSB-------TT--
T ss_pred CCEEEEECCcccCCE-ECCEeccccccEEEEeCcCCCccCccceeEEEEeCCHHHHHHHHHHHhcCccc-------CC--
Confidence 999999999998876 5555555 799999955 99983233577777654 555555544333210 00
Q ss_pred hccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCC
Q 010538 318 RRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTG 397 (508)
Q Consensus 318 ~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (508)
.....|. ++ .+..+.+++.+....+++.+.++.+++++++.+.|+++ ++.+...... ...
T Consensus 221 ------~~~~~g~-~~-~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~-----~~~ 280 (373)
T 3frk_A 221 ------HHIYKGF-NS-RLDELQAGFLRVKLKYLDKWNEERRKIAQKYIAGINNP-------NVIIPVEADY-----AKH 280 (373)
T ss_dssp ------BCCSCCC-BC-CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCT-------TEECCCCCTT-----EEC
T ss_pred ------ccccccc-cC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------ceEeccCCCC-----Cce
Confidence 0011121 11 12233344444444467888999999999999999887 3555432211 113
Q ss_pred ceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCC----CCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCc
Q 010538 398 SMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCF----CNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTG 473 (508)
Q Consensus 398 ~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~----~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (508)
.+..|.+... +...+.+.|.++||.++.+.. |.+.. ..++.....+..+ .....+
T Consensus 281 ~~~~~~~~~~-----~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~--------------~~~~~~ 339 (373)
T 3frk_A 281 VWYTFVIRSE-----KRDELQKYLNNNGIGTLIHYPIPIHLQQAY--KDLGFKTGNFPIA--------------EKIANE 339 (373)
T ss_dssp CCSSEEEEES-----SHHHHHHHHHHTTBCCBCSCSSCGGGSGGG--GGGCCCTTSSHHH--------------HHHHHH
T ss_pred eeEEEEEEeC-----CHHHHHHHHHHCCCCcccCcCCccccChHH--HhcCCCCCCCHHH--------------HHHHhC
Confidence 3333443322 234589999999999997642 21111 0111110000000 001237
Q ss_pred eEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 474 AIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 474 ~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
.+|++++.++|++||+++++.+++..
T Consensus 340 ~lrl~~~~~~t~~di~~~~~~l~~~~ 365 (373)
T 3frk_A 340 ILSIPIWYGMKNEEIEYVIDKINAWK 365 (373)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHTCC
T ss_pred EEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 89999999999999999999988753
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-25 Score=232.28 Aligned_cols=312 Identities=13% Similarity=0.080 Sum_probs=217.5
Q ss_pred HHHHHHHHHHHHHcCCCC---------CCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCe
Q 010538 84 DIVRAAREQVLDYFNASM---------KDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAA 154 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~---------~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~ 154 (508)
++.+++.+.+++..|.+. + +|++|+|+++|+.+++.++ ..+|++|++....|+++. ..++..|.+
T Consensus 82 ~lr~~ia~~l~~~~g~~~~~~~~~~~~~--~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~---~~~~~~g~~ 155 (425)
T 2r2n_A 82 ELLSWLKQLQIKLHNPPTIHYPPSQGQM--DLCVTSGSQQGLCKVFEMI-INPGDNVLLDEPAYSGTL---QSLHPLGCN 155 (425)
T ss_dssp HHHHHHHHHHHHHHCCTTTTSCGGGTCE--EEEEESSHHHHHHHHHHHH-CCTTCEEEEESSCCHHHH---HHHGGGTCE
T ss_pred HHHHHHHHHHHHhcCCCCccccccCCcC--cEEEeCcHHHHHHHHHHHh-CCCCCEEEEeCCCcHHHH---HHHHHcCCE
Confidence 455566666666678764 4 8999999999999999998 678899998886666544 445567999
Q ss_pred EEEEccCCccCccccccccccccccccchhhhhcCCCCCCCC------CCCCCceEEEE-eCCCCCCccccCHHHHHHHH
Q 010538 155 AFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERD------PAGDAYNLFAF-PSECNFSGSRFNLDLINIMK 227 (508)
Q Consensus 155 v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~------~~~~~t~lv~~-~~~~n~tG~~~~i~~i~~l~ 227 (508)
++.+|.+.++ + |+++++ +++++.. ...+++++|++ ++++||||.++|.+++.+++
T Consensus 156 ~~~v~~~~~~-~---------------d~~~l~--~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~ 217 (425)
T 2r2n_A 156 IINVASDESG-I---------------VPDSLR--DILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIY 217 (425)
T ss_dssp EEEECEETTE-E---------------CHHHHH--HHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHH
T ss_pred EEEeCcCCCC-C---------------CHHHHH--HHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHH
Confidence 9999986533 3 567777 5553110 01246788866 79999999999988444444
Q ss_pred cCCccccccCCCCCCCeEEEEeccccC----CCCCCCCCCC---CCcEEEEeccccccCCCc--ceEEEEechhHhhhcc
Q 010538 228 KNPERILEISPFSKGRWMVLIDAAKGC----VTQPPDLSKY---PVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKN 298 (508)
Q Consensus 228 ~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d~~~~---~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~ 298 (508)
+ +|+++|++||+|++|+. |..+.++..+ +.++++.|+||+++ | | +|++++++++++.+..
T Consensus 218 ~---------~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~-GlRiG~~~~~~~l~~~l~~ 286 (425)
T 2r2n_A 218 E---------LARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-S-GLRIGFLTGPKPLIERVIL 286 (425)
T ss_dssp H---------HHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-S-TTCCEEEEEEHHHHHHHHH
T ss_pred H---------HHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhcc-C-ccceEEEecCHHHHHHHHH
Confidence 4 33449999999999973 3333444332 45699999999998 7 6 7999999988776654
Q ss_pred ccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHh----cChHHHHHHHHHHHHHHHHHHhcccC
Q 010538 299 TYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINS----LTVPAICRHIASLGMYVRKVLLSLRH 374 (508)
Q Consensus 299 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~----~g~~~i~~~~~~l~~~l~~~L~~l~~ 374 (508)
... ...++.+.....++.++++.+.+ ..++.+++++++.++++.+.|++..
T Consensus 287 ~~~------------------------~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~- 341 (425)
T 2r2n_A 287 HIQ------------------------VSTLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWL- 341 (425)
T ss_dssp HHH------------------------TTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHH------------------------HhcCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence 311 11234566666666666664321 2357778888999999999998731
Q ss_pred CCCCceE-EEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhh
Q 010538 375 ENGADVC-TIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSN 453 (508)
Q Consensus 375 ~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~ 453 (508)
+++ .+..+.. +.++++++++.... ...+.+.|.++||.+++|..|..+.
T Consensus 342 ----~~~~~~~~p~~--------g~~~~~~~~~~~~~---~~~~~~~l~~~gv~v~pg~~f~~~~--------------- 391 (425)
T 2r2n_A 342 ----TGLAEWHVPAA--------GMFLWIKVKGINDV---KELIEEKAVKMGVLMLPGNAFYVDS--------------- 391 (425)
T ss_dssp ----SSSEEECCCSB--------SSEEEEEETTCSCC---HHHHHTHHHHTTEECEEGGGGSSST---------------
T ss_pred ----CCCeEEeCCCc--------eEEEEEEeCCCCCH---HHHHHHHHHHCCcEEechhhhcCCC---------------
Confidence 244 4444433 78899998753111 1225778889999999987654321
Q ss_pred hhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 454 IEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
....+++|||++. .+.++++++++.|+++++.
T Consensus 392 ---------------~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~ 423 (425)
T 2r2n_A 392 ---------------SAPSPYLRASFSS-ASPEQMDVAFQVLAQLIKE 423 (425)
T ss_dssp ---------------TSCCCEEEEECSS-CCHHHHHHHHHHHHHHHHH
T ss_pred ---------------CCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHH
Confidence 0125789999984 5999999999999987753
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-26 Score=238.22 Aligned_cols=311 Identities=13% Similarity=0.014 Sum_probs=212.1
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEEcc
Q 010538 82 TCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDV 160 (508)
Q Consensus 82 ~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~ 160 (508)
.....+++++.+|+++|++ + .+++++| |+|+++++. + .++|++|+++..+|++...+.. .++..|++++.+|.
T Consensus 53 ~~~~~~~lr~~la~~~g~~-~--~i~~~sG-t~a~~~al~-~-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~ 126 (393)
T 1n8p_A 53 QNPNRENLERAVAALENAQ-Y--GLAFSSG-SATTATILQ-S-LPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTND 126 (393)
T ss_dssp CCHHHHHHHHHHHHHTTCS-E--EEEESCH-HHHHHHHHH-T-SCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESS
T ss_pred CChhHHHHHHHHHHHhCCC-c--EEEECCh-HHHHHHHHH-H-cCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeCC
Confidence 3456888999999999987 3 4666555 899999999 6 6789999999989987666543 45667999999987
Q ss_pred CCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCC
Q 010538 161 EEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFS 240 (508)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~ 240 (508)
+ | ++++ +++ +++|++|++++++||||.++|+++|.++|++
T Consensus 127 ~--------------------d-~~l~--~~i------~~~t~lv~~~~~~nptG~~~~l~~i~~la~~----------- 166 (393)
T 1n8p_A 127 L--------------------L-NDLP--QLI------KENTKLVWIETPTNPTLKVTDIQKVADLIKK----------- 166 (393)
T ss_dssp H--------------------H-HHHH--HHS------CSSEEEEEECSSCTTTCCCCCHHHHHHHHHH-----------
T ss_pred C--------------------h-HHHH--Hhc------ccCceEEEEECCCCCcceecCHHHHHHHHHH-----------
Confidence 4 2 3345 333 4578999999999999999999999999997
Q ss_pred CC----CeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--c-eEEEEe-chhHhhhccccccCceEEecccc
Q 010538 241 KG----RWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--L-GALIMR-NDAAKLLKNTYFSGGTVAASIAD 312 (508)
Q Consensus 241 ~~----g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~-G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~ 312 (508)
+ |+++|+|++|+.+... ++..+++|+++.|+||++| |.| + |+++++ +++++.+.+...
T Consensus 167 -~~~~~~~~livD~a~~~~~~~-~~~~~~~di~~~S~sK~~g-~~G~rigG~~~~~~~~~~~~l~~~~~----------- 232 (393)
T 1n8p_A 167 -HAAGQDVILVVDNTFLSPYIS-NPLNFGADIVVHSATKYIN-GHSDVVLGVLATNNKPLYERLQFLQN----------- 232 (393)
T ss_dssp -HTTTTTCEEEEECTTTHHHHC-CGGGGTCSEEEEETTTTTT-CSSCCCCEEEEESCHHHHHHHHHHHH-----------
T ss_pred -hCCCCCCEEEEeCCccccccC-CHHHcCCeEEEEECccccc-CCCCceeEEEEeCCHHHHHHHHHHHH-----------
Confidence 8 9999999999876543 4445689999999999999 767 6 888885 566665543310
Q ss_pred hhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCce-EE-EecCCCCC
Q 010538 313 IDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADV-CT-IYGTYTSE 390 (508)
Q Consensus 313 ~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~-~~-~~~~~~~~ 390 (508)
...++.+....+++..+++. +....++..+.++.+.+.|.+.+ . +. +..|.-.
T Consensus 233 -------------~~g~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~L~~~~------~~l~~v~~p~l~- 287 (393)
T 1n8p_A 233 -------------AIGAIPSPFDAWLTHRGLKT-----LHLRVRQAALSANKIAEFLAADK------ENVVAVNYPGLK- 287 (393)
T ss_dssp -------------HHCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHTSCT------TTEEEEECTTST-
T ss_pred -------------hcCCCCCHHHHHHHHhccch-----HHHHHHHHHHHHHHHHHHHHhCC------CCceEEECCCCC-
Confidence 01123333333333334433 34455666667777777777652 2 32 2222110
Q ss_pred ccc---------CC-C-CceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhh------hhhh
Q 010538 391 VSY---------HD-T-GSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSD------LLSN 453 (508)
Q Consensus 391 ~~~---------~~-~-~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~------~~~~ 453 (508)
..+ .. . +++++|.+++.. . +...+...|...++.++.|..|+.... + ..++| ++.+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~~-~--~~~~~l~~l~~~~~~~s~G~~~s~~~~-p---~~~~h~~~~~~~~~~ 360 (393)
T 1n8p_A 288 THPNYDVVLKQHRDALGGGMISFRIKGGA-E--AASKFASSTRLFTLAESLGGIESLLEV-P---AVMTHGGIPKEAREA 360 (393)
T ss_dssp TSTTHHHHHHHSGGGCCCSEEEEEESSCH-H--HHHHHHHHCSSSEECSCCCCSSCEEEC-T---TTTTSCSSCTTTTTT
T ss_pred CCccHHHHHhhCCCCCCccEEEEEeCCcH-H--HHHHHHhhCCcceECCCCCCCcceeec-c---ccccccccCHHHHHh
Confidence 000 01 3 789999997521 0 112344445555677888877764320 0 01122 4555
Q ss_pred hhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 454 IEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
||. .++.||+|++.++++++|+.+.++++++
T Consensus 361 ~g~--------------~~~~iRlS~g~~~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 361 SGV--------------FDDLVRISVGIEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp TSC--------------CTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred cCC--------------CCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 654 2689999999999999999999998765
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-25 Score=238.34 Aligned_cols=344 Identities=11% Similarity=0.006 Sum_probs=226.4
Q ss_pred CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC--CCCCCceEEEcCChHHHHHHHHhhcCCCCCC
Q 010538 52 YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN--ASMKDYKCIFTSGATAALKLVGEAFPWSHQS 129 (508)
Q Consensus 52 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~--~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~ 129 (508)
+|+.+++++.+.+ ....+.....|........+.+++.+.+.+..| ++++ +|++|+|+++|+.+++.++...+|+
T Consensus 107 ~p~~~~~~a~~~l-~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~--~i~~t~G~~~al~~~~~~l~~~~gd 183 (500)
T 3tcm_A 107 FSADSISRAKQIL-AMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANAD--DIFLTDGASPGVHLMMQLLIRNEKD 183 (500)
T ss_dssp SCHHHHHHHHHHH-TTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGG--GEEEESSSHHHHHHHHHHHCCSTTE
T ss_pred CCHHHHHHHHHHH-HcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcc--cEEEcCCHHHHHHHHHHHHcCCCCC
Confidence 4666777664433 221110112233222233334444444444344 5666 8999999999999999998447899
Q ss_pred eEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeC
Q 010538 130 SYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPS 209 (508)
Q Consensus 130 ~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~ 209 (508)
.|+++...|+++... ++..|.+++.++++.+... ..|++.++ ++|++.....+++++|++++
T Consensus 184 ~Vlv~~p~y~~~~~~---~~~~g~~~~~~~~~~~~~~-------------~~d~~~l~--~~l~~~~~~~~~~k~ivl~~ 245 (500)
T 3tcm_A 184 GILVPIPQYPLYSAS---IALHGGALVPYYLNESTGW-------------GLETSDVK--KQLEDARSRGINVRALVVIN 245 (500)
T ss_dssp EEEEEESCCTHHHHH---HHHTTCEEEEEECBTTTTS-------------BCCHHHHH--HHHHHHHHTTCEEEEEEEES
T ss_pred EEEEeCCCcHhHHHH---HHHcCCEEEEEecccccCC-------------CCCHHHHH--HHHHHHHhcCCCceEEEEEC
Confidence 999999888766554 4456999999998764321 11677777 55532111123789999999
Q ss_pred CCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC-----CCCCC---------CCCC-cEEEEecc
Q 010538 210 ECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ-----PPDLS---------KYPV-DFVVMSFY 274 (508)
Q Consensus 210 ~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~-----~~d~~---------~~~~-D~~~~S~~ 274 (508)
++||||.+++.+++.++++ +|+++|+++++|++|+.... ..++. ..++ .+++.|+|
T Consensus 246 p~NPtG~~~s~~~l~~i~~---------la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~S 316 (500)
T 3tcm_A 246 PGNPTGQVLAEENQYDIVK---------FCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVS 316 (500)
T ss_dssp SCTTTCCCCCHHHHHHHHH---------HHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESS
T ss_pred CCCCCcccCCHHHHHHHHH---------HHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCC
Confidence 9999999999888777755 45559999999999875322 22211 1122 26678999
Q ss_pred ccc-cCCCc--ceEEEE---echhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHH----
Q 010538 275 KIF-GYPTG--LGALIM---RNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFN---- 344 (508)
Q Consensus 275 K~~-g~P~G--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~---- 344 (508)
|.| | ++| +|++++ ++++++.+.... ....+++..+.+++..+++
T Consensus 317 K~~~g-~~G~R~G~~~~~~~~~~~~~~l~~~~-------------------------~~~~~~~~~~q~~~~~~l~~~~~ 370 (500)
T 3tcm_A 317 KGYYG-ECGKRGGYFEITGFSAPVREQIYKIA-------------------------SVNLCSNITGQILASLVMNPPKA 370 (500)
T ss_dssp STTTC-CGGGCCEEEEEESCCTTHHHHHHHHH-------------------------HTTCCCCHHHHHHHHHHHSCCCS
T ss_pred ccCCC-CCccceEEEEEeCCCHHHHHHHHHHH-------------------------hcccCCCHHHHHHHHHHhcCccc
Confidence 988 6 556 799998 777776654321 0123456666666666654
Q ss_pred -------HHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCC-------
Q 010538 345 -------LINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGS------- 410 (508)
Q Consensus 345 -------~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------- 410 (508)
+... .+.+.++++++++++.+.|+++ +++++..+.+ +.++++++.-....
T Consensus 371 ~~~~~~~~~~~--~~~~~~~l~~~~~~l~~~L~~~------~g~~~~~~~g--------~~~~~~~~~lp~~~~~~~~~~ 434 (500)
T 3tcm_A 371 SDESYASYKAE--KDGILASLARRAKALEHAFNKL------EGITCNEAEG--------AMYVFPQICLPQKAIEAAKAA 434 (500)
T ss_dssp SSTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTS------TTEECCCCCB--------TTEECCEECCCHHHHHHHHHH
T ss_pred cchhHHHHHHH--HHHHHHHHHHHHHHHHHHHhcC------CCcEEecCCe--------EEEEeeeecCchhhHHHHHhc
Confidence 3332 5778889999999999999987 4788876543 55555444311100
Q ss_pred cc--CHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHH
Q 010538 411 WF--GYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDA 488 (508)
Q Consensus 411 ~~--~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev 488 (508)
.. +...+.++|+++||.+.+|..|.... ..+.+|+|++ ++.+++
T Consensus 435 g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~--------------------------------g~~~iRis~~--~~~e~i 480 (500)
T 3tcm_A 435 NKAPDAFYALRLLESTGIVVVPGSGFGQVP--------------------------------GTWHFRCTIL--PQEDKI 480 (500)
T ss_dssp TSCHHHHHHHHHHHHHCEECEESTTTCCCT--------------------------------TCCBEEEESC--SCTTTH
T ss_pred CCCcHHHHHHHHHHHCCEEEEeCcccCCCC--------------------------------CCCEEEEEEC--CCHHHH
Confidence 00 01113477888999999998876421 2568999999 899999
Q ss_pred HHHHHhhhhhhhh
Q 010538 489 KVNRCSSFDFVNF 501 (508)
Q Consensus 489 ~~l~~~~~~~~~~ 501 (508)
+++++.|+++++.
T Consensus 481 ~~~i~~l~~~~~~ 493 (500)
T 3tcm_A 481 PAVISRFTVFHEA 493 (500)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-25 Score=227.28 Aligned_cols=318 Identities=13% Similarity=0.092 Sum_probs=219.1
Q ss_pred CCCeeeeCCCCCC------CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGATL------YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|.+++.+ +++.+.+++.+.+ .. +.++...|. .....++++++++++|++ + ++++|+|+
T Consensus 26 ~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~-~~-~~~~~~~y~-----~~~~~~l~~~la~~~g~~-~--~v~~~~g~ 95 (375)
T 2eh6_A 26 EGKEYLDFVSGIGVNSLGHAYPKLTEALKEQV-EK-LLHVSNLYE-----NPWQEELAHKLVKHFWTE-G--KVFFANSG 95 (375)
T ss_dssp TCCEEEESSHHHHTCTTCBSCHHHHHHHHHHH-HH-CSCCCTTBC-----CHHHHHHHHHHHHTSSSC-E--EEEEESSH
T ss_pred CCCEEEEcCCcccccccCCCCHHHHHHHHHHH-Hh-ccccCcccC-----CHHHHHHHHHHHhhcCCC-C--eEEEeCch
Confidence 5678999875432 6788888775544 22 223322332 234567899999999984 6 89999999
Q ss_pred HHHHHHHHhhcC--C---CCC-CeEEEecccccchHHHHHHHHh-----cCCe-----EEEEccCCccCccccccccccc
Q 010538 113 TAALKLVGEAFP--W---SHQ-SSYMYTMENHNSVLGIREYALS-----QGAA-----AFAIDVEEAVDNDGLSESLVTS 176 (508)
Q Consensus 113 t~al~~~~~~l~--~---~~g-~~vl~~~~~h~s~~~~~~~~~~-----~G~~-----v~~v~~~~~~~~~~l~~~~~~~ 176 (508)
|+|+.+++.++. . ++| ++|++....|+.+......+.. .|.. +..+|.
T Consensus 96 t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 159 (375)
T 2eh6_A 96 TESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL---------------- 159 (375)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT----------------
T ss_pred HHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC----------------
Confidence 999999886531 2 456 8899888776655433222210 0111 222221
Q ss_pred cccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEeccc
Q 010538 177 TKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAK 252 (508)
Q Consensus 177 ~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~ 252 (508)
.|+++++ +++ .+++++|++++++|+||.+.| +++|.++|++ +|+++|+|++|
T Consensus 160 ----~d~~~l~--~~l------~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~------------~~~~li~De~~ 215 (375)
T 2eh6_A 160 ----NDIDSVY--KLL------DEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKE------------KDVLLIIDEVQ 215 (375)
T ss_dssp ----TCHHHHH--TTC------CTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHH------------HTCEEEEECTT
T ss_pred ----chHHHHH--HHh------cCCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHH------------hCCEEEEeccc
Confidence 1578888 555 357899999999999999988 8888888887 99999999999
Q ss_pred c-CCCCC--CCCCCCC--CcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCcccccc
Q 010538 253 G-CVTQP--PDLSKYP--VDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFE 327 (508)
Q Consensus 253 ~-~g~~~--~d~~~~~--~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (508)
+ ++..+ +++...+ .|++++| |+++++.++|++++++++++.+.+...+. .
T Consensus 216 ~~~~~~~~~~~~~~~~~~~d~~s~S--K~~~~g~~~G~~~~~~~~~~~~~~~~~~~-----------------------~ 270 (375)
T 2eh6_A 216 TGIGRTGEFYAYQHFNLKPDVIALA--KGLGGGVPIGAILAREEVAQSFTPGSHGS-----------------------T 270 (375)
T ss_dssp TTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSCCEEEEEEHHHHTTCCTTSCCC-----------------------S
T ss_pred cCCCCCCcchhhhhcCCCCCEEEEc--ccccCCCCeEEEEEcHHHHhhhcCCCCCC-----------------------C
Confidence 8 55433 3344445 7888555 98885556999999998877665531111 1
Q ss_pred CCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCC
Q 010538 328 DGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRP 407 (508)
Q Consensus 328 ~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 407 (508)
.++ +....+++.++++.+. .+.++++++++++.+.|+++. . ... +. .++++++.+++
T Consensus 271 ~~~-~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~l~~~L~~~~------~-~~~-~~--------~g~~~~~~~~~- 327 (375)
T 2eh6_A 271 FGG-NPLACRAGTVVVDEVE-----KLLPHVREVGNYFKEKLKELG------K-GKV-KG--------RGLMLGLELER- 327 (375)
T ss_dssp STT-CHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHTT------S-SEE-EE--------ETTEEEEECSS-
T ss_pred CCC-CHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHh------c-CCc-eE--------EEEEEEEEEcC-
Confidence 123 3344444455666543 678889999999999998862 2 111 11 16888888864
Q ss_pred CCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHH
Q 010538 408 DGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFED 487 (508)
Q Consensus 408 ~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ee 487 (508)
+. .++.+.|.++||.++++. ++++|+++++.+|.+|
T Consensus 328 ~~-----~~~~~~l~~~gi~~~~~~---------------------------------------~~~iRi~~~~~~~~~~ 363 (375)
T 2eh6_A 328 EC-----KDYVLKALEKGLLINCTA---------------------------------------GKVLRFLPPLIIQKEH 363 (375)
T ss_dssp CC-----HHHHHHHHHTTEECEEET---------------------------------------TTEEEECCCTTCCHHH
T ss_pred cH-----HHHHHHHHHCCCEEecCC---------------------------------------CCEEEEECCCCCCHHH
Confidence 22 347888888999987641 4789999999999999
Q ss_pred HHHHHHhhhhh
Q 010538 488 AKVNRCSSFDF 498 (508)
Q Consensus 488 v~~l~~~~~~~ 498 (508)
++++++.|+++
T Consensus 364 i~~~~~~l~~~ 374 (375)
T 2eh6_A 364 IDRAISVLREI 374 (375)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998865
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-25 Score=229.64 Aligned_cols=312 Identities=12% Similarity=0.035 Sum_probs=219.0
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHH-HHHHhcCCeEEEEccC
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIR-EYALSQGAAAFAIDVE 161 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~-~~~~~~G~~v~~v~~~ 161 (508)
.....++++.++++++.+ + .|++++| ++|+++++.++ .++|++|+++...|++..... ..++..|++++.+|.+
T Consensus 51 ~~~~~~l~~~la~~~~~~-~--~i~~~sG-t~a~~~~~~~~-~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 125 (386)
T 1cs1_A 51 NPTRDVVQRALAELEGGA-G--AVLTNTG-MSAIHLVTTVF-LKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQG 125 (386)
T ss_dssp CHHHHHHHHHHHHHHTCS-E--EEEESSH-HHHHHHHHHHH-CCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTT
T ss_pred CccHHHHHHHHHHHhCCC-c--EEEeCCH-HHHHHHHHHHH-hCCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeCCC
Confidence 455788999999999987 4 6777666 89999999998 678899999999998766644 3446679999998864
Q ss_pred CccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCC
Q 010538 162 EAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK 241 (508)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~ 241 (508)
|+++++ +++ .+++++|++++++|+||.+.|+++|.++|++
T Consensus 126 --------------------d~~~l~--~~i------~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~------------ 165 (386)
T 1cs1_A 126 --------------------DEQALR--AAL------AEKPKLVLVESPSNPLLRVVDIAKICHLARE------------ 165 (386)
T ss_dssp --------------------CHHHHH--HHH------HTCCSEEEEECSCTTTCCCCCHHHHHHHHHH------------
T ss_pred --------------------CHHHHH--Hhh------ccCCcEEEEeCCCCCCCcccCHHHHHHHHHH------------
Confidence 245555 333 3568999999999999999999999999998
Q ss_pred CCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCcc--eEEEEec-hhHhhhccccccCceEEecccchhhhhh
Q 010538 242 GRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGL--GALIMRN-DAAKLLKNTYFSGGTVAASIADIDFVKR 318 (508)
Q Consensus 242 ~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G~--G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~ 318 (508)
+|+++|+|++|+.+....++ ..++|+++.|+||++++|.+. |++++++ ++++.+.+...++
T Consensus 166 ~~~~li~De~~~~~~~~~~~-~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~--------------- 229 (386)
T 1cs1_A 166 VGAVSVVDNTFLSPALQNPL-ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNI--------------- 229 (386)
T ss_dssp TTCEEEEECTTTCTTTCCGG-GGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHH---------------
T ss_pred cCCEEEEECCCcccccCCcc-ccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhc---------------
Confidence 99999999999987765444 467999999999999878663 9999987 6766665442211
Q ss_pred ccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEe-cCCCCCc------
Q 010538 319 RQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIY-GTYTSEV------ 391 (508)
Q Consensus 319 ~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~-~~~~~~~------ 391 (508)
.++.+....++...++++ +....++..+..+++.+.|++++ .++-+ .+.-...
T Consensus 230 ---------~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~l~~~~------~l~~~~~~~l~~~~~~~~~ 289 (386)
T 1cs1_A 230 ---------GVTGGAFDSYLLLRGLRT-----LVPRMELAQRNAQAIVKYLQTQP------LVKKLYHPSLPENQGHEIA 289 (386)
T ss_dssp ---------TCBCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHTTCT------TEEEEECTTSTTSTTHHHH
T ss_pred ---------CCCCCHHHHHHHHhcccH-----HHHHHHHHHHHHHHHHHHHhcCC------CeEEEECCCCCCCccHHHH
Confidence 123344433333334432 34556667777888888887763 33222 1110000
Q ss_pred --ccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeecc---C------CCCCchHHHhhcCCChhhhhhhhhcCCcc
Q 010538 392 --SYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRT---G------CFCNPGACAKYLGLSHSDLLSNIEAGHVC 460 (508)
Q Consensus 392 --~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~---g------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 460 (508)
.....+++++|.+++. ...+.+.|.++||.++. | +.|..... ...+++.+.++|.
T Consensus 290 ~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~gi~~~~~~~g~~~sl~~~~~~~~~----~~~~~~~~~~~g~---- 355 (386)
T 1cs1_A 290 ARQQKGFGAMLSFELDGD------EQTLRRFLGGLSLFTLAESLGGVESLISHAATMTH----AGMAPEARAAAGI---- 355 (386)
T ss_dssp HHHCSSCCSEEEEEESSC------HHHHHHHHHTCSSSEEBSCCCSSSCEEEEGGGTTT----TTSCHHHHHHHTC----
T ss_pred HHhcCCCceEEEEEECCC------HHHHHHHHHhCCcceEcccCCCcceeeeccccccc----ccCCHHHHHhcCC----
Confidence 0012378999998642 23478889999999974 3 22222110 0023445555554
Q ss_pred CCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 461 WDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 461 ~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
.++.+|+|++..+++++++++.++++++.
T Consensus 356 ----------~~~~iRis~~~~~~~~~i~~l~~al~~~~ 384 (386)
T 1cs1_A 356 ----------SETLLRISTGIEDGEDLIADLENGFRAAN 384 (386)
T ss_dssp ----------CTTEEEEECCSSCHHHHHHHHHHHHHHHT
T ss_pred ----------CCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 25899999999999999999999987653
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.8e-25 Score=224.77 Aligned_cols=357 Identities=13% Similarity=0.050 Sum_probs=229.8
Q ss_pred CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCe
Q 010538 51 LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSS 130 (508)
Q Consensus 51 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~ 130 (508)
.+++.+++++.+.+ ...+ +. ......++++.++++++.+ ++++|+|+|+|+.+++.++..++|++
T Consensus 17 ~~~~~~~~a~~~~~-~~~~------~~----~~~~~~~l~~~la~~~~~~----~~~~~~~gt~al~~~~~~~~~~~gd~ 81 (393)
T 1mdo_A 17 AMGAEELAAVKTVL-DSGW------IT----TGPKNQELEAAFCRLTGNQ----YAVAVSSATAGMHIALMALGIGEGDE 81 (393)
T ss_dssp CCCHHHHHHHHHHH-HHTC------CS----SSHHHHHHHHHHHHHHCCS----EEEEESCHHHHHHHHHHHTTCCTTCE
T ss_pred CCCHHHHHHHHHHH-hcCC------cC----CChHHHHHHHHHHHHhCCC----cEEEecChHHHHHHHHHHcCCCCCCE
Confidence 35778877765543 2211 11 1245678999999999974 68999999999999999985678999
Q ss_pred EEEecccccchHHHHHHHHhcCCeEEEEccCCc-cCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeC
Q 010538 131 YMYTMENHNSVLGIREYALSQGAAAFAIDVEEA-VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPS 209 (508)
Q Consensus 131 vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~-~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~ 209 (508)
|+++...|+++... ++..|++++.+|.+.+ ..+ |+++++ +++ ++++++|+++
T Consensus 82 Vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~---------------d~~~l~--~~l------~~~~~~v~~~- 134 (393)
T 1mdo_A 82 VITPSMTWVSTLNM---IVLLGANPVMVDVDRDTLMV---------------TPEHIE--AAI------TPQTKAIIPV- 134 (393)
T ss_dssp EEEESSSCHHHHHH---HHHTTCEEEEECBCTTTCCB---------------CHHHHH--HHC------CTTEEEECCB-
T ss_pred EEeCCCccHhHHHH---HHHCCCEEEEEeccCCcCCC---------------CHHHHH--Hhc------CCCceEEEEe-
Confidence 99999888877644 4457999999998753 334 688888 555 3468888865
Q ss_pred CCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCC-CcEEEEecc--ccccCCCcceEE
Q 010538 210 ECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYP-VDFVVMSFY--KIFGYPTGLGAL 286 (508)
Q Consensus 210 ~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~-~D~~~~S~~--K~~g~P~G~G~l 286 (508)
+++|.+.|+++|.++|++ +|+++|+|++|+.|... +...++ .|++++|+| |+++ +...|++
T Consensus 135 --~~~G~~~~~~~i~~l~~~------------~~~~li~D~a~~~g~~~-~~~~~~~~d~~~~S~~k~K~l~-~~~~g~~ 198 (393)
T 1mdo_A 135 --HYAGAPADLDAIYALGER------------YGIPVIEDAAHATGTSY-KGRHIGARGTAIFSFHAIKNIT-CAEGGIV 198 (393)
T ss_dssp --CGGGCCCCHHHHHHHHHH------------HTCCBCEECTTCTTCEE-TTEETTSSSEEEEECCTTSSSC-SSSCEEE
T ss_pred --CCCCCcCCHHHHHHHHHH------------cCCeEEEECccccCCeE-CCeecCCCCeEEEeCCCCCccc-cccceEE
Confidence 479999999999999998 89999999999987543 222334 899999999 8888 4336888
Q ss_pred EEe-chhHhhhccccccCceEEecccchhhhhhccCcccccc---CCC-CChhHHHHHHHHHHHHHhcChHHHHHHHHHH
Q 010538 287 IMR-NDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFE---DGT-ASFLSIASIRHGFNLINSLTVPAICRHIASL 361 (508)
Q Consensus 287 ~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~gt-~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l 361 (508)
+.+ +++++.+.+....+.... . +..........++ .|+ .....+. ...++..+. +++++.++.+++
T Consensus 199 ~~~~~~~~~~l~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~g~~~~~~~~~-~a~~~~~l~--~~~~~~~~~~~~ 269 (393)
T 1mdo_A 199 VTDNPQFADKLRSLKFHGLGVD--A----WDRQSGGRAPQAEVLAPGYKYNLPDLN-AAIALAQLQ--KLDALNARRAAI 269 (393)
T ss_dssp EESCHHHHHHHHHHTBTTEECC-----------------CCEESSCCCBCCCCHHH-HHHHHHHHH--THHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHhcCCccc--c----hhhhcccccccccccccCccCCCCHHH-HHHHHHHHH--HHHHHHHHHHHH
Confidence 886 677776665433221100 0 0000000011121 232 1122222 122223322 367888888999
Q ss_pred HHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchH--H
Q 010538 362 GMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGA--C 439 (508)
Q Consensus 362 ~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~--~ 439 (508)
++++.+.|.++ ++++..++... ....+.++++.+++.. ...+..++.+.|.++||.+++|..|.... .
T Consensus 270 ~~~l~~~L~~~-------~~~~~~~~~~~--~~~~~~~~~v~~~~~~-~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~ 339 (393)
T 1mdo_A 270 AAQYHQAMADL-------PFQPLSLPSWE--HIHAWHLFIIRVDEAR-CGITRDALMASLKTKGIGTGLHFRAAHTQKYY 339 (393)
T ss_dssp HHHHHHHHHTS-------SCEECCCCSSC--EECCCSCEEEECCHHH-HSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHH
T ss_pred HHHHHHHHhcC-------CcccccCCCCC--CCceeEEEEEEecccc-cccCHHHHHHHHHhCCCCcccccCccccChhh
Confidence 99999999887 36665432100 0012467888886200 00234568899999999999988763211 0
Q ss_pred HhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 440 AKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 440 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
.. |.+...+...- ....+.+|++++.++|.+|+++++++|+++++
T Consensus 340 ~~--~~~~~~~~~~~--------------~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~ 384 (393)
T 1mdo_A 340 RE--RFPTLTLPDTE--------------WNSERICSLPLFPDMTESDFDRVITALHQIAG 384 (393)
T ss_dssp HH--HSTTCCCHHHH--------------HHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred hc--cCCccCChhHH--------------HHHhCEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 00 00000000000 00145899999999999999999999988764
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-24 Score=226.95 Aligned_cols=310 Identities=15% Similarity=0.118 Sum_probs=212.1
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEcCChHHHHH--HHHhhcCC--CC--------CCeEEEecccccchHHHHHHHHhcCC
Q 010538 86 VRAAREQVLDYFNASMKDYKCIFTSGATAALK--LVGEAFPW--SH--------QSSYMYTMENHNSVLGIREYALSQGA 153 (508)
Q Consensus 86 ~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~--~~~~~l~~--~~--------g~~vl~~~~~h~s~~~~~~~~~~~G~ 153 (508)
..++|+.+|++++++++ +|++|+|++++++ +++.++.. ++ |++|++....|+++.. .++..|.
T Consensus 72 ~~~lr~~ia~~~~~~~~--~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~---~~~~~g~ 146 (423)
T 3ez1_A 72 LPSARALFAGYLDVKAE--NVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFL---LLQTLGF 146 (423)
T ss_dssp CHHHHHHHHHHTTSCGG--GEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHH---HHHHHTC
T ss_pred hHHHHHHHHHHhCCChh--hEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHH---HHHHcCC
Confidence 56789999999999988 8999999999998 88888733 22 5899988766655544 4455699
Q ss_pred eEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEE-eCCCCCCccccCHHHHHHHHcCCcc
Q 010538 154 AAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAF-PSECNFSGSRFNLDLINIMKKNPER 232 (508)
Q Consensus 154 ~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~-~~~~n~tG~~~~i~~i~~l~~~~~~ 232 (508)
+++.+|.+.++ + |+++++ +++++ ++++++|++ ++++||||.++|.+++.++++
T Consensus 147 ~~~~v~~~~~g-~---------------d~~~l~--~~l~~----~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~---- 200 (423)
T 3ez1_A 147 ELLTVDMQSDG-P---------------DVDAVE--RLAGT----DPSVKGILFVPTYSNPGGETISLEKARRLAG---- 200 (423)
T ss_dssp EEEEEEEETTE-E---------------CHHHHH--HHHHS----CTTEEEEEECSSSCTTTCCCCCHHHHHHHHT----
T ss_pred EEEeccCCCCC-C---------------CHHHHH--HHHhh----CCCceEEEECCCCCCCCCcCCCHHHHHHHHH----
Confidence 99999987543 4 678888 55421 467898865 589999999999998888887
Q ss_pred ccccCCC-CCCCeEEEEeccccCCC-------CCCCC-------CCCCCcEEEEeccccccCC-CcceEEEEechhHhhh
Q 010538 233 ILEISPF-SKGRWMVLIDAAKGCVT-------QPPDL-------SKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLL 296 (508)
Q Consensus 233 ~~~~~~~-~~~g~~vivD~a~~~g~-------~~~d~-------~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l 296 (508)
+| +++|+++|+|++|+... .+.++ ...+.++++.|+||+++ | .++|++++++++++.+
T Consensus 201 -----~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~-~G~r~G~~~~~~~~~~~~ 274 (423)
T 3ez1_A 201 -----LQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITF-AGAGLGFVASSEDNIRWL 274 (423)
T ss_dssp -----CCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSC-SSSSCEEEEECHHHHHHH
T ss_pred -----HHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhcc-CCcceEEEEeCHHHHHHH
Confidence 67 78999999999998311 11222 13357799999999744 4 2489999999887766
Q ss_pred ccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHH-HH--hcChHHHHHHHHHHHHHHHHHHhc-c
Q 010538 297 KNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNL-IN--SLTVPAICRHIASLGMYVRKVLLS-L 372 (508)
Q Consensus 297 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~-~~--~~g~~~i~~~~~~l~~~l~~~L~~-l 372 (508)
...... ...+.+.....++..+++. .. ...++..++.+.+.++.+.+.|.+ +
T Consensus 275 ~~~~~~------------------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 330 (423)
T 3ez1_A 275 SKYLGA------------------------QSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAEL 330 (423)
T ss_dssp HHHHHH------------------------SCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhh------------------------hccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 543111 1122333434444434432 00 012344445555555555555433 1
Q ss_pred cCCCCCc-eEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeecc-CCCCCchHHHhhcCCChhhh
Q 010538 373 RHENGAD-VCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRT-GCFCNPGACAKYLGLSHSDL 450 (508)
Q Consensus 373 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~-g~~~~~~~~~~~~~~~~s~~ 450 (508)
+. .+ ++++..+.. +.++++.+++. +...+.+.|.++||.+++ |..|..+.
T Consensus 331 ~~---~~~~~~~~~p~~--------g~~~~~~~~~~-----~~~~~~~~l~~~gv~v~~~g~~~~~~~------------ 382 (423)
T 3ez1_A 331 GE---GGEYATWTLPKG--------GYFISLDTAEP-----VADRVVKLAEAAGVSLTPAGATYPAGQ------------ 382 (423)
T ss_dssp TT---TTSSEEECCCSB--------SSCEEEEESSS-----CHHHHHHHHHHTTEECCCTTTTSSTTC------------
T ss_pred Cc---CCCceEEeCCCc--------cEEEEEECCCC-----cHHHHHHHHHHCCcEEecCcccccCCC------------
Confidence 10 01 366665543 78899998754 234588899999999998 65554211
Q ss_pred hhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhh
Q 010538 451 LSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~ 503 (508)
...++++|||++.. |.++++++++.|.++++.+.
T Consensus 383 ------------------~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~ 416 (423)
T 3ez1_A 383 ------------------DPHNRNLRLAPTRP-PVEEVRTAMQVVAACIRLAT 416 (423)
T ss_dssp ------------------CSSSCEEEECCSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------CCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 01268999999866 99999999999999887653
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-25 Score=230.16 Aligned_cols=309 Identities=11% Similarity=0.038 Sum_probs=212.9
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEcCChHHHH--HHHHhhcCC--C---------CCCeEEEecccccchHHHHHHHHhcC
Q 010538 86 VRAAREQVLDYFNASMKDYKCIFTSGATAAL--KLVGEAFPW--S---------HQSSYMYTMENHNSVLGIREYALSQG 152 (508)
Q Consensus 86 ~~~~r~~la~~~~~~~~~~~i~~t~g~t~al--~~~~~~l~~--~---------~g~~vl~~~~~h~s~~~~~~~~~~~G 152 (508)
..++|+.+|++++++++ +|++|+|+++++ ++++.++.. + +|++|++....|+++ ...++..|
T Consensus 80 ~~~lr~~ia~~~~~~~~--~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~---~~~~~~~g 154 (427)
T 3ppl_A 80 IVDIRQIWADLLGVPVE--QVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRH---FSITERFG 154 (427)
T ss_dssp CHHHHHHHHHHHTSCGG--GEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHH---HHHHHHTT
T ss_pred cHHHHHHHHHHhCCCcc--eEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHH---HHHHHHcC
Confidence 57789999999999988 899999999999 588887732 2 289999887666554 44555679
Q ss_pred CeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEe-CCCCCCccccCHHHHHHHHcCCc
Q 010538 153 AAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFP-SECNFSGSRFNLDLINIMKKNPE 231 (508)
Q Consensus 153 ~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~-~~~n~tG~~~~i~~i~~l~~~~~ 231 (508)
.+++.+|++.++ + |+++++ +++. .+++++|++. +++||||.++|.+++.++++
T Consensus 155 ~~~~~v~~~~~g-~---------------d~~~l~--~~l~-----~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~--- 208 (427)
T 3ppl_A 155 FEMISVPMNEDG-P---------------DMDAVE--ELVK-----NPQVKGMWVVPVFSNPTGFTVTEDVAKRLSA--- 208 (427)
T ss_dssp CEEEEEEEETTE-E---------------CHHHHH--HHTT-----STTEEEEEECCSSCTTTCCCCCHHHHHHHHH---
T ss_pred CEEEEeCCCCCC-C---------------CHHHHH--HHHh-----cCCCeEEEECCCCCCCCCccCCHHHHHHHHH---
Confidence 999999987654 4 688888 5552 3578888764 89999999999998888877
Q ss_pred cccccCCC-CCCCeEEEEeccccC---CC---CCCCCC-------CCCCcEEEEeccccccCCC-cceEEEEechhHhhh
Q 010538 232 RILEISPF-SKGRWMVLIDAAKGC---VT---QPPDLS-------KYPVDFVVMSFYKIFGYPT-GLGALIMRNDAAKLL 296 (508)
Q Consensus 232 ~~~~~~~~-~~~g~~vivD~a~~~---g~---~~~d~~-------~~~~D~~~~S~~K~~g~P~-G~G~l~~~~~~~~~l 296 (508)
+| +++|++||+|++|+. +. .++++. ..+.++++.|+||+++ |+ ++|++++++++++.+
T Consensus 209 ------~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~G~r~G~~~~~~~l~~~~ 281 (427)
T 3ppl_A 209 ------METAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITL-AGAGVSFFLTSAENRKWY 281 (427)
T ss_dssp ------CCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSC-TTSSCEEEECCHHHHHHH
T ss_pred ------HHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhccC-cCccEEEEEcCHHHHHHH
Confidence 66 779999999999974 11 122321 3367899999999854 52 489999998887765
Q ss_pred ccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHH---HHhcChHHHHHHHHHHHHHHHHHHhccc
Q 010538 297 KNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNL---INSLTVPAICRHIASLGMYVRKVLLSLR 373 (508)
Q Consensus 297 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~---~~~~g~~~i~~~~~~l~~~l~~~L~~l~ 373 (508)
...... ...+.+.....++..+++. +.+ .++..++++.+.++++.+.|.+..
T Consensus 282 ~~~~~~------------------------~~~~~~~~~q~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~l 336 (427)
T 3ppl_A 282 TGHAGI------------------------RGIGPNKVNQLAHARYFGDAEGVRA-VMRKHAASLAPKFNKVLEILDSRL 336 (427)
T ss_dssp HHHHHH------------------------HCSCCCHHHHHHHHHHHCSHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhc------------------------ccCCCCHHHHHHHHHHHhChhhHHH-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 543110 1112233333333333331 111 245556666666666666664410
Q ss_pred CCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhh
Q 010538 374 HENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSN 453 (508)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~ 453 (508)
. ..+++++..|.. +.++++++++.+ ...+.+.|.++||.+++|..|.....
T Consensus 337 ~--~~~~~~~~~p~~--------g~~~~~~~~~~~-----~~~~~~~l~~~gv~v~~~g~~~~~~~-------------- 387 (427)
T 3ppl_A 337 A--EYGVAQWTVPAG--------GYFISLDVVPGT-----ASRVAELAKEAGIALTGAGSSYPLRQ-------------- 387 (427)
T ss_dssp G--GGTCCEECCCSB--------SSCEEEECSTTC-----HHHHHHHHHHTTEECCCTTTTSGGGC--------------
T ss_pred C--CCCceEEeCCCc--------cEEEEEECCcch-----HHHHHHHHHHCCCEEecCcCcCCCCC--------------
Confidence 0 001466655543 788999987642 34588889999999999554443210
Q ss_pred hhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 454 IEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
....+++|||++.. +.++++++++.|.++++.+
T Consensus 388 ---------------~~~~~~~Ris~~~~-~~~~i~~~~~~l~~~l~~~ 420 (427)
T 3ppl_A 388 ---------------DPENKNLRLAPSLP-PVEELEVAMDGVATCVLLA 420 (427)
T ss_dssp ---------------CTTSCEEEECCSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CCCCCeEEEECCCC-CHHHHHHHHHHHHHHHHHH
Confidence 01268999999765 9999999999999887654
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=223.78 Aligned_cols=358 Identities=13% Similarity=0.029 Sum_probs=229.9
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKL 118 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~ 118 (508)
++.+.|..+... +++.+.+++.+.+....+ . .......++++.++++++.+ ++++++|+|+|+.+
T Consensus 22 ~~~~~l~~~~p~-~~~~~~~a~~~~~~~~~~-------~---~~~~~~~~l~~~la~~~~~~----~~i~~~~gt~al~~ 86 (391)
T 3dr4_A 22 SDLPRISVAAPR-LDGNERDYVLECMDTTWI-------S---SVGRFIVEFEKAFADYCGVK----HAIACNNGTTALHL 86 (391)
T ss_dssp ------CCCCCC-CCSSHHHHHHHHHHHTCC-------S---SCSHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHH
T ss_pred CCCceeccCCCC-CCHHHHHHHHHHHHcCCc-------c---CCChHHHHHHHHHHHHhCCC----cEEEeCCHHHHHHH
Confidence 566777766554 466777776554432211 1 01245788999999999986 47889999999999
Q ss_pred HHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC-ccCccccccccccccccccchhhhhcCCCCCCCCC
Q 010538 119 VGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE-AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP 197 (508)
Q Consensus 119 ~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~ 197 (508)
++.++..++|++|+++...|+++...+ +..|++++.++.+. +..+ |+++++ +++
T Consensus 87 ~l~~~~~~~gd~vl~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~---------------d~~~l~--~~~----- 141 (391)
T 3dr4_A 87 ALVAMGIGPGDEVIVPSLTYIASANSV---TYCGATPVLVDNDPRTFNL---------------DAAKLE--ALI----- 141 (391)
T ss_dssp HHHHHTCCTTCEEEEESSSCTHHHHHH---HHTTCEEEEECBCTTTCSB---------------CGGGSG--GGC-----
T ss_pred HHHHcCCCCcCEEEECCCchHHHHHHH---HHCCCEEEEEecCccccCc---------------CHHHHH--Hhc-----
Confidence 999986678999999999998876554 45699999999873 3444 577888 554
Q ss_pred CCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCC--CCCCCcEEEEe--c
Q 010538 198 AGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDL--SKYPVDFVVMS--F 273 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~--~~~~~D~~~~S--~ 273 (508)
++++++|+ ++|+||...|+++|.++|++ +|+++|+|++|+.|....+. ... .|+.++| .
T Consensus 142 -~~~~~~v~---~~n~tG~~~~~~~i~~l~~~------------~~~~li~D~a~~~g~~~~~~~~~~~-~di~~~S~s~ 204 (391)
T 3dr4_A 142 -TPRTKAIM---PVHLYGQICDMDPILEVARR------------HNLLVIEDAAEAVGATYRGKKSGSL-GDCATFSFFG 204 (391)
T ss_dssp -CTTEEEEC---CBCGGGCCCCHHHHHHHHHH------------TTCEEEEECTTCTTCEETTEETTSS-SSEEEEECBT
T ss_pred -CCCceEEE---EECCCCChhhHHHHHHHHHH------------cCCEEEEECcccccceECCeeeccc-CCEEEEECCC
Confidence 45788887 45799999999999999998 99999999999987654442 222 2566666 6
Q ss_pred cccccCCCcceEEEEech-hHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChH
Q 010538 274 YKIFGYPTGLGALIMRND-AAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVP 352 (508)
Q Consensus 274 ~K~~g~P~G~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~ 352 (508)
||+++++ ..|+++.+++ +.+.+.+...++... . ..+. ....|. ++ .+..+.+++.+....+++
T Consensus 205 ~K~l~~g-~gg~~~~~~~~~~~~~~~~~~~g~~~----~-~~~~--------~~~~g~-~~-~~~~l~aa~~~~~~~~~~ 268 (391)
T 3dr4_A 205 NAIITTG-EGGMITTNDDDLAAKMRLLRGQGMDP----N-RRYW--------FPIVGF-NY-RMTNIQAAIGLAQLERVD 268 (391)
T ss_dssp TSSSCCB-SCEEEEESCHHHHHHHHHHHBTTCCT----T-STTC--------CSSCCC-BC-BCCHHHHHHHHHHHHTHH
T ss_pred CCcCCcC-CeEEEEECCHHHHHHHHHHHhcCCCC----C-Cccc--------cccccc-cc-CCCHHHHHHHHHHHHHHH
Confidence 6998843 3577777654 555555443322110 0 0000 000111 11 122333444444445678
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCceEEEecC--CCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeecc
Q 010538 353 AICRHIASLGMYVRKVLLSLRHENGADVCTIYGT--YTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRT 430 (508)
Q Consensus 353 ~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~ 430 (508)
++.++.+++++++.+.|+++ ++++..+ .... .....++++.+++.. ..+..++.+.|.++||.+++
T Consensus 269 ~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~~~~~---~~~~~~~~i~~~~~~--~~~~~~l~~~L~~~GI~v~~ 336 (391)
T 3dr4_A 269 EHLAARERVVGWYEQKLARL-------GNRVTKPHVALTG---RHVFWMYTVRLGEGL--STTRDQVIKDLDALGIESRP 336 (391)
T ss_dssp HHHHHHHHHHHHHHHHHGGG-------TTSEECCCCCTTS---CCCCSSEEEEECSSC--SSCHHHHHHHHHHTTCCCEE
T ss_pred HHHHHHHHHHHHHHHHhhcC-------CccccCcCCCCCC---cceeEEEEEEECCcc--chhHHHHHHHHHHCCCceee
Confidence 89999999999999999886 3555544 2210 112345677776421 14456789999999999998
Q ss_pred CC---CCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 431 GC---FCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 431 g~---~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
|. +|.+.... + ....+..+- ....+.+|++++.++|+|||+++++.|++++
T Consensus 337 ~~~p~~~~~~~~~--~--~~~~~~~~~--------------~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 337 VFHPMHIMPPYAH--L--ATDDLKIAE--------------ACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp CCCCGGGSGGGGG--G--CCTTCHHHH--------------HHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred cCCccccChhhhh--c--CcCCChHHH--------------HHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 85 33332110 0 000000000 0125789999999999999999999998764
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-25 Score=230.48 Aligned_cols=311 Identities=13% Similarity=-0.000 Sum_probs=210.3
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHH-HHHHhcCCeEEEEccCCc
Q 010538 85 IVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIR-EYALSQGAAAFAIDVEEA 163 (508)
Q Consensus 85 ~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~-~~~~~~G~~v~~v~~~~~ 163 (508)
...++++.+++++|.+ + .|++++| ++|+.+++. + .++|++|+++...|++..... ..++..|++++.+|.+
T Consensus 68 ~~~~l~~~la~~~g~~-~--~i~~~sG-~~ai~~~~~-l-~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-- 139 (403)
T 3cog_A 68 TRNCLEKAVAALDGAK-Y--CLAFASG-LAATVTITH-L-LKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCS-- 139 (403)
T ss_dssp HHHHHHHHHHHHHTCS-E--EEEESCH-HHHHHHHHT-T-SCTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTT--
T ss_pred hHHHHHHHHHHHhCCC-c--EEEECCH-HHHHHHHHH-H-hCCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCC--
Confidence 3677899999999987 4 6777766 589999998 6 688999999999998766543 3456679999999875
Q ss_pred cCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCC
Q 010538 164 VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGR 243 (508)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g 243 (508)
|+++++ +++ .++|++|++++++||||.+.|+++|.++|++ +|
T Consensus 140 ------------------d~~~l~--~~i------~~~t~~v~~~~p~nptG~~~~l~~i~~la~~------------~g 181 (403)
T 3cog_A 140 ------------------KIKLLE--AAI------TPETKLVWIETPTNPTQKVIDIEGCAHIVHK------------HG 181 (403)
T ss_dssp ------------------SHHHHH--HHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHTS------------SS
T ss_pred ------------------CHHHHH--Hhc------CcCCeEEEEECCCCCCCeeeCHHHHHHHHHH------------cC
Confidence 255666 444 4678999999999999999999999999998 89
Q ss_pred -eEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEe-chhHhhhccccccCceEEecccchhhhhhc
Q 010538 244 -WMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMR-NDAAKLLKNTYFSGGTVAASIADIDFVKRR 319 (508)
Q Consensus 244 -~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~ 319 (508)
+++++|++++.+.....+. .++|+++.|+||++++|.| .|+++++ +++.+.+.+...++
T Consensus 182 ~~~livD~~~~~~~~~~~~~-~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~---------------- 244 (403)
T 3cog_A 182 DIILVVDNTFMSPYFQRPLA-LGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSL---------------- 244 (403)
T ss_dssp CCEEEEECTTTCTTTCCTTT-TTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHH----------------
T ss_pred CCEEEEECCCcccccCCccc-cCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhc----------------
Confidence 9999999998875322222 5799999999999998876 4999996 56666655432211
Q ss_pred cCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccC--------CCCCceEEEecCCCCCc
Q 010538 320 QGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRH--------ENGADVCTIYGTYTSEV 391 (508)
Q Consensus 320 ~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~--------~~~~~~~~~~~~~~~~~ 391 (508)
.++.+....+++..+++.+ ....++..+.+..+.+.+++.+. ....|++++..+..
T Consensus 245 --------g~~~~~~~~~~~~~~l~~l-----~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~--- 308 (403)
T 3cog_A 245 --------GAVPSPIDCYLCNRGLKTL-----HVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQC--- 308 (403)
T ss_dssp --------CCCCCHHHHHHHHHHHTTH-----HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHC---
T ss_pred --------CCCCCHHHHHHHHhhhhHH-----HHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcC---
Confidence 1234444444444455432 33344444555555555554310 00112333332221
Q ss_pred ccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeecc---CC------CCCchHHHhhcCCChhhhhhhhhcCCccCC
Q 010538 392 SYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRT---GC------FCNPGACAKYLGLSHSDLLSNIEAGHVCWD 462 (508)
Q Consensus 392 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~---g~------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 462 (508)
...+++++|.+++.. ..+.+.|.+.||.++. |. +|+..... .-+++.+.++|.
T Consensus 309 --~~~g~~~~~~l~~~~------~~~~~~l~~~~i~~~~~s~G~~~sl~~~p~~~~~~----~~~~~~~~~~g~------ 370 (403)
T 3cog_A 309 --TGCTGMVTFYIKGTL------QHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHA----SVLKNDRDVLGI------ 370 (403)
T ss_dssp --SCCCSEEEEEESSCH------HHHHHHHHHCSSSEECSCCSSSSCEEECTTTTTTT----TSCHHHHHHHTC------
T ss_pred --CCCceEEEEEecCCH------HHHHHHHHhCCcceEccCCCCcceeeecccccccc----cCCHHHHHhcCC------
Confidence 123889999886421 2467788888996543 32 34322100 012233444543
Q ss_pred CccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 463 DNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 463 ~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
.++.||+|++..+++++|+.+.++++++++
T Consensus 371 --------~~~~iRlSvg~e~~~d~i~~l~~al~~~~~ 400 (403)
T 3cog_A 371 --------SDTLIRLSVGLEDEEDLLEDLDQALKAAHP 400 (403)
T ss_dssp --------CTTEEEEECCSSCHHHHHHHHHHHHHHHCC
T ss_pred --------CcCeEEEEeCCCCHHHHHHHHHHHHHHhhc
Confidence 268999999999999999999999887654
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.5e-25 Score=226.56 Aligned_cols=330 Identities=12% Similarity=0.068 Sum_probs=224.5
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|.+++ +++++.+.+++.+.+. . +......+ .....+++++.++++++++++ +|++|+|+
T Consensus 43 ~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~-~-~~~~~~~~-----~~~~~~~l~~~la~~~~~~~~--~v~~~~gg 113 (395)
T 1vef_A 43 EGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAE-T-LMAMPQTL-----PTPMRGEFYRTLTAILPPELN--RVFPVNSG 113 (395)
T ss_dssp TSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHH-H-CCCCCTTS-----CCHHHHHHHHHHHHTSCTTEE--EEEEESSH
T ss_pred CCCEEEEccCccccccCCCCCHHHHHHHHHHHH-h-CCCCcccc-----CCHHHHHHHHHHHHhcCCCcC--EEEEcCcH
Confidence 56778888543 5578888888766443 2 11111111 245678899999999998777 89999999
Q ss_pred HHHHHHHHhhcC-CCCCCeEEEeccccc-chHHHHHHHHhcCCeEE---EEccCCcc-Cccccccccccccccccchhhh
Q 010538 113 TAALKLVGEAFP-WSHQSSYMYTMENHN-SVLGIREYALSQGAAAF---AIDVEEAV-DNDGLSESLVTSTKISLLPIQR 186 (508)
Q Consensus 113 t~al~~~~~~l~-~~~g~~vl~~~~~h~-s~~~~~~~~~~~G~~v~---~v~~~~~~-~~~~l~~~~~~~~~~~~d~~~l 186 (508)
++|+.+++.++. +.+++.||+....|+ ++..+... .|.++. .+|+..+. .+. ..|++++
T Consensus 114 ~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~---~g~~~~~~~~~p~~~~~~~~~------------~~d~~~l 178 (395)
T 1vef_A 114 TEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSV---TWEPKYREPFLPLVEPVEFIP------------YNDVEAL 178 (395)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHT---CCCHHHHGGGCSCSSCEEEEC------------TTCHHHH
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhh---cCCcccccccCCCCCCeeEeC------------CCcHHHH
Confidence 999999988762 245677777766554 45444432 344311 11221110 000 0157788
Q ss_pred hcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecccc-CCCC----
Q 010538 187 RKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKG-CVTQ---- 257 (508)
Q Consensus 187 ~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~-~g~~---- 257 (508)
+ +++ ++++++|++++++|+||.+.| +++|.++|++ +|+++|+|++|+ ++..
T Consensus 179 ~--~~i------~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~------------~~~~li~Dea~~~~~~~g~~~ 238 (395)
T 1vef_A 179 K--RAV------DEETAAVILEPVQGEGGVRPATPEFLRAAREITQE------------KGALLILDEIQTGMGRTGKRF 238 (395)
T ss_dssp H--HHC------CTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHH------------HTCEEEEECTTTTTTTTSSSS
T ss_pred H--HHh------ccCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHH------------cCCEEEEEecccCCccCCchh
Confidence 8 555 357899999998999999998 8999999997 999999999998 3321
Q ss_pred CCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHH
Q 010538 258 PPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIA 337 (508)
Q Consensus 258 ~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~ 337 (508)
+++......|++ |+||+++++.++|++++++++++.+.+. +. ....+.+...++
T Consensus 239 ~~~~~~~~~d~~--s~sK~~~~g~~~G~~~~~~~~~~~l~~~---~~---------------------~~~~~~~~~~~~ 292 (395)
T 1vef_A 239 AFEHFGIVPDIL--TLAKALGGGVPLGVAVMREEVARSMPKG---GH---------------------GTTFGGNPLAMA 292 (395)
T ss_dssp THHHHTCCCSEE--EECGGGGTTSSCEEEEEEHHHHHTSCTT---SS---------------------CCSSTTCHHHHH
T ss_pred HhhhcCCCCCEE--EEcccccCCCceEEEEehHHHHhhhccC---Cc---------------------CCCcCCCHHHHH
Confidence 112223356876 6799988544599999999877665541 10 011245666777
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHH
Q 010538 338 SIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREV 417 (508)
Q Consensus 338 ~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l 417 (508)
++.++++.+.+ +.+.++++++++++.+.|+++.. +.+... ++ .++++++.+++. . .++
T Consensus 293 a~~~al~~~~~---~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~-~~--------~g~~~~~~~~~~-~-----~~l 350 (395)
T 1vef_A 293 AGVAAIRYLER---TRLWERAAELGPWFMEKLRAIPS----PKIREV-RG--------MGLMVGLELKEK-A-----APY 350 (395)
T ss_dssp HHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHTSCC----TTEEEE-EE--------ETTEEEEEESSC-S-----HHH
T ss_pred HHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHhhc----CceEEE-EE--------EEEEEEEEEcCh-H-----HHH
Confidence 77778887654 45678899999999999988631 112111 11 268899988642 1 347
Q ss_pred HHHHh-hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhh
Q 010538 418 EKLAS-LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 418 ~~~L~-~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~ 496 (508)
.+.|. ++||.++++. .+++|+++++.+|.+|++++++.|+
T Consensus 351 ~~~l~~~~gi~v~~~~---------------------------------------~~~iRi~~~~~~~~~~i~~~~~~l~ 391 (395)
T 1vef_A 351 IARLEKEHRVLALQAG---------------------------------------PTVIRFLPPLVIEKEDLERVVEAVR 391 (395)
T ss_dssp HHHHHHHHCEECEESS---------------------------------------TTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCeEEecCC---------------------------------------CCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 78887 8999988741 4789999999999999999999998
Q ss_pred hhh
Q 010538 497 DFV 499 (508)
Q Consensus 497 ~~~ 499 (508)
+++
T Consensus 392 ~~l 394 (395)
T 1vef_A 392 AVL 394 (395)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-24 Score=223.78 Aligned_cols=375 Identities=12% Similarity=0.019 Sum_probs=229.8
Q ss_pred CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCC
Q 010538 50 TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQS 129 (508)
Q Consensus 50 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~ 129 (508)
.++++.+++++.+.+....+.+ .....+ ...+.+++++.+++++|++ ++++++|+|+|+.+++.++..++|+
T Consensus 12 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~g--~~~l~~~l~~~la~~~g~~----~~i~~~~gt~al~~~~~~~~~~~gd 83 (418)
T 2c81_A 12 PQHSDRTRRKIEEVFQSNRWAI--SGYWTG--EESMERKFAKAFADFNGVP----YCVPTTSGSTALMLALEALGIGEGD 83 (418)
T ss_dssp SCCCHHHHHHHHHHHHHTCCST--TSBCCS--SCCHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHTTCCTTC
T ss_pred CCCCHHHHHHHHHHHhcCCccc--cCcccC--CHHHHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHcCCCCcC
Confidence 3457888888766443221110 111112 2455788999999999986 3567777899999999998557889
Q ss_pred eEEEecccccchHHHHHHHHhcCCeEEEEccCC-ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEe
Q 010538 130 SYMYTMENHNSVLGIREYALSQGAAAFAIDVEE-AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFP 208 (508)
Q Consensus 130 ~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~ 208 (508)
+|+++...|+++...+ +..|++++.+|.+. +..+ |+++++ +++ ++++++|+++
T Consensus 84 ~Vl~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~---------------d~~~l~--~~i------~~~~~~v~~~ 137 (418)
T 2c81_A 84 EVIVPSLTWIATATAV---LNVNALPVFVDVEADTYCI---------------DPQLIK--SAI------TDKTKAIIPV 137 (418)
T ss_dssp EEEEESSSCTHHHHHH---HHTTCEEEEECBCTTTCSB---------------CHHHHG--GGC------CTTEEEECCB
T ss_pred EEEECCCccHhHHHHH---HHcCCEEEEEecCCCCCCc---------------CHHHHH--Hhh------CCCCeEEEEe
Confidence 9999999998876554 45699999999875 3444 688888 555 4578888754
Q ss_pred CCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC-C-CCCCCCCCcEEEEec--cccccCCCcce
Q 010538 209 SECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ-P-PDLSKYPVDFVVMSF--YKIFGYPTGLG 284 (508)
Q Consensus 209 ~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~-~-~d~~~~~~D~~~~S~--~K~~g~P~G~G 284 (508)
|+||...|+++|.++|++ +|+++|+|++|+.+.. . ..+... .|+.+.|+ ||+++ +...|
T Consensus 138 ---~~~G~~~~~~~i~~~~~~------------~~~~li~D~a~~~~~~~~~~~~~~~-~~~~~~s~s~~K~~~-~g~~g 200 (418)
T 2c81_A 138 ---HLFGSMANMDEINEIAQE------------HNLFVIEDCAQSHGSVWNNQRAGTI-GDIGAFSCQQGKVLT-AGEGG 200 (418)
T ss_dssp ---CCTTCCCCHHHHHHHHHH------------TTCEEEEECTTCTTCEETTEETTSS-SSEEEEECCTTSSSC-SSSCE
T ss_pred ---CCcCCcccHHHHHHHHHH------------CCCEEEEECcccccCccCCEecccc-cceEEEeccCCcccC-CCCeE
Confidence 589999999999999998 9999999999998763 1 112222 24555555 99999 63368
Q ss_pred EEEEe-chhHhhhccccccCceEEecccchhhhhhccCcccccc--CCCCChhH----HHHHHHHHHHHHhcChHHHHHH
Q 010538 285 ALIMR-NDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFE--DGTASFLS----IASIRHGFNLINSLTVPAICRH 357 (508)
Q Consensus 285 ~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~gt~~~~~----~~~l~~al~~~~~~g~~~i~~~ 357 (508)
+++.+ +++++.+.+....+....... . .....+. .++++..+ +-.+.+++......+++.+.++
T Consensus 201 ~~~~~~~~l~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~ 271 (418)
T 2c81_A 201 IIVTKNPRLFELIQQLRADSRVYCDDS----S-----ELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQELDDKNAI 271 (418)
T ss_dssp EEEESCHHHHHHHHHHHBTTEEECSCG----G-----GCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHhCccccccc----c-----ccccchhhccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 88885 566666665433322110000 0 0011111 11111111 1112223322222357888899
Q ss_pred HHHHHHHHHHHHhcccCCCCCceEEEecCCC--CCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhC-CCe---eccC
Q 010538 358 IASLGMYVRKVLLSLRHENGADVCTIYGTYT--SEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLS-GIQ---LRTG 431 (508)
Q Consensus 358 ~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~-gI~---v~~g 431 (508)
.+++++++.+.|.++ +++++..++. .. ...+++.+.+++.....++..++.+.|.++ ||. ++.|
T Consensus 272 ~~~~~~~l~~~L~~~------~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~ 341 (418)
T 2c81_A 272 REKNAMFLNDALSKI------DGIKVMKRPPQVSR----QTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPP 341 (418)
T ss_dssp HHHHHHHHHHHHTTS------TTEEECCCCTTEEE----CCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECC
T ss_pred HHHHHHHHHHHhccC------CCcccCCCCCCCcc----cccEEEEEEEccccccccCHHHHHHHHHHcCCCCccccccc
Confidence 999999999999887 4788875432 10 012466677763100013445688899888 999 9888
Q ss_pred CCCCchHHHhh---cCCCh----hhh-hhhhhcCCccCCCccccCCCCCceEEEecCCCC-CHHHHHHHHHhhhhhhhh
Q 010538 432 CFCNPGACAKY---LGLSH----SDL-LSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMS-TFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 432 ~~~~~~~~~~~---~~~~~----s~~-~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~-t~eev~~l~~~~~~~~~~ 501 (508)
..|.... +. ++... ++. ++.+..+ .|.. -.....+.||++++.++ |.|||++++++|+++++.
T Consensus 342 ~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~ 413 (418)
T 2c81_A 342 YLPVHKN--PLFCPWTKNRYLKSVRKTEAYWRGL-HYPV----SERASGQSIVIHHAILLAEPSHLSLLVDAVAELARK 413 (418)
T ss_dssp CCCGGGC--TTCCGGGCTTSCHHHHCCHHHHHTC-CCHH----HHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHT
T ss_pred ccccccC--chhcccccccccccccccccccccC-CChH----HHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHh
Confidence 6432110 00 00000 000 0000000 0000 00001368999999999 999999999999988764
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=224.00 Aligned_cols=354 Identities=12% Similarity=0.053 Sum_probs=227.1
Q ss_pred CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeE
Q 010538 52 YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSY 131 (508)
Q Consensus 52 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~v 131 (508)
+++.+.+++.+.+... + ..+. .....+++++.+++++|.+ + .|++++| |+|+++++.++..++|++|
T Consensus 15 ~~~~~~~a~~~~l~~~---~--~~~~----~~~~~~~l~~~la~~~~~~-~--~i~~~sG-t~al~~~l~~l~~~~gd~V 81 (388)
T 1b9h_A 15 YDDAERNGLVRALEQG---Q--WWRM----GGDEVNSFEREFAAHHGAA-H--ALAVTNG-THALELALQVMGVGPGTEV 81 (388)
T ss_dssp CCHHHHHHHHHHHHTS---C--CBTT----TCSHHHHHHHHHHHHTTCS-E--EEEESCH-HHHHHHHHHHTTCCTTCEE
T ss_pred CCHHHHHHHHHHHHcC---C--eeec----CCHHHHHHHHHHHHHhCCC-e--EEEeCCH-HHHHHHHHHHcCCCCcCEE
Confidence 4578888776644321 1 1111 1245778999999999986 3 6777766 8999999999855788999
Q ss_pred EEecccccchHHHHHHHHhcCCeEEEEccCCc-cCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCC
Q 010538 132 MYTMENHNSVLGIREYALSQGAAAFAIDVEEA-VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSE 210 (508)
Q Consensus 132 l~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~-~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~ 210 (508)
+++..+|+++.... +..|++++.++++.+ +.+ |+++++ +++ +++|++|+ +
T Consensus 82 i~~~~~~~~~~~~~---~~~g~~~~~v~~~~~~~~~---------------d~~~l~--~~i------~~~~~~v~---~ 132 (388)
T 1b9h_A 82 IVPAFTFISSSQAA---QRLGAVTVPVDVDAATYNL---------------DPEAVA--AAV------TPRTKVIM---P 132 (388)
T ss_dssp EEESSSCTHHHHHH---HHTTCEEEEECBCTTTCCB---------------CHHHHH--HHC------CTTEEEEC---C
T ss_pred EECCCccHHHHHHH---HHcCCEEEEEecCCCcCCC---------------CHHHHH--Hhc------CcCceEEE---E
Confidence 99999998876544 456999999998753 444 688888 555 45678877 7
Q ss_pred CCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCC--CCCCCCC-CcEEEEeccccccCCCcceEEE
Q 010538 211 CNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQP--PDLSKYP-VDFVVMSFYKIFGYPTGLGALI 287 (508)
Q Consensus 211 ~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~--~d~~~~~-~D~~~~S~~K~~g~P~G~G~l~ 287 (508)
+|+||.+.|+++|.++|++ +|+++|+|++|+.|..+ .++..++ +++.++|.||+++++. .|+++
T Consensus 133 ~n~tG~~~~l~~i~~la~~------------~~~~li~D~a~~~g~~~~~~~~~~~~~i~~~S~s~~K~l~g~~-~G~~~ 199 (388)
T 1b9h_A 133 VHMAGLMADMDALAKISAD------------TGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQNGKLMTAGE-GGAVV 199 (388)
T ss_dssp BCGGGCCCCHHHHHHHHHH------------HTCCBCEECTTCTTCEETTEEGGGSSSCEEEECCTTSSSCSSS-CEEEE
T ss_pred eCCccCcCCHHHHHHHHHH------------cCCEEEEecchhcCCccCCeecccccceEEEEccCCCcccCCC-eEEEE
Confidence 8999999999999999998 89999999999987654 3344444 4555555668887454 59998
Q ss_pred Eech-h--HhhhccccccCceEEecccchhhhhhccCcccc---ccCCC---CChhHHHHHHHHHHHHHhcChHHHHHHH
Q 010538 288 MRND-A--AKLLKNTYFSGGTVAASIADIDFVKRRQGVEEL---FEDGT---ASFLSIASIRHGFNLINSLTVPAICRHI 358 (508)
Q Consensus 288 ~~~~-~--~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~gt---~~~~~~~~l~~al~~~~~~g~~~i~~~~ 358 (508)
.+++ + ++.+.... +.+.. ..... ...|+ ++....+++..+++ .+++..++.
T Consensus 200 ~~~~~~~~~~~~~~~~-~~~~~--------------~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~-----~l~~~~~~~ 259 (388)
T 1b9h_A 200 FPDGETEKYETAFLRH-SCGRP--------------RDDRRYFHKIAGSNMRLNEFSASVLRAQLA-----RLDEQIAVR 259 (388)
T ss_dssp ECTTCHHHHHHHHHHT-BTTCC--------------TTCSSCCCCSCCCBCBCBHHHHHHHHHHHT-----THHHHHHHH
T ss_pred ECCHHHHHHHHHHHHH-hCCCC--------------ccCccceeecccccCCcCHHHHHHHHHHHH-----HHHHHHHHH
Confidence 8876 4 34443221 11100 00011 12233 33333333333322 256677888
Q ss_pred HHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchH
Q 010538 359 ASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGA 438 (508)
Q Consensus 359 ~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~ 438 (508)
+++++++.+.|+++ +++++..+.... ....++++++.+++..+ .+..++.+.|.++||.++.+.......
T Consensus 260 ~~~~~~l~~~L~~~------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~l~~~L~~~gI~v~~~~~~~~~~ 329 (388)
T 1b9h_A 260 DERWTLLSRLLGAI------DGVVPQGGDVRA--DRNSHYMAMFRIPGLTE--ERRNALVDRLVEAGLPAFAAFRAIYRT 329 (388)
T ss_dssp HHHHHHHHHHHHTS------TTCEECCCCTTC--CBCCCSEEEEECTTCCH--HHHHHHHHHHHHTTCCEEECCCCGGGS
T ss_pred HHHHHHHHHHhccC------CCccccCCCcCC--CccceEEEEEEeCCcCc--ccHHHHHHHHHHCCCCcccccCccccC
Confidence 89999999999987 368777542100 00126889999865310 123458888989999998865321100
Q ss_pred -HHhhcCCCh---hhhhhhhhcCCccCCCccccCCCCCceEEEecCCCC-CHHHHHHHHHhhhhhhh
Q 010538 439 -CAKYLGLSH---SDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMS-TFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 439 -~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~-t~eev~~l~~~~~~~~~ 500 (508)
....+|.+. ..+..+|+.. .....+.+|++++..+ |++||+++++.|+++++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~~~ 386 (388)
T 1b9h_A 330 DAFWELGAPDESVDAIARRCPNT----------DAISSDCVWLHHRVLLAGEPELHATAEIIADAVA 386 (388)
T ss_dssp HHHHHSSCCSSCHHHHHHTCHHH----------HHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHH
T ss_pred hHhHhcCCCcccccccccCCHHH----------HHHHhCeEEecCCCCCCCHHHHHHHHHHHHHHHh
Confidence 000011100 0000011110 0012468999999999 99999999999998765
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-25 Score=234.09 Aligned_cols=303 Identities=11% Similarity=0.070 Sum_probs=219.3
Q ss_pred HHHHHHHHHHHc-----CCCCCCce---EEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHh-cCCeEE
Q 010538 86 VRAAREQVLDYF-----NASMKDYK---CIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALS-QGAAAF 156 (508)
Q Consensus 86 ~~~~r~~la~~~-----~~~~~~~~---i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~-~G~~v~ 156 (508)
..++++.+++++ +++++ + |++|+|+++|+++++.++ .++|++|+++...|+++. ..++. .|.+++
T Consensus 90 ~~~lr~~ia~~~~~~~~~~~~~--~~~~i~~t~g~~~al~~~~~~l-~~~gd~Vl~~~p~y~~~~---~~~~~~~g~~~~ 163 (430)
T 2x5f_A 90 IEELRDLWQQKMLRDNPELSID--NMSRPIVTNALTHGLSLVGDLF-VNQDDTILLPEHNWGNYK---LVFNTRNGANLQ 163 (430)
T ss_dssp CHHHHHHHHHHHHHHCTTCCGG--GBCCCEEESHHHHHHHHHHHHH-CCTTCEEEEESSCCTHHH---HHHTTTTCCEEE
T ss_pred CHHHHHHHHHHHhccCcccCCC--ccceEEEcCCchHHHHHHHHHH-hCCCCEEEEcCCcCccHH---HHHHHhcCCeEE
Confidence 466788888888 88887 8 999999999999999998 678899999887666554 44555 799999
Q ss_pred EEccCC-ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccc
Q 010538 157 AIDVEE-AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILE 235 (508)
Q Consensus 157 ~v~~~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~ 235 (508)
.+|.+. +..+ |+++++ +++++ ..++++++++++++||||.++|.+.+.++++
T Consensus 164 ~~~~~~~~~~~---------------d~~~l~--~~l~~---~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~------- 216 (430)
T 2x5f_A 164 TYPIFDKDGHY---------------TTDSLV--EALQS---YNKDKVIMILNYPNNPTGYTPTHKEVTTIVE------- 216 (430)
T ss_dssp EECCBCTTSCB---------------CSHHHH--HHHHH---CCSSEEEEEECSSCTTTCCCCCHHHHHHHHH-------
T ss_pred EEeccCccCCc---------------CHHHHH--HHHHh---cCCCCEEEEEcCCCCCCCCcCCHHHHHHHHH-------
Confidence 999865 2233 567777 54421 1237899999999999999999777766666
Q ss_pred cCCCCC-----CCeEEEEeccccCCCC----CC----CCCC-CCC---cEEEEeccccccCCCc--ceEEEE---echhH
Q 010538 236 ISPFSK-----GRWMVLIDAAKGCVTQ----PP----DLSK-YPV---DFVVMSFYKIFGYPTG--LGALIM---RNDAA 293 (508)
Q Consensus 236 ~~~~~~-----~g~~vivD~a~~~g~~----~~----d~~~-~~~---D~~~~S~~K~~g~P~G--~G~l~~---~~~~~ 293 (508)
+|++ +|+++|+|++|+.... .. ++.. .+. ++++.|+||++| ++| +|++++ +++++
T Consensus 217 --~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~riG~~~~~~~~~~~~ 293 (430)
T 2x5f_A 217 --AIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFF-AWGFRVGFMTFGTSDQTTK 293 (430)
T ss_dssp --HHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTT-CGGGCCEEEEEBCCCHHHH
T ss_pred --HHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCC-CCCCCeEEEEEecCCHHHH
Confidence 5667 8999999999975321 11 2222 345 788999999998 557 799999 88887
Q ss_pred hhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHH----HHHhcChHHHHHHHHHHHHHHHHHH
Q 010538 294 KLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFN----LINSLTVPAICRHIASLGMYVRKVL 369 (508)
Q Consensus 294 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~----~~~~~g~~~i~~~~~~l~~~l~~~L 369 (508)
+.+...... ..+...++++....+++.++++ +... ++.+++++.++++++.+.|
T Consensus 294 ~~l~~~~~~--------------------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~L 351 (430)
T 2x5f_A 294 EVLEAKVKG--------------------LIRSNISSGPLPTQSAVKHVLKNNKQFDKE--IEQNIQTLKERYEVTKEVV 351 (430)
T ss_dssp HHHHHHHHH--------------------HHHTTTSSCCHHHHHHHHHHHHSCHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhh--------------------hhhcccCCCChHHHHHHHHHHccChHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 766543110 0011234566676777777776 3332 4668899999999999999
Q ss_pred hcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhh-CCCeeccCCCCCchHHHhhcCCChh
Q 010538 370 LSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASL-SGIQLRTGCFCNPGACAKYLGLSHS 448 (508)
Q Consensus 370 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~-~gI~v~~g~~~~~~~~~~~~~~~~s 448 (508)
++... ..++++..+.. +.++++.+++ .+..++.+.|.+ +||.+++|.
T Consensus 352 ~~~~~---~~g~~~~~~~~--------g~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~---------------- 399 (430)
T 2x5f_A 352 YADQY---HSHWQAYDFNS--------GYFMAIKVHD-----VDPEALRKHLIDKYSIGVIALN---------------- 399 (430)
T ss_dssp TCGGG---TTTEEECCCCB--------SSEEEEEESS-----SCHHHHHHHHHHHHCEECEECS----------------
T ss_pred HhhCC---CCCceeeCCCc--------eEEEEeCCCC-----CCHHHHHHHHHHhCCEEEecCC----------------
Confidence 83200 01577765432 5668888862 234567788876 999998861
Q ss_pred hhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 449 DLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
.+++|||++. ++.++++++++.|+++++.+
T Consensus 400 -----------------------~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~ 429 (430)
T 2x5f_A 400 -----------------------ATDIRIAFSC-VEKDDIPHVFDSIAKAIDDL 429 (430)
T ss_dssp -----------------------SSEEEEEGGG-SCGGGHHHHHHHHHHHHHHH
T ss_pred -----------------------CCeEEEEEec-CCHHHHHHHHHHHHHHHHhc
Confidence 5789999995 59999999999999887643
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.9e-25 Score=241.88 Aligned_cols=324 Identities=12% Similarity=0.029 Sum_probs=229.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA 163 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~ 163 (508)
..+.++++.+|+++|++. .+++++|+|+|+.+++.++ .++|++||++...|+++... .+...|++++.++.+.+
T Consensus 173 ~~i~e~e~~lA~~~gae~---~i~v~nGtt~an~~ai~al-~~pGD~VLv~~~~H~S~~~~--~~~l~Ga~~v~v~~~~~ 246 (730)
T 1c4k_A 173 GPAVAAEKHAARVYNADK---TYFVLGGSSNANNTVTSAL-VSNGDLVLFDRNNHKSVYNS--ALAMAGGRPVYLQTNRN 246 (730)
T ss_dssp THHHHHHHHHHHHTTCSE---EEEESSHHHHHHHHHHHHH-CCTTCEEEEETTCCHHHHHH--HTTTTCCEEEEECEEEC
T ss_pred HHHHHHHHHHHHHHCCCc---EEEECCHHHHHHHHHHHHh-cCCCCEEEEcCCchHHHHHH--HHHHCCCEEEEEeCCcc
Confidence 457889999999999974 4888999999999999998 68899999999999988765 13346999998876432
Q ss_pred -----cCccccccccccccccccchhhh-----hcCCCCCCCCCC---CCCc-eEEEEeCCCCCCccccCHHHHHHHHcC
Q 010538 164 -----VDNDGLSESLVTSTKISLLPIQR-----RKGASFPERDPA---GDAY-NLFAFPSECNFSGSRFNLDLINIMKKN 229 (508)
Q Consensus 164 -----~~~~~l~~~~~~~~~~~~d~~~l-----~~~~~l~~~~~~---~~~t-~lv~~~~~~n~tG~~~~i~~i~~l~~~ 229 (508)
+.+ |++++ + +++.++... .+++ ++++++++ |++|.+.|+++|.++|++
T Consensus 247 ~~~i~g~i---------------d~e~L~~~~le--~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~ 308 (730)
T 1c4k_A 247 PYGFIGGI---------------YDSDFDEKKIR--ELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGH 308 (730)
T ss_dssp TTCCEEEE---------------CGGGSCHHHHH--HHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGG
T ss_pred ccCccCCC---------------CHHHHhhhHHH--HHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHH
Confidence 112 45566 7 555421000 1112 88999987 689999999999999998
Q ss_pred CccccccCCCCCCCeEEEEeccccCC---------CCCCCCCCCCCc----EEEEeccccccCCCcceEEEEechhHhhh
Q 010538 230 PERILEISPFSKGRWMVLIDAAKGCV---------TQPPDLSKYPVD----FVVMSFYKIFGYPTGLGALIMRNDAAKLL 296 (508)
Q Consensus 230 ~~~~~~~~~~~~~g~~vivD~a~~~g---------~~~~d~~~~~~D----~~~~S~~K~~g~P~G~G~l~~~~~~~~~l 296 (508)
+|+++++|++|+.+ ..+++...+++| +++.|+||++++|.+.|+++++++.+..-
T Consensus 309 ------------~g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g~ 376 (730)
T 1c4k_A 309 ------------LCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQ 376 (730)
T ss_dssp ------------GBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTS
T ss_pred ------------cCCeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhcCc
Confidence 89999999999642 123455455788 99999999988787778998988764110
Q ss_pred ccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhc-ccCC
Q 010538 297 KNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLS-LRHE 375 (508)
Q Consensus 297 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~-l~~~ 375 (508)
...+ +...+. .....+..+++++..++++.+|++++...+..+..+++.++++++++.|++ +
T Consensus 377 ~~~i----------~~~~~~----~~~~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i--- 439 (730)
T 1c4k_A 377 LRYC----------DHKHFN----NSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAG--- 439 (730)
T ss_dssp TTCC----------CHHHHH----HHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred cccc----------CHHHHH----HHHHHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhC---
Confidence 0000 000111 012345578899999999999999876633456678899999999999988 5
Q ss_pred CCCceEEEecCCCCC--------------------cc--------cCC-CC------ceEEEEeeCC-------CCCccC
Q 010538 376 NGADVCTIYGTYTSE--------------------VS--------YHD-TG------SMVSFNLKRP-------DGSWFG 413 (508)
Q Consensus 376 ~~~~~~~~~~~~~~~--------------------~~--------~~~-~~------~~v~~~~~~~-------~~~~~~ 413 (508)
++++++.+.... .. ... .+ ..++|..++. ....++
T Consensus 440 ---~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~ 516 (730)
T 1c4k_A 440 ---SMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVP 516 (730)
T ss_dssp ---CSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCC
T ss_pred ---CCeEEccccccccccccccccccccccchhhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCC
Confidence 368887653200 00 000 01 1156766431 112245
Q ss_pred HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHH
Q 010538 414 YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRC 493 (508)
Q Consensus 414 ~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~ 493 (508)
...+.+.|.++||.+... ..+.+|++++.++|.+++++|++
T Consensus 517 ~~~l~~~L~e~GI~v~~~---------------------------------------~~~~ir~~~s~g~t~e~i~~Ll~ 557 (730)
T 1c4k_A 517 ATIVANYLRDHGIIPEKS---------------------------------------DLNSILFLMTPAETPAKMNNLIT 557 (730)
T ss_dssp HHHHHHHHHHTTCCCSEE---------------------------------------CSSEEEEECCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCcEEEEC---------------------------------------CCCeEEEEeCCCCCHHHHHHHHH
Confidence 667999999999987542 14689999999999999999999
Q ss_pred hhhhhhhhh
Q 010538 494 SSFDFVNFS 502 (508)
Q Consensus 494 ~~~~~~~~~ 502 (508)
+|.++.+..
T Consensus 558 aL~~i~~~~ 566 (730)
T 1c4k_A 558 QLLQLQRLI 566 (730)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999887543
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-25 Score=230.90 Aligned_cols=342 Identities=14% Similarity=0.053 Sum_probs=222.3
Q ss_pred CCCCCCCHHHHHHHHHHhhcccc--CCCCCccchhhh-hhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhc
Q 010538 47 AGATLYSELQMEAIFRDFTTNVY--GNPHSQSDISLA-TCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAF 123 (508)
Q Consensus 47 ~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l 123 (508)
++..+++|.+++++.+.+ .+.+ ++|.+.+..+.. .....+.+++++++++|++++ .|++++| ++|+.+++.++
T Consensus 37 ~~~n~~~~~v~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~v~~~sG-s~a~~~a~~~~ 112 (420)
T 3gbx_A 37 ASENYTSPRVMQAQGSQL-TNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYA--NVQPHSG-SQANFAVYTAL 112 (420)
T ss_dssp TTCCCCCHHHHHHHTSGG-GGCCC--------------CHHHHHHHHHHHHHHHTCSEE--ECCCSSH-HHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHH-hcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCc--eeEecCc-HHHHHHHHHHh
Confidence 334456888988875543 2223 455543332222 234455688999999999876 6666665 78999999988
Q ss_pred CCCCCCeEEEecccccchHH-HHHH-HHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCC
Q 010538 124 PWSHQSSYMYTMENHNSVLG-IREY-ALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDA 201 (508)
Q Consensus 124 ~~~~g~~vl~~~~~h~s~~~-~~~~-~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~ 201 (508)
.++|++|++....|+++.. +... ....+..+..++.+.++.+ |+++++ +++.+ .+
T Consensus 113 -~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---------------d~~~l~--~~i~~-----~~ 169 (420)
T 3gbx_A 113 -LQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKI---------------DYDEMA--KLAKE-----HK 169 (420)
T ss_dssp -CCTTCEEEEEEEC------------CHHHHSEEEEEEECTTCSC---------------CHHHHH--HHHHH-----HC
T ss_pred -cCCCCEEEecchhhcceeccchhhhhcccceeEEeccCCccCCc---------------CHHHHH--HHHHh-----cC
Confidence 6889999999988887442 2111 1112345555566544444 577887 55421 25
Q ss_pred ceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC-----CCCCCCCCCcEEEEecccc
Q 010538 202 YNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ-----PPDLSKYPVDFVVMSFYKI 276 (508)
Q Consensus 202 t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~-----~~d~~~~~~D~~~~S~~K~ 276 (508)
+++|++++++|+ ...|+++|.++|++ +|+++|+|++|+.|.. +..+. .+|++++|+||+
T Consensus 170 ~~~v~~~~~~~~--~~~~l~~l~~l~~~------------~~~~li~De~~~~~~~~~~~~~~~~~--~~di~~~s~sK~ 233 (420)
T 3gbx_A 170 PKMIIGGFSAYS--GVVDWAKMREIADS------------IGAYLFVDMAHVAGLIAAGVYPNPVP--HAHVVTTTTHKT 233 (420)
T ss_dssp CSEEEECCTTCC--SCCCHHHHHHHHHH------------TTCEEEEECTTTHHHHHTTSSCCSTT--TSSEEEEESSGG
T ss_pred CeEEEEecCccC--CccCHHHHHHHHHH------------cCCEEEEECCcchhceecccCCcccc--cCCEEEeecccC
Confidence 799998877764 58999999999998 9999999999875432 33333 389999999999
Q ss_pred ccCCCcceEEEEec---hhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHH
Q 010538 277 FGYPTGLGALIMRN---DAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPA 353 (508)
Q Consensus 277 ~g~P~G~G~l~~~~---~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~ 353 (508)
++||.| |+++.++ ++.+.+.+..+.+ ..++++...++++..++..+.+.++++
T Consensus 234 ~~g~~g-g~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~a~~~a~~~~~~~~~~~ 289 (420)
T 3gbx_A 234 LAGPRG-GLILAKGGDEELYKKLNSAVFPS-----------------------AQGGPLMHVIAGKAVALKEAMEPEFKV 289 (420)
T ss_dssp GCSCSC-EEEEESSCCHHHHHHHHHHHC---------------------------CCCCHHHHHHHHHHHHHTTSHHHHH
T ss_pred CCCCCc-eEEEEcCCcHHHHHHhhhhcCCC-----------------------CCCCcchhHHHHHHHHHHHHHhHhHHH
Confidence 966887 9999987 6655554432221 124566677777776766543445688
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCC
Q 010538 354 ICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCF 433 (508)
Q Consensus 354 i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~ 433 (508)
+.+++.++++++.+.|.+. +++++.+... ++++++.+.... .+...+.+.|.++||.+++...
T Consensus 290 ~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~~-------~~~~~~~~~~~~---~~~~~~~~~l~~~gi~v~~~~~ 352 (420)
T 3gbx_A 290 YQQQVAKNAKAMVEVFLNR-------GYKVVSGGTE-------NHLFLLDLVDKN---LTGKEADAALGRANITVNKNSV 352 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHT-------TCEEGGGSCS-------SSEEEEECGGGT---CCHHHHHHHHHHTTEECEEECC
T ss_pred HHHHHHHHHHHHHHHHHhc-------CCeeccCCCC-------CeEEEEEcCCCC---CCHHHHHHHHHHCCcEeccccC
Confidence 8999999999999999875 6787764322 688888875421 2345688889999999987321
Q ss_pred CCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC----CCHHHHHHHHHhhhhhhhh
Q 010538 434 CNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM----STFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 434 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~----~t~eev~~l~~~~~~~~~~ 501 (508)
..... .....+.+|+++... .+++++++++++|++.++.
T Consensus 353 ~~~~~-----------------------------~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 395 (420)
T 3gbx_A 353 PNDPK-----------------------------SPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDN 395 (420)
T ss_dssp TTCSS-----------------------------CTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCcc-----------------------------ccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhC
Confidence 11100 000134599999765 3589999999999887654
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7e-24 Score=221.57 Aligned_cols=351 Identities=10% Similarity=0.056 Sum_probs=231.6
Q ss_pred CCCeeeeCCCCC------CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGAT------LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|+.++. ..+|.+++++.+.+ .....++...+. .....+.++.++++++++++ +|+||+|+
T Consensus 41 ~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~-~~~~~~~~~~~~-----~~~~~~l~~~la~~~~~~~~--~v~~~~gg 112 (429)
T 1s0a_A 41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQI-DAMSHVMFGGIT-----HAPAIELCRKLVAMTPQPLE--CVFLADSG 112 (429)
T ss_dssp TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHH-HHCSCCCCSSEE-----CHHHHHHHHHHHHHSCTTCC--EEEEESSH
T ss_pred CCCEEEEcCccHhhccCCCCCHHHHHHHHHHH-HhcccccccccC-----CHHHHHHHHHHHHhCCCCCC--EEEEeCCH
Confidence 567899986654 25788888876654 332222221221 23356677889999998888 99999999
Q ss_pred HHHHHHHHhhcC--CC----CCCeEEEecc-cccchHHHHHHHH-----h--c---CCeEEEEccCCc---cCccccccc
Q 010538 113 TAALKLVGEAFP--WS----HQSSYMYTME-NHNSVLGIREYAL-----S--Q---GAAAFAIDVEEA---VDNDGLSES 172 (508)
Q Consensus 113 t~al~~~~~~l~--~~----~g~~vl~~~~-~h~s~~~~~~~~~-----~--~---G~~v~~v~~~~~---~~~~~l~~~ 172 (508)
++|+++++.++. .. +++.|++... .|++...+..... + . ...+..++.... .....+
T Consensus 113 tea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 189 (429)
T 1s0a_A 113 SVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDER--- 189 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGG---
T ss_pred HHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHH---
Confidence 999999987652 11 4778887764 4544443332210 0 0 113455554311 001011
Q ss_pred cccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCC-CCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEE
Q 010538 173 LVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSE-CNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVL 247 (508)
Q Consensus 173 ~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~-~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vi 247 (508)
|+++++ +++++. .+++++|+++.+ +|+||.+.| +++|.++|++ +|+++|
T Consensus 190 ---------d~~~l~--~~l~~~---~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~------------~~~~li 243 (429)
T 1s0a_A 190 ---------DMVGFA--RLMAAH---RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDR------------EGILLI 243 (429)
T ss_dssp ---------GGHHHH--HHHHHH---TTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHH------------HTCEEE
T ss_pred ---------HHHHHH--HHHHhC---CCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHH------------cCCEEE
Confidence 567777 554211 246788888888 899999888 8888888887 999999
Q ss_pred Eecccc-CCCCC----CCCCCCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccC
Q 010538 248 IDAAKG-CVTQP----PDLSKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQG 321 (508)
Q Consensus 248 vD~a~~-~g~~~----~d~~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~ 321 (508)
+|++|+ +|... .+......|+++ ++|+++++ .++|++++++++++.+.+...++
T Consensus 244 ~De~~~~~g~~g~~~~~~~~~~~~d~~t--~sK~l~~G~~~iG~~~~~~~~~~~l~~~~~~~------------------ 303 (429)
T 1s0a_A 244 ADEIATGFGRTGKLFACEHAEIAPDILC--LGKALTGGTMTLSATLTTREVAETISNGEAGC------------------ 303 (429)
T ss_dssp EECTTTTTTTTSSSSGGGGGTCCCSEEE--ECGGGGTSSSCCEEEEECHHHHHHHHTSTTSS------------------
T ss_pred EeehhhCCcccchHHHhhhcCCCCCEEE--ecccccCCCccceEEEeCHHHHHHhhcCCCcc------------------
Confidence 999997 54322 122233567775 55988854 56899999998876654320000
Q ss_pred ccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEE
Q 010538 322 VEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVS 401 (508)
Q Consensus 322 ~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 401 (508)
.......+.|..++++..++++.+.+ +.+.++++++++++.+.|+++.. .+++..+.+. +.+++
T Consensus 304 -~~~~~t~~~n~~~~~a~~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~---~~~~~~~~~~---------g~~~~ 367 (429)
T 1s0a_A 304 -FMHGPTFMGNPLACAAANASLAILES---GDWQQQVADIEVQLREQLAPARD---AEMVADVRVL---------GAIGV 367 (429)
T ss_dssp -CSCCCTTTTCHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHGGGGG---CTTEEEEEEE---------TTEEE
T ss_pred -cccCCCCCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHhc---CCCEEEEEEe---------eEEEE
Confidence 00001123467777888888887765 35778899999999999987520 1244433221 57888
Q ss_pred EEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCC
Q 010538 402 FNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGY 481 (508)
Q Consensus 402 ~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~ 481 (508)
+.+++. .+...+.+.|.++||.+++. .+.+|||+++
T Consensus 368 ~~~~~~----~~~~~l~~~l~~~Gi~v~~~----------------------------------------~~~iRis~~~ 403 (429)
T 1s0a_A 368 VETTHP----VNMAALQKFFVEQGVWIRPF----------------------------------------GKLIYLMPPY 403 (429)
T ss_dssp EEESSC----BCHHHHHHHHHHTTEECCCB----------------------------------------TTEEEECCCT
T ss_pred EEECCc----ccHHHHHHHHHHCCCEEecc----------------------------------------CCEEEEECCC
Confidence 888642 33456888888899998752 3689999999
Q ss_pred CCCHHHHHHHHHhhhhhhhhhhhcc
Q 010538 482 MSTFEDAKVNRCSSFDFVNFSQFLN 506 (508)
Q Consensus 482 ~~t~eev~~l~~~~~~~~~~~~~~~ 506 (508)
.+|.+|++++++.|+++++.+++++
T Consensus 404 ~~t~e~i~~~~~~l~~~~~~~~~~~ 428 (429)
T 1s0a_A 404 IILPQQLQRLTAAVNRAVQDETFFC 428 (429)
T ss_dssp TCCHHHHHHHHHHHHHHTSSGGGBC
T ss_pred CCCHHHHHHHHHHHHHHHHhhhccc
Confidence 9999999999999999887776655
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-25 Score=230.21 Aligned_cols=285 Identities=13% Similarity=0.034 Sum_probs=200.8
Q ss_pred HHHHHHHHHHcCC-----CC-CCceEEEcCChHHHHHHHHhhcCCCCCC----eEEEecccccchHHHHHHHHhcCCeEE
Q 010538 87 RAAREQVLDYFNA-----SM-KDYKCIFTSGATAALKLVGEAFPWSHQS----SYMYTMENHNSVLGIREYALSQGAAAF 156 (508)
Q Consensus 87 ~~~r~~la~~~~~-----~~-~~~~i~~t~g~t~al~~~~~~l~~~~g~----~vl~~~~~h~s~~~~~~~~~~~G~~v~ 156 (508)
.++|+.+|++++. .+ + +|++|+|+++++.+++.++ ..+|+ +|+++...|+++.. .++..|++++
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~--~i~~t~G~~~al~~~~~~l-~~~Gd~~~~~Vlv~~P~y~~~~~---~~~~~g~~~~ 144 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDR--YIVVGTGSTQLCQAAVHAL-SSLARSQPVSVVAAAPFYSTYVE---ETTYVRSGMY 144 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSS--EEEEEEHHHHHHHHHHHHH-HHTSSSSSEEEEECSSCCTHHHH---HHHTTCBTTE
T ss_pred HHHHHHHHHHHHhcCCCCCCCC--eEEEeCChHHHHHHHHHHh-cCCCCCCcceEEEcCCCchhHHH---HHHHcCCeEE
Confidence 6678888888772 33 5 8999999999999999998 57788 99999877776554 4455688888
Q ss_pred EEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCcccccc
Q 010538 157 AIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEI 236 (508)
Q Consensus 157 ~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~ 236 (508)
.++++.+ .++ .+++++|++++++||||.+++ +| +++
T Consensus 145 ~~~~d~~---------------------~l~-----------~~~~k~v~l~~p~NPtG~~~~--~l---~~~------- 180 (391)
T 3bwn_A 145 KWEGDAW---------------------GFD-----------KKGPYIELVTSPNNPDGTIRE--TV---VNR------- 180 (391)
T ss_dssp EEEEEST---------------------TCC-----------CCSCEEEEEESSCTTTCCCCC--CC---C---------
T ss_pred EecCCHH---------------------HcC-----------CCCCEEEEECCCCCCCchhHH--HH---HHH-------
Confidence 8876431 112 246799999999999999996 33 221
Q ss_pred CCCCCCC--eEEEEeccccCCC-CCCCCCCCCCcEEEEeccccccCCCc--ceEEEE-echhHhhhccccccCceEEecc
Q 010538 237 SPFSKGR--WMVLIDAAKGCVT-QPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIM-RNDAAKLLKNTYFSGGTVAASI 310 (508)
Q Consensus 237 ~~~~~~g--~~vivD~a~~~g~-~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~-~~~~~~~l~~~~~g~~~~~~~~ 310 (508)
+++ ++||+|++|+.+. .++.. ..+.++++.|+||+|| ++| +|++++ ++++++.+.....
T Consensus 181 ----~~~~~~~ii~De~y~~~~~~~l~~-~~~~~i~~~S~SK~~g-~~GlRiG~~~~~~~~l~~~l~~~~~--------- 245 (391)
T 3bwn_A 181 ----PDDDEAKVIHDFAYYWPHYTPITR-RQDHDIMLFTFSKITG-HAGSRIGWALVKDKEVAKKMVEYII--------- 245 (391)
T ss_dssp -------CCCEEEEECTTCSTTTSCCCC-CBCCSEEEEEHHHHHS-CGGGCEEEEEECCHHHHHHHHHHHH---------
T ss_pred ----hhcCCCEEEEeCCCCCCCCCcccc-CCCCeEEEEechhhcC-CCccceEEEEecCHHHHHHHHHHhc---------
Confidence 144 9999999998642 23332 3467899999999999 668 599998 7777766554311
Q ss_pred cchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH---------hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceE
Q 010538 311 ADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN---------SLTVPAICRHIASLGMYVRKVLLSLRHENGADVC 381 (508)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~---------~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~ 381 (508)
....+.+.....++..+++... +..++.++++++++++++.+.|+++ +++
T Consensus 246 ---------------~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------~~~ 304 (391)
T 3bwn_A 246 ---------------VNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKES------DAF 304 (391)
T ss_dssp ---------------HHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTC------SSE
T ss_pred ---------------ccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhC------CCc
Confidence 1113345555556666666432 3357888999999999999999987 357
Q ss_pred EEecCCCCCcc-----cCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhc
Q 010538 382 TIYGTYTSEVS-----YHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEA 456 (508)
Q Consensus 382 ~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~ 456 (508)
++..+.+.... ....+.++++.+++. .. +.+.|.++||.+++|..|..
T Consensus 305 ~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~--~~-----~~~~l~~~gV~v~pg~~fg~-------------------- 357 (391)
T 3bwn_A 305 TLPKYPEAFCNYFGKSLESYPAFAWLGTKEE--TD-----LVSELRRHKVMSRAGERCGS-------------------- 357 (391)
T ss_dssp ECCCCCCEEETTTTEEECCCCSEEEEEESSS--CC-----HHHHHHHTTEECEEGGGGTC--------------------
T ss_pred ccccCCccccccccccCCCcceEEEecCCcH--HH-----HHHHHHHCCEEEccCCCCCC--------------------
Confidence 66544321000 001245788888642 22 77888999999999876532
Q ss_pred CCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 457 GHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
..+++|||++. +.+++++++++|+++++
T Consensus 358 --------------~~~~iRis~~~--~~e~i~~~~~~L~~~~~ 385 (391)
T 3bwn_A 358 --------------DKKHVRVSMLS--REDVFNVFLERLANMKL 385 (391)
T ss_dssp --------------CTTEEEEESCS--CHHHHHHHHHHHHSCC-
T ss_pred --------------CCCEEEEEecC--CHHHHHHHHHHHHHHHH
Confidence 15789999994 89999999999988764
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-24 Score=225.02 Aligned_cols=307 Identities=12% Similarity=0.048 Sum_probs=211.6
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEcCChHHHH--HHHHhhcCCCC------------CCeEEEecccccchHHHHHHHHhc
Q 010538 86 VRAAREQVLDYFNASMKDYKCIFTSGATAAL--KLVGEAFPWSH------------QSSYMYTMENHNSVLGIREYALSQ 151 (508)
Q Consensus 86 ~~~~r~~la~~~~~~~~~~~i~~t~g~t~al--~~~~~~l~~~~------------g~~vl~~~~~h~s~~~~~~~~~~~ 151 (508)
..++|+.+|++++++++ +|++|+|+++++ .+++.++. ++ +++|++....|+++.. .++..
T Consensus 78 ~~~lr~~ia~~~~~~~~--~i~~t~G~~~al~l~~~~~~l~-~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~---~~~~~ 151 (422)
T 3d6k_A 78 IADIRELWAEALGLPAD--LVVAQDGSSLNIMFDLISWSYT-WGNNDSSRPWSAEEKVKWLCPVPGYDRHFT---ITEHF 151 (422)
T ss_dssp CHHHHHHHHHHHTCCGG--GEEECSSCHHHHHHHHHHHHHH-HCCTTCSSCGGGSSCCEEEEEESCCHHHHH---HHHHH
T ss_pred CHHHHHHHHHHhCCChh--HEEEecchHHHHHHHHHHHHhc-CcccccccccccCCCCEEEEeCCccHHHHH---HHHHc
Confidence 56789999999999988 899999999997 67777773 33 3468888766665554 44556
Q ss_pred CCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEE-EeCCCCCCccccCHHHHHHHHcCC
Q 010538 152 GAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFA-FPSECNFSGSRFNLDLINIMKKNP 230 (508)
Q Consensus 152 G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~-~~~~~n~tG~~~~i~~i~~l~~~~ 230 (508)
|++++.+|.+.++ + |+++++ +++. .+++++|+ +++++||||.++|.+++.++++
T Consensus 152 g~~~~~v~~~~~g-~---------------d~~~l~--~~l~-----~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~-- 206 (422)
T 3d6k_A 152 GFEMINVPMTDEG-P---------------DMGVVR--ELVK-----DPQVKGMWTVPVFGNPTGVTFSEQTCRELAE-- 206 (422)
T ss_dssp TCEEEEEEEETTE-E---------------CHHHHH--HHHT-----STTEEEEEECCSSCTTTCCCCCHHHHHHHHH--
T ss_pred CCEEEecCCCCCC-C---------------CHHHHH--HHHh-----cCCCeEEEEcCCCCCCCCCCCCHHHHHHHHH--
Confidence 9999999987543 4 577887 5542 13678888 6899999999999998888877
Q ss_pred ccccccCCCC-CCCeEEEEeccccC---CCC---CCCC-------CCCCCcEEEEeccccccCCCc--ceEEEEechhHh
Q 010538 231 ERILEISPFS-KGRWMVLIDAAKGC---VTQ---PPDL-------SKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAK 294 (508)
Q Consensus 231 ~~~~~~~~~~-~~g~~vivD~a~~~---g~~---~~d~-------~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~ 294 (508)
+|+ ++|++||+|++|+. +.. ..++ ...+.++++.|++|+.+ | | +|++++++++++
T Consensus 207 -------~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~-GlriG~~~~~~~l~~ 277 (422)
T 3d6k_A 207 -------MSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITH-A-GSGVSFFASSKENIE 277 (422)
T ss_dssp -------CCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTTSC-T-TSSCEEEECCHHHHH
T ss_pred -------HHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhhcC-c-ccceEEEEeCHHHHH
Confidence 676 79999999999973 211 1122 23356799999999844 6 5 899999988877
Q ss_pred hhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH--hcChHHHHHHHHHHHHHHHHHHhcc
Q 010538 295 LLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN--SLTVPAICRHIASLGMYVRKVLLSL 372 (508)
Q Consensus 295 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~--~~g~~~i~~~~~~l~~~l~~~L~~l 372 (508)
.+..... ....+.+.....++.++++... ...++.+++++++.++++.+.|.+.
T Consensus 278 ~l~~~~~------------------------~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 333 (422)
T 3d6k_A 278 WYASHAN------------------------VRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSR 333 (422)
T ss_dssp HHHHHHH------------------------HHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH------------------------hhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6654311 0112334444444444543210 0124556666677777777776542
Q ss_pred cCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeecc-CCCCCchHHHhhcCCChhhhh
Q 010538 373 RHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRT-GCFCNPGACAKYLGLSHSDLL 451 (508)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~-g~~~~~~~~~~~~~~~~s~~~ 451 (508)
.. ..+++++..|.. +.++++++++. +...+.+.|.++||.+++ |..|..+.
T Consensus 334 l~--~~~~~~~~~p~~--------g~~~~~~~~~~-----~~~~~~~~l~~~gV~v~~~g~~f~~~~------------- 385 (422)
T 3d6k_A 334 LS--EYGVAKWTSPTG--------GYFISVDVVPG-----TASRVVELAKEAGIALTGAGSSFPLHN------------- 385 (422)
T ss_dssp HG--GGTCEEECCCSB--------SSCEEEEESTT-----CHHHHHHHHHHTTEECCCTTTTSGGGC-------------
T ss_pred cC--cCCceEEeCCCc--------ceEEEEECCCC-----CHHHHHHHHHHCCeEEEcCccccCCCC-------------
Confidence 10 001366665543 78899998753 234578889999999998 44443210
Q ss_pred hhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 452 SNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
....+++|||++. +|.++++++++.|+++++.+
T Consensus 386 -----------------~~~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~ 418 (422)
T 3d6k_A 386 -----------------DPNNENIRLAPSL-PPVAELEVAMDGFATCVLMA 418 (422)
T ss_dssp -----------------CTTSCEEEECCSS-SCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------CCCCCeEEEecCC-CCHHHHHHHHHHHHHHHHHH
Confidence 0025789999998 99999999999999887543
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=5.5e-24 Score=219.37 Aligned_cols=323 Identities=12% Similarity=0.055 Sum_probs=224.1
Q ss_pred CCCeeeeCCCCC------CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGAT------LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..++. ..+|.+.+++.+... ... .....+ .....+++++++++++| ++ ++++|+|+
T Consensus 34 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~~-~~~~~~-----~~~~~~~l~~~la~~~g--~~--~v~~~~~g 102 (392)
T 3ruy_A 34 EGNRYMDLLSAYSAVNQGHRHPKIINALIDQAN-RVT-LTSRAF-----HSDQLGPWYEKVAKLTN--KE--MVLPMNTG 102 (392)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHT-TCS-CCCTTS-----EETTHHHHHHHHHHHHT--CS--EEEEESSH
T ss_pred CCCEEEEcCCChhhhccCCCCHHHHHHHHHHHH-hcc-cccccc-----CCHHHHHHHHHHHHhcC--CC--EEEEeCcH
Confidence 567799987632 247888888766442 221 111111 23446788899999998 55 79999999
Q ss_pred HHHHHHHHhhcCC---------CCCCeEEEecccccchHHHHHHHHhc-C---------CeEEEEccCCccCcccccccc
Q 010538 113 TAALKLVGEAFPW---------SHQSSYMYTMENHNSVLGIREYALSQ-G---------AAAFAIDVEEAVDNDGLSESL 173 (508)
Q Consensus 113 t~al~~~~~~l~~---------~~g~~vl~~~~~h~s~~~~~~~~~~~-G---------~~v~~v~~~~~~~~~~l~~~~ 173 (508)
|+|+++++..+.. .++++|++....|++.......+... + ..+..++.+
T Consensus 103 t~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 170 (392)
T 3ruy_A 103 AEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYG------------ 170 (392)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTT------------
T ss_pred HHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcc------------
Confidence 9999998886532 23678888887776554332221100 0 112233221
Q ss_pred ccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEe
Q 010538 174 VTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLID 249 (508)
Q Consensus 174 ~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD 249 (508)
|+++++ +++ .+++++|++++++||||.++| +++|.++|++ +|+++|+|
T Consensus 171 --------d~~~l~--~~l------~~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~------------~~~~li~D 222 (392)
T 3ruy_A 171 --------DLEALK--AAI------TPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKK------------ENVLFVAD 222 (392)
T ss_dssp --------CHHHHH--HHC------CTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHT------------TTCEEEEE
T ss_pred --------cHHHHH--HHh------ccCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHH------------cCCEEEEe
Confidence 467777 554 468999999999999999999 9999999998 99999999
Q ss_pred cccc-CCCC--CC--CCCCCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCcc
Q 010538 250 AAKG-CVTQ--PP--DLSKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 250 ~a~~-~g~~--~~--d~~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
++|+ ++.. +. +......|++++| |.+++- ..+|++++++++++.+.+...+.
T Consensus 223 e~~~~~~~~g~~~~~~~~~~~~d~~~~S--K~l~gG~~~~G~~~~~~~~~~~~~~~~~~~-------------------- 280 (392)
T 3ruy_A 223 EIQTGLGRTGKVFACDWDNVTPDMYILG--KALGGGVFPISCAAANRDILGVFEPGSHGS-------------------- 280 (392)
T ss_dssp CTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTTSCCEEEEECHHHHTTCCTTSSCC--------------------
T ss_pred echhCCCccccchhhhccCCCCCEEEEc--hhhhCChhhhEEEEECHHHHhhhccCCcCC--------------------
Confidence 9995 3321 12 2223346887665 988730 13899999998876665442211
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEE
Q 010538 324 ELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFN 403 (508)
Q Consensus 324 ~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 403 (508)
..+.+...++++.++++.+.. +++.++++++++++.+.|+++.. +.+....+. ++++++.
T Consensus 281 ----~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~----~~~~~~~~~---------g~~~~~~ 340 (392)
T 3ruy_A 281 ----TFGGNPLACAVSIAALEVLEE---EKLTERSLQLGEKLVGQLKEIDN----PMITEVRGK---------GLFIGIE 340 (392)
T ss_dssp ----SSTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHTTCCC----TTEEEEEEE---------TTEEEEE
T ss_pred ----CCCCCHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHhcC----CCceEEEee---------eeEEEEE
Confidence 124566777777788887654 67788999999999999988621 234433322 6788888
Q ss_pred eeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCC
Q 010538 404 LKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMS 483 (508)
Q Consensus 404 ~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 483 (508)
+++ +. .++.+.|.++||.+++|. .+++|+++++.+
T Consensus 341 ~~~-~~-----~~l~~~l~~~gi~v~~~~---------------------------------------~~~iRi~~~~~~ 375 (392)
T 3ruy_A 341 LNE-PA-----RPYCEQLKAAGLLCKETH---------------------------------------ENVIRIAPPLVI 375 (392)
T ss_dssp ESS-CS-----HHHHHHHHTTTEECCCBT---------------------------------------TTEEEECCCTTC
T ss_pred Ecc-hH-----HHHHHHHHHCCcEEecCC---------------------------------------CCEEEEECCCCC
Confidence 765 22 358888889999998752 578999999999
Q ss_pred CHHHHHHHHHhhhhhh
Q 010538 484 TFEDAKVNRCSSFDFV 499 (508)
Q Consensus 484 t~eev~~l~~~~~~~~ 499 (508)
|.+|++++++.|++++
T Consensus 376 ~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 376 SEEDLEWAFQKIKAVL 391 (392)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999998865
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=225.11 Aligned_cols=308 Identities=11% Similarity=0.046 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHc------CCCCCCceEEEcCChHHHHHHHHhhcCCCCCC-----eEEEe-cccccchHHHHHHH---Hh
Q 010538 86 VRAAREQVLDYF------NASMKDYKCIFTSGATAALKLVGEAFPWSHQS-----SYMYT-MENHNSVLGIREYA---LS 150 (508)
Q Consensus 86 ~~~~r~~la~~~------~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~-----~vl~~-~~~h~s~~~~~~~~---~~ 150 (508)
..++|+.+|+++ +++++ +|++|+|+|+|+++++.++ .++|+ +|+++ ...|+++....... ..
T Consensus 77 ~~~lr~~ia~~~~~~~g~~~~~~--~i~~t~G~t~al~~~~~~l-~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~ 153 (417)
T 3g7q_A 77 KTALLNALAVLLRETLGWDIEPQ--NIALTNGSQSAFFYLFNLF-AGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVS 153 (417)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCGG--GEEEESCHHHHHHHHHHHH-SBC----CCBEEEESSCCCHHHHHC-----CCEEE
T ss_pred cHHHHHHHHHHHHHHhCCCCCcc--cEEEeCCcHHHHHHHHHHH-cCCCccCCcceEEEeCCCccccchhhccchhhhcc
Confidence 556777788776 56777 8999999999999999998 56665 78876 66666554332211 11
Q ss_pred cCCeEEEEccCC-ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcC
Q 010538 151 QGAAAFAIDVEE-AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKN 229 (508)
Q Consensus 151 ~G~~v~~v~~~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~ 229 (508)
.+..+..++.+. ...+ |+++++ .++++++|++++++||||.++|.+++.++++
T Consensus 154 ~~~~~~~~~~~~~~~~~---------------d~~~l~----------~~~~~~~v~~~~p~NptG~~~~~~~~~~l~~- 207 (417)
T 3g7q_A 154 ARPNIELLPEGQFKYHV---------------DFEHLH----------IGEETGMICVSRPTNPTGNVITDEELMKLDR- 207 (417)
T ss_dssp CCCEEEEEGGGEEEEEC---------------CGGGCC----------CCTTEEEEEEESSCTTTCCCCCHHHHHHHHH-
T ss_pred ccCcccccCCccccccc---------------CHHHhc----------cccCceEEEECCCCCCCCCccCHHHHHHHHH-
Confidence 234455555432 1122 344443 2467899999999999999999554444443
Q ss_pred CccccccCCCCCCCeEEEEeccccCCCCCC-----CCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhcccccc
Q 010538 230 PERILEISPFSKGRWMVLIDAAKGCVTQPP-----DLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFS 302 (508)
Q Consensus 230 ~~~~~~~~~~~~~g~~vivD~a~~~g~~~~-----d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g 302 (508)
+|+++|+++|+|++|+...... .....+.++++.|+|| ++ ++| +|++++++++++.+......
T Consensus 208 --------~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK-~~-~~G~r~G~~~~~~~~~~~~~~~~~~ 277 (417)
T 3g7q_A 208 --------LANQHNIPLVIDNAYGVPFPGIIFSEARPLWNPNIILCMSLSK-LG-LPGSRCGIIIANDKTITAIANMNGI 277 (417)
T ss_dssp --------HHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESGG-GT-CTTSCCEEEECCHHHHHHHHHHHHH
T ss_pred --------HHHHcCCEEEEeCCCccccccccccccccCCCCCEEEEEechh-cc-CCCcceEEEEeCHHHHHHHHHhhcc
Confidence 3334999999999997532221 1122367899999999 45 445 89999998887766543111
Q ss_pred CceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChH----H-HHHHHHHHHHHHHHHHhc-ccCCC
Q 010538 303 GGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVP----A-ICRHIASLGMYVRKVLLS-LRHEN 376 (508)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~----~-i~~~~~~l~~~l~~~L~~-l~~~~ 376 (508)
...+.+.....++.+.++ ...+. + ++++++++++++.+.|.+ ++.
T Consensus 278 ------------------------~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-- 328 (417)
T 3g7q_A 278 ------------------------ISLAPGGMGPAMMCEMIK---RNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSE-- 328 (417)
T ss_dssp ------------------------HCCCCCSHHHHHHHHHHH---TTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCT--
T ss_pred ------------------------eeeCCCcHHHHHHHHHHc---CcchHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 112223333333333333 22222 2 566677788888888866 320
Q ss_pred CCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhc
Q 010538 377 GADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEA 456 (508)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~ 456 (508)
-++++..+.. +.++++.++... ++..++.+.|.++||.+++|..|..+... .
T Consensus 329 --~~~~~~~~~~--------g~~~~~~~~~~~---~~~~~l~~~l~~~gi~v~~g~~f~~~~~~-----~---------- 380 (417)
T 3g7q_A 329 --ERCLIHKPEG--------AIFLWLWFKDLP---ITTELLYQRLKARGVLMVPGHYFFPGLDK-----P---------- 380 (417)
T ss_dssp --TTCEEECCCB--------SSEEEEECTTCS---SCHHHHHHHHHHTTEECEEGGGGCTTBSS-----C----------
T ss_pred --CCceeeCCCc--------ceEEEEEcCCCC---CCHHHHHHHHHHCCEEEECchhhCCCCcc-----c----------
Confidence 0366665543 788888886421 34456888899999999999877553200 0
Q ss_pred CCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 457 GHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
. ....+++|||++. |.++++++++.|.++++.+
T Consensus 381 ----------~-~~~~~~iRis~~~--~~~~i~~~~~~l~~~l~~~ 413 (417)
T 3g7q_A 381 ----------W-PHTHQCMRMNYVP--EPDKIEAGVKILAEEIERA 413 (417)
T ss_dssp ----------C-GGGGGEEEEESCS--CHHHHHHHHHHHHHHHHHH
T ss_pred ----------c-ccCCCeEEEEecC--CHHHHHHHHHHHHHHHHHH
Confidence 0 0015799999995 9999999999999887654
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-23 Score=213.99 Aligned_cols=355 Identities=12% Similarity=0.080 Sum_probs=229.3
Q ss_pred CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhc-----
Q 010538 49 ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAF----- 123 (508)
Q Consensus 49 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l----- 123 (508)
...+++.+++++.+.+. ..+ +. .....+++++.+++++|.+ ++++++|+|+|+++++.++
T Consensus 10 ~~~~~~~~~~a~~~~~~-~~~------~~----~~~~~~~l~~~la~~~~~~----~~i~~~sGt~a~~~al~~~~~~~~ 74 (390)
T 3b8x_A 10 SSTWDDLEYKAIQSVLD-SKM------FT----MGEYVKQYETQFAKTFGSK----YAVMVSSGSTANLLMIAALFFTKK 74 (390)
T ss_dssp CCCCCHHHHHHHHHHHH-HTC------CS----SCHHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHTTSSSS
T ss_pred CCCCCHHHHHHHHHHHH-cCC------CC----CChHHHHHHHHHHHHHCCC----cEEEECCHHHHHHHHHHHHHhhhh
Confidence 44568888888765442 211 11 1345788999999999986 4677888889999999998
Q ss_pred -CCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc-cCccccccccccccccccchhhhhcCCCCCCCCCCCCC
Q 010538 124 -PWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA-VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDA 201 (508)
Q Consensus 124 -~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~-~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~ 201 (508)
..++|++|+++..+|+++...+. ..|++++.+|++.+ +.+ |+++++ +++ +++
T Consensus 75 ~~~~~g~~Vi~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~---------------d~~~l~--~~i------~~~ 128 (390)
T 3b8x_A 75 PRLKKGDEIIVPAVSWSTTYYPLQ---QYGLRVKFVDIDINTLNI---------------DIESLK--EAV------TDS 128 (390)
T ss_dssp CSCCTTCEEEEESSSCHHHHHHHH---HTTCEEEEECBCTTTCSB---------------CHHHHH--HHC------CTT
T ss_pred cCCCCcCEEEECCCCcHHHHHHHH---HcCCEEEEEecCccccCc---------------CHHHHH--HHh------CcC
Confidence 46788999999999988776544 46999999998754 444 688888 555 457
Q ss_pred ceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCC--cEEEEe---cccc
Q 010538 202 YNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPV--DFVVMS---FYKI 276 (508)
Q Consensus 202 t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~--D~~~~S---~~K~ 276 (508)
|++|++++ ++|...|+++|.++|++ +|+++|+|++|+.|..+ +....++ |+.++| +||+
T Consensus 129 ~~~v~~~~---~~g~~~~~~~i~~l~~~------------~~~~li~D~a~~~g~~~-~~~~~g~~~~~~~~s~~~~k~~ 192 (390)
T 3b8x_A 129 TKAILTVN---LLGNPNNFDEINKIIGG------------RDIILLEDNCESMGATF-NNKCAGTFGLMGTFSSFYSNHI 192 (390)
T ss_dssp EEEEEEEC---GGGCCCCHHHHHHHHTT------------SCCEEEEECTTCTTCEE-TTEETTSSSSEEEEECCTTSSS
T ss_pred CeEEEEEC---CccChhhHHHHHHHHHH------------cCCEEEEECcCcccCEE-CCcccccccceEEEEccCCCCC
Confidence 89998874 67999999999999998 99999999999988765 5554554 666654 3554
Q ss_pred ccCCCcceEEEEec-hhHhhhccccccC--ceEE-e---c--ccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH
Q 010538 277 FGYPTGLGALIMRN-DAAKLLKNTYFSG--GTVA-A---S--IADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN 347 (508)
Q Consensus 277 ~g~P~G~G~l~~~~-~~~~~l~~~~~g~--~~~~-~---~--~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~ 347 (508)
.+ |.| |+++.++ ++.+.+++...++ .... . . .....+..........+..++.++...+++.. ++.
T Consensus 193 ~~-g~g-G~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~-l~~-- 267 (390)
T 3b8x_A 193 AT-MEG-GCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQ-LKK-- 267 (390)
T ss_dssp CS-SSC-EEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHH-HHH--
T ss_pred cc-CCc-eEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHH-HHH--
Confidence 44 556 8988887 5555555543322 1000 0 0 00000000000000112233556665555553 443
Q ss_pred hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCe
Q 010538 348 SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQ 427 (508)
Q Consensus 348 ~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~ 427 (508)
++++.++.+++++++.+.|+++ +++++..+... .....+++.++... ..+..++.+.|.++||.
T Consensus 268 ---l~~~~~~~~~~~~~l~~~L~~~------~~~~~~~~~~~-----~~~~~~~i~~~~~~--~~~~~~l~~~L~~~gI~ 331 (390)
T 3b8x_A 268 ---LPRFISVRRKNAEYFLDKFKDH------PYLDVQQETGE-----SSWFGFSFIIKKDS--GVIRKQLVENLNSAGIE 331 (390)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHTTC------SSEEECCCCSB-----CCCCEEEEEECTTS--CCCHHHHHHHHHHTTBC
T ss_pred ---HHHHHHHHHHHHHHHHHHhcCC------CCcccCCCCCC-----cccEEEEEEecCcC--cccHHHHHHHHHHCCCC
Confidence 4578888999999999999887 47887654311 01223555665211 13445689999999999
Q ss_pred ecc---CCCCCc-hHHHhhcCCChhhh-hhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhh
Q 010538 428 LRT---GCFCNP-GACAKYLGLSHSDL-LSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 428 v~~---g~~~~~-~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~ 496 (508)
++. |+.|.. +...+ .++. +.+|+.. .....+.+|++++.++|.+||+++++.|+
T Consensus 332 v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~----------~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 390 (390)
T 3b8x_A 332 CRPIVTGNFLKNTDVLKY-----FDYTVHNNVDNA----------EYLDKNGLFVGNHQIELFDEIDYLREVLK 390 (390)
T ss_dssp CBCSTTSSGGGCHHHHTT-----CEEEESSCCHHH----------HHHHHHEEEEECCSSCCHHHHHHHHHHTC
T ss_pred eeeecCCchhhcchhhhc-----CCCCCcCCChHH----------HHHhcCEEEeeCCCCCCHHHHHHHHHhhC
Confidence 997 555655 43210 0010 1112110 00124689999999999999999998863
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.1e-25 Score=227.85 Aligned_cols=348 Identities=15% Similarity=0.054 Sum_probs=220.7
Q ss_pred CeeeeCCCCCCCCHHHHHHHHHHhhccc-cCCCCCccchhhhh-hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHH
Q 010538 41 TVYLDHAGATLYSELQMEAIFRDFTTNV-YGNPHSQSDISLAT-CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKL 118 (508)
Q Consensus 41 ~iyld~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~ 118 (508)
.+-|. ++..+++|.+++++.+.+...+ .+++...+..+... ....+.+++.+++++|++.. .++++|+++|+.+
T Consensus 34 ~i~l~-~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~v~~~~Gs~a~~~ 109 (425)
T 3ecd_A 34 QVELI-ASENIVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGHA---NVQPHSGAQANGA 109 (425)
T ss_dssp SEECC-TTCCCCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSEE---ECCCSSHHHHHHH
T ss_pred ceeee-cccCCCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCCc---eeecCchHHHHHH
Confidence 34443 4455568888888755432221 23343333322222 23344567889999998754 4568888999999
Q ss_pred HHhhcCCCCCCeEEEecccccchH-HHHHHHHhcCC--eEEEEccCCc-cCccccccccccccccccchhhhhcCCCCCC
Q 010538 119 VGEAFPWSHQSSYMYTMENHNSVL-GIREYALSQGA--AAFAIDVEEA-VDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 119 ~~~~l~~~~g~~vl~~~~~h~s~~-~~~~~~~~~G~--~v~~v~~~~~-~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
++.++ .++|++|++....|++.. .... ....|. ++..++.+.+ ..+ |+++++ +++.
T Consensus 110 al~~~-~~~gd~Vi~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~---------------d~~~l~--~~i~- 169 (425)
T 3ecd_A 110 VMLAL-AKPGDTVLGMSLDAGGHLTHGAK-PALSGKWFNALQYGVSRDTMLI---------------DYDQVE--ALAQ- 169 (425)
T ss_dssp HHHHH-CCTTCEEEEECC-------------------CEEEEECCCTTTSSC---------------CHHHHH--HHHH-
T ss_pred HHHHc-cCCCCEEEEcccccccceecchh-hhhcccceeeeecCCCcccCcc---------------CHHHHH--HHHh-
Confidence 99988 788999999998888732 2222 112243 5555665532 333 577787 4442
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC-----CCCCCCCCCcEE
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ-----PPDLSKYPVDFV 269 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~-----~~d~~~~~~D~~ 269 (508)
.+++++|++++++| |...++++|.++|++ +|+++|+|++|+.|.. +..+. .+|++
T Consensus 170 ----~~~~~~v~~~~~~~--~~~~~l~~i~~l~~~------------~~~~li~De~~~~g~~~~~~~~~~~~--~~di~ 229 (425)
T 3ecd_A 170 ----QHKPSLIIAGFSAY--PRKLDFARFRAIADS------------VGAKLMVDMAHIAGVIAAGRHANPVE--HAHVV 229 (425)
T ss_dssp ----HHCCSEEEEECSCC--CSCCCHHHHHHHHHH------------HTCEEEEECGGGHHHHHTTSSCCGGG--TCSEE
T ss_pred ----hcCCcEEEEccccC--CCcCCHHHHHHHHHH------------cCCEEEEECcChHhhhhcccccCchh--cCcEE
Confidence 14678999987766 678999999999998 9999999999865432 11122 37999
Q ss_pred EEeccccccCCCcceEEEEec-hhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHh
Q 010538 270 VMSFYKIFGYPTGLGALIMRN-DAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINS 348 (508)
Q Consensus 270 ~~S~~K~~g~P~G~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~ 348 (508)
++|+||++++|.| |+++.++ .+.+.+.+....+ ..++++...++++..++..+.+
T Consensus 230 ~~s~sK~l~g~~~-g~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~a~~~a~~~~~~ 285 (425)
T 3ecd_A 230 TSTTHKTLRGPRG-GFVLTNDEEIAKKINSAVFPG-----------------------LQGGPLMHVIAGKAVAFGEALT 285 (425)
T ss_dssp EEESSGGGCCCSC-EEEEESCHHHHHHHHHHHC----------------------------CCCHHHHHHHHHHHHHHTS
T ss_pred EecCCcccCCCCc-EEEEeCCHHHHHHHHhhhCcc-----------------------ccCCccHHHHHHHHHHHHHHHH
Confidence 9999999877865 9999885 4544444432211 1235566667777777665544
Q ss_pred cChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCee
Q 010538 349 LTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQL 428 (508)
Q Consensus 349 ~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v 428 (508)
.+++.+.++..++++++.+.|.+. ++++..+... ++++++.++... .+...+.+.|.++||.+
T Consensus 286 ~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~~-------~~~~~~~~~~~~---~~~~~~~~~l~~~gi~v 348 (425)
T 3ecd_A 286 DDFKTYIDRVLANAQALGDVLKAG-------GVDLVTGGTD-------NHLLLVDLRPKG---LKGAQVEQALERAGITC 348 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-------TCEEGGGSCS-------SSEEEEECGGGT---CCHHHHHHHHHHTTEEC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhC-------CCeeccCCCC-------ceEEEEEeCCCC---CCHHHHHHHHHHcCCEe
Confidence 457889999999999999999885 6777765332 688888876421 23456888999999999
Q ss_pred ccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCC----HHHHHHHHHhhhhhhhhh
Q 010538 429 RTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMST----FEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 429 ~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t----~eev~~l~~~~~~~~~~~ 502 (508)
+.+..+.... .....+.+|++++.+++ +++++++++.|++.++..
T Consensus 349 ~~~~~p~~~~-----------------------------~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 349 NKNGIPFDPE-----------------------------KPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp EECCCTTCSS-----------------------------CTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCC-----------------------------CCCCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 8653211100 00124689999665554 999999999999887654
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-23 Score=217.58 Aligned_cols=308 Identities=13% Similarity=0.039 Sum_probs=213.6
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHH-HHHHhcCCeEEEEccC
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIR-EYALSQGAAAFAIDVE 161 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~-~~~~~~G~~v~~v~~~ 161 (508)
....+++++.+++++|++ + +++++|+++|+.+++.++ .++|++|+++...|+++...+ ..++..|++++.+|..
T Consensus 58 ~~~~~~l~~~la~~~g~~-~---~i~~~sG~~ai~~~~~~~-~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~ 132 (389)
T 3acz_A 58 NPTVEQFEEMVCSIEGAA-G---SAAFGSGMGAISSSTLAF-LQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTS 132 (389)
T ss_dssp CHHHHHHHHHHHHHHTCS-E---EEEESSHHHHHHHHHTTT-CCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred ChHHHHHHHHHHHHhCCC-e---EEEeCCHHHHHHHHHHHH-hCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCC
Confidence 456788999999999986 3 455566779999999988 688999999999998766543 3467789999999863
Q ss_pred CccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCC
Q 010538 162 EAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK 241 (508)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~ 241 (508)
|+++++ +++ +++|++|++++++||||.+.|+++|.++|++
T Consensus 133 --------------------d~~~l~--~~i------~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~------------ 172 (389)
T 3acz_A 133 --------------------DVEKVK--AAW------KPNTKMVYLESPANPTCKVSDIKGIAVVCHE------------ 172 (389)
T ss_dssp --------------------CHHHHH--HTC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHH------------
T ss_pred --------------------CHHHHH--Hhc------CCCCeEEEEECCCCCCCeecCHHHHHHHHHH------------
Confidence 367777 554 4578999999999999999999999999998
Q ss_pred CCeEEEEeccccCCC--CCCCCCCCCCcEEEEeccccccCCCc--ceEEEEec-hhHhhhccccccCceEEecccchhhh
Q 010538 242 GRWMVLIDAAKGCVT--QPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRN-DAAKLLKNTYFSGGTVAASIADIDFV 316 (508)
Q Consensus 242 ~g~~vivD~a~~~g~--~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~ 316 (508)
+|+++++|++++.+. .|++ .++|+++.|+||++++|.+ .|++++++ ++++.+.+....
T Consensus 173 ~~~~livD~~~~~~~~~~~~~---~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~-------------- 235 (389)
T 3acz_A 173 RGARLVVDATFTSPCFLKPLE---LGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKD-------------- 235 (389)
T ss_dssp HTCEEEEECTTTCTTTCCGGG---TTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHH--------------
T ss_pred cCCEEEEECCCccccccCccc---cCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHh--------------
Confidence 899999999998765 3443 5799999999999887876 49999998 887766544210
Q ss_pred hhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccC--------CCCCceEEEecCCC
Q 010538 317 KRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRH--------ENGADVCTIYGTYT 388 (508)
Q Consensus 317 ~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~--------~~~~~~~~~~~~~~ 388 (508)
..++.+....+.+..+++. +....++..+.++.+.+.+++.+. ....++++++.+..
T Consensus 236 ----------~g~~~~~~~~~~~~~~l~~-----l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~ 300 (389)
T 3acz_A 236 ----------AGSLMAPMDAFLCARGMKT-----LPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQM 300 (389)
T ss_dssp ----------HCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHC
T ss_pred ----------cCCCCCHHHHHHHHcCccH-----HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhC
Confidence 1122333223322333332 344455666677777777766521 00011111111110
Q ss_pred CCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeecc---C------CCCCchHHHhhcCCChhhhhhhhhcCCc
Q 010538 389 SEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRT---G------CFCNPGACAKYLGLSHSDLLSNIEAGHV 459 (508)
Q Consensus 389 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~---g------~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 459 (508)
...+++++|.+++ . ..+.+.|.+.||.++. | +.|+..... . -+++.+..+|.
T Consensus 301 -----~g~g~~~~~~l~~--~-----~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~---~-~~~~~~~~~g~--- 361 (389)
T 3acz_A 301 -----TGYGSTFLFEMKS--F-----EAAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTHA---A-VPENIMRKQGI--- 361 (389)
T ss_dssp -----SSCCSEEEEEESS--H-----HHHHHHHTTCSSSEEBSCCCCSSCEEECTTTTTTS---S-SCHHHHHHHTC---
T ss_pred -----CCCCeEEEEEECC--H-----HHHHHHHHhCCCcEECcCCCCcccEeeCCcccccc---c-CCHHHHHhcCC---
Confidence 0137899999864 1 2477888889998877 5 666553210 0 12234445543
Q ss_pred cCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhh
Q 010538 460 CWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFD 497 (508)
Q Consensus 460 ~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~ 497 (508)
.++.||+|++..++++.++.+.+++..
T Consensus 362 -----------~~~~iRlsvg~~~~~~li~~l~~al~~ 388 (389)
T 3acz_A 362 -----------TPELVRISVGIENVDDIIADLKQALEL 388 (389)
T ss_dssp -----------CTTEEEEECCSSCHHHHHHHHHHHHTC
T ss_pred -----------CcCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 268999999999999988888887653
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-24 Score=222.17 Aligned_cols=318 Identities=11% Similarity=0.007 Sum_probs=218.4
Q ss_pred cchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHH-HHHHhcCCe
Q 010538 76 SDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIR-EYALSQGAA 154 (508)
Q Consensus 76 ~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~-~~~~~~G~~ 154 (508)
+..+.......+++++.+++++|.+ ++++++|+++|+++++.++ .++|++|+++...|+++.... ..++..|++
T Consensus 58 ~~y~r~~~~~~~~l~~~la~~~g~~----~~~~~~sGt~A~~~al~~~-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~ 132 (392)
T 3qhx_A 58 YEYARTGNPTRTALEAALAAVEDAA----FGRAFSSGMAAADCALRAM-LRPGDHVVIPDDAYGGTFRLIDKVFTGWNVE 132 (392)
T ss_dssp BCBTTTCCHHHHHHHHHHHHHTTCS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEETTCCHHHHHHHHHTGGGGTCE
T ss_pred ccccCCCChHHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEeCCCcchHHHHHHHHHHhcCcE
Confidence 3334444566888999999999986 4788888899999999988 688999999999998776654 344667999
Q ss_pred EEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCcccc
Q 010538 155 AFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERIL 234 (508)
Q Consensus 155 v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~ 234 (508)
+..+|.+ |+++++ +++ .++|++|++++++|+||.+.|+++|.++|++
T Consensus 133 ~~~v~~~--------------------d~~~l~--~~i------~~~~~~v~~~~~~nptG~~~~l~~i~~la~~----- 179 (392)
T 3qhx_A 133 YTPVALA--------------------DLDAVR--AAI------RPTTRLIWVETPTNPLLSIADIAGIAQLGAD----- 179 (392)
T ss_dssp EEEECTT--------------------CHHHHH--HHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHH-----
T ss_pred EEEeCCC--------------------CHHHHH--Hhh------CCCCeEEEEECCCCCCcEEecHHHHHHHHHH-----
Confidence 9999874 256677 444 4689999999999999999999999999998
Q ss_pred ccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc---ceEEEEec-hhHhhhccccccCceEEecc
Q 010538 235 EISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG---LGALIMRN-DAAKLLKNTYFSGGTVAASI 310 (508)
Q Consensus 235 ~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G---~G~l~~~~-~~~~~l~~~~~g~~~~~~~~ 310 (508)
+|+++|+|++|+.+.. .+....++|+++.|+||++| +.| .|+++.++ ++.+.+.....
T Consensus 180 -------~g~~li~D~~~~~~~~-~~~~~~~~di~~~S~sK~lg-~~g~~~~G~v~~~~~~~~~~l~~~~~--------- 241 (392)
T 3qhx_A 180 -------SSAKVLVDNTFASPAL-QQPLSLGADVVLHSTTKYIG-GHSDVVGGALVTNDEELDQSFAFLQN--------- 241 (392)
T ss_dssp -------HTCEEEEECTTTCTTT-CCGGGGTCSEEEEETTTTTT-CSSCCCCEEEEESCHHHHHHHHHHHH---------
T ss_pred -------cCCEEEEECCCccccc-CChHHhCCcEEEEcCccccC-CCCCceEEEEEECcHHHHHHHHHHHH---------
Confidence 8999999999986633 23335589999999999999 444 78888874 55544433211
Q ss_pred cchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEE-EecCCCC
Q 010538 311 ADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCT-IYGTYTS 389 (508)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~-~~~~~~~ 389 (508)
....+.+....+.+...++. +....++..++++++.+.|++.+ .+. +..|.-.
T Consensus 242 ---------------~~g~~~~~~~~~~~~~~l~~-----l~~~~~~~~~~~~~l~~~L~~~~------~v~~v~~p~l~ 295 (392)
T 3qhx_A 242 ---------------GAGAVPGPFDAYLTMRGLKT-----LVLRMQRHSENAAAVAEFLAEHP------AISTVLYPGLP 295 (392)
T ss_dssp ---------------HHCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHTCT------TEEEEECTTST
T ss_pred ---------------hcCCCCCHHHHHHHHhhhhH-----HHHHHHHHHHHHHHHHHHHhcCC------CcceEECCCCC
Confidence 01122333323322223332 45556777888888888888763 453 3333211
Q ss_pred Cccc---------CCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhh-hhcCCc
Q 010538 390 EVSY---------HDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSN-IEAGHV 459 (508)
Q Consensus 390 ~~~~---------~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~-~~~~~~ 459 (508)
. .+ ...+++++|.+++.. .....+...|+..|+.++.|..|+.... +. ...++.+... +
T Consensus 296 ~-~~~~~~~~~~~~g~g~~~~~~l~~~~---~~~~~~~~~l~~~~~~~s~G~~~sl~~~-~~-~~~~~~~~~~~~----- 364 (392)
T 3qhx_A 296 S-HPGHAVAARQMRGFGGMVSVRMRAGR---TAAEQLCAKTNIFILAESLGSVESLIEH-PS-AMTHASTAGSQL----- 364 (392)
T ss_dssp T-STTHHHHHHHCSSCCSEEEEEETTCH---HHHHHHHHHCSSSEECSCCCCSSCEEEC-GG-GTSCGGGBTTBC-----
T ss_pred C-CCCHHHHHHhCCCCceEEEEEeCCcH---HHHHHHHHhCCCceECCCCCCCCceeeC-cc-cccccccCHHHc-----
Confidence 0 00 012789999997521 1123466677778899999987754210 00 0012222221 1
Q ss_pred cCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhh
Q 010538 460 CWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSS 495 (508)
Q Consensus 460 ~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~ 495 (508)
+..++.||+|++..+++++++.+.++|
T Consensus 365 ---------g~~~~~iRlSvg~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 365 ---------EVPDDLVRLSVGIEDVADLLDDLKQAL 391 (392)
T ss_dssp ---------CCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred ---------CCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence 224789999999999999999988876
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8e-24 Score=219.13 Aligned_cols=358 Identities=13% Similarity=0.061 Sum_probs=226.2
Q ss_pred eeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHH
Q 010538 42 VYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVG 120 (508)
Q Consensus 42 iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~ 120 (508)
-|+|.....+ .++.+.+++.+.+... .+.. .....++++.++++++.+ ++++++|+|+|+.+++
T Consensus 31 ~~id~~~~~~~~~~~v~~a~~~~~~~~-------~y~~----~~~~~~l~~~la~~~~~~----~~v~~~~Gt~a~~~~l 95 (399)
T 2oga_A 31 PFLDLKAAYEELRAETDAAIARVLDSG-------RYLL----GPELEGFEAEFAAYCETD----HAVGVNSGMDALQLAL 95 (399)
T ss_dssp CSCCHHHHHHHTHHHHHHHHHHHHHHT-------CCSS----SHHHHHHHHHHHHHTTSS----EEEEESCHHHHHHHHH
T ss_pred cccccCcCCCCCCHHHHHHHHHHHhcC-------CCCC----chhHHHHHHHHHHHHCCC----eEEEecCHHHHHHHHH
Confidence 4555543332 2366777665543211 1111 244678899999999986 4677888899999999
Q ss_pred hhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC-ccCccccccccccccccccchhhhhcCCCCCCCCCCC
Q 010538 121 EAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE-AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAG 199 (508)
Q Consensus 121 ~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~ 199 (508)
.++..++|++|+++...|+++... ++..|++++.+|.+. ...+ |+++++ +++ +
T Consensus 96 ~~~~~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~---------------d~~~l~--~~i------~ 149 (399)
T 2oga_A 96 RGLGIGPGDEVIVPSHTYIASWLA---VSATGATPVPVEPHEDHPTL---------------DPLLVE--KAI------T 149 (399)
T ss_dssp HHTTCCTTCEEEEESSSCTHHHHH---HHHTTCEEEEECBCSSSSSB---------------CHHHHH--HHC------C
T ss_pred HHhCCCCcCEEEECCCccHHHHHH---HHHCCCEEEEEecCCCCCCc---------------CHHHHH--Hhc------C
Confidence 998557889999999888876544 445699999999875 2334 688888 555 3
Q ss_pred CCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCC--CcEEEEecc--c
Q 010538 200 DAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYP--VDFVVMSFY--K 275 (508)
Q Consensus 200 ~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~--~D~~~~S~~--K 275 (508)
+++++|+ ++|+||.+.|+++|.++|++ +|+++|+|++|+.|... +....+ .|++++|+| |
T Consensus 150 ~~~~~v~---~~n~tG~~~~l~~i~~l~~~------------~~~~li~Dea~~~g~~~-~~~~~~~~~di~~~S~~~sK 213 (399)
T 2oga_A 150 PRTRALL---PVHLYGHPADMDALRELADR------------HGLHIVEDAAQAHGARY-RGRRIGAGSSVAAFSFYPGK 213 (399)
T ss_dssp TTEEEEC---CBCGGGCCCCHHHHHHHHHH------------HTCEECEECTTCTTCEE-TTEETTCTTCEEEEECCTTS
T ss_pred CCCeEEE---EeCCcCCccCHHHHHHHHHH------------cCCEEEEECcccccCcc-CCeecccccCEEEEeCCCCc
Confidence 4678877 46789999999999999998 89999999999987542 333333 699999995 9
Q ss_pred cccCCCc-ceEEEEe-chhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHH
Q 010538 276 IFGYPTG-LGALIMR-NDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPA 353 (508)
Q Consensus 276 ~~g~P~G-~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~ 353 (508)
+++ |.| .|+++.+ +++++.+.+....+... .|. ..... ...+.+....+++.++++.+ +.
T Consensus 214 ~~~-~~G~~g~~~~~~~~~~~~l~~~~~~g~~~-------~~~----~~~~g-~~~~~~~~~~a~~~~~l~~~-----~~ 275 (399)
T 2oga_A 214 NLG-CFGDGGAVVTGDPELAERLRMLRNYGSRQ-------KYS----HETKG-TNSRLDEMQAAVLRIRLAHL-----DS 275 (399)
T ss_dssp SSC-CSSCCEEEEESCHHHHHHHHHHHBTTCSS-------TTC----CCSCC-CBCCCCHHHHHHHHHHHHTH-----HH
T ss_pred cCC-cCCceEEEEeCCHHHHHHHHHHHhcCccc-------ccc----ccccc-cCCCcCHHHHHHHHHHHHHH-----HH
Confidence 999 544 6788876 67766665543222110 000 00000 01234455555555555543 45
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCC
Q 010538 354 ICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCF 433 (508)
Q Consensus 354 i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~ 433 (508)
+.++..++++++.+.|.+++ ++++...+.. ....++.|.+... +..++.+.|.++||.++.+..
T Consensus 276 ~~~~~~~~~~~l~~~L~~~~------g~~~~~~~~~-----~~~~~~~~~~~~~-----~~~~l~~~L~~~gI~v~~~~~ 339 (399)
T 2oga_A 276 WNGRRSALAAEYLSGLAGLP------GIGLPVTAPD-----TDPVWHLFTVRTE-----RRDELRSHLDARGIDTLTHYP 339 (399)
T ss_dssp HHHHHHHHHHHHHHHTTTCT------TCBCCCCCTT-----EECCCSSEEEECS-----SHHHHHHHHHHTTBCCBCSCS
T ss_pred HHHHHHHHHHHHHHHhccCC------CccccCCCCC-----CcceeEEEEEECC-----CHHHHHHHHHHCCCceecCCC
Confidence 67788888999999998873 5655432221 0011223444332 234588899999999987531
Q ss_pred CCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 434 CNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 434 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
.+... .++...+|...... +. ......+.+||+++.++|.+|+++++++|+++++-+
T Consensus 340 -~~~~~--------~~~~~~~~~~~~~~-p~--~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~l 396 (399)
T 2oga_A 340 -VPVHL--------SPAYAGEAPPEGSL-PR--AESFARQVLSLPIGPHLERPQALRVIDAVREWAERV 396 (399)
T ss_dssp -SCGGG--------SHHHHTTSCCTTSC-HH--HHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHSC
T ss_pred -Ccccc--------chhhcccCCCCCCC-hh--HHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 11000 01111111100000 00 000013789999999999999999999999887543
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-24 Score=220.72 Aligned_cols=334 Identities=11% Similarity=0.040 Sum_probs=223.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA 163 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~ 163 (508)
...+++++.+|+++|. + ++++|+|+|+|+++++.++..++|++|+++...|+++...+.. .|++++.+|.+.+
T Consensus 32 ~~~~~l~~~la~~~~~--~--~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~~~~~~~~~~~~~---~g~~~~~v~~~~~ 104 (394)
T 1o69_A 32 EFVNRFEQSVKDYSKS--E--NALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICY---LKAKPVFIDCDET 104 (394)
T ss_dssp HHHHHHHHHHHHHHCC--S--EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHHH---TTCEEEEECBCTT
T ss_pred hHHHHHHHHHHHHhCC--C--cEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHHHH---cCCEEEEEEeCCC
Confidence 3577899999999998 4 7999999999999999998567889999999999998765543 6999999998755
Q ss_pred cCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCC
Q 010538 164 VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGR 243 (508)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g 243 (508)
+.+ |+++++ +++.+. .+++++|++++ ++|...|+++|.++|++ +|
T Consensus 105 ~~~---------------d~~~l~--~~i~~~---~~~~~~v~~~~---~~G~~~~l~~i~~l~~~------------~~ 149 (394)
T 1o69_A 105 YNI---------------DVDLLK--LAIKEC---EKKPKALILTH---LYGNAAKMDEIVEICKE------------ND 149 (394)
T ss_dssp SSB---------------CHHHHH--HHHHHC---SSCCCEEEEEC---GGGCCCCHHHHHHHHHH------------TT
T ss_pred CCc---------------CHHHHH--HHHhcc---cCCceEEEEEC---CCCChhhHHHHHHHHHH------------cC
Confidence 445 577777 554210 12678998875 79999999999999998 89
Q ss_pred eEEEEeccccCCCCCCCCC--C-CCCcEEEEeccccccCCCcceEEEEe-chhHhhhccccccCceEEecccchhhhhhc
Q 010538 244 WMVLIDAAKGCVTQPPDLS--K-YPVDFVVMSFYKIFGYPTGLGALIMR-NDAAKLLKNTYFSGGTVAASIADIDFVKRR 319 (508)
Q Consensus 244 ~~vivD~a~~~g~~~~d~~--~-~~~D~~~~S~~K~~g~P~G~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~ 319 (508)
+++|+|++|+.|....+.. . .++|++++|.||.++ |.++|+++++ +++++.+.+....+.. .. ..+
T Consensus 150 ~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~-~~~~G~~~~~~~~l~~~l~~~~~~~~~----~~-~~~---- 219 (394)
T 1o69_A 150 IVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIIT-TSGGGMLIGKNKEKIEKARFYSTQARE----NC-LHY---- 219 (394)
T ss_dssp CEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSC-CSSCEEEEESCHHHHHHHHHHTBTCCC----SS-SSC----
T ss_pred CEEEEECcCcccceeCCcccccccCcEEEEEeCCccCC-CCCceEEEECCHHHHHHHHHHHHhccc----cC-ccc----
Confidence 9999999999765443321 1 357888889999998 7679999996 6777766554222110 00 000
Q ss_pred cCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCce
Q 010538 320 QGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSM 399 (508)
Q Consensus 320 ~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (508)
.....++..++++....+++.. +++ ++++.++.+++++++.+.|+++ ++++.+.... ....++
T Consensus 220 ~~~~~g~~~~~~~~~aa~~l~~-l~~-----l~~~~~~~~~~~~~l~~~L~~~--------~~~~~~~~~~---~~~~~~ 282 (394)
T 1o69_A 220 EHLDYGYNYRLSNVLGAIGVAQ-MEV-----LEQRVLKKREIYEWYKEFLGEY--------FSFLDELENS---RSNRWL 282 (394)
T ss_dssp CCSSCCCBCBCCHHHHHHHHHH-HTT-----HHHHHHHHHHHHHHHHHHHTTT--------EECCCCCTTE---ECCCSS
T ss_pred cccccCcccCcCHHHHHHHHHH-HHH-----HHHHHHHHHHHHHHHHHHhccc--------ccccCCCCCC---cceeEE
Confidence 1123344555666666555542 333 4567788999999999999763 4444332110 001236
Q ss_pred EEEEeeCCC-----------------CCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCC
Q 010538 400 VSFNLKRPD-----------------GSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWD 462 (508)
Q Consensus 400 v~~~~~~~~-----------------~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 462 (508)
+++.++... ...++..++.+.|.++||.+++|..|... ++.+ ..++.. +-
T Consensus 283 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~--~p~~--------~~~~~~---~~ 349 (394)
T 1o69_A 283 STALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHT--QEVF--------KGAKAY---LN 349 (394)
T ss_dssp EEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGG--CGGG--------TTCEEE---EC
T ss_pred EEEEecchhhccccccccccccccccccccCHHHHHHHHHHcCCcccccCCcccc--chhh--------hccCCC---CC
Confidence 778875310 00123456889999999999998655221 0011 000000 00
Q ss_pred CccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 463 DNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 463 ~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
+.. .......+|+..+.++|.+|+++++++|+++++-
T Consensus 350 ~~~--~~~~~~~~~~~~~~~~t~edi~~~~~~l~~~~~~ 386 (394)
T 1o69_A 350 GNS--ELFFQKGICLPSGTAMSKDDVYEISKLILKSIKA 386 (394)
T ss_dssp SHH--HHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred hHH--HHHhcCeEEccCCCCCCHHHHHHHHHHHHHHHhc
Confidence 000 0001256777779999999999999999987643
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-24 Score=230.76 Aligned_cols=312 Identities=12% Similarity=-0.019 Sum_probs=209.5
Q ss_pred HHHHHHHHHHHHHc-CC--CCCCceEEEcCChHHHHHHHHhhcCCCCC----CeEEEecccccchHHHHHHHHhcCCeEE
Q 010538 84 DIVRAAREQVLDYF-NA--SMKDYKCIFTSGATAALKLVGEAFPWSHQ----SSYMYTMENHNSVLGIREYALSQGAAAF 156 (508)
Q Consensus 84 ~~~~~~r~~la~~~-~~--~~~~~~i~~t~g~t~al~~~~~~l~~~~g----~~vl~~~~~h~s~~~~~~~~~~~G~~v~ 156 (508)
.+.+++.+.+++.. |. +++ +|++|+|+++|+.+++.++ ..+| +.|+++...|+++.... +..|.+++
T Consensus 133 ~lr~~ia~~~~~~~gG~~~~~~--~i~~t~G~~~ai~~~~~~l-~~~gd~~~d~Vlv~~p~y~~~~~~~---~~~g~~~v 206 (498)
T 3ihj_A 133 CIREDVAAYITRRDGGVPADPD--NIYLTTGASDGISTILKIL-VSGGGKSRTGVMIPIPQYPLYSAVI---SELDAIQV 206 (498)
T ss_dssp HHHHHHHHHHHHHTTTCCCCGG--GEEEESSHHHHHHHHHHHH-CCCCGGGSEEEEEEESCCTHHHHHH---HHTTCEEE
T ss_pred HHHHHHHHHHHHhcCCCCCCcc--cEEEcCCHHHHHHHHHHHH-cCCCCCCCCEEEEeCCCchhHHHHH---HHcCCEEE
Confidence 34444444444444 34 566 8999999999999999998 4555 49999998888766554 44699999
Q ss_pred EEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCcccccc
Q 010538 157 AIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEI 236 (508)
Q Consensus 157 ~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~ 236 (508)
.++.+.+..+ .+|+++++ +++++.. ...++++|++++++||||.+++.+.+.++++
T Consensus 207 ~~~~~~~~~~-------------~~d~~~le--~~l~~~~-~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~-------- 262 (498)
T 3ihj_A 207 NYYLDEENCW-------------ALNVNELR--RAVQEAK-DHCDPKVLCIINPGNPTGQVQSRKCIEDVIH-------- 262 (498)
T ss_dssp EEECBGGGTT-------------BCCHHHHH--HHHHHHT-TTSEEEEEEEESSCTTTCCCCCHHHHHHHHH--------
T ss_pred EeeccccccC-------------CCCHHHHH--HHHHhhh-ccCCCeEEEEECCCCCCCCcCCHHHHHHHHH--------
Confidence 9998764322 12677777 5553211 0126899999999999999999887666665
Q ss_pred CCCCCCCeEEEEeccccCCCC-----CCCCCCC----------CC-cEEEEeccccccCCCc--ceEEEE---echhHhh
Q 010538 237 SPFSKGRWMVLIDAAKGCVTQ-----PPDLSKY----------PV-DFVVMSFYKIFGYPTG--LGALIM---RNDAAKL 295 (508)
Q Consensus 237 ~~~~~~g~~vivD~a~~~g~~-----~~d~~~~----------~~-D~~~~S~~K~~g~P~G--~G~l~~---~~~~~~~ 295 (508)
+|+++|+++|+|++|+.... ..++... ++ .+++.|+||.|.|++| +||+++ ++++++.
T Consensus 263 -la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~ 341 (498)
T 3ihj_A 263 -FAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQ 341 (498)
T ss_dssp -HHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHH
T ss_pred -HHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHH
Confidence 45559999999999975332 2222211 12 2677899998832556 799884 6666665
Q ss_pred hccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHH-----------HHHhcChHHHHHHHHHHHHH
Q 010538 296 LKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFN-----------LINSLTVPAICRHIASLGMY 364 (508)
Q Consensus 296 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~-----------~~~~~g~~~i~~~~~~l~~~ 364 (508)
+.... . ...+++....+++..+++ ++.. ...+.+++.+++++
T Consensus 342 l~~~~------------------------~-~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~--~~~~~~~l~~~~~~ 394 (498)
T 3ihj_A 342 LVKLL------------------------S-VRLCPPVSGQAAMDIVVNPPVAGEESFEQFSRE--KESVLGNLAKKAKL 394 (498)
T ss_dssp HHHHH------------------------H-HSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHH------------------------h-ccCCCCHHHHHHHHHHhcCCccCcccHHHHHHH--HHHHHHHHHHHHHH
Confidence 54321 0 112345555556555542 2222 46778889999999
Q ss_pred HHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCC-------CccCHHH--HHHHHhhCCCeeccCCCCC
Q 010538 365 VRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDG-------SWFGYRE--VEKLASLSGIQLRTGCFCN 435 (508)
Q Consensus 365 l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~~~~~~--l~~~L~~~gI~v~~g~~~~ 435 (508)
+.+.|+++ +++++..+.+ +.++++++..... ..++... +.++|+++||.+.+|..|.
T Consensus 395 l~~~L~~~------~g~~~~~p~g--------g~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~ 460 (498)
T 3ihj_A 395 TEDLFNQV------PGIHCNPLQG--------AMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFG 460 (498)
T ss_dssp HHHHHHTS------TTEECCCCCB--------SSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTC
T ss_pred HHHHHhcC------CCcEecCCCe--------EEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccC
Confidence 99999987 4788776543 4556555532100 0122223 4677888999999998775
Q ss_pred chHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 436 PGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 436 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
... ..+.+|+|+. .+.++++.+++.|+++++.
T Consensus 461 ~~~--------------------------------~~~~~Ris~~--~~~e~l~~~i~~L~~~~~~ 492 (498)
T 3ihj_A 461 QRE--------------------------------GTYHFRMTIL--PPVEKLKTVLQKVKDFHIN 492 (498)
T ss_dssp CCT--------------------------------TCCBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred CCC--------------------------------CCCEEEEEeC--CCHHHHHHHHHHHHHHHHH
Confidence 421 2568999995 7999999999999988753
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-22 Score=210.90 Aligned_cols=314 Identities=15% Similarity=0.051 Sum_probs=208.2
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEEccC
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDVE 161 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~~ 161 (508)
....+++++.+++++|.+ ++++++|+++|+.+++.++ .++|++|+++...|+++...+. .++..|++++.+|.+
T Consensus 61 ~~~~~~l~~~ia~~~g~~----~~i~~~~g~~ai~~~~~~l-~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~ 135 (404)
T 1e5e_A 61 NPTVSNLEGKIAFLEKTE----ACVATSSGMGAIAATVLTI-LKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA 135 (404)
T ss_dssp CHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT
T ss_pred ChHHHHHHHHHHHHhCCC----cEEEeCChHHHHHHHHHHH-hCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC
Confidence 455778999999999985 3566666789999999988 6789999999999988766433 466789999999875
Q ss_pred CccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCC
Q 010538 162 EAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK 241 (508)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~ 241 (508)
+ +++++ +++ .++|++|++++++||||.++|+++|.++|++ .
T Consensus 136 ---d-----------------~~~l~--~~i------~~~t~~v~l~~p~NptG~v~~l~~i~~la~~--------~--- 176 (404)
T 1e5e_A 136 ---I-----------------PGEVK--KHM------KPNTKIVYFETPANPTLKIIDMERVCKDAHS--------Q--- 176 (404)
T ss_dssp ---S-----------------TTHHH--HHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHT--------S---
T ss_pred ---C-----------------HHHHH--Hhc------CCCCcEEEEECCCCCCCcccCHHHHHHHHHh--------h---
Confidence 1 34555 333 4578999999999999999999999999984 0
Q ss_pred CCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHh-hhccccccCceEEecccchhhhhh
Q 010538 242 GRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAK-LLKNTYFSGGTVAASIADIDFVKR 318 (508)
Q Consensus 242 ~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~~~~~~~~ 318 (508)
+|+++++|++|+.+.....+ ..++|+++.|+||++++|.+ .|+++++++.++ .+.+...++
T Consensus 177 ~~~~li~De~~~~~~~~~~~-~~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~--------------- 240 (404)
T 1e5e_A 177 EGVLVIADNTFCSPMITNPV-DFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDI--------------- 240 (404)
T ss_dssp TTCEEEEECTTTCTTTCCGG-GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCC---------------
T ss_pred cCCEEEEECCCchhhhCCcc-ccCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhC---------------
Confidence 69999999999987633222 35799999999999987865 499999998876 665542211
Q ss_pred ccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccC--------CCCCceEEEecCCCCC
Q 010538 319 RQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRH--------ENGADVCTIYGTYTSE 390 (508)
Q Consensus 319 ~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~--------~~~~~~~~~~~~~~~~ 390 (508)
..++.+....++...+++. .+...++..+..+.+.+.+++.+. ....|+++++.+..
T Consensus 241 --------~g~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~-- 305 (404)
T 1e5e_A 241 --------TGSVISPHDAWLITRGLST-----LNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQM-- 305 (404)
T ss_dssp --------CCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHC--
T ss_pred --------CCCCCCHHHHHHHHHhHhH-----HHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhC--
Confidence 0123343334444444432 344555566677777777766520 00011222222111
Q ss_pred cccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccC---------CCCCchHHHhhcCCChhhhhhhhhcCCccC
Q 010538 391 VSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTG---------CFCNPGACAKYLGLSHSDLLSNIEAGHVCW 461 (508)
Q Consensus 391 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g---------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 461 (508)
...+++++|++++. ...+.+.+.+.||.+... ++|+..... .-++..+...|.
T Consensus 306 ---~~~g~~~~~~~~~~------~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~----~~~~~~~~~~g~----- 367 (404)
T 1e5e_A 306 ---RMYGSMITFILKSG------FEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHA----VVPKEEREAAGI----- 367 (404)
T ss_dssp ---SSCCSEEEEEETTH------HHHHHHHHHTCSSSEESSCCCSSSCEEECGGGTTTT----TSCHHHHHHTTC-----
T ss_pred ---CCCceEEEEEeCCC------HHHHHHHHHhCCCceeccCCCCcceeeecccccccc----cCCHHHHHhcCC-----
Confidence 01378899987542 123677888899954431 223321100 001111222222
Q ss_pred CCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 462 DDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 462 ~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
.++.+|+|++. ||++.+++.|++.++.+
T Consensus 368 ---------~~~~iRis~g~----e~~~~li~~l~~al~~~ 395 (404)
T 1e5e_A 368 ---------TDGMIRLSVGI----EDADELIADFKQGLDAL 395 (404)
T ss_dssp ---------CTTEEEEECCS----SCHHHHHHHHHHHHHHH
T ss_pred ---------CCCeEEEEeCC----CCHHHHHHHHHHHHHHH
Confidence 25899999997 88888888888876543
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.9e-24 Score=236.72 Aligned_cols=321 Identities=12% Similarity=0.031 Sum_probs=230.8
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE 162 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~ 162 (508)
...+...++.+++++|.+. .+++++|+++|+++++.++ .++|+.|+++...|+++...+.. .|++++.++.+.
T Consensus 204 ~g~v~~~ee~la~l~G~d~---~i~~~~Gtt~a~~~~i~al-~~~GD~Vlv~~~~h~s~~~~~~~---~G~~~v~v~~~~ 276 (755)
T 2vyc_A 204 TGAFGESEKYAARVFGADR---SWSVVVGTSGSNRTIMQAC-MTDNDVVVVDRNCHKSIEQGLML---TGAKPVYMVPSR 276 (755)
T ss_dssp CHHHHHHHHHHHHHHTCSE---EEEESSHHHHHHHHHHHHH-CCTTCEEEEESSCCHHHHHHHHH---HCCEEEEECCCB
T ss_pred ccHHHHHHHHHHHHhCCCc---eEEECCcHHHHHHHHHHHh-cCCCCEEEECCCchHHHHHHHHH---cCCEEEEEeCCC
Confidence 3457788999999999973 5888999999999999998 68899999999999998776544 599999998753
Q ss_pred c--c---CccccccccccccccccchhhhhcCCCCCCC-C---CCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccc
Q 010538 163 A--V---DNDGLSESLVTSTKISLLPIQRRKGASFPER-D---PAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERI 233 (508)
Q Consensus 163 ~--~---~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~-~---~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~ 233 (508)
+ + .++ .=..|+++++ +++++. . ....++++++++++ |++|.+.|+++|.++|++
T Consensus 277 ~~~g~~g~i~----------~~~~d~e~le--~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~---- 339 (755)
T 2vyc_A 277 NRYGIIGPIY----------PQEMQPETLQ--KKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEK---- 339 (755)
T ss_dssp CTTSCBCCCC----------GGGGSHHHHH--HHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTT----
T ss_pred CccccccccC----------cCCCCHHHHH--HHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHH----
Confidence 2 1 110 0001467776 555321 0 01234458999986 799999999999999998
Q ss_pred cccCCCCCCCeEEEEeccccCCCC--CC--CCCC-CC--CcE------EEEeccccccCCCcceEEEEech--hHhhhcc
Q 010538 234 LEISPFSKGRWMVLIDAAKGCVTQ--PP--DLSK-YP--VDF------VVMSFYKIFGYPTGLGALIMRND--AAKLLKN 298 (508)
Q Consensus 234 ~~~~~~~~~g~~vivD~a~~~g~~--~~--d~~~-~~--~D~------~~~S~~K~~g~P~G~G~l~~~~~--~~~~l~~ 298 (508)
+|+++++|++|+.+.. +. +... .+ +|+ ++.|+||++++|.|.|+++++++ .+....
T Consensus 340 --------~~~~livDeA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~- 410 (755)
T 2vyc_A 340 --------TSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSR- 410 (755)
T ss_dssp --------TCSEEEEECTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHH-
T ss_pred --------cCCEEEEECcCchhcccCcccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHH-
Confidence 9999999999975311 10 1111 34 566 99999999988887899998876 211000
Q ss_pred ccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 010538 299 TYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGA 378 (508)
Q Consensus 299 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~ 378 (508)
+. .....+..+++++..++++.+|++++...|.+++.+++.++++++++.|++++
T Consensus 411 ----------------~~----~~~~~~~s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~----- 465 (755)
T 2vyc_A 411 ----------------FN----QAYMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLY----- 465 (755)
T ss_dssp ----------------HH----HHHHHTSCSSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred ----------------HH----HHHHHhCCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcc-----
Confidence 00 01234567889999999999999988776567888999999999999998873
Q ss_pred ce---------EEEecCCCCCc--------------------------------------ccC---CCCceEEEEeeCC-
Q 010538 379 DV---------CTIYGTYTSEV--------------------------------------SYH---DTGSMVSFNLKRP- 407 (508)
Q Consensus 379 ~~---------~~~~~~~~~~~--------------------------------------~~~---~~~~~v~~~~~~~- 407 (508)
+ ++++++..... ... --...++|.+++.
T Consensus 466 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~ 544 (755)
T 2vyc_A 466 -KEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMG 544 (755)
T ss_dssp -HHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBC
T ss_pred -ccccccccceeeccCchhccccccccccccccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCC
Confidence 5 66766542100 000 0124677777642
Q ss_pred -CC----CccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC
Q 010538 408 -DG----SWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM 482 (508)
Q Consensus 408 -~~----~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 482 (508)
++ ..++...+.+.|+++||.+... ..+.+|++++++
T Consensus 545 ~~G~~~~~g~~~~~l~~~L~~~gI~~e~~---------------------------------------~~~~v~~~~~~g 585 (755)
T 2vyc_A 545 EDGELEETGVPAALVTAWLGRHGIVPTRT---------------------------------------TDFQIMFLFSMG 585 (755)
T ss_dssp TTSSBCSSCCCHHHHHHHHHTTTCCCSEE---------------------------------------CSSEEEEECCTT
T ss_pred CCCCccccCCcHHHHHHHHHHCCCEEeec---------------------------------------CCCeEEEEECCC
Confidence 22 1245567999999999987531 157899999999
Q ss_pred CCHHHHHHHHHhhhhhhhh
Q 010538 483 STFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 483 ~t~eev~~l~~~~~~~~~~ 501 (508)
+|.+++++|+++|.+|.+.
T Consensus 586 ~t~~~~~~l~~al~~~~~~ 604 (755)
T 2vyc_A 586 VTRGKWGTLVNTLCSFKRH 604 (755)
T ss_dssp CCTTTTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 9999999999999998654
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.5e-24 Score=221.38 Aligned_cols=299 Identities=10% Similarity=-0.013 Sum_probs=202.1
Q ss_pred HHHHHHHHHHc----CCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC
Q 010538 87 RAAREQVLDYF----NASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE 162 (508)
Q Consensus 87 ~~~r~~la~~~----~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~ 162 (508)
.++++.+++++ +.+..+ +|++|+|+++|+.+++.++ ..+|++|+++...|+++.. .++..|.+++.+|++.
T Consensus 83 ~~lr~~ia~~~~~~~~~~~~~-~i~~t~g~~~al~~~~~~l-~~~gd~Vl~~~p~~~~~~~---~~~~~g~~~~~v~~~~ 157 (418)
T 3rq1_A 83 PDFLCAAEKECFGNFRPEGHI-RSIATAGGTGGIHHLIHNY-TEPGDEVLTADWYWGAYRV---ICSDTGRTLVTYSLFD 157 (418)
T ss_dssp HHHHHHHHHHHHGGGCCSSEE-EEEEESHHHHHHHHHHHHH-SCTTCEEEEESSCCTHHHH---HHHHTTCEEEEECSBC
T ss_pred HHHHHHHHHHHhcccCccccc-cEEECCchHHHHHHHHHHh-cCCCCEEEECCCCchhHHH---HHHHcCCEEEEEeeeC
Confidence 34455555544 433211 6999999999999999998 6889999999877766554 4455799999999853
Q ss_pred -ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCce-EEEEeCC-CCCCccccCHHHHHHHHcCCccccccCCC
Q 010538 163 -AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYN-LFAFPSE-CNFSGSRFNLDLINIMKKNPERILEISPF 239 (508)
Q Consensus 163 -~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~-lv~~~~~-~n~tG~~~~i~~i~~l~~~~~~~~~~~~~ 239 (508)
+..+ |++.++ +++.+. ..++++ +++++++ +||||.++|.+++.++++ +|
T Consensus 158 ~~~~~---------------d~~~l~--~~l~~~--~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~---------~~ 209 (418)
T 3rq1_A 158 EHNNF---------------NHEAFQ--NRVNEL--AAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILN---------FL 209 (418)
T ss_dssp TTSSB---------------CHHHHH--HHHHHH--HHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHH---------HH
T ss_pred CCCCc---------------CHHHHH--HHHHHh--hccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHH---------HH
Confidence 3344 577777 444210 001345 8888888 999999999998888887 44
Q ss_pred C------CCCeEEEEeccccCCCCC--------CCCCCCCCc---EEEEeccccccCCCc--ceEEEE---echhHhhhc
Q 010538 240 S------KGRWMVLIDAAKGCVTQP--------PDLSKYPVD---FVVMSFYKIFGYPTG--LGALIM---RNDAAKLLK 297 (508)
Q Consensus 240 ~------~~g~~vivD~a~~~g~~~--------~d~~~~~~D---~~~~S~~K~~g~P~G--~G~l~~---~~~~~~~l~ 297 (508)
+ ++|+++|+|++|...... ......+.| +++.|+||.+| ++| +|++++ ++++++.+.
T Consensus 210 ~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~ 288 (418)
T 3rq1_A 210 KDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFT-MYGQRVGAMIGISDDEEIADEFF 288 (418)
T ss_dssp HHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTT-CCSSCCEEEEEEESSHHHHHHHH
T ss_pred HHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCc-CcCCcceEEEEEeCCHHHHHHHH
Confidence 4 599999999997531110 011112233 78889999998 556 799998 788777665
Q ss_pred cccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHH------HhcChHHHHHHHHHHHHHHHHHHhc
Q 010538 298 NTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLI------NSLTVPAICRHIASLGMYVRKVLLS 371 (508)
Q Consensus 298 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~------~~~g~~~i~~~~~~l~~~l~~~L~~ 371 (508)
..... ..+....+++.....++..+++.. .+ ..+.+++++.++++++.+.|++
T Consensus 289 ~~~~~--------------------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~ 347 (418)
T 3rq1_A 289 EVNKS--------------------TSRATWSNICRPAMRTMANIVADPAKFKEYEA-ERNCYYQLIRDRADIFKQEAAQ 347 (418)
T ss_dssp HHHHH--------------------HHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--------------------HHhhccCCCchHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 43100 000011234555555555454321 11 2456778888999999999987
Q ss_pred ccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhh
Q 010538 372 LRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLL 451 (508)
Q Consensus 372 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~ 451 (508)
+ +++++.+.. +.++++.+. +..++.+.|.++||.+++|
T Consensus 348 ~-------g~~~~~~~~--------~~~~~~~~~-------~~~~~~~~l~~~gi~v~~g-------------------- 385 (418)
T 3rq1_A 348 V-------GLPMLPYRG--------GFFITIPTD-------SANAICEELKKEHIYVIAL-------------------- 385 (418)
T ss_dssp H-------TCCCCCCCS--------SSEEEEECT-------THHHHHHHHHHTTEECEEC--------------------
T ss_pred c-------CCCCCCCCc--------eEEEEcCCC-------CHHHHHHHHHhCCEEEecC--------------------
Confidence 6 466554432 456665553 2245788899999999885
Q ss_pred hhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhh
Q 010538 452 SNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~ 503 (508)
.+++|||++ ..|.++++++++.|+++++.++
T Consensus 386 --------------------~~~iRis~~-~~~~~~i~~~~~~l~~~l~~~~ 416 (418)
T 3rq1_A 386 --------------------ANGIRIAAC-GIPKCQMTGLAEKIYNAMKSLG 416 (418)
T ss_dssp --------------------SSEEEEEGG-GSCHHHHTTHHHHHHHHHHHTT
T ss_pred --------------------CCCeEEEEe-cCCHHHHHHHHHHHHHHHHHHh
Confidence 357999987 5699999999999999886554
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-24 Score=234.46 Aligned_cols=365 Identities=15% Similarity=0.124 Sum_probs=225.7
Q ss_pred CeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc-C---CC-CCCceEEEcCChHHH
Q 010538 41 TVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF-N---AS-MKDYKCIFTSGATAA 115 (508)
Q Consensus 41 ~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~-~---~~-~~~~~i~~t~g~t~a 115 (508)
.+.|..+.....++.+++++.+......+..|... ...+.+.+.+.+++.. + .. ++ +|++|+|+|+|
T Consensus 105 ~i~l~~g~~~~~~~~~v~a~~~~~~~~~y~~~~~g------~~~lr~~ia~~l~~~~~~~~~~~~~~--~i~~t~G~t~a 176 (533)
T 3f6t_A 105 AVNYCHTELGLNRDKVVAEWVNGAVANNYPVPDRC------LVNTEKIINYFLQELSYKDANLAEQT--DLFPTEGGTAA 176 (533)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHTCSCCSSSSC------CHHHHHHHHHHHHHHHTTTCCCGGGE--EEEEEEHHHHH
T ss_pred heeccCCCCCcCCcHHHHHHHHHHHhCCCCCCccc------HHHHHHHHHHHHHHhcCCCCCCCCcc--eEEEECCHHHH
Confidence 45566666665677888877766653322222211 2233333444443331 2 22 34 89999999999
Q ss_pred HHHHHhhc----CCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC----ccCccccccccccccccccchhhhh
Q 010538 116 LKLVGEAF----PWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE----AVDNDGLSESLVTSTKISLLPIQRR 187 (508)
Q Consensus 116 l~~~~~~l----~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~----~~~~~~l~~~~~~~~~~~~d~~~l~ 187 (508)
+.+++.++ ...+|++|+++...|+++... ++..|.+++.++++. +..+ |+++++
T Consensus 177 l~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~~~---------------d~~~l~ 238 (533)
T 3f6t_A 177 IVYAFHSLAENHLLKKGDKIAINEPIFTPYLRI---PELKDYELVEVDLHSYEKNDWEI---------------EPNEIE 238 (533)
T ss_dssp HHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTS---GGGGGSEEEEECCCEETTTTSEE---------------CHHHHH
T ss_pred HHHHHHHhhhhhccCCcCEEEEcCCCcHHHHHH---HHHcCCeEEEEEecCCcccCCCC---------------CHHHHH
Confidence 99999982 268899999999888766544 334588999998863 1222 678888
Q ss_pred cCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCC-CCCeEEEEeccccCCCC-CCCCCC--
Q 010538 188 KGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFS-KGRWMVLIDAAKGCVTQ-PPDLSK-- 263 (508)
Q Consensus 188 ~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~-~~g~~vivD~a~~~g~~-~~d~~~-- 263 (508)
+++ ++++++|++++++||||.++|.+++.++++ +|+ ++|+++|+|++|+.... ..++..
T Consensus 239 --~~l------~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~---------la~~~~~~~li~De~y~~~~~~~~~~~~~~ 301 (533)
T 3f6t_A 239 --KLK------DPSIKALIVVNPTNPTSKEFDTNALNAIKQ---------AVEKNPKLMIISDEVYGAFVPNFKSIYSVV 301 (533)
T ss_dssp --HHS------CTTEEEEEEESSCTTTCBCCCHHHHHHHHH---------HHHHCTTCEEEEECTTGGGSTTCCCHHHHS
T ss_pred --HHh------CCCCeEEEEeCCCCCCccccCHHHHHHHHH---------HHHhCCCCEEEEcCCccccccCccCHhhcC
Confidence 444 568999999999999999999996666665 344 48999999999874221 222211
Q ss_pred CCCcEEEEeccccccCCCc--ceEEEEech-----hHhhhcccc-------ccCceEEecccchhhhhh---ccCccccc
Q 010538 264 YPVDFVVMSFYKIFGYPTG--LGALIMRND-----AAKLLKNTY-------FSGGTVAASIADIDFVKR---RQGVEELF 326 (508)
Q Consensus 264 ~~~D~~~~S~~K~~g~P~G--~G~l~~~~~-----~~~~l~~~~-------~g~~~~~~~~~~~~~~~~---~~~~~~~~ 326 (508)
.+.++++.|+||.+| ++| +|+++++++ +++.+.+.. .+... ..+....|... ........
T Consensus 302 ~~~~i~~~S~SK~~g-~~G~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~--~~p~~~~~i~rl~~~~~~~~~~ 378 (533)
T 3f6t_A 302 PYNTMLVYSYSKLFG-CTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVV--LDPDKMKFIDRLCADSRSIGLY 378 (533)
T ss_dssp GGGEEEEEESHHHHT-CGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTC--SCGGGCCHHHHHHHHHTTTTTG
T ss_pred CCCEEEEecCcccCC-CcccceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccc--cCcchhhhHHHHHHHHHHHHHh
Confidence 135699999999999 668 899999887 544332110 00000 00000000000 00001222
Q ss_pred cCCCCChhHHHHHH-HHHHHHH--------hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCC
Q 010538 327 EDGTASFLSIASIR-HGFNLIN--------SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTG 397 (508)
Q Consensus 327 ~~gt~~~~~~~~l~-~al~~~~--------~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (508)
..++.+.+..+++. .++..+. ...++.+++++++.++++.+.|. + ++.+..+.. +
T Consensus 379 ~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~-------~~~~~~~~~--------g 442 (533)
T 3f6t_A 379 HTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-A-------PKDETDTNT--------H 442 (533)
T ss_dssp GGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-C-------CCCCSTTBC--------C
T ss_pred cccCCChHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhcC-C-------CccccCCCc--------e
Confidence 23344444444422 1233332 12357788889999999999996 5 344443332 6
Q ss_pred ceEEEEeeCC----CCC--------ccCH-HHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCc
Q 010538 398 SMVSFNLKRP----DGS--------WFGY-REVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDN 464 (508)
Q Consensus 398 ~~v~~~~~~~----~~~--------~~~~-~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 464 (508)
.++++.++.. .+. ..+. ..+.++++++||.+.+|..|..+
T Consensus 443 ~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~~--------------------------- 495 (533)
T 3f6t_A 443 YYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAK--------------------------- 495 (533)
T ss_dssp SEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEECSS---------------------------
T ss_pred EEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCcccCCC---------------------------
Confidence 7777777531 000 0011 23456667899999999877542
Q ss_pred cccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 465 DIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 465 ~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
.+++|+|++. .+.++++.+++.|.++++..
T Consensus 496 -------~~~iRls~a~-~~~e~i~~~i~~L~~~l~~~ 525 (533)
T 3f6t_A 496 -------PGELRVSQAN-LPTEDYALIGKQVLELLKEY 525 (533)
T ss_dssp -------TTEEEEESSS-SCHHHHHHHHHHHHHHHHHH
T ss_pred -------CCEEEEEEee-CCHHHHHHHHHHHHHHHHHH
Confidence 5789999965 57899999999999887653
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-24 Score=219.50 Aligned_cols=341 Identities=15% Similarity=0.029 Sum_probs=218.0
Q ss_pred chHHHHHHhhccCCCC-CeeeeCCC---CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC
Q 010538 25 SIDQIRATEFKRLENG-TVYLDHAG---ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS 100 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~~-~iyld~~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~ 100 (508)
.++.+|. ..+.. .. .+| |+++ .+++++.+++++. . +.+| ....+.+++.+++++|++
T Consensus 14 ~~~~~~~-~i~~~-g~~~v~-~~~~~~~~~~~~~~v~~a~~-~-----~~~~----------~~~~~~~~~~~a~~~g~~ 74 (374)
T 2aeu_A 14 ARKIILE-ILNEK-GRDALY-DLSGLSGGFLIDEKDKALLN-T-----YIGS----------SYFAEKVNEYGLKHLGGD 74 (374)
T ss_dssp HHHHHHH-HHHHT-CGGGCE-ECSSCCCCCCCCHHHHHHHT-S-----TTHH----------HHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHH-HHhcc-Ccccee-eecccCCCCCCCHHHHHHHH-H-----hcCc----------hHHHHHHHHHHHHHhCCC
Confidence 4556776 66654 22 356 6443 4677888877763 1 1111 122356677778999984
Q ss_pred -CCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCcccccccccccccc
Q 010538 101 -MKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKI 179 (508)
Q Consensus 101 -~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~ 179 (508)
++ ++++++|+|+|+++++.++ +|++|+++...|++...+...++..|++++.+ .
T Consensus 75 ~~~--~~~~~~ggt~a~~~~~~~~---~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v-~------------------- 129 (374)
T 2aeu_A 75 END--KCVGFNRTSSAILATILAL---KPKKVIHYLPELPGHPSIERSCKIVNAKYFES-D------------------- 129 (374)
T ss_dssp TTE--EEEEESSHHHHHHHHHHHH---CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE-S-------------------
T ss_pred Ccc--eEEEEcChHHHHHHHHHhC---CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe-C-------------------
Confidence 35 7999999999999999987 78999999988877666555666789998887 1
Q ss_pred ccchhhhhcCCCCCCCCCCCCCceE-EEEeCCCCCCc-cccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC
Q 010538 180 SLLPIQRRKGASFPERDPAGDAYNL-FAFPSECNFSG-SRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ 257 (508)
Q Consensus 180 ~~d~~~l~~~~~l~~~~~~~~~t~l-v~~~~~~n~tG-~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~ 257 (508)
|+++++ ++ +++|++ |++++++|||| ...++++|.++|++ +|+++|+|++++.+..
T Consensus 130 --d~~~l~--~~-------~~~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~------------~~~~li~De~~~~~~~ 186 (374)
T 2aeu_A 130 --KVGEIL--NK-------IDKDTLVIITGSTMDLKVIELENFKKVINTAKN------------KEAIVFVDDASGARVR 186 (374)
T ss_dssp --CHHHHH--TT-------CCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHH------------HTCCEEEECTTHHHHH
T ss_pred --CHHHHH--hc-------CCCccEEEEEccCCCCCCCCcccHHHHHHHHHH------------cCCEEEEECCcccccc
Confidence 366777 32 357899 99999999999 88999999999997 8999999999876531
Q ss_pred -CC-C--CCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCCh
Q 010538 258 -PP-D--LSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASF 333 (508)
Q Consensus 258 -~~-d--~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~ 333 (508)
+. . ...+++|++++|+||++++| ++|++++++++++.+..... ...++++.
T Consensus 187 ~~~~~~~~~~~~~di~~~S~sK~l~g~-~~G~~~~~~~~~~~l~~~~~------------------------~~~~~~~~ 241 (374)
T 2aeu_A 187 LLFNQPPALKLGADLVVTSTDKLMEGP-RGGLLAGKKELVDKIYIEGT------------------------KFGLEAQP 241 (374)
T ss_dssp HHTTCCCHHHHTCSEEEEETTSSSSSC-SCEEEEEEHHHHHHHHHHHH------------------------TTTCBCCH
T ss_pred cccccCCccccCCcEEEecCcccccCc-ceEEEEECHHHHHHHHHhhc------------------------cccCCCCH
Confidence 11 1 12246899999999998866 67999999988876654310 01124555
Q ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHH----HHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCC
Q 010538 334 LSIASIRHGFNLINSLTVPAICRHIASL----GMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDG 409 (508)
Q Consensus 334 ~~~~~l~~al~~~~~~g~~~i~~~~~~l----~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 409 (508)
...+++.++++.+....++...++.+.+ .+.+.+.|..+. ...++.+..++. +.++ +.....+.
T Consensus 242 ~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~g~~~~~~~~--------g~~~-~~~~~~~~ 309 (374)
T 2aeu_A 242 PLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAID---DNINIVYERTPT--------GFVI-KRVYKDDT 309 (374)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTC---TTEEEEEEECSS--------EEEE-EEEESSHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hccCcceeeCCc--------eEEE-Eeeccccc
Confidence 5666666676653110122233333333 355555554430 002555543322 3332 22221100
Q ss_pred Ccc-CHH-HHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCC-CCCHH
Q 010538 410 SWF-GYR-EVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGY-MSTFE 486 (508)
Q Consensus 410 ~~~-~~~-~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~t~e 486 (508)
... +.. ...++++++||.+++|..+.. ..+++||+++. ..+++
T Consensus 310 ~~~~~~~~~~~~ll~~~gV~v~~g~~~~~----------------------------------~~~~lRi~~~~~~~~~~ 355 (374)
T 2aeu_A 310 INIKKLIEIGFNLLKNYGIITITVAGMPG----------------------------------ASKSLRIDLTSRDAERI 355 (374)
T ss_dssp HHHHHHHHHHHHHHHHHCEECSTTSSSCS----------------------------------SCCSEEEETTSGGGGGS
T ss_pred ccccchHHHHHHHHHhCCEEEecCCCCCC----------------------------------CCCeEEEEcCCchHHHH
Confidence 000 000 123566788999998753311 14689999974 23444
Q ss_pred HHHHHHHhhhhhhhhhh
Q 010538 487 DAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 487 ev~~l~~~~~~~~~~~~ 503 (508)
+++++.+++++.++-++
T Consensus 356 ~l~~l~~~l~~~l~~~~ 372 (374)
T 2aeu_A 356 DDNYIIKAIVESIKMAF 372 (374)
T ss_dssp CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 58999999988877665
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-23 Score=220.30 Aligned_cols=334 Identities=11% Similarity=-0.016 Sum_probs=209.3
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEE-cc
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAI-DV 160 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v-~~ 160 (508)
....+++++.+++++|.+ . .+++++ +++|+++++.++ .++|++|+++..+|+++...+. .++..|++++.+ +.
T Consensus 57 ~~~~~~l~~~la~~~g~~-~--~v~~~s-Gt~A~~~~l~~~-~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 131 (421)
T 2ctz_A 57 NPTVDVLEKRLAALEGGK-A--ALATAS-GHAAQFLALTTL-AQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSRE 131 (421)
T ss_dssp CHHHHHHHHHHHHHHTCS-E--EEEESS-HHHHHHHHHHHH-CCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTT
T ss_pred ChHHHHHHHHHHHHhCCC-c--eEEecC-HHHHHHHHHHHH-hCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCC
Confidence 456788999999999986 3 455555 599999999988 6889999999999988765443 356689999998 66
Q ss_pred CCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCC
Q 010538 161 EEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFS 240 (508)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~ 240 (508)
+ |+++++ +++ .++|++|++++++|++|.+.|+++|.++|++
T Consensus 132 ~--------------------d~~~l~--~~i------~~~~~~v~~~~~~n~~G~~~~l~~i~~~a~~----------- 172 (421)
T 2ctz_A 132 E--------------------RPEEFL--ALT------DEKTRAWWVESIGNPALNIPDLEALAQAARE----------- 172 (421)
T ss_dssp C--------------------CHHHHH--HHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHH-----------
T ss_pred C--------------------CHHHHH--Hhh------ccCCeEEEEECCCCCCCcccCHHHHHHHHHH-----------
Confidence 3 256667 444 4689999999999999999999999999998
Q ss_pred CCCeEEEEeccc-cCCCCCCCCCCCCCcEEEEeccccccCCCc-ceEEEEec---hh----HhhhccccccCceEEecc-
Q 010538 241 KGRWMVLIDAAK-GCVTQPPDLSKYPVDFVVMSFYKIFGYPTG-LGALIMRN---DA----AKLLKNTYFSGGTVAASI- 310 (508)
Q Consensus 241 ~~g~~vivD~a~-~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G-~G~l~~~~---~~----~~~l~~~~~g~~~~~~~~- 310 (508)
+|+++|+|++| +.|... +....++|++++|+||++++|.+ +|++++.+ ++ .+.+.+...++.......
T Consensus 173 -~g~~livD~~~~~~g~~~-~~~~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~ 250 (421)
T 2ctz_A 173 -KGVALIVDNTFGMGGYLL-RPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEA 250 (421)
T ss_dssp -HTCEEEEECGGGGGGTSC-CGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHH
T ss_pred -cCCEEEEECCcccccccC-CccccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhh
Confidence 89999999999 877532 22245799999999999996653 78888852 12 334555444432211100
Q ss_pred -cchhhhhhccCcccccc----CC-CCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEe
Q 010538 311 -ADIDFVKRRQGVEELFE----DG-TASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIY 384 (508)
Q Consensus 311 -~~~~~~~~~~~~~~~~~----~g-t~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~ 384 (508)
....|.. ..+++ .| ..+....+.....++. +..+.++..++++++.+.|++. ++++.+
T Consensus 251 ~~~~~~~~-----~~r~~~~~~~g~~~~~~~a~~~~~~l~~-----l~~r~~~~~~~a~~l~~~L~~~------p~v~~v 314 (421)
T 2ctz_A 251 FGELAFIV-----KARVDGLRDQGQALGPFEAWVVLLGMET-----LSLRAERHVENTLHLAHWLLEQ------PQVAWV 314 (421)
T ss_dssp HGGGHHHH-----HHHHTHHHHHCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHTC------TTEEEE
T ss_pred cchhHHHH-----HHHHHHHHhcCCCCCHHHHHHHHcCcch-----HHHHHHHHHHhHHHHHHHHHhC------CCeeEE
Confidence 0000100 01111 12 3333333333333332 3445566668999999999987 468776
Q ss_pred cCCCCCccc----------CCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchH-HHhhcC-CChhhhhh
Q 010538 385 GTYTSEVSY----------HDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGA-CAKYLG-LSHSDLLS 452 (508)
Q Consensus 385 ~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~-~~~~~~-~~~s~~~~ 452 (508)
..+.....+ ...+++++|.+++. .. ....+...+...++.++.|..|+... +..... .-+...+.
T Consensus 315 ~~p~~~~~~~~~~~~~~~~~~~g~ivsf~l~~~-~~--~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~ 391 (421)
T 2ctz_A 315 NYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGG-YE--AAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQA 391 (421)
T ss_dssp ECTTSTTCTTHHHHHHHHTTCCCSEEEEEETTH-HH--HHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHH
T ss_pred ECCCCCCCCCHHHHHHhccCCCceEEEEEeCCC-HH--HHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHH
Confidence 422110000 12488999999652 00 11223344444556677774443211 000000 00011233
Q ss_pred hhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhh
Q 010538 453 NIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSS 495 (508)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~ 495 (508)
++|. .++.||+|++.++.++.++.+.+++
T Consensus 392 ~~g~--------------~~~~vRlS~g~e~~~~li~~l~~al 420 (421)
T 2ctz_A 392 QAGV--------------SPEMVRLSVGLEHVEDLKAELKEAL 420 (421)
T ss_dssp HHTC--------------CTTEEEEECCSSCHHHHHHHHHHHT
T ss_pred hcCC--------------CCCeEEEEeCCCCHHHHHHHHHHHh
Confidence 4443 3689999999877666666665554
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.7e-24 Score=222.13 Aligned_cols=353 Identities=14% Similarity=0.036 Sum_probs=232.8
Q ss_pred CCeeeeCCCCCCCCHHHHHHHHHHhhcccc--CCCCCccchhhhhhHHHHHH-HHHHHHHcCCCCCCceEEEcCChHHHH
Q 010538 40 GTVYLDHAGATLYSELQMEAIFRDFTTNVY--GNPHSQSDISLATCDIVRAA-REQVLDYFNASMKDYKCIFTSGATAAL 116 (508)
Q Consensus 40 ~~iyld~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-r~~la~~~~~~~~~~~i~~t~g~t~al 116 (508)
+.+-|. ++..+++|.+++++.+.+ .+.+ ++|.+.+..+....+..++. ++++++++|++.. .++++|+++|+
T Consensus 46 ~~i~l~-~~~~~~~~~v~~a~~~~~-~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~~---~v~~~sGs~a~ 120 (447)
T 3h7f_A 46 DTLEMI-ASENFVPRAVLQAQGSVL-TNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEFA---NVQPHSGAQAN 120 (447)
T ss_dssp HSEECC-TTCCCCCHHHHHHHTSGG-GGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE---ECCCSSHHHHH
T ss_pred CceeEe-cCCCCCCHHHHHHHHHHh-cCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCCce---EEEeCCHHHHH
Confidence 456664 445667999998876544 2222 33444433343334444544 4999999999754 44367778899
Q ss_pred HHHHhhcCCCCCCeEEEecccccchH-HH--HHHHHhcCCeEEEEccCC-ccCccccccccccccccccchhhhhcCCCC
Q 010538 117 KLVGEAFPWSHQSSYMYTMENHNSVL-GI--REYALSQGAAAFAIDVEE-AVDNDGLSESLVTSTKISLLPIQRRKGASF 192 (508)
Q Consensus 117 ~~~~~~l~~~~g~~vl~~~~~h~s~~-~~--~~~~~~~G~~v~~v~~~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l 192 (508)
..++.++ .++|++|++....|+++. .. .... ..+..+..++++. ++.+ |+++++ +++
T Consensus 121 ~~a~~~~-~~~Gd~Vl~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~---------------d~~~l~--~~i 181 (447)
T 3h7f_A 121 AAVLHAL-MSPGERLLGLDLANGGHLTHGMRLNFS-GKLYENGFYGVDPATHLI---------------DMDAVR--ATA 181 (447)
T ss_dssp HHHHHHH-CCTTCEEEEECGGGTCCGGGTCTTSHH-HHSSEEEEECCCTTTCSC---------------CHHHHH--HHH
T ss_pred HHHHHHh-cCCCCEEEecCcccccccchhhhhhhc-CCeeEEEEcCcCcccCCc---------------CHHHHH--HHH
Confidence 9999998 688999999998887732 11 1111 1245666677653 3334 577787 444
Q ss_pred CCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC----CCCCCCCCCCcE
Q 010538 193 PERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT----QPPDLSKYPVDF 268 (508)
Q Consensus 193 ~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~----~~~d~~~~~~D~ 268 (508)
. ..++++|+++.++|+++. ++++|.++|++ +|+++|+|++|+.|. ...+.. .++|+
T Consensus 182 ~-----~~~~~~i~~~~~~~~~~~--~l~~i~~l~~~------------~g~lli~Dea~~~g~~~~g~~~~~~-~~~di 241 (447)
T 3h7f_A 182 L-----EFRPKVIIAGWSAYPRVL--DFAAFRSIADE------------VGAKLLVDMAHFAGLVAAGLHPSPV-PHADV 241 (447)
T ss_dssp H-----HHCCSEEEEECSSCCSCC--CHHHHHHHHHH------------HTCEEEEECTTTHHHHHTTSSCCST-TTCSE
T ss_pred H-----hcCCeEEEEcCCCCCCcc--CHHHHHHHHHH------------cCCEEEEECCchhhhhcCCCCCCCC-CCCcE
Confidence 2 235688888888888876 99999999998 899999999986542 112211 25799
Q ss_pred EEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHh
Q 010538 269 VVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINS 348 (508)
Q Consensus 269 ~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~ 348 (508)
+++|+||+++||.| |+++.++++.+.+.+.... ...++++...++++.+++..+.+
T Consensus 242 ~~~s~sK~l~G~~g-G~i~~~~~~~~~l~~~~~~-----------------------~~~~~~~~~~~~a~~~a~~~~~~ 297 (447)
T 3h7f_A 242 VSTTVHKTLGGGRS-GLIVGKQQYAKAINSAVFP-----------------------GQQGGPLMHVIAGKAVALKIAAT 297 (447)
T ss_dssp EEEESSGGGCCCSC-EEEEECGGGHHHHHHHHTT-----------------------TTCSSCCHHHHHHHHHHHHHTTS
T ss_pred EEecCCcCCCCCCe-EEEEECHHHHHHHhhhcCC-----------------------cccCCccHHHHHHHHHHHHHhhC
Confidence 99999999888987 9999998877666543221 12355666667777777776544
Q ss_pred cChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCee
Q 010538 349 LTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQL 428 (508)
Q Consensus 349 ~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v 428 (508)
.+++.+.+++.++++++.+.|.+... ..++++++.+... .+++++.+.... ++...+.+.|+++||.+
T Consensus 298 ~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~g~~~~~~~~~-------~~~~~~~~~~~~---~~~~~~~~~l~~~GI~v 365 (447)
T 3h7f_A 298 PEFADRQRRTLSGARIIADRLMAPDV--AKAGVSVVSGGTD-------VHLVLVDLRDSP---LDGQAAEDLLHEVGITV 365 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHH--HHTTCEEGGGSCS-------SSEEEEECTTSS---CCHHHHHHHHHHTTEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc--cCCCeEEecCCCC-------CCEEEEEcCCCC---CCHHHHHHHHHHCCeEE
Confidence 35688899999999999999976400 0014677653222 677777775321 34456788888899999
Q ss_pred ccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC----CCHHHHHHHHHhhhhhhhh
Q 010538 429 RTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM----STFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 429 ~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~----~t~eev~~l~~~~~~~~~~ 501 (508)
+....+.... +...++.+|+++... .|++|++++++.|.+.++-
T Consensus 366 ~~~~i~~~~~-----------------------------~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~ 413 (447)
T 3h7f_A 366 NRNAVPNDPR-----------------------------PPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALAT 413 (447)
T ss_dssp BC------------------------------------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHS
T ss_pred ecccCCCCCC-----------------------------CCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 8322111000 001256799998755 5799999999999887643
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-23 Score=214.75 Aligned_cols=327 Identities=14% Similarity=0.066 Sum_probs=214.9
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..+. +..+|.+.+++.+.+ .. +.+....+ .....+++++.+++++| ++ ++++|+|+
T Consensus 38 ~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~-~~-~~~~~~~~-----~~~~~~~l~~~la~~~g--~~--~v~~~~gg 106 (397)
T 2ord_A 38 KGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQA-EK-LIHCSNLF-----WNRPQMELAELLSKNTF--GG--KVFFANTG 106 (397)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHH-HH-CSCCCTTS-----EEHHHHHHHHHHHHTTT--SC--EEEEESSH
T ss_pred CCCEEEECCccccccccCCCCHHHHHHHHHHH-Hh-cccCcccc-----CCHHHHHHHHHHHHhcC--CC--eEEEeCCH
Confidence 56778888543 445788888876644 22 22221111 23557788999999998 45 79999999
Q ss_pred HHHHHHHHhhcCC------CCCCeEEEecc-cccchHHHHHHHHhcCCe------------EEEEccCCccCcccccccc
Q 010538 113 TAALKLVGEAFPW------SHQSSYMYTME-NHNSVLGIREYALSQGAA------------AFAIDVEEAVDNDGLSESL 173 (508)
Q Consensus 113 t~al~~~~~~l~~------~~g~~vl~~~~-~h~s~~~~~~~~~~~G~~------------v~~v~~~~~~~~~~l~~~~ 173 (508)
++|+.+++.++.. .+++.|++... .|+++..+... .|.+ +..+|.+
T Consensus 107 ~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~---~g~~~~~~~~~p~~~~~~~~~~~------------ 171 (397)
T 2ord_A 107 TEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTA---TGQPKYQKPFEPLVPGFEYFEFN------------ 171 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHH---SBCHHHHGGGCSCCTTEEEECTT------------
T ss_pred HHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhc---cCChhhccccCCCCCCeeEecCC------------
Confidence 9999999988732 23456666644 44555544443 3443 5555542
Q ss_pred ccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCcc-ccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccc
Q 010538 174 VTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGS-RFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAK 252 (508)
Q Consensus 174 ~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~-~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~ 252 (508)
|+++++ +++ ++++++|++++++||||. +++.+.+.++++ +|+++|+++|+|++|
T Consensus 172 --------d~~~l~--~~l------~~~~~~v~~~~~~nptG~~~~~~~~l~~l~~---------l~~~~~~~li~De~~ 226 (397)
T 2ord_A 172 --------NVEDLR--RKM------SEDVCAVFLEPIQGESGIVPATKEFLEEARK---------LCDEYDALLVFDEVQ 226 (397)
T ss_dssp --------CHHHHH--HHC------CTTEEEEEECSEECTTTCEECCHHHHHHHHH---------HHHHHTCEEEEECTT
T ss_pred --------CHHHHH--HHh------hcCeEEEEEecccCCCCcccCCHHHHHHHHH---------HHHHcCCEEEEEecc
Confidence 467777 444 357899999999999999 666554444443 333499999999999
Q ss_pred c-CCCC--CCCCCCC--CCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCcccccc
Q 010538 253 G-CVTQ--PPDLSKY--PVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFE 327 (508)
Q Consensus 253 ~-~g~~--~~d~~~~--~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (508)
+ ++.. +.++... ..|++ |++|+++++.++|+++++++++ .+.+... ..
T Consensus 227 ~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~r~G~~~~~~~~~-~l~~~~~------------------------~~ 279 (397)
T 2ord_A 227 CGMGRTGKLFAYQKYGVVPDVL--TTAKGLGGGVPIGAVIVNERAN-VLEPGDH------------------------GT 279 (397)
T ss_dssp TTTTTTSSSSHHHHHTCCCSEE--EECGGGGTTSCCEEEEECSTTC-CCCTTSS------------------------CC
T ss_pred cCCccCccchhhhhhCCCCCee--eeccccCCCcCeEEEEEchHhc-ccCCCCc------------------------CC
Confidence 7 2211 2222222 36866 5579998323489999998764 4332100 01
Q ss_pred CCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCC
Q 010538 328 DGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRP 407 (508)
Q Consensus 328 ~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 407 (508)
..+.+....+++.++++.+.+ +++.++++++++++.+.|+++.. +.+.+....+ .++++++.+++.
T Consensus 280 ~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~---------~g~~~~~~~~~~ 345 (397)
T 2ord_A 280 TFGGNPLACRAGVTVIKELTK---EGFLEEVEEKGNYLMKKLQEMKE--EYDVVADVRG---------MGLMIGIQFREE 345 (397)
T ss_dssp SSTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHH--HCTTEEEEEE---------ETTEEEEEECTT
T ss_pred CCCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHH--hCCceEEEEE---------EeEEEEEEECCh
Confidence 123456667777778887654 56788899999999999877510 0011211111 168888888642
Q ss_pred CCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHH
Q 010538 408 DGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFED 487 (508)
Q Consensus 408 ~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ee 487 (508)
.+..++.+.|.++||.+++|. ++.+|+++++.+|.+|
T Consensus 346 ----~~~~~l~~~l~~~gi~v~~~~---------------------------------------~~~iRis~~~~~~~e~ 382 (397)
T 2ord_A 346 ----VSNREVATKCFENKLLVVPAG---------------------------------------NNTIRFLPPLTVEYGE 382 (397)
T ss_dssp ----SCHHHHHHHHHHTTEECEEET---------------------------------------TTEEEECCCTTCCHHH
T ss_pred ----HHHHHHHHHHHHCCCEEccCC---------------------------------------CCEEEEECCcCCCHHH
Confidence 234568888888999988751 4689999999999999
Q ss_pred HHHHHHhhhhhhh
Q 010538 488 AKVNRCSSFDFVN 500 (508)
Q Consensus 488 v~~l~~~~~~~~~ 500 (508)
++++++.|+++++
T Consensus 383 i~~~~~~l~~~l~ 395 (397)
T 2ord_A 383 IDLAVETLKKVLQ 395 (397)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=8.5e-24 Score=216.35 Aligned_cols=319 Identities=12% Similarity=0.044 Sum_probs=207.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA 163 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~ 163 (508)
...+++++.+++++|.+ ++++++|+|+|+.+++.++..++|++|+++...|+++.... +..|++++.++++.+
T Consensus 35 ~~~~~l~~~la~~~~~~----~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~~~~~~~~~~---~~~G~~~~~~~~~~~ 107 (367)
T 3nyt_A 35 PEVTELEDRLADFVGAK----YCISCANGTDALQIVQMALGVGPGDEVITPGFTYVATAETV---ALLGAKPVYVDIDPR 107 (367)
T ss_dssp HHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHH---HHTTCEEEEECBCTT
T ss_pred hHHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHH---HHcCCEEEEEecCCc
Confidence 34778899999999986 58999999999999999986788999999999998876554 456999999998754
Q ss_pred -cCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC
Q 010538 164 -VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG 242 (508)
Q Consensus 164 -~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~ 242 (508)
..+ |+++++ +++ ++++++|+ ++|++|...|+++|.++|++ +
T Consensus 108 ~~~~---------------d~~~l~--~~i------~~~~~~v~---~~~~~G~~~~~~~i~~la~~------------~ 149 (367)
T 3nyt_A 108 TYNL---------------DPQLLE--AAI------TPRTKAII---PVSLYGQCADFDAINAIASK------------Y 149 (367)
T ss_dssp TCSB---------------CGGGTG--GGC------CTTEEEEC---CBCGGGCCCCHHHHHHHHHH------------T
T ss_pred cCCc---------------CHHHHH--Hhc------CcCCcEEE---eeCCccChhhHHHHHHHHHH------------c
Confidence 444 678888 554 46788887 67799999999999999998 9
Q ss_pred CeEEEEeccccCCCCCCCCCCCCC--cEEEEec--cccccCCCc-ceEEEEe-chhHhhhccccccCceEEecccchhhh
Q 010538 243 RWMVLIDAAKGCVTQPPDLSKYPV--DFVVMSF--YKIFGYPTG-LGALIMR-NDAAKLLKNTYFSGGTVAASIADIDFV 316 (508)
Q Consensus 243 g~~vivD~a~~~g~~~~d~~~~~~--D~~~~S~--~K~~g~P~G-~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~ 316 (508)
|+++|+|++|+.|.. .+....+. |++++|+ ||+++ +.| .|+++.+ +++.+.+.+....+.. . .+.
T Consensus 150 ~~~li~D~a~~~g~~-~~~~~~~~~~di~~~Sf~~~K~l~-~~g~gg~~~~~~~~l~~~~~~~~~~g~~-~------~~~ 220 (367)
T 3nyt_A 150 GIPVIEDAAQSFGAS-YKGKRSCNLSTVACTSFFPSAPLG-CYGDGGAIFTNDDELATAIRQIARHGQD-R------RYH 220 (367)
T ss_dssp TCCBEEECTTTTTCE-ETTEETTSSSSEEEEECCTTSSSC-CSSCCEEEEESCHHHHHHHHHHTBTTEE-E------TTE
T ss_pred CCEEEEECccccCCe-ECCeeccCCCCEEEEECCCCCcCC-CcCceeEEEeCCHHHHHHHHHHHhcCCC-c------Cce
Confidence 999999999998765 23222233 9999995 89999 534 5777774 4555555554332221 0 000
Q ss_pred hhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCC
Q 010538 317 KRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDT 396 (508)
Q Consensus 317 ~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 396 (508)
.....+ ....+....+ .++..+. .++.+.++.+++++++.+.|+++ ++.+....... ...
T Consensus 221 ----~~~~g~-~~~~~~~~aa---~~~~~l~--~~~~~~~~~~~~~~~~~~~L~~~-------~~~~~~~~~~~---~~~ 280 (367)
T 3nyt_A 221 ----HIRVGV-NSRLDTLQAA---ILLPKLE--IFEEEIALRQKVAAEYDLSLKQV-------GIGTPFIEVNN---ISV 280 (367)
T ss_dssp ----ECSCCC-BCCCCHHHHH---HHHHHHH--THHHHHHHHHHHHHHHHHHHHHT-------TCCCCCCCTTE---ECC
T ss_pred ----eeccCc-CCCccHHHHH---HHHHHHH--HHHHHHHHHHHHHHHHHHHhccC-------CeeccCCCCCC---cee
Confidence 000000 0112222222 2222222 35777788899999999999886 33332221110 011
Q ss_pred CceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEE
Q 010538 397 GSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIR 476 (508)
Q Consensus 397 ~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iR 476 (508)
..++.+.+++ ...+.+.|.++||.++.+..+.. ..++.++.. ...++. ........+|
T Consensus 281 ~~~~~~~~~~-------~~~l~~~L~~~GI~~~~~~~~~~-~~~~~~~~~----~~~~~~----------~~~~~~~~l~ 338 (367)
T 3nyt_A 281 YAQYTVRMDN-------RESVQASLKAAGVPTAVHYPIPL-NKQPAVADE----KAKLPV----------GDKAATQVMS 338 (367)
T ss_dssp CSSEEEECSS-------HHHHHHHHHHHTCCCBCSCSSCG-GGSGGGCCT----TCCCHH----------HHHHHHHEEE
T ss_pred eEEEEEEeCC-------HHHHHHHHHHCCCceeccCCCcc-ccChhhhcc----CCCChH----------HHHHHhCeEE
Confidence 2344444431 24588999999999987642111 111111100 000000 0011357899
Q ss_pred EecCCCCCHHHHHHHHHhhhhh
Q 010538 477 VSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 477 is~~~~~t~eev~~l~~~~~~~ 498 (508)
++++..+|++||+++++.+++.
T Consensus 339 lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 339 LPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp ECCCTTCCHHHHHHHHHHHHC-
T ss_pred ccCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998754
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-24 Score=221.31 Aligned_cols=332 Identities=11% Similarity=0.020 Sum_probs=205.3
Q ss_pred eeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC------CCCceEEE--cCChH
Q 010538 42 VYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS------MKDYKCIF--TSGAT 113 (508)
Q Consensus 42 iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~------~~~~~i~~--t~g~t 113 (508)
+|+|+.+.+++.+.+.+++.+ .... ..+.......+ ..++|+.++++++.. ++ +|++ |+|+|
T Consensus 37 ~~~d~~~~~~~~~~v~~a~~~-~~~~-~~~~~Y~~~~g------~~~lr~~ia~~~~~~~~~~~~~~--~i~~v~t~G~~ 106 (401)
T 7aat_A 37 AYRDDNGKPYVLNCVRKAEAM-IAAK-KMDKEYLPIAG------LADFTRASAELALGENSEAFKSG--RYVTVQGISGT 106 (401)
T ss_dssp SCCCTTSCCCCCHHHHHHHHH-HHHT-TCCCCCCCTTC------CHHHHHHHHHHHHCTTCHHHHTT--CEEEEEEEHHH
T ss_pred eEECCCCCEechHHHHHHHHH-hccc-ccccCCCCCCC------CHHHHHHHHHHhcCCCccccccC--ceEEEecCcch
Confidence 355666666666777766543 3221 11222111112 456677777777643 67 7877 99999
Q ss_pred HHHHHHHhhcC--CCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC--ccCccccccccccccccccchhhhhcC
Q 010538 114 AALKLVGEAFP--WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE--AVDNDGLSESLVTSTKISLLPIQRRKG 189 (508)
Q Consensus 114 ~al~~~~~~l~--~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~--~~~~~~l~~~~~~~~~~~~d~~~l~~~ 189 (508)
+|+++++.++. .++|++|+++...|+++.... +..|.+++.+|++. +..+ |++.++
T Consensus 107 ~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~---------------d~~~l~-- 166 (401)
T 7aat_A 107 GSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIF---RDAGLQLQAYRYYDPKTCSL---------------DFTGAM-- 166 (401)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHH---HHTTCEEEEEECEETTTTEE---------------CHHHHH--
T ss_pred HHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHH---HHcCCeeEeeeeeccccCcc---------------CHHHHH--
Confidence 99998887652 377999999988887776554 45699999999853 3333 566444
Q ss_pred CCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC-CCC-----CC--
Q 010538 190 ASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT-QPP-----DL-- 261 (508)
Q Consensus 190 ~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~-~~~-----d~-- 261 (508)
+.+++ ..++++++++++++||||.+++.+++.++++ +|+++|+++++|+++.... .+. .+
T Consensus 167 ~~l~~---~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~---------~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~ 234 (401)
T 7aat_A 167 EDISK---IPEKSIILLHACAHNPTGVDPRQEQWKELAS---------VVKKRNLLAYFDMAYQGFASGDINRDAWALRH 234 (401)
T ss_dssp HHHTT---SCTTCEEEEESSSCTTTCCCCCHHHHHHHHH---------HHHHTTCEEEEEESCTTTTTSCHHHHTHHHHH
T ss_pred HHHHh---CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH---------HHHhCCcEEEEccccccccCCCccccHHHHHH
Confidence 33322 3567899999999999999999776666655 4555999999999976422 211 01
Q ss_pred --CCCCCcEEEEeccccccCCCc--ceEEEE---echhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChh
Q 010538 262 --SKYPVDFVVMSFYKIFGYPTG--LGALIM---RNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFL 334 (508)
Q Consensus 262 --~~~~~D~~~~S~~K~~g~P~G--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 334 (508)
...+..+++.|+||.|| ++| +|++++ +++..+.+....... .+... ..++..
T Consensus 235 ~~~~~~~~i~~~S~sK~~~-~~G~RiG~l~~~~~~~~~~~~~~~~~~~~-------------------~~~~~-~~~~~~ 293 (401)
T 7aat_A 235 FIEQGIDVVLSQSYAKNMG-LYGERAGAFTVICRDAEEAKRVESQLKIL-------------------IRPMY-SNPPMN 293 (401)
T ss_dssp HHHTTCCCEEEEECTTTSC-CGGGCEEEEEEECSSHHHHHHHHHHHHHH-------------------HHHHH-SSCCHH
T ss_pred HHhcCCcEEEEecCCcccc-cccCceEEEEEEeCCHHHHHHHHHHHHHH-------------------HHhcc-CCCChH
Confidence 12245689999999999 668 799987 333221111110000 00111 122222
Q ss_pred HHHHHHHHHHH--H-H--hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCC
Q 010538 335 SIASIRHGFNL--I-N--SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDG 409 (508)
Q Consensus 335 ~~~~l~~al~~--~-~--~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 409 (508)
....+..+++. + . ...++..+++++++++++.+.|+++.. .+++++..+.. +.+++..+
T Consensus 294 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~---~~~~~~~~~~~--------~~~~~~~~----- 357 (401)
T 7aat_A 294 GARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGS---SHNWQHITDQI--------GMFCFTGL----- 357 (401)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---CSCCHHHHHCC--------SSEEECCC-----
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCCceecCCc--------ceEEecCC-----
Confidence 22222222210 0 0 112577888999999999999987620 01244444432 44444332
Q ss_pred CccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHH
Q 010538 410 SWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAK 489 (508)
Q Consensus 410 ~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~ 489 (508)
+...+..+++++||.+.+ .+|+|++.+++++ |+
T Consensus 358 ---~~~~~~~ll~~~gi~v~~-------------------------------------------~~Ris~~~~~~~~-i~ 390 (401)
T 7aat_A 358 ---KPEQVERLTKEFSIYMTK-------------------------------------------DGRISVAGVASSN-VG 390 (401)
T ss_dssp ---CHHHHHHHHHHHCEECCT-------------------------------------------TCEEEGGGCCTTT-HH
T ss_pred ---CHHHHHHHHHhCCEeccC-------------------------------------------CCeEEeccCChhh-HH
Confidence 223466666888999753 2799999776665 99
Q ss_pred HHHHhhhhhh
Q 010538 490 VNRCSSFDFV 499 (508)
Q Consensus 490 ~l~~~~~~~~ 499 (508)
++++.|++.+
T Consensus 391 ~~~~~l~~~~ 400 (401)
T 7aat_A 391 YLAHAIHQVT 400 (401)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998765
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.91 E-value=5e-22 Score=207.31 Aligned_cols=327 Identities=14% Similarity=0.072 Sum_probs=213.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC-
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE- 162 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~- 162 (508)
....++++.++++++.+ ++++|+|+|+|+.+++.++. +|++|+++...|+++.... +..|++++.++++.
T Consensus 52 ~~~~~l~~~la~~~~~~----~v~~~~ggt~al~~~l~~l~--~gd~Vlv~~~~~~~~~~~~---~~~G~~~~~v~~~~~ 122 (424)
T 2po3_A 52 PLVREFEERVAGLAGVR----HAVATCNATAGLQLLAHAAG--LTGEVIMPSMTFAATPHAL---RWIGLTPVFADIDPD 122 (424)
T ss_dssp HHHHHHHHHHHHHHTSS----EEEEESCHHHHHHHHHHHHT--CCSEEEEESSSCTHHHHHH---HHTTCEEEEECBCTT
T ss_pred HHHHHHHHHHHHHhCCC----eEEEeCCHHHHHHHHHHHcC--CCCEEEECCCccHHHHHHH---HHcCCEEEEEecCCC
Confidence 45778999999999973 79999999999999999983 5799999999998876543 45699999999875
Q ss_pred ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC
Q 010538 163 AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG 242 (508)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~ 242 (508)
...+ |+++++ +++ ++++++|++++ +||...++++|.++|++ +
T Consensus 123 ~~~~---------------d~~~l~--~~i------~~~~~~v~~~~---~tG~~~~l~~i~~la~~------------~ 164 (424)
T 2po3_A 123 TGNL---------------DPDQVA--AAV------TPRTSAVVGVH---LWGRPCAADQLRKVADE------------H 164 (424)
T ss_dssp TSSB---------------CHHHHG--GGC------CTTEEEEEEEC---GGGCCCCHHHHHHHHHH------------T
T ss_pred cCCc---------------CHHHHH--Hhh------CcCCcEEEEEC---CCCCcCCHHHHHHHHHH------------c
Confidence 3334 688888 555 45789988764 79999999999999998 9
Q ss_pred CeEEEEeccccCCCCCCCCCCC--CCcEEEEecc--ccccCCCcceEEEEe-chhHhhhccccccCceEEecccchhhhh
Q 010538 243 RWMVLIDAAKGCVTQPPDLSKY--PVDFVVMSFY--KIFGYPTGLGALIMR-NDAAKLLKNTYFSGGTVAASIADIDFVK 317 (508)
Q Consensus 243 g~~vivD~a~~~g~~~~d~~~~--~~D~~~~S~~--K~~g~P~G~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~ 317 (508)
|+++|+|++|+.|.. .+.... ..|++++|+| |+++ +...|+++.+ +++++.+.+....+... .+.
T Consensus 165 ~~~li~Dea~~~g~~-~~~~~~~~~~di~~~S~sk~K~l~-~~~~G~~v~~~~~l~~~l~~~~~~~~~~-------~~~- 234 (424)
T 2po3_A 165 GLRLYFDAAHALGCA-VDGRPAGSLGDAEVFSFHATKAVN-AFEGGAVVTDDADLAARIRALHNFGFDL-------PGG- 234 (424)
T ss_dssp TCEEEEECTTCTTCE-ETTEETTSSSSEEEEECCTTSSSC-CSSCEEEEESCHHHHHHHHHHHBTTTTC-------TTC-
T ss_pred CCEEEEECccccCCe-ECCeecccccCEEEEeCCCCCCcc-CCCCeEEEeCCHHHHHHHHHHHhcCccc-------ccc-
Confidence 999999999997554 222111 1589999988 7887 4347999988 67777666543221110 000
Q ss_pred hccCccccccCCCC-ChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCC-CCCcccCC
Q 010538 318 RRQGVEELFEDGTA-SFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTY-TSEVSYHD 395 (508)
Q Consensus 318 ~~~~~~~~~~~gt~-~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~-~~~~~~~~ 395 (508)
.. ..|.. .+..+ +...++..+. +++.+.++..++++++.+.|.++ ++++++.++ ... .
T Consensus 235 -----~~--~~g~~~~~~~~-~aa~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~------~g~~~~~~~~~~~----~ 294 (424)
T 2po3_A 235 -----SP--AGGTNAKMSEA-AAAMGLTSLD--AFPEVIDRNRRNHAAYREHLADL------PGVLVADHDRHGL----N 294 (424)
T ss_dssp -----CT--TCCCBCCCCHH-HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTCSC------TTEEECCGGGGSC----C
T ss_pred -----cc--ccCcCCCcCHH-HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhccC------CCccccCCCCCCc----c
Confidence 00 01111 11222 2222222222 36778888999999999999887 368887632 210 0
Q ss_pred CCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHH-HhhcCCChhhhhhhhhcCCccCCCccccCCCCCce
Q 010538 396 TGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGAC-AKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGA 474 (508)
Q Consensus 396 ~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (508)
...++++.+++.. ..++..++.+.|.++||.+++ .|.++.. .+.+ ..+|... | +. ........
T Consensus 295 ~~~~~~i~~~~~~-~~~~~~~l~~~L~~~gI~v~~--~~~~~~~~~~~~--------~~~g~~~-~--~~--~~r~~~~~ 358 (424)
T 2po3_A 295 NHQYVIVEIDEAT-TGIHRDLVMEVLKAEGVHTRA--YFSPGCHELEPY--------RGQPHAP-L--PH--TERLAARV 358 (424)
T ss_dssp CCCCEEEEECHHH-HSSCHHHHHHHHHHTTEECBC--TTCSCGGGSTTT--------TTSCCCC-C--HH--HHHHHTTE
T ss_pred ccEEEEEEECCcc-chhhHHHHHHHHHHCCCceec--ccCCccccchhh--------hhcCCCC-C--hh--HHHHhcCE
Confidence 1256667775200 002345688899999999987 3332110 0000 0000000 0 00 00001345
Q ss_pred EEEecCCCCCHHHHHHHHHhhhhhhhhhh
Q 010538 475 IRVSFGYMSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 475 iRis~~~~~t~eev~~l~~~~~~~~~~~~ 503 (508)
+|++++.++|.+|++++++.|+++++...
T Consensus 359 l~l~~~~~~t~e~i~~~~~~L~~~~~~~~ 387 (424)
T 2po3_A 359 LSLPTGTAIGDDDIRRVADLLRLCATRGR 387 (424)
T ss_dssp EEECCSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999998876543
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.91 E-value=7.7e-24 Score=223.82 Aligned_cols=316 Identities=14% Similarity=0.062 Sum_probs=199.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEEccCC
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDVEE 162 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~~~ 162 (508)
...+++++++++++|++ ++++++|+++|+.+++. + .++|++|+++...|+++...+. .++..|++++.+|.+
T Consensus 133 ~~~~~l~~~la~~~g~~----~~i~~~sGt~al~~~l~-~-~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~- 205 (464)
T 1ibj_A 133 PTRDALESLLAKLDKAD----RAFCFTSGMAALSAVTH-L-IKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT- 205 (464)
T ss_dssp HHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHT-T-SCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT-
T ss_pred HHHHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHH-H-hCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCC-
Confidence 36788999999999975 46666777889998886 4 5789999999988988765443 345679999999874
Q ss_pred ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC
Q 010538 163 AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG 242 (508)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~ 242 (508)
|+++++ +++ +++|++|++++++||||.++|+++|.++|++ +
T Consensus 206 -------------------d~~~l~--~~i------~~~tk~v~l~~p~NptG~v~~l~~i~~la~~------------~ 246 (464)
T 1ibj_A 206 -------------------KLDEVA--AAI------GPQTKLVWLESPTNPRQQISDIRKISEMAHA------------Q 246 (464)
T ss_dssp -------------------SHHHHH--HHC------CSSEEEEEECSSCTTTCCCCCHHHHHHHHHT------------T
T ss_pred -------------------CHHHHH--HHh------ccCceEEEEeCCCCCCCEeecHHHHHHHHHH------------c
Confidence 256677 444 4679999999999999999999999999998 9
Q ss_pred CeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCcc--eEEEEec-hhHhhhccccccCceEEecccchhhhhhc
Q 010538 243 RWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGL--GALIMRN-DAAKLLKNTYFSGGTVAASIADIDFVKRR 319 (508)
Q Consensus 243 g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G~--G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~ 319 (508)
|+++|+|++|+.|.....+ ..++|+++.|+||++++|.|+ |++++++ ++++.+.+...
T Consensus 247 gi~livDea~~~g~~~~~~-~~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~------------------ 307 (464)
T 1ibj_A 247 GALVLVDNSIMSPVLSRPL-ELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQN------------------ 307 (464)
T ss_dssp TCEEEEECTTTCTTTCCGG-GTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHH------------------
T ss_pred CCEEEEECCCcccccCChh-hcCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHH------------------
Confidence 9999999999887642122 257999999999998878775 9999986 66655543310
Q ss_pred cCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH--hcc--cCCCCCceEEEecCCCCCcccCC
Q 010538 320 QGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVL--LSL--RHENGADVCTIYGTYTSEVSYHD 395 (508)
Q Consensus 320 ~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L--~~l--~~~~~~~~~~~~~~~~~~~~~~~ 395 (508)
...++.+....++..++++.+.. .++...+....+.+++.+.- .+. +.....++++++.+... .
T Consensus 308 ------~~g~~~~~~~~~a~~~al~~~~~-r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~-----g 375 (464)
T 1ibj_A 308 ------SEGSGLAPFDCWLCLRGIKTMAL-RIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAK-----G 375 (464)
T ss_dssp ------HTTCBCCHHHHHHHHHHHTTHHH-HHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCS-----C
T ss_pred ------hcCCCCCHHHHHHHHhchhhHHH-HHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCC-----C
Confidence 01122233333333334432111 12222233333333333210 000 00011234555444321 1
Q ss_pred CCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCC----CCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCC
Q 010538 396 TGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGC----FCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKP 471 (508)
Q Consensus 396 ~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~----~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 471 (508)
.+++++|.+++.+ ....+.+.|...||.++.|. .|.+.... ..+. +++.+.++ +..
T Consensus 376 ~g~~~~~~l~~~~----~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~-~~~~-~~~~~~~~--------------g~~ 435 (464)
T 1ibj_A 376 AGSVFSFITGSVA----LSKHLVETTKYFSIAVSFGSVKSLISMPCFMS-HASI-PAEVREAR--------------GLT 435 (464)
T ss_dssp CCSEEEEECSCHH----HHHHHHHHCSSSEECSCCCSSSCEEECTTTTT-TCSC-CSSSSSSS--------------SCC
T ss_pred CceEEEEEECCHH----HHHHHHHhcCcceEeecCCCCceeeecccccc-cccC-CHHHHHhc--------------CCC
Confidence 3789999984310 11236666777899999886 33321100 0000 00011111 123
Q ss_pred CceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 472 TGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 472 ~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
++.+|+|++. ||++.+++.|++.++
T Consensus 436 ~~~iRlsvg~----edi~~li~~L~~al~ 460 (464)
T 1ibj_A 436 EDLVRISAGI----EDVDDLISDLDIAFK 460 (464)
T ss_dssp TTCEEEECCS----SCHHHHHHHHHHHHH
T ss_pred cCeEEEEeCC----CCHHHHHHHHHHHHh
Confidence 5789999996 889999999887764
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.4e-23 Score=212.90 Aligned_cols=316 Identities=15% Similarity=0.057 Sum_probs=212.1
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEEcc
Q 010538 82 TCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDV 160 (508)
Q Consensus 82 ~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~ 160 (508)
.....+++++++++++|.+ ++++++|+++|+.+++.++ .++|++|+++...|+++..... .++..|++++.+|.
T Consensus 79 ~~p~~~~l~~~la~~~g~~----~~~~~~sG~~Ai~~al~~l-~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~ 153 (414)
T 3ndn_A 79 GNPTVSVFEERLRLIEGAP----AAFATASGMAAVFTSLGAL-LGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDG 153 (414)
T ss_dssp CCHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHTT-CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT
T ss_pred CChHHHHHHHHHHHHHCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCC
Confidence 3456788999999999973 5788899999999999998 7889999999988887766544 35668999999987
Q ss_pred CCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCC
Q 010538 161 EEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFS 240 (508)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~ 240 (508)
+ |+++++ +++ .++|++|++++++||||.+.|+++|.++|++
T Consensus 154 ~--------------------d~~~l~--~ai------~~~t~~v~le~p~NptG~~~~l~~i~~la~~----------- 194 (414)
T 3ndn_A 154 D--------------------DLSQWE--RAL------SVPTQAVFFETPSNPMQSLVDIAAVTELAHA----------- 194 (414)
T ss_dssp T--------------------CHHHHH--HHT------SSCCSEEEEESSCTTTCCCCCHHHHHHHHHH-----------
T ss_pred C--------------------CHHHHH--Hhc------CCCCeEEEEECCCCCCCccccHHHHHHHHHH-----------
Confidence 5 256667 444 4678999999999999999999999999998
Q ss_pred CCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc---ceEEEEechhHh-hhccccccCceEEecccchhhh
Q 010538 241 KGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG---LGALIMRNDAAK-LLKNTYFSGGTVAASIADIDFV 316 (508)
Q Consensus 241 ~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G---~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~~~~~~ 316 (508)
+|+++|+|++|+.|.....+ ..++|+++.|++|+++ +.| .|+++++++.+. .++...
T Consensus 195 -~g~~livDe~~~~~~~~~~~-~~g~div~~S~sK~l~-~~G~~~~G~vv~~~~~~~~~l~~~~---------------- 255 (414)
T 3ndn_A 195 -AGAKVVLDNVFATPLLQQGF-PLGVDVVVYSGTKHID-GQGRVLGGAILGDREYIDGPVQKLM---------------- 255 (414)
T ss_dssp -TTCEEEEECTTTHHHHCCCG-GGTCSEEEEETTTTTT-CSSCCCCEEEEECHHHHTTHHHHHH----------------
T ss_pred -cCCEEEEECCCcccccCCch-hcCCCeEeccCCcccc-CCCCceEEEEEECHHHHHHHHHHHH----------------
Confidence 99999999999866433323 4578999999999999 545 699999887754 333211
Q ss_pred hhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEE-EecCCCCCccc--
Q 010538 317 KRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCT-IYGTYTSEVSY-- 393 (508)
Q Consensus 317 ~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~-~~~~~~~~~~~-- 393 (508)
....++.+....+.+...++. +....++..+.++++.+.|++.+ .++ +..|.-. ..+
T Consensus 256 --------~~~g~~~~~~~a~~~~~~l~~-----l~~r~~~~~~~a~~l~~~L~~~p------~v~~v~~p~l~-~~p~~ 315 (414)
T 3ndn_A 256 --------RHTGPAMSAFNAWVLLKGLET-----LAIRVQHSNASAQRIAEFLNGHP------SVRWVRYPYLP-SHPQY 315 (414)
T ss_dssp --------HHHCCCCCHHHHHHHHHHGGG-----HHHHHHHHHHHHHHHHHHHHTCT------TEEEEECTTST-TSTTH
T ss_pred --------HHcCCCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhcCC------CEeEEECCCCC-CCcCH
Confidence 001122232222222222222 45566777888889999998873 454 3333210 000
Q ss_pred -------CCCCceEEEEeeCCCC-CccCHHHHHHHHhhCCCeeccCCCCCch---HHHhhcCCChhhhhhhhhcCCccCC
Q 010538 394 -------HDTGSMVSFNLKRPDG-SWFGYREVEKLASLSGIQLRTGCFCNPG---ACAKYLGLSHSDLLSNIEAGHVCWD 462 (508)
Q Consensus 394 -------~~~~~~v~~~~~~~~~-~~~~~~~l~~~L~~~gI~v~~g~~~~~~---~~~~~~~~~~s~~~~~~~~~~~~~~ 462 (508)
...+++++|.+++... ..-....+.+.|+..++.++.|..|+.. ... ....-++....++|.
T Consensus 316 ~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~-~~~~~~~~~~~~~g~------ 388 (414)
T 3ndn_A 316 DLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLIDISNNLGDAKSLVTHPATT-THRAMGPEGRAAIGL------ 388 (414)
T ss_dssp HHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHCSSSEECSCCSCSSCEEECGGGT-TTCTTHHHHHHHTTC------
T ss_pred HHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhCccceEcCCCCCCCceeeCcccc-ccccCCHHHHHhcCC------
Confidence 0137899999975300 0011234667777778888888766541 110 000011222333443
Q ss_pred CccccCCCCCceEEEecCCCCCHHHHHHHHHhh
Q 010538 463 DNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSS 495 (508)
Q Consensus 463 ~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~ 495 (508)
.++.||+|++..+.++-++.+.++|
T Consensus 389 --------~~~~iRlsvG~e~~~dli~dl~~al 413 (414)
T 3ndn_A 389 --------GDGVVRISVGLEDTDDLIADIDRAL 413 (414)
T ss_dssp --------CTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred --------CCCeEEEEeCcCCHHHHHHHHHHhh
Confidence 4789999999877666666665554
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=5.5e-24 Score=224.62 Aligned_cols=367 Identities=14% Similarity=0.093 Sum_probs=219.8
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKL 118 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~ 118 (508)
.+..|+|+.+..+. +.+.+++.+.+.. ....|.. .....+++++++++++. + +++||+|+|+|+++
T Consensus 41 ~g~~ylD~~~~~~~-~~v~~a~~~~~~~-----~~~~y~~----~~~~~~l~~~la~~~~~--~--~v~~t~ggt~A~~~ 106 (467)
T 1ax4_A 41 SSAVYIDLLTDSGT-NAMSDHQWAAMIT-----GDEAYAG----SRNYYDLKDKAKELFNY--D--YIIPAHQGRGAENI 106 (467)
T ss_dssp GGGCSEECSCSSSC-CCEEHHHHHHHHT-----CCCCSSS----CHHHHHHHHHHHHHHCC--C--EEEEESSHHHHHHH
T ss_pred CCceeeecccCcCC-HHHHHHHHHHHhh-----ccccccc----CccHHHHHHHHHHHcCC--C--cEEEcCCcHHHHHH
Confidence 45679999777654 5555555443321 1111211 12356789999999987 4 79999999999999
Q ss_pred HHhhcCCC----CCCe---EEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCC
Q 010538 119 VGEAFPWS----HQSS---YMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGAS 191 (508)
Q Consensus 119 ~~~~l~~~----~g~~---vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~ 191 (508)
++.++ .. +|+. |+++...|+++. ..+...|.+++.++.......+. .....-..|+++++ ++
T Consensus 107 al~~~-~~~~~~~Gd~~~~viv~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~d~~~le--~~ 175 (467)
T 1ax4_A 107 LFPVL-LKYKQKEGKAKNPVFISNFHFDTTA---AHVELNGCKAINIVTEKAFDSET-----YDDWKGDFDIKKLK--EN 175 (467)
T ss_dssp HHHHH-HHHHHHTTCCSSCEEEESSCCHHHH---HHHHHTTCEEEECBCGGGGCTTS-----CCTTTTCBCHHHHH--HH
T ss_pred HHHHH-HHhhccCCCccceEEEeccccchhh---HHHhccCCceecccccccccccc-----cCCcccccCHHHHH--HH
Confidence 99988 45 7887 887743334433 33444688888776432100000 00000012678887 55
Q ss_pred CCCCCCCCCCceEEEEeCCCCCC-ccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC-----------CCCCC
Q 010538 192 FPERDPAGDAYNLFAFPSECNFS-GSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC-----------VTQPP 259 (508)
Q Consensus 192 l~~~~~~~~~t~lv~~~~~~n~t-G~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~-----------g~~~~ 259 (508)
+.+. ..++|++|++++++|++ |.++|.+.+.++++ +|++||+++|+|++|+. +...+
T Consensus 176 i~~~--~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~---------la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~ 244 (467)
T 1ax4_A 176 IAQH--GADNIVAIVSTVTCNSAGGQPVSMSNLKEVYE---------IAKQHGIFVVMDSARFCENAYFIKARDPKYKNA 244 (467)
T ss_dssp HHHH--CGGGEEEEEEESSBTTTTSBCCCHHHHHHHHH---------HHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTC
T ss_pred HHhc--CCCCeeEEEEeccccCCCccCCChhHHHHHHH---------HHHHcCCEEEEEchhhhhcchhccccccccCCC
Confidence 5321 01368999999999999 89888765444444 34449999999998765 44444
Q ss_pred CCCC------CCCcEEEEeccccccCCCcceEEEEe-c-hhHhhhccccc--cCceEEecccchhhhhhccCccccccCC
Q 010538 260 DLSK------YPVDFVVMSFYKIFGYPTGLGALIMR-N-DAAKLLKNTYF--SGGTVAASIADIDFVKRRQGVEELFEDG 329 (508)
Q Consensus 260 d~~~------~~~D~~~~S~~K~~g~P~G~G~l~~~-~-~~~~~l~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~g 329 (508)
++.. ..+|++++|+||++|.|.| |+++.+ + ++++.+..... ++. ...+
T Consensus 245 ~~~~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~d~~~l~~~~~~~~~~~~~~---------------------~~~~ 302 (467)
T 1ax4_A 245 TIKEVIFDMYKYADALTMSAKKDPLLNIG-GLVAIRDNEEIFTLARQRCVPMEGF---------------------VTYG 302 (467)
T ss_dssp CHHHHHHHHGGGCSEEEEETTSTTCCSSC-EEEEESSCHHHHHHHHHHHHHHTCS---------------------TTTT
T ss_pred chhhhhhhhccccceEEEeccccCCCCcc-eEEEeCCHHHHHHHHHhhccccccc---------------------cccC
Confidence 4322 2378999999999984535 677677 5 66655443211 110 1123
Q ss_pred CCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeC---
Q 010538 330 TASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKR--- 406 (508)
Q Consensus 330 t~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--- 406 (508)
+.+...+.++..+++.+.+ ++..++..++++++.+.|++. ++++..+.. +.++++.+..
T Consensus 303 ~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~-------~~~~~~~~~--------~~~~~~~~~~~~~ 364 (467)
T 1ax4_A 303 GLAGRDMAAMVQGLEEGTE---EEYLHYRIGQVKYLGDRLREA-------GIPIQYPTG--------GHAVFVDCKKLVP 364 (467)
T ss_dssp TCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHT-------TCCBCSSCC--------SSEEEEESTTTCT
T ss_pred CccchHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHhC-------CCCcccCCC--------ceEEEEehhhhcc
Confidence 4444445555545543211 223344457778888888763 465554432 6788887311
Q ss_pred -CCCCccCHHHHHHHH-hhCCCeecc-CCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC-
Q 010538 407 -PDGSWFGYREVEKLA-SLSGIQLRT-GCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM- 482 (508)
Q Consensus 407 -~~~~~~~~~~l~~~L-~~~gI~v~~-g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~- 482 (508)
.....++..++.+.| .++||.+.+ |..+.... ++ -|. + .....+.+|+|+..+
T Consensus 365 ~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~--------~~-----~g~-----~-----~~~~~~~iRls~~~~~ 421 (467)
T 1ax4_A 365 QIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRD--------PA-----TGE-----Q-----KHADMEFMRLTIARRV 421 (467)
T ss_dssp TSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBC--------TT-----TCS-----B-----CCCSCCEEEEECCTTS
T ss_pred ccccCCCCHHHHHHHHHHhcCceeeecCccccccc--------cc-----ccc-----c-----cccccceEEEeccccc
Confidence 111112345577777 899999987 54211100 00 000 0 001147899999954
Q ss_pred CCHHHHHHHHHhhhhhhhhhhh
Q 010538 483 STFEDAKVNRCSSFDFVNFSQF 504 (508)
Q Consensus 483 ~t~eev~~l~~~~~~~~~~~~~ 504 (508)
+|.+|++++++.|+++++.++.
T Consensus 422 ~t~e~i~~~~~~l~~~~~~~~~ 443 (467)
T 1ax4_A 422 YTNDHMDYIADALIGLKEKFAT 443 (467)
T ss_dssp SCHHHHHHHHHHHHTTHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999998876544
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.4e-22 Score=208.11 Aligned_cols=350 Identities=11% Similarity=0.030 Sum_probs=220.2
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCC-CCceEEEcCC
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASM-KDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~-~~~~i~~t~g 111 (508)
++..|+|..+ .+.++|.+++++.+.+ .. .......+ .......++++.++++++.+. + +|++|+|
T Consensus 39 ~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~-~~-~~~~~~~~----~~~~~~~~l~~~la~~~~~~~~~--~v~~~~g 110 (426)
T 1sff_A 39 EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQL-KK-LSHTCFQV----LAYEPYLELCEIMNQKVPGDFAK--KTLLVTT 110 (426)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHT-TT-CSCCCTTT----EECHHHHHHHHHHHHHSSCSSCE--EEEEESS
T ss_pred CCCEEEEcccChhhcccCCCCHHHHHHHHHHH-Hh-CCCccccc----cCCHHHHHHHHHHHHhCCccccc--EEEEeCc
Confidence 4567888753 3446888888876644 22 11111111 123457789999999994333 5 8999999
Q ss_pred hHHHHHHHHh---hcCCCCCCeEEEecccc-cchHHHHHHHHh-------cCC---eEEEEccCCccCcccccccccccc
Q 010538 112 ATAALKLVGE---AFPWSHQSSYMYTMENH-NSVLGIREYALS-------QGA---AAFAIDVEEAVDNDGLSESLVTST 177 (508)
Q Consensus 112 ~t~al~~~~~---~l~~~~g~~vl~~~~~h-~s~~~~~~~~~~-------~G~---~v~~v~~~~~~~~~~l~~~~~~~~ 177 (508)
+++|+++++. ++ ..++ .|++....| .....+...... .+. .++.+|.+.+.....
T Consensus 111 ~~~a~~~~~~~a~~~-~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~--------- 179 (426)
T 1sff_A 111 GSEAVENAVKIARAA-TKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGIS--------- 179 (426)
T ss_dssp HHHHHHHHHHHHHHH-HTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBC---------
T ss_pred hHHHHHHHHHHHHHh-hCCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccc---------
Confidence 9999999987 55 3455 666655444 445445443210 011 266777653110000
Q ss_pred ccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecccc
Q 010538 178 KISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKG 253 (508)
Q Consensus 178 ~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~ 253 (508)
-..|+++++ +++++. ...+++++|+++...+.||.+.+ +++|.++|++ +|+++|+|++|+
T Consensus 180 -~~~d~~~l~--~~l~~~-~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~------------~~~~li~De~~~ 243 (426)
T 1sff_A 180 -EDDAIASIH--RIFKND-AAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDE------------HGIMLIADEVQS 243 (426)
T ss_dssp -HHHHHHHHH--HHHHHT-CCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHH------------HTCEEEEECTTT
T ss_pred -hHHHHHHHH--HHHHhc-cCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHH------------cCCEEEEechhh
Confidence 011566776 444210 01146788888554444997777 7788888886 999999999998
Q ss_pred -CCCCC----CCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccc
Q 010538 254 -CVTQP----PDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELF 326 (508)
Q Consensus 254 -~g~~~----~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 326 (508)
++... ++.....+|++ |++|+++ + | +|++++++++++.+.+...+
T Consensus 244 ~~~~~g~~~~~~~~~~~~di~--s~sK~~~-~-GlriG~~~~~~~~~~~l~~~~~~------------------------ 295 (426)
T 1sff_A 244 GAGRTGTLFAMEQMGVAPDLT--TFAKSIA-G-GFPLAGVTGRAEVMDAVAPGGLG------------------------ 295 (426)
T ss_dssp TTTTTSSSSGGGGTTSCCSEE--EECGGGG-T-SSCCEEEEEEHHHHTTSCTTSBC------------------------
T ss_pred ccCcccchhhhhhcCCCCCEE--EEccccc-C-CCceEEEEEcHHHHhhhccCCcC------------------------
Confidence 32211 12222346765 6779999 7 7 69999999887655432100
Q ss_pred cCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeC
Q 010538 327 EDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKR 406 (508)
Q Consensus 327 ~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 406 (508)
...+.+....+++.++++++.+. .+.+++.++++++.+.|+++.. ..+.+....+ .++++++.+.+
T Consensus 296 ~~~~~~~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~---------~g~~~~~~~~~ 361 (426)
T 1sff_A 296 GTYAGNPIACVAALEVLKVFEQE---NLLQKANDLGQKLKDGLLAIAE--KHPEIGDVRG---------LGAMIAIELFE 361 (426)
T ss_dssp CSSSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHH--TCTTEEEEEE---------ETTEEEEEEBG
T ss_pred cCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHH--hCCCeEEEEE---------EEEEEEEEEec
Confidence 11234666777778888887653 5678888899999988876410 0022322222 16889998853
Q ss_pred CC----CCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC
Q 010538 407 PD----GSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM 482 (508)
Q Consensus 407 ~~----~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 482 (508)
.. ....+..++.+.|.++||.+++|.. ..+++|+++++.
T Consensus 362 ~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~-------------------------------------~~~~iRi~~~~~ 404 (426)
T 1sff_A 362 DGDHNKPDAKLTAEIVARARDKGLILLSCGP-------------------------------------YYNVLRILVPLT 404 (426)
T ss_dssp GGCTTSBCHHHHHHHHHHHHHTTEECEEEST-------------------------------------TSCEEEECCCTT
T ss_pred CccccCCChHHHHHHHHHHHHCCcEEecCCC-------------------------------------CCCEEEEECCcc
Confidence 10 0112334578888889999988642 147899999999
Q ss_pred CCHHHHHHHHHhhhhhhhhh
Q 010538 483 STFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 483 ~t~eev~~l~~~~~~~~~~~ 502 (508)
+|.+|++++++.|+++++.+
T Consensus 405 ~~~~~i~~~~~~l~~~l~~~ 424 (426)
T 1sff_A 405 IEDAQIRQGLEIISQCFDEA 424 (426)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887644
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-24 Score=221.74 Aligned_cols=334 Identities=12% Similarity=0.020 Sum_probs=212.8
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc-CC--CCCCceEEE-
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF-NA--SMKDYKCIF- 108 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~-~~--~~~~~~i~~- 108 (508)
++.+.|..+. ..++++.+.+++.+.. .. .. ...|... ....++|+.+++++ +. +++ +|++
T Consensus 26 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~-~~--~~-~~~y~~~----~g~~~lr~~la~~~~~~~~~~~--~v~~~ 95 (394)
T 2ay1_A 26 QGKIDLGVGVYKDATGHTPIMRAVHAAEQRML-ET--ET-TKTYAGL----SGEPEFQKAMGELILGDGLKSE--TTATL 95 (394)
T ss_dssp TTCEECCCCSCCCTTSCCCCCHHHHHHHHHHH-HH--CC-CCCCCCS----SCCHHHHHHHHHHHHGGGCCGG--GEEEE
T ss_pred ccccccccceeeCCCCCccCcHHHHHHHHHhc-CC--cc-cCCCCCC----CCcHHHHHHHHHHHhCCCCCcc--cEEEE
Confidence 4566666554 2355677777664432 21 01 1112111 11456778888886 54 566 7999
Q ss_pred -cCChHHHHHHHHhhcC-CCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccC--CccCccccccccccccccccchh
Q 010538 109 -TSGATAALKLVGEAFP-WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVE--EAVDNDGLSESLVTSTKISLLPI 184 (508)
Q Consensus 109 -t~g~t~al~~~~~~l~-~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~--~~~~~~~l~~~~~~~~~~~~d~~ 184 (508)
|+|+++|+++++.++. +.+|++|+++...|+++.. .++..|.+++.+|.+ .+..+ |++
T Consensus 96 ~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~---------------d~~ 157 (394)
T 2ay1_A 96 ATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVS---IMNFMGLPVQTYRYFDAETRGV---------------DFE 157 (394)
T ss_dssp EEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHH---HHHHHTCCEEEEECEETTTTEE---------------CHH
T ss_pred ecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHH---HHHHcCCceEEEecccccCCcc---------------CHH
Confidence 9999999999987763 2478899988766665544 445569999999985 22333 567
Q ss_pred hhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCC------
Q 010538 185 QRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQP------ 258 (508)
Q Consensus 185 ~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~------ 258 (508)
+++ +++++. .++++++++++++||||.++|.+++.++++ +|+++|+++|+|++|+.....
T Consensus 158 ~l~--~~l~~~---~~~~~~~~~~~~~nptG~~~~~~~l~~i~~---------~~~~~~~~li~De~~~~~~~~~~~~~~ 223 (394)
T 2ay1_A 158 GMK--ADLAAA---KKGDMVLLHGCCHNPTGANLTLDQWAEIAS---------ILEKTGALPLIDLAYQGFGDGLEEDAA 223 (394)
T ss_dssp HHH--HHHHTC---CTTCEEEEESSSCTTTCCCCCHHHHHHHHH---------HHHHHTCEEEEEECCTTSSSCHHHHHH
T ss_pred HHH--HHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHH---------HHHHCCCEEEEecCccccccCcccchH
Confidence 777 555321 235788889999999999999876655554 344499999999999864321
Q ss_pred -CC-CCCCC-CcEEEEeccccccCCCc--ceEEEE---echhHhhhccccccCceEEecccchhhhhhccCccccccCCC
Q 010538 259 -PD-LSKYP-VDFVVMSFYKIFGYPTG--LGALIM---RNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGT 330 (508)
Q Consensus 259 -~d-~~~~~-~D~~~~S~~K~~g~P~G--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt 330 (508)
+. +...+ .++++.|+||++| ++| +|++++ +++.++.+...+.. ..+...++
T Consensus 224 ~~~~~~~~~~~~i~~~s~sK~~~-~~G~riG~~~~~~~~~~~~~~l~~~~~~--------------------~~~~~~~~ 282 (394)
T 2ay1_A 224 GTRLIASRIPEVLIAASCSKNFG-IYRERTGCLLALCADAATRELAQGAMAF--------------------LNRQTYSF 282 (394)
T ss_dssp HHHHHHHHCSSEEEEEECTTTTT-CGGGCEEEEEEECSSHHHHHHHHHHHHH--------------------HHHTTTSS
T ss_pred HHHHHhhcCCCEEEEEeccCCCc-CcCCccceEEEEeCCHHHHHHHHHHHHH--------------------HHhhhcCC
Confidence 21 21222 3477889999998 668 599998 55554333221100 00111123
Q ss_pred CChhHHHHHHHHHHHHH-----hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEee
Q 010538 331 ASFLSIASIRHGFNLIN-----SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLK 405 (508)
Q Consensus 331 ~~~~~~~~l~~al~~~~-----~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 405 (508)
++....+++.++++... ..+++.+.++++++++++.+.|+++.. ..++++..+.. +.++++.++
T Consensus 283 ~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~--------g~~~~~~~~ 351 (394)
T 2ay1_A 283 PPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSG---SDRFGFVAEHR--------GMFSRLGAT 351 (394)
T ss_dssp CCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---SSTTTHHHHCC--------SSEEECCCC
T ss_pred CChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCeeEEcCCc--------eEEEeeCCC
Confidence 34555555555555320 124788899999999999999987620 00244443332 566665442
Q ss_pred CCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCH
Q 010538 406 RPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTF 485 (508)
Q Consensus 406 ~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ 485 (508)
...+.+.|.++||.+++ .+|+|++ .+|.
T Consensus 352 --------~~~~~~~l~~~gi~v~~-------------------------------------------~~Ris~~-~~~~ 379 (394)
T 2ay1_A 352 --------PEQVKRIKEEFGIYMVG-------------------------------------------DSRINIA-GLND 379 (394)
T ss_dssp --------HHHHHHHHHHHCEECCT-------------------------------------------TCEEEGG-GCCT
T ss_pred --------HHHHHHHHHhCCEEecC-------------------------------------------CCeEEee-cCCH
Confidence 12477888889999764 1699999 5899
Q ss_pred HHHHHHHHhhhhh
Q 010538 486 EDAKVNRCSSFDF 498 (508)
Q Consensus 486 eev~~l~~~~~~~ 498 (508)
+|+++++++|++.
T Consensus 380 ~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 380 NTIPILARAIIEV 392 (394)
T ss_dssp TTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHc
Confidence 9999999998864
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.90 E-value=4.2e-24 Score=220.28 Aligned_cols=323 Identities=12% Similarity=-0.007 Sum_probs=206.6
Q ss_pred CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc---C---CCCCCceEEE--cCChHHHHHHHH
Q 010538 49 ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF---N---ASMKDYKCIF--TSGATAALKLVG 120 (508)
Q Consensus 49 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~---~---~~~~~~~i~~--t~g~t~al~~~~ 120 (508)
..++++.+.+++.+.+ ... .. ..|.. .....++|+.+++++ + ++++ +|++ |+|+++|+++++
T Consensus 42 ~~~~~~~v~~a~~~~~-~~~--~~-~~y~~----~~g~~~lr~~la~~~~~~~~~~~~~~--~v~~~~~~g~~~a~~~~~ 111 (396)
T 2q7w_A 42 KTPVLTSVKKAEQYLL-ENE--TT-KNYLG----IDGIPEFGRCTQELLFGKGSALINDK--RARTAQTPGGTGALRVAA 111 (396)
T ss_dssp CCCCCHHHHHHHHHHH-HHC--CC-CCCCC----TTCCHHHHHHHHHHHHCTTCHHHHTT--CEEEEEESHHHHHHHHHH
T ss_pred CccCcHHHHHHHHhhc-Ccc--cc-cCCCC----CCCCHHHHHHHHHHHhcCCCCccccc--cEEEEecccchhhHHHHH
Confidence 3466788887765433 211 11 11211 112466788888887 2 2466 7888 999999999998
Q ss_pred hhcC-CCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccC--CccCccccccccccccccccchhhhhcCCCCCCCCC
Q 010538 121 EAFP-WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVE--EAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP 197 (508)
Q Consensus 121 ~~l~-~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~--~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~ 197 (508)
.++. +.+|++|++....|+++. ..++..|.+++.+|.+ .+..+ |+++++ +++++.
T Consensus 112 ~~~~~~~~gd~Vl~~~p~y~~~~---~~~~~~g~~~~~~~~~~~~~~~~---------------d~~~l~--~~l~~~-- 169 (396)
T 2q7w_A 112 DFLAKNTSVKRVWVSNPSWPNHK---SVFNSAGLEVREYAYYDAENHTL---------------DFDALI--NSLNEA-- 169 (396)
T ss_dssp HHHHHHSCCCEEEEEESCCTHHH---HHHHHTTCEEEEEECEETTTTEE---------------CHHHHH--HHHTTC--
T ss_pred HHHHHhCCCCEEEEcCCCchhHH---HHHHHcCCceEEEecccCCCCCc---------------CHHHHH--HHHHhC--
Confidence 7653 357899998887666654 4455579999999984 22333 577777 555321
Q ss_pred CCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCC-----CCCC---C-CCCcE
Q 010538 198 AGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQP-----PDLS---K-YPVDF 268 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~-----~d~~---~-~~~D~ 268 (508)
.++++++++++++||||.++|.+++.++++ +|+++|+++|+|++|+..... .++. . .+.++
T Consensus 170 -~~~~~~v~~~~p~nptG~~~~~~~l~~l~~---------~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (396)
T 2q7w_A 170 -QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQ---------LSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELI 239 (396)
T ss_dssp -CTTCEEEEECSSCTTTCCCCCHHHHHHHHH---------HHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEE
T ss_pred -CCCCEEEEeCCCCCCCCCCCCHHHHHHHHH---------HHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEE
Confidence 245789999999999999999876555554 344599999999998753221 1221 1 13468
Q ss_pred EEEeccccccCCCc--ceEEEE---echhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHH
Q 010538 269 VVMSFYKIFGYPTG--LGALIM---RNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGF 343 (508)
Q Consensus 269 ~~~S~~K~~g~P~G--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al 343 (508)
++.|+||++| ++| +|++++ +++.++.+...+.. ..+...++++.....++.+++
T Consensus 240 ~~~s~sK~~~-~~G~riG~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~a~~~~l 298 (396)
T 2q7w_A 240 VASSYSXNFG-LYNERVGACTLVAADSETVDRAFSQMKA--------------------AIRANYSNPPAHGASVVATIL 298 (396)
T ss_dssp EEEECTTTTT-CGGGCCEEEEEECSSHHHHHHHHHHHHH--------------------HHHTTTSSCCHHHHHHHHHHH
T ss_pred EEEecccccc-ccccccceEEEEcCCHHHHHHHHHHHHH--------------------HHhhccCCCCcHHHHHHHHHh
Confidence 8999999999 778 699997 45433322211100 001112334555555555555
Q ss_pred HHH-----HhcChHHHHHHHHHHHHHHHHHHhcccCCCCCc-eEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHH
Q 010538 344 NLI-----NSLTVPAICRHIASLGMYVRKVLLSLRHENGAD-VCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREV 417 (508)
Q Consensus 344 ~~~-----~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l 417 (508)
+.. -..+++++.+++.++++++.+.|+++.. + ++++..+.. +.++++.++ ...+
T Consensus 299 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~----~~~~~~~~~~~--------~~~~~~~~~--------~~~~ 358 (396)
T 2q7w_A 299 SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGA----NRDFSFIIKQN--------GMFSFSGLT--------KEQV 358 (396)
T ss_dssp TSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTC----CSCCTHHHHCC--------SSEEECCCC--------HHHH
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCcceecCCC--------ceEEEecCC--------HHHH
Confidence 422 0124677888999999999999988620 0 244444332 455554332 2347
Q ss_pred HHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhh
Q 010538 418 EKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFD 497 (508)
Q Consensus 418 ~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~ 497 (508)
.+.|.++||.+++ .+|||++.. |.+|+++++++|++
T Consensus 359 ~~~l~~~gv~v~~-------------------------------------------~~Ris~~~~-~~e~i~~~~~~l~~ 394 (396)
T 2q7w_A 359 LRLREEFGVYAVA-------------------------------------------SGRVNVAGM-TPDNMAPLCEAIVA 394 (396)
T ss_dssp HHHHHHHCEECCT-------------------------------------------TCEEEGGGC-CTTTHHHHHHHHHH
T ss_pred HHHHHhcCeeecC-------------------------------------------CceEEEeec-CHHHHHHHHHHHHh
Confidence 7788889999764 269999954 99999999999886
Q ss_pred h
Q 010538 498 F 498 (508)
Q Consensus 498 ~ 498 (508)
.
T Consensus 395 ~ 395 (396)
T 2q7w_A 395 V 395 (396)
T ss_dssp H
T ss_pred c
Confidence 5
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-23 Score=217.41 Aligned_cols=340 Identities=14% Similarity=0.021 Sum_probs=217.2
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc-CC-----CCCCceE
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF-NA-----SMKDYKC 106 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~-~~-----~~~~~~i 106 (508)
++.+.|..+.. .++++.+.+++.+ .... ... ...|.. .....++|+.+++++ +. +++ +|
T Consensus 30 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~-~~~~-~~~-~~~y~~----~~g~~~lr~~la~~~~~~~~~~~~~~--~v 100 (412)
T 1ajs_A 30 PRKVNLGVGAYRTDDCQPWVLPVVRKVEQR-IANN-SSL-NHEYLP----ILGLAEFRTCASRLALGDDSPALQEK--RV 100 (412)
T ss_dssp TTCEECCSCCCCCTTSCCCCCHHHHHHHHH-HHTC-TTC-CCCCCC----TTCCHHHHHHHHHHHHCTTCHHHHTT--CE
T ss_pred CCceeeccceecCCCCCccccHHHHHHHHH-hhhC-hhh-ccCCCC----CCCCHHHHHHHHHHHhcCCCCccCCC--cE
Confidence 45666666542 3456777776644 3311 001 111211 112466788888888 43 667 89
Q ss_pred EE--cCChHHHHHHHHhhcC-CCCC-----CeEEEecccccchHHHHHHHHhcCCe-EEEEccC--CccCcccccccccc
Q 010538 107 IF--TSGATAALKLVGEAFP-WSHQ-----SSYMYTMENHNSVLGIREYALSQGAA-AFAIDVE--EAVDNDGLSESLVT 175 (508)
Q Consensus 107 ~~--t~g~t~al~~~~~~l~-~~~g-----~~vl~~~~~h~s~~~~~~~~~~~G~~-v~~v~~~--~~~~~~~l~~~~~~ 175 (508)
++ |+|+++|+.+++..+. ..+| ++|+++...|+++. ..++..|.+ ++.+|.+ .+..+
T Consensus 101 ~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~---~~~~~~g~~~~~~~~~~~~~~~~~--------- 168 (412)
T 1ajs_A 101 GGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHN---GVFTTAGFKDIRSYRYWDTEKRGL--------- 168 (412)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHH---HHHHHTTCSCEEEEECEETTTTEE---------
T ss_pred EEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHH---HHHHHcCCceeEEEeeecCCCCcc---------
Confidence 99 9999999999864321 3577 89998887777654 444557999 9999884 22223
Q ss_pred ccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC-
Q 010538 176 STKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC- 254 (508)
Q Consensus 176 ~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~- 254 (508)
|+++++ +++.+ ..++++++++++++||||.++|.+.+.++++ +|+++|+++|+|++++.
T Consensus 169 ------d~~~l~--~~l~~---~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~---------~~~~~~~~li~De~y~~~ 228 (412)
T 1ajs_A 169 ------DLQGFL--SDLEN---APEFSIFVLHACAHNPTGTDPTPEQWKQIAS---------VMKRRFLFPFFDSAYQGF 228 (412)
T ss_dssp ------CHHHHH--HHHHH---SCTTCEEEEESSSCTTTCCCCCHHHHHHHHH---------HHHHHTCEEEEEESCTTT
T ss_pred ------CHHHHH--HHHHh---CCCCcEEEEECCCCCCCCCCCCHHHHHHHHH---------HHHHCCCEEEEEcccccc
Confidence 577777 55532 1346789989999999999999876555554 34449999999999653
Q ss_pred CCC-----CCCCC----CCCCcEEEEeccccccCCCc--ceEEEE---echhHhhhccccccCceEEecccchhhhhhcc
Q 010538 255 VTQ-----PPDLS----KYPVDFVVMSFYKIFGYPTG--LGALIM---RNDAAKLLKNTYFSGGTVAASIADIDFVKRRQ 320 (508)
Q Consensus 255 g~~-----~~d~~----~~~~D~~~~S~~K~~g~P~G--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~ 320 (508)
+.. ...+. ..+.++++.|+||.+| |+| +|++++ +++.++.+...+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~riG~~~~~~~~~~~~~~~~~~~~~------------------ 289 (412)
T 1ajs_A 229 ASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFG-LYNERVGNLTVVAKEPDSILRVLSQMQK------------------ 289 (412)
T ss_dssp TTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSC-CGGGCEEEEEEECSSHHHHHHHHHHHHH------------------
T ss_pred cCCcccccchHHHHHhccCCcEEEEEecccccC-CCCcceEEEEEecCCHHHHHHHHHHHHH------------------
Confidence 322 11121 1133488999999999 778 799999 66643332111000
Q ss_pred CccccccCCCCChhHHHHHHHHHHHHH-----hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCC
Q 010538 321 GVEELFEDGTASFLSIASIRHGFNLIN-----SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHD 395 (508)
Q Consensus 321 ~~~~~~~~gt~~~~~~~~l~~al~~~~-----~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~ 395 (508)
..+...++++....+++.++++... ...++.++++++++++++.+.|+++.. +.++++..+..
T Consensus 290 --~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~------- 357 (412)
T 1ajs_A 290 --IVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKT---PGTWNHITDQI------- 357 (412)
T ss_dssp --HHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---SSCCHHHHHCC-------
T ss_pred --HHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---CCCeeEEcCCC-------
Confidence 0111123345555666666766432 224688899999999999999988620 01255444332
Q ss_pred CCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceE
Q 010538 396 TGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAI 475 (508)
Q Consensus 396 ~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i 475 (508)
+.++++.++ ...+.+.+.++||.+++ .+
T Consensus 358 -~~~~~~~~~--------~~~~~~~l~~~gv~v~~-------------------------------------------~~ 385 (412)
T 1ajs_A 358 -GMFSFTGLN--------PKQVEYLINQKHIYLLP-------------------------------------------SG 385 (412)
T ss_dssp -SSEEECCCC--------HHHHHHHHHTTCEECCT-------------------------------------------TS
T ss_pred -ceEEEeCCC--------HHHHHHHHHhCCEEecC-------------------------------------------Cc
Confidence 455544332 23466778889999764 16
Q ss_pred EEecCCCCCHHHHHHHHHhhhhhhhhhh
Q 010538 476 RVSFGYMSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 476 Ris~~~~~t~eev~~l~~~~~~~~~~~~ 503 (508)
|+|++. .|.+|++++++.|+++++.+|
T Consensus 386 Ris~~~-~~~~~i~~~~~~l~~~l~~~~ 412 (412)
T 1ajs_A 386 RINMCG-LTTKNLDYVATSIHEAVTKIQ 412 (412)
T ss_dssp EEEGGG-CCTTTHHHHHHHHHHHHHHCC
T ss_pred EEEeee-CCHHHHHHHHHHHHHHHHhcC
Confidence 999994 589999999999998876543
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-25 Score=231.73 Aligned_cols=338 Identities=10% Similarity=0.014 Sum_probs=218.9
Q ss_pred CCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHH----cC--CCCCCceEEEcCCh
Q 010538 40 GTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDY----FN--ASMKDYKCIFTSGA 112 (508)
Q Consensus 40 ~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~----~~--~~~~~~~i~~t~g~ 112 (508)
+.+.|..+... ++++.+.+++.+.. .. ....|... ..++++.++++ +| ++++ +|++|+|+
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~-~~----~~~~y~~~------~~~l~~~la~~l~~~~g~~~~~~--~v~~~~g~ 98 (392)
T 3b1d_A 32 QLLPAWIADMDFEVMPEVKQAIHDYA-EQ----LVYGYTYA------SDELLQAVLDWEKSEHQYSFDKE--DIVFVEGV 98 (392)
Confidence 55666655543 23455656554433 11 11112111 33445555554 45 5666 89999999
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC-ccCccccccccccccccccchhhhhcCCC
Q 010538 113 TAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE-AVDNDGLSESLVTSTKISLLPIQRRKGAS 191 (508)
Q Consensus 113 t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~~ 191 (508)
++|+.+++.++ .++|++|++....|+++... ++..|.+++.+|.+. ++.. ..|+++++ ++
T Consensus 99 ~~a~~~~~~~~-~~~gd~vl~~~p~~~~~~~~---~~~~g~~~~~~~~~~~~g~~-------------~~d~~~l~--~~ 159 (392)
T 3b1d_A 99 VPAISIAIQAF-TKEGEAVLINSPVYPPFARS---VRLNNRKLVSNSLKEENGLF-------------QIDFEQLE--ND 159 (392)
Confidence 99999999998 67889999888777766544 344588888888752 2211 11567777 55
Q ss_pred CCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC----CCCCCCC----
Q 010538 192 FPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT----QPPDLSK---- 263 (508)
Q Consensus 192 l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~----~~~d~~~---- 263 (508)
+. .+++++|++++++||||.++|.+.+.++++ +|+++|+++|+|++|+... .+.++..
T Consensus 160 l~-----~~~~~~v~~~~~~nptG~~~~~~~l~~l~~---------~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~ 225 (392)
T 3b1d_A 160 IV-----ENDVKLYLLCNPHNPGGRVWEREVLEQIGH---------LCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPD 225 (392)
Confidence 53 146788999999999999999666555555 4555999999999997622 2223321
Q ss_pred -CCCcEEEEeccccccCCCc--ceEEEEech-hHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHH
Q 010538 264 -YPVDFVVMSFYKIFGYPTG--LGALIMRND-AAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASI 339 (508)
Q Consensus 264 -~~~D~~~~S~~K~~g~P~G--~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l 339 (508)
.+.++++.|++|++| .+| +|+++++++ +++.+...... +..++++....+++
T Consensus 226 ~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~a~ 281 (392)
T 3b1d_A 226 FKDFALVLSSATKTFN-IAGTKNSYAIIENPTLCAQFKHQQLV-----------------------NNHHEVSSLGYIAT 281 (392)
Confidence 345688999999997 445 799998754 66555433111 11123444445555
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHhc-ccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHH
Q 010538 340 RHGFNLINSLTVPAICRHIASLGMYVRKVLLS-LRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVE 418 (508)
Q Consensus 340 ~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~ 418 (508)
.++++.. +..++++++++.++++++.+.|++ + +++++..+.+ +.+++++++... .+..++.
T Consensus 282 ~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~------~~~~~~~~~~--------~~~~~i~~~~~~---~~~~~l~ 343 (392)
T 3b1d_A 282 ETAYRYG-KPWLVALKAVLEENIQFAVEYFAQEA------PRLKVMKPQG--------TYLIWLDFSDYG---LTDDALF 343 (392)
Confidence 5566532 234678888899999999999987 5 3676665442 455567775420 1122366
Q ss_pred HHH-hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhh
Q 010538 419 KLA-SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFD 497 (508)
Q Consensus 419 ~~L-~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~ 497 (508)
+.| +++||.+++|..|... .++++|++++. +.++++.+++.|++
T Consensus 344 ~~l~~~~gi~v~~g~~f~~~---------------------------------~~~~iRi~~~~--~~e~i~~~l~~l~~ 388 (392)
T 3b1d_A 344 TLLHDQAKVILNRGSDYGSE---------------------------------GELHARLNIAA--PKSLVEEICKRIVC 388 (392)
Confidence 777 4789999998755321 25789999885 68999999998887
Q ss_pred hhh
Q 010538 498 FVN 500 (508)
Q Consensus 498 ~~~ 500 (508)
.++
T Consensus 389 ~l~ 391 (392)
T 3b1d_A 389 CLP 391 (392)
Confidence 653
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.1e-24 Score=215.21 Aligned_cols=296 Identities=10% Similarity=0.007 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCe--EEEecccccchHHHHHHHHhcCCeEEEEccC
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSS--YMYTMENHNSVLGIREYALSQGAAAFAIDVE 161 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~--vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~ 161 (508)
...++++++++++++.+.. ++++|+++|+.+++.++. .+|+. |+++...|++...........|.+++.+|.+
T Consensus 48 ~~~~~l~~~la~~~~~~~~----i~~~~g~~a~~~a~~~~~-~~g~~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 122 (359)
T 3pj0_A 48 AVIEDFETKIAKILGKQSA----VFFPSGTMAQQIALRIWA-DRKENRRVAYHPLSHLEIHEQDGLKELQQITPLLLGTA 122 (359)
T ss_dssp HHHHHHHHHHHHHHTCSEE----EEESCHHHHHHHHHHHHH-HHHTCCEEEECTTCHHHHSSTTHHHHHHCCEEEECSCT
T ss_pred HHHHHHHHHHHHHhCCCcE----EEeCCHHHHHHHHHHHHH-hcCCCcEEEEeccceeeehhcchHHHhcCceEEecCCc
Confidence 4578899999999998643 555888899999998884 44444 6666666654432222223358999998873
Q ss_pred CccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCC-ccccCHHHHHHHHcCCccccccCCCC
Q 010538 162 EAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFS-GSRFNLDLINIMKKNPERILEISPFS 240 (508)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~t-G~~~~i~~i~~l~~~~~~~~~~~~~~ 240 (508)
++.+ |+++++ ++ .+++++|++++++|++ |.++|.+++.++++ +|+
T Consensus 123 -~~~~---------------d~~~l~--~~-------~~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~---------~~~ 168 (359)
T 3pj0_A 123 -NQLL---------------TIDDIK--SL-------REPVSSVLIELPQREIGGQLPAFEELEKISE---------YCH 168 (359)
T ss_dssp -TSCC---------------CHHHHH--TC-------SSCCSEEEEESSBGGGTSBCCCHHHHHHHHH---------HHH
T ss_pred -CCCc---------------CHHHHH--hc-------cCCceEEEEEecccCCCcccCCHHHHHHHHH---------HHH
Confidence 3444 688898 33 4678999999999988 79999888844444 333
Q ss_pred CCCeEEEEeccccCCC------CCCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhcccc--ccCceEEecccc
Q 010538 241 KGRWMVLIDAAKGCVT------QPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTY--FSGGTVAASIAD 312 (508)
Q Consensus 241 ~~g~~vivD~a~~~g~------~~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~--~g~~~~~~~~~~ 312 (508)
++|+++|+|+++..+. .+.++. .++|+++.|+||++++|.| |+++.++++++.+.... .++.
T Consensus 169 ~~~~~li~D~a~~~~~~~~~~~~~~~~~-~~~d~~~~s~sK~~~~~~g-g~~~~~~~l~~~~~~~~~~~~~~-------- 238 (359)
T 3pj0_A 169 EQGISLHLDGARLWEITPFYQKSAEEIC-ALFDSVYVSFYKGIGGIAG-AILAGNDDFVQEAKIWKRRYGGD-------- 238 (359)
T ss_dssp HHTCEEEEEETTCGGGHHHHTCCHHHHH-TTCSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHHHTTCC--------
T ss_pred HcCCEEEEECcchhcchhhhCCCHHHhh-ccCCEEEEeccccCCCcce-EEEECCHHHHHHHHHHHHHhCCC--------
Confidence 4999999999876433 111121 2579999999998887866 88888988877665421 1110
Q ss_pred hhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEec-CCCCCc
Q 010538 313 IDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYG-TYTSEV 391 (508)
Q Consensus 313 ~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~-~~~~~~ 391 (508)
..+.+....+++ .+++.. . +..++..++++++.+.|+++ +++++.. +..
T Consensus 239 ---------------~~~~~~~~~a~~-~~l~~~----~-~~~~~~~~~~~~l~~~L~~~------~g~~~~~~~~~--- 288 (359)
T 3pj0_A 239 ---------------LISLYPYILSAD-YYFEKR----I-GKMAEYFEAAKGLAERFNSC------SGVKTVPEVPV--- 288 (359)
T ss_dssp ---------------CSCCHHHHHHHH-HHHHHH----G-GGHHHHHHHHHHHHHHHHTS------TTEEEESSSCS---
T ss_pred ---------------cchhHHHHHHHH-HHHHHH----H-HHhHHHHHHHHHHHHHHhhC------CCceeeccCCc---
Confidence 011112222222 233322 2 33345678889999999987 4788753 332
Q ss_pred ccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCC
Q 010538 392 SYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKP 471 (508)
Q Consensus 392 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 471 (508)
++++++.++.... .+...+.+.|.++||.+++|..+..+ .
T Consensus 289 -----~~~~~~~~~~~~~--~~~~~l~~~l~~~GV~v~~g~~~~~~---------------------------------~ 328 (359)
T 3pj0_A 289 -----SNMFHVYFENSAD--EIGAILTKIQDETGVGISGYLQEKSA---------------------------------D 328 (359)
T ss_dssp -----SSEEEEEESSCHH--HHHHHHHHHHHHHCEECCSCCEEEET---------------------------------T
T ss_pred -----ceEEEEEecCccc--hhHHHHHHHHHhcCcEecCCccccCC---------------------------------C
Confidence 7888888864311 12345888999999999998543221 2
Q ss_pred CceEEEecCC---CCCHHHHHHHHHhhhhh
Q 010538 472 TGAIRVSFGY---MSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 472 ~~~iRis~~~---~~t~eev~~l~~~~~~~ 498 (508)
.+++|++++. ..+.++++..++.|.+.
T Consensus 329 ~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 329 VCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp EEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 5789998863 35788888888887653
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.1e-23 Score=213.83 Aligned_cols=329 Identities=15% Similarity=0.056 Sum_probs=206.8
Q ss_pred eCCCCCCCCHHHHHHHHH-HhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCC------CCCCceEEEcCChHHHHH
Q 010538 45 DHAGATLYSELQMEAIFR-DFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA------SMKDYKCIFTSGATAALK 117 (508)
Q Consensus 45 d~~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~------~~~~~~i~~t~g~t~al~ 117 (508)
|..+.+++++.+.+++.+ ... .. . ...|... ....++|+.++++++. +++..+|++|+|+|+|++
T Consensus 38 d~~~~~~~~~~v~~a~~~~~~~-~~-~--~~~y~~~----~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~ 109 (397)
T 3fsl_A 38 NEDGIIPQLQAVAEAEARLNAQ-PH-G--ASLYLPM----EGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALK 109 (397)
T ss_dssp CTTSCCCCCHHHHHHHHHHHHS-CC-C--CCCCCCT----TCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHH
T ss_pred CCCCCccCcHHHHHHHHhhccC-cc-c--cccCCCC----CchHHHHHHHHHHHhcCCcccccccceEEEEcCCcHHHHH
Confidence 444566666888888765 442 10 0 1112111 1135567777777754 333114899999999999
Q ss_pred HHHh--hcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccC--CccCccccccccccccccccchhhhhcCCCCC
Q 010538 118 LVGE--AFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVE--EAVDNDGLSESLVTSTKISLLPIQRRKGASFP 193 (508)
Q Consensus 118 ~~~~--~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~--~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~ 193 (508)
+++. ++ ..+|++|+++...|+++. ..++..|.+++.+|.. ++..+ |+++++ ++++
T Consensus 110 ~~~~~~~~-~~~gd~vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~---------------d~~~l~--~~l~ 168 (397)
T 3fsl_A 110 VGADFLKR-YFPESGVWVSDPTWENHV---AIFAGAGFEVSTYPWYDEATNGV---------------RFNDLL--ATLK 168 (397)
T ss_dssp HHHHHHHH-HCTTCCEEEESSCCHHHH---HHHHHTTCCEEEECCEETTTTEE---------------CHHHHH--HHHT
T ss_pred HHHHHHHh-cCCCCeEEEeCCCchhHH---HHHHHcCCceEEEeeeeccCCcC---------------cHHHHH--HHHH
Confidence 9853 44 578899998886666554 4455679999999983 23333 577887 6664
Q ss_pred CCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCC-----CC----CCC
Q 010538 194 ERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPP-----DL----SKY 264 (508)
Q Consensus 194 ~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~-----d~----~~~ 264 (508)
+ ..++++++++++++||||.+++.+++.++++ +|+++|+++|+|++++...... .+ ...
T Consensus 169 ~---~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~---------~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 236 (397)
T 3fsl_A 169 T---LQAGSIVLLHPCCHNPTGADLTNDQWDAVIE---------ILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAG 236 (397)
T ss_dssp T---CCTTCEEEECSSSCTTTCCCCCHHHHHHHHH---------HHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTT
T ss_pred h---CCCCCEEEEeCCCCCCCCcCCCHHHHHHHHH---------HHHhCCEEEEEecCchhhccCcccccHHHHHHHhcC
Confidence 2 1367899999999999999999885555554 3445999999999987544321 11 122
Q ss_pred CCcEEEEeccccccCCCc--ceEEEEe---chhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHH
Q 010538 265 PVDFVVMSFYKIFGYPTG--LGALIMR---NDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASI 339 (508)
Q Consensus 265 ~~D~~~~S~~K~~g~P~G--~G~l~~~---~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l 339 (508)
+..+++.|++|.+| ++| +|++++. ++.++.+...... ..+...++++.....++
T Consensus 237 ~~~i~~~S~SK~~~-~~G~riG~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~ 295 (397)
T 3fsl_A 237 LPALVSNSFSKIFS-LYGERVGGLSVMCEDAEAAGRVLGQLKA--------------------TVRRNYSSPPNFGAQVV 295 (397)
T ss_dssp CCEEEEEECTTTTT-CGGGCCEEEEEECSSHHHHHHHHHHHHH--------------------HHHTTTSSCCSHHHHHH
T ss_pred CCEEEEeccccccc-CcCCCeeEEEEecCCHHHHHHHHHHHHH--------------------HHHhccCCCCHHHHHHH
Confidence 45688999999999 767 7998863 3333322211000 00011123333334444
Q ss_pred HHHHHHH-----HhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCH
Q 010538 340 RHGFNLI-----NSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGY 414 (508)
Q Consensus 340 ~~al~~~-----~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 414 (508)
..++... ....+++++++++++++++.+.|+++.. ..++++..+.. +.++++.++ .
T Consensus 296 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~--------~~~~~~~~~--------~ 356 (397)
T 3fsl_A 296 AAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMP---ERNFDYLLNQR--------GMFSYTGLS--------A 356 (397)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT---TSCCTHHHHCC--------SSEEECCCC--------H
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCceeecCCc--------eEEEecCCC--------H
Confidence 3333311 0223678889999999999999988631 00354444432 455554432 2
Q ss_pred HHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHh
Q 010538 415 REVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCS 494 (508)
Q Consensus 415 ~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~ 494 (508)
..+.+.|.++||.+++| + |+|++..+ .++|+++++.
T Consensus 357 ~~~~~~l~~~gi~v~~g-----------------------------------------~--Ris~~~~~-~~~i~~~~~~ 392 (397)
T 3fsl_A 357 AQVDRLREEFGVYLIAS-----------------------------------------G--RMCVAGLN-TANVQRVAKA 392 (397)
T ss_dssp HHHHHHHHTTCEECCTT-----------------------------------------C--EEEGGGCC-TTTHHHHHHH
T ss_pred HHHHHHHHhCCEEECCC-----------------------------------------C--eEEEEecC-HhhHHHHHHH
Confidence 34778888999998763 2 99997554 4679999999
Q ss_pred hhhh
Q 010538 495 SFDF 498 (508)
Q Consensus 495 ~~~~ 498 (508)
|++.
T Consensus 393 l~~~ 396 (397)
T 3fsl_A 393 FAAV 396 (397)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8765
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-21 Score=201.97 Aligned_cols=331 Identities=13% Similarity=0.079 Sum_probs=219.5
Q ss_pred CCCeeeeCCCCCC------CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGATL------YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..++.+ .+|.+.+++.+.. ......+ ..+ ......+++++++++++.+ ++++|+|+
T Consensus 37 ~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~-~~~~~~~-~~~-----~~~~~~~l~~~la~~~~~~----~v~~~~gg 105 (406)
T 4adb_A 37 QGKEYIDFAGGIAVNALGHAHPELREALNEQA-SKFWHTG-NGY-----TNEPVLRLAKKLIDATFAD----RVFFCNSG 105 (406)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHH-TTCSCCC-TTS-----CCHHHHHHHHHHHHHSSCS----EEEEESSH
T ss_pred CCCEEEECCCchhhcccCCCCHHHHHHHHHHH-Hhccccc-CCc-----CCHHHHHHHHHHHhhCCCC----eEEEeCcH
Confidence 5677999876522 3788888876644 3222111 111 1345678899999999754 69999999
Q ss_pred HHHHHHHHhhcCC-------CCCCeEEEecccccch-HHHHHHHHhc---------CCeEEEEccCCccCcccccccccc
Q 010538 113 TAALKLVGEAFPW-------SHQSSYMYTMENHNSV-LGIREYALSQ---------GAAAFAIDVEEAVDNDGLSESLVT 175 (508)
Q Consensus 113 t~al~~~~~~l~~-------~~g~~vl~~~~~h~s~-~~~~~~~~~~---------G~~v~~v~~~~~~~~~~l~~~~~~ 175 (508)
|+|+.+++.++.. .+++.|++....|+.+ ..+....... +..+..+|.
T Consensus 106 ~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 170 (406)
T 4adb_A 106 AEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY--------------- 170 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT---------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC---------------
Confidence 9999999988732 3337777776555554 3333221000 012222322
Q ss_pred ccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCcccc--C---HHHHHHHHcCCccccccCCCCCCCeEEEEec
Q 010538 176 STKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRF--N---LDLINIMKKNPERILEISPFSKGRWMVLIDA 250 (508)
Q Consensus 176 ~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~--~---i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~ 250 (508)
.|+++++ +++ .+++++|+++ ++|++|.++ + +++|.++|++ +|+++|+|+
T Consensus 171 -----~d~~~l~--~~l------~~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~------------~~~~li~De 224 (406)
T 4adb_A 171 -----NDINSAS--ALI------DDSTCAVIVE-PIQGEGGVVPASNAFLQGLRELCNR------------HNALLIFDE 224 (406)
T ss_dssp -----TCHHHHH--TTC------STTEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHH------------TTCEEEEEC
T ss_pred -----CcHHHHH--HHh------cCCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHH------------cCCEEEEec
Confidence 1578888 555 4678999999 789999877 4 5566666665 999999999
Q ss_pred ccc-CCCCC--C--CCCCCCCcEEEEeccccccCCC-cceEEEEechhHhhhccccccCceEEecccchhhhhhccCccc
Q 010538 251 AKG-CVTQP--P--DLSKYPVDFVVMSFYKIFGYPT-GLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEE 324 (508)
Q Consensus 251 a~~-~g~~~--~--d~~~~~~D~~~~S~~K~~g~P~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 324 (508)
+|+ ++... + +......|++ ++||+++ |+ .+|++++++++++.+.+...+.
T Consensus 225 ~~~~~~~~g~~~~~~~~~~~~d~~--t~sK~~~-~G~r~G~~~~~~~~~~~~~~~~~~~--------------------- 280 (406)
T 4adb_A 225 VQTGVGRTGELYAYMHYGVTPDLL--TTAKALG-GGFPVGALLATEECARVMTVGTHGT--------------------- 280 (406)
T ss_dssp TTTTTTTTSSSSHHHHHTCCCSEE--EECGGGG-TTSCCEEEEECHHHHHTCCTTSSCC---------------------
T ss_pred cccCCCccchhHHHHhcCCCCCEE--Eechhhc-CCCCeEEEEEcHHHHhhhccCCcCC---------------------
Confidence 996 32221 1 1112346777 4589998 52 2899999999887766542111
Q ss_pred cccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEe
Q 010538 325 LFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNL 404 (508)
Q Consensus 325 ~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 404 (508)
..+.+....+++.++++.+.. +++.++++++++++.+.|+++.. .+.++.... ..+.++++.+
T Consensus 281 ---~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~~~~~------~~g~~~~~~~ 343 (406)
T 4adb_A 281 ---TYGGNPLASAVAGKVLELINT---PEMLNGVKQRHDWFVERLNTINH-----RYGLFSEVR------GLGLLIGCVL 343 (406)
T ss_dssp ---SSTTCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHH-----HHCCEEEEE------EETTEEEEEE
T ss_pred ---CCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHH-----hCCCceEEE------EEEEEEEEEE
Confidence 123455666666777776533 78889999999999999987521 111111110 1268889988
Q ss_pred eCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCC
Q 010538 405 KRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMST 484 (508)
Q Consensus 405 ~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t 484 (508)
++... .+..++.+.|.++||.++++. .+++|+++++.+|
T Consensus 344 ~~~~~--~~~~~~~~~l~~~gi~v~~~~---------------------------------------~~~iRi~~~~~~~ 382 (406)
T 4adb_A 344 NADYA--GQAKQISQEAAKAGVMVLIAG---------------------------------------GNVVRFAPALNVS 382 (406)
T ss_dssp CTTTT--TCHHHHHHHHHHTTEECEESS---------------------------------------TTEEEECCCTTCC
T ss_pred eCCcH--HHHHHHHHHHHHCCcEEeecC---------------------------------------CCeEEEECCCCCC
Confidence 75321 134568888988999988742 5789999999999
Q ss_pred HHHHHHHHHhhhhhhhhhh
Q 010538 485 FEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 485 ~eev~~l~~~~~~~~~~~~ 503 (508)
.+|++++++.|+++++.++
T Consensus 383 ~e~i~~~~~~l~~~l~~~~ 401 (406)
T 4adb_A 383 EEEVTTGLDRFAAACEHFV 401 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887654
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=9.6e-24 Score=219.13 Aligned_cols=329 Identities=12% Similarity=0.012 Sum_probs=211.2
Q ss_pred eeeCCCCCCCCHHHHHHHHH-HhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC------CCCCCceEEE--cCChH
Q 010538 43 YLDHAGATLYSELQMEAIFR-DFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN------ASMKDYKCIF--TSGAT 113 (508)
Q Consensus 43 yld~~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------~~~~~~~i~~--t~g~t 113 (508)
|+|+++.+++++.+.+++.+ .+ .. .. ...|.. .....++|+.++++++ ++++ +|++ |+|++
T Consensus 39 ~~d~~~~~~~~~~v~~a~~~~~~-~~--~~-~~~y~~----~~g~~~lr~~ia~~~~~~~~~~~~~~--~i~~~~t~g~~ 108 (412)
T 1yaa_A 39 YRDDNGKPWVLPSVKAAEKLIHN-DS--SY-NHEYLG----ITGLPSLTSNAAKIIFGTQSDALQED--RVISVQSLSGT 108 (412)
T ss_dssp CBCTTSCBCCCHHHHHHHHHHHT-CT--TC-CCCCCC----TTCCHHHHHHHHHHHHCTTCHHHHTT--CEEEEEEEHHH
T ss_pred eeCCCCCCCCcHHHHHHHHhhhc-Cc--cc-ccCCCC----CCCcHHHHHHHHHHHhcCCCCCCCcc--eEEEEeccchH
Confidence 33444445677888777654 33 21 00 111211 1124567788888773 2566 7999 99999
Q ss_pred HHHHHHH--hhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEcc-CC-ccCccccccccccccccccchhhhhcC
Q 010538 114 AALKLVG--EAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDV-EE-AVDNDGLSESLVTSTKISLLPIQRRKG 189 (508)
Q Consensus 114 ~al~~~~--~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~-~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~ 189 (508)
+|+++++ ..+ +.+|++|+++...|+++.. .++..|.+++.+|. +. +..+ |+++++
T Consensus 109 ~a~~~~~~~~~~-~~~gd~Vl~~~p~~~~~~~---~~~~~g~~~~~v~~~~~~~~~~---------------d~~~l~-- 167 (412)
T 1yaa_A 109 GALHISAKFFSK-FFPDKLVYLSKPTWANHMA---IFENQGLKTATYPYWANETKSL---------------DLNGFL-- 167 (412)
T ss_dssp HHHHHHHHHHHH-HCTTCCEEEEESCCTTHHH---HHHTTTCCEEEEECEETTTTEE---------------CHHHHH--
T ss_pred hHHHHHHHHHHH-hCCCCEEEEeCCCCccHHH---HHHHcCceEEEEeeecCCCCcc---------------CHHHHH--
Confidence 9999873 222 3578999999877777654 44556999999998 32 2333 577777
Q ss_pred CCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCC-CC-------CC-C
Q 010538 190 ASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCV-TQ-------PP-D 260 (508)
Q Consensus 190 ~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g-~~-------~~-d 260 (508)
+++++. .+.+.++++++++||||.++|.+++.++++ +|+++|+++|+|++|+.. .. ++ +
T Consensus 168 ~~l~~~---~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~---------~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 235 (412)
T 1yaa_A 168 NAIQKA---PEGSIFVLHSCAHNPTGLDPTSEQWVQIVD---------AIASKNHIALFDTAYQGFATGDLDKDAYAVRL 235 (412)
T ss_dssp HHHHHS---CTTCEEEEECSSCTTTCCCCCHHHHHHHHH---------HHHHTTCEEEEEESCTTTSSSCHHHHTHHHHH
T ss_pred HHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHH---------HHHHCCCEEEEecccccccCCcccchhHHHHH
Confidence 555321 123567777999999999999776655554 344599999999998532 11 11 2
Q ss_pred CCCCC----CcEEEEeccccccCCCc--ceEEE--E-----ech----hHhhhccccccCceEEecccchhhhhhccCcc
Q 010538 261 LSKYP----VDFVVMSFYKIFGYPTG--LGALI--M-----RND----AAKLLKNTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 261 ~~~~~----~D~~~~S~~K~~g~P~G--~G~l~--~-----~~~----~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
+...+ .++++.|+||.+| |+| +|+++ . +++ +++.+...
T Consensus 236 ~~~~~~~~~~~i~~~s~sK~~~-~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~------------------------ 290 (412)
T 1yaa_A 236 GVEKLSTVSPVFVCQSFAKNAG-MYGERVGCFHLALTKQAQNKTIKPAVTSQLAKI------------------------ 290 (412)
T ss_dssp HHHHTTTTCCEEEEEECTTTSC-CGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHH------------------------
T ss_pred HHhcCCCCcceEEEeccCCCCC-CcCCcceEEEEEecCCCCCHHHHHHHHHHHHHH------------------------
Confidence 22122 4688999999999 878 69998 6 444 44333321
Q ss_pred ccccCCCCChhHHHHHHHHHHHHH-----hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCc
Q 010538 324 ELFEDGTASFLSIASIRHGFNLIN-----SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGS 398 (508)
Q Consensus 324 ~~~~~gt~~~~~~~~l~~al~~~~-----~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (508)
.+...++++.....++.++++... +.++++++++++++++++.+.|+++.. ..+++++.+.. +.
T Consensus 291 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~--------~~ 359 (412)
T 1yaa_A 291 IRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGT---PGNWDHIVNQC--------GM 359 (412)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---SSCCTHHHHCC--------SS
T ss_pred HhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---CCCeeeeccCc--------eE
Confidence 011123445555666666665431 124788899999999999999988620 00255544432 34
Q ss_pred eEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEe
Q 010538 399 MVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVS 478 (508)
Q Consensus 399 ~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis 478 (508)
++++.+ +...+.+.+.++||.+++ .+|||
T Consensus 360 ~~~~~~--------~~~~~~~~l~~~gi~v~~-------------------------------------------~~Ris 388 (412)
T 1yaa_A 360 FSFTGL--------TPQMVKRLEETHAVYLVA-------------------------------------------SGRAS 388 (412)
T ss_dssp EEECCC--------CHHHHHHHHHHHCEECCT-------------------------------------------TSEEE
T ss_pred EEeeCC--------CHHHHHHHHHhCCEEecc-------------------------------------------CcEEE
Confidence 444322 223476777788999753 37999
Q ss_pred cCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 479 FGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 479 ~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
++. .|.+++++++++|+++++++
T Consensus 389 ~~~-~~~~~i~~~~~~l~~~~~~~ 411 (412)
T 1yaa_A 389 IAG-LNQGNVEYVAKAIDEVVRFY 411 (412)
T ss_dssp GGG-CCTTTHHHHHHHHHHHHHHC
T ss_pred Ecc-CCHhHHHHHHHHHHHHHHhh
Confidence 985 59999999999999988764
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6e-23 Score=213.99 Aligned_cols=332 Identities=13% Similarity=-0.005 Sum_probs=207.9
Q ss_pred eeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCC------CCCCceEEEcCChHHHH
Q 010538 43 YLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA------SMKDYKCIFTSGATAAL 116 (508)
Q Consensus 43 yld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~------~~~~~~i~~t~g~t~al 116 (508)
|+|..+.+++++.+.+++.+.+... ....|.... ...++|+.++++++. +++..+|++|+|+|+|+
T Consensus 59 y~d~~~~~~~~~~v~~a~~~~~~~~----~~~~Y~~~~----g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al 130 (420)
T 4f4e_A 59 YTNEDGKIPLLRAVRDAEKARVEAG----LPRGYLPID----GIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGAL 130 (420)
T ss_dssp CCCTTSCCCCCHHHHHHHHHHHHTC----CCCCCCCTT----CCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHH
T ss_pred eECCCCCccCcHHHHHHHHHHhccC----CCCCCCCCC----CcHHHHHHHHHHhcCCCccccccCceEEEECCccHHHH
Confidence 3344456666688888876544220 111122111 134566777776643 23201589999999999
Q ss_pred HHHH--hhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccC--CccCccccccccccccccccchhhhhcCCCC
Q 010538 117 KLVG--EAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVE--EAVDNDGLSESLVTSTKISLLPIQRRKGASF 192 (508)
Q Consensus 117 ~~~~--~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~--~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l 192 (508)
.+++ .++ ..+|++|+++...|+++. ..++..|.+++.+|.. .+..+ |+++++ +++
T Consensus 131 ~~~~~~~~~-~~~gd~Vlv~~p~~~~~~---~~~~~~g~~~~~v~~~~~~~~~~---------------d~~~l~--~~l 189 (420)
T 4f4e_A 131 KIGADFLRT-LNPKAKVAISDPSWENHR---ALFDMAGFEVVAYPYYDAKTNGV---------------NFDGML--AAL 189 (420)
T ss_dssp HHHHHHHHH-HCTTCCEEEEESCCHHHH---HHHHHTTCCEEEEECEETTTTEE---------------CHHHHH--HHH
T ss_pred HHHHHHHHH-hCCCCEEEEeCCCcHhHH---HHHHHcCCeEEEeeeeccccCcc---------------CHHHHH--HHH
Confidence 9984 444 578899998886666654 4455579999999983 23333 577777 665
Q ss_pred CCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCC-----CC----CC
Q 010538 193 PERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPP-----DL----SK 263 (508)
Q Consensus 193 ~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~-----d~----~~ 263 (508)
++ ..++++++++++++||||.+++.+++.++++ +|+++|+++|+|++++...... .+ ..
T Consensus 190 ~~---~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~---------~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~ 257 (420)
T 4f4e_A 190 NG---YEPGTIVVLHACCHNPTGVDLNDAQWAQVVE---------VVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAA 257 (420)
T ss_dssp TT---CCTTCEEEEECSSCTTTCCCCCHHHHHHHHH---------HHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHT
T ss_pred Hh---CCCCCEEEEeCCCCCCCCCCCCHHHHHHHHH---------HHHHCCcEEEEccccccccCCcchhhHHHHHHHhc
Confidence 32 1367899999999999999999886666655 4555999999999986533221 11 12
Q ss_pred CCCcEEEEeccccccCCCc--ceEEEE---echhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHH
Q 010538 264 YPVDFVVMSFYKIFGYPTG--LGALIM---RNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIAS 338 (508)
Q Consensus 264 ~~~D~~~~S~~K~~g~P~G--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~ 338 (508)
.+.++++.|++|.|| ++| +|++++ +++.++.+...... ..+....+++.....+
T Consensus 258 ~~~~i~~~S~SK~~~-~~G~RiG~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~ 316 (420)
T 4f4e_A 258 NLNVFVSSSFSKSFS-LYGERVGALSIITDSKDEAARVLSQLKR--------------------VIRTNYSNPPTHGGAI 316 (420)
T ss_dssp TCCEEEEEECTTTTT-CGGGCEEEEEEECSSHHHHHHHHHHHHH--------------------HHHTTTSSCCSHHHHH
T ss_pred CCCEEEEEeCCccCc-CcCCCcEEEEEEcCCHHHHHHHHHHHHH--------------------HHhcccCCCCHHHHHH
Confidence 356799999999999 768 899875 23433322111000 0001112233333333
Q ss_pred HHHHHHHHH-----hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccC
Q 010538 339 IRHGFNLIN-----SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFG 413 (508)
Q Consensus 339 l~~al~~~~-----~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 413 (508)
+..++.... +..++.++++++++++++.+.|+++.. .+++.+..+.. +.++++.+ +
T Consensus 317 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~--------g~~~~~~~--------~ 377 (420)
T 4f4e_A 317 VAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGI---ERDFSFINAQR--------GMFSYSGL--------T 377 (420)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---SSCCTHHHHSC--------SSEEECCC--------C
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCceeECCCc--------cEEEEeCC--------C
Confidence 333333210 123688889999999999999988621 01454444432 45555443 2
Q ss_pred HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHH
Q 010538 414 YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRC 493 (508)
Q Consensus 414 ~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~ 493 (508)
...+.+.+.++||.+.++ .|+|++.. |.++++++++
T Consensus 378 ~~~~~~~l~~~gI~v~~~-------------------------------------------~Ris~~~~-~~~~i~~~~~ 413 (420)
T 4f4e_A 378 SAQVDRLREEFGIYAVST-------------------------------------------GRICVAAL-NTRNLDVVAN 413 (420)
T ss_dssp HHHHHHHHHHHCEECCTT-------------------------------------------SEEEGGGC-CTTTHHHHHH
T ss_pred HHHHHHHHHhCCEEecCC-------------------------------------------CeEEEecC-CHHHHHHHHH
Confidence 234778888999998652 29999754 5566999999
Q ss_pred hhhhhh
Q 010538 494 SSFDFV 499 (508)
Q Consensus 494 ~~~~~~ 499 (508)
+|++++
T Consensus 414 ~l~~~l 419 (420)
T 4f4e_A 414 AIAAVL 419 (420)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998765
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-21 Score=204.94 Aligned_cols=335 Identities=10% Similarity=-0.022 Sum_probs=201.5
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEEccC
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDVE 161 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~~ 161 (508)
....+++++++|+++|.+. .++++++++|+.+++.++ .++|++|+++...|+++..... .++..|++++.++.+
T Consensus 81 ~p~~~~le~~lA~l~g~~~----~v~~~sG~~Ai~~al~al-~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~ 155 (430)
T 3ri6_A 81 NPTVEDLEQRLKNLTGALG----VLALGSGMAAISTAILTL-ARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM 155 (430)
T ss_dssp CHHHHHHHHHHHHHHTCSE----EEEESCHHHHHHHHHHHH-CCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT
T ss_pred CHHHHHHHHHHHHHHCCCc----EEEECCHHHHHHHHHHHH-hCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC
Confidence 4567889999999999853 355556679999999988 7889999999999988776544 667789999999875
Q ss_pred CccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCC
Q 010538 162 EAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK 241 (508)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~ 241 (508)
|+++++ +++ +++|++|++++++||+|.+.|+++|.++|++
T Consensus 156 --------------------d~~~l~--~ai------~~~t~~v~~e~p~NptG~~~dl~~i~~la~~------------ 195 (430)
T 3ri6_A 156 --------------------DSLAVE--HAC------DETTKLLFLETISNPQLQVADLEALSKVVHA------------ 195 (430)
T ss_dssp --------------------CHHHHH--HHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHT------------
T ss_pred --------------------CHHHHH--Hhh------CCCCeEEEEECCCCCCCeecCHHHHHHHHHH------------
Confidence 256667 444 4689999999999999999999999999998
Q ss_pred CCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCC-cceEEEE-echh-HhhhccccccCceEEecccchhhhhh
Q 010538 242 GRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPT-GLGALIM-RNDA-AKLLKNTYFSGGTVAASIADIDFVKR 318 (508)
Q Consensus 242 ~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~-G~G~l~~-~~~~-~~~l~~~~~g~~~~~~~~~~~~~~~~ 318 (508)
+|+++|+|++++.+.. .+....++|+++.|++|++++|. ++|.+++ +.+. ... ...+..-.. ......+...
T Consensus 196 ~g~~livD~a~~~~~~-~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~-~~~~~~l~~---~~g~~~~i~~ 270 (430)
T 3ri6_A 196 KGIPLVVDTTMTPPYL-LEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKS-LPSLAPYYA---KAGPMAFLYK 270 (430)
T ss_dssp TTCCEEEECTTSCTTT-CCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGG-STTTHHHHH---HHGGGHHHHH
T ss_pred cCCEEEEECCCccccc-CChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhh-ccchhhhhh---hhchhhHHHH
Confidence 9999999999998765 44556689999999999999542 1444444 3221 100 000000000 0000000000
Q ss_pred ccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEE-EecCCCCCcccC---
Q 010538 319 RQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCT-IYGTYTSEVSYH--- 394 (508)
Q Consensus 319 ~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~-~~~~~~~~~~~~--- 394 (508)
......+...++.+....+.+...++. +..+.++..+.++++.+.|++.+ .++ +..|.-. ..+.
T Consensus 271 ~~~~~~~~~g~~~~~~~a~l~l~~l~~-----l~~r~~~~~~na~~la~~L~~~p------~v~~V~~P~l~-~~p~~~~ 338 (430)
T 3ri6_A 271 ARKEVFQNLGPSLSPHNAYLQSLGLET-----MALRIERSCQNAQELAHWLLSIP------QVKCVNHPSLP-DSPFYAI 338 (430)
T ss_dssp HHHTHHHHHCCCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHTTCT------TCEEEECTTST-TSTTHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHhhhhh-----HHHHHHHHHHHHHHHHHHHhCCC------CccEEECCCCC-CCccHHH
Confidence 000001112233333333322334443 34555677888889999998874 565 4434311 0000
Q ss_pred -----CCCc-eEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccC
Q 010538 395 -----DTGS-MVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIH 468 (508)
Q Consensus 395 -----~~~~-~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 468 (508)
..++ +++|.+++. .....+.+.|+..++.++.|..++.-.. +.+.....+. .+...-.
T Consensus 339 ~~~~~g~Gg~~lsf~l~~~----~~~~~~~~~l~~~~~~~s~G~~~sli~~------p~~~~h~~~~------~~~~~~~ 402 (430)
T 3ri6_A 339 AKRQFRYAGSILTFELESK----EASYRFMDALKLIRRATNIHDNKSLILS------PYHVIYALNS------HEERLKL 402 (430)
T ss_dssp HHHHCSSCCSEEEEECSSH----HHHHHHHHHCSSSEECSCCSCSSCEEEC------TGGGC---------------CGG
T ss_pred HHHhCCCCceEEEEEECCH----HHHHHHHHhCCcceecCCCCCCCceeeC------CcccccccCC------HHHHHhc
Confidence 0155 999999732 1123455556556677777765542100 0000001010 0000011
Q ss_pred CCCCceEEEecCCCCCHHHHHHHHHhh
Q 010538 469 GKPTGAIRVSFGYMSTFEDAKVNRCSS 495 (508)
Q Consensus 469 ~~~~~~iRis~~~~~t~eev~~l~~~~ 495 (508)
+..++.||+|++.-+.++-++.+.++|
T Consensus 403 g~~~~liRlsvG~E~~~dl~~dl~~al 429 (430)
T 3ri6_A 403 EISPAMMRLSVGIEEIEDLKEDILQAL 429 (430)
T ss_dssp GSCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeccCCHHHHHHHHHHhh
Confidence 234789999999866555555554443
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-23 Score=220.98 Aligned_cols=363 Identities=13% Similarity=0.028 Sum_probs=212.5
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKL 118 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~ 118 (508)
.+..|+|+.+..++ +.+.+++.+.+.. + ...|.. .....+++++++++++. + +++||+|+|+|+++
T Consensus 39 ~~~~ylD~~~~~~~-~~v~~a~~~~l~~---~--~~~y~~----~~~~~~l~~~la~~~~~--~--~v~~t~~gt~A~~~ 104 (467)
T 2oqx_A 39 SEDVFIDLLTDSGT-GAVTQSMQAAMMR---G--DEAYSG----SRSYYALAESVKNIFGY--Q--YTIPTHQGRGAEQI 104 (467)
T ss_dssp GGGCSEECSCCSSC-SCCCHHHHHHTTS---C--CCCSSS----CHHHHHHHHHHHHHHCC--S--EEEEEC--CCSHHH
T ss_pred CCCeeEecccCCCc-HHHHHHHHHHhcc---C--cceecc----CchhHHHHHHHHHHhCc--C--cEEEcCCcHHHHHH
Confidence 56789999877765 6677776554321 1 111211 22356788999999987 4 79999999999999
Q ss_pred HHhhcCCCC-----C----CeEEEecccc-cchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhc
Q 010538 119 VGEAFPWSH-----Q----SSYMYTMENH-NSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRK 188 (508)
Q Consensus 119 ~~~~l~~~~-----g----~~vl~~~~~h-~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~ 188 (508)
++.++ ..+ | ++|++.. .| +++.... ...|..+...+.......+. .....-..|+++++
T Consensus 105 al~~~-~~~~~~~~G~~~~d~Ii~~~-~h~~t~~~~~---~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~d~~~Le- 173 (467)
T 2oqx_A 105 YIPVL-IKKREQEKGLDRSKMVAFSN-YFFDTTQGHS---QINGCTVRNVYIKEAFDTGV-----RYDFKGNFDLEGLE- 173 (467)
T ss_dssp HHHHH-HHHHHHHHCCCTTTCEEEES-SCCHHHHHHH---HHTTCEEEECBCTTTTCTTS-----CCTTTTCBCHHHHH-
T ss_pred HHHHH-hccccccCCCCccceEEecc-cccccchhhh---hccCcceeeccccccccCCC-----CCCccCCcCHHHHH-
Confidence 99887 344 6 7777764 44 3333332 23466655432110000000 00000112678888
Q ss_pred CCCCCCCCCCCCCceEEEEeCCCCCC-ccccCHH---HHHHHHcCCccccccCCCCCCCeEEEEeccccC----------
Q 010538 189 GASFPERDPAGDAYNLFAFPSECNFS-GSRFNLD---LINIMKKNPERILEISPFSKGRWMVLIDAAKGC---------- 254 (508)
Q Consensus 189 ~~~l~~~~~~~~~t~lv~~~~~~n~t-G~~~~i~---~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~---------- 254 (508)
+++.+.. .++|++|++++++|++ |.++|.+ +|.++|++ ||+++|+|++|+.
T Consensus 174 -~~i~~~~--~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~------------~gi~li~D~a~~~e~~~~~~~~~ 238 (467)
T 2oqx_A 174 -RGIEEVG--PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKK------------YDIPVVMDSARFAENAYFIKQRE 238 (467)
T ss_dssp -HHHHHHC--GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHH------------TTCCEEEECTTHHHHHHHHHHHC
T ss_pred -HHHHhcC--CCceeEEEEeccccCCCCccCCHHHHHHHHHHHHH------------cCCEEEEEchhhhhhhhhccccc
Confidence 5553110 1478999999999998 8888765 55555555 9999999988765
Q ss_pred -CCCCCCCCC------CCCcEEEEeccccccCCCcceEEEEech-hHh---hhcccc-ccCceEEecccchhhhhhccCc
Q 010538 255 -VTQPPDLSK------YPVDFVVMSFYKIFGYPTGLGALIMRND-AAK---LLKNTY-FSGGTVAASIADIDFVKRRQGV 322 (508)
Q Consensus 255 -g~~~~d~~~------~~~D~~~~S~~K~~g~P~G~G~l~~~~~-~~~---~l~~~~-~g~~~~~~~~~~~~~~~~~~~~ 322 (508)
+....+... ..+|++++|+||++|.|.| |+++.+++ +++ .+++.. .+++.
T Consensus 239 ~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 300 (467)
T 2oqx_A 239 AEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCMKDDSFFDVYTECRTLCVVQEGF----------------- 300 (467)
T ss_dssp GGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSC-EEEEECSGGGHHHHHHHHHHHHHTTSS-----------------
T ss_pred ccccCccHHHHhhhhhccCCeEEEecccccCCCCc-eEEEecChhHHHHHHHHHHhhhccCCc-----------------
Confidence 333333322 2378889999999985645 77777766 333 333321 11110
Q ss_pred cccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEE
Q 010538 323 EELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSF 402 (508)
Q Consensus 323 ~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 402 (508)
...++.+...++++..+++.. . -+...++..++++++.+.|+++ ++.+. +.. +.++++
T Consensus 301 ---~~~~~~~~~~~~al~~~l~~~--~-~~~~~~~~~~~~~~l~~~L~~~-------~~~~~-~~~--------~~~~~~ 358 (467)
T 2oqx_A 301 ---PTYGGLEGGAMERLAVGLYDG--M-NLDWLAYRIAQVQYLVDGLEEI-------GVVCQ-QAG--------GHAAFV 358 (467)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHT--T-CHHHHHHHHHHHHHHHHHHHHT-------TCCEE-EEC--------SSCEEE
T ss_pred ---ccccchhhhHHHHHHHhhHhh--h-hHHHHHHHHHHHHHHHHHHHHC-------CCeee-cCC--------ceEEEE
Confidence 112344444444443332211 1 1234455678889999999876 35555 432 678888
Q ss_pred EeeC----CCCCccCHHHHHHHH-hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEE
Q 010538 403 NLKR----PDGSWFGYREVEKLA-SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRV 477 (508)
Q Consensus 403 ~~~~----~~~~~~~~~~l~~~L-~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRi 477 (508)
.+.. .+...++...+.+.| .++||.+.++..|..+. .++. |. ......+.+|+
T Consensus 359 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~-------~~~~-----g~----------~~~~~~~~iRl 416 (467)
T 2oqx_A 359 DAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGR-------DPKT-----GK----------QLPCPAELLRL 416 (467)
T ss_dssp EHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCB-------CTTT-----CS----------BCCCSCCEEEE
T ss_pred echhhcccCCcccccHHHHHHHHHHhcCceecccccccccc-------cccc-----cc----------cccCccCeEEE
Confidence 8742 222222123457777 88999998743221110 0000 00 00011478999
Q ss_pred ecCCC-CCHHHHHHHHHhhhhhhhhhh
Q 010538 478 SFGYM-STFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 478 s~~~~-~t~eev~~l~~~~~~~~~~~~ 503 (508)
+++.. +|.+|++++++.|+++++.++
T Consensus 417 ~~~~~~~t~e~i~~~~~~l~~~l~~~~ 443 (467)
T 2oqx_A 417 TIPRATYTQTHMDFIIEAFKHVKENAA 443 (467)
T ss_dssp CCCTTTSCHHHHHHHHHHHHHHHHSGG
T ss_pred EecCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 99999 999999999999998876554
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=213.86 Aligned_cols=334 Identities=13% Similarity=0.033 Sum_probs=210.8
Q ss_pred eeeeCCCCCCCCHHHHHHHHHHhhc-cccCCCCCccchhhhhhHHHHHHHHHHHHHc-CCC-----CCCceEEE--cCCh
Q 010538 42 VYLDHAGATLYSELQMEAIFRDFTT-NVYGNPHSQSDISLATCDIVRAAREQVLDYF-NAS-----MKDYKCIF--TSGA 112 (508)
Q Consensus 42 iyld~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~-~~~-----~~~~~i~~--t~g~ 112 (508)
+|+|+.+.+++.+.+.+++.+ +.. ....+.......+ ..++|+.+++++ |.+ ++ +|++ |+|+
T Consensus 58 ~~~d~~~~~~v~~av~~a~~~-~~~~~~~~~~~Y~~~~G------~~~lr~~ia~~l~g~~~~~~~~~--~i~~~~t~gg 128 (448)
T 3meb_A 58 AYRDESGKPWILPAVKEAEAI-ISSDLSKYNKEYPPVAG------FPLFLEAAQFLMFGKDSKAAQEG--RIASCQSLSG 128 (448)
T ss_dssp CCCCTTSCCCCCHHHHHHHHH-HHHCTTTTCCSCCCTTC------CHHHHHHHHHHHHCTTCHHHHTT--CEEEEEESHH
T ss_pred cccCCCCCEechHHHHHHHHH-HhhcccCCCCCCCCCcc------hHHHHHHHHHHhcCCCccccCcC--cEEEEECCcH
Confidence 467877778878877776432 321 1111111111112 466788888887 876 56 8999 9999
Q ss_pred HHHHHHH--HhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEEcc-CCc--cCccccccccccccccccchhhh
Q 010538 113 TAALKLV--GEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDV-EEA--VDNDGLSESLVTSTKISLLPIQR 186 (508)
Q Consensus 113 t~al~~~--~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~-~~~--~~~~~l~~~~~~~~~~~~d~~~l 186 (508)
|+|++++ +.++ ..+|++|+++...|+++....+ +++..|.+++.+|. +.+ ..+ |++++
T Consensus 129 t~al~l~~~~~~~-~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~---------------d~e~l 192 (448)
T 3meb_A 129 TGSLHIGFEFLHL-WMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEI---------------DFSNT 192 (448)
T ss_dssp HHHHHHHHHHHHH-HCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSB---------------CHHHH
T ss_pred HHHHHHHHHHHHH-hCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCc---------------CHHHH
Confidence 9999884 4444 4688999999988877765544 12257999999998 443 344 67788
Q ss_pred hcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC-CCCCCC-----
Q 010538 187 RKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC-VTQPPD----- 260 (508)
Q Consensus 187 ~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~-g~~~~d----- 260 (508)
+ +++++ ..++++++++++++||||.++|.+++.++++ +|+++|+++++|+++.. +..+.+
T Consensus 193 ~--~~l~~---~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~---------l~~~~~~~li~Deay~~~~~~~~~~~~~~ 258 (448)
T 3meb_A 193 K--KDIQS---APEKSIFLFHACAHNPSGIDFTEAQWKELLP---------IMKEKKHIAFFDSAYQGFATGSFEADAFA 258 (448)
T ss_dssp H--HHHHH---SCTTCEEEEESSSCTTTCCCCCHHHHHHHHH---------HHHHHTCEEEEEESCTTTSSSCHHHHTHH
T ss_pred H--HHHHh---CCCCcEEEEeCCCCCCCCcCCCHHHHHHHHH---------HHHHCCCEEEEecccccccCCCcccCchh
Confidence 7 55532 1246789999999999999999887555544 34459999999999763 322211
Q ss_pred C----CCCCCcEEEEeccccccCCCc--ceEE--EE--------ec-----hhHhhhccccccCceEEecccchhhhhhc
Q 010538 261 L----SKYPVDFVVMSFYKIFGYPTG--LGAL--IM--------RN-----DAAKLLKNTYFSGGTVAASIADIDFVKRR 319 (508)
Q Consensus 261 ~----~~~~~D~~~~S~~K~~g~P~G--~G~l--~~--------~~-----~~~~~l~~~~~g~~~~~~~~~~~~~~~~~ 319 (508)
+ ......+++.|+||.|| ++| +|++ ++ ++ ++++.+...
T Consensus 259 ~~~~~~~~~~~i~~~S~SK~~g-~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~-------------------- 317 (448)
T 3meb_A 259 VRMFVDAGVEVLVAQSFSKNFG-LYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQ-------------------- 317 (448)
T ss_dssp HHHHHHTTCCEEEEEECTTTSC-CGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHH--------------------
T ss_pred HHHHhhcCCcEEEEecccccCC-CccccceeeeeeeccccccccCCHHHHHHHHHHHHHH--------------------
Confidence 1 11123477999999999 667 7998 55 33 233222211
Q ss_pred cCccccccCCCCChhHHHHHHHHHHHHH-----hcChHHHHHHHHHHHHHHHHHHhcccCCCCCce------EEEecCCC
Q 010538 320 QGVEELFEDGTASFLSIASIRHGFNLIN-----SLTVPAICRHIASLGMYVRKVLLSLRHENGADV------CTIYGTYT 388 (508)
Q Consensus 320 ~~~~~~~~~gt~~~~~~~~l~~al~~~~-----~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~------~~~~~~~~ 388 (508)
.+....+++.....++..++.... ...++.+++++.++++++.+.|+++. .++ +....+..
T Consensus 318 ----~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~----~~~~~~~~~~~~~~~~~ 389 (448)
T 3meb_A 318 ----IRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRK----TPGPGSKGTWDHILTAI 389 (448)
T ss_dssp ----HHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----CCCSTTTCCCTHHHHCC
T ss_pred ----HhcccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----CCCcCcccccceeCCCc
Confidence 111122344444444444433110 01267888999999999999998761 122 33333322
Q ss_pred CCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccC
Q 010538 389 SEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIH 468 (508)
Q Consensus 389 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 468 (508)
+.+++..++ ...+..+++++||.+.+|.
T Consensus 390 --------g~~~~~~~~--------~~~~~~ll~~~gV~v~~G~------------------------------------ 417 (448)
T 3meb_A 390 --------GMFTFTGLT--------PEHVDYLKEKWSIYLVKAG------------------------------------ 417 (448)
T ss_dssp --------SSEEECCCC--------HHHHHHHHHHHCEEECSGG------------------------------------
T ss_pred --------eEEEecCCC--------HHHHHHHHHhCCEEEeCCC------------------------------------
Confidence 444443332 2235566688899997752
Q ss_pred CCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 469 GKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 469 ~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
.|||++..+ .++|++++++|+++++-+
T Consensus 418 ------gRis~a~~~-~~~i~~~~~~l~~~l~~~ 444 (448)
T 3meb_A 418 ------GRMSMCGLT-ESNCDYVAEAIHDAVTKL 444 (448)
T ss_dssp ------GEEEGGGCC-TTTHHHHHHHHHHHHHHS
T ss_pred ------cEEEEecCC-HHHHHHHHHHHHHHHHhc
Confidence 299997554 455999999999888743
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.89 E-value=4e-21 Score=198.26 Aligned_cols=328 Identities=11% Similarity=0.067 Sum_probs=216.5
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..++ +..+|.+++++.+... .... ....+ .....++++++++++++ ++ +++||+|+
T Consensus 34 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~~~-~~~~~-----~~~~~~~l~~~la~~~~--~~--~v~~~~gg 102 (395)
T 3nx3_A 34 KAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVD-KLLH-TSNLY-----YNENIAAAAKNLAKASA--LE--RVFFTNSG 102 (395)
T ss_dssp TCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHT-TCSC-CCTTS-----BCHHHHHHHHHHHHHHT--CS--EEEEESSH
T ss_pred CCCEEEECCCcHHhccCCCCCHHHHHHHHHHHH-hccc-ccccc-----CCHHHHHHHHHHHHhcC--CC--eEEEeCCH
Confidence 56779998665 2247888888766543 2111 11111 24567788899999998 45 89999999
Q ss_pred HHHHHHHHhhcCC------CCCCeEEEecccccchH-HHHHHH---------HhcCCeEEEEccCCccCccccccccccc
Q 010538 113 TAALKLVGEAFPW------SHQSSYMYTMENHNSVL-GIREYA---------LSQGAAAFAIDVEEAVDNDGLSESLVTS 176 (508)
Q Consensus 113 t~al~~~~~~l~~------~~g~~vl~~~~~h~s~~-~~~~~~---------~~~G~~v~~v~~~~~~~~~~l~~~~~~~ 176 (508)
++|+.+++.++.. .+++.|++....|.+.. ...... ...+..+..+|.+
T Consensus 103 ~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 167 (395)
T 3nx3_A 103 TESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYN--------------- 167 (395)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTT---------------
T ss_pred HHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCC---------------
Confidence 9999998877631 34677877766654433 222110 0112334444432
Q ss_pred cccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEeccc
Q 010538 177 TKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAK 252 (508)
Q Consensus 177 ~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~ 252 (508)
|+++++ +++ .+++++|++..++|++|.+.+ +++|.++|++ +|+++|+|++|
T Consensus 168 -----d~~~l~--~~l------~~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~------------~~~~li~Dev~ 222 (395)
T 3nx3_A 168 -----DISSVE--KLV------NEKTCAIILESVQGEGGINPANKDFYKALRKLCDE------------KDILLIADEIQ 222 (395)
T ss_dssp -----CHHHHH--TTC------CTTEEEEEEESEECTTSCEECCHHHHHHHHHHHHH------------HTCEEEEECTT
T ss_pred -----CHHHHH--Hhc------cCCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHH------------cCCEEEEEecc
Confidence 477888 555 467899999999999999988 8888888887 99999999998
Q ss_pred c-CCCCC--C--CCCCCCCcEEEEeccccccCCCcceEEEEechh-HhhhccccccCceEEecccchhhhhhccCccccc
Q 010538 253 G-CVTQP--P--DLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDA-AKLLKNTYFSGGTVAASIADIDFVKRRQGVEELF 326 (508)
Q Consensus 253 ~-~g~~~--~--d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 326 (508)
+ +|... . +......|+++ ++|.++++.++|+++++++. .+.+.+...+..
T Consensus 223 ~~~g~~g~~~~~~~~~~~~d~~t--~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~---------------------- 278 (395)
T 3nx3_A 223 CGMGRSGKFFAYEHAQILPDIMT--SAKALGCGLSVGAFVINQKVASNSLEAGDHGST---------------------- 278 (395)
T ss_dssp TTTTTTSSSSGGGGGTCCCSEEE--ECGGGTTTSCCEEEEECHHHHHHHSCTTCCSSC----------------------
T ss_pred cCCCcCCcchhHHhcCCCCCEEE--ecccccCCCceEEEEEchhhhhhhcCCcccCCC----------------------
Confidence 7 44322 1 11122456665 45988743358999999998 776665422211
Q ss_pred cCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeC
Q 010538 327 EDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKR 406 (508)
Q Consensus 327 ~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 406 (508)
.+.|....++..++++.+.+ +.+.++.+++.+++++.|.++.. ..+.+....+ .+.++++.+++
T Consensus 279 --~~~~~~~~~aa~aal~~~~~---~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~---------~g~~~~~~~~~ 342 (395)
T 3nx3_A 279 --YGGNPLVCAGVNAVFEIFKE---EKILENVNKLTPYLEQSLDELIN--EFDFCKKRKG---------LGFMQGLSLDK 342 (395)
T ss_dssp --BSCCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHH--HCTTEEEEEE---------ETTEEEEEECT
T ss_pred --CCCCHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHH--hCCCeEEEEe---------EEEEEEEEeCC
Confidence 12355566666677776644 34556666666666666654310 0022333221 16888888865
Q ss_pred CCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHH
Q 010538 407 PDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFE 486 (508)
Q Consensus 407 ~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~e 486 (508)
.. +...+.+.|.++||.++++. .+++|+++++..|.+
T Consensus 343 ~~----~~~~~~~~l~~~Gi~v~~~~---------------------------------------~~~iRi~~~~~~t~e 379 (395)
T 3nx3_A 343 SV----KVAKVIQKCQENALLLISCG---------------------------------------ENDLRFLPPLILQKE 379 (395)
T ss_dssp TS----CHHHHHHHHHHTTEECEEET---------------------------------------TTEEEECCCTTCCHH
T ss_pred cc----hHHHHHHHHHHCCCEEecCC---------------------------------------CCEEEEECCCCCCHH
Confidence 31 23468888999999988742 578999999999999
Q ss_pred HHHHHHHhhhhhhh
Q 010538 487 DAKVNRCSSFDFVN 500 (508)
Q Consensus 487 ev~~l~~~~~~~~~ 500 (508)
|+++++++|+++++
T Consensus 380 ~i~~~l~~l~~~l~ 393 (395)
T 3nx3_A 380 HIDEMSEKLRKALK 393 (395)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998765
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-22 Score=207.06 Aligned_cols=294 Identities=9% Similarity=0.013 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCC--eEEEecccccchHHHHHHHHhcCCeEEEEccCC
Q 010538 85 IVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQS--SYMYTMENHNSVLGIREYALSQGAAAFAIDVEE 162 (508)
Q Consensus 85 ~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~--~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~ 162 (508)
...++++++++++|.+. .++++|+++|+.+++.++. .+|+ +|++++..|++...........|++++.+|.+
T Consensus 48 ~~~~l~~~la~~~~~~~----~i~~~~G~~a~~~al~~~~-~~gd~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~- 121 (357)
T 3lws_A 48 IIEPFEQKFADVLGMDD----AVFFPSGTMAQQVALRIWS-DETDNRTVAYHPLCHLEIHEQDGLKELHPIETILVGAA- 121 (357)
T ss_dssp THHHHHHHHHHHHTCSE----EEEESCHHHHHHHHHHHHH-HHHTCCEEEECTTCHHHHSSTTHHHHHSSCEEEECSCT-
T ss_pred HHHHHHHHHHHHhCCCc----EEEecCcHHHHHHHHHHHh-hcCCCcEEEecccceeeeeccchhhhccCcEEEEecCC-
Confidence 46778999999999853 3555778889999888873 4455 78888777766544322334468999888853
Q ss_pred ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCC-ccccCHHHHHHHHcCCccccccCCCCC
Q 010538 163 AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFS-GSRFNLDLINIMKKNPERILEISPFSK 241 (508)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~t-G~~~~i~~i~~l~~~~~~~~~~~~~~~ 241 (508)
++.+ |+++++ ++ +++++|++++++||| |.++|.+++.++++ +|++
T Consensus 122 ~~~~---------------d~~~l~--~~--------~~~~~v~~~~p~np~~G~~~~~~~l~~i~~---------~~~~ 167 (357)
T 3lws_A 122 DRLM---------------TLDEIK--AL--------PDIACLLLELPQREIGGVAPAFSELETISR---------YCRE 167 (357)
T ss_dssp TSCC---------------CHHHHH--TC--------CSCSEEEEESSBGGGTSBCCCHHHHHHHHH---------HHHH
T ss_pred CCCc---------------CHHHHh--cC--------cCcceEEEEcccccCCceeCCHHHHHHHHH---------HHHH
Confidence 3344 688898 33 237999999999998 99998554444443 3334
Q ss_pred CCeEEEEeccccC------CCCCCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhcccc--ccCceEEecccch
Q 010538 242 GRWMVLIDAAKGC------VTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTY--FSGGTVAASIADI 313 (508)
Q Consensus 242 ~g~~vivD~a~~~------g~~~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~--~g~~~~~~~~~~~ 313 (508)
+|++||+|++|.. +....++. ...|+++.|+||++++|.| |+++.++++++.+.... .++.
T Consensus 168 ~~~~li~D~a~~~~~~~~~~~~~~~~~-~~~d~~~~s~sK~~~~~~g-g~~~~~~~~~~~~~~~~~~~~~~--------- 236 (357)
T 3lws_A 168 RGIRLHLDGARLFEMLPYYEKTAAEIA-GLFDSIYISFYKGLGGIAG-AILAGPAAFCQTARIWKRRYGGD--------- 236 (357)
T ss_dssp TTCEEEEEETTHHHHHHHHTCCHHHHH-TTSSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHHHTTCC---------
T ss_pred cCCEEEEECchhhhhhhhcCCChHHHH-hcCCEEEEeccccCCCCce-EEEEcCHHHHHHHHHHHHHhcCC---------
Confidence 9999999998761 22111111 2478899999999966988 99999988877665321 1100
Q ss_pred hhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEe-cCCCCCcc
Q 010538 314 DFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIY-GTYTSEVS 392 (508)
Q Consensus 314 ~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~-~~~~~~~~ 392 (508)
..+.+....+++ .+++.+ .+. .++..+.++++.+.|+++ +++++. .++.
T Consensus 237 --------------~~~~~~~~~~~~-~~l~~~----~~~-~~~~~~~~~~l~~~L~~~------~g~~~~~~~~~---- 286 (357)
T 3lws_A 237 --------------LISLYPYIVSAD-YYYELR----KDR-MGQYYEQAKQLAEQFNAL------PGVHTTPEVPV---- 286 (357)
T ss_dssp --------------CSCCHHHHHHHH-HHHHHH----TTC-HHHHHHHHHHHHHHHHTS------TTEEEESSSCS----
T ss_pred --------------cccchHHHHHHH-HHHHHH----HHH-HHHHHHHHHHHHHHHHhC------CCCeeccCCCc----
Confidence 011122222222 344432 122 234577788999999987 478874 3333
Q ss_pred cCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCC
Q 010538 393 YHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPT 472 (508)
Q Consensus 393 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 472 (508)
+++++++++.... .+..++.+.|.++||.+++|..+.+ ..
T Consensus 287 ----~~~~~~~~~~~~~--~~~~~~~~~l~~~Gi~v~~g~~~~~----------------------------------~~ 326 (357)
T 3lws_A 287 ----SNMFHLHFDGQAA--DISPKLEQVQEETGLGFVGYLVDKD----------------------------------GY 326 (357)
T ss_dssp ----SSEEEEEEESCHH--HHHHHHHHHHHHHCEESCSCCEECS----------------------------------SE
T ss_pred ----ceEEEEEecCChH--HHHHHHHHHHHhcCeEEecccccCC----------------------------------Cc
Confidence 7899999875310 1124578889999999998843221 14
Q ss_pred ceEEEecCCC---CCHHHHHHHHHhhhhhh
Q 010538 473 GAIRVSFGYM---STFEDAKVNRCSSFDFV 499 (508)
Q Consensus 473 ~~iRis~~~~---~t~eev~~l~~~~~~~~ 499 (508)
+.+|++++.. .+.++++..++.|.+.+
T Consensus 327 ~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 327 CSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp EEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred eEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 6899998844 58888888888876543
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.3e-21 Score=197.68 Aligned_cols=328 Identities=13% Similarity=0.064 Sum_probs=214.2
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..+. +..+|.+++++.+.. ... ......+ .....+++++++++++| .+ +|+||+|+
T Consensus 55 ~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~-~~~-~~~~~~~-----~~~~~~~l~~~la~~~g--~~--~v~~~~gg 123 (420)
T 2pb2_A 55 QGKEYIDFAGGIAVTALGHCHPALVEALKSQG-ETL-WHTSNVF-----TNEPALRLGRKLIDATF--AE--RVLFMNSG 123 (420)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHH-TTC-CCCCTTS-----CCHHHHHHHHHHHHHSS--CS--EEEEESSH
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHH-Hhc-ccccCcc-----CCHHHHHHHHHHHhhCC--CC--eEEEeCCH
Confidence 56789998543 445788888876654 322 1211111 23567788999999997 35 79999999
Q ss_pred HHHHHHHHhhcCC-------CCCCeEEEeccccc-chHHHHHHHHhcCCe------------EEEEccCCccCccccccc
Q 010538 113 TAALKLVGEAFPW-------SHQSSYMYTMENHN-SVLGIREYALSQGAA------------AFAIDVEEAVDNDGLSES 172 (508)
Q Consensus 113 t~al~~~~~~l~~-------~~g~~vl~~~~~h~-s~~~~~~~~~~~G~~------------v~~v~~~~~~~~~~l~~~ 172 (508)
++|+.+++.++.. .+++.||+....|+ ....+... .|.+ +..+|.+
T Consensus 124 teA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~---~g~~~~~~~~~p~~~~~~~~~~~----------- 189 (420)
T 2pb2_A 124 TEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSV---GGQPKYSDGFGPKPADIIHVPFN----------- 189 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHH---SSCHHHHTTSSSCCSCEEEECTT-----------
T ss_pred HHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHh---cCCccccccCCCCCCCeEEecCC-----------
Confidence 9999999988732 23357777765554 44444332 2222 4444431
Q ss_pred cccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCcc-ccC---HHHHHHHHcCCccccccCCCCCCCeEEEE
Q 010538 173 LVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGS-RFN---LDLINIMKKNPERILEISPFSKGRWMVLI 248 (508)
Q Consensus 173 ~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~-~~~---i~~i~~l~~~~~~~~~~~~~~~~g~~viv 248 (508)
|+++++ +++ ++++++|++++++|++|. .+| +++|.++|++ +|+++|+
T Consensus 190 ---------d~~~le--~~i------~~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~------------~gi~lI~ 240 (420)
T 2pb2_A 190 ---------DLHAVK--AVM------DDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDE------------HQALLVF 240 (420)
T ss_dssp ---------CHHHHH--HHC------CTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHH------------TTCEEEE
T ss_pred ---------CHHHHH--HHh------ccCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHH------------cCCEEEE
Confidence 467777 554 357899999999888885 344 5566666665 9999999
Q ss_pred ecccc-CCCCC--C--CCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCcc
Q 010538 249 DAAKG-CVTQP--P--DLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 249 D~a~~-~g~~~--~--d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
|++|+ ++... + +......|++ |++|++++...+|++++++++++.+.+...+.
T Consensus 241 Dev~~g~~~~g~~~~~~~~~~~~dii--t~sK~l~~G~~iG~~~~~~~l~~~l~~~~~~~-------------------- 298 (420)
T 2pb2_A 241 DEVQCGMGRTGDLFAYMHYGVTPDIL--TSAKALGGGFPVSAMLTTQEIASAFHVGSHGS-------------------- 298 (420)
T ss_dssp ECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGTTSCCEEEEECHHHHTTCC----CC--------------------
T ss_pred EcCCcCcccCCcHHHHHhcCCCCCeE--EecccccCCCceEEEEEhHHHHHhhcCCCcCc--------------------
Confidence 99996 22211 1 1122346877 56799882223899999988766554321100
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEE
Q 010538 324 ELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFN 403 (508)
Q Consensus 324 ~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 403 (508)
..+.|....++..++++.+.+ +.+.++++++++++.+.|+++.. +.+.+....+ .+.++++.
T Consensus 299 ----t~~~~~~~~aa~~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~---------~g~~~~v~ 360 (420)
T 2pb2_A 299 ----TYGGNPLACAVAGAAFDIINT---PEVLQGIHTKRQQFVQHLQAIDE--QFDIFSDIRG---------MGLLIGAE 360 (420)
T ss_dssp ----EECCCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHH--HHCCEEEEEE---------ETTEEEEE
T ss_pred ----ccCcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHh--cCCCeEEEEe---------cceEEEEE
Confidence 013455566666777887644 57888999999999999977510 0012322211 16888888
Q ss_pred eeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCC
Q 010538 404 LKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMS 483 (508)
Q Consensus 404 ~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 483 (508)
++.... .+..++.+.|.++||.++++. ++.+|+++++.+
T Consensus 361 ~~~~~~--~~~~~l~~~l~~~Gi~v~~~~---------------------------------------~~~iRl~~~~~~ 399 (420)
T 2pb2_A 361 LKPKYK--GRARDFLYAGAEAGVMVLNAG---------------------------------------ADVMRFAPSLVV 399 (420)
T ss_dssp ECGGGT--TCHHHHHHHHHHTTEECEESS---------------------------------------TTEEEECCCTTC
T ss_pred ECCCch--HHHHHHHHHHHHCCCEEEeCC---------------------------------------CCEEEEECCCCC
Confidence 864210 124568888888999988742 468999999999
Q ss_pred CHHHHHHHHHhhhhhhhh
Q 010538 484 TFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 484 t~eev~~l~~~~~~~~~~ 501 (508)
|.+|++++++.|+++++.
T Consensus 400 t~eei~~~~~~l~~~l~~ 417 (420)
T 2pb2_A 400 EEADIHEGMQRFAQAVGK 417 (420)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999987754
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.3e-22 Score=206.98 Aligned_cols=359 Identities=13% Similarity=0.066 Sum_probs=215.1
Q ss_pred CCCeeeeCCCC---CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGA---TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~a 115 (508)
.+..|+|+.+. .++++.+.+++.. ....+. ......++++.++++++.+ ++++|+|+|+|
T Consensus 40 ~~~~ylD~~~~~~~~~~~~~~~~a~~~---------~~~~y~----~~~~~~~l~~~la~~~~~~----~~~~~~~gt~a 102 (456)
T 2ez2_A 40 SKDIYIDLLTDSGTNAMSDKQWAGMMM---------GDEAYA----GSENFYHLERTVQELFGFK----HIVPTHQGRGA 102 (456)
T ss_dssp GGGCSEECSCSSSCCCCCHHHHHHHTT---------CCCCSS----SCHHHHHHHHHHHHHHCCS----EEEEESSHHHH
T ss_pred cccceeeeccccCCccCCHHHHHHhhc---------chhhcc----cChhHHHHHHHHHHHhCCC----cEEEeCCcHHH
Confidence 56778998653 2556766665421 011121 1234677899999999874 68999999999
Q ss_pred HHHHHhhcCCCCCCeEEEecccc-cchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENH-NSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h-~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
+.+++.++ ..+|+ +++...| +++... +...|++++.++++.+...+.. .......|+++++ +++.+
T Consensus 103 ~~~al~~l-~~~gd--i~~~~~~~~~~~~~---~~~~G~~~~~v~~~~~~~~~~~-----~~~~~~~d~~~l~--~~i~~ 169 (456)
T 2ez2_A 103 ENLLSQLA-IKPGQ--YVAGNMYFTTTRYH---QEKNGAVFVDIVRDEAHDAGLN-----IAFKGDIDLKKLQ--KLIDE 169 (456)
T ss_dssp HHHHHHHH-CCTTC--EEEESSCCHHHHHH---HHHTTCEEEECBCGGGGCTTCC-----CSCTTCBCHHHHH--HHHHH
T ss_pred HHHHHHHh-CCCCC--EeccccccchhHHH---HHHcCCEEEEeccccccccccc-----ccccCCCCHHHHH--HHHHh
Confidence 99999998 67788 4455555 665443 4456999999988632000000 0000012678887 55521
Q ss_pred CCCCCCCceEEEEeCCCC-CCccccC---HHHHHHHHcCCccccccCCCCCCCeEEEEeccccCC---------CCCCCC
Q 010538 195 RDPAGDAYNLFAFPSECN-FSGSRFN---LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCV---------TQPPDL 261 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n-~tG~~~~---i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g---------~~~~d~ 261 (508)
+ ..+.+++|++++++| +||.++| +++|.++|++ +|+++|+|++|+.| ......
T Consensus 170 ~--t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~------------~~i~li~De~~~~g~~~~~~~~~~~~~g~ 235 (456)
T 2ez2_A 170 K--GAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEA------------HGIKVFYDATRCVENAYFIKEQEQGFENK 235 (456)
T ss_dssp H--CGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHH------------TTCCEEEECTTHHHHHHHHHHHSTTCTTS
T ss_pred c--cccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHH------------cCCeEEEEccccccccccccccccccCCc
Confidence 1 002348999998888 9999998 6677777776 99999999999874 211111
Q ss_pred C--------CCCCcEEEEeccccccCCCcceEEEE-echhHhhhcccccc-CceEEecccchhhhhhccCccccccCCCC
Q 010538 262 S--------KYPVDFVVMSFYKIFGYPTGLGALIM-RNDAAKLLKNTYFS-GGTVAASIADIDFVKRRQGVEELFEDGTA 331 (508)
Q Consensus 262 ~--------~~~~D~~~~S~~K~~g~P~G~G~l~~-~~~~~~~l~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 331 (508)
. ....|++++|+||+++ ++..|+++. ++++++.+...... .+. ...++.
T Consensus 236 ~~~~~~~~~~~~~d~~~~S~kk~~~-~~~gG~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~ 294 (456)
T 2ez2_A 236 SIAEIVHEMFSYADGCTMSGKKDCL-VNIGGFLCMNDDEMFSSAKELVVVYEGM--------------------PSYGGL 294 (456)
T ss_dssp CHHHHHHHHHTTCSEEEEETTTTTC-CSSCEEEEESCHHHHHHHHHHHHHHTCC--------------------TTTTTC
T ss_pred chhhhhhhhcccCCEEEEeCcccCC-CCceeEEEECCHHHHHHHHHHHhhccCc--------------------ccccCc
Confidence 1 1236888889999877 433588888 56676655432110 000 001122
Q ss_pred ChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEee----CC
Q 010538 332 SFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLK----RP 407 (508)
Q Consensus 332 ~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~ 407 (508)
+...+.++ ++..+.... +...++..++.+++.+.|++. ++++..|.. ++++++.+. +.
T Consensus 295 ~~~~~~a~--a~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~-------g~~~~~p~~--------~~~~~~~~~~~~~~~ 356 (456)
T 2ez2_A 295 AGRDMEAM--AIGLREAMQ-YEYIEHRVKQVRYLGDKLKAA-------GVPIVEPVG--------GHAVFLDARRFCEHL 356 (456)
T ss_dssp CHHHHHHH--HHHHHHHTC-HHHHHHHHHHHHHHHHHHHHT-------TCCBCSSCC--------SSEEEEEHHHHTTTS
T ss_pred chhHHHHH--HHHHHHHhH-HHHHHHHHHHHHHHHHHHhcC-------CCccccCCC--------ceEEEEEhHHhcCCC
Confidence 32233331 222222222 466777788889999999875 455555432 678888763 22
Q ss_pred CCCccCHHHHHHHH-hhCCCeecc-CCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC-CC
Q 010538 408 DGSWFGYREVEKLA-SLSGIQLRT-GCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM-ST 484 (508)
Q Consensus 408 ~~~~~~~~~l~~~L-~~~gI~v~~-g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~-~t 484 (508)
+...+....+.+.| .++||.+.+ |..|.+.. +.+| . ......+.+|+|++.+ +|
T Consensus 357 ~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~--~~~g-----------~----------~~~~~~~~iRis~~~~~~t 413 (456)
T 2ez2_A 357 TQDEFPAQSLAASIYVETGVRSMERGIISAGRN--NVTG-----------E----------HHRPKLETVRLTIPRRVYT 413 (456)
T ss_dssp CGGGCHHHHHHHHHHHHHSEECEEESHHHHCBC--TTTC-----------S----------BCCCSCCEEEEECCTTTCC
T ss_pred ChhhccHHHHHHHHHHhcCeeeecccccccccC--cccc-----------c----------cccCCCCeEEEEeCCCCCC
Confidence 22222112235555 788998644 44331100 0000 0 0001136899999987 89
Q ss_pred HHHHHHHHHhhhhhhhhhh
Q 010538 485 FEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 485 ~eev~~l~~~~~~~~~~~~ 503 (508)
.+|++++++.|+++++-..
T Consensus 414 ~e~i~~~~~~l~~~l~~~~ 432 (456)
T 2ez2_A 414 YAHMDVVADGIIKLYQHKE 432 (456)
T ss_dssp HHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 9999999999999876543
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-21 Score=208.95 Aligned_cols=311 Identities=15% Similarity=0.095 Sum_probs=194.2
Q ss_pred eEEEcCChHHHHHHHHhhc----CCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccc
Q 010538 105 KCIFTSGATAALKLVGEAF----PWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKIS 180 (508)
Q Consensus 105 ~i~~t~g~t~al~~~~~~l----~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~ 180 (508)
+|++|+|+++++.+++.++ ...+|+.|+++...|+.+..... +...|++++.+|.+.++.+ .
T Consensus 167 ~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~-~~~~g~~~~~v~~~~~~~~-------------~ 232 (546)
T 2zy4_A 167 NLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPE-LAQYALEEVAINADPSLNW-------------Q 232 (546)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHH-STTSCCEEEEEECBGGGTT-------------B
T ss_pred eEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHH-HcCCCcEEEEEecCcccCC-------------C
Confidence 8999999999999998873 25789999999877777665433 2235789999988754432 1
Q ss_pred cchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCC--CCCCeEEEEeccccCCCC-
Q 010538 181 LLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPF--SKGRWMVLIDAAKGCVTQ- 257 (508)
Q Consensus 181 ~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~--~~~g~~vivD~a~~~g~~- 257 (508)
.|+++++ +++ .+++++|++++++||||.++|.+++.++++ +| +++|++||+|++++....
T Consensus 233 ~d~~~l~--~~~------~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~---------~a~~~~~~~~ii~De~y~~~~~~ 295 (546)
T 2zy4_A 233 YPDSELD--KLK------DPAIKIFFCVNPSNPPSVKMDQRSLERVRN---------IVAEHRPDLMILTDDVYGTFADD 295 (546)
T ss_dssp CCHHHHG--GGG------STTEEEEEEESSCSSSCBCCCHHHHHHHHH---------HHHHTCTTCEEEEECTTGGGSTT
T ss_pred CCHHHHH--Hhh------CCCCeEEEEECCCCCCCccCCHHHHHHHHH---------HHHhccCCcEEEEeCcchhhccc
Confidence 2678888 443 467899999999999999999887766655 44 459999999999985332
Q ss_pred CCCCCCC--CCcEEEEeccccccCCCc--ceEEEEech-hHhhhcccc------------ccCceEEecccchhhhhhcc
Q 010538 258 PPDLSKY--PVDFVVMSFYKIFGYPTG--LGALIMRND-AAKLLKNTY------------FSGGTVAASIADIDFVKRRQ 320 (508)
Q Consensus 258 ~~d~~~~--~~D~~~~S~~K~~g~P~G--~G~l~~~~~-~~~~l~~~~------------~g~~~~~~~~~~~~~~~~~~ 320 (508)
+.++... +.++++.|++|++| .+| +|+++++++ +++.+.... ..+.. .+....|.....
T Consensus 296 ~~s~~~~~~~~~i~~~S~SK~~g-~~GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~---~p~~~~~~~~~~ 371 (546)
T 2zy4_A 296 FQSLFAICPENTLLVYSFSKYFG-ATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLP---DVRSLKFIDRLV 371 (546)
T ss_dssp CCCHHHHCGGGEEEEEESTTTTT-CGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCS---CGGGCCHHHHHH
T ss_pred CcCHHHhCCCCEEEEEeCccccC-CCCcceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccc---cccchhhhhhhh
Confidence 2222211 46799999999998 558 799999886 665542110 00000 000000000000
Q ss_pred Cc---cccccCCCCChhHHHHHH--HHHHHHHh--cChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCccc
Q 010538 321 GV---EELFEDGTASFLSIASIR--HGFNLINS--LTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSY 393 (508)
Q Consensus 321 ~~---~~~~~~gt~~~~~~~~l~--~al~~~~~--~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~ 393 (508)
.. .......+.+.+...++. +...++.+ ...+.+++.+++.++++.+.|. . ++....+.
T Consensus 372 ~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~~~~~~~~~r~~~~~r~~~l~~~L~-~-------~~~~~~~~------ 437 (546)
T 2zy4_A 372 ADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEYKHTLKQLIRRRETTLYRELG-M-------PPLRDENA------ 437 (546)
T ss_dssp HHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHGGGT-S-------SCCCCTTB------
T ss_pred hhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC-C-------CcccCCCC------
Confidence 00 000111233333333321 12233332 2245666777777777777664 3 23222222
Q ss_pred CCCCceEEEEeeCC----CCC--------cc-CHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCcc
Q 010538 394 HDTGSMVSFNLKRP----DGS--------WF-GYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVC 460 (508)
Q Consensus 394 ~~~~~~v~~~~~~~----~~~--------~~-~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 460 (508)
.+.+++++++.. .+. .. +...+.+.+.++||.+.+|..|..
T Consensus 438 --~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~~gV~v~pG~~F~~------------------------ 491 (546)
T 2zy4_A 438 --VDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPGRGFGS------------------------ 491 (546)
T ss_dssp --CCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSCCCEESSCTTC------------------------
T ss_pred --eeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHHHCCEEEeCccccCC------------------------
Confidence 266778887531 000 00 113367788899999999986643
Q ss_pred CCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 461 WDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 461 ~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
.++++|||++ ..++++++++++.|+++++.
T Consensus 492 ----------~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~ 521 (546)
T 2zy4_A 492 ----------NRPSGRASLA-NLNEYEYAAIGRALRKMADE 521 (546)
T ss_dssp ----------SSCEEEEESS-SSCHHHHHHHHHHHHHHHHH
T ss_pred ----------CCCeEEEEec-cCCHHHHHHHHHHHHHHHHH
Confidence 1578999998 45899999999999987654
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-20 Score=194.91 Aligned_cols=330 Identities=11% Similarity=0.049 Sum_probs=212.6
Q ss_pred CCCeeeeCCC---C---CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG---A---TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~---~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..+ . +..+|.+++++.+.. ... ......+ ......++++.++++++ .+ +|+|++|+
T Consensus 63 ~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~-~~~-~~~~~~~-----~~~~~~~l~~~la~~~g--~~--~v~~~~sG 131 (433)
T 1z7d_A 63 NDKRYYDFLSAYSSVNQGHCHPNILNAMINQA-KNL-TICSRAF-----FSVPLGICERYLTNLLG--YD--KVLMMNTG 131 (433)
T ss_dssp TCCEEEESSHHHHTTTTCBTCHHHHHHHHHHH-TTC-SCCCTTS-----EEHHHHHHHHHHHHHHT--CS--EEEEESSH
T ss_pred CCCEEEEcccchhhcccCCCCHHHHHHHHHHH-HhC-CCccCCc-----CCHHHHHHHHHHHhhcC--CC--eEEEeCCH
Confidence 5678999755 1 225788888876654 222 1111111 23456778889999997 45 79999999
Q ss_pred HHHHHHHHhhcC--------CCCC-CeEEEecccccc-hHHHHHHHHh----cC-----CeEEEEccCCccCcccccccc
Q 010538 113 TAALKLVGEAFP--------WSHQ-SSYMYTMENHNS-VLGIREYALS----QG-----AAAFAIDVEEAVDNDGLSESL 173 (508)
Q Consensus 113 t~al~~~~~~l~--------~~~g-~~vl~~~~~h~s-~~~~~~~~~~----~G-----~~v~~v~~~~~~~~~~l~~~~ 173 (508)
++|+.+++.++. ..+| +.||+.+..|.+ +..+...... .+ ..+..+|.+
T Consensus 132 seA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~------------ 199 (433)
T 1z7d_A 132 AEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYD------------ 199 (433)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTT------------
T ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCCC------------
Confidence 999999888752 1345 788877655443 3333332210 00 234444432
Q ss_pred ccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCcccc----CHHHHHHHHcCCccccccCCCCCCCeEEEEe
Q 010538 174 VTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRF----NLDLINIMKKNPERILEISPFSKGRWMVLID 249 (508)
Q Consensus 174 ~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~----~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD 249 (508)
|+++++ ++++ ++++++|+++.+++++|.+. ++++|.++|++ +|+++|+|
T Consensus 200 --------d~~~le--~~l~-----~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~------------~g~llI~D 252 (433)
T 1z7d_A 200 --------DLEALE--EELK-----DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKK------------YNVLFVAD 252 (433)
T ss_dssp --------CHHHHH--HHHT-----STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHH------------TTCEEEEE
T ss_pred --------CHHHHH--HHhC-----CCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHH------------cCCEEEEe
Confidence 356666 4442 35789999988888899876 67888888887 99999999
Q ss_pred cccc-CCCCCC----CCCCCCCcEEEEeccccccCCC--cceEEEEechhHhhhccccccCceEEecccchhhhhhccCc
Q 010538 250 AAKG-CVTQPP----DLSKYPVDFVVMSFYKIFGYPT--GLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGV 322 (508)
Q Consensus 250 ~a~~-~g~~~~----d~~~~~~D~~~~S~~K~~g~P~--G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~ 322 (508)
++|+ +|.... +.....+|++ |++|+++ +. .+|++++++++++.+.+...+
T Consensus 253 Ev~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~-~G~~~~G~v~~~~~~~~~l~~~~~~-------------------- 309 (433)
T 1z7d_A 253 EVQTGLGRTGKLLCVHHYNVKPDVI--LLGKALS-GGHYPISAVLANDDIMLVIKPGEHG-------------------- 309 (433)
T ss_dssp CTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGG-TTSSCCEEEEECHHHHTTCCTTCCC--------------------
T ss_pred cCccCCCcCCcchhhHhcCCCCCEE--EECcccc-CCCCCeEEEEECHHHHhhhcccccc--------------------
Confidence 9997 332111 1112346877 5669988 52 289999999887665542111
Q ss_pred cccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEE
Q 010538 323 EELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSF 402 (508)
Q Consensus 323 ~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 402 (508)
...+.|....++..++++.+.+ +.+.+++.++++++.+.|+++.. +.+.+..+.+ .+.++++
T Consensus 310 ----~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~--~~~~~~~~~~---------~g~~~~i 371 (433)
T 1z7d_A 310 ----STYGGNPLAASICVEALNVLIN---EKLCENAEKLGGPFLENLKRELK--DSKIVRDVRG---------KGLLCAI 371 (433)
T ss_dssp ----CTTTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHT--TCTTEEEEEE---------ETTEEEE
T ss_pred ----ccCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHH--hCCCeEEEEe---------eeeEEEE
Confidence 0113455666677778887765 25678888999999999876510 0122222211 2788889
Q ss_pred EeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC
Q 010538 403 NLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM 482 (508)
Q Consensus 403 ~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 482 (508)
.+++.. .+...+.+.|.++||.++++. .+.+|+++++.
T Consensus 372 ~~~~~~---~~~~~~~~~l~~~Gv~v~~~~---------------------------------------~~~iRi~~~~~ 409 (433)
T 1z7d_A 372 EFKNEL---VNVLDICLKLKENGLITRDVH---------------------------------------DKTIRLTPPLC 409 (433)
T ss_dssp EECTTT---CCHHHHHHHHHHTTEECCEET---------------------------------------TTEEEECCCTT
T ss_pred EEccCh---hHHHHHHHHHHHCCeEEecCC---------------------------------------CCEEEEECCcC
Confidence 886431 123468888888999987631 46899999999
Q ss_pred CCHHHHHHHHHhhhhhhhh
Q 010538 483 STFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 483 ~t~eev~~l~~~~~~~~~~ 501 (508)
+|++|++++++.|+++++.
T Consensus 410 ~t~e~i~~~l~~l~~~l~~ 428 (433)
T 1z7d_A 410 ITKEQLDECTEIIVKTVKF 428 (433)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999988754
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.6e-21 Score=199.84 Aligned_cols=346 Identities=12% Similarity=0.052 Sum_probs=212.6
Q ss_pred CCCeeeeCCCCC---C---C-CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC-CCCceEEEcC
Q 010538 39 NGTVYLDHAGAT---L---Y-SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS-MKDYKCIFTS 110 (508)
Q Consensus 39 ~~~iyld~~~~~---~---~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~~~i~~t~ 110 (508)
++..|+|..++. + . +|.+++++.+.+. .........+. .....+.++.++++++++ ++ +|+||+
T Consensus 40 ~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~-~~~~~~~~~~~-----~~~~~~l~~~la~~~~~~~~~--~v~~~~ 111 (419)
T 2eo5_A 40 DGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQ-KLAHAAANDFY-----NIPQLELAKKLVTYSPGNFQK--KVFFSN 111 (419)
T ss_dssp TSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHT-TSCCCSCSCSC-----CHHHHHHHHHHHHHSSCSSCE--EEEEES
T ss_pred CCCEEEEccCChhhhccCCCCCHHHHHHHHHHHh-hCccccccccC-----CHHHHHHHHHHHHhCCCCcCC--EEEEeC
Confidence 567899986543 2 2 7888888866542 22100001111 234566778999999998 77 899999
Q ss_pred ChHHHHHHHHhhcCCCCCCeEEEecc-cccchHHHHHHH-----Hhc-----CCeEEEEccCCccCcc-cccccc-cccc
Q 010538 111 GATAALKLVGEAFPWSHQSSYMYTME-NHNSVLGIREYA-----LSQ-----GAAAFAIDVEEAVDND-GLSESL-VTST 177 (508)
Q Consensus 111 g~t~al~~~~~~l~~~~g~~vl~~~~-~h~s~~~~~~~~-----~~~-----G~~v~~v~~~~~~~~~-~l~~~~-~~~~ 177 (508)
|+++|+++++.++....|+.||+... .|+.+....... .+. +..++.+|.+...... ..+... +...
T Consensus 112 gg~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~ 191 (419)
T 2eo5_A 112 SGTEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSEL 191 (419)
T ss_dssp SHHHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHH
T ss_pred chHHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhh
Confidence 99999999988652212777777764 444554444321 111 2357777775321100 000000 0000
Q ss_pred ccccchhhhh-cCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEeccc
Q 010538 178 KISLLPIQRR-KGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAK 252 (508)
Q Consensus 178 ~~~~d~~~l~-~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~ 252 (508)
.- .|+++++ + ++++ ....+++++|+++.++|+||.+.+ +++|.++|++ +|+++|+|++|
T Consensus 192 ~~-~~~~~l~~~--~i~~-~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~------------~~~~li~DE~~ 255 (419)
T 2eo5_A 192 VN-RVIEFIEDY--IFVN-LVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKK------------YGILLVDDEVQ 255 (419)
T ss_dssp HH-HHHHHHHHT--HHHH-TCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHH------------HTCEEEEECTT
T ss_pred HH-HHHHHHHHH--HHhh-ccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHH------------cCCEEEEeccc
Confidence 00 0233332 1 0100 000146788888877788998777 7888888887 99999999999
Q ss_pred c-CCCCC----CCCCCCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccc
Q 010538 253 G-CVTQP----PDLSKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELF 326 (508)
Q Consensus 253 ~-~g~~~----~d~~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 326 (508)
+ +|... .+......|++ |++|.++++ .++|+++++++++ .+ +. . . .
T Consensus 256 ~~~g~~g~~~~~~~~~~~~d~~--t~sK~~~~G~~riG~~~~~~~~~-~~-~~---~-~--------------------~ 307 (419)
T 2eo5_A 256 MGLGRTGKLFAIENFNTVPDVI--TLAKALGGGIMPIGATIFRKDLD-FK-PG---M-H--------------------S 307 (419)
T ss_dssp TTTTTTSSSSGGGGGTCCCSEE--EECGGGGTTTSCCEEEEEEGGGC-CC------------------------------
T ss_pred cCCccCcchhhHHhcCCCCCEE--EecccccCCccceEEEEEchHhh-cC-Cc---c-c--------------------C
Confidence 8 54322 12222346766 566988843 4589999998865 33 21 0 0 0
Q ss_pred cCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeC
Q 010538 327 EDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKR 406 (508)
Q Consensus 327 ~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 406 (508)
...+.|..++++..++++.+.+ +.+++++++++|.+.|+++ +..+.+ .++++++.+..
T Consensus 308 ~t~~~n~~~~~aa~aal~~~~~-----~~~~~~~~~~~l~~~L~~~--------~~~~~~---------~g~~~~i~~~~ 365 (419)
T 2eo5_A 308 NTFGGNALACAIGSKVIDIVKD-----LLPHVNEIGKIFAEELQGL--------ADDVRG---------IGLAWGLEYNE 365 (419)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTTS--------SSEEEE---------ETTEEEEECSC
T ss_pred CCCCCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHh--------hhheEe---------eeEEEEEEEec
Confidence 1123466677777778886543 7788999999999999764 111111 16788887731
Q ss_pred CCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHH
Q 010538 407 PDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFE 486 (508)
Q Consensus 407 ~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~e 486 (508)
. . -... +.+.|.++||.++++. .+++||++++.+|.+
T Consensus 366 ~-~--~~~~-~~~~l~~~Gv~v~~~~---------------------------------------~~~lRis~~~~~t~e 402 (419)
T 2eo5_A 366 K-K--VRDR-IIGESFKRGLLLLPAG---------------------------------------RSAIRVIPPLVISEE 402 (419)
T ss_dssp H-H--HHHH-HHHHHHHTTEECEEET---------------------------------------TTEEEECCCTTCCHH
T ss_pred C-c--cHHH-HHHHHHHCCCEEecCC---------------------------------------CCEEEEECCCCCCHH
Confidence 0 0 0123 6777778999998741 468999999999999
Q ss_pred HHHHHHHhhhhhhhh
Q 010538 487 DAKVNRCSSFDFVNF 501 (508)
Q Consensus 487 ev~~l~~~~~~~~~~ 501 (508)
|++++++.|+++++.
T Consensus 403 ~i~~~l~~l~~~l~~ 417 (419)
T 2eo5_A 403 EAKQGLDILKKVIKV 417 (419)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999987654
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-21 Score=200.12 Aligned_cols=324 Identities=12% Similarity=0.021 Sum_probs=202.2
Q ss_pred HHHHHHHHH-HHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC-
Q 010538 85 IVRAAREQV-LDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE- 162 (508)
Q Consensus 85 ~~~~~r~~l-a~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~- 162 (508)
..+++++.+ |+++|. .+ ++++++|+|+|+++++.++..++|++|+++...|+++.... ...|++++.++++.
T Consensus 37 ~~~~l~~~~~a~~~g~-~~--~~v~~~sgt~al~~al~~l~~~~Gd~Vi~~~~~~~~~~~~~---~~~G~~~~~v~~~~~ 110 (377)
T 3ju7_A 37 INQRFEQTIMSGFFQN-RG--AVTTVANATLGLMAAIQLKKRKKGKYALMPSFTFPATPLAA---IWCGLEPYFIDISID 110 (377)
T ss_dssp HHHHHHHHHHHHTSTT-CS--EEEEESCHHHHHHHHHHHHSCTTCCEEEEESSSCTHHHHHH---HHTTCEEEEECBCTT
T ss_pred HHHHHHHHHHHHHhCC-CC--eEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHH---HHcCCEEEEEecCCc
Confidence 367889999 999993 34 68999999999999999976789999999999998876554 45699999999873
Q ss_pred ccCccccccccccccccccchhhhhcCCCCCCCCCCCCC--ceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCC
Q 010538 163 AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDA--YNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFS 240 (508)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~--t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~ 240 (508)
+..+ |+++++ +++. +++ |++|+ ++|++|...|+++|.++|+
T Consensus 111 ~~~~---------------d~~~l~--~~i~-----~~~~~tk~v~---~~~~~G~~~~~~~i~~la~------------ 153 (377)
T 3ju7_A 111 DWYM---------------DKTVLW--DKIE-----ELKEEVAIVV---PYATFGSWMNLEEYEELEK------------ 153 (377)
T ss_dssp TCSB---------------CHHHHH--HHHH-----HHGGGEEEEC---CBCGGGBCCCCHHHHHHHH------------
T ss_pred cCCc---------------CHHHHH--HHHh-----cCCCCceEEE---EECCCCCccCHHHHHHHHh------------
Confidence 4444 678887 4431 234 88887 4578999999999999888
Q ss_pred CCCeEEEEeccccCCCCCCCCCCC---CCcEEEEe--ccccccCCCcceEEEEec-hhHhhhccccccCceEEecccchh
Q 010538 241 KGRWMVLIDAAKGCVTQPPDLSKY---PVDFVVMS--FYKIFGYPTGLGALIMRN-DAAKLLKNTYFSGGTVAASIADID 314 (508)
Q Consensus 241 ~~g~~vivD~a~~~g~~~~d~~~~---~~D~~~~S--~~K~~g~P~G~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~ 314 (508)
+|++||+|++|++|... +.... ..|+.++| .||+++ +...|+++.++ ++.++++.....+... .
T Consensus 154 -~~~~vi~D~a~a~g~~~-~~~~~g~~~~d~~~~S~~~~K~l~-~g~gG~~~~~~~~l~~~~~~~~~~g~~~-------~ 223 (377)
T 3ju7_A 154 -KGVPVVVDAAPGFGLMN-GGMHYGQDFSGMIIYSFHATKPFG-IGEGGLIYSKNEEDIQRIKRMGNFGFDT-------N 223 (377)
T ss_dssp -TTCCBEEECTTCTTCEE-TTEETTTTCSSEEEEECBTTSSSC-CBSCEEEEESCHHHHHHHHHHTBTTBCT-------T
T ss_pred -cCCEEEEECCCccCCeE-CCEeccCCCCcEEEEECCCCCcCC-CCCcEEEEECCHHHHHHHHHHHhcCCCC-------C
Confidence 69999999999988642 22222 14555555 679998 42246666654 4555555443322110 0
Q ss_pred hhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEE-ecCCCCCccc
Q 010538 315 FVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTI-YGTYTSEVSY 393 (508)
Q Consensus 315 ~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~-~~~~~~~~~~ 393 (508)
+ ......+..+..++...+++. .+ ..++.+.++.+++++++.+.|++++ ++++ +.+....
T Consensus 224 ~----~~~~~g~~~~~~~~~aa~~~~-~l-----~~l~~~~~~~~~~~~~~~~~L~~~~------~~~~~~~~~~~~--- 284 (377)
T 3ju7_A 224 R----ECTMMGFNCKMSEYAAAIGIA-TM-----KKWDDKLKERTRISEWYKQLLQSNG------LMKKGWQLQKTE--- 284 (377)
T ss_dssp S----CBCSSCCBCCCCHHHHHHHHH-HH-----HTHHHHHHHHHHHHHHHHHHHHHTT------TTTTTCBCCCCS---
T ss_pred C----ceeeccccCCCCHHHHHHHHH-HH-----HHHHHHHHHHHHHHHHHHHHhcCCC------CccccccCCCCC---
Confidence 0 000111111222222222111 22 2367778888999999999998863 2211 1111110
Q ss_pred CCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCC--CCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCC
Q 010538 394 HDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGC--FCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKP 471 (508)
Q Consensus 394 ~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~--~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 471 (508)
..-..++.+.+++. .+...+.+.|.++||.++.+. .|.... .+. ++.+..++. -....
T Consensus 285 ~~~~~~~~~~~~~~----~~~~~l~~~L~~~gI~~~~~~~~~~~~~~---~~~---~~~~~~~p~----------~~~~~ 344 (377)
T 3ju7_A 285 AVIQQFMPILCPEE----VRNKQVIEDLKKQKIEARLYFSPSCHQQV---LFR---NYKSTDLTR----------TNKIA 344 (377)
T ss_dssp CBCCSSEEEECCTT----SCHHHHHHHHHTTTBCCBCTTSSCGGGSG---GGT---TSCBSCCHH----------HHHHH
T ss_pred cceEEEEEEEeCCh----hhHHHHHHHHHHCCCceecccCCccccch---hhh---cCCCCCCHH----------HHHHH
Confidence 00122345565542 124568999999999998875 232211 111 000000100 00113
Q ss_pred CceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 472 TGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 472 ~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
.+.||++++...|++|++++++.|++++.
T Consensus 345 ~~~l~lp~~~~~t~~di~~v~~~l~~~~~ 373 (377)
T 3ju7_A 345 KRIVSLPLWEGMTKEIVEQIVICLGQKVV 373 (377)
T ss_dssp HHEEEECCCTTCCHHHHHHHHHHHTC---
T ss_pred hCEEECCCCCCCCHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999988764
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.5e-21 Score=198.63 Aligned_cols=357 Identities=10% Similarity=-0.030 Sum_probs=207.8
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..++ +..+|.+++++.+... .. ...... ........+++++++++++.+.+ +|+||+|+
T Consensus 27 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~-~~~~~~----~~~~~~~~~l~~~la~~~~~~~~--~v~~~~gg 98 (430)
T 3i4j_A 27 AGRRYLDGSSGALVANIGHGRAEVGERMAAQAA-RL-PFVHGS----QFSSDVLEEYAGRLARFVGLPTF--RFWAVSGG 98 (430)
T ss_dssp TSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHH-HC-CCCCTT----TCEEHHHHHHHHHHHHHTTCTTC--EEEEESSH
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHH-hc-cccccc----ccCCHHHHHHHHHHHHhCCCCCC--EEEEeCcH
Confidence 56778998763 2238888888766543 21 111110 11234567788999999998888 89999999
Q ss_pred HHHHHHHHhhcCC-------CCCCeEEEecccccchHHHHHHHHhc-CC-----------eEEEEccCCccCcccccccc
Q 010538 113 TAALKLVGEAFPW-------SHQSSYMYTMENHNSVLGIREYALSQ-GA-----------AAFAIDVEEAVDNDGLSESL 173 (508)
Q Consensus 113 t~al~~~~~~l~~-------~~g~~vl~~~~~h~s~~~~~~~~~~~-G~-----------~v~~v~~~~~~~~~~l~~~~ 173 (508)
++|+.+++.++.. .+++.|++.+..|+.+......+... .. .+..+|.......
T Consensus 99 ~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 171 (430)
T 3i4j_A 99 SEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARN------- 171 (430)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSC-------
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccch-------
Confidence 9999998887632 34678888776665543322211110 00 2222332211000
Q ss_pred ccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCC-CCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEE
Q 010538 174 VTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECN-FSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLI 248 (508)
Q Consensus 174 ~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n-~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~viv 248 (508)
-..|+++++ +++.+. ..+++++|++..+++ ++|.+.+ +++|.++|++ +|+++|+
T Consensus 172 -----~~~~~~~le--~~l~~~--~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~------------~~~~li~ 230 (430)
T 3i4j_A 172 -----GAEDAEGLR--ALLERE--GPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDE------------AGIIFIA 230 (430)
T ss_dssp -----HHHHHTHHH--HHHHHH--CGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHH------------HTCEEEE
T ss_pred -----hhHHHHHHH--HHHHhc--CCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHH------------cCCEEEE
Confidence 001345565 444210 014678888888888 9999888 8888888887 9999999
Q ss_pred ecccc-CCCCC--CCCC---CCCCcEEEEeccccccCCCc---ceEEEEechhHhhhccccccCceEEecccchhhhhhc
Q 010538 249 DAAKG-CVTQP--PDLS---KYPVDFVVMSFYKIFGYPTG---LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRR 319 (508)
Q Consensus 249 D~a~~-~g~~~--~d~~---~~~~D~~~~S~~K~~g~P~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~ 319 (508)
|++|+ ++... .... ....|+++ ++|.++ + | +|++++++++++.+.+.-..
T Consensus 231 DEv~~~~~~~g~~~~~~~~~~~~~di~t--~sK~l~-~-G~~r~G~~~~~~~i~~~~~~~~~~----------------- 289 (430)
T 3i4j_A 231 DEVMSGMGRCGSPLALSRWSGVTPDIAV--LGKGLA-A-GYAPLAGLLAAPQVYETVMGGSGA----------------- 289 (430)
T ss_dssp ECTTTTTTTTSSSSGGGGTTTCCCSEEE--ECGGGT-T-TSSCCEEEEECHHHHHHHHHTTCB-----------------
T ss_pred echhhCCCcccchhhhhhhcCCCCcEEE--Eccccc-C-CccccEEEEECHHHHHHHhccCCc-----------------
Confidence 99987 43221 1111 22356665 559988 4 5 79999999987766542000
Q ss_pred cCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCce
Q 010538 320 QGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSM 399 (508)
Q Consensus 320 ~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (508)
.......+.|...+++..++++.+.+ +.+.++++++.+++++.|.++.. ..+++..+.+. +.+
T Consensus 290 ---~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~---------g~~ 352 (430)
T 3i4j_A 290 ---FMHGFTYAGHPVSVAAGLSVLDIVER---EDLTGAAKERGAQLLAGLQALQA--RFPQMMQVRGT---------GLL 352 (430)
T ss_dssp ---CCCCCTTTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHH--HCTTEEEEEEE---------TTE
T ss_pred ---ccccCCCCCCHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHHHHHH--hCCCeEEEEEE---------EEE
Confidence 00001123455666666777887655 34455666666666666554310 00245444332 678
Q ss_pred EEEEeeCCCCCc-----cCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCce
Q 010538 400 VSFNLKRPDGSW-----FGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGA 474 (508)
Q Consensus 400 v~~~~~~~~~~~-----~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (508)
+++.+.+..... -...++.+.|.++||.++++..+..+. .+++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--------------------------------~~~~ 400 (430)
T 3i4j_A 353 LGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNG--------------------------------RGDH 400 (430)
T ss_dssp EEEEEC------------CHHHHHHHHHHTTEECC-------------------------------------------CE
T ss_pred EEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEecccccCCC--------------------------------CCCE
Confidence 888875422110 012457888889999999864332221 2578
Q ss_pred EEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 475 IRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 475 iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
+||++++..|.+|+++++++|+++++.
T Consensus 401 iRi~~~~~~t~e~i~~~l~~l~~~l~~ 427 (430)
T 3i4j_A 401 LLLGPPLSITAAEVDGLLALLAGALED 427 (430)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988764
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.3e-22 Score=205.13 Aligned_cols=309 Identities=11% Similarity=0.060 Sum_probs=210.2
Q ss_pred HHHHHhhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEE
Q 010538 28 QIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCI 107 (508)
Q Consensus 28 ~~r~~~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~ 107 (508)
.++. +|+.+ +..++.|. ..+++++.+.......-++.+.+..+.. ..+++++.+|+++|++.. ++
T Consensus 15 ~~~~-~~~~~-~~~~~~n~-------~~vl~a~~~~~~~~~~~~~~~~~~y~~~---~~~~Le~~lA~l~g~e~a---lv 79 (409)
T 3jzl_A 15 QIDD-LQNKT-DEIAEFNQ-------AKVLDAFQENKVSDFHFHPSTGYGYDDE---GRDTLERVYATVFKTEAA---LV 79 (409)
T ss_dssp HHHH-HHHHH-HHHHHHHH-------HHHHHHHHHTTCCGGGGCCCCTTCTTCH---HHHHHHHHHHHHHTCSEE---EE
T ss_pred HHHH-HHHHH-HHHHHhhH-------HHHHHHHHHhhhhhhccCCCcCCCCChh---HHHHHHHHHHHHhCCCcE---EE
Confidence 4666 78877 67777773 5677777664332222233333333322 266788999999999744 55
Q ss_pred E--cCChHHHHHHHHhhcCCCCCCeEEEec-ccccchHHHH-------HHHHhcCCeEEEEccCCccCcccccccccccc
Q 010538 108 F--TSGATAALKLVGEAFPWSHQSSYMYTM-ENHNSVLGIR-------EYALSQGAAAFAIDVEEAVDNDGLSESLVTST 177 (508)
Q Consensus 108 ~--t~g~t~al~~~~~~l~~~~g~~vl~~~-~~h~s~~~~~-------~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~ 177 (508)
+ ++|+++|+.+++.++ .++|++|+++. ..|+++.... ..++..|++++.+|.+.++.+
T Consensus 80 ~p~~~sGt~Ai~~al~al-l~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~----------- 147 (409)
T 3jzl_A 80 RPQIISGTHAISTVLFGI-LRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDV----------- 147 (409)
T ss_dssp ETTSCSHHHHHHHHHHHH-CCTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCTTSCC-----------
T ss_pred ECCCccHHHHHHHHHHHh-cCCCCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCCCCCc-----------
Confidence 4 888999999999998 78899999997 7777776554 345667999999998766656
Q ss_pred ccccchhhhhcCCCCCCCCCCCCCceEEEEeC----CCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEecccc
Q 010538 178 KISLLPIQRRKGASFPERDPAGDAYNLFAFPS----ECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKG 253 (508)
Q Consensus 178 ~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~----~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~ 253 (508)
|+++++ +++ +++|++|++++ ++|+||.+.|+++|.++|++ ..+|+++++|++++
T Consensus 148 ----d~e~l~--~ai------~~~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~----------~~~~~~livD~a~~ 205 (409)
T 3jzl_A 148 ----DFPRIA--KKM------TPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKN----------INPEVIVFVDNCYG 205 (409)
T ss_dssp ----CHHHHH--HHC------CTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHH----------HCTTCEEEEECTTC
T ss_pred ----CHHHHH--Hhc------cCCCeEEEEECCCCCCCCCcCccccHHHHHHHHHh----------hCCCCEEEEeCCcc
Confidence 688888 555 46899999999 99999999999999999984 01699999999998
Q ss_pred CCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCC
Q 010538 254 CVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTA 331 (508)
Q Consensus 254 ~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 331 (508)
.+....+....++|++++|+||++|++.. .|+++.++++++.+.......+ .....|..
T Consensus 206 ~~~~~~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~-------------------~g~~~g~~ 266 (409)
T 3jzl_A 206 EFVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPG-------------------IGREAGAS 266 (409)
T ss_dssp TTTSSCCSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTT-------------------TGGGCCCC
T ss_pred cccccCCccccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhcccc-------------------cccccccc
Confidence 77644444556899999999999984321 3999999988887764311100 00111211
Q ss_pred ChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCc
Q 010538 332 SFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSW 411 (508)
Q Consensus 332 ~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 411 (508)
.....++...++. ...+.++..+.+.++.+.|+++ +++++..+.. .++..+++|.+++.+
T Consensus 267 -~~~~~~~l~gl~~-----~~~r~~~~~~~a~~la~~L~~~-------g~~v~p~~~~----~~~~~i~~i~l~~~~--- 326 (409)
T 3jzl_A 267 -LYSLLEMYQGFFL-----APHVTAQAIKGARFTAAMLAEF-------GVEADPVWDA----PRTDLIQSVSFHNKE--- 326 (409)
T ss_dssp -TTCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHT-------TCEEESCTTS----CCSSSCCEEECSCHH---
T ss_pred -HHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHhC-------CCcccCCCCC----CCccEEEEEEeCCHH---
Confidence 1112223333333 3556777888999999999987 4666432211 123448888886321
Q ss_pred cCHHHHHHHHhhCC
Q 010538 412 FGYREVEKLASLSG 425 (508)
Q Consensus 412 ~~~~~l~~~L~~~g 425 (508)
....+.+.|++..
T Consensus 327 -~~~~~~~~L~~~~ 339 (409)
T 3jzl_A 327 -KMVAFAQAIQAAS 339 (409)
T ss_dssp -HHHHHHHHHHHTS
T ss_pred -HHHHHHHHHHhcC
Confidence 2234667777664
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.7e-21 Score=200.23 Aligned_cols=361 Identities=11% Similarity=-0.002 Sum_probs=223.3
Q ss_pred CCCeeeeCC------CCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHA------GATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|.. ..+..+|.+++++.+.+ .... ... .. ........++++.++++++.+++ +|+||+|+
T Consensus 48 ~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~-~~~~--~~~-~~--~~~~~~~~~l~~~la~~~~~~~~--~v~~~~gg 119 (449)
T 3a8u_X 48 KGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQL-STLD--YSP-GF--QYGHPLSFQLAEKITDLTPGNLN--HVFFTDSG 119 (449)
T ss_dssp TCCEEEETTHHHHTCTTCBSCHHHHHHHHHHT-TTCS--CCC-SS--SCCCHHHHHHHHHHHTTSSTTEE--EEEEESSH
T ss_pred CCCEEEECCccHhhccCCCCCHHHHHHHHHHH-HhCC--Ccc-cc--ccCCHHHHHHHHHHHHhCCCCCC--EEEEcCcH
Confidence 567889985 23445788888876654 3221 111 10 01234567888999999988777 89999999
Q ss_pred HHHHHHHHhhcCC-------CCCCeEEEecccc-cchHHHHHHHH----hcC-----CeEEEEccCCccCc--ccccccc
Q 010538 113 TAALKLVGEAFPW-------SHQSSYMYTMENH-NSVLGIREYAL----SQG-----AAAFAIDVEEAVDN--DGLSESL 173 (508)
Q Consensus 113 t~al~~~~~~l~~-------~~g~~vl~~~~~h-~s~~~~~~~~~----~~G-----~~v~~v~~~~~~~~--~~l~~~~ 173 (508)
++|+++++.++.. ++++.||+....| .....+..... +.+ ..+..++....... ..++
T Consensus 120 sea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d--- 196 (449)
T 3a8u_X 120 SECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGM--- 196 (449)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSS---
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCC---
Confidence 9999999887631 1567787765444 44444443311 001 13445544311000 0000
Q ss_pred ccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEe
Q 010538 174 VTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLID 249 (508)
Q Consensus 174 ~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD 249 (508)
....-..++++++ ++|++. ..+++++|+++.++++||.+.| +++|.++|++ +|+++|+|
T Consensus 197 -~~~~~~~~~~~le--~~l~~~--~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~------------~~~~li~D 259 (449)
T 3a8u_X 197 -PKEGGIALADELL--KLIELH--DASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQ------------HNILLVFD 259 (449)
T ss_dssp -CSSSHHHHHHHHH--HHHHHH--CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHH------------HTCEEEEE
T ss_pred -hHHHHHHHHHHHH--HHHHhc--CCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHH------------hCCEEEEe
Confidence 0000000166666 444211 0146788888888888999998 9999999997 99999999
Q ss_pred cccc-CCCCC--CCCC--CCCCcEEEEeccccccCCCc---ceEEEEechhHhhhccccccCceEEecccchhhhhhccC
Q 010538 250 AAKG-CVTQP--PDLS--KYPVDFVVMSFYKIFGYPTG---LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQG 321 (508)
Q Consensus 250 ~a~~-~g~~~--~d~~--~~~~D~~~~S~~K~~g~P~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~ 321 (508)
++|+ +|... ..+. ....|++ |++|+++ + | +|++++++++++.+.+...+... .
T Consensus 260 ev~~~~g~~g~~~~~~~~~~~~di~--s~sK~l~-~-G~~~~G~~~~~~~~~~~l~~~~~~~~~---------------~ 320 (449)
T 3a8u_X 260 EVITGFGRTGSMFGADSFGVTPDLM--CIAKQVT-N-GAIPMGAVIASTEIYQTFMNQPTPEYA---------------V 320 (449)
T ss_dssp CTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGG-T-TSSCCEEEEEEHHHHHHHHTCSSCTTS---------------C
T ss_pred ccccCccccCcchhhhhcCCCCCEE--EEccccc-C-CCCceEEEEECHHHHHHhhccCccccc---------------c
Confidence 9994 66432 1112 2246876 5669988 5 5 89999998887766542100000 0
Q ss_pred ccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEE
Q 010538 322 VEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVS 401 (508)
Q Consensus 322 ~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 401 (508)
........+.|..++++..++++.+.+. .+.++++++.+++++.|+++.. .+.+..+.+ .+.+++
T Consensus 321 ~~~~~~t~~~~~~~~aa~~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~---~~~~~~~~~---------~g~~~~ 385 (449)
T 3a8u_X 321 EFPHGYTYSAHPVACAAGLAALCLLQKE---NLVQSVAEVAPHFEKALHGIKG---AKNVIDIRN---------FGLAGA 385 (449)
T ss_dssp SSCCCCTTTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHTTTT---STTEEEEEE---------ETTEEE
T ss_pred cccccCCCcccHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhc---CCCeEEEee---------eEEEEE
Confidence 0000011234566677777788877653 5678889999999999987521 122222111 278899
Q ss_pred EEeeCCCCCc-cCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecC
Q 010538 402 FNLKRPDGSW-FGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFG 480 (508)
Q Consensus 402 ~~~~~~~~~~-~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~ 480 (508)
+.++...... .+..++.+.|.++||.++++ .+.+||+++
T Consensus 386 i~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----------------------------------------g~~iRis~~ 425 (449)
T 3a8u_X 386 IQIAPRDGDAIVRPFEAGMALWKAGFYVRFG----------------------------------------GDTLQFGPT 425 (449)
T ss_dssp EEECCBTTBSSHHHHHHHHHHHHHTEECEEE----------------------------------------TTEEEECCC
T ss_pred EEEecCcccccccHHHHHHHHHHCCcEEecC----------------------------------------CCEEEEECC
Confidence 9886432110 01124778888889998874 257999999
Q ss_pred CCCCHHHHHHHHHhhhhhhhh
Q 010538 481 YMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 481 ~~~t~eev~~l~~~~~~~~~~ 501 (508)
+.+|.+|+++++++|+++++.
T Consensus 426 ~~~t~~~i~~~l~~l~~~l~~ 446 (449)
T 3a8u_X 426 FNSKPQDLDRLFDAVGEVLNK 446 (449)
T ss_dssp TTCCHHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999988754
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=8.6e-20 Score=191.55 Aligned_cols=328 Identities=12% Similarity=0.080 Sum_probs=217.6
Q ss_pred CCCeeeeCCCC---CC---CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA---TL---YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~---~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..+. .. .+|.+++++.+... .. ......+ ......++++.++++++ .+ +++|++|+
T Consensus 74 ~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~-~~-~~~~~~~-----~~~~~~~l~~~la~~~g--~~--~v~~~~sG 142 (439)
T 2oat_A 74 EGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVD-KL-TLTSRAF-----YNNVLGEYEEYITKLFN--YH--KVLPMNTG 142 (439)
T ss_dssp TCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHT-TC-SCCCTTS-----EESSHHHHHHHHHHHHT--CS--EEEEESSH
T ss_pred CCCEEEEccCCcccccCCCCCHHHHHHHHHHHH-hc-CcccCcc-----CCHHHHHHHHHHHHhcC--CC--EEEEeCCH
Confidence 56789997662 22 67888888766542 21 1111111 12345677888999987 45 79999999
Q ss_pred HHHHHHHHhhcC--------CCCC-CeEEEecccc-cchHHHHHHHH----hcC-----CeEEEEccCCccCcccccccc
Q 010538 113 TAALKLVGEAFP--------WSHQ-SSYMYTMENH-NSVLGIREYAL----SQG-----AAAFAIDVEEAVDNDGLSESL 173 (508)
Q Consensus 113 t~al~~~~~~l~--------~~~g-~~vl~~~~~h-~s~~~~~~~~~----~~G-----~~v~~v~~~~~~~~~~l~~~~ 173 (508)
++|+.+++.++. ..+| +.||+.+..| .++........ +.+ ..+..+|.+
T Consensus 143 seA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~------------ 210 (439)
T 2oat_A 143 VEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYN------------ 210 (439)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECSS------------
T ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCCC------------
Confidence 999999888752 1234 6777776444 44444433210 011 345555542
Q ss_pred ccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCcccc----CHHHHHHHHcCCccccccCCCCCCCeEEEEe
Q 010538 174 VTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRF----NLDLINIMKKNPERILEISPFSKGRWMVLID 249 (508)
Q Consensus 174 ~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~----~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD 249 (508)
|+++++ ++++ ++++++|++..+++++|.+. ++++|.++|++ +|+++|+|
T Consensus 211 --------d~~~le--~~l~-----~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~------------~gillI~D 263 (439)
T 2oat_A 211 --------DLPALE--RALQ-----DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTR------------HQVLFIAD 263 (439)
T ss_dssp --------CHHHHH--HHTT-----STTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHH------------TTCEEEEE
T ss_pred --------CHHHHH--HHhC-----CCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHH------------cCCEEEEe
Confidence 366777 5552 35689999988888899877 68888888887 99999999
Q ss_pred cccc-CCCCC--C--CCCCCCCcEEEEeccccccCCC--cceEEEEechhHhhhccccccCceEEecccchhhhhhccCc
Q 010538 250 AAKG-CVTQP--P--DLSKYPVDFVVMSFYKIFGYPT--GLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGV 322 (508)
Q Consensus 250 ~a~~-~g~~~--~--d~~~~~~D~~~~S~~K~~g~P~--G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~ 322 (508)
++|. +|... . +......|++ |++|+++ +. .+|++++++++++.+.+...+.
T Consensus 264 Ev~~g~g~~g~~~~~~~~~~~~Di~--t~sK~l~-~G~~~~G~v~~~~~~~~~l~~~~~~~------------------- 321 (439)
T 2oat_A 264 EIQTGLARTGRWLAVDYENVRPDIV--LLGKALS-GGLYPVSAVLCDDDIMLTIKPGEHGS------------------- 321 (439)
T ss_dssp CTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGG-TTSSCCEEEEECHHHHTTSCTTSSCC-------------------
T ss_pred ccccCCccCCcchhHHHhCCCCcEE--Eeccccc-CCCCCeEEEEECHHHHhccCCCCccc-------------------
Confidence 9995 33211 1 2222346876 6679888 41 2899999998876655421110
Q ss_pred cccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEE
Q 010538 323 EELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSF 402 (508)
Q Consensus 323 ~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 402 (508)
..+.|....++..++++.+.+. .+.+++.++++++.+.|+++.. +.+..+.+ .+.++++
T Consensus 322 -----t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~----~~~~~~~~---------~g~~~~v 380 (439)
T 2oat_A 322 -----TYGGNPLGCRVAIAALEVLEEE---NLAENADKLGIILRNELMKLPS----DVVTAVRG---------KGLLNAI 380 (439)
T ss_dssp -----SSTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHTTSCT----TTEEEEEE---------ETTEEEE
T ss_pred -----CCCcCHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHhcC----CCcEEEEe---------eeeEEEE
Confidence 1133556666777788877653 5678899999999999987621 22211111 2688888
Q ss_pred EeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC
Q 010538 403 NLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM 482 (508)
Q Consensus 403 ~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 482 (508)
.+++..+ .+..++.+.|.++||.++++. .+.+|+++++.
T Consensus 381 ~l~~~~~--~~~~~l~~~l~~~Gv~v~~~~---------------------------------------~~~iRi~~~~~ 419 (439)
T 2oat_A 381 VIKETKD--WDAWKVCLRLRDNGLLAKPTH---------------------------------------GDIIRFAPPLV 419 (439)
T ss_dssp EECCCSS--CCHHHHHHHHHHTTEECCBSS---------------------------------------SSEEEECCCTT
T ss_pred EEecCcc--HHHHHHHHHHHHCCeEEecCC---------------------------------------CCEEEEECccC
Confidence 8864311 234568888888999987631 57899999999
Q ss_pred CCHHHHHHHHHhhhhhhh
Q 010538 483 STFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 483 ~t~eev~~l~~~~~~~~~ 500 (508)
+|++|++++++.|+++++
T Consensus 420 ~t~e~i~~~l~~l~~~l~ 437 (439)
T 2oat_A 420 IKEDELRESIEIINKTIL 437 (439)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999999988764
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=8e-21 Score=198.75 Aligned_cols=289 Identities=10% Similarity=-0.038 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHcC------CCCCCceEEEcCChHHHHHHHHhhcC-------CCCCCeEEEecccccchHHHHHHHHhcC
Q 010538 86 VRAAREQVLDYFN------ASMKDYKCIFTSGATAALKLVGEAFP-------WSHQSSYMYTMENHNSVLGIREYALSQG 152 (508)
Q Consensus 86 ~~~~r~~la~~~~------~~~~~~~i~~t~g~t~al~~~~~~l~-------~~~g~~vl~~~~~h~s~~~~~~~~~~~G 152 (508)
..++|+.+|++++ ++++ +|++|+|+++++.+++.++. ..+|+.|+++...|+++.... +..|
T Consensus 102 ~~~lr~aia~~~~~~~~~~~~~~--~iv~t~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~---~~~g 176 (427)
T 2hox_A 102 SFELEKTIKELHEVVGNAAAKDR--YIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQT---KYFD 176 (427)
T ss_dssp CHHHHHHHHHHHHHHTCBCCTTC--EEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHH---HHSC
T ss_pred hHHHHHHHHHHHHHhCCcCCCCC--EEEEeCCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHH---HHcC
Confidence 3566777777775 6777 89999999999999999983 578999999987777665444 4457
Q ss_pred CeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCcc
Q 010538 153 AAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPER 232 (508)
Q Consensus 153 ~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~ 232 (508)
.+++... + |++.++ +++ ++++++|++++++||||.+++ + +++
T Consensus 177 ~~~~~~~------~---------------d~~~l~--~~~------~~~~k~v~l~~p~NPtG~~~~-~----~l~---- 218 (427)
T 2hox_A 177 KKGYVWA------G---------------NAANYV--NVS------NPEQYIEMVTSPNNPEGLLRH-A----VIK---- 218 (427)
T ss_dssp BTTEEEE------E---------------EGGGGT--TCS------CGGGEEEEEESSCTTTCCCCC-C----SST----
T ss_pred Ceeeeec------C---------------CHHHHH--Hhh------cCCceEEEEcCCCCCcccccH-H----HHc----
Confidence 7765332 2 466777 444 457899999999999999999 4 223
Q ss_pred ccccCCCCCCCeEEEEeccccCCCCC-CCCCCCCCcEEEEeccccccCCCc--ceEEEEe-chhHhhhccccccCceEEe
Q 010538 233 ILEISPFSKGRWMVLIDAAKGCVTQP-PDLSKYPVDFVVMSFYKIFGYPTG--LGALIMR-NDAAKLLKNTYFSGGTVAA 308 (508)
Q Consensus 233 ~~~~~~~~~~g~~vivD~a~~~g~~~-~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~ 308 (508)
++..++|.++.....+ .++. .+.++++.|+||.+| ++| +|+++++ +++++.+.....
T Consensus 219 ----------~~~~i~d~~~~~~~~s~~~~~-~~~~i~~~S~SK~~g-~~G~RiG~~~~~~~~l~~~l~~~~~------- 279 (427)
T 2hox_A 219 ----------GCKSIYDMVYYWPHYTPIKYK-ADEDILLFTMSKFTG-HSGSRFGWALIKDESVYNNLLNYMT------- 279 (427)
T ss_dssp ----------TCEEEEECTTCSTTTSCCCSC-BCCSEEEEEHHHHTS-CGGGCCEEEEECCHHHHHHHHHHHH-------
T ss_pred ----------CCCEEEeecccCCCCCccccC-CCceEEEEeChhcCC-CCCceEEEEEECCHHHHHHHHHHHH-------
Confidence 3467888776432211 2222 467999999999998 667 8999995 777766654311
Q ss_pred cccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH----------hcChHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 010538 309 SIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN----------SLTVPAICRHIASLGMYVRKVLLSLRHENGA 378 (508)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~----------~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~ 378 (508)
....+++.+. ..++..+++... +..++..+++++++++++.+.|++.+
T Consensus 280 ----------------~~~~~~~~~~-q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~----- 337 (427)
T 2hox_A 280 ----------------KNTEGTPRET-QLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSD----- 337 (427)
T ss_dssp ----------------HHTSSCCHHH-HHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSS-----
T ss_pred ----------------hcCCCCCHHH-HHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCc-----
Confidence 0112233333 333333444311 12245677888999999999998873
Q ss_pred ceEEE--ec-CCC---CCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhh
Q 010538 379 DVCTI--YG-TYT---SEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLS 452 (508)
Q Consensus 379 ~~~~~--~~-~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~ 452 (508)
++.+ +. +.. ......+.+.++++++++ +..++ ..++++++||.+++|..|..
T Consensus 338 -g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~-~~~~~----~~~ll~~~gI~v~pg~~f~~---------------- 395 (427)
T 2hox_A 338 -RFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW-EEDKD----CYQTFQNGRINTQNGVGFEA---------------- 395 (427)
T ss_dssp -SEECCCCCSCEEETTTTEEECCCCSEEEEEECS-GGGCS----HHHHHHHTTEECEEGGGGTS----------------
T ss_pred -CccccccccccccccccccCCCCceEEEEECCC-cHHHH----HHHHHHHCCEEEcCCCccCC----------------
Confidence 5654 22 210 000001227888889865 22221 44456789999999875522
Q ss_pred hhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 453 NIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
.++++|||++. +.++++.+++.|+++++
T Consensus 396 ------------------~~~~~Ris~~~--~~e~l~~~l~~l~~~~~ 423 (427)
T 2hox_A 396 ------------------SSRYVRLSLIK--TQDDFDQLMYYLKDMVK 423 (427)
T ss_dssp ------------------CTTEEEEECSS--CHHHHHHHHHHHHHHHT
T ss_pred ------------------CCCEEEEEecC--CHHHHHHHHHHHHHHHh
Confidence 15789999994 89999999999888764
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-20 Score=197.74 Aligned_cols=350 Identities=11% Similarity=0.061 Sum_probs=217.5
Q ss_pred CCCeeeeCCC------CCCCCHHHH-H-HHHH---HhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC-CCCCCceE
Q 010538 39 NGTVYLDHAG------ATLYSELQM-E-AIFR---DFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN-ASMKDYKC 106 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~-~-a~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~-~~~~~~~i 106 (508)
++..|+|..+ .+..+|.++ + ++.+ .... .. .....+ ......++.+.++++++ .+++ +|
T Consensus 52 ~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~-~~-~~~~~~-----~~~~~~~la~~la~~~~~~~~~--~v 122 (449)
T 2cjg_A 52 TGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAAL-NK-PSNSDV-----YSVAMARFVETFARVLGDPALP--HL 122 (449)
T ss_dssp TCCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHT-CC-CCTTTC-----CCHHHHHHHHHHHHHHCCTTCC--EE
T ss_pred CCcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHh-cC-CCCccc-----CCHHHHHHHHHHHHhcCCCCCC--EE
Confidence 5778999733 234588888 8 7766 4322 11 000111 23446677888999997 5666 89
Q ss_pred EEcCChHHHHHHHHhhcC--CC-----------CCCeEEEecccccc-hHHHHHHH-----HhcCC-----eEEEEccCC
Q 010538 107 IFTSGATAALKLVGEAFP--WS-----------HQSSYMYTMENHNS-VLGIREYA-----LSQGA-----AAFAIDVEE 162 (508)
Q Consensus 107 ~~t~g~t~al~~~~~~l~--~~-----------~g~~vl~~~~~h~s-~~~~~~~~-----~~~G~-----~v~~v~~~~ 162 (508)
+||+|+++|++.++..+. .. +++.||+....|.+ ...+.... .+.+. .+..+|.+.
T Consensus 123 ~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 202 (449)
T 2cjg_A 123 FFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMR 202 (449)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCC
T ss_pred EEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCC
Confidence 999999999999886542 11 27788888754443 33222111 11222 455565533
Q ss_pred ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCC
Q 010538 163 AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISP 238 (508)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~ 238 (508)
.+ .+. ..+ ...-..++++++ +.+++ ..+++++|++..++|++|.+.+ +++|.++|++
T Consensus 203 ~~-~~~-~~~---~~~~~~~~~~le--~~i~~---~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~--------- 263 (449)
T 2cjg_A 203 PG-LDE-PAM---AALEAEALRQAR--AAFET---RPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDE--------- 263 (449)
T ss_dssp TT-CCH-HHH---HHHHHHHHHHHH--HHHHH---STTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHH---------
T ss_pred ch-hhc-ccc---chhhHHHHHHHH--HHHHh---cCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHH---------
Confidence 00 000 000 000001445566 44421 1357899999998999998777 7777777776
Q ss_pred CCCCCeEEEEecccc-CCCCCC--C--CCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccch
Q 010538 239 FSKGRWMVLIDAAKG-CVTQPP--D--LSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADI 313 (508)
Q Consensus 239 ~~~~g~~vivD~a~~-~g~~~~--d--~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~ 313 (508)
+|+++|+|++|+ +|.... . ......|+++ ++|++ | +|++++++++++.+.+.+.+..
T Consensus 264 ---~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~t--~sK~l--~--iG~~~~~~~~~~~l~~~~~~~~--------- 325 (449)
T 2cjg_A 264 ---FDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVA--FGKKT--Q--VCGVMAGRRVDEVADNVFAVPS--------- 325 (449)
T ss_dssp ---TTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEE--ECGGG--S--SEEEEECGGGGGSTTCTTTSTT---------
T ss_pred ---CCcEEEEeccccCCCccCcceeecccCCCceEEE--ecCcc--c--EEEEEECHHHhhhhhhcccCCc---------
Confidence 999999999998 443211 1 1123568775 45988 5 7999999988776554321110
Q ss_pred hhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCce-EEEecCCCCCcc
Q 010538 314 DFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADV-CTIYGTYTSEVS 392 (508)
Q Consensus 314 ~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~-~~~~~~~~~~~~ 392 (508)
. .....+.|...+++..++++.+.+ +.+.+++.++++++++.|+++.. ..+. +..+.+
T Consensus 326 ---------~-~~~t~~~n~~~~~aa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~--~~~~~~~~~~~------ 384 (449)
T 2cjg_A 326 ---------R-LNSTWGGNLTDMVRARRILEVIEA---EGLFERAVQHGKYLRARLDELAA--DFPAVVLDPRG------ 384 (449)
T ss_dssp ---------S-SCCSSSSCHHHHHHHHHHHHHHHH---HTHHHHHHHHHHHHHHHHHHHHH--HSTTTSEEEEE------
T ss_pred ---------c-cccCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHh--hCCCceeeEee------
Confidence 0 001123456667777788887765 45678889999999999876410 0012 322222
Q ss_pred cCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCC
Q 010538 393 YHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPT 472 (508)
Q Consensus 393 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 472 (508)
.+.++.+.+++. .+..++.+.|.++||.++++. .
T Consensus 385 ---~g~~~~~~~~~~----~~~~~~~~~l~~~Gv~v~~~g---------------------------------------~ 418 (449)
T 2cjg_A 385 ---RGLMCAFSLPTT----ADRDELIRQLWQRAVIVLPAG---------------------------------------A 418 (449)
T ss_dssp ---ETTEEEEECSSH----HHHHHHHHHHHHTTEECEEET---------------------------------------T
T ss_pred ---ccEEEEEEECCh----HHHHHHHHHHHHCCeEEecCC---------------------------------------C
Confidence 167888877542 112357777878999988741 4
Q ss_pred ceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 473 GAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 473 ~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
+.+|+++++.+|.+|++++++.|+++++.
T Consensus 419 ~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 447 (449)
T 2cjg_A 419 DTVRFRPPLTVSTAEIDAAIAAVRSALPV 447 (449)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999987653
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-20 Score=194.67 Aligned_cols=360 Identities=9% Similarity=0.016 Sum_probs=220.4
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..++ +..+|.+++++.+... .. ......+ ......++++.++++++.+++ +|+||+|+
T Consensus 41 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~-~~~~~~~-----~~~~~~~l~~~la~~~~~~~~--~v~~~~gg 111 (433)
T 1zod_A 41 DGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAG-KL-DHLFSEM-----LSRPVVDLATRLANITPPGLD--RALLLSTG 111 (433)
T ss_dssp TCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHH-HC-CCCCTTC-----CCHHHHHHHHHHHHHSCTTCC--EEEEESCH
T ss_pred CCCEEEEcccchhccccCCCCHHHHHHHHHHHH-hC-ccccccc-----CCHHHHHHHHHHHHhCCCCcC--EEEEeCch
Confidence 56789998442 2347888888766543 21 1111111 124466778889999998887 89999999
Q ss_pred HHHHHHHHhhcC-CCCCCeEEEeccc-ccchHHHHHHHH--------hcCCeEEEEccCCcc--Cccccccccccccccc
Q 010538 113 TAALKLVGEAFP-WSHQSSYMYTMEN-HNSVLGIREYAL--------SQGAAAFAIDVEEAV--DNDGLSESLVTSTKIS 180 (508)
Q Consensus 113 t~al~~~~~~l~-~~~g~~vl~~~~~-h~s~~~~~~~~~--------~~G~~v~~v~~~~~~--~~~~l~~~~~~~~~~~ 180 (508)
++|+.+++.++. ..+++.|++.... |+.......... .....+..++..... ...+ .....-.
T Consensus 112 ~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----~~~~~~~ 186 (433)
T 1zod_A 112 AESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFER-----NGAYDYL 186 (433)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEE-----TTEECHH
T ss_pred HHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCC-----chhhhHH
Confidence 999999987642 2345677777644 444443332110 001234445442110 0000 0000001
Q ss_pred cchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecccc-CC
Q 010538 181 LLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKG-CV 255 (508)
Q Consensus 181 ~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~-~g 255 (508)
.|+++++ +++++. ..+++++|+++.++|+||.+.+ +++|.++|++ +|+++|+|++|+ +|
T Consensus 187 ~d~~~le--~~l~~~--~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~------------~~~~li~DEv~~~~g 250 (433)
T 1zod_A 187 AELDYAF--DLIDRQ--SSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEA------------RGMLLILDEAQTGVG 250 (433)
T ss_dssp HHHHHHH--HHHHHH--CCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHH------------HTCEEEEECTTTTTT
T ss_pred HHHHHHH--HHHHhc--CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHH------------hCCEEEEeccccCCC
Confidence 1467777 554311 0146788888877899998877 8888888887 999999999998 54
Q ss_pred CCCC----CCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCC
Q 010538 256 TQPP----DLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTA 331 (508)
Q Consensus 256 ~~~~----d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 331 (508)
.... +......|++ |++|.+++.-++|++++++++++.+.+.... . ....+.
T Consensus 251 ~~g~~~~~~~~~~~~di~--s~sK~~~~G~~ig~~~~~~~~~~~~~~~~~~---------------------~-~~t~~~ 306 (433)
T 1zod_A 251 RTGTMFACQRDGVTPDIL--TLSKTLGAGLPLAAIVTSAAIEERAHELGYL---------------------F-YTTHVS 306 (433)
T ss_dssp TTSSSSTHHHHTCCCSEE--EECHHHHTTSSCEEEEECHHHHHHHHHTTCC---------------------C-CCTTTT
T ss_pred cCchHhHHhhcCCCCCEE--EecccccCCCCeeEEEEhHHHHHhhccCCCC---------------------C-CCCCCc
Confidence 3221 1112345665 5669888322389999999887766542000 0 011223
Q ss_pred ChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCC--
Q 010538 332 SFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDG-- 409 (508)
Q Consensus 332 ~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-- 409 (508)
|....++..++++.+.+. .+.++++++++++++.|+++.. ..+.+..+.+ .+.++++.+++...
T Consensus 307 ~~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~l~~l~~--~~~~~~~~~~---------~g~~~~i~~~~~~~~~ 372 (433)
T 1zod_A 307 DPLPAAVGLRVLDVVQRD---GLVARANVMGDRLRRGLLDLME--RFDCIGDVRG---------RGLLLGVEIVKDRRTK 372 (433)
T ss_dssp CHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHH--HCTTEEEEEE---------ETTEEEEEEEEETTTT
T ss_pred CHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHH--hCCCeEEEEE---------EEEEEEEEEecCcccc
Confidence 566667777788877653 4567888888888888876410 0012332222 16788888753110
Q ss_pred --CccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHH
Q 010538 410 --SWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFED 487 (508)
Q Consensus 410 --~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ee 487 (508)
.......+.+.|.++||.+++|..+. .++++||++++.+|.+|
T Consensus 373 ~~~~~~~~~~~~~l~~~Gv~v~~~~~~~-----------------------------------~~~~lRi~~~~~~t~~~ 417 (433)
T 1zod_A 373 EPADGLGAKITRECMNLGLSMNIVQLPG-----------------------------------MGGVFRIAPPLTVSEDE 417 (433)
T ss_dssp EECTTHHHHHHHHHHHTTEECCEECCTT-----------------------------------SCCEEEECCCTTCCHHH
T ss_pred CCChHHHHHHHHHHHHCCCeEeccCCCC-----------------------------------CCCEEEEECCcCCCHHH
Confidence 00123457788888999998864210 14789999999999999
Q ss_pred HHHHHHhhhhhhhh
Q 010538 488 AKVNRCSSFDFVNF 501 (508)
Q Consensus 488 v~~l~~~~~~~~~~ 501 (508)
++++++.|++.++-
T Consensus 418 i~~~l~~l~~~l~~ 431 (433)
T 1zod_A 418 IDLGLSLLGQAIER 431 (433)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887653
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=7.7e-20 Score=191.47 Aligned_cols=350 Identities=13% Similarity=-0.002 Sum_probs=218.2
Q ss_pred CCCeeeeCCCCCC------CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCC-CCceEEEcCC
Q 010538 39 NGTVYLDHAGATL------YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASM-KDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~-~~~~i~~t~g 111 (508)
++.-|+|..++.+ .+|.+++++.+... .. .... ..........+++++++++++... + +++||+|
T Consensus 41 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~-~~~~----~~~~~~~~~~~l~~~la~~~~~~~~~--~v~~~~g 112 (439)
T 3dxv_A 41 NGRELIDLSGAWGAASLGYGHPAIVAAVSAAAA-NP-AGAT----ILSASNAPAVTLAERLLASFPGEGTH--KIWFGHS 112 (439)
T ss_dssp TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHH-SC-SCSC----SSSSEEHHHHHHHHHHHHTTTCTTTE--EEEEESS
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHHHHH-hc-cCcc----ccccCCHHHHHHHHHHHHhCCCCCCC--EEEEeCC
Confidence 5677899877655 68888888766543 22 1111 111134567888999999997665 5 8999999
Q ss_pred hHHHHHHHHhhcC-CCCCCeEEEe-cccccchHHHHHHHHhcC--C---------eEEEEccCCccCccccccccccccc
Q 010538 112 ATAALKLVGEAFP-WSHQSSYMYT-MENHNSVLGIREYALSQG--A---------AAFAIDVEEAVDNDGLSESLVTSTK 178 (508)
Q Consensus 112 ~t~al~~~~~~l~-~~~g~~vl~~-~~~h~s~~~~~~~~~~~G--~---------~v~~v~~~~~~~~~~l~~~~~~~~~ 178 (508)
+++|+..++.++. ..+++.||+. ...|..+........... . .+..+|.+...... .
T Consensus 113 gsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~ 182 (439)
T 3dxv_A 113 GSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDP----------T 182 (439)
T ss_dssp HHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBT----------T
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccc----------c
Confidence 9999999988741 1234455544 455555544332211100 0 11222322110000 0
Q ss_pred cccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecccc-
Q 010538 179 ISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKG- 253 (508)
Q Consensus 179 ~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~- 253 (508)
-..|+++++ +++++ ...+++++|++..+++++|.+.| +++|.++|++ ||+++|+|++|+
T Consensus 183 ~~~d~~~le--~~l~~--~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~------------~~~~li~DE~~~g 246 (439)
T 3dxv_A 183 GDAILTLLT--EKLAA--VPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRA------------HGILVVCDEVKVG 246 (439)
T ss_dssp SHHHHHHHH--HHHHT--SCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHH------------TTCEEEEECTTTC
T ss_pred HHHHHHHHH--HHHHh--cCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHH------------cCCEEEEeccccC
Confidence 001467777 55521 11457899999999999999999 9999999997 999999999996
Q ss_pred CCCC----CCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCcccccc
Q 010538 254 CVTQ----PPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFE 327 (508)
Q Consensus 254 ~g~~----~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (508)
+|.. ..+......|++ |++|.++ + | +|++++++++++.+.+...+ .
T Consensus 247 ~g~~g~~~~~~~~~~~~di~--s~sK~~~-~-G~riG~~~~~~~~~~~~~~~~~~------------------------~ 298 (439)
T 3dxv_A 247 LARSGRLHCFEHEGFVPDIL--VLGKGLG-G-GLPLSAVIAPAEILDCASAFAMQ------------------------T 298 (439)
T ss_dssp TTTTSSSSGGGGTTCCCSEE--EECGGGG-T-TSCCEEEEEEHHHHTSCSSSSCC------------------------T
T ss_pred CCcCchhhHHHhcCCCCCEE--EEcchhc-C-CcceEEEEECHHHHhhhcCCCcC------------------------C
Confidence 3221 112223346776 6679888 5 4 79999999887766543111 0
Q ss_pred CCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCC
Q 010538 328 DGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRP 407 (508)
Q Consensus 328 ~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 407 (508)
.. .+...+++..++++.+.+ +.+.++++++.+++++.|.++.. ..+.+....+. +.++++.+...
T Consensus 299 t~-~~~~~~~aa~aal~~~~~---~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~---------g~~~~~~~~~~ 363 (439)
T 3dxv_A 299 LH-GNPISAAAGLAVLETIDR---DDLPAMAERKGRLLRDGLSELAK--RHPLIGDIRGR---------GLACGMELVCD 363 (439)
T ss_dssp TT-TCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHH--HCTTEEEEEEE---------TTEEEEEEEEE
T ss_pred Cc-ccHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHH--hCCCeEEEEEE---------EEEEEEEEecC
Confidence 11 345556666667776654 44566777777777777765410 00233333221 67888877321
Q ss_pred CC----CccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCC
Q 010538 408 DG----SWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMS 483 (508)
Q Consensus 408 ~~----~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 483 (508)
.. .......+.+.|.++||.++++.. ..+++||++++..
T Consensus 364 ~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------------------------------------~~~~iRi~~~~~~ 406 (439)
T 3dxv_A 364 RQSREPARAETAKLIYRAYQLGLVVYYVGM-------------------------------------NGNVLEFTPPLTI 406 (439)
T ss_dssp TTTTEECHHHHHHHHHHHHHHTEECEEEST-------------------------------------TSCEEEECCCTTC
T ss_pred ccccCCCHHHHHHHHHHHHHCCcEEeecCC-------------------------------------CCCEEEEECCCCC
Confidence 00 001234577888888999987520 1578999999999
Q ss_pred CHHHHHHHHHhhhhhhhhh
Q 010538 484 TFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 484 t~eev~~l~~~~~~~~~~~ 502 (508)
|.+|++++++.|+++++.+
T Consensus 407 t~e~i~~~l~~l~~~l~~~ 425 (439)
T 3dxv_A 407 TETDIHKALDLLDRAFSEL 425 (439)
T ss_dssp CHHHHHHHHHHHHHHHHTG
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887654
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=9.7e-21 Score=197.51 Aligned_cols=293 Identities=14% Similarity=0.055 Sum_probs=197.5
Q ss_pred HHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEE--cCChHHHHHHHHhhcCCCCCCeE
Q 010538 54 ELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIF--TSGATAALKLVGEAFPWSHQSSY 131 (508)
Q Consensus 54 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~--t~g~t~al~~~~~~l~~~~g~~v 131 (508)
+.+++++.+........++.+.+..+.. ..+.+++.+|+++|++.. +++ ++|+++|+.+++.++ .++|++|
T Consensus 46 ~~Vl~A~~~~~~~~~~~~~~~gy~y~~~---~~~~Le~~lA~l~g~e~a---lv~p~~~sGt~Ai~~al~al-l~pGD~V 118 (427)
T 3i16_A 46 LKVLNAFQEERISEAHFTNSSGYGYGDI---GRDSLDAVYARVFNTESA---LVRPHFVNGTHALGAALFGN-LRPGNTM 118 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCCCTTCTTCH---HHHHHHHHHHHHHTCSEE---EEETTCCSHHHHHHHHHHHH-CCTTCEE
T ss_pred HHHHHHHHHhchhHHhcCCCCCCCCCHH---HHHHHHHHHHHHhCCcce---EEeCCCccHHHHHHHHHHHH-hCCCCEE
Confidence 5677777553322222233334433322 267788999999999754 554 788899999999998 6889999
Q ss_pred EEec-ccccchHHHH--------HHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCc
Q 010538 132 MYTM-ENHNSVLGIR--------EYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAY 202 (508)
Q Consensus 132 l~~~-~~h~s~~~~~--------~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t 202 (508)
+++. ..|+++.... ..++..|++++.+|.+.++.+ |+++++ +++++ .++|
T Consensus 119 l~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~---------------D~e~l~--~~l~~----~~~t 177 (427)
T 3i16_A 119 LSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKP---------------NLEEIE--KVLKE----DESI 177 (427)
T ss_dssp EESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSC---------------CHHHHH--HHHHT----CTTE
T ss_pred EEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCc---------------CHHHHH--HHhhC----CCCC
Confidence 9998 7888776555 445667999999998766655 678888 55521 1689
Q ss_pred eEEEEeC----CCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEecccccc
Q 010538 203 NLFAFPS----ECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFG 278 (508)
Q Consensus 203 ~lv~~~~----~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g 278 (508)
++|++++ ++||||.+.|+++|.++|++ ..+|+++++|++|+.+....+....++|++++|+||++|
T Consensus 178 klV~i~~s~~~p~nptg~i~dl~~i~~la~~----------~~~g~~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lg 247 (427)
T 3i16_A 178 TLVHIQRSTGYGWRRALLIEDIKSIVDCVKN----------IRKDIICFVDNCYGEFMDTKEPTDVGADLIAGSLIKNIG 247 (427)
T ss_dssp EEEEEECSCCSSSSCCCCHHHHHHHHHHHHH----------HCTTSEEEEECTTTTTSSSSCGGGGTCSEEEEETTSGGG
T ss_pred EEEEEEcCCCCCCCCcccHHHHHHHHHHHHH----------hCCCCEEEEECCCccccccCCccccCCeEEEecCcccCC
Confidence 9999999 99999999999999999984 016999999999987764444445689999999999999
Q ss_pred C---CCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHH
Q 010538 279 Y---PTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAIC 355 (508)
Q Consensus 279 ~---P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~ 355 (508)
+ |. .|+++.+++++++++......+ -....+ +.+.....+...++. ...+.
T Consensus 248 g~g~~~-gG~i~~~~~li~~l~~~~~~~~-------------------~g~~~~-~~~~~a~~~l~gl~~-----~~~r~ 301 (427)
T 3i16_A 248 GGIAPT-GGYLAGTKDCIEKTSYRLTVPG-------------------IGGECG-STFGVVRSMYQGLFL-----APHIS 301 (427)
T ss_dssp TTTCCS-CEEEEECHHHHHHHHHHHSCTT-------------------TGGGCC-CCTTCHHHHHHHHHH-----HHHHH
T ss_pred CCCCce-EEEEEECHHHHHHHHHhcccCc-------------------cCccCC-ccHHHHHHHHHHHHH-----HHHHH
Confidence 5 33 3999999998887765321100 000111 111112222223333 35667
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCC
Q 010538 356 RHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSG 425 (508)
Q Consensus 356 ~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~g 425 (508)
++..+.+.++.+.|+++ +++++..+.. .++.-+++|.+.+.+ ....+.+.|+...
T Consensus 302 ~~~~~~a~~la~~L~~~-------g~~V~p~~~~----~~~~~i~~i~l~~~~----~~~~f~~~l~~~~ 356 (427)
T 3i16_A 302 MEALKGAILCSRIMELA-------GFEVMPKYDE----KRSDIIQSIKFNDKD----KLIEFCKGIQTGS 356 (427)
T ss_dssp HHHHHHHHHHHHHHHHT-------TCEEESCTTS----CCSSSCEEEECSSHH----HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhC-------CCeecCCCCC----CCccEEEEEEECCHH----HHHHHHHHHhhcC
Confidence 88888999999999987 4566432211 122338888886421 1234666676653
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=6e-20 Score=190.42 Aligned_cols=312 Identities=12% Similarity=0.027 Sum_probs=199.8
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHH-HH-HHhcCCeEEEEc
Q 010538 82 TCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIR-EY-ALSQGAAAFAID 159 (508)
Q Consensus 82 ~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~-~~-~~~~G~~v~~v~ 159 (508)
.....+++++.++++.|.+ .+++++|+++|+.++ .++ .++|++|+++...|++..... .. ++..|++++.++
T Consensus 65 ~~p~~~~l~~~la~l~g~~----~~~~~~sG~~Ai~~~-~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 138 (400)
T 3nmy_A 65 HNPTRFAYERCVAALEGGT----RAFAFASGMAATSTV-MEL-LDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVD 138 (400)
T ss_dssp CCHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHH-HTT-SCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEEC
T ss_pred CCHHHHHHHHHHHHHhCCC----CEEEecCHHHHHHHH-HHH-cCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEEC
Confidence 3455778899999999976 345556669999884 455 578999999998888555443 33 566799999998
Q ss_pred cCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCC
Q 010538 160 VEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPF 239 (508)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~ 239 (508)
.+ |+++++ +++ .++|++|++++++||+|.+.|+++|.++|++
T Consensus 139 ~~--------------------d~~~l~--~~i------~~~~~~v~~e~~~np~G~~~~l~~i~~la~~---------- 180 (400)
T 3nmy_A 139 LT--------------------DPAAFK--AAI------RADTKMVWIETPTNPMLKLVDIAAIAVIARK---------- 180 (400)
T ss_dssp TT--------------------SHHHHH--HHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHH----------
T ss_pred CC--------------------CHHHHH--HHh------ccCCCEEEEECCCCCCCeeecHHHHHHHHHH----------
Confidence 74 256677 444 4678999999999999999999999999998
Q ss_pred CCCCeEEEEeccccCCC--CCCCCCCCCCcEEEEeccccccCCC-cc-e-EEEE-echhHhhhccccccCceEEecccch
Q 010538 240 SKGRWMVLIDAAKGCVT--QPPDLSKYPVDFVVMSFYKIFGYPT-GL-G-ALIM-RNDAAKLLKNTYFSGGTVAASIADI 313 (508)
Q Consensus 240 ~~~g~~vivD~a~~~g~--~~~d~~~~~~D~~~~S~~K~~g~P~-G~-G-~l~~-~~~~~~~l~~~~~g~~~~~~~~~~~ 313 (508)
+|+++|+|++++.+. .|++ .++|+++.|++|++++|. .+ | ++++ ++++.+.+.....
T Consensus 181 --~g~~livDe~~~~~~~~~~~~---~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~------------ 243 (400)
T 3nmy_A 181 --HGLLTVVDNTFASPMLQRPLS---LGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQN------------ 243 (400)
T ss_dssp --TTCEEEEECTTTHHHHCCGGG---GTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHH------------
T ss_pred --cCCEEEEECCCcccccCChhh---cCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHH------------
Confidence 999999999997543 3333 479999999999998663 24 4 3444 4445544433211
Q ss_pred hhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEE-EecCCCCCcc
Q 010538 314 DFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCT-IYGTYTSEVS 392 (508)
Q Consensus 314 ~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~-~~~~~~~~~~ 392 (508)
...++.+....+. ++..+. .+..+.++..+.++++.+.|++.+ .++ +..|.-. ..
T Consensus 244 ------------~~g~~~~~~~a~~---~l~~l~--~l~~r~~~~~~~a~~l~~~L~~~p------~v~~V~~p~l~-~~ 299 (400)
T 3nmy_A 244 ------------SIGGVQGPFDSFL---ALRGLK--TLPLRMRAHCENALALAQWLETHP------AIEKVIYPGLA-SH 299 (400)
T ss_dssp ------------HHCCBCCHHHHHH---HHHHHT--THHHHHHHHHHHHHHHHHHHTTCT------TEEEEECTTST-TS
T ss_pred ------------hcCCCCCHHHHHH---HHHhHh--HHHHHHHHHHHHHHHHHHHHHcCC------CEeEEECCCCC-CC
Confidence 0112222222222 233222 245667777888899999998763 454 3333210 00
Q ss_pred c---------CCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCc---hHHHhhcCCChhhhhhhhhcCCcc
Q 010538 393 Y---------HDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNP---GACAKYLGLSHSDLLSNIEAGHVC 460 (508)
Q Consensus 393 ~---------~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~---~~~~~~~~~~~s~~~~~~~~~~~~ 460 (508)
+ ...+++++|.+++.. . ....+.+.|+..++.++.|..++. +... ....-++....++|.
T Consensus 300 ~~~~~~~~~~~g~G~~~~~~l~~~~-~--~~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~-~~~~~~~~~~~~~gi---- 371 (400)
T 3nmy_A 300 PQHVLAKRQMSGFGGIVSIVLKGGF-D--AAKRFCEKTELFTLAESLGGVESLVNHPAVM-THASIPVARREQLGI---- 371 (400)
T ss_dssp TTHHHHHHHCSSCCSEEEEEETTHH-H--HHHHHHHHCSSSEECSCCCSSSCEEECTTTT-TTTTSCHHHHHHHTC----
T ss_pred cCHHHHHHhCCCCCceEEEEeCCcH-H--HHHHHHHcCCcceEecCCCCCcceeeCcccc-ccccCCHHHHHhcCC----
Confidence 0 013789999996421 0 112345555555666666654432 1100 000001122334443
Q ss_pred CCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhh
Q 010538 461 WDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 461 ~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~ 496 (508)
.++.+|+|++..++++.++.+.++|.
T Consensus 372 ----------~~~liRlsvGle~~~dli~dl~~al~ 397 (400)
T 3nmy_A 372 ----------SDALVRLSVGIEDLGDLRGDLERALV 397 (400)
T ss_dssp ----------CTTEEEEECCSSCHHHHHHHHHHHHC
T ss_pred ----------CcCeEEEEeCcCCHHHHHHHHHHHHh
Confidence 37899999999888888877777664
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.9e-21 Score=198.62 Aligned_cols=308 Identities=12% Similarity=0.081 Sum_probs=206.3
Q ss_pred HHHHHHhhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhcc-ccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCce
Q 010538 27 DQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTN-VYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYK 105 (508)
Q Consensus 27 ~~~r~~~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~ 105 (508)
.+++. +|+.+ +..++.|+ +.+++++.+..... .+.+ ...+..+.. ..+++++.+|+++|++..
T Consensus 29 ~~~~~-~~~~~-~~i~~~n~-------~~Vl~a~~~~~~~~~~~~~-~~gy~Y~~~---g~~~Le~~lA~l~g~e~a--- 92 (427)
T 3hvy_A 29 NDVEK-EFKYY-DEIREYNQ-------LKVLKAFQEERISESHFTN-SSGYGYNDI---GRDSLDRVYANIFNTESA--- 92 (427)
T ss_dssp HHHHH-HHHHH-HHHHHHHH-------HHHHHHHHHTTCCGGGSCC-CCTTCTTCH---HHHHHHHHHHHHHTCSEE---
T ss_pred HHHHH-HHHHH-HHHHHhhH-------HHHHHHHHHHHHHHHhccc-CcCCCCCch---hHHHHHHHHHHHhCCCce---
Confidence 45777 88888 78888886 67888775533221 1222 223332221 267788999999999754
Q ss_pred EEE--cCChHHHHHHHHhhcCCCCCCeEEEec-ccccchHHHH--------HHHHhcCCeEEEEccCCccCccccccccc
Q 010538 106 CIF--TSGATAALKLVGEAFPWSHQSSYMYTM-ENHNSVLGIR--------EYALSQGAAAFAIDVEEAVDNDGLSESLV 174 (508)
Q Consensus 106 i~~--t~g~t~al~~~~~~l~~~~g~~vl~~~-~~h~s~~~~~--------~~~~~~G~~v~~v~~~~~~~~~~l~~~~~ 174 (508)
+++ ++|+++|+.+++.++ .++||+|++.. ..|+++.... ..++..|++++.+|. +++.+
T Consensus 93 lv~p~~~sGt~A~~~al~al-l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~-~~~~~-------- 162 (427)
T 3hvy_A 93 FVRPHFVNGTHAIGAALFGN-LRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDL-KDGKV-------- 162 (427)
T ss_dssp EEETTCCSHHHHHHHHHHHT-CCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCC-BTTBC--------
T ss_pred EEeCCCCcHHHHHHHHHHHh-cCCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEecC-CCCCc--------
Confidence 554 788899999999998 78999999998 7777766444 345567999999998 44545
Q ss_pred cccccccchhhhhcCCCCCCCCCCCCCceEEEEeC----CCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEec
Q 010538 175 TSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPS----ECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDA 250 (508)
Q Consensus 175 ~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~----~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~ 250 (508)
|+++++ +++++ .++|++|++++ ++||||.+.|+++|.++|++ ..+|+++++|+
T Consensus 163 -------d~e~l~--~~i~~----~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~----------~~~g~~livD~ 219 (427)
T 3hvy_A 163 -------DINTVK--EELKK----DDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIRE----------VNENVIVFVDN 219 (427)
T ss_dssp -------CHHHHH--HHHHH----CTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHH----------HCSSSEEEEEC
T ss_pred -------CHHHHH--HHhhC----CCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHH----------hCCCCEEEEEC
Confidence 678888 55421 16899999999 99999999999999999984 01599999999
Q ss_pred cccCCCCCCCCCCCCCcEEEEeccccccC---CCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCcccccc
Q 010538 251 AKGCVTQPPDLSKYPVDFVVMSFYKIFGY---PTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFE 327 (508)
Q Consensus 251 a~~~g~~~~d~~~~~~D~~~~S~~K~~g~---P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (508)
+++.+....+....++|++++|+||++|+ |.| |+++.+++++++++......+ -...
T Consensus 220 a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~G-G~i~~~~~li~~l~~~~~~~~-------------------~g~~ 279 (427)
T 3hvy_A 220 CYGEFVEEKEPTDVGADIIAGSLIKNIGGGIATTG-GYIAGKEEYVTQATFRVTVPG-------------------IGGE 279 (427)
T ss_dssp TTCTTTSSSCGGGGTCSEEEEETTSGGGTTTCCSC-EEEEECHHHHHHHHHHHSCTT-------------------TGGG
T ss_pred CccccccCCCCcccCCeEEEECCcccccccccceE-EEEEECHHHHHHHHHHhhcCC-------------------cccc
Confidence 99887633333456799999999999995 444 999999998887765321100 0011
Q ss_pred CCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCC
Q 010538 328 DGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRP 407 (508)
Q Consensus 328 ~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 407 (508)
.+ +++.....+...++. ...+.++..+.+.++.+.|+++ +++++..+.. .++..+++|.+.+.
T Consensus 280 ~~-~~~~~a~~~~~gl~~-----~~~r~~~~~~~a~~la~~L~~~-------g~~V~p~~~~----~~~~li~~~~l~~~ 342 (427)
T 3hvy_A 280 CG-STFGVMRSLYEGLFM-----APHVTIEAVKGAVFCARIMELA-------GFDVLPKYND----KRTDIIQAIKFNDE 342 (427)
T ss_dssp CC-CCTTCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHT-------TCEEESCTTS----CCSSSEEEEECSSH
T ss_pred cC-CCHHHHHHHHHhHhH-----HHHHHHHHHHHHHHHHHHHHhC-------CCeecCCCCC----CCceEEEEEeCCCH
Confidence 11 111112222233333 2456778888999999999887 4566432211 12234888888532
Q ss_pred CCCccCHHHHHHHHhhC
Q 010538 408 DGSWFGYREVEKLASLS 424 (508)
Q Consensus 408 ~~~~~~~~~l~~~L~~~ 424 (508)
+ ....+.+.|+..
T Consensus 343 ~----~~~~f~~~l~~~ 355 (427)
T 3hvy_A 343 K----KLIDFIKGIQTA 355 (427)
T ss_dssp H----HHHHHHHHHHHT
T ss_pred H----HHHHHHHHhccc
Confidence 1 112355555553
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-19 Score=189.91 Aligned_cols=347 Identities=12% Similarity=0.033 Sum_probs=221.9
Q ss_pred CCC--eeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcC
Q 010538 39 NGT--VYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTS 110 (508)
Q Consensus 39 ~~~--iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~ 110 (508)
++. -|+|..++ +..+|.+++++.+... .........+ ......+++++++++++...+ +|+||+
T Consensus 71 dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~-~~~~~~~~~~-----~~~~~~~L~e~la~~~~~~~~--~v~~~~ 142 (457)
T 3tfu_A 71 DGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLR-VMNHVMFGGL-----THEPAARLAKLLVDITPAGLD--TVFFSD 142 (457)
T ss_dssp TTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHH-HCSCCCSSSE-----ECHHHHHHHHHHHHHSSTTEE--EEEEES
T ss_pred CCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHH-hccCcccccc-----CCHHHHHHHHHHHHhCCCCcC--EEEEeC
Confidence 455 79998653 3358888888766543 2211111111 234567889999999988777 899999
Q ss_pred ChHHHHHHHHhhcCC-------CCCCeEEEecccccc-hHHHHHH----------HHhcCCeEEEEccCCccCccccccc
Q 010538 111 GATAALKLVGEAFPW-------SHQSSYMYTMENHNS-VLGIREY----------ALSQGAAAFAIDVEEAVDNDGLSES 172 (508)
Q Consensus 111 g~t~al~~~~~~l~~-------~~g~~vl~~~~~h~s-~~~~~~~----------~~~~G~~v~~v~~~~~~~~~~l~~~ 172 (508)
|+++|+.+++..+.. .+++.||+....|.. ....... .......+..+|...... .
T Consensus 143 sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~----- 216 (457)
T 3tfu_A 143 SGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDY-D----- 216 (457)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSC-C-----
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCccc-C-----
Confidence 999999998887632 344577776555433 2222111 001112233333321110 0
Q ss_pred cccccccccchhhhhcCCCCCCCCCCCCCceEEEEeC-CCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEE
Q 010538 173 LVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPS-ECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVL 247 (508)
Q Consensus 173 ~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~-~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vi 247 (508)
..|+++++ ++|++. .+++++|++.. ++|++|.+.| +++|.++|++ +|+++|
T Consensus 217 -------~~d~~~le--~~l~~~---~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~------------~gillI 272 (457)
T 3tfu_A 217 -------PAYSAAFE--AQLAQH---AGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRR------------YEVLLI 272 (457)
T ss_dssp -------HHHHHHHH--HHHHHH---GGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHH------------HTCEEE
T ss_pred -------HHHHHHHH--HHHHhC---CCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHH------------cCCEEE
Confidence 01567777 554211 25789999998 9999999997 7888888887 999999
Q ss_pred Eecccc-CCCCCC----CCCCCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccC
Q 010538 248 IDAAKG-CVTQPP----DLSKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQG 321 (508)
Q Consensus 248 vD~a~~-~g~~~~----d~~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~ 321 (508)
+|++|+ +|.... +......|++ |++|.+++. ..+|++++++++.+.+...-.+.
T Consensus 273 ~DEv~~g~gr~G~~~a~~~~~~~pdii--t~sK~l~gG~~~lG~v~~~~~i~~~~~~~~~~~------------------ 332 (457)
T 3tfu_A 273 FDEIATGFGRTGALFAADHAGVSPDIM--CVGKALTGGYLSLAATLCTADVAHTISAGAAGA------------------ 332 (457)
T ss_dssp EECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGTTSSCCEEEEEEHHHHHHHHHSSSCS------------------
T ss_pred EEcCccCCccccchhHhHhcCCCceEE--EEChhhhCCCcceEEEEEcHHHHHHhhccCCCc------------------
Confidence 999987 432211 1112246777 556988742 14899999999887663110000
Q ss_pred ccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEE
Q 010538 322 VEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVS 401 (508)
Q Consensus 322 ~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 401 (508)
.......+.|....++..++++.+.+ +.+.++++++.+++++.|+++.. .+++..+.. .+.+++
T Consensus 333 -~~~~~t~~~n~~a~aaa~aaL~~~~~---~~~~~~~~~~~~~l~~~L~~l~~---~~~v~~vr~---------~G~~~~ 396 (457)
T 3tfu_A 333 -LMHGPTFMANPLACAVSVASVELLLG---QDWRTRITELAAGLTAGLDTARA---LPAVTDVRV---------CGAIGV 396 (457)
T ss_dssp -CCCCCTTTTCHHHHHHHHHHHHHHHT---SCHHHHHHHHHHHHHHHHGGGGG---STTEEEEEE---------CSSCEE
T ss_pred -eeEecCCCcCHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHhc---CCCeeeeec---------CCeEEE
Confidence 00001123455666677778887765 35678888899999999887621 123433322 267888
Q ss_pred EEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCC
Q 010538 402 FNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGY 481 (508)
Q Consensus 402 ~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~ 481 (508)
+.+.+. .+..++.+.|.++||.+++. .+.+|+++.+
T Consensus 397 i~l~~~----~~~~~~~~~l~~~Gv~v~~~----------------------------------------~~~lRi~p~~ 432 (457)
T 3tfu_A 397 IECDRP----VDLAVATPAALDRGVWLRPF----------------------------------------RNLVYAMPPY 432 (457)
T ss_dssp EEESSC----CCHHHHHHHHHHTTEECCCB----------------------------------------TTEEEECCCT
T ss_pred EEECCc----ccHHHHHHHHHHCCeEEEec----------------------------------------CCEEEEECCC
Confidence 888653 23456888898999998762 4689999999
Q ss_pred CCCHHHHHHHHHhhhhhhhhhh
Q 010538 482 MSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 482 ~~t~eev~~l~~~~~~~~~~~~ 503 (508)
..|.||+++++++|+++++.+.
T Consensus 433 ~~t~eei~~~l~~L~~~l~~~~ 454 (457)
T 3tfu_A 433 ICTPAEITQITSAMVEVARLVG 454 (457)
T ss_dssp TCCHHHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999887654
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.84 E-value=7e-19 Score=185.02 Aligned_cols=361 Identities=9% Similarity=0.017 Sum_probs=217.2
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..++ +..+|.+++++.+.+. .. ...... .......+++++++++++.+. +|+||+|+
T Consensus 47 ~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~-~~-~~~~~~-----~~~~~~~~la~~l~~~~~~~~---~v~~~~gg 116 (452)
T 3n5m_A 47 QGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQ-TL-SYFPMS-----QSHEPAIKLAEKLNEWLGGEY---VIFFSNSG 116 (452)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHT-TC-CCCCTT-----SEEHHHHHHHHHHHHHHTSCE---EEEEESSH
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHH-hc-CCcccc-----cCCHHHHHHHHHHHHhCCCCc---eEEEeCch
Confidence 66778998554 3347888888766553 21 111111 124556788899999988654 49999999
Q ss_pred HHHHHHHHhhcCC----C---CCCeEEEecccccchHHHHHHHHhcC------------CeEEEEccCCccCc--ccccc
Q 010538 113 TAALKLVGEAFPW----S---HQSSYMYTMENHNSVLGIREYALSQG------------AAAFAIDVEEAVDN--DGLSE 171 (508)
Q Consensus 113 t~al~~~~~~l~~----~---~g~~vl~~~~~h~s~~~~~~~~~~~G------------~~v~~v~~~~~~~~--~~l~~ 171 (508)
|+|++.++..+.. . +++.|++....|.........+ .| ..+..++....... .+-
T Consensus 117 seA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 192 (452)
T 3n5m_A 117 SEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAA--TGQAQRRYQYEPFASGFLHVTPPDCYRMPGIER-- 192 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHS--CCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTT--
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhc--CCchhhccccCCCCCCCeEeCCCccccCccCCc--
Confidence 9999998888731 3 6778888876665543222211 11 12334443111000 000
Q ss_pred ccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCC-CCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEE
Q 010538 172 SLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSE-CNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMV 246 (508)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~-~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~v 246 (508)
....-..++++++ +++.+ ...+++++|++..+ +| +|.+.| +++|.++|++ ||+++
T Consensus 193 ---~~~~~~~~~~~le--~~l~~--~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~------------~~~ll 252 (452)
T 3n5m_A 193 ---ENIYDVECVKEVD--RVMTW--ELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQK------------HGALL 252 (452)
T ss_dssp ---SCGGGCHHHHHHH--HHHHH--HCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHH------------HTCEE
T ss_pred ---hhhHHHHHHHHHH--HHHHh--cCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHH------------cCCEE
Confidence 0000001256676 44421 11256788999888 89 999997 8888888887 99999
Q ss_pred EEecccc-CCCCC----CCCCCCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhcc
Q 010538 247 LIDAAKG-CVTQP----PDLSKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQ 320 (508)
Q Consensus 247 ivD~a~~-~g~~~----~d~~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~ 320 (508)
|+|++|+ +|... .+......|+++ ++|.+++. ..+|++++++++++.+.+......
T Consensus 253 I~DEv~~g~g~~g~~~~~~~~~~~~di~t--~sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~---------------- 314 (452)
T 3n5m_A 253 ISDEVICGFGRTGKAFGFMNYDVKPDIIT--MAKGITSAYLPLSATAVKREIYEAFKGKGEYEF---------------- 314 (452)
T ss_dssp EEECTTTTTTTTSSSSGGGGTTCCCSEEE--ECGGGGTTSSCCEEEEEEHHHHGGGCSSSTTCS----------------
T ss_pred EEecchhCCCcccccchhhhcCCCCCEEe--ecccccCCCcceEEEEECHHHHHHHhhccCCCC----------------
Confidence 9999987 43221 122223467765 45977732 347999999998877643100000
Q ss_pred CccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceE
Q 010538 321 GVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMV 400 (508)
Q Consensus 321 ~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 400 (508)
.......+.|..++++..++++.+.+ +.+.++++++.+++++.|+++.. ..+.+..+.+. +.++
T Consensus 315 --~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~~---------g~~~ 378 (452)
T 3n5m_A 315 --FRHINTFGGNPAACALALKNLEIIEN---ENLIERSAQMGSLLLEQLKEEIG--EHPLVGDIRGK---------GLLV 378 (452)
T ss_dssp --CCCCCSSTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHT--TCTTEEEEEES---------SSCE
T ss_pred --ccccCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHh--cCCCeEEEEEE---------EEEE
Confidence 00001122355566666677887654 34556667777777777655310 01234333222 5677
Q ss_pred EEEeeCC-CCC-ccC---HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceE
Q 010538 401 SFNLKRP-DGS-WFG---YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAI 475 (508)
Q Consensus 401 ~~~~~~~-~~~-~~~---~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i 475 (508)
++.+... ... .++ ...+.+.|.++||.++++..+..+ .++.+
T Consensus 379 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~---------------------------------~~~~i 425 (452)
T 3n5m_A 379 GIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTAG---------------------------------YNNIL 425 (452)
T ss_dssp EEEEEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSSTT---------------------------------CCCEE
T ss_pred EEEEecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCcccCC---------------------------------CCCEE
Confidence 7776421 111 011 134778888999999987654321 25889
Q ss_pred EEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 476 RVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 476 Ris~~~~~t~eev~~l~~~~~~~~~ 500 (508)
||++++.+|.+|++++++.|+++++
T Consensus 426 Ri~~~~~~t~e~i~~~l~~l~~~l~ 450 (452)
T 3n5m_A 426 TLAPPLVISSEEIAFVIGTLKTAME 450 (452)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988764
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=9.1e-19 Score=184.76 Aligned_cols=365 Identities=11% Similarity=-0.005 Sum_probs=216.1
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+. +..+|.+++++.+.........+...+ ......++.++++++++.+.+ +|+||+|+
T Consensus 49 ~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~-----~~~~~~~la~~l~~~~~~~~~--~v~~~~gG 121 (460)
T 3gju_A 49 NGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGH-----GTEASITLAKMIIDRAPKGMS--RVYFGLSG 121 (460)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCCCCTTC-----CCHHHHHHHHHHHHHSCTTEE--EEEEESSH
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcccccccccc-----CCHHHHHHHHHHHhhCCCCcC--EEEEeCch
Confidence 56778997643 344788888876654321111111111 234567788999999888777 89999999
Q ss_pred HHHHHHHHhhcCC-------CCCCeEEEecccccchHHHHHHHH----------hcCCeEEEEccCCccCcc--cccccc
Q 010538 113 TAALKLVGEAFPW-------SHQSSYMYTMENHNSVLGIREYAL----------SQGAAAFAIDVEEAVDND--GLSESL 173 (508)
Q Consensus 113 t~al~~~~~~l~~-------~~g~~vl~~~~~h~s~~~~~~~~~----------~~G~~v~~v~~~~~~~~~--~l~~~~ 173 (508)
++|+..++.++.. .+++.|++....|.........+. .....+..+|.......+ ..
T Consensus 122 seA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---- 197 (460)
T 3gju_A 122 SDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSM---- 197 (460)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTC----
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCcccc----
Confidence 9999999887732 356788877666654433322220 011234455532110000 00
Q ss_pred ccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEe
Q 010538 174 VTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLID 249 (508)
Q Consensus 174 ~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD 249 (508)
........++++++ +++.+. ..+++++|++..+++++|.+.+ +++|.++|++ ||+++|+|
T Consensus 198 ~~~~~~~~~~~~le--~~i~~~--~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~------------~~~llI~D 261 (460)
T 3gju_A 198 SEEQFSQHCADKLE--EMILAE--GPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKK------------YDVLLVAD 261 (460)
T ss_dssp CHHHHHHHHHHHHH--HHHHHH--CGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHH------------TTCEEEEE
T ss_pred ChhHHHHHHHHHHH--HHHHhc--CCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHH------------cCCEEEEe
Confidence 00000001145666 444210 1246789999999999999777 7788888887 99999999
Q ss_pred cccc-CCCCC--C--CCCCCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCcc
Q 010538 250 AAKG-CVTQP--P--DLSKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 250 ~a~~-~g~~~--~--d~~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
++|+ +|... . +......|++++ +|.+++. -.+|++++++++++.+......+.. .
T Consensus 262 Ev~~g~gr~g~~~~~~~~~~~pdi~t~--sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~-----------------~ 322 (460)
T 3gju_A 262 EVVTGFGRLGTMFGSDHYGIKPDLITI--AKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGS-----------------L 322 (460)
T ss_dssp CTTTTTTTTSSSCHHHHHTCCCSEEEE--CGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCS-----------------C
T ss_pred ccccCCCcccccchHhhcCCCCCeeee--ehhhcCCCCCeEEEEECHHHHHHHhcccccccc-----------------c
Confidence 9987 44322 1 111224677755 4988842 1379999999988776421000000 0
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEE
Q 010538 324 ELFEDGTASFLSIASIRHGFNLINSLT-VPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSF 402 (508)
Q Consensus 324 ~~~~~gt~~~~~~~~l~~al~~~~~~g-~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 402 (508)
......+.|....++..++++.+.+.. ++.+++....+++.|.+.+.+. +.+..+.+. +.++.+
T Consensus 323 ~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~------~~~~~~~~~---------g~~~~~ 387 (460)
T 3gju_A 323 GHGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGH------KNVGEVRGD---------GMLAAV 387 (460)
T ss_dssp SCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTS------TTEEEEEEE---------TTEEEE
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC------CCeEEEeee---------eEEEEE
Confidence 000112345556666677888765532 2344444444444444444444 234443322 678888
Q ss_pred EeeCCCCCc--c-----CHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceE
Q 010538 403 NLKRPDGSW--F-----GYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAI 475 (508)
Q Consensus 403 ~~~~~~~~~--~-----~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i 475 (508)
.+....... + ....+.+.|.++||.++++. ..+.+
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------------------------------------~~~~i 429 (460)
T 3gju_A 388 EFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMP--------------------------------------QGDIL 429 (460)
T ss_dssp EECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECS--------------------------------------SSCEE
T ss_pred EEccCccccccccchHHHHHHHHHHHHHCCeEEecCC--------------------------------------CCCEE
Confidence 775421110 0 02357788888999988742 14789
Q ss_pred EEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 476 RVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 476 Ris~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
||++++..|.+|+++++++|+++++.+
T Consensus 430 Ri~~~~~~t~e~i~~~l~~l~~~l~~~ 456 (460)
T 3gju_A 430 GFAPPLCLTREQADIVVSKTADAVKSV 456 (460)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887653
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-20 Score=195.41 Aligned_cols=291 Identities=14% Similarity=0.043 Sum_probs=184.7
Q ss_pred HHHHHHHHHHHc-CCC-----CCCceEE--EcCChHHHHHHHH---hhcCCCCCCeEEEecccccchHHHHHHHHhcCCe
Q 010538 86 VRAAREQVLDYF-NAS-----MKDYKCI--FTSGATAALKLVG---EAFPWSHQSSYMYTMENHNSVLGIREYALSQGAA 154 (508)
Q Consensus 86 ~~~~r~~la~~~-~~~-----~~~~~i~--~t~g~t~al~~~~---~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~ 154 (508)
..++|+.+++++ +.. ++ +|. .|.+++.++.++. .++ .++|+.|+++...|+++... ++..|.+
T Consensus 81 ~~~lr~~ia~~~~~~~~~~~~~~--~i~~~~~~~g~ga~~~~~~~~~~~-~~~gd~Vlv~~p~y~~~~~~---~~~~g~~ 154 (409)
T 4eu1_A 81 IASFVEEAQKLCFGPTCAALRDG--RIASCQTLGGTGALRIGGDLLNRF-VANCNRIYGPDVGYPNHESI---FAKAGME 154 (409)
T ss_dssp CHHHHHHHHHHHHCSSCHHHHTT--CEEEEEESHHHHHHHHHHHHGGGT-SSSCCEEEEESSCCTHHHHH---HHHTTCE
T ss_pred cHHHHHHHHHHHcCCCchhhccC--ceeeeecccchHHHHHHHHHHHHh-cCCCCEEEEeCCCcHhHHHH---HHHcCCe
Confidence 356788888875 655 55 674 4899999988754 334 57889999998777766544 4456999
Q ss_pred EEEEccCC--ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCcc
Q 010538 155 AFAIDVEE--AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPER 232 (508)
Q Consensus 155 v~~v~~~~--~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~ 232 (508)
++.+|++. +..+ |+++++ +++++. .+.++++++++++||||.+++.+++.++++
T Consensus 155 ~~~~~~~~~~~~~~---------------d~~~l~--~~l~~~---~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~---- 210 (409)
T 4eu1_A 155 LTPYSYYDPATKGL---------------NLAGML--ECLDKA---PEGSVILVHACAHNPTGVDPTHDDWRQVCD---- 210 (409)
T ss_dssp EEEECCEETTTTEE---------------CHHHHH--HHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHH----
T ss_pred EEEEEeecCcCCcC---------------cHHHHH--HHHHhC---CCCcEEEEECCCCCCCCCCCCHHHHHHHHH----
Confidence 99999842 2233 577777 555321 235678888999999999999887555544
Q ss_pred ccccCCCCCCCeEEEEeccccCCC-CC-----CC---C-CCCCCcEEEEeccccccCCCc--ceEE--EEe-ch----hH
Q 010538 233 ILEISPFSKGRWMVLIDAAKGCVT-QP-----PD---L-SKYPVDFVVMSFYKIFGYPTG--LGAL--IMR-ND----AA 293 (508)
Q Consensus 233 ~~~~~~~~~~g~~vivD~a~~~g~-~~-----~d---~-~~~~~D~~~~S~~K~~g~P~G--~G~l--~~~-~~----~~ 293 (508)
+|+++|+++|+|++++... .+ .. + ...+..+++.|++|.+| ++| +|++ ++. ++ ++
T Consensus 211 -----~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~G~riG~~~~v~~~~~~~~~l~ 284 (409)
T 4eu1_A 211 -----VIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFG-LYGHRCGALHISTASAEEAKRLV 284 (409)
T ss_dssp -----HHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSS-CGGGCCEEEEEECSSHHHHHHHH
T ss_pred -----HHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCccccc-CccCCceEEEEEeCCHHHHHHHH
Confidence 3445999999999976432 11 11 1 11233478899999998 557 7987 554 44 33
Q ss_pred hhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH-----hcChHHHHHHHHHHHHHHHHH
Q 010538 294 KLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN-----SLTVPAICRHIASLGMYVRKV 368 (508)
Q Consensus 294 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~-----~~g~~~i~~~~~~l~~~l~~~ 368 (508)
+.+.... +....+++.....++..+++... ...++.+++++.++++++.+.
T Consensus 285 ~~~~~~~------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (409)
T 4eu1_A 285 SQLALLI------------------------RPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSE 340 (409)
T ss_dssp HHHHHHH------------------------HHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH------------------------hhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222210 01112333444445554554210 112678889999999999999
Q ss_pred HhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChh
Q 010538 369 LLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHS 448 (508)
Q Consensus 369 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s 448 (508)
|+++.. +..+++..+.. +.+++..+ +...+.++++++||.+.+|
T Consensus 341 L~~~g~---~~~~~~~~~~~--------~~~~~~~~--------~~~~~~~ll~~~gv~v~p~----------------- 384 (409)
T 4eu1_A 341 LKACGS---VHDWSHIERQV--------GMMAYTGL--------TREQVELLRSEYHIYMTLN----------------- 384 (409)
T ss_dssp HHHTTC---CSCCHHHHHSC--------SSEEECCC--------CHHHHHHHHHHHCEECCTT-----------------
T ss_pred HHhcCC---CCCcceecCCc--------eEEEEeCC--------CHHHHHHHHHcCCEEEcCC-----------------
Confidence 988620 01144444432 44444322 1223556667789998652
Q ss_pred hhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 449 DLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
.||+++.. |.+|+++++++|++++
T Consensus 385 --------------------------~Ri~~~~~-~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 385 --------------------------GRAAVSGL-NSTNVEYVSQAIHNVT 408 (409)
T ss_dssp --------------------------CEEEGGGC-CTTTHHHHHHHHHHHH
T ss_pred --------------------------CEEEEEec-CHhhHHHHHHHHHHHh
Confidence 38888755 4566999999998765
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-19 Score=199.25 Aligned_cols=323 Identities=15% Similarity=0.083 Sum_probs=216.7
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE 162 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~ 162 (508)
...+.++++.+|+++|++.. +++++|++.|+..++.++ .++||.|+++...|.|+...+. ..|++++.++.+.
T Consensus 194 ~g~i~eaE~~lA~~fGa~~a---~~v~nGts~An~~ai~al-~~pGD~VLv~r~~H~S~~~~l~---lsGa~pv~v~~~~ 266 (715)
T 3n75_A 194 SGPHKEAEQYIARVFNADRS---YMVTNGTSTANKIVGMYS-APAGSTILIDRNCHKSLTHLMM---MSDVTPIYFRPTR 266 (715)
T ss_dssp BTHHHHHHHHHHHHHTCSEE---EEESSHHHHHHHHHHHHH-CCTTCEEEEESSCCHHHHHHHH---HSCCEEEEECCCB
T ss_pred cHHHHHHHHHHHHHhCCCCc---eEECcHHHHHHHHHHHHh-CCCCCEEEECCCccHHHHHHHH---HcCCEEEEEeccc
Confidence 34578899999999999753 777888889999999998 7899999999999999887644 4699999998753
Q ss_pred cc-CccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCC
Q 010538 163 AV-DNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK 241 (508)
Q Consensus 163 ~~-~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~ 241 (508)
+. .+.. ....-..|+++++ +++.++ ...+.+++++++++ |++|.+.|+++|.++|++
T Consensus 267 ~~~gi~~------~i~~~~~d~e~Le--~~l~~~-~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~------------ 324 (715)
T 3n75_A 267 NAYGILG------GIPQSEFQHATIA--KRVKET-PNATWPVHAVITNS-TYDGLLYNTDFIKKTLDV------------ 324 (715)
T ss_dssp CTTCCBC------CCCGGGGSHHHHH--HHHHHS-TTCCSCSEEEEESS-CTTSEEECHHHHHHHCCC------------
T ss_pred ccccccc------CcccccCCHHHHH--HHHhhC-cCccCceEEEEECC-CCCCccCCHHHHHHHhCc------------
Confidence 21 1100 0000011577777 665421 11112348888988 999999999999999986
Q ss_pred CCeEEEEeccccCCC--CC----CC-CCC-CCCcEE---EEeccccccCCCcceEEEEechhHh-hhccccccCceEEec
Q 010538 242 GRWMVLIDAAKGCVT--QP----PD-LSK-YPVDFV---VMSFYKIFGYPTGLGALIMRNDAAK-LLKNTYFSGGTVAAS 309 (508)
Q Consensus 242 ~g~~vivD~a~~~g~--~~----~d-~~~-~~~D~~---~~S~~K~~g~P~G~G~l~~~~~~~~-~l~~~~~g~~~~~~~ 309 (508)
++ +++|++|+.+. .+ .+ +.. .++|++ +.|+||++++|++.|+++++++... .+...
T Consensus 325 ~~--livDEAH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~~~~~~---------- 392 (715)
T 3n75_A 325 KS--IHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEA---------- 392 (715)
T ss_dssp SE--EEEECTTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHHHHHHH----------
T ss_pred Cc--EEEccccccccccCCccccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCchhhHHHHHHH----------
Confidence 54 79999998653 11 11 111 125765 9999999998877899999876211 11111
Q ss_pred ccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCce--EEEecCC
Q 010538 310 IADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADV--CTIYGTY 387 (508)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~--~~~~~~~ 387 (508)
...+.+++++++.++++.+|++++....-.++.+++.++++++++.|+++++. .++ ++++++.
T Consensus 393 -------------~~~~~STSpsy~~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~--~~~~~~~~~~~~ 457 (715)
T 3n75_A 393 -------------YMMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTE--SDGWFFDVWQPD 457 (715)
T ss_dssp -------------HHHTSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SSSCCCEESSCS
T ss_pred -------------HHhhcCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhh--cccceeeccCcc
Confidence 22345678999999999999998864223567899999999999999887310 001 4555443
Q ss_pred CCCc------cc--C-------------CCCceEEEEeeCCC--C----CccCHHHHHHHHhhCCCeeccCCCCCchHHH
Q 010538 388 TSEV------SY--H-------------DTGSMVSFNLKRPD--G----SWFGYREVEKLASLSGIQLRTGCFCNPGACA 440 (508)
Q Consensus 388 ~~~~------~~--~-------------~~~~~v~~~~~~~~--~----~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~ 440 (508)
.... .+ . --..=+++..++.+ + ..+....+.+.|+++||.+--.
T Consensus 458 ~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~--------- 528 (715)
T 3n75_A 458 HIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKT--------- 528 (715)
T ss_dssp CCCSCSCEECCTTCCTTCCTTCCSSSEEECTTEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEE---------
T ss_pred cccchhhhccCcccccccccccccCcccCCCeEEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEec---------
Confidence 1000 00 0 00112344444321 1 1244556888998889986432
Q ss_pred hhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 441 KYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 441 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
....|=+-++..+|.+++++|+++|.+|-+
T Consensus 529 ------------------------------d~~~vl~l~s~g~~~~~~~~L~~aL~~~~~ 558 (715)
T 3n75_A 529 ------------------------------GPYNLLFLFSIGIDKTKALSLLRALTDFKR 558 (715)
T ss_dssp ------------------------------ETTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred ------------------------------CCCcEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 145677778888999999999999998764
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.7e-19 Score=184.47 Aligned_cols=353 Identities=10% Similarity=-0.008 Sum_probs=215.4
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..++ +..+|.+++++.+.+.......+...+ ......++.++++++++.+.+ +|+||+|+
T Consensus 48 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~-----~~~~~~~la~~l~~~~~~~~~--~v~~~~gg 120 (459)
T 4a6r_A 48 EGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKT-----THPAVVELSSLLAEVTPAGFD--RVFYTNSG 120 (459)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTTSSS-----CCHHHHHHHHHHHHHSCTTCC--EEEEESSH
T ss_pred CCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhcccccccccc-----CCHHHHHHHHHHHHhCCCCCC--EEEEeCch
Confidence 66789998653 334788988887655321111111111 234567888999999998888 89999999
Q ss_pred HHHHHHHHhhcCC-------CCCCeEEEecccccchHHHHHHHHh----------cCCeEEEEccCCc---cC-cccccc
Q 010538 113 TAALKLVGEAFPW-------SHQSSYMYTMENHNSVLGIREYALS----------QGAAAFAIDVEEA---VD-NDGLSE 171 (508)
Q Consensus 113 t~al~~~~~~l~~-------~~g~~vl~~~~~h~s~~~~~~~~~~----------~G~~v~~v~~~~~---~~-~~~l~~ 171 (508)
++|+..++..+.. .+++.||+....|.+.......+.. ....+..++.... .. .+.
T Consensus 121 seA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~--- 197 (459)
T 4a6r_A 121 SESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTP--- 197 (459)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTTCCH---
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcccCH---
Confidence 9999999888742 2567888877666654433322210 0113334442110 00 000
Q ss_pred ccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEE
Q 010538 172 SLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVL 247 (508)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vi 247 (508)
......++++++ +.+.+. ..+++++|++..+++++|.+.+ +++|.++|++ +|+++|
T Consensus 198 ----~~~~~~~~~~le--~~i~~~--~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~------------~~~llI 257 (459)
T 4a6r_A 198 ----DEFGVVAARWLE--EKILEI--GADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRK------------YDVLLV 257 (459)
T ss_dssp ----HHHHHHHHHHHH--HHHHHH--CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHH------------TTCEEE
T ss_pred ----HHHHHHHHHHHH--HHHHHc--CCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHH------------cCCEEE
Confidence 000001145666 444210 1146788888888888899887 8888888887 999999
Q ss_pred Eecccc-CCCCC--C--CCCCCCCcEEEEeccccccCC-CcceEEEEechhHhhhcc---ccccCceEEecccchhhhhh
Q 010538 248 IDAAKG-CVTQP--P--DLSKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKN---TYFSGGTVAASIADIDFVKR 318 (508)
Q Consensus 248 vD~a~~-~g~~~--~--d~~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~---~~~g~~~~~~~~~~~~~~~~ 318 (508)
+|++|+ +|... . +......|++++| |.+++. -.+|++++++++++.+.. ...+.
T Consensus 258 ~DEv~~g~gr~G~~~~~~~~~~~pdi~t~s--K~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~--------------- 320 (459)
T 4a6r_A 258 ADEVICGFGRTGEWFGHQHFGFQPDLFTAA--KGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGF--------------- 320 (459)
T ss_dssp EECTTTTTTTTSSSSHHHHHTCCCSEEEEC--GGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHH---------------
T ss_pred EeccccCCCcccccchHhhcCCCCCeeehh--hhhcCCCCCccceeeCHHHHHHhhcCCCcccCC---------------
Confidence 999987 43322 1 1112246777655 987733 248999999998776652 11110
Q ss_pred ccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHH-HHHHHHHHHH-hcccCCCCCceEEEecCCCCCcccCCC
Q 010538 319 RQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIA-SLGMYVRKVL-LSLRHENGADVCTIYGTYTSEVSYHDT 396 (508)
Q Consensus 319 ~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~-~l~~~l~~~L-~~l~~~~~~~~~~~~~~~~~~~~~~~~ 396 (508)
..+.|....++..++++.+.+. .+.++++ ++.+++++.| +.+.. .+.+..+.+.
T Consensus 321 ---------t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~~~~~--------- 376 (459)
T 4a6r_A 321 ---------TYSGHPVCAAVAHANVAALRDE---GIVQRVKDDIGPYMQKRWRETFSR---FEHVDDVRGV--------- 376 (459)
T ss_dssp ---------HHCSCHHHHHHHHHHHHHHHHT---CHHHHHHHTHHHHHHHHHHHHHTT---CTTEEEEEEE---------
T ss_pred ---------CCCCCHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHhc---CCCeEEEEEE---------
Confidence 1123455566666678876543 3344555 5555555555 33210 1234444322
Q ss_pred CceEEEEeeCCCCCc--c-----CHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCC
Q 010538 397 GSMVSFNLKRPDGSW--F-----GYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHG 469 (508)
Q Consensus 397 ~~~v~~~~~~~~~~~--~-----~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 469 (508)
+.++.+.+....... + ....+.+.|.++||.++++
T Consensus 377 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-------------------------------------- 418 (459)
T 4a6r_A 377 GMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRAC-------------------------------------- 418 (459)
T ss_dssp TTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEE--------------------------------------
T ss_pred EEEEEEEEecCccccccccchHHHHHHHHHHHHHCCeEEecC--------------------------------------
Confidence 678888775421110 0 0345778888899998873
Q ss_pred CCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 470 KPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 470 ~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
.+++||++++..|.+|+++++++|++.++-+
T Consensus 419 --g~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 449 (459)
T 4a6r_A 419 --GDHIVSAPPLVMTRAEVDEMLAVAERCLEEF 449 (459)
T ss_dssp --TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred --CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 2689999999999999999999999887654
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-18 Score=181.43 Aligned_cols=364 Identities=12% Similarity=-0.011 Sum_probs=212.6
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..+ .+..+|.+++++.+.........+. .+ ......++.++++++++...+ +|+||+|+
T Consensus 42 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~-~~-----~~~~~~~la~~l~~~~~~~~~--~v~~~~sG 113 (448)
T 3dod_A 42 NGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLL-GM-----TNVPATQLAETLIDISPKKLT--RVFYSDSG 113 (448)
T ss_dssp TSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCCCS-SS-----EEHHHHHHHHHHHHHSCTTEE--EEEEESSH
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCcccc-cc-----CCHHHHHHHHHHHHhCCCCCC--EEEEeCch
Confidence 6678999865 2334788888876654321111111 11 234567788999999987767 89999999
Q ss_pred HHHHHHHHhhcCC----CC---CCeEEEecccccchHHHHHHHHh----------cCCeEEEEccCCccCcccccccccc
Q 010538 113 TAALKLVGEAFPW----SH---QSSYMYTMENHNSVLGIREYALS----------QGAAAFAIDVEEAVDNDGLSESLVT 175 (508)
Q Consensus 113 t~al~~~~~~l~~----~~---g~~vl~~~~~h~s~~~~~~~~~~----------~G~~v~~v~~~~~~~~~~l~~~~~~ 175 (508)
++|+..++..+.. .+ ++.|++....|.+.......+.. ....+..+|.......... ..
T Consensus 114 seA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 189 (448)
T 3dod_A 114 AEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESG----DP 189 (448)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCCCCTTSSSC----CH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCccccCCcc----ch
Confidence 9999999887732 22 48888887665443221111100 0112333443221110000 00
Q ss_pred ccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCC-CCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEec
Q 010538 176 STKISLLPIQRRKGASFPERDPAGDAYNLFAFPSEC-NFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDA 250 (508)
Q Consensus 176 ~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~-n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~ 250 (508)
...-..|+++++ ++|.+ ..+++++|++..++ +++|.+.+ +++|.++|++ ||+++|+|+
T Consensus 190 ~~~~~~d~~~le--~~l~~---~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~------------~~~~lI~DE 252 (448)
T 3dod_A 190 DECRDQCLRELA--QLLEE---HHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTT------------YDVLMIVDE 252 (448)
T ss_dssp HHHHHHHHHHHH--HHHHH---HGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHH------------TTCEEEEEC
T ss_pred hhhhHHHHHHHH--HHHHh---CCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHH------------hCCEEEEec
Confidence 000001356666 44421 12467888888888 99998887 8888888887 999999999
Q ss_pred ccc-CCCCC----CCCCCCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccc
Q 010538 251 AKG-CVTQP----PDLSKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEE 324 (508)
Q Consensus 251 a~~-~g~~~----~d~~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 324 (508)
+|+ +|... .+......|++++ +|.+++. ..+|++++++++++.+.+....... ..
T Consensus 253 v~~g~g~~g~~~a~~~~~~~~di~t~--sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~-----------------~~ 313 (448)
T 3dod_A 253 VATGFGRTGKMFACEHENVQPDLMAA--GKGITGGYLPIAVTFATEDIYKAFYDDYENLKT-----------------FF 313 (448)
T ss_dssp TTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCC-----------------CC
T ss_pred cccCCCcccchhhhhhcCCCCCEEEe--cccccCCcCceEEEEECHHHHHHhhhccccCCc-----------------cc
Confidence 987 43221 1122224576655 5988732 1479999999988776651100000 00
Q ss_pred cccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEe
Q 010538 325 LFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNL 404 (508)
Q Consensus 325 ~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 404 (508)
.....+.+...+++..++++.+.+ +.+.++++++.+++++.|.++.. .+.+....+ .+.++++.+
T Consensus 314 ~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~~---------~g~~~~~~~ 378 (448)
T 3dod_A 314 HGHSYTGNQLGCAVALENLALFES---ENIVEQVAEKSKKLHFLLQDLHA---LPHVGDIRQ---------LGFMCGAEL 378 (448)
T ss_dssp CCCTTTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHTT---STTEEEEEE---------ETTEEEEEE
T ss_pred ccCCCCcCHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHHhc---CCCeEEEEe---------eeEEEEEEE
Confidence 001123355566666778887654 34556666666666666654210 122332221 167888887
Q ss_pred eCCCCCc--cC-----HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEE
Q 010538 405 KRPDGSW--FG-----YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRV 477 (508)
Q Consensus 405 ~~~~~~~--~~-----~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRi 477 (508)
....... +. ...+.+.|.++||.++++ .+.+|+
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~----------------------------------------~~~iRi 418 (448)
T 3dod_A 379 VRSKETKEPYPADRRIGYKVSLKMRELGMLTRPL----------------------------------------GDVIAF 418 (448)
T ss_dssp CSBTTTTBCCCGGGCHHHHHHHHHHHTTEECCEE----------------------------------------TTEEEE
T ss_pred ccCcccccccchhhHHHHHHHHHHHHCCcEEecc----------------------------------------CCEEEE
Confidence 6421110 00 235778888899998763 368999
Q ss_pred ecCCCCCHHHHHHHHHhhhhhhhhhhhc
Q 010538 478 SFGYMSTFEDAKVNRCSSFDFVNFSQFL 505 (508)
Q Consensus 478 s~~~~~t~eev~~l~~~~~~~~~~~~~~ 505 (508)
++++..|.+|++++++.|+++++.+..+
T Consensus 419 ~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 446 (448)
T 3dod_A 419 LPPLASTAEELSEMVAIMKQAIHEVTSL 446 (448)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998776554
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.82 E-value=6.5e-19 Score=184.15 Aligned_cols=353 Identities=12% Similarity=0.022 Sum_probs=208.8
Q ss_pred CCCeeeeCCCCC------CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGAT------LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|+.++. ..+|.+++++.+.... .. .. .++ .....+++++++++++ .++ +|+||+|+
T Consensus 53 ~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~-~~--~~-~~~-----~~~~~~l~~~la~~~~-~~~--~v~~~~sG 120 (434)
T 3l44_A 53 DGNKYIDYLAAYGPIITGHAHPHITKAITTAAEN-GV--LY-GTP-----TALEVKFAKMLKEAMP-ALD--KVRFVNSG 120 (434)
T ss_dssp TCCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHH-CS--CC-SSC-----CHHHHHHHHHHHHHCT-TCS--EEEEESSH
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHh-Cc--CC-CCC-----CHHHHHHHHHHHHhCC-CCC--EEEEeCch
Confidence 677899987653 2488888887665432 11 11 111 2345667888999987 566 89999999
Q ss_pred HHHHHHHHhhcCC-CCCCeEEEecccccchHHHHHHHHhcCCeEEEE--ccCCccCccccccccccccccccchhhhhcC
Q 010538 113 TAALKLVGEAFPW-SHQSSYMYTMENHNSVLGIREYALSQGAAAFAI--DVEEAVDNDGLSESLVTSTKISLLPIQRRKG 189 (508)
Q Consensus 113 t~al~~~~~~l~~-~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v--~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~ 189 (508)
|+|+++++..+.. .++++|++....|.........+ .|..+..+ |...........+....+ -.|+++++
T Consensus 121 sea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~~le-- 193 (434)
T 3l44_A 121 TEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVA--AGSGPSTLGTPDSAGVPQSIAQEVITVP---FNNVETLK-- 193 (434)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC---------CCCBSSTTCCHHHHTTEEEEC---TTCHHHHH--
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhh--cCCcccccCCCCcCCCCCcCCCceEecC---cccHHHHH--
Confidence 9999998877632 35678888766554432211110 11111111 110000000000000000 00456666
Q ss_pred CCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEeccccC---CCCC-CCC
Q 010538 190 ASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC---VTQP-PDL 261 (508)
Q Consensus 190 ~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~---g~~~-~d~ 261 (508)
+++.+ ..+++++|++..+++++|.+.| +++|.++|++ +|+++|+|++|+. |... .+.
T Consensus 194 ~~l~~---~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~------------~~illI~DEv~~g~~~g~~~~~~~ 258 (434)
T 3l44_A 194 EALDK---WGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHE------------AGALVIYDEVITAFRFMYGGAQDL 258 (434)
T ss_dssp HHHHH---HGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHT------------TTCEEEEECTTTTTTSSSSCHHHH
T ss_pred HHHHh---CCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHH------------cCCEEEEeccccceeccccHHHHH
Confidence 44421 1246789999988889999998 8899999997 9999999999973 2110 111
Q ss_pred CCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHH
Q 010538 262 SKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRH 341 (508)
Q Consensus 262 ~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~ 341 (508)
.....|+++ ++|.++++-.+|++++++++++.+.+.-. .......+.|...+++..+
T Consensus 259 ~~~~~di~t--~sK~~~~G~~iG~~~~~~~i~~~~~~~~~---------------------~~~~~t~~~~~~a~aaa~a 315 (434)
T 3l44_A 259 LGVTPDLTA--LGKVIGGGLPIGAYGGKKEIMEQVAPLGP---------------------AYQAGTMAGNPASMASGIA 315 (434)
T ss_dssp HTCCCSEEE--EEGGGGTTSSCEEEEECHHHHTTBTTTSS---------------------BCCCCTTTTCHHHHHHHHH
T ss_pred cCCCCCeee--hhhhhcCCcCeeeEEEcHHHHHhhccCCC---------------------cccCCCCCcCHHHHHHHHH
Confidence 122356665 55988743348999999988776654200 0000112345566666777
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCC---------cc
Q 010538 342 GFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGS---------WF 412 (508)
Q Consensus 342 al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------~~ 412 (508)
+++.+.+ +++.++++++.+++++.|+++... .+.+..... .+.++++.+.+.... ..
T Consensus 316 al~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~--~~~~~~~~~---------~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (434)
T 3l44_A 316 CLEVLQQ---EGLYEKLDELGATLEKGILEQAAK--HNIDITLNR---------LKGALTVYFTTNTIEDYDAAQDTDGE 381 (434)
T ss_dssp HHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHH--TTCCEEEEE---------ETTEEEEEESSSCCCSHHHHHHSCHH
T ss_pred HHHHHHc---ccHHHHHHHHHHHHHHHHHHHHHh--CCCCEEEEe---------eccEEEEEEecCcccchhhccccCHH
Confidence 7887644 456677778888888877664100 011111111 267888887532110 00
Q ss_pred CHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHH
Q 010538 413 GYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNR 492 (508)
Q Consensus 413 ~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~ 492 (508)
....+.+.|.++||.++++. .+.+|++ +..|.+|+++++
T Consensus 382 ~~~~~~~~l~~~Gv~v~~~~---------------------------------------~~~~rl~--~~~t~e~i~~~l 420 (434)
T 3l44_A 382 MFGKFFKLMLQEGVNLAPSK---------------------------------------YEAWFLT--TEHTKEDIEYTI 420 (434)
T ss_dssp HHHHHHHHHHHTTEECCSST---------------------------------------TCCEECC--TTCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCeEEeecC---------------------------------------CCcEEEe--cccCHHHHHHHH
Confidence 11347788888999998752 3468886 467999999999
Q ss_pred Hhhhhhhhhhh
Q 010538 493 CSSFDFVNFSQ 503 (508)
Q Consensus 493 ~~~~~~~~~~~ 503 (508)
++|+++++.++
T Consensus 421 ~~l~~~l~~~~ 431 (434)
T 3l44_A 421 EAVGRAFAALA 431 (434)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887654
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.9e-19 Score=179.50 Aligned_cols=347 Identities=13% Similarity=0.056 Sum_probs=224.0
Q ss_pred CeeeeCCCCCCCCHHHHHHHHHHhhcccc--CCCCCccchhhhhhHHHHH-HHHHHHHHcCCCCCCceE-EEcCChHHHH
Q 010538 41 TVYLDHAGATLYSELQMEAIFRDFTTNVY--GNPHSQSDISLATCDIVRA-AREQVLDYFNASMKDYKC-IFTSGATAAL 116 (508)
Q Consensus 41 ~iyld~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~r~~la~~~~~~~~~~~i-~~t~g~t~al 116 (508)
.|-|= ++-...++.|++++ ...+.+.| +.|+..|+.|.+..+.+|. +++++.++||++..++-| +=..|++.|+
T Consensus 56 ~ieLI-ASEN~~S~aV~~a~-gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN 133 (490)
T 3ou5_A 56 GLELI-ASENFCSRAALEAL-GSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPAN 133 (490)
T ss_dssp SEECC-TTCCCCCHHHHHHH-TSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHH
T ss_pred CceEe-cCCCcCCHHHHHHh-cCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHH
Confidence 44443 66777899998886 44555655 5788888888777777776 788899999998763212 2235777899
Q ss_pred HHHHhhcCCCCCCeEEEecccccchHHHH-----HHHHhcCCeEEEE--ccCC-ccCccccccccccccccccchhhhhc
Q 010538 117 KLVGEAFPWSHQSSYMYTMENHNSVLGIR-----EYALSQGAAAFAI--DVEE-AVDNDGLSESLVTSTKISLLPIQRRK 188 (508)
Q Consensus 117 ~~~~~~l~~~~g~~vl~~~~~h~s~~~~~-----~~~~~~G~~v~~v--~~~~-~~~~~~l~~~~~~~~~~~~d~~~l~~ 188 (508)
..++.++ .+|||+|+..+..|.+.+.-- ......|.-...+ +++. ++.+ |.++++
T Consensus 134 ~avy~Al-l~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~I---------------Dyd~~~- 196 (490)
T 3ou5_A 134 LAVYTAL-LQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLI---------------DYNQLA- 196 (490)
T ss_dssp HHHHHHH-CC-CCCEECBC----------------------------CBCEETTTTEE---------------CHHHHH-
T ss_pred HHHHHHH-cCCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcc---------------cHHHHH-
Confidence 9999999 799999998887766543211 1111123222333 3342 3444 577776
Q ss_pred CCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC-----CCCCCCCCC
Q 010538 189 GASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC-----VTQPPDLSK 263 (508)
Q Consensus 189 ~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~-----g~~~~d~~~ 263 (508)
+..+ ..++++|++-. +..-..+|.+++.++|++ .|+++++|.+|-. |..|-++..
T Consensus 197 -~~A~-----~~kPklIi~G~--SaY~r~id~~~~reIAd~------------vGA~Lm~DmAHiaGLVA~g~~psP~~~ 256 (490)
T 3ou5_A 197 -LTAR-----LFRPRLIIAGT--SAYARLIDYARMREVCDE------------VKAHLLADMAHISGLVAAKVIPSPFKH 256 (490)
T ss_dssp -HHHH-----HHCCSEEEECC--SSCCSCCCHHHHHHHHHH------------HTCEEEEECGGGHHHHHTTSSCCGGGT
T ss_pred -HHHh-----hcCCCeEEECC--ccCccccCHHHHHHHHhh------------cccEEEechhhhhhhhcccccCCcccc
Confidence 3322 34678888755 334578899999999998 8999999999964 555555553
Q ss_pred CCCcEEEEeccccccCCCcceEEEEechh---------------HhhhccccccCceEEecccchhhhhhccCccccccC
Q 010538 264 YPVDFVVMSFYKIFGYPTGLGALIMRNDA---------------AKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFED 328 (508)
Q Consensus 264 ~~~D~~~~S~~K~~g~P~G~G~l~~~~~~---------------~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (508)
+|++++|+||+|.||+| |+++.+++. .+++...+|.|. -
T Consensus 257 --ADvVTtTTHKTLrGPrG-G~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~-----------------------q 310 (490)
T 3ou5_A 257 --ADIVTTTTHKTLRGARS-GLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSL-----------------------Q 310 (490)
T ss_dssp --CSEEEEESSSTTCSCSC-EEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTT-----------------------C
T ss_pred --ceEEeccccccccCCCc-eEEEeccccccccccccchhHHHHHHHHHhhcCccc-----------------------c
Confidence 89999999998888997 888888742 223333333222 2
Q ss_pred CCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCC
Q 010538 329 GTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPD 408 (508)
Q Consensus 329 gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 408 (508)
|.|....+++.+.++....+...+...+++.++++.|.+.|.+. |+++++..+. .+++.+++....
T Consensus 311 ggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~-------G~~vvsGgTd-------nHlvLvDl~~~g 376 (490)
T 3ou5_A 311 GGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-------GYSLVSGGTD-------NHLVLVDLRPKG 376 (490)
T ss_dssp SSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-------TCEEGGGSCS-------SSEEEEECGGGT
T ss_pred ccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhC-------CCeeecCCCC-------ceEEEEeccccC
Confidence 56677788888888886555457899999999999999999886 8999976554 788888875432
Q ss_pred CCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC----CC
Q 010538 409 GSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM----ST 484 (508)
Q Consensus 409 ~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~----~t 484 (508)
++..+..+.|++.||.+.--..+. |+ ....++.|||+.... -.
T Consensus 377 ---~tG~~ae~~Le~agItvNkN~iP~--------------------------D~----sp~~~SGiRiGTpa~TtRG~~ 423 (490)
T 3ou5_A 377 ---LDGARAERVLELVSITANKNTCPG--------------------------DR----SAITPGGLRLGAPALTSRQFR 423 (490)
T ss_dssp ---CCHHHHHHHHHHTTEECEEECCTT--------------------------CC----CSSSCSEEEEESHHHHHTTCC
T ss_pred ---CCHHHHHHHHHHcCcEECCCCCCC--------------------------CC----CCCCCCeeEECCHHHHhCCCC
Confidence 455678999999999975322111 10 011367899997543 47
Q ss_pred HHHHHHHHHhhhhhh
Q 010538 485 FEDAKVNRCSSFDFV 499 (508)
Q Consensus 485 ~eev~~l~~~~~~~~ 499 (508)
++|++.+.++|.+.+
T Consensus 424 e~dm~~IA~~I~~~l 438 (490)
T 3ou5_A 424 EDDFRRVVDFIDEGV 438 (490)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999988887655
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.6e-19 Score=187.26 Aligned_cols=310 Identities=14% Similarity=0.081 Sum_probs=198.8
Q ss_pred HHHHhhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEE
Q 010538 29 IRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIF 108 (508)
Q Consensus 29 ~r~~~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~ 108 (508)
++. +|..+ +.....+ .+.+++++.+........++...+..+ ....+++++.+++++|++....++++
T Consensus 22 ~~~-~~~~~-~~~~~~n-------~~~vl~A~~~~~~~~~~~~~~~g~~y~---~~~~~~l~~~la~~~g~~~~~~~i~~ 89 (431)
T 3ht4_A 22 ITE-VHKRA-DEVIESN-------QFRVLESFGKHKISDSHFIPTTGYGYD---DIGRDTLEKVYADVFGAEAGLVRPQI 89 (431)
T ss_dssp THH-HHHHH-HHHHHHH-------HHHHHHHHHHTTCCGGGSCCCCTTCCS---CHHHHHHHHHHHHHTTCSEECCBTTS
T ss_pred HHH-HHHHH-HHHHHHH-------HHHHHHHHHHhchhhhhcCCCCCCCCC---hhhHHHHHHHHHHHhCCCccccccee
Confidence 344 56555 3444444 356777665533222222333333322 12367889999999999754101225
Q ss_pred cCChHHHHHHHHhhcCCCCCCeEEEec-ccccchHHHH-------HHHHhcCCeEEEEccCCccCccccccccccccccc
Q 010538 109 TSGATAALKLVGEAFPWSHQSSYMYTM-ENHNSVLGIR-------EYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKIS 180 (508)
Q Consensus 109 t~g~t~al~~~~~~l~~~~g~~vl~~~-~~h~s~~~~~-------~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~ 180 (508)
+ |+|+|+.+++.++ .++|++|+++. ..|+++...+ ..++..|++++.+|.+.++.+
T Consensus 90 ~-sGt~Ai~~al~al-~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~~v~~~~~~~~-------------- 153 (431)
T 3ht4_A 90 I-SGTHAISTALFGI-LRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLV-------------- 153 (431)
T ss_dssp C-SHHHHHHHHHHTT-CCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEEECCBCTTSSB--------------
T ss_pred e-CHHHHHHHHHHHh-CCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEEEEeCCCCCCCc--------------
Confidence 5 6689999999998 68899999998 7888777655 334557999999999776655
Q ss_pred cchhhhhcCCCCCCCCCCCCCceEEEEeC-CCCCCccccCHHHHHHHHcCCccccccCCCCC--CCeEEEEeccccCCCC
Q 010538 181 LLPIQRRKGASFPERDPAGDAYNLFAFPS-ECNFSGSRFNLDLINIMKKNPERILEISPFSK--GRWMVLIDAAKGCVTQ 257 (508)
Q Consensus 181 ~d~~~l~~~~~l~~~~~~~~~t~lv~~~~-~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~--~g~~vivD~a~~~g~~ 257 (508)
|+++++ +++ +++|++|++++ ++||+|...+++.+.++++ +|++ +|+++++|++++.+..
T Consensus 154 -d~e~l~--~~l------~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~---------la~~~~~~~~livDea~~~~~~ 215 (431)
T 3ht4_A 154 -DFEAVA--AAI------HSNTKMIGIQRSKGYATRPSFTISQIKEMIA---------FVKEIKPDVVVFVDNCYGEFIE 215 (431)
T ss_dssp -CHHHHH--HHC------CTTEEEEEEECSCTTSSSCCCCHHHHHHHHH---------HHHHHCTTCEEEEECTTCTTSS
T ss_pred -CHHHHH--hhc------CCCCeEEEEECCCCCCCCCcCCHHHHHHHHH---------HHHhhCCCCEEEEeCCChhhcc
Confidence 688898 555 46899999995 7777777776666666655 4556 8999999999998765
Q ss_pred CCCCCCCCCcEEEEeccccccC---CCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChh
Q 010538 258 PPDLSKYPVDFVVMSFYKIFGY---PTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFL 334 (508)
Q Consensus 258 ~~d~~~~~~D~~~~S~~K~~g~---P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 334 (508)
..+....++|++++|+||++|+ |.| |++++++++++.++......+ .....+. ++.
T Consensus 216 ~~~~~~~g~Di~~~S~sK~lgg~~~~~G-G~v~~~~~li~~l~~~~~~~~-------------------~g~~~~~-~~~ 274 (431)
T 3ht4_A 216 EQEPCHVGADLMAGSLIKNPGGGIVKTG-GYIVGKEQYVEACAYRLTSPG-------------------IGAEAGA-SLY 274 (431)
T ss_dssp SCCGGGTTCSEEEEETTSGGGTTTCSSC-EEEEECHHHHHHHHHHHSCTT-------------------TTTSCSC-CCS
T ss_pred CCCccccCCeEEEcCccccCCCCCCCce-EEEEecHHHHHHHHHHhccCC-------------------cccccCc-cHH
Confidence 4455556899999999998664 677 999999998887765321110 0001111 111
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCH
Q 010538 335 SIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGY 414 (508)
Q Consensus 335 ~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 414 (508)
....+..+++. ...+.++..+.++++.+.|+++ +++++..... .+...++.+.+++.+ ..
T Consensus 275 ~~~~~~~~l~~-----~~~~~~~~~~~a~~l~~~L~~~-------g~~v~p~~~~----~~~~li~~i~l~~~~----~~ 334 (431)
T 3ht4_A 275 SLQEMYQGFFL-----APHVAGQALKGAIFTAAFLEKL-------GMNTSPAWNA----PRTDLIQSVQFDDKD----RM 334 (431)
T ss_dssp CSHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH-------TCCEESCTTS----CCSSSCCEEECCCHH----HH
T ss_pred HHHHHHhHhhh-----HHHHHHHHHHHHHHHHHHHHhC-------cCEecCCCCC----CCccEEEEEEeCCHH----HH
Confidence 11222334443 2556677888899999999887 4555432221 133458888886321 12
Q ss_pred HHHHHHHhhCC
Q 010538 415 REVEKLASLSG 425 (508)
Q Consensus 415 ~~l~~~L~~~g 425 (508)
..+.+.|++..
T Consensus 335 ~~~~~~l~~~~ 345 (431)
T 3ht4_A 335 IAFCQAIQYAS 345 (431)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHhcC
Confidence 34666776653
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.4e-18 Score=180.19 Aligned_cols=357 Identities=10% Similarity=0.009 Sum_probs=219.3
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+. +..+|.+++++.++...-.+..+...+ ......++.++++++++.+.+ +|+|++|+
T Consensus 53 ~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~-----~~~~~~~lae~l~~~~~~~~~--~v~~~~sG 125 (472)
T 3hmu_A 53 EGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFKT-----THVPAIALAQKLAELAPGDLN--HVFFAGGG 125 (472)
T ss_dssp TCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCSSSSE-----ECHHHHHHHHHHHHHSCTTEE--EEEEESSH
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcccccccccc-----CCHHHHHHHHHHHHhCCCCCC--EEEEeCCH
Confidence 67789998653 445789998886655321111111111 234567788999999987777 89999999
Q ss_pred HHHHHHHHhhcCC-------CCCCeEEEecccccchHHHHHHHHh---------cCCeEEEEccCCccC-cccccccccc
Q 010538 113 TAALKLVGEAFPW-------SHQSSYMYTMENHNSVLGIREYALS---------QGAAAFAIDVEEAVD-NDGLSESLVT 175 (508)
Q Consensus 113 t~al~~~~~~l~~-------~~g~~vl~~~~~h~s~~~~~~~~~~---------~G~~v~~v~~~~~~~-~~~l~~~~~~ 175 (508)
++|+..++..+.. .+++.||+....|.........+.. ....+..+|...... .+.. ..
T Consensus 126 seA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~----~~ 201 (472)
T 3hmu_A 126 SEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGDM----DP 201 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTTC----CH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCccc----CH
Confidence 9999998887732 2466777776555443322221100 011344454321000 0000 00
Q ss_pred ccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecc
Q 010538 176 STKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAA 251 (508)
Q Consensus 176 ~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a 251 (508)
......++++++ +.+.+. ..+++++|++..+++++|.+.| +++|.++|++ +|+++|+|++
T Consensus 202 ~~~~~~~~~~le--~~i~~~--~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~------------~gillI~DEv 265 (472)
T 3hmu_A 202 EEFGLARARELE--EAILEL--GENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDK------------YDILLIADEV 265 (472)
T ss_dssp HHHHHHHHHHHH--HHHHHH--CGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHH------------TTCEEEEECT
T ss_pred HHHHHHHHHHHH--HHHHhc--CCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHH------------cCCEEEEEcc
Confidence 000001145555 443210 1246789999999999999998 8888888887 9999999999
Q ss_pred cc-CCCCC--C--CCCCCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCcccc
Q 010538 252 KG-CVTQP--P--DLSKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEEL 325 (508)
Q Consensus 252 ~~-~g~~~--~--d~~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 325 (508)
|+ +|... . +......|++++| |.+++. -.+|++++++++++.+.+..+..
T Consensus 266 ~~gfgr~G~~~a~~~~~v~pdi~t~s--K~l~gg~~plG~v~~~~~i~~~~~~~~~~~---------------------- 321 (472)
T 3hmu_A 266 ICGFGRTGNWFGTQTMGIRPHIMTIA--KGLSSGYAPIGGSIVCDEVAHVIGKDEFNH---------------------- 321 (472)
T ss_dssp TTTTTTTSSSCHHHHHTCCCSEEEEC--GGGTTTSSCCEEEEEEHHHHHHHTTSCBCC----------------------
T ss_pred ccCCcccCccchhHHhCCCCceeeec--hhhhcCCcceEEEEECHHHHHhcccCCccc----------------------
Confidence 97 44322 1 1112246888665 988743 13799999999887763210000
Q ss_pred ccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHH-HHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEe
Q 010538 326 FEDGTASFLSIASIRHGFNLINSLTVPAICRHIA-SLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNL 404 (508)
Q Consensus 326 ~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~-~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 404 (508)
....+.|....++..++++.+.+ +.+.++++ ++.+++++.|+++.. .+.+..+.+ .+.++.+.+
T Consensus 322 ~~t~~~np~a~aAa~aaL~~~~~---~~~~~~~~~~~~~~l~~~L~~l~~---~~~v~~vr~---------~G~~~~i~~ 386 (472)
T 3hmu_A 322 GYTYSGHPVAAAVALENLRILEE---ENILDHVRNVAAPYLKEKWEALTD---HPLVGEAKI---------VGMMASIAL 386 (472)
T ss_dssp CCTTTTCHHHHHHHHHHHHHHHH---TTHHHHHHHTHHHHHHHHHHGGGG---STTEEEEEE---------ETTEEEEEE
T ss_pred cCCCCCCHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHhc---CCCeEEEEe---------cCceEEEEE
Confidence 00122345566666778887655 35667777 788888888866521 123433322 167888887
Q ss_pred eCCCCC--cc------CHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEE
Q 010538 405 KRPDGS--WF------GYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIR 476 (508)
Q Consensus 405 ~~~~~~--~~------~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iR 476 (508)
...... .+ ....+.+.|.++||.++++ .+++|
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----------------------------------------g~~iR 426 (472)
T 3hmu_A 387 TPNKASRAKFASEPGTIGYICRERCFANNLIMRHV----------------------------------------GDRMI 426 (472)
T ss_dssp CSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEE----------------------------------------TTEEE
T ss_pred ecCccccccccchhHHHHHHHHHHHHHCCcEEEec----------------------------------------CCEEE
Confidence 532110 00 0345778888899998763 26899
Q ss_pred EecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 477 VSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 477 is~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
|++++..|.+|+++++++|+++++-
T Consensus 427 i~p~~~~t~e~i~~~l~~l~~~l~~ 451 (472)
T 3hmu_A 427 ISPPLVITPAEIDEMFVRIRKSLDE 451 (472)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988754
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.6e-17 Score=174.49 Aligned_cols=359 Identities=9% Similarity=0.020 Sum_probs=219.0
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+. +..+|.+++++.+......+..+. . .......++.++++++++.+.+ .|+|++|+
T Consensus 52 ~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~-~-----~~~~~~~~la~~l~~~~~~~~~--~v~~~~sG 123 (476)
T 3i5t_A 52 DGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPW-Y-----MATSPAARLAEKIATLTPGDLN--RIFFTTGG 123 (476)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTT-T-----CBCHHHHHHHHHHHTTSSTTCC--EEEEESSH
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcccC-c-----cCCHHHHHHHHHHHhcCCCCcC--EEEEeCch
Confidence 56778997543 445888988887655321111111 1 1234567788999999987777 89999999
Q ss_pred HHHHHHHHhhcCC-------CCCCeEEEecccccchHHHHHHHHhcC------------CeEEEEccCCc-cCccccccc
Q 010538 113 TAALKLVGEAFPW-------SHQSSYMYTMENHNSVLGIREYALSQG------------AAAFAIDVEEA-VDNDGLSES 172 (508)
Q Consensus 113 t~al~~~~~~l~~-------~~g~~vl~~~~~h~s~~~~~~~~~~~G------------~~v~~v~~~~~-~~~~~l~~~ 172 (508)
++|+..++..+.. .+++.||+....|.........+ .| ..+..++.... ...+.-
T Consensus 124 seA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--- 198 (476)
T 3i5t_A 124 STAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAAC--TGRTGNWPNFDIAQDRISFLSSPNPRHAGNRS--- 198 (476)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHT--CCCGGGCTTSCCCCTTEEEECCCCGGGCTTSC---
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccc--cCChhhccccCCCCCCcEEeCCCcccccCCCc---
Confidence 9999998887632 34567777765555443222211 11 11223332110 000000
Q ss_pred cccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEE
Q 010538 173 LVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLI 248 (508)
Q Consensus 173 ~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~viv 248 (508)
........+++++ +.+.+. ..+++++|++..+++++|.+.+ +++|.++|++ +|+++|+
T Consensus 199 --~~~~~~~~~~~le--~~i~~~--~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~------------~gillI~ 260 (476)
T 3i5t_A 199 --QEAFLDDLVQEFE--DRIESL--GPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEK------------HDILYIS 260 (476)
T ss_dssp --HHHHHHHHHHHHH--HHHHHH--CGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHH------------TTCEEEE
T ss_pred --hHHHHHHHHHHHH--HHHHhc--CCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHH------------cCCEEEE
Confidence 0000000045555 443210 1146799999999999998776 7788888887 9999999
Q ss_pred ecccc-CCCCC--C--C-CCCCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccC
Q 010538 249 DAAKG-CVTQP--P--D-LSKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQG 321 (508)
Q Consensus 249 D~a~~-~g~~~--~--d-~~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~ 321 (508)
|++|+ +|... . . ......|++++| |.+++. ..+|++++++++.+.+.+.......
T Consensus 261 DEv~~g~gr~G~~~~~~~~~~v~pdi~t~s--K~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~---------------- 322 (476)
T 3i5t_A 261 DEVVTGFGRCGEWFASEKVFGVVPDIITFA--KGVTSGYVPLGGLAISEAVLARISGENAKGSW---------------- 322 (476)
T ss_dssp ECTTTTTTTTSSSCHHHHTTCCCCSEEEEC--GGGGTTSSCCEEEEECHHHHHTTSGGGCTTCE----------------
T ss_pred EecccCCccccCceeeecccCCCcchhhhh--hhhcCCCcCeEEEEECHHHHHHHhcCCccccc----------------
Confidence 99987 43221 1 1 222346887655 988742 2379999999988766543100000
Q ss_pred ccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEE
Q 010538 322 VEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVS 401 (508)
Q Consensus 322 ~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 401 (508)
-......+.|...+++..++++.+.+ +.+.++++++.+++++.|+++. ..+.+..+.+. +.++.
T Consensus 323 -~~~~~t~~~np~a~aAa~aaL~~~~~---~~~~~~~~~~~~~l~~~L~~l~---~~~~v~~v~~~---------G~~~~ 386 (476)
T 3i5t_A 323 -FTNGYTYSNQPVACAAALANIELMER---EGIVDQAREMADYFAAALASLR---DLPGVAETRSV---------GLVGC 386 (476)
T ss_dssp -ECCCCTTTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHTTT---TSTTEEEEEEE---------TTEEE
T ss_pred -ccccCCCCcCHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHh---cCCCeEEEEec---------CceeE
Confidence 00001123455666677778887655 4567888888899998887652 11334433222 67778
Q ss_pred EEeeCCCCCc--c-----CHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCce
Q 010538 402 FNLKRPDGSW--F-----GYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGA 474 (508)
Q Consensus 402 ~~~~~~~~~~--~-----~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (508)
+.+....... + ....+.+.|.++||.+++. .+.
T Consensus 387 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----------------------------------------g~~ 426 (476)
T 3i5t_A 387 VQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPL----------------------------------------GDL 426 (476)
T ss_dssp EEECCC-----CCHHHHHHHHHHHHHHHHTTEECEEE----------------------------------------TTE
T ss_pred EEEecCccccccccchhHHHHHHHHHHHHCCCEEEec----------------------------------------CCE
Confidence 8775421110 0 0235777888899998762 368
Q ss_pred EEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 475 IRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 475 iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
+||++.+..|.+|+++++++|+++++-+
T Consensus 427 iRi~p~l~~t~e~i~~~l~~l~~~l~~~ 454 (476)
T 3i5t_A 427 CVISPPLIISRAQIDEMVAIMRQAITEV 454 (476)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887553
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.3e-19 Score=186.01 Aligned_cols=330 Identities=14% Similarity=0.107 Sum_probs=205.6
Q ss_pred CCCeeeeCCCCC------CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGAT------LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..++. ..+|.+++++.+... .. .+..+ ......++.++++++++ +++ +|+|++|+
T Consensus 50 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~---~~~~~-----~~~~~~~la~~l~~~~~-~~~--~v~~~~gg 117 (427)
T 3fq8_A 50 DGNRYIDYVGTWGPAICGHAHPEVIEALKVAME-KG---TSFGA-----PCALENVLAEMVNDAVP-SIE--MVRFVNSG 117 (427)
T ss_dssp TSCEEEESSGGGTTCTTCBTCHHHHHHHHHHHT-TC---SCCSS-----CCHHHHHHHHHHHHHST-TCS--EEEEESSH
T ss_pred CCCEEEECCCchhhhccCCCCHHHHHHHHHHHH-hC---CCcCC-----CCHHHHHHHHHHHHhCC-CCC--EEEEeCCH
Confidence 567789986643 238888888766542 21 11111 23456778889999998 667 89999999
Q ss_pred HHHHHHHHhhcC-CCCCCeEEEecccccc-hHHHHHH----HHhcC------------CeEEEEccCCccCccccccccc
Q 010538 113 TAALKLVGEAFP-WSHQSSYMYTMENHNS-VLGIREY----ALSQG------------AAAFAIDVEEAVDNDGLSESLV 174 (508)
Q Consensus 113 t~al~~~~~~l~-~~~g~~vl~~~~~h~s-~~~~~~~----~~~~G------------~~v~~v~~~~~~~~~~l~~~~~ 174 (508)
++|+.+++.... ..+++.||+....|.+ ....... ....+ ..+..+|.+
T Consensus 118 sea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 184 (427)
T 3fq8_A 118 TEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN------------- 184 (427)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT-------------
T ss_pred HHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCC-------------
Confidence 999999884321 1344566665544433 2211000 00000 012222221
Q ss_pred cccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEec
Q 010538 175 TSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDA 250 (508)
Q Consensus 175 ~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~ 250 (508)
|+++++ +++.+ ..+++++|++..+++++|.+.| +++|.++|++ +|+++|+|+
T Consensus 185 -------d~~~le--~~l~~---~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~------------~~~~li~DE 240 (427)
T 3fq8_A 185 -------DLEAVK--ALFAE---NPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLE------------HDALLVFDE 240 (427)
T ss_dssp -------CHHHHH--HHHHH---STTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHH------------TTCEEEEEC
T ss_pred -------CHHHHH--HHHHh---CCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHH------------cCCEEEEec
Confidence 356666 44422 1347899999999999999999 9999999997 999999999
Q ss_pred cccCCCCC-----CCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCcc
Q 010538 251 AKGCVTQP-----PDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 251 a~~~g~~~-----~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
+|+ |... .+......|+.+ ++|.++ + | +|++++++++++.+.+.-
T Consensus 241 v~~-g~~~g~~~~~~~~~~~~di~t--~sK~~~-~-G~~~G~~~~~~~~~~~~~~~~----------------------- 292 (427)
T 3fq8_A 241 VIT-GFRIAYGGVQEKFGVTPDLTT--LGKIIG-G-GLPVGAYGGKREIMQLVAPAG----------------------- 292 (427)
T ss_dssp TTT-BTTTBTTHHHHHTTCCCSEEE--ECGGGG-T-TSSCEEEEECHHHHTTBTTTS-----------------------
T ss_pred ccc-ccccCcchhhHhcCCCCChhh--hhhhhh-C-CcceEEEEEcHHHHHhhccCC-----------------------
Confidence 997 2210 111222457654 459988 5 5 899999998877665420
Q ss_pred ccccCC--CCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEE
Q 010538 324 ELFEDG--TASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVS 401 (508)
Q Consensus 324 ~~~~~g--t~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 401 (508)
.....+ +.|...+++..++++.+.+ +.+.++++++.+++++.|+++.... ++... ... .+.+++
T Consensus 293 ~~~~~~t~~~~~~~~aa~~aal~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~-~~~-------~g~~~~ 358 (427)
T 3fq8_A 293 PMYQAGTLSGNPLAMTAGIKTLELLRQ---PGTYEYLDQITKRLSDGLLAIAQET---GHAAC-GGQ-------VSGMFG 358 (427)
T ss_dssp SBCCCCTTTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHT---TCCCE-EEE-------ETTEEE
T ss_pred CccccCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhC---CCCeE-EEE-------eeeEEE
Confidence 001112 2366667777777877644 4566777888888888776641000 01000 111 267888
Q ss_pred EEeeCCCCC---------ccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCC
Q 010538 402 FNLKRPDGS---------WFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPT 472 (508)
Q Consensus 402 ~~~~~~~~~---------~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 472 (508)
+.+.+.... ......+.+.|.++||.++++. .
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~---------------------------------------~ 399 (427)
T 3fq8_A 359 FFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQ---------------------------------------F 399 (427)
T ss_dssp EESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSST---------------------------------------T
T ss_pred EEEecCccccccccccccHHHHHHHHHHHHHCCcEEecCC---------------------------------------C
Confidence 887643211 0012357788888999988742 1
Q ss_pred ceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 473 GAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 473 ~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
.|++++..+|.+|+++++++|+++++
T Consensus 400 --~r~~~~~~~t~e~i~~~l~~l~~~l~ 425 (427)
T 3fq8_A 400 --EAGFTSLAHTEEDIDATLAAARTVMS 425 (427)
T ss_dssp --SCEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred --CCEEeeCcCCHHHHHHHHHHHHHHHH
Confidence 25666778899999999999998765
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-17 Score=173.96 Aligned_cols=355 Identities=10% Similarity=-0.008 Sum_probs=212.8
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC-CCCceEEEcCC
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS-MKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~~~i~~t~g 111 (508)
++..|+|..++ +..+|.+++++.+... .. ..... .........++.++++++++.. .+ +|+||+|
T Consensus 59 ~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~-~~-~~~~~----~~~~~~~~~~la~~l~~~~~~~~~~--~v~~~~s 130 (451)
T 3oks_A 59 DGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVG-DF-THTCF----MVTPYEGYVAVCEQLNRLTPVRGDK--RSALFNS 130 (451)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHT-TC-SCCTT----TTSCCHHHHHHHHHHHHHSSCCSSE--EEEEESS
T ss_pred CCCEEEEcCCCccccccCCCCHHHHHHHHHHHH-hc-ccccC----CccCCHHHHHHHHHHHHhCCcCCCC--EEEEeCc
Confidence 66789998653 3348888888766543 21 11110 1112345667888999998754 35 8999999
Q ss_pred hHHHHHHHHhhcCC-CCCCeEEEecccccchHHHHHHHHh-----------cCCeEEEEccCCccC-----ccccccccc
Q 010538 112 ATAALKLVGEAFPW-SHQSSYMYTMENHNSVLGIREYALS-----------QGAAAFAIDVEEAVD-----NDGLSESLV 174 (508)
Q Consensus 112 ~t~al~~~~~~l~~-~~g~~vl~~~~~h~s~~~~~~~~~~-----------~G~~v~~v~~~~~~~-----~~~l~~~~~ 174 (508)
+|+|+.+++..... .+++.|++....|.+.......+.. ....+..+|...... .+.
T Consensus 131 GseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------ 204 (451)
T 3oks_A 131 GSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKEL------ 204 (451)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTT------
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCcccccccccccc------
Confidence 99999998876532 3557788776666554433222210 012456666541100 000
Q ss_pred cccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEec
Q 010538 175 TSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDA 250 (508)
Q Consensus 175 ~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~ 250 (508)
......+++.++ +.|++ ....+++++|++..+++..|.+.+ +++|.++|++ ||+++|+|+
T Consensus 205 -~~~~~~~~~~~~--~~l~~-~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~------------~g~~lI~DE 268 (451)
T 3oks_A 205 -ATDGELAAKRAI--TVIDK-QIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRK------------NDVVFIADE 268 (451)
T ss_dssp -TTCHHHHHHHHH--HHHHH-HTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHH------------TTCEEEEEC
T ss_pred -chhhHHHHHHHH--HHHHh-hcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHH------------cCCEEEEEe
Confidence 000000122222 11110 001246788888888778888887 8888888887 999999999
Q ss_pred ccc-CCCCC--C--CCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCcccc
Q 010538 251 AKG-CVTQP--P--DLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEEL 325 (508)
Q Consensus 251 a~~-~g~~~--~--d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 325 (508)
+|+ +|... . +......|++ |++|.+++.-.+|++++++++++.+.+...+.
T Consensus 269 v~~g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~G~~iG~v~~~~~~~~~~~~~~~~~---------------------- 324 (451)
T 3oks_A 269 VQTGFARTGAMFACEHEGIDPDLI--VTAKGIAGGLPLSAVTGRAEIMDSPHVSGLGG---------------------- 324 (451)
T ss_dssp TTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSCEEEEEEHHHHTCSCTTSBCC----------------------
T ss_pred cccCCCccccchhhhhcCCCCCee--eehhhhhCCcceEEEEECHHHHhhhcCCCcCC----------------------
Confidence 987 33221 1 1112245776 55598883123899999999877665432111
Q ss_pred ccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEee
Q 010538 326 FEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLK 405 (508)
Q Consensus 326 ~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 405 (508)
..+.|....++..++++.+.+. .+.++.+++.+++++.|.++.. ..+.+..+.. .+.++++.+.
T Consensus 325 --t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~---------~G~~~~~~~~ 388 (451)
T 3oks_A 325 --TYGGNPIACAAALATIETIESE---GLVARAQQIEKIMKDRLGRLQA--EDDRIGDVRG---------RGAMIAMELV 388 (451)
T ss_dssp --SSSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHH--HCTTEEEEEE---------ETTEEEEEEB
T ss_pred --CCCCCHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHh--hCCCeEEEEE---------eeEEEEEEEe
Confidence 1234555566666778876553 4556666667777666654310 0023333222 1678888875
Q ss_pred CCCC---CccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC
Q 010538 406 RPDG---SWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM 482 (508)
Q Consensus 406 ~~~~---~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 482 (508)
+... .......+.+.|.++||.++++.. ..+.+|+++++.
T Consensus 389 ~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------------------------------------~~~~iRi~~~~~ 431 (451)
T 3oks_A 389 KAGTTEPDADLTKALCAGAHAAGVIVLSCGT-------------------------------------YGNVVRFLPPLS 431 (451)
T ss_dssp STTSCCBCHHHHHHHHHHHHHTTEECEEECT-------------------------------------TSCEEEECCCTT
T ss_pred cCccCCCCHHHHHHHHHHHHhCCcEEecCCC-------------------------------------CCCEEEEECCCC
Confidence 3110 111234578888899999887421 146899999999
Q ss_pred CCHHHHHHHHHhhhhhhh
Q 010538 483 STFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 483 ~t~eev~~l~~~~~~~~~ 500 (508)
.|.+|+++++++|+++++
T Consensus 432 ~t~e~i~~~l~~l~~~l~ 449 (451)
T 3oks_A 432 IGDDLLNEGLDVLEEVLR 449 (451)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 999999999999988764
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-17 Score=175.39 Aligned_cols=356 Identities=10% Similarity=0.044 Sum_probs=214.1
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC-CCCceEEEcCC
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS-MKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~~~i~~t~g 111 (508)
++.-|+|..++ +..+|.+++++.+.+. ........ ........+++++++++++.+ .+ +|+||+|
T Consensus 62 ~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~-~~~~~~~~-----~~~~~~~~~la~~l~~~~~~~~~~--~v~~~~s 133 (453)
T 4ffc_A 62 DGNSFIDLGAGIAVTTVGASHPAVAAAIADQAT-HFTHTCFM-----VTPYEQYVQVAELLNALTPGDHDK--RTALFNS 133 (453)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHH-HCSCCTTT-----TSCCHHHHHHHHHHHHHSSCSSCE--EEEEESS
T ss_pred CCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHH-hccccccC-----cCCCHHHHHHHHHHHHhCCCCCCc--EEEEeCc
Confidence 66789998653 3348888888766543 22111111 112345677889999999865 45 8999999
Q ss_pred hHHHHHHHHhhcCC-CCCCeEEEecccccchHHHHHHHHh-----------cCCeEEEEccCCcc-Cccccccccccccc
Q 010538 112 ATAALKLVGEAFPW-SHQSSYMYTMENHNSVLGIREYALS-----------QGAAAFAIDVEEAV-DNDGLSESLVTSTK 178 (508)
Q Consensus 112 ~t~al~~~~~~l~~-~~g~~vl~~~~~h~s~~~~~~~~~~-----------~G~~v~~v~~~~~~-~~~~l~~~~~~~~~ 178 (508)
+|+|+++++..... .+++.|++....|.........+.. ....+..+|..... +.... .....
T Consensus 134 GseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~~ 209 (453)
T 4ffc_A 134 GAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGL----TGEEA 209 (453)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTC----CHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCcccc----chHHH
Confidence 99999998876522 3557787776665544333222210 01145556553110 00000 00011
Q ss_pred cccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecccc-
Q 010538 179 ISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKG- 253 (508)
Q Consensus 179 ~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~- 253 (508)
+..+.+.++ +++. .+++++|++..+++..|.+.+ +++|.++|++ ||+++|+|++|+
T Consensus 210 ~~~~~~~l~--~~i~-----~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~------------~~~llI~DEv~~g 270 (453)
T 4ffc_A 210 ARRAISRIE--TQIG-----AQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASE------------NGVVFIADEVQTG 270 (453)
T ss_dssp HHHHHHHHH--HHTC-----GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHH------------HTCEEEEECTTTT
T ss_pred HHHHHHHHH--HhcC-----CCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHH------------cCCEEEEecCccC
Confidence 122345666 3331 235677777777667777877 7888888887 999999999987
Q ss_pred CCCCCC----CCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCC
Q 010538 254 CVTQPP----DLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDG 329 (508)
Q Consensus 254 ~g~~~~----d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 329 (508)
+|.... +......|++++ +|.+++.-.+|++++++++++.+.+...+. ..
T Consensus 271 ~g~~g~~~a~~~~~~~pdi~t~--sK~~~~G~~~G~~~~~~~i~~~~~~~~~~~------------------------t~ 324 (453)
T 4ffc_A 271 FARTGAWFASEHEGIVPDIVTM--AKGIAGGMPLSAVTGRAELMDAVYAGGLGG------------------------TY 324 (453)
T ss_dssp TTTTSSSSTHHHHTCCCSEEEE--CGGGGTTSSCEEEEEEHHHHTTSCTTSSCC------------------------SS
T ss_pred CCcccccchhhhcCCCcchHhh--hhhhcCCcCeEEEEECHHHHhhhcccCcCC------------------------CC
Confidence 332211 111223566654 598883113899999999877666542111 12
Q ss_pred CCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCC
Q 010538 330 TASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDG 409 (508)
Q Consensus 330 t~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 409 (508)
+.|....++..++++.+.+. .+.++++++.+++++.|+++.. ..+.+..+.. .+.++++.+.+...
T Consensus 325 ~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~---------~g~~~~~~~~~~~~ 390 (453)
T 4ffc_A 325 GGNPVTCAAAVAALGVMREL---DLPARARAIEASVTSRLSALAE--EVDIIGEVRG---------RGAMLAIEIVKPGT 390 (453)
T ss_dssp SSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHH--HCSSEEEEEE---------ETTEEEEEEBCTTS
T ss_pred CcCHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHh--hCCCeEEEEe---------eceEEEEEEecCcc
Confidence 23455566666677766543 4556666666666666654310 0023333322 16788888754110
Q ss_pred ---CccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHH
Q 010538 410 ---SWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFE 486 (508)
Q Consensus 410 ---~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~e 486 (508)
.......+.+.|.++||.++++.. ..+.+|+++++..|.+
T Consensus 391 ~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------------------------------------~~~~iRi~~~~~~t~e 433 (453)
T 4ffc_A 391 LEPDAALTKSIAAEALSQGVLILTCGT-------------------------------------FGNVIRLLPPLVIGDD 433 (453)
T ss_dssp CCBCHHHHHHHHHHHHHTTEECCEECT-------------------------------------TSCEEEECCCTTCCHH
T ss_pred cCCCHHHHHHHHHHHHhCCCEEecCCC-------------------------------------CCCEEEEECCCCCCHH
Confidence 111234577888899999987421 1478999999999999
Q ss_pred HHHHHHHhhhhhhhhh
Q 010538 487 DAKVNRCSSFDFVNFS 502 (508)
Q Consensus 487 ev~~l~~~~~~~~~~~ 502 (508)
|++++++.|+++++-+
T Consensus 434 ~i~~~l~~l~~~l~~~ 449 (453)
T 4ffc_A 434 LLDEGITALSDIIRAK 449 (453)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887654
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-18 Score=180.71 Aligned_cols=347 Identities=12% Similarity=0.007 Sum_probs=206.8
Q ss_pred chHHHHHHhhccCC-CCCeeeeCCC------CCCCCHHHHHHHHHHhh-ccccCCCCCccchhhhhhHHHHHHHHHHHHH
Q 010538 25 SIDQIRATEFKRLE-NGTVYLDHAG------ATLYSELQMEAIFRDFT-TNVYGNPHSQSDISLATCDIVRAAREQVLDY 96 (508)
Q Consensus 25 ~~~~~r~~~f~~~~-~~~iyld~~~------~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~ 96 (508)
.+..+.+ .|.... ++.|.|.-|. ..++++.+.++. . .. .. .....|....+ ..+.|+.++++
T Consensus 15 ~i~~~~~-~~~~~~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~-~-~~~~~---~~~~~Y~~~~G----~~~lr~aia~~ 84 (405)
T 3k7y_A 15 NILKTAR-EFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNAD-K-LVTEN---YKEKPYLLGNG----TEDFSTLTQNL 84 (405)
T ss_dssp HHHHHHH-HHTTSSCSSCEECSCSSCBCTTSSBCCCHHHHHHH-H-HHHHH---CCCCCCCTTSS----CHHHHHHHHHH
T ss_pred hHHHHHH-HHhcCCCcCcEEeeeeeeECCCCCCcccHHHHHHH-H-HhcCC---CCCCCCCCCCC----cHHHHHHHHHH
Confidence 3556666 666542 5788888664 123455555553 3 32 11 01112222222 34455555555
Q ss_pred c----CC--CCCCceEEEcCChHHHHHHHHhhcCC-CCCCeEEEecccccchHHHHHHHHhcCCeEEEEccC-C-ccCcc
Q 010538 97 F----NA--SMKDYKCIFTSGATAALKLVGEAFPW-SHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVE-E-AVDND 167 (508)
Q Consensus 97 ~----~~--~~~~~~i~~t~g~t~al~~~~~~l~~-~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~-~-~~~~~ 167 (508)
+ +. +++..++++|+|+++|+.+++.++.. .+ ++|+++...|+++. ..++..|.+++.+|+. . +..+
T Consensus 85 ~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~- 159 (405)
T 3k7y_A 85 IFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHV---NMIESRGFNLKYINFFDYNLIDI- 159 (405)
T ss_dssp HHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHH---HHHHTTTCEEEEECCEETTTTEE-
T ss_pred HcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHH---HHHHHcCCeEEEEeccccccCCc-
Confidence 4 22 23311369999999999999988732 26 99998886666554 4455679999999983 2 2233
Q ss_pred ccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCC-CCCCccccCHHHHHHHHcCCccccccCCCCCCCeEE
Q 010538 168 GLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSE-CNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMV 246 (508)
Q Consensus 168 ~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~-~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~v 246 (508)
|+++++ +++.+ .+++++++++.+ |||||.+++.+++.++++ +|++++++|
T Consensus 160 --------------d~~~l~--~~l~~----~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~---------~~~~~~~~v 210 (405)
T 3k7y_A 160 --------------NYDLFL--NDLRN----IPNGSSVILQISCYNPCSVNIEEKYFDEIIE---------IVLHKKHVI 210 (405)
T ss_dssp --------------CHHHHH--HHHHH----SCSSCEEEECCSSCTTTCCCCCHHHHHHHHH---------HHHHHCCEE
T ss_pred --------------CHHHHH--HHHHh----CCCCeEEEEeCCCCCCCCCCCCHHHHHHHHH---------HHHHCCeEE
Confidence 677777 54421 145678887654 899999999998887776 566699999
Q ss_pred EEeccccCCC-CCCC-----C----CCCCCcEEEEeccccccCCCc--ceEEEE---echhHhhhccccccCceEEeccc
Q 010538 247 LIDAAKGCVT-QPPD-----L----SKYPVDFVVMSFYKIFGYPTG--LGALIM---RNDAAKLLKNTYFSGGTVAASIA 311 (508)
Q Consensus 247 ivD~a~~~g~-~~~d-----~----~~~~~D~~~~S~~K~~g~P~G--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~ 311 (508)
|+|.++..-. ...+ + ...+.-+++.|++|.|+ .+| +||+++ +++.++.+...+..
T Consensus 211 i~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-l~GlRiG~~~~~~~~~~~~~~~~~~l~~--------- 280 (405)
T 3k7y_A 211 IFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMS-LYGERAGALHIVCKNQEEKKIVFNNLCF--------- 280 (405)
T ss_dssp EEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSC-CTTTTEEEEEEECSSHHHHHHHHHHHHH---------
T ss_pred EEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCC-CccccceEEEEEeCCHHHHHHHHHHHHH---------
Confidence 9999886311 1110 1 11123478899999999 667 899875 34444333221100
Q ss_pred chhhhhhccCccccccCCCCChhHHHHHHHHHHH------HHhcChHHHHHHHHHHHHHHHHHHh----cccCCCCCceE
Q 010538 312 DIDFVKRRQGVEELFEDGTASFLSIASIRHGFNL------INSLTVPAICRHIASLGMYVRKVLL----SLRHENGADVC 381 (508)
Q Consensus 312 ~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~------~~~~g~~~i~~~~~~l~~~l~~~L~----~l~~~~~~~~~ 381 (508)
..+.....++..+..++..++.. +.+ .+..+++++++.++++.+.|+ ++.. ..++
T Consensus 281 -----------~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~-~l~~~~~~~~~~R~~l~~~L~~~~~~~g~---~~~~ 345 (405)
T 3k7y_A 281 -----------IVRKFYSSPVIHTNRILCQLLNNQNLKLNWIK-ELSQLSQRITNNRILFFNKLETYQKKYNL---NYDW 345 (405)
T ss_dssp -----------HHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHGGGGTC---CCCG
T ss_pred -----------HHhcccCCCcHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhcCC---CCCC
Confidence 00011122333333333333321 111 256777889999999999998 6520 0113
Q ss_pred EEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccC
Q 010538 382 TIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCW 461 (508)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 461 (508)
++..+++ +.++++.++. . ....|+++||.+.+|
T Consensus 346 ~~~~p~g--------g~f~~~~l~~---~------~~~~L~~~gV~v~p~------------------------------ 378 (405)
T 3k7y_A 346 NVYKKQR--------GLFSFVPLLA---K------IAEHLKTHHIYIINN------------------------------ 378 (405)
T ss_dssp GGGSSCC--------SSEEECGGGG---G------GTTTTTTTTEECCTT------------------------------
T ss_pred ccccCCc--------eEEEecCCCH---H------HHHHHHHCCEeecCC------------------------------
Confidence 4444432 5677665543 1 224457889998762
Q ss_pred CCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 462 DDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 462 ~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
+ |||++. .+.+++++++++|++.++.
T Consensus 379 -----------~--Ris~a~-~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 379 -----------G--RINVSG-ITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp -----------S--EEEGGG-CCTTHHHHHHHHHHHHHHC
T ss_pred -----------C--eEEEec-cCHHHHHHHHHHHHHHHhh
Confidence 2 999973 3568999999999988753
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-18 Score=181.44 Aligned_cols=336 Identities=11% Similarity=-0.001 Sum_probs=206.4
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..+. +..+|.+++++.+... .. . ...+ ......+++++++++++ .++ +|+||+|+
T Consensus 54 ~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~-~~--~-~~~~-----~~~~~~~l~~~la~~~~-~~~--~v~~~~sg 121 (434)
T 2epj_A 54 DGARIVDLVLAYGPLILGHKHPRVLEAVEEALA-RG--W-LYGA-----PGEAEVLLAEKILGYVK-RGG--MIRFVNSG 121 (434)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHH-TC--S-CCSS-----CCHHHHHHHHHHHHHHC-TTC--EEEEESSH
T ss_pred CCCEEEEcccchhcccCCCCCHHHHHHHHHHHH-hC--C-CCCC-----CCHHHHHHHHHHHHhCC-CCC--EEEEeCCH
Confidence 56778887643 3357888888766543 21 1 1111 23456778899999986 456 89999999
Q ss_pred HHHHHHHHhhcC-CCCCCeEEEecccccc-hHHHHHHH----------HhcCC------eEEEEccCCccCccccccccc
Q 010538 113 TAALKLVGEAFP-WSHQSSYMYTMENHNS-VLGIREYA----------LSQGA------AAFAIDVEEAVDNDGLSESLV 174 (508)
Q Consensus 113 t~al~~~~~~l~-~~~g~~vl~~~~~h~s-~~~~~~~~----------~~~G~------~v~~v~~~~~~~~~~l~~~~~ 174 (508)
|+|+.+++.+.. ..+++.||+....|.+ ........ ...|+ .+..+|.+
T Consensus 122 seA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~------------- 188 (434)
T 2epj_A 122 TEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYN------------- 188 (434)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETT-------------
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCC-------------
Confidence 999999888611 1234556655544433 22111000 00122 23334321
Q ss_pred cccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEec
Q 010538 175 TSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDA 250 (508)
Q Consensus 175 ~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~ 250 (508)
|+++++ +++++. .+++++|+++.+++++|.+.| +++|.++|++ +|+++|+|+
T Consensus 189 -------d~~~le--~~l~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~------------~g~~lI~DE 244 (434)
T 2epj_A 189 -------DVEALE--RVFAEY---GDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRE------------SGALLILDE 244 (434)
T ss_dssp -------CHHHHH--HHHHHH---GGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHH------------HTCEEEEEE
T ss_pred -------CHHHHH--HHHHhC---CCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHH------------cCCEEEEEc
Confidence 355666 444210 146789999888888999998 8889998887 999999999
Q ss_pred cccCCCCC---C--CCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCcccc
Q 010538 251 AKGCVTQP---P--DLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEEL 325 (508)
Q Consensus 251 a~~~g~~~---~--d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 325 (508)
+|+ |... . +......|++ |++|++++.-.+|++++++++++.+.+. +. ...
T Consensus 245 v~~-g~~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~v~~~~~~~~~l~~~--~~-------------------~~~ 300 (434)
T 2epj_A 245 VVT-GFRLGLEGAQGYFNIEGDII--VLGKIIGGGFPVGAVAGSREVMSLLTPQ--GK-------------------VFN 300 (434)
T ss_dssp TTT-TTTSSTTHHHHHHTCCCSEE--EEEGGGGTTSSCEEEEECHHHHTTBTTT--SS-------------------BCC
T ss_pred chh-ceeCCcchhhHHhCCCCCee--eecchhcCCcceeeeeecHHHHHhhccC--CC-------------------ccc
Confidence 998 3311 0 0111246775 5569888311279999999887665542 00 000
Q ss_pred ccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEee
Q 010538 326 FEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLK 405 (508)
Q Consensus 326 ~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 405 (508)
....+.|...+++..++++.+.+ +.+.+++.++++++++.|+++... .++....+. .+.++++.++
T Consensus 301 ~~t~~~~~~~~aa~~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~---~~~~~~~~~--------~g~~~~i~~~ 366 (434)
T 2epj_A 301 AGTFNAHPITMAAGLATLKALEE---EPVYSVSREAAKALEEAASEVLDR---TGLPYTINR--------VESMMQLFIG 366 (434)
T ss_dssp CCTTTTCHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHH---HTCCEEEEE--------ETTEEEEEET
T ss_pred CCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHhh---CCCcEEEEE--------eeeEEEEEEe
Confidence 01123456667777778887765 356788888889998888764100 012111111 2688888886
Q ss_pred CCCC---------CccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEE
Q 010538 406 RPDG---------SWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIR 476 (508)
Q Consensus 406 ~~~~---------~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iR 476 (508)
+... ......++.+.|.++||.++++. ...+|
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------------------------------------~~~~~ 407 (434)
T 2epj_A 367 VEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSN---------------------------------------LEAVF 407 (434)
T ss_dssp CSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSST---------------------------------------TSCEE
T ss_pred CCCcccchhccccCHHHHHHHHHHHHHCCeEEeccC---------------------------------------CCcEE
Confidence 4110 00123457788888999998752 12355
Q ss_pred EecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 477 VSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 477 is~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
+ ++.+|.+|++++++.|+++++.+
T Consensus 408 ~--~~~~t~e~i~~~l~~l~~~l~~~ 431 (434)
T 2epj_A 408 T--GLPHQGEALEIAVEGLRSSLKTV 431 (434)
T ss_dssp C--CTTCSHHHHHHHHHHHHHHHHHH
T ss_pred E--eccCCHHHHHHHHHHHHHHHHHH
Confidence 4 46789999999999999887643
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-17 Score=174.25 Aligned_cols=351 Identities=12% Similarity=0.033 Sum_probs=204.0
Q ss_pred CCCeeeeCCCCCC------CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGATL------YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|+.++.. .+|.+++++.+... ... ...+ ......++.++++++++ .++ +++||+|+
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~-~~~---~~~~-----~~~~~~~la~~l~~~~~-~~~--~v~~~~sG 118 (429)
T 4e77_A 51 DGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVE-RGL---SFGA-----PTEMEVKMAQLVTDLVP-TMD--MVRMVNSG 118 (429)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHT-TCS---CCSS-----CCHHHHHHHHHHHHHST-TCS--EEEEESSH
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHH-hCc---ccCC-----CCHHHHHHHHHHHhhCC-CCC--EEEEeCcH
Confidence 6788999876542 47889888766543 211 1111 12456677889999987 566 89999999
Q ss_pred HHHHHHHHhhcC-CCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCcccccccccccccc-ccchhhhhcCC
Q 010538 113 TAALKLVGEAFP-WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKI-SLLPIQRRKGA 190 (508)
Q Consensus 113 t~al~~~~~~l~-~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~-~~d~~~l~~~~ 190 (508)
|+|+++++.... ..+++.|++....|.+.....-.....+......|....... .. ......+ -.|+++++ +
T Consensus 119 sea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~d~~~le--~ 192 (429)
T 4e77_A 119 TEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPT-DF---AKHTLTCTYNDLASVR--Q 192 (429)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCG-GG---GTTEEEECTTCHHHHH--H
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCC-cc---CCceeecCCCCHHHHH--H
Confidence 999999887432 234566666654444332211111011111111111110000 00 0000000 01466676 5
Q ss_pred CCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecccc---CCCCC-CCCC
Q 010538 191 SFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKG---CVTQP-PDLS 262 (508)
Q Consensus 191 ~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~---~g~~~-~d~~ 262 (508)
++++ ..+++++|++..+++.+|.+.| +++|.++|++ +|+++|+|++|+ .|... .+..
T Consensus 193 ~l~~---~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~------------~~~lli~DEv~~g~r~g~~~~~~~~ 257 (429)
T 4e77_A 193 AFEQ---YPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDE------------FGALLIIDEVMTGFRVALAGAQDYY 257 (429)
T ss_dssp HHHH---STTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHH------------HTCEEEEEETTTBTTTBTTCHHHHT
T ss_pred HHHh---cCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHH------------cCCEEEEeccccCcccCcchHHHhc
Confidence 5532 1356788888888888899988 8999999997 999999999998 22210 1111
Q ss_pred CCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHH
Q 010538 263 KYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHG 342 (508)
Q Consensus 263 ~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~a 342 (508)
....|++ |++|.+++...+|++++++++++.+.+.-. .......+.|...+++..++
T Consensus 258 ~~~pdi~--t~sK~~~~G~~~G~~~~~~~~~~~l~~~~~---------------------~~~~~t~~~~~~~~aaa~aa 314 (429)
T 4e77_A 258 HVIPDLT--CLGKIIGGGMPVGAFGGRREVMNALAPTGP---------------------VYQAGTLSGNPIAMAAGFAC 314 (429)
T ss_dssp TCCCSEE--EEEGGGGTTSCCEEEEECHHHHTTBTTTSS---------------------BCC--CCCCCHHHHHHHHHH
T ss_pred CCCCCee--eecccccCCCCeEEEEECHHHHHHhccCCC---------------------ccccCCCCCCHHHHHHHHHH
Confidence 2235775 555988832248999999988776654200 00011124566677777778
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCC-c---------c
Q 010538 343 FNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGS-W---------F 412 (508)
Q Consensus 343 l~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~---------~ 412 (508)
++.+.+ +.+.++++++.+++++.|+++... .++....+ ..+.++++.+.+.+.. . .
T Consensus 315 l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~---~~~~~~~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (429)
T 4e77_A 315 LTEISQ---VGVYETLTELTDSLATGLRHAAKE---ENIPLVVN--------HVGGMFGLFFTNADTVTCYQDVMNCDVE 380 (429)
T ss_dssp HHHHTS---TTHHHHHHHHHHHHHHHHHHHHHH---TTCCCEEE--------EETTEEEEECCSSSCCCSHHHHHTSCHH
T ss_pred HHHHHh---cCHHHHHHHHHHHHHHHHHHHHHh---CCCceEEE--------EeeeEEEEEEccCcccccccccccccHH
Confidence 887643 456677778888888877654100 01111111 1278888888653210 0 0
Q ss_pred CHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHH
Q 010538 413 GYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNR 492 (508)
Q Consensus 413 ~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~ 492 (508)
....+.+.|.++||.++++. ...+|+ +..+|.+|+++++
T Consensus 381 ~~~~~~~~l~~~Gi~v~~~~---------------------------------------~~~~~~--~~~~t~e~i~~~l 419 (429)
T 4e77_A 381 RFKRFFHLMLEEGVYLAPSA---------------------------------------FEAGFM--SLAHSNEDIQKTV 419 (429)
T ss_dssp HHHHHHHHHHHTTEECCSST---------------------------------------TSCEEC--CTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCeEEeecC---------------------------------------CCCEEE--eccCCHHHHHHHH
Confidence 11457788888999988752 233554 5678999999999
Q ss_pred Hhhhhhhh
Q 010538 493 CSSFDFVN 500 (508)
Q Consensus 493 ~~~~~~~~ 500 (508)
+.|+++++
T Consensus 420 ~~l~~~l~ 427 (429)
T 4e77_A 420 NAARRCFA 427 (429)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99998764
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.8e-18 Score=180.70 Aligned_cols=352 Identities=12% Similarity=0.026 Sum_probs=207.3
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..+ .+..+|.+++++.+........... .+.. ....++.+++.+.++++++...+ .|+|++|+
T Consensus 61 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~-~~~~-~~~~~l~~~la~~l~~~~~~~~~--~v~f~~sG 136 (472)
T 1ohv_A 61 DGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRP-ALGI-LPPENFVEKLRESLLSVAPKGMS--QLITMACG 136 (472)
T ss_dssp TSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCC-CTTT-SCBTTHHHHHHHTGGGGCCTTCC--EEEEESSH
T ss_pred CCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhccccccc-cccc-ccHHHHHHHHHHHHHHhCCCCcC--EEEEeCCc
Confidence 6788999854 2445889998886643211111111 1110 11234455555556667765666 89999999
Q ss_pred HHHHHHHHhhcC--------C----------------CCC---CeEEEecccccc-hHHHHHHH-----HhcCCeE---E
Q 010538 113 TAALKLVGEAFP--------W----------------SHQ---SSYMYTMENHNS-VLGIREYA-----LSQGAAA---F 156 (508)
Q Consensus 113 t~al~~~~~~l~--------~----------------~~g---~~vl~~~~~h~s-~~~~~~~~-----~~~G~~v---~ 156 (508)
++|+..++..+. . .+| +.||+.+..|.+ ........ +..|..+ .
T Consensus 137 seA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~ 216 (472)
T 1ohv_A 137 SCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWP 216 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCC
T ss_pred hhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCc
Confidence 999999887652 0 024 678777655544 44333221 1112211 1
Q ss_pred EEccCCc-cCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCc
Q 010538 157 AIDVEEA-VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPE 231 (508)
Q Consensus 157 ~v~~~~~-~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~ 231 (508)
.+++... ...... .-.-...-..|+++++ ++|.+.....+++++|++..++|++|.+.| +++|.++|++
T Consensus 217 ~~~~p~~~~~~~~~--~~~~~~~~~~d~~~l~--~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~-- 290 (472)
T 1ohv_A 217 IAPFPRLKYPLEEF--VKENQQEEARCLEEVE--DLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRK-- 290 (472)
T ss_dssp EECCCCCCSSGGGC--HHHHHHHHHHHHHHHH--HHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHH--
T ss_pred ccCCCcccCccccc--cccchhHHHHHHHHHH--HHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHH--
Confidence 1222110 000000 0000000011567777 555210000127899999989999999888 8888888887
Q ss_pred cccccCCCCCCCeEEEEecccc-CCCCC--CCCCCCC----CcEEEEecccc-ccCCCcceEEEEechhHhhhccccccC
Q 010538 232 RILEISPFSKGRWMVLIDAAKG-CVTQP--PDLSKYP----VDFVVMSFYKI-FGYPTGLGALIMRNDAAKLLKNTYFSG 303 (508)
Q Consensus 232 ~~~~~~~~~~~g~~vivD~a~~-~g~~~--~d~~~~~----~D~~~~S~~K~-~g~P~G~G~l~~~~~~~~~l~~~~~g~ 303 (508)
+|+++|+|++|+ +|... +.+...+ +|++++| |. ++ | |+++ ++++ ..+.+.
T Consensus 291 ----------~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~s--K~~l~---G-G~~~-~~~~-~~~~~~---- 348 (472)
T 1ohv_A 291 ----------HGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFS--KKMMT---G-GFFH-KEEF-RPNAPY---- 348 (472)
T ss_dssp ----------TTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEEEEC--GGGSS---E-EEEE-CGGG-SCSSSS----
T ss_pred ----------hCCEEEEeCcccCCCCCCCchhccccCCCCCCCEEEEc--ccccc---C-CccC-chhh-cccccc----
Confidence 999999999998 45432 2333334 7877555 98 55 4 6665 4443 111111
Q ss_pred ceEEecccchhhhhhccCccccccCCC--CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCce-
Q 010538 304 GTVAASIADIDFVKRRQGVEELFEDGT--ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADV- 380 (508)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~gt--~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~- 380 (508)
...+| .|...+++..++++.+.+ +.+.+++.+++++|++.|+++.. ..++
T Consensus 349 ----------------------~~~~T~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~--~~~~~ 401 (472)
T 1ohv_A 349 ----------------------RIFNTWLGDPSKNLLLAEVINIIKR---EDLLSNAAHAGKVLLTGLLDLQA--RYPQF 401 (472)
T ss_dssp ----------------------SSCCSSSSCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHH--HCTTT
T ss_pred ----------------------cccCccCccHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHh--hCCCc
Confidence 11122 356667777788888766 34678889999999999877510 0011
Q ss_pred EEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCcc
Q 010538 381 CTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVC 460 (508)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 460 (508)
+..+.+ .+.++.|.+.+. .....+.+.|.++||.+.++.
T Consensus 402 v~~~~~---------~g~~~~~~~~~~----~~~~~~~~~l~~~Gv~~~~~g---------------------------- 440 (472)
T 1ohv_A 402 ISRVRG---------RGTFCSFDTPDE----SIRNKLISIARNKGVMLGGCG---------------------------- 440 (472)
T ss_dssp CEEEEE---------ETTEEEEECSSH----HHHHHHHHHHHHTTEECEEET----------------------------
T ss_pred EEeecC---------CceEEEEEeCCh----hHHHHHHHHHHHCCeEEecCC----------------------------
Confidence 221211 167787776431 122357777878999987631
Q ss_pred CCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 461 WDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 461 ~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
.+.||+++++.+|++||+++++.|+++++.
T Consensus 441 -----------~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 470 (472)
T 1ohv_A 441 -----------DKSIRFRPTLVFRDHHAHLFLNIFSDILAD 470 (472)
T ss_dssp -----------TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred -----------CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999987653
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.6e-17 Score=171.20 Aligned_cols=332 Identities=14% Similarity=0.044 Sum_probs=198.9
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..+. +..+|.+++++.+... .. . ...+ ..+..+++.+++++.++ .++ +|+||+|+
T Consensus 55 ~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~-~~--~-~~~~-----~~~~~~~la~~l~~~~~-~~~--~v~~~~gg 122 (453)
T 2cy8_A 55 DGNVYLDFFGGHGALVLGHGHPRVNAAIAEALS-HG--V-QYAA-----SHPLEVRWAERIVAAFP-SIR--KLRFTGSG 122 (453)
T ss_dssp TCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHT-TT--C-SSCS-----SCHHHHHHHHHHHHHCT-TCS--EEEEESCH
T ss_pred CCCEEEECcccHhhcccCCCCHHHHHHHHHHHH-hC--C-CCCC-----CCHHHHHHHHHHHhhCC-CCC--EEEEeCCH
Confidence 55678888544 3357888888766542 21 1 1111 24556777888888886 666 89999999
Q ss_pred HHHHHHHHhh---cCCCCCCeEEEecccccchHH-HHHHHH-------hcCC------eEEEEccCCccCcccccccccc
Q 010538 113 TAALKLVGEA---FPWSHQSSYMYTMENHNSVLG-IREYAL-------SQGA------AAFAIDVEEAVDNDGLSESLVT 175 (508)
Q Consensus 113 t~al~~~~~~---l~~~~g~~vl~~~~~h~s~~~-~~~~~~-------~~G~------~v~~v~~~~~~~~~~l~~~~~~ 175 (508)
++|+.+++.+ + .. ++.||+.+..|++... ...... ..|+ .+..+|.+
T Consensus 123 ~eA~~~al~~ar~~-~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------------- 186 (453)
T 2cy8_A 123 TETTLLALRVARAF-TG-RRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRPD-------------- 186 (453)
T ss_dssp HHHHHHHHHHHHHH-HC-CCEEEEECC----------------------------CGGGEEEECTT--------------
T ss_pred HHHHHHHHHHHHHh-hC-CCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCCC--------------
Confidence 9999999887 5 23 3556666544443222 211110 0122 12222221
Q ss_pred ccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecc
Q 010538 176 STKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAA 251 (508)
Q Consensus 176 ~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a 251 (508)
|+++++ +++++. .+++++|+++.++++||.+.| +++|.++|++ +|+++|+|++
T Consensus 187 ------d~~~le--~~l~~~---~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~------------~g~~lI~DEv 243 (453)
T 2cy8_A 187 ------DIEGMR--EVFANH---GSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQ------------YGALFILDEV 243 (453)
T ss_dssp ------CHHHHH--HHHHHH---GGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHH------------TTCEEEEECT
T ss_pred ------CHHHHH--HHHHhc---CCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHH------------cCCEEEEecC
Confidence 456666 444210 146788988888888999988 8888888887 9999999999
Q ss_pred ccCCCCCCC----C--CCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCcccc
Q 010538 252 KGCVTQPPD----L--SKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEEL 325 (508)
Q Consensus 252 ~~~g~~~~d----~--~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 325 (508)
|+ |. ... + .....|++ |++|++++...+|++++++++++.+.+...+. ...
T Consensus 244 ~~-g~-~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~-------------------~~~ 300 (453)
T 2cy8_A 244 IS-GF-RVGNHGMQALLDVQPDLT--CLAKASAGGLPGGILGGREDVMGVLSRGSDRK-------------------VLH 300 (453)
T ss_dssp TT-TT-TTCTTHHHHHHTCCCSEE--EEEGGGGTTSSCEEEEECHHHHTTSSSCC-------------------------
T ss_pred cc-cc-ccCchhhhHHhCCCCcEE--EEChhhhCCcceEEEechHHHHHHhccccCCC-------------------cee
Confidence 98 33 111 1 11235766 56698883224899999998876665410000 000
Q ss_pred ccCCCCChhHHHHHHHHHHH-HHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEe
Q 010538 326 FEDGTASFLSIASIRHGFNL-INSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNL 404 (508)
Q Consensus 326 ~~~gt~~~~~~~~l~~al~~-~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 404 (508)
....+.|...+++..++++. + . +.+.+++.++++++++.|+++... .+.+..+.+ .+.++++.+
T Consensus 301 ~~t~~~n~~~~aa~~aal~~~~-~---~~~~~~~~~~~~~l~~~L~~~~~~--~~~~~~~~~---------~g~~~~i~~ 365 (453)
T 2cy8_A 301 QGTFTGNPITAAAAIAAIDTIL-E---DDVCAKINDLGQFAREAMNHLFAR--KGLNWLAYG---------RFSGFHLMP 365 (453)
T ss_dssp ---CCCCHHHHHHHHHHHHHHH-H---TTHHHHHHHHHHHHHHHHHHHHHH--TTCCEEEEC---------CTTEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHh-h---hhHHHHHHHHHHHHHHHHHHHHhh--CCCcEEEEE---------eeeEEEEEE
Confidence 01123455666677777876 5 3 456788888899998888764100 011111211 167889988
Q ss_pred eC-----C-------CC---CccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCC
Q 010538 405 KR-----P-------DG---SWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHG 469 (508)
Q Consensus 405 ~~-----~-------~~---~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 469 (508)
++ . +. ......++.+.|.++||.++++
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gv~v~~~-------------------------------------- 407 (453)
T 2cy8_A 366 GLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVDIGGR-------------------------------------- 407 (453)
T ss_dssp TSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHTTEECBTT--------------------------------------
T ss_pred eccccccccccccccccccccHHHHHHHHHHHHHCCeEEeCC--------------------------------------
Confidence 64 1 00 0011345778888899998431
Q ss_pred CCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 470 KPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 470 ~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
+.+|+ +..+|.+|++++++.|+++++.+
T Consensus 408 ---~~~~l--~~~~t~~~i~~~l~~l~~~l~~~ 435 (453)
T 2cy8_A 408 ---GSVFL--SAQHEREHVEHLVTTFDRVLDRL 435 (453)
T ss_dssp ---TEEEC--CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ---CCEEe--eccCCHHHHHHHHHHHHHHHHHH
Confidence 23665 46789999999999999887654
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=5e-18 Score=177.30 Aligned_cols=349 Identities=10% Similarity=0.009 Sum_probs=204.2
Q ss_pred CCCeeeeCCCCC------CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGAT------LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|+.++. ..+|.+++++.+... ... ...+ ......+++++++++++ .++ +|+||+|+
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~-~~~---~~~~-----~~~~~~~l~~~la~~~~-~~~--~v~~~~~G 118 (429)
T 3k28_A 51 DGNEYIDYVLSWGPLIHGHANDRVVEALKAVAE-RGT---SFGA-----PTEIENKLAKLVIERVP-SIE--IVRMVNSG 118 (429)
T ss_dssp TCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHH-HCS---CCSS-----CCHHHHHHHHHHHHHST-TCS--EEEEESSH
T ss_pred CCCEEEECCCChhhcccCCCCHHHHHHHHHHHh-hCc---CcCC-----CCHHHHHHHHHHHHhCC-CCC--EEEEeCCh
Confidence 677899987653 248889888766543 211 1111 12345667888999987 566 89999999
Q ss_pred HHHHHHHHhhcCC-CCCCeEEEeccccc-chHHHHHHHHhcCCeEEEEccCCccCccc-c-ccccccccccccchhhhhc
Q 010538 113 TAALKLVGEAFPW-SHQSSYMYTMENHN-SVLGIREYALSQGAAAFAIDVEEAVDNDG-L-SESLVTSTKISLLPIQRRK 188 (508)
Q Consensus 113 t~al~~~~~~l~~-~~g~~vl~~~~~h~-s~~~~~~~~~~~G~~v~~v~~~~~~~~~~-l-~~~~~~~~~~~~d~~~l~~ 188 (508)
|+|+..++..+.. .+++.|++....|. ....... ..|..+..++......+.. + .+..... -.|+++++
T Consensus 119 sea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~~le- 191 (429)
T 3k28_A 119 TEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLI---KAGSGVATLGLPDSPGVPEGVAKNTITVA---YNDLESVK- 191 (429)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCS---SCCTTC-----CCCTTCCHHHHTTEEEEE---TTCHHHHH-
T ss_pred HHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHH---hcCCcccccCCCCcCCCCCcccCceeecC---CCCHHHHH-
Confidence 9999998877632 35567776654443 3322111 1121111111110000000 0 0000000 00456666
Q ss_pred CCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCC-----C
Q 010538 189 GASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQP-----P 259 (508)
Q Consensus 189 ~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~-----~ 259 (508)
+++.+ ..+++++|++..+++++|.+.| +++|.++|++ +|+++|+|++|.. ... .
T Consensus 192 -~~l~~---~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~------------~~~~li~DEv~~g-~~~g~~~~~ 254 (429)
T 3k28_A 192 -YAFEQ---FGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQ------------NGALLIFDEVMTG-FRVAYNCGQ 254 (429)
T ss_dssp -HHHHH---HGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHH------------HTCEEEEECTTTT-TTSSTTHHH
T ss_pred -HHHHh---CCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHH------------cCCEEEEeccccc-cccCcchHH
Confidence 44421 1246788999988889999999 8999999997 9999999999962 111 0
Q ss_pred CCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHH
Q 010538 260 DLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASI 339 (508)
Q Consensus 260 d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l 339 (508)
+......|+++ ++|.+++...+|++++++++++.+.+.-.. ......+.|...+++.
T Consensus 255 ~~~~~~~di~t--~sK~~~~G~~iG~~~~~~~~~~~~~~~~~~---------------------~~~~t~~~~~~a~aaa 311 (429)
T 3k28_A 255 GYYGVTPDLTC--LGKVIGGGLPVGAYGGKAEIMRQVAPSGPI---------------------YQAGTLSGNPLAMAAG 311 (429)
T ss_dssp HHHTCCCSEEE--ECGGGGTTSCCEEEEECHHHHTTBTTTSSB---------------------CCCCTTTTCHHHHHHH
T ss_pred HHhCCCCceeh--hhhhhcCCCCeEEEEEcHHHHhhhccCCCc---------------------cccCCCCCChHHHHHH
Confidence 01122356655 559887333489999999887766532000 0001123344555555
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCC---------
Q 010538 340 RHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGS--------- 410 (508)
Q Consensus 340 ~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------- 410 (508)
.++++.+ . +++.++++++++++++.|+++... .+.+..+.. .+.++++.+.+....
T Consensus 312 ~aal~~~---~-~~~~~~~~~~~~~l~~~L~~~~~~--~~~~~~~~~---------~g~~~~~~~~~~~~~~~~~~~~~~ 376 (429)
T 3k28_A 312 YETLVQL---T-PESYVEFERKAEMLEAGLRKAAEK--HGIPHHINR---------AGSMIGIFFTDEPVINYDAAKSSN 376 (429)
T ss_dssp HHHHHTC---C-HHHHHHHHHHHHHHHHHHHHHHHH--TTCCCEEEE---------ETTEEEEESSSSCCCSHHHHTTSC
T ss_pred HHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHhh--CCCCEEEEe---------eccEEEEEEecCCccccccccccc
Confidence 5555543 2 778888999999999988764100 011111111 267888877532210
Q ss_pred ccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHH
Q 010538 411 WFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKV 490 (508)
Q Consensus 411 ~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~ 490 (508)
......+.+.|.++||.++++. .+.+|++ +.+|.+|+++
T Consensus 377 ~~~~~~~~~~l~~~Gv~v~~~~---------------------------------------~~~~r~~--~~~t~e~i~~ 415 (429)
T 3k28_A 377 LQFFAAYYREMVEQGVFLPPSQ---------------------------------------FEGLFLS--TVHSDADIEA 415 (429)
T ss_dssp HHHHHHHHHHHHHTTEECCSST---------------------------------------TSCBCCC--TTCCHHHHHH
T ss_pred HHHHHHHHHHHHHCCeEEecCC---------------------------------------CCCEEEE--CCCCHHHHHH
Confidence 0012457778888999988742 3457875 4679999999
Q ss_pred HHHhhhhhhhhh
Q 010538 491 NRCSSFDFVNFS 502 (508)
Q Consensus 491 l~~~~~~~~~~~ 502 (508)
++++|+++++.+
T Consensus 416 ~l~~l~~~l~~~ 427 (429)
T 3k28_A 416 TIAAAEIAMSKL 427 (429)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHH
Confidence 999999887643
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=9.3e-18 Score=174.33 Aligned_cols=330 Identities=12% Similarity=0.048 Sum_probs=203.5
Q ss_pred hhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHH-HHHhhcC--CCCCCeEEEecccccchHHHHHHHHhcCCeEEE
Q 010538 81 ATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALK-LVGEAFP--WSHQSSYMYTMENHNSVLGIREYALSQGAAAFA 157 (508)
Q Consensus 81 ~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~-~~~~~l~--~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~ 157 (508)
......+.+..++.+++|.+... ...+++|+|.+.+ +++.+.. ..+++.|+++...|.|+...+.++ |+..+.
T Consensus 95 ~~~~~e~~~~~~~~~~lGlp~~~-~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~---Gl~p~~ 170 (450)
T 3bc8_A 95 LLNKITNSLVLNVIKLAGVHSVA-SCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTA---GFEPVV 170 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCC-EEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHT---TCEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCCc-eEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHc---CCeeEE
Confidence 34566778889999999997652 5688899885444 4444432 113688999999999998877765 999888
Q ss_pred Ecc---CCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCcccc
Q 010538 158 IDV---EEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERIL 234 (508)
Q Consensus 158 v~~---~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~ 234 (508)
|+. +..+.+ |+++++ ++|++.. .+.+.+|+.+..++.+|.+.|+++|.++||+
T Consensus 171 v~~~~~~~~~~i---------------d~~~le--~aI~~~~--~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~----- 226 (450)
T 3bc8_A 171 IENVLEGDELRT---------------DLKAVE--AKIQELG--PEHILCLHSTTACFAPRVPDRLEELAVICAN----- 226 (450)
T ss_dssp ECCEEETTEEEC---------------CHHHHH--HHHHHHC--GGGEEEEEEESSCCTTBCCCCHHHHHHHHHH-----
T ss_pred EEeeecCccCCc---------------CHHHHH--HHHHhcC--CCCEEEEEEECCcCCCceecCHHHHHHHHHH-----
Confidence 865 333444 788888 7775421 1245566666555556799999999999998
Q ss_pred ccCCCCCCCeEEEEeccccCCCCCCC-C--C--C-CCCcEEEEeccccccCCCcceEEEEec-hhHhhhccccccCceEE
Q 010538 235 EISPFSKGRWMVLIDAAKGCVTQPPD-L--S--K-YPVDFVVMSFYKIFGYPTGLGALIMRN-DAAKLLKNTYFSGGTVA 307 (508)
Q Consensus 235 ~~~~~~~~g~~vivD~a~~~g~~~~d-~--~--~-~~~D~~~~S~~K~~g~P~G~G~l~~~~-~~~~~l~~~~~g~~~~~ 307 (508)
+|++++||+||+.-..... + . + .++|+++.|+|||+..|.|.+++++++ +.++.+...+.+.
T Consensus 227 -------~gi~l~VD~A~G~~~~~~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~~~~g~---- 295 (450)
T 3bc8_A 227 -------YDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGR---- 295 (450)
T ss_dssp -------HTCCEEEECTTTTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSCSC----
T ss_pred -------CCCeEEEECCCchhhhhhHhHHHHHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHHHHHhhcC----
Confidence 9999999999985332211 1 1 1 268999999999988899999999864 3443333322111
Q ss_pred ecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCC
Q 010538 308 ASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTY 387 (508)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~ 387 (508)
..++| .+.++.++..+...++.+..++..++++++++.|+++.. .-+.++++.+
T Consensus 296 -------------------~s~Sp----sL~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~~---~~g~~~l~~~ 349 (450)
T 3bc8_A 296 -------------------ASASP----SLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAE---AHNERLLQTP 349 (450)
T ss_dssp -------------------BCSHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTCCBCCCT
T ss_pred -------------------CcccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---hcCceecCCc
Confidence 11111 133444444334556777888889999999999987720 0045666543
Q ss_pred CCCcccCCCCceEEEEeeCCC-CCccCHHHHHHHHhhCC---Ceecc-CCCCCchHHHhhcCCChhhhhhhhhcCCccCC
Q 010538 388 TSEVSYHDTGSMVSFNLKRPD-GSWFGYREVEKLASLSG---IQLRT-GCFCNPGACAKYLGLSHSDLLSNIEAGHVCWD 462 (508)
Q Consensus 388 ~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~l~~~L~~~g---I~v~~-g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 462 (508)
.. +.-..+.+.... ....+..++.-.+...| ..+.+ |.. +.++ . +.++.+|...+
T Consensus 350 ~~-------~~~~~~~l~~~~~~~~~D~tkl~i~~~~~g~sG~~v~~~~~~-------~~~~--~-~~l~~~gi~~E--- 409 (450)
T 3bc8_A 350 HN-------PISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNV-------QTVS--G-HTFRGFMSHAD--- 409 (450)
T ss_dssp TC-------SSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCE-------EEET--T-EEEETTTTTSS---
T ss_pred cC-------CCcceeecccccccccCCCceeEEEecCCCCccceeeecccc-------cchh--H-HHHHHcCCeee---
Confidence 21 111223333211 11134445555554444 33321 000 0000 0 11122222211
Q ss_pred CccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 463 DNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 463 ~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
-....+|=+.++..+|.+|+++|+++|+++.+.
T Consensus 410 ------~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~ 442 (450)
T 3bc8_A 410 ------NYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNI 442 (450)
T ss_dssp ------CCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ------cCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 123578999999999999999999999998653
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-17 Score=170.67 Aligned_cols=330 Identities=15% Similarity=0.063 Sum_probs=202.1
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..+. +..+|.+++++.+... .. ....+ ......++.+.++++++ .++ +|+|++|+
T Consensus 50 ~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~---~~~~~-----~~~~~~~l~~~l~~~~~-~~~--~v~~~~~g 117 (424)
T 2e7u_A 50 DGNRYLDYVMSWGPLILGHAHPKVLARVRETLE-RG---LTFGA-----PSPLEVALAKKVKRAYP-FVD--LVRFVNSG 117 (424)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHH-TC---SCCSS-----CCHHHHHHHHHHHHHCT-TCC--EEEEESSH
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHH-hC---CCCCC-----CCHHHHHHHHHHHHhCC-CCC--EEEEeCCH
Confidence 56678887643 4457888888766543 21 11111 23456778889999986 566 89999999
Q ss_pred HHHHHHHHhh---cCCCCCCeEEEecccccch-HHHHHHHH----------hcCC------eEEEEccCCccCccccccc
Q 010538 113 TAALKLVGEA---FPWSHQSSYMYTMENHNSV-LGIREYAL----------SQGA------AAFAIDVEEAVDNDGLSES 172 (508)
Q Consensus 113 t~al~~~~~~---l~~~~g~~vl~~~~~h~s~-~~~~~~~~----------~~G~------~v~~v~~~~~~~~~~l~~~ 172 (508)
++|+.+++.. + .+++.||+.+..|++. ........ ..|+ .+..+|..
T Consensus 118 ~ea~~~al~~ar~~--~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~----------- 184 (424)
T 2e7u_A 118 TEATMSALRLARGY--TGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYN----------- 184 (424)
T ss_dssp HHHHHHHHHHHHHH--HCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECTT-----------
T ss_pred HHHHHHHHHHHHHh--hCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCCC-----------
Confidence 9999998875 4 2345566665444432 21111000 0121 23333321
Q ss_pred cccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEE
Q 010538 173 LVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLI 248 (508)
Q Consensus 173 ~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~viv 248 (508)
|+++++ +.+++. .+++++|+++.+++++|.+.| +++|.++ ++ +|+++|+
T Consensus 185 ---------d~~~le--~~l~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~------------~g~~lI~ 237 (424)
T 2e7u_A 185 ---------DPEGLR--EVLKRR---GEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KA------------YGVLLIA 237 (424)
T ss_dssp ---------CHHHHH--HHHHHH---GGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GG------------GTCEEEE
T ss_pred ---------CHHHHH--HHHHhC---CCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HH------------cCCEEEE
Confidence 355666 444210 146788888777777999887 7778877 76 9999999
Q ss_pred eccccCCCCC---C--CCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCcc
Q 010538 249 DAAKGCVTQP---P--DLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 249 D~a~~~g~~~---~--d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
|++|+ |... . +......|++ |++|++++.-.+|++++++++++.+.+.. . .
T Consensus 238 DEv~~-g~~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~~~~~~~~~~~~~~~~--~-------------------~ 293 (424)
T 2e7u_A 238 DEVMT-GFRLAFGGATELLGLKPDLV--TLGKILGGGLPAAAYAGRREIMEKVAPLG--P-------------------V 293 (424)
T ss_dssp ECTTT-TTTSSTTHHHHHHTCCCSEE--EECGGGGTTSSCEEEEECHHHHTTBTTTS--S-------------------B
T ss_pred ecCcc-ccccchhHHHHHhCCCcchh--hhhhhhhCCcceEEEEEcHHHHhhhcccC--C-------------------c
Confidence 99998 3311 0 0111235765 66799883113799999998877665420 0 0
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEE
Q 010538 324 ELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFN 403 (508)
Q Consensus 324 ~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 403 (508)
......+.|...+++..++++.+.+ .+++.+++.++++++++.|+++... .+....+.+ .+.++++.
T Consensus 294 ~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~--~~~~~~~~~---------~g~~~~i~ 360 (424)
T 2e7u_A 294 YQAGTLSGNPLAMAAGLATLELLEE--NPGYYAYLEDLGARLEAGLKEVLKE--KGLPHTVNR---------VGSMITVF 360 (424)
T ss_dssp CCCCTTCSCHHHHHHHHHHHHHHHH--CTHHHHHHHHHHHHHHHHHHHHHHH--TTCCCEEEE---------ETTEEEEE
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHh--CCCceEEEe---------eceEEEEE
Confidence 0001123455667777778887765 2678899999999999998765100 011111111 16788888
Q ss_pred eeCCCC---------CccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCce
Q 010538 404 LKRPDG---------SWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGA 474 (508)
Q Consensus 404 ~~~~~~---------~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (508)
+.+... ......++.+.|.++||.++++. ...
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------------------------------------~~~ 401 (424)
T 2e7u_A 361 FTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSN---------------------------------------FEA 401 (424)
T ss_dssp SSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSSS---------------------------------------SSC
T ss_pred EeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEeccC---------------------------------------CCc
Confidence 864110 00112357778888999998752 123
Q ss_pred EEEecCCCCCHHHHHHHHHhhhhh
Q 010538 475 IRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 475 iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
+|++ ..+|.+|+++++++|++.
T Consensus 402 ~~~~--~~~t~~~i~~~l~~l~~~ 423 (424)
T 2e7u_A 402 AFLS--VAHREEDVEKTLEALRKA 423 (424)
T ss_dssp EECC--TTCCHHHHHHHHHHHHHH
T ss_pred eEee--ccCCHHHHHHHHHHHHHh
Confidence 5554 678999999999998865
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.9e-17 Score=170.00 Aligned_cols=357 Identities=12% Similarity=0.009 Sum_probs=204.1
Q ss_pred chHHHHHHhhccCCCCCe------eeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc-
Q 010538 25 SIDQIRATEFKRLENGTV------YLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF- 97 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~~~i------yld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~- 97 (508)
.+-.+-+ .|.....+.| |.|..+.+++.+.|.++. ....... .. ..|.+..+ ..+.|+.+++++
T Consensus 31 ~i~~l~~-~~~~d~~~kinLgvG~y~d~~g~~~vl~~Vk~A~-~~~~~~~--~~-~~Y~p~~G----~p~lr~aia~~~~ 101 (420)
T 4h51_A 31 VIFDLAK-RAAAAKGPKANLVIGAYRDEQGRPYPLRVVRKAE-QLLLDMN--LD-YEYLPISG----YQPFIDEAVKIIY 101 (420)
T ss_dssp HHHHHHH-HHHHCCSSCEECCSCCCBCTTSCBCCCHHHHHHH-HHHHHTT--CC-CCCCCTTC----CHHHHHHHHHHHH
T ss_pred hHHHHHH-HHhcCCCCCEEeecCcccCCCCCCCCCHHHHHHH-HHHhcCC--CC-CCCCCcCC----hHHHHHHHHHHhc
Confidence 4555655 5654423344 556566677778777665 3333221 11 12222222 345566666654
Q ss_pred CC--CCCCceEEEcCChHHHHHHHHhhcC---CCCCCeEEEecccccchHHHHHHHHhcCCe-EEEEccCCccCcccccc
Q 010538 98 NA--SMKDYKCIFTSGATAALKLVGEAFP---WSHQSSYMYTMENHNSVLGIREYALSQGAA-AFAIDVEEAVDNDGLSE 171 (508)
Q Consensus 98 ~~--~~~~~~i~~t~g~t~al~~~~~~l~---~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~-v~~v~~~~~~~~~~l~~ 171 (508)
|- +.+....+-|.|+|.|+..++..+. ..+|++|++++..++++....+. .|.+ |...+.......
T Consensus 102 g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~---aG~~~V~~~~~~~~~~~----- 173 (420)
T 4h51_A 102 GNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKA---AGWKNICTYAYYDPKTV----- 173 (420)
T ss_dssp C---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHH---TTCCCEEEEECEEGGGT-----
T ss_pred CCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHH---cCCeEEEeecccccccc-----
Confidence 32 2221123457888888766554432 46899999999888887766554 4776 444444322111
Q ss_pred ccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEecc
Q 010538 172 SLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAA 251 (508)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a 251 (508)
.+|.+.+. +.+. ...++++++..+.++||||..++.+++.++++ +|++++++++.|.+
T Consensus 174 --------~~d~~~~~--~~l~---~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~---------~~~~~~~~~~~D~~ 231 (420)
T 4h51_A 174 --------SLNFEGMK--KDIL---AAPDGSVFILHQCAHNPTGVDPSQEQWNEIAS---------LMLAKHHQVFFDSA 231 (420)
T ss_dssp --------EECHHHHH--HHHH---HSCSSCEEEEESSSCTTTCCCCCHHHHHHHHH---------HHHHHTCEEEEEES
T ss_pred --------CCCHHHHH--HHHh---ccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH---------HHHhcCceEeeehh
Confidence 01333433 2221 12567899999999999999999998888877 56679999999998
Q ss_pred ccC-CCCCCCC---------CCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhc
Q 010538 252 KGC-VTQPPDL---------SKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRR 319 (508)
Q Consensus 252 ~~~-g~~~~d~---------~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~ 319 (508)
+.. .....+. .....-+++.|++|.|+ .+| +|++++..+..+........- .
T Consensus 232 Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~-~~G~RvG~~~~~~~~~~~~~~~~~~l------------~--- 295 (420)
T 4h51_A 232 YQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMG-LYSERAGTLSLLLKDKTKRADVKSVM------------D--- 295 (420)
T ss_dssp CTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSC-CGGGCEEEEEEECSCHHHHHHHHHHH------------H---
T ss_pred hhhhccCCcccchHHHHhHHhhCceEEEEeccccccc-cccCceEEEEecccCHHHHHHHHHHH------------H---
Confidence 753 2111110 11123478889999999 667 899998766544332211000 0
Q ss_pred cCccccccCCCCChhHHHHHHHHHH------HHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCccc
Q 010538 320 QGVEELFEDGTASFLSIASIRHGFN------LINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSY 393 (508)
Q Consensus 320 ~~~~~~~~~gt~~~~~~~~l~~al~------~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~ 393 (508)
. ..+.....++..+.......+. .+.+ .++.+++++.++++.|.+.|+++.. ...+..+.++.
T Consensus 296 -~-~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~-~~~~m~~r~~~~R~~l~~~L~~~g~---~~~~~~i~~q~----- 364 (420)
T 4h51_A 296 -S-LIREEYTCPPAHGARLAHLILSNNELRKEWEA-ELSAMAERIRTMRRTVYDELLRLQT---PGSWEHVINQI----- 364 (420)
T ss_dssp -H-HHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTC---SSCCTHHHHCC-----
T ss_pred -H-hhhcccCcchHHHHHHHHHHhcCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCC---CCCCCeecCCC-----
Confidence 0 1111122333333333332222 1111 2678889999999999999988621 00122222321
Q ss_pred CCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCc
Q 010538 394 HDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTG 473 (508)
Q Consensus 394 ~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (508)
+.+.+. +. +. +..++|+++||.+.+ .|
T Consensus 365 ---GmF~~~---gl-----s~-e~v~~L~e~~Vy~~~-----------------------------------------~g 391 (420)
T 4h51_A 365 ---GMFSFL---GL-----SK-AQCEYCQNHNIFITV-----------------------------------------SG 391 (420)
T ss_dssp ---SSEEEC---CC-----CH-HHHHHHHHTTEECCT-----------------------------------------TC
T ss_pred ---ceEEec---Cc-----CH-HHHHHHHhCCEEEcC-----------------------------------------CC
Confidence 444332 22 22 245788899998654 23
Q ss_pred eEEEecCCCCCHHHHHHHHHhhhhhhhhhh
Q 010538 474 AIRVSFGYMSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 474 ~iRis~~~~~t~eev~~l~~~~~~~~~~~~ 503 (508)
|||+.. .|.++|++++++|.+.++.++
T Consensus 392 --Ris~Ag-l~~~ni~~~a~aI~~vvr~i~ 418 (420)
T 4h51_A 392 --RANMAG-LTHETALMLAQTINDAVRNVN 418 (420)
T ss_dssp --EEEGGG-CCHHHHHHHHHHHHHHHC---
T ss_pred --EEEecc-CCHHHHHHHHHHHHHHHHHhh
Confidence 999874 478999999999999887664
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=8.3e-16 Score=157.94 Aligned_cols=323 Identities=12% Similarity=0.043 Sum_probs=203.6
Q ss_pred HHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCC---CCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccC
Q 010538 89 AREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWS---HQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVD 165 (508)
Q Consensus 89 ~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~---~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~ 165 (508)
+..++..+ |.+... ...+++|+|.++.+++.+...+ +++.||++...|-|++..+.++ |+++++|+...+..
T Consensus 122 ~ld~L~~~-G~~~~~-~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~---Gl~Pv~V~p~~d~~ 196 (501)
T 3hl2_A 122 VLDIIKLA-GVHTVA-NCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITA---GFEPVVIENVLEGD 196 (501)
T ss_dssp HHHHHHHT-TCTTCC-EEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHT---TCEEEEECEEEETT
T ss_pred HHHHHHHc-CCCCCC-cEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHc---CCeEEEEeeeeccc
Confidence 44555555 887642 6888899997766555544222 3589999999999998887765 99999997632111
Q ss_pred ccccccccccccccccchhhhhcCCCCCCCCCCC-CCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCe
Q 010538 166 NDGLSESLVTSTKISLLPIQRRKGASFPERDPAG-DAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRW 244 (508)
Q Consensus 166 ~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~-~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~ 244 (508)
.+..|+++++ ++|++. + +...+|+.+..++..|...|+++|.++||+ +|+
T Consensus 197 ------------~~~id~e~le--~aI~e~---ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~------------~gI 247 (501)
T 3hl2_A 197 ------------ELRTDLKAVE--AKVQEL---GPDCILCIHSTTSCFAPRVPDRLEELAVICAN------------YDI 247 (501)
T ss_dssp ------------EEEECHHHHH--HHHHHH---CGGGEEEEEEECSCCTTBCCCCHHHHHHHHHH------------HTC
T ss_pred ------------ccCCCHHHHH--HHHHhc---CCCcEEEEEecCCCCCCcccccHHHHHHHHHH------------cCC
Confidence 1122788888 777542 2 233444444444545677999999999998 999
Q ss_pred EEEEeccccCCCCCC-----CCCCCC-CcEEEEeccccccCCCcceEEEEec-hhHhhhccccccCceEEecccchhhhh
Q 010538 245 MVLIDAAKGCVTQPP-----DLSKYP-VDFVVMSFYKIFGYPTGLGALIMRN-DAAKLLKNTYFSGGTVAASIADIDFVK 317 (508)
Q Consensus 245 ~vivD~a~~~g~~~~-----d~~~~~-~D~~~~S~~K~~g~P~G~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~ 317 (508)
+++||+||+.-.... ..-+.+ +|+++.|.||++-.|-|.|+++.++ ++++++...+.
T Consensus 248 pllVDeAhGah~~~~~~lp~sA~~~GrAD~vVqS~HK~llvpIGG~ii~~~d~e~l~~~~~~yP---------------- 311 (501)
T 3hl2_A 248 PHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYP---------------- 311 (501)
T ss_dssp CEEEECTTCTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHHTSC----------------
T ss_pred eEEEeCcchhhhhhhhhhHHHHHhcCCCcEEEecccccceeecCceEEEeCCHHHHHHHHHhCC----------------
Confidence 999999997633211 111235 9999999999777687755665654 45554433322
Q ss_pred hccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCC
Q 010538 318 RRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTG 397 (508)
Q Consensus 318 ~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (508)
|+.+....+.+..++..+...|+.++.++..++.++|++.|+++.. .-+-+++..+. ..
T Consensus 312 -----------Gr~S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~la~---~~ge~ll~~~~-------n~ 370 (501)
T 3hl2_A 312 -----------GRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSE---AYNERLLHTPH-------NP 370 (501)
T ss_dssp -----------SCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTTCCBCCCTT-------CS
T ss_pred -----------CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcChhhcCCCC-------Cc
Confidence 3334445666667777777888999999999999999999998642 11233443321 13
Q ss_pred ceEEEEeeCCCCCc-cCHHHHHHHHhhCCCe---e-ccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCC
Q 010538 398 SMVSFNLKRPDGSW-FGYREVEKLASLSGIQ---L-RTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPT 472 (508)
Q Consensus 398 ~~v~~~~~~~~~~~-~~~~~l~~~L~~~gI~---v-~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 472 (508)
--+.+.+....... -....+-..|-.++|. | .+|..-. -.++. -..+|.++ ..+..
T Consensus 371 is~a~tl~~~~~~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~-i~g~~---------f~~~g~h~---------~~~~~ 431 (501)
T 3hl2_A 371 ISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQT-VSGYT---------FRGFMSHT---------NNYPC 431 (501)
T ss_dssp SEEEEECTTSCTTTSCHHHHHHHHHHHTTCCSCEEECTTCCEE-ETTEE---------ESSTTTTS---------SCCSS
T ss_pred eeEEEecccccccccccHHHHHHHHHhcCCCcceeecCCCceE-ECCee---------ecCcccCC---------CCCCc
Confidence 34555554432211 1223466677666553 2 2222000 00000 11222211 12346
Q ss_pred ceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 473 GAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 473 ~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
.++-++...-.+.+|||.+++.|.+.+.-
T Consensus 432 ~yl~~a~aiG~~~~~v~~~~~~l~~~~~~ 460 (501)
T 3hl2_A 432 AYLNAASAIGMKMQDVDLFIKRLDRCLKA 460 (501)
T ss_dssp CEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999987643
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-16 Score=166.71 Aligned_cols=334 Identities=13% Similarity=0.053 Sum_probs=200.6
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+. +-.+|.+++++.++.. ... ...+ ......++.++++++++ ..+ .++|++|+
T Consensus 98 dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~-~~~---~~~~-----~~~~~~~Lae~L~~~~p-~~~--~v~~~nSG 165 (465)
T 2yky_A 98 DGHAYVNFLGEYTAGLFGHSHPVIRAAVERALA-VGL---NLST-----QTENEALFAEAVCDRFP-SID--LVRFTNSG 165 (465)
Confidence 55668887542 2236778877755432 210 1111 23445667888888885 345 79999999
Q ss_pred HHHHHHHHhhcC-CCCCCeEEEecccccc-hHHHHHHHHhcCC--eEEEEccCCccCccccccccccccccccchhhhhc
Q 010538 113 TAALKLVGEAFP-WSHQSSYMYTMENHNS-VLGIREYALSQGA--AAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRK 188 (508)
Q Consensus 113 t~al~~~~~~l~-~~~g~~vl~~~~~h~s-~~~~~~~~~~~G~--~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~ 188 (508)
++|+..++.... ..+++.||+.+..|.+ ......-....|+ .+..+|.+ |+++++
T Consensus 166 seA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~~--------------------d~~~l~- 224 (465)
T 2yky_A 166 TEANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVYN--------------------DVEGTA- 224 (465)
Confidence 999999987653 3455777776644432 2222200011233 22223321 355666
Q ss_pred CCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCC--CCCC
Q 010538 189 GASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQP--PDLS 262 (508)
Q Consensus 189 ~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~--~d~~ 262 (508)
+++++. .+++++|++..+++++|.+.| +++|.++|++ +|+++|+|++|+ +... ....
T Consensus 225 -~~l~~~---~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~------------~g~llI~DEv~~-~r~g~~~a~~ 287 (465)
T 2yky_A 225 -DLLKRH---GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASR------------CGALLIFDEVMT-SRLSGGGAQE 287 (465)
Confidence 565321 257889998887778998887 6777777776 999999999998 4211 1111
Q ss_pred C--CCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHH
Q 010538 263 K--YPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIAS 338 (508)
Q Consensus 263 ~--~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~ 338 (508)
. ...|++ +++|++| + | +|++++++++++.+.+...+.. ......+.|...+++
T Consensus 288 ~~gv~pDi~--t~sK~lg-~-G~piG~v~~~~~i~~~l~~~~~g~~-------------------~~~~T~~~npla~aA 344 (465)
T 2yky_A 288 MLGISADLT--TLGKYIG-G-GMSFGAFGGRRDLMERFDPARDGAF-------------------AHAGTFNNNILTMSA 344 (465)
Confidence 1 235655 5679998 4 4 7999999998776665200100 000011234445556
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCC--C-------
Q 010538 339 IRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPD--G------- 409 (508)
Q Consensus 339 l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~------- 409 (508)
..++++.+.+ +.+.+++.++.+++++.|+++.. ...+..... ..+.++++.+.+.+ .
T Consensus 345 a~aaL~~l~~---~~~~~~~~~~~~~l~~~L~~~~~-----~~~~~~~v~------g~G~~~~i~~~~~~~~~~~~~~~~ 410 (465)
T 2yky_A 345 GHAALTQIYT---RQAASDLSASGDRFRANLNRIAV-----ENQAPLQFT------GLGSLGTIHFSRAPIRSAGDVRAA 410 (465)
Confidence 6667887655 45778889999999999877621 112211111 12778888775310 0
Q ss_pred CccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHH
Q 010538 410 SWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAK 489 (508)
Q Consensus 410 ~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~ 489 (508)
..-....+.+.|.++||.+.++. .+. +++.+|++|++
T Consensus 411 d~~~~~~~~~~ll~~GV~v~p~~---------------------------------------~~~----~s~~~t~edid 447 (465)
T 2yky_A 411 DQQLKELFFFHMLRKGIYLAPRG---------------------------------------MYA----LSLEIADAGRD 447 (465)
Confidence 00002346777778999987642 011 55568999999
Q ss_pred HHHHhhhhhhhhh
Q 010538 490 VNRCSSFDFVNFS 502 (508)
Q Consensus 490 ~l~~~~~~~~~~~ 502 (508)
++++++.++++.+
T Consensus 448 ~~l~~l~~~l~~~ 460 (465)
T 2yky_A 448 AFAEALADFIGEQ 460 (465)
Confidence 9999999887654
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.1e-12 Score=135.09 Aligned_cols=334 Identities=15% Similarity=0.109 Sum_probs=196.7
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+. +--+|.+++++.++... .. . ..... ....++.+.+++.+.. .+ .+.|++++
T Consensus 85 dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~-~~-~-~~~~~------~~~~~lae~l~~~~p~-~~--~v~f~~SG 152 (454)
T 4ao9_A 85 DGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQG-GI-N-LTGHN------LLEGRLARLICERFPQ-IE--QLRFTNSG 152 (454)
T ss_dssp TCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHT-CS-C-CCSEE------SSHHHHHHHHHHHSTT-CS--EEEEESSH
T ss_pred CCCEEEEccccHHhhcccCCCHHHHHHHHHHHhc-CC-C-ccCCc------HHHHHHHHHHHHhCCC-CC--EEEEeCch
Confidence 78889998542 44589999988665532 11 1 11111 1133456778887763 44 79999999
Q ss_pred HHHHHHHHhhcC-CCCCCeEEEecccccc-hHHHHHHH--HhcCCeEEEEccCCccCccccccccccccccccchhhhhc
Q 010538 113 TAALKLVGEAFP-WSHQSSYMYTMENHNS-VLGIREYA--LSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRK 188 (508)
Q Consensus 113 t~al~~~~~~l~-~~~g~~vl~~~~~h~s-~~~~~~~~--~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~ 188 (508)
|+|++.++.... ..+.+.|+.....|-. .......- .........+|.+ |++.++
T Consensus 153 sEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~n--------------------d~~~l~- 211 (454)
T 4ao9_A 153 TEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYN--------------------DAQTAR- 211 (454)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTT--------------------CHHHHH-
T ss_pred HHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCCc--------------------hHHHHH-
Confidence 999998876542 2344667666544322 11110000 0001223333332 234444
Q ss_pred CCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCC---
Q 010538 189 GASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDL--- 261 (508)
Q Consensus 189 ~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~--- 261 (508)
+.+++ ..+++..|++..+....|.+.| +++|.++|++ +|+++|+|++++ |..-.-.
T Consensus 212 -~~l~~---~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~------------~g~lLI~DEV~t-GR~G~~~a~e 274 (454)
T 4ao9_A 212 -AQIER---HGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQ------------VGALLVFDEVMT-SRLAPHGLAN 274 (454)
T ss_dssp -HHHHH---TGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHH------------HTCEEEEECTTG-GGGSTTCHHH
T ss_pred -HHHhh---cCCceEEEEeccccCCCCccCCchhhHHHHHHHHhh------------cCCEEEEECCCc-CCCccccchh
Confidence 33322 2457889999999999999998 7788888887 999999999997 3211111
Q ss_pred -CCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCC--ChhHHHH
Q 010538 262 -SKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTA--SFLSIAS 338 (508)
Q Consensus 262 -~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~--~~~~~~~ 338 (508)
-....|+++++ |.+|+-..+|.+.++++..+.+.|..- ..+..+|. |...+++
T Consensus 275 ~~gv~PDi~t~g--K~lggG~Piga~~~~~ei~~~~~~~~~----------------------~~~h~~T~~gnPla~AA 330 (454)
T 4ao9_A 275 KLGIRSDLTTLG--KYIGGGMSFGAFGGRADVMALFDPRTG----------------------PLAHSGTFNNNVMTMAA 330 (454)
T ss_dssp HHTCCCSEEEEE--GGGGTTSSCEEEEECHHHHGGGCTTTC----------------------SCCCCCTTTTCHHHHHH
T ss_pred ccCCCCcEEEec--cccCCCCcceeeeeHHHHHHHHhhccC----------------------CccccCCCCCCHHHHHH
Confidence 01236998877 866632238999999999876654310 01123333 3445555
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCC------cc
Q 010538 339 IRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGS------WF 412 (508)
Q Consensus 339 l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~ 412 (508)
..++|+.+.+ +++.+++.++.++|++.|+++....+.+ ..+.+ .+.++.+.+.+.+.. ..
T Consensus 331 ala~L~~l~~---~~~~~~~~~~g~~l~~~L~~l~~~~~~~-~~vrg----------~G~m~gi~f~~~~~~~~~~~~~~ 396 (454)
T 4ao9_A 331 GYAGLTKLFT---PEAAGALAERGEALRARLNALCANEGVA-MQFTG----------IGSLMNAHFVQGDVRSSEDLAAV 396 (454)
T ss_dssp HHHHHHHTSC---HHHHHHHHHHHHHHHHHHHHHHHHHTBS-CEEEE----------ETTEEEEESCCSCCCSGGGGTTC
T ss_pred HHHHHHHHhc---cChhHHHHHHHHHHHHHHHHHHhhCCCC-EEEee----------eceEEEEEEecCCCCCHHHHHhh
Confidence 5566666543 6778888899999998887642100000 11211 256666665332111 01
Q ss_pred CH---HHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHH
Q 010538 413 GY---REVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAK 489 (508)
Q Consensus 413 ~~---~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~ 489 (508)
+. ..+...+.++||.+.+. +.+.+ ..-+|++|||
T Consensus 397 d~~~~~~~~~~ll~~Gv~~~p~-----------------------------------------~~~~~--s~~~T~~dId 433 (454)
T 4ao9_A 397 DGRLRQLLFFHLLNEDIYSSPR-----------------------------------------GFVVL--SLPLTDADID 433 (454)
T ss_dssp CHHHHHHHHHHHHHTTEECCTT-----------------------------------------CEEEC--CTTCCHHHHH
T ss_pred hHHHHHHHHHHHHHCCEEEcCC-----------------------------------------CCEEE--eCCCCHHHHH
Confidence 11 23455667889987652 33444 4447999999
Q ss_pred HHHHhhhhhhhhhh
Q 010538 490 VNRCSSFDFVNFSQ 503 (508)
Q Consensus 490 ~l~~~~~~~~~~~~ 503 (508)
++++++++++.-..
T Consensus 434 ~~l~al~~~l~~~~ 447 (454)
T 4ao9_A 434 RYVAAIGSFIGGHG 447 (454)
T ss_dssp HHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999886543
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-10 Score=121.87 Aligned_cols=359 Identities=11% Similarity=0.036 Sum_probs=206.3
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC-CCCceEEEcCC
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS-MKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~~~i~~t~g 111 (508)
++..|||..+ .|--+|.+++++.++.. .... ...... ..+...++.+++++++..+ .+ .+.|+++
T Consensus 62 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~-~~~~-~~~~~~----~~~~~~~lae~L~~~~p~~~~~--~v~f~~s 133 (456)
T 4atq_A 62 DGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAA-HFTH-TCFMVT----PYEGYVAVTEQLNRLTPGDHAK--RTVLFNS 133 (456)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHH-HCSC-CTTTTS----CCHHHHHHHHHHHHHSSCSSCE--EEEEESS
T ss_pred CCCEEEEccccHHHHhcCCCCHHHHHHHHHHHh-hccC-cccCcc----CcHHHHHHHHHHHHhCCCCCCc--EEEEeCC
Confidence 7788999743 34558999988766443 2211 111111 1122334556778887654 34 7899999
Q ss_pred hHHHHHHHHhhcC-CCCCCeEEEeccccc-chHHHHHHHHh-------c---CCeEEEEccCCccC--cccccccccccc
Q 010538 112 ATAALKLVGEAFP-WSHQSSYMYTMENHN-SVLGIREYALS-------Q---GAAAFAIDVEEAVD--NDGLSESLVTST 177 (508)
Q Consensus 112 ~t~al~~~~~~l~-~~~g~~vl~~~~~h~-s~~~~~~~~~~-------~---G~~v~~v~~~~~~~--~~~l~~~~~~~~ 177 (508)
+|+|+..++.... ..+...|+.....|- ........... . ...+..+|...... ..+. ....
T Consensus 134 GsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~----~~~~ 209 (456)
T 4atq_A 134 GAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEI----TGAE 209 (456)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTC----CHHH
T ss_pred hHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcc----cHHH
Confidence 9999988775532 234566776654443 33333221100 0 12345555431100 0000 0000
Q ss_pred ccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecccc
Q 010538 178 KISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKG 253 (508)
Q Consensus 178 ~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~ 253 (508)
......+.++ ..+ ..+++..|++.-+....|.+.| ++.+.++|++ ||+++|+|++|+
T Consensus 210 ~~~~~~~~~e--~~~-----~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~------------~gillI~DEV~t 270 (456)
T 4atq_A 210 AAKRAITMIE--KQI-----GGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKE------------KGIVFIADEVQS 270 (456)
T ss_dssp HHHHHHHHHH--HHT-----CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHH------------HTCEEEEECTTT
T ss_pred HHHHHHHHHH--Hhh-----cCCceEEEEeccccCCCCccccchhhhHHHHHHHhh------------cCCceEeccccc
Confidence 0011122233 111 2356888999888888898887 5677777776 999999999987
Q ss_pred C-CCCCC--CCC--CCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccC
Q 010538 254 C-VTQPP--DLS--KYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFED 328 (508)
Q Consensus 254 ~-g~~~~--d~~--~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (508)
. |..-. -.. ....|+++++ |.+|+-.-+|.++++++..+.+.+...++.
T Consensus 271 G~GRtG~~~a~e~~gv~PDivt~g--K~lggg~P~~av~~~~~i~~~~~~~~~~~T------------------------ 324 (456)
T 4atq_A 271 GFCRTGEWFAVDHEGVVPDIITMA--KGIAGGLPLSAITGRADLLDAVHPGGLGGT------------------------ 324 (456)
T ss_dssp TTTTTSSSSGGGGTTCCCSEEEEC--GGGGTTSSCEEEEEEHHHHTTSCTTSSCCS------------------------
T ss_pred ccCCccccccccccCCCCchhhhh--hcccCcCCceeeEecHHHHhcccccCCCCC------------------------
Confidence 4 32211 111 1247999887 865532228999999998776655422211
Q ss_pred CCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCC
Q 010538 329 GTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPD 408 (508)
Q Consensus 329 gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 408 (508)
.+-|..+.++..++++.+.+. ++.++..++.++|.+.|+++..........++++-.. ++.++.+.+....
T Consensus 325 f~gnpla~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG------~Gl~~giel~~~~ 395 (456)
T 4atq_A 325 YGGNPVACAAALAAIDTMEQH---DLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRG------RGAMLAIELVQPG 395 (456)
T ss_dssp SSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEE------ETTEEEEEEBCTT
T ss_pred CCCChHHHHhhHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeee------cceEEEEEEecCC
Confidence 122455666667788887764 4567777778888777765421000000111221111 2677788875432
Q ss_pred CCccC---HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCH
Q 010538 409 GSWFG---YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTF 485 (508)
Q Consensus 409 ~~~~~---~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ 485 (508)
....+ ...+.+.+.++|+.+.+.- + ..+.||+.+.+-.|+
T Consensus 396 ~~~~~~~~~~~v~~~~~~~Gvl~~~~g---~----------------------------------~~~~irl~PpL~it~ 438 (456)
T 4atq_A 396 SKEPNAELTKAVAAACLKEGVIILTCG---T----------------------------------YGNVIRLLPPLVISD 438 (456)
T ss_dssp SCCBCHHHHHHHHHHHHHTTEECEEEC---T----------------------------------TSCEEEECCCTTCCH
T ss_pred CCCcCHHHHHHHHHHHHHCCCEEEecC---C----------------------------------CCCEEEEECCCCCCH
Confidence 22111 1347778888999986521 0 157899999999999
Q ss_pred HHHHHHHHhhhhhhh
Q 010538 486 EDAKVNRCSSFDFVN 500 (508)
Q Consensus 486 eev~~l~~~~~~~~~ 500 (508)
+|++++++.+.+.++
T Consensus 439 ~~id~~l~~l~~al~ 453 (456)
T 4atq_A 439 ELLIDGLEVLAAAIK 453 (456)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988765
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.40 E-value=7.2e-11 Score=124.36 Aligned_cols=360 Identities=11% Similarity=0.045 Sum_probs=204.5
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|||..+. +--+|.+++++.+++. .... .+..+ +. ..+...++-++++++...+.+ .|.|++|+
T Consensus 65 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~-~l~~-~~~~~--~~-~~~~~~~lAe~L~~~~p~~~~--~v~f~~sG 137 (473)
T 4e3q_A 65 NGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYE-RFPG-YHAFF--GR-MSDQTVMLSEKLVEVSPFDSG--RVFYTNSG 137 (473)
T ss_dssp TCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHH-HCCC-CCCCT--TE-EEHHHHHHHHHHHHHSSCSSC--EEEEESSH
T ss_pred CCCEEEEcccCHHHhhccCCCHHHHHHHHHHHH-hccc-ccccc--cc-cCHHHHHHHHHHHhhCCCCcc--EEEEeCch
Confidence 77889997543 4447888888766543 2211 11111 00 112234456778888877777 89999999
Q ss_pred HHHHHHHHhhcC------C-CCCCeEEEecccc-cchHHHHHHHH-----hcC---CeEEEEccCCc---cCcccccccc
Q 010538 113 TAALKLVGEAFP------W-SHQSSYMYTMENH-NSVLGIREYAL-----SQG---AAAFAIDVEEA---VDNDGLSESL 173 (508)
Q Consensus 113 t~al~~~~~~l~------~-~~g~~vl~~~~~h-~s~~~~~~~~~-----~~G---~~v~~v~~~~~---~~~~~l~~~~ 173 (508)
|+|+..++.... . .....||.....| ........... ..+ ..+..++.... ......+
T Consensus 138 sEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~--- 214 (473)
T 4e3q_A 138 SEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETE--- 214 (473)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCH---
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchh---
Confidence 999988876531 1 2234566665444 33333322210 011 11223322110 0000000
Q ss_pred ccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEe
Q 010538 174 VTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLID 249 (508)
Q Consensus 174 ~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD 249 (508)
........++++ +.+. ....+++..|++.-+....|.+.| ++++.++|++ +|+++|+|
T Consensus 215 --~~~~~~~~~~l~--~~i~--~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~------------~gilLI~D 276 (473)
T 4e3q_A 215 --EQFVARLARELE--ETIQ--REGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRK------------YDIPVISD 276 (473)
T ss_dssp --HHHHHHHHHHHH--HHHH--HHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHH------------TTCCEEEE
T ss_pred --hHHHHHHHHHHH--HHHH--hhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcc------------cceEEecc
Confidence 000000112222 2221 112356788999999998899888 5566666665 99999999
Q ss_pred ccccC-CCCCCCC----CCCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCcc
Q 010538 250 AAKGC-VTQPPDL----SKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 250 ~a~~~-g~~~~d~----~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
++++. |..-.-+ -....|+++.+ |.+++- .-+|.++++++..+.+.+......
T Consensus 277 EV~tGfGRtG~~fa~e~~gv~PDi~t~~--K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~------------------- 335 (473)
T 4e3q_A 277 EVICGFGRTGNTWGCVTYDFTPDAIISS--KNLTAGFFPMGAVILGPELSKRLETAIEAIE------------------- 335 (473)
T ss_dssp CTTTSSSTTSSSCHHHHTTCCCSEEEEC--GGGGTTSSCCEEEEECHHHHHHHHHHHHHHS-------------------
T ss_pred CccccCCcccchhHHHhcCCCCChHHhc--ccccCCCCCcccccccHHHHHHhcccccccc-------------------
Confidence 99874 3221111 12247999887 965521 128999999998766543211000
Q ss_pred ccccCCC--CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEE
Q 010538 324 ELFEDGT--ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVS 401 (508)
Q Consensus 324 ~~~~~gt--~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 401 (508)
.....+| -|..+.++..++++.+.+. .+.++..++.++|.+.|+++.. .+.+.-+ .+ ++.++.
T Consensus 336 ~~~hg~T~~Gnpla~Aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~---~~~v~~v--RG-------~Gl~~g 400 (473)
T 4e3q_A 336 EFPHGFTASGHPVGCAIALKAIDVVMNE---GLAENVRRLAPRFEERLKHIAE---RPNIGEY--RG-------IGFMWA 400 (473)
T ss_dssp CCCCCCTTTTCHHHHHHHHHHHHHHHHS---SHHHHHHHHHHHHHHHHHHHTT---STTEEEE--EE-------ETTEEE
T ss_pred ccccCCCCCCCcchhhhhhhhhhhhccc---cHHHHHHHHHHHHHHHHHHHhc---CCCeeEE--ee-------cceEEE
Confidence 0011122 2445566666678877664 4567778888899888877631 1233211 11 266777
Q ss_pred EEeeCCCCC--ccC-----HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCce
Q 010538 402 FNLKRPDGS--WFG-----YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGA 474 (508)
Q Consensus 402 ~~~~~~~~~--~~~-----~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (508)
+.+...... .++ ...+.+.+.++|+.+++. .+.
T Consensus 401 ielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~----------------------------------------g~~ 440 (473)
T 4e3q_A 401 LEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPL----------------------------------------GQS 440 (473)
T ss_dssp EEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEE----------------------------------------TTE
T ss_pred EEEecCccccccccccHHHHHHHHHHHHHCCcEEEec----------------------------------------CCE
Confidence 776322111 011 235778888999998752 467
Q ss_pred EEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 475 IRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 475 iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
+|+++.+..|++|+|.+++.+.+.++.+
T Consensus 441 i~l~PPL~it~~eid~~~~~l~~al~~v 468 (473)
T 4e3q_A 441 VVLCPPFILTEAQMDEMFDKLEKALDKV 468 (473)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988877643
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=4e-09 Score=118.31 Aligned_cols=217 Identities=10% Similarity=0.014 Sum_probs=130.5
Q ss_pred CCCceEEEEeCC-CCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecccc-CCCCCCCCC----CCCCcE
Q 010538 199 GDAYNLFAFPSE-CNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKG-CVTQPPDLS----KYPVDF 268 (508)
Q Consensus 199 ~~~t~lv~~~~~-~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~-~g~~~~d~~----~~~~D~ 268 (508)
.+++..|++..+ ++..|.+.+ +++|.++|++ +|+++|+|++++ +|....-+. ....|+
T Consensus 592 ~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~------------~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi 659 (831)
T 4a0g_A 592 SAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRN------------RKIPVIFDEVFTGFWRLGVETTTELLGCKPDI 659 (831)
T ss_dssp -CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHH------------TTCCEEEECTTTTTTTTSBSSTHHHHSSCCSE
T ss_pred CCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHH------------cCCeEEEEcCccccccCCCchhhHhcCCCCcE
Confidence 356888888886 888888886 6777777776 999999999886 333221111 124688
Q ss_pred EEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH
Q 010538 269 VVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN 347 (508)
Q Consensus 269 ~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~ 347 (508)
+++| |.+++- .-+|++++++++.+.+.+.-.... | ...+ ..+.|....++..++++.+.
T Consensus 660 itls--K~L~gG~~Plgav~~~~~i~~~~~~~~~~~~----------~-------~hg~-T~~g~Pla~Aaala~L~~i~ 719 (831)
T 4a0g_A 660 ACFA--KLLTGGMVPLAVTLATDAVFDSFSGDSKLKA----------L-------LHGH-SYSAHAMGCATAAKAIQWFK 719 (831)
T ss_dssp EEEC--GGGGTTSSCCEEEEECHHHHHTTCSSCGGGS----------C-------CCCC-TTTTCHHHHHHHHHHHHHHH
T ss_pred EEEe--cccccCccCcEEEEECHHHHHHHhccccccc----------c-------eeec-CCcccHHHHHHHHHHHHHHH
Confidence 7654 977631 026999999998776653210000 0 0000 11234556666777888876
Q ss_pred hcChH-HHHHHHHHH----HHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCC----ccCHHHHH
Q 010538 348 SLTVP-AICRHIASL----GMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGS----WFGYREVE 418 (508)
Q Consensus 348 ~~g~~-~i~~~~~~l----~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~l~ 418 (508)
+.++. .+.+....+ .+.+.+.+.+.+ .+.-+.. .+.++.+.+...... ......+.
T Consensus 720 ~~~l~~~~~~~~~~l~~~l~~~l~~~l~~~~------~v~~vrg---------~Gl~~~iel~~~~~~~~~~~~~a~~~~ 784 (831)
T 4a0g_A 720 DPETNHNITSQGKTLRELWDEELVQQISSHS------AVQRVVV---------IGTLFALELKADASNSGYASLYAKSLL 784 (831)
T ss_dssp CTTTCTTBCTTSSBBCCCSCHHHHHHHHHST------TEEEEEE---------ETTEEEEEEC---------CHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhCC------CceeEee---------cccEEEEEEecCccccccchHHHHHHH
Confidence 54321 111111111 223444555542 3433321 167777777432110 01123577
Q ss_pred HHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 419 KLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 419 ~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
+.|.++||.++++ .+.||+++.+.+|.+||+++++.|.+.
T Consensus 785 ~~l~e~Gv~v~p~----------------------------------------g~~lrl~pp~~~t~e~id~~~~~l~~~ 824 (831)
T 4a0g_A 785 IMLREDGIFTRPL----------------------------------------GNVIYLMCGPCTSPEICRRLLTKLYKR 824 (831)
T ss_dssp HHHHHTTEECCCB----------------------------------------TTEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCcEEEec----------------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 8888999998763 468999999999999999999999887
Q ss_pred hhhh
Q 010538 499 VNFS 502 (508)
Q Consensus 499 ~~~~ 502 (508)
++.+
T Consensus 825 l~~l 828 (831)
T 4a0g_A 825 LGEF 828 (831)
T ss_dssp HTTT
T ss_pred HHHh
Confidence 6543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 508 | ||||
| d1jf9a_ | 405 | c.67.1.3 (A:) NifS-like protein/selenocysteine lya | 4e-26 | |
| d1p3wa_ | 391 | c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich | 4e-23 | |
| d1t3ia_ | 408 | c.67.1.3 (A:) Probable cysteine desulfurase SufS { | 2e-20 | |
| d1eg5a_ | 376 | c.67.1.3 (A:) NifS-like protein/selenocysteine lya | 3e-19 | |
| d1elua_ | 381 | c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocyst | 2e-09 | |
| d1qz9a_ | 404 | c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescen | 8e-06 |
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} Length = 405 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Score = 107 bits (268), Expect = 4e-26
Identities = 85/475 (17%), Positives = 153/475 (32%), Gaps = 100/475 (21%)
Query: 25 SIDQIRATEFKRLENGT-----VYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQS-DI 78
S+D++RA +F L YLD A + ++A +F + Y H +
Sbjct: 3 SVDKVRA-DFPVLSREVNGLPLAYLDSAASAQKPSQVIDAE-AEFYRHGYAAVHRGIHTL 60
Query: 79 SLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSS----YMYT 134
S + + R++ + NA + +F G T + LV ++ S+ + +
Sbjct: 61 SAQATEKMENVRKRASLFINARSAEE-LVFVRGTTEGINLVANSWGNSNVRAGDNIIISQ 119
Query: 135 MENHNSVLGIREYALSQGAAAFAIDVEE--AVDNDGLSESLVTSTKISLLPIQRRKGASF 192
ME+H +++ + GA I + + + L T+
Sbjct: 120 MEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTR-------------- 165
Query: 193 PERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAK 252
L A N G+ L + + + VL+D A+
Sbjct: 166 -----------LLAITHVSNVLGTENPLAEMITLAH------------QHGAKVLVDGAQ 202
Query: 253 GCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIAD 312
+ P D+ DF V S +K++G PTG+G L ++ + + G +A
Sbjct: 203 AVMHHPVDVQALDCDFYVFSGHKLYG-PTGIGILYVKEALLQEMPPWEGGGSMIATVSLS 261
Query: 313 IDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSL 372
+ FE GT + I + +++L + I + +L Y L
Sbjct: 262 EGTTWTKA--PWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQL--- 316
Query: 373 RHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGC 432
T+YG + +++FNL + +V GI +RTG
Sbjct: 317 ---ESVPDLTLYGP-------QNRLGVIAFNLGKHHAY-----DVGSFLDNYGIAVRTGH 361
Query: 433 FCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFED 487
C A Y R S +T E+
Sbjct: 362 HCAMPLMAYY---------------------------NVPAMCRASLAMYNTHEE 389
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Score = 98.9 bits (245), Expect = 4e-23
Identities = 76/453 (16%), Positives = 141/453 (31%), Gaps = 99/453 (21%)
Query: 42 VYLDHAGATLYSELQMEAIFRDFTT-NVYGNPHSQS-DISLATCDIVRAAREQVLDYFNA 99
+YLD++ T E + + T +GNP S+S + V AR Q+ D A
Sbjct: 4 IYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGA 63
Query: 100 SMKDYKCIFTSGATAALKLVGEAFPWSHQSS---YMYTMENHNSVLGIREYALSQGAAAF 156
++ +FTSGAT + L + +Q + + H +VL +G
Sbjct: 64 DPRE--IVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVT 121
Query: 157 AIDVEEA--VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFS 214
+ + +D L ++ T L + N
Sbjct: 122 YLAPQRNGIIDLKELEAAMRDDTI-------------------------LVSIMHVNNEI 156
Query: 215 GSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFY 274
G ++ I M + + +DA + P DLS+ VD + S +
Sbjct: 157 GVVQDIAAIGEMCRAR------------GIIYHVDATQSVGKLPIDLSQLKVDLMSFSGH 204
Query: 275 KIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFL 334
KI+G G+GAL +R ++ GG + V + G+ E +
Sbjct: 205 KIYGPK-GIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEM- 262
Query: 335 SIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYH 394
+ L + + I Y + H
Sbjct: 263 -----------------ATEMERLRGLRNRLWNGI-----------KDIEEVYLNGDLEH 294
Query: 395 DTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNI 454
++++ + +G + +L + + +G C + L S +L +
Sbjct: 295 GAPNILNVSFNYVEGESL-------IMALKDLAVSSGSACTSAS------LEPSYVLRAL 341
Query: 455 EAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFED 487
+ +IR S G +T E+
Sbjct: 342 ----------GLNDELAHSSIRFSLGRFTTEEE 364
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} Length = 408 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Score = 91.2 bits (225), Expect = 2e-20
Identities = 81/480 (16%), Positives = 149/480 (31%), Gaps = 103/480 (21%)
Query: 23 PKSIDQIRATEFKRLENGT-----VYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQS- 76
P +R +F L VYLD+A + +E + + N N H +
Sbjct: 1 PSLAATVRQ-DFPILNQEINGHPLVYLDNAATSQKPRAVLEKL-MHYYENDNANVHRGAH 58
Query: 77 DISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSS---YMY 133
+S+ D A R +V + NA ++T AT A+ LV ++ ++ + +
Sbjct: 59 QLSVRATDAYEAVRNKVAKFINARSPRE-IVYTRNATEAINLVAYSWGMNNLKAGDEIIT 117
Query: 134 TMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFP 193
T+ H+S L + + + GA
Sbjct: 118 TVMEHHSNLVPWQM------------------------------------VAAKTGAVLK 141
Query: 194 ERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISP------FSKGRWMVL 247
+F E + L+ ++ + + VL
Sbjct: 142 FVQL----DEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVL 197
Query: 248 IDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVA 307
+DA + P D+ D++V S + PTG+G L + + + + +F GG +
Sbjct: 198 VDACQSAPHYPLDVQLIDCDWLVASGH-KMCAPTGIGFLYGKEEILEAMPP-FFGGGEMI 255
Query: 308 ASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRK 367
A + F + FE GT + ++ + + L + I + L Y
Sbjct: 256 AEVFFDHF--TTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHY--- 310
Query: 368 VLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQ 427
G Y + D ++ SFN+ S +V + GI
Sbjct: 311 ------LWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGLHAS-----DVATMVDQDGIA 359
Query: 428 LRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFED 487
+R+G C H +G+ R S + +T E+
Sbjct: 360 IRSGHHCTQP--------LHRLF-------------------DASGSARASLYFYNTKEE 392
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} Length = 376 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Score = 87.0 bits (214), Expect = 3e-19
Identities = 76/451 (16%), Positives = 130/451 (28%), Gaps = 97/451 (21%)
Query: 42 VYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASM 101
VY D+ T + +E + F YGNP+S + + + ARE+V S
Sbjct: 3 VYFDNNATTRVDDRVLEEM-IVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSP 61
Query: 102 KDYKCIFTSGATAALKLVGEAFPWSHQ---SSYMYTMENHNSVLGIREYALSQGAAAFAI 158
+ FTS AT ++ + + + + + + T H +VL +Y +G +
Sbjct: 62 SE--IFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYV 119
Query: 159 DVEEA--VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGS 216
V+ V + L + + T + + +
Sbjct: 120 PVDSRGVVKLEELEKLVDEDTFL-------------------------------VSIMAA 148
Query: 217 RFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKI 276
+ I ++ I +V +DA + P L K VD+ S +K
Sbjct: 149 NNEVGTIQPVEDVT----RIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKF 204
Query: 277 FGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSI 336
G P G+G +R ++ GG E GT + I
Sbjct: 205 HG-PKGVGITYIRKGVP--IRPLIHGGGQ-----------------ERGLRSGTQNVPGI 244
Query: 337 ASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDT 396
+ A V ++ H ++ T +
Sbjct: 245 VGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFPNIR- 303
Query: 397 GSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEA 456
GS + L S GI + T C
Sbjct: 304 GSTLQNLL-----------------SGYGIYVSTSSACTSKD---------------ERL 331
Query: 457 GHVCWDDNDIIHGKPTGAIRVSFGYMSTFED 487
HV D + GAIR+S +T E+
Sbjct: 332 RHVL-DAMGVDRRIAQGAIRISLCKYNTEEE 361
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Score = 57.2 bits (136), Expect = 2e-09
Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 4/109 (3%)
Query: 33 EFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQ 92
+F L N Y + G + + +EAI + N + ++ R+
Sbjct: 1 QFPGLAN-KTYFNFGGQGILPTVALEAI-TAMYGYLQENGPFSIAANQHIQQLIAQLRQA 58
Query: 93 VLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSV 141
+ + FN T T +V W + T H +
Sbjct: 59 LAETFNVDPNT--ITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGI 105
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Score = 45.9 bits (107), Expect = 8e-06
Identities = 44/373 (11%), Positives = 92/373 (24%), Gaps = 45/373 (12%)
Query: 37 LENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDY 96
L G +YLD + + +GN +S S D+ ++
Sbjct: 24 LPEGVIYLDGNSLGARPVAALARA-QAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATL 82
Query: 97 FNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAF 156
A + + T + L + R
Sbjct: 83 IGARDGE--VVVTDTTSINL----------FKVLSAALRVQATRSPERR----------- 119
Query: 157 AIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGS 216
I E + L + + + R + + +G
Sbjct: 120 VIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDSPEELPQAIDQDTAVVMLTHVNYKTGY 179
Query: 217 RFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKI 276
++ + + + + D A P DL + D+ + YK
Sbjct: 180 MHDMQALTALSHEC------------GALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKY 227
Query: 277 FGYPTG-LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLS 335
G + + L+ + A + G+ + GT S
Sbjct: 228 LNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIAR-YLCGTQPITS 286
Query: 336 IASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHD 395
+A + G ++ + ++ R +L +++ + T+
Sbjct: 287 LAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHE---LTLVTPREHA----K 339
Query: 396 TGSMVSFNLKRPD 408
GS VSF
Sbjct: 340 RGSHVSFEHPEGY 352
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 508 | |||
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 100.0 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 100.0 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 100.0 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 100.0 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 100.0 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 100.0 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 100.0 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 100.0 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 100.0 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 100.0 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 100.0 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 100.0 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.97 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.96 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.96 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.95 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 99.95 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.95 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 99.95 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.95 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.94 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.93 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.93 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.93 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.93 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.93 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.93 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.93 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.93 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.93 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.92 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.92 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.92 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.92 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.92 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.92 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.92 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.91 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.91 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.91 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.91 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.9 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.9 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.89 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.89 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.86 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.86 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.85 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.84 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.83 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.82 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.81 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.8 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.8 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 99.79 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.78 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.77 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 99.75 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 99.74 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.74 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 99.73 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 99.72 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 99.72 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.71 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.71 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.71 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.7 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.69 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.69 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.68 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 99.68 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.67 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.66 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.63 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.61 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.5 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.5 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.47 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.47 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.47 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.47 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 99.45 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.38 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.37 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.21 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.2 |
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.9e-54 Score=443.78 Aligned_cols=391 Identities=20% Similarity=0.252 Sum_probs=330.0
Q ss_pred CchHHHHHHhhccCCC-----CCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCC-ccchhhhhhHHHHHHHHHHHHHc
Q 010538 24 KSIDQIRATEFKRLEN-----GTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHS-QSDISLATCDIVRAAREQVLDYF 97 (508)
Q Consensus 24 ~~~~~~r~~~f~~~~~-----~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~ 97 (508)
.+|+++|+ +||.|.+ +++|||+++++++|+.+++++.+ ++.+.++||++ .+..+....+.++++|+.+|+++
T Consensus 2 ~d~~~vR~-~FP~l~~~~~~~~~iYld~a~~~~~p~~v~~~~~~-~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l 79 (405)
T d1jf9a_ 2 FSVDKVRA-DFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEAE-FYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFI 79 (405)
T ss_dssp CCHHHHHH-TCGGGGCEETTEECEECCTTTCCCCCHHHHHHHHH-HHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHH-hChhcccCcCCCCeEEEeCccccCCCHHHHHHHHH-HHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHc
Confidence 48999999 9999942 46999999999999999998754 55677889985 46677778889999999999999
Q ss_pred CCC-CCCceEEEcCChHHHHHHHHhh---cCCCCCCeEEEecccccchH-HHHHHHHhcCCeEEEEccCCccCccccccc
Q 010538 98 NAS-MKDYKCIFTSGATAALKLVGEA---FPWSHQSSYMYTMENHNSVL-GIREYALSQGAAAFAIDVEEAVDNDGLSES 172 (508)
Q Consensus 98 ~~~-~~~~~i~~t~g~t~al~~~~~~---l~~~~g~~vl~~~~~h~s~~-~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~ 172 (508)
|+. ++ +|+|++|+|++++.++.+ ..+.+|++|+++..+||+.. +|..++++.|++|+.+|++.++.+
T Consensus 80 ~~~~~~--~i~~~~~~T~~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~g~~------ 151 (405)
T d1jf9a_ 80 NARSAE--ELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTL------ 151 (405)
T ss_dssp TCSCGG--GEEEESSHHHHHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCB------
T ss_pred CCCCcc--cccccCcHHHHHHHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCCCCcC------
Confidence 975 45 899999999999998877 44688999999999999865 456666788999999999887776
Q ss_pred cccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccc
Q 010538 173 LVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAK 252 (508)
Q Consensus 173 ~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~ 252 (508)
+++.++ ++ ++++|++|++++++|.||.++|+++|.++||+ +|+++++|++|
T Consensus 152 ---------~~~~~~--~~------i~~~t~lv~~~~v~~~tG~~~pi~~i~~~~~~------------~g~~~~vD~~q 202 (405)
T d1jf9a_ 152 ---------QLETLP--TL------FDEKTRLLAITHVSNVLGTENPLAEMITLAHQ------------HGAKVLVDGAQ 202 (405)
T ss_dssp ---------CGGGHH--HH------CCTTEEEEEEESBCTTTCCBCCHHHHHHHHHH------------TTCEEEEECTT
T ss_pred ---------CHHHHH--Hh------ccCCcEEEEEecCCCcccccCchHHhhhHHHH------------cCCeeecccce
Confidence 567777 33 47899999999999999999999999999998 89999999999
Q ss_pred cCCCCCCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCC
Q 010538 253 GCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTAS 332 (508)
Q Consensus 253 ~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~ 332 (508)
+.|+.++|+.++++|++++|+|||+| |.|+|+++++++.++.+.|...++...........+ .....+.+++.||++
T Consensus 203 ~~g~~~id~~~~~~D~~~~s~hK~~G-p~G~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~r~e~GT~~ 279 (405)
T d1jf9a_ 203 AVMHHPVDVQALDCDFYVFSGHKLYG-PTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGT--TWTKAPWRFEAGTPN 279 (405)
T ss_dssp TTTTSCCCHHHHTCSEEEEEGGGTTS-CSSCEEEEECHHHHTTCCCSSCSSSSEEECCTTTCC--EECCTTGGGCCSSCC
T ss_pred eccccccchhhcCCceeecccccccc-CCCceeeeechhhhcccCcccccccccCcccccccc--ccccchhhhcCCCCc
Confidence 99999999999999999999999987 999999999999988888876665443322211111 123457889999999
Q ss_pred hhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCcc
Q 010538 333 FLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWF 412 (508)
Q Consensus 333 ~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 412 (508)
+..++++.++++++.+.|++.+.++...|.+++.+.++..+ .+.+..+.. +.++++|.+++.++
T Consensus 280 ~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~l~~~~------~~~~~~~~~-------r~~ivsf~~~~~~~--- 343 (405)
T d1jf9a_ 280 TGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVP------DLTLYGPQN-------RLGVIAFNLGKHHA--- 343 (405)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTST------TEEEESCTT-------CCSEEEEEETTCCH---
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhhhhcCC------cccccCCcC-------cCcEEEEEcCCCCH---
Confidence 99999999999999999999999999999999999999884 577776643 48999999987543
Q ss_pred CHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHH
Q 010538 413 GYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNR 492 (508)
Q Consensus 413 ~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~ 492 (508)
.++...|.++||.++.|++|+.+.. ..++. ++.+|||+|+|||.+|||+++
T Consensus 344 --~~~~~~L~~~gI~v~~G~~c~~~~~------------~~~~~---------------~g~iRiS~~~ynt~eDid~l~ 394 (405)
T d1jf9a_ 344 --YDVGSFLDNYGIAVRTGHHCAMPLM------------AYYNV---------------PAMCRASLAMYNTHEEVDRLV 394 (405)
T ss_dssp --HHHHHHHHHTTEECEEECTTCHHHH------------HHTTC---------------SCEEEEECCTTCCHHHHHHHH
T ss_pred --HHHHHHHHHCCcEEEccchhhhhHH------------HhcCC---------------CCEEEEECCCCCCHHHHHHHH
Confidence 4588999999999999999987542 22221 689999999999999999999
Q ss_pred Hhhhhhhhh
Q 010538 493 CSSFDFVNF 501 (508)
Q Consensus 493 ~~~~~~~~~ 501 (508)
++|+++.+-
T Consensus 395 ~~l~~i~r~ 403 (405)
T d1jf9a_ 395 TGLQRIHRL 403 (405)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988764
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=100.00 E-value=5.8e-53 Score=438.02 Aligned_cols=395 Identities=21% Similarity=0.292 Sum_probs=329.3
Q ss_pred chHHHHHHhhccCCC-----CCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCC-ccchhhhhhHHHHHHHHHHHHHcC
Q 010538 25 SIDQIRATEFKRLEN-----GTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHS-QSDISLATCDIVRAAREQVLDYFN 98 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~-----~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~~ 98 (508)
.+..||+ +||.|.+ ++||||+++++++|+.|++++.+ ++.+.++||++ .+..+....+.++++|+.+|+++|
T Consensus 3 ~~a~iR~-~FP~l~~~~~~~~~iYld~a~~~~~p~~v~~~~~~-~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llg 80 (408)
T d1t3ia_ 3 LAATVRQ-DFPILNQEINGHPLVYLDNAATSQKPRAVLEKLMH-YYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFIN 80 (408)
T ss_dssp HHHHHGG-GCGGGSCEETTEECEECBTTTCCCCCHHHHHHHHH-HHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHH-hCcccccccCCCCeEEeeCccccCCCHHHHHHHHH-HHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 5778999 9999942 25999999999999999998755 55567889876 466777888999999999999999
Q ss_pred CCCCCceEEEcCChHHHHHHHHhhc---CCCCCCeEEEecccccchHH-HHHHHHhcCCeEEEEccCCccCccccccccc
Q 010538 99 ASMKDYKCIFTSGATAALKLVGEAF---PWSHQSSYMYTMENHNSVLG-IREYALSQGAAAFAIDVEEAVDNDGLSESLV 174 (508)
Q Consensus 99 ~~~~~~~i~~t~g~t~al~~~~~~l---~~~~g~~vl~~~~~h~s~~~-~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~ 174 (508)
+++.+ .+++++++|+++++++.++ .+++|++|+++..+||+... |...+++.|.+++.+|.+..+..
T Consensus 81 a~~~~-~i~~~~~tt~~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~~~~-------- 151 (408)
T d1t3ia_ 81 ARSPR-EIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESF-------- 151 (408)
T ss_dssp CSCGG-GEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSB--------
T ss_pred CCCcc-cEEeecchHHHHHHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeeccccccc--------
Confidence 97532 7999999999999988773 46789999999999998765 45567778999999998776655
Q ss_pred cccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC
Q 010538 175 TSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC 254 (508)
Q Consensus 175 ~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~ 254 (508)
+.+.++ ++ .+++|++|++++++|.||.++|+++|.++|++ +|+++++|++|++
T Consensus 152 -------~~~~l~--~~------~~~~t~lv~i~~~~~~tG~~~p~~~i~~~~~~------------~g~~~ivDa~q~~ 204 (408)
T d1t3ia_ 152 -------DLEHFK--TL------LSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQ------------AGAKVLVDACQSA 204 (408)
T ss_dssp -------CHHHHH--HH------CCTTEEEEEEESBCTTTCBBCCHHHHHHHHHH------------TTCEEEEECTTTT
T ss_pred -------cHHHhh--hc------cCCCceEEEEecccccccccCcHHHHhhhhhc------------cCceeeeccceec
Confidence 577787 43 36899999999999999999999999999998 8999999999999
Q ss_pred CCCCCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChh
Q 010538 255 VTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFL 334 (508)
Q Consensus 255 g~~~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 334 (508)
|..|+|++++++|++++|+|||+| |.|+|+++++++....+.|...||......... .+ .....+.+++.||++++
T Consensus 205 g~~~id~~~~~~D~~~~s~hK~~g-p~G~g~l~v~~~~~~~~~p~~~g~~~~~~~~~~-~~--~~~~~~~r~e~Gt~~~~ 280 (408)
T d1t3ia_ 205 PHYPLDVQLIDCDWLVASGHKMCA-PTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFD-HF--TTGELPHKFEAGTPAIA 280 (408)
T ss_dssp TTSCCCHHHHTCSEEEEEGGGTTS-CTTCEEEEECHHHHHHSCCCSCSTTSEEEECSS-CE--EECCTTGGGCCSSCCHH
T ss_pred ccccccccccCCceEEeccccccC-CCCccccccchhhhhcCCceecCCccccccccc-cc--ccCCchhhhcCCcHHHH
Confidence 999999999999999999999987 999999999999987777766555433222111 11 12345788999999999
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCH
Q 010538 335 SIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGY 414 (508)
Q Consensus 335 ~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 414 (508)
.++++..+++++.+.|++++.++..++.+++.+.+.+.+ ++.++++.... .++.++++|.+++. +.
T Consensus 281 ~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~~~------~~~~~~~~~~~---~~~~~iv~f~~~~~-----~~ 346 (408)
T d1t3ia_ 281 EAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIP------QLRLYGPNPKH---GDRAALASFNVAGL-----HA 346 (408)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCT------TEEEESCCGGG---SCBCSEEEEEETTB-----CH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHhhhhccCc------cccccCCCccc---cCcceEEEEEeCCC-----CH
Confidence 999999999999999999999999999999999999884 78888765431 34689999999874 34
Q ss_pred HHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHh
Q 010538 415 REVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCS 494 (508)
Q Consensus 415 ~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~ 494 (508)
.++.+.|.++||.++.|++|+.+.. ..++ .+++||||+|+|||.+|||+++++
T Consensus 347 ~~v~~~L~~~gI~v~~G~~c~~~~~-~~~~--------------------------~~g~vRiS~~~ynt~~did~li~~ 399 (408)
T d1t3ia_ 347 SDVATMVDQDGIAIRSGHHCTQPLH-RLFD--------------------------ASGSARASLYFYNTKEEIDLFLQS 399 (408)
T ss_dssp HHHHHHHHTTTEECBCSCTTCHHHH-HHTT--------------------------CCCCEEEECCTTCCHHHHHHHHHH
T ss_pred HHHHHHHhhCCcEEecCcccccHHH-Hhhc--------------------------CCccEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999999987642 1221 267899999999999999999999
Q ss_pred hhhhhhhh
Q 010538 495 SFDFVNFS 502 (508)
Q Consensus 495 ~~~~~~~~ 502 (508)
|++.++|.
T Consensus 400 L~~~~~~f 407 (408)
T d1t3ia_ 400 LQATIRFF 407 (408)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998874
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=100.00 E-value=5e-48 Score=396.37 Aligned_cols=377 Identities=18% Similarity=0.217 Sum_probs=310.2
Q ss_pred hhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 33 EFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 33 ~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
|||.| ++.+|||+++.+++|+.|++++.+ ++...+.++...+..+......++++|+.+|+++|++++ +|+||+|+
T Consensus 1 ~fp~l-~~~~yld~~~~~~~p~~v~ea~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~--~i~~~~g~ 76 (381)
T d1elua_ 1 QFPGL-ANKTYFNFGGQGILPTVALEAITA-MYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPN--TITITDNV 76 (381)
T ss_dssp CCGGG-TTSEECCTTTCCCCCHHHHHHHHH-HHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGG--GEEEESSH
T ss_pred CCCCC-CCCEEeeCCcccCCCHHHHHHHHH-HHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCCcc--cEEEECCh
Confidence 69999 899999999999999999888755 444444455444444555667888999999999999998 89999999
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCC
Q 010538 113 TAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGAS 191 (508)
Q Consensus 113 t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~ 191 (508)
|+|+++++.++.+++|++|+++..+|+++...++ +.++.|++++.+|.+.....++ ..+.++ ++
T Consensus 77 t~a~~~~~~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-------------~~~~l~--~~ 141 (381)
T d1elua_ 77 TTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGD-------------AAAVLA--NH 141 (381)
T ss_dssp HHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSC-------------HHHHHH--TT
T ss_pred HHHhhhcchhhhhcCCceEEEeccccceeeeccccccccccccccccccccccccch-------------HHHHHH--hh
Confidence 9999999999988999999999999998876544 4566799999999876544422 256677 33
Q ss_pred CCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEE
Q 010538 192 FPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVM 271 (508)
Q Consensus 192 l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~ 271 (508)
++++|+++++++++|+||.+.|+++|.++|++ .....++++++|++|+.|..|+++.++++|++++
T Consensus 142 ------i~~~t~~v~i~~~~n~tG~~~~~~~I~~l~~~--------~~~~~~~~~~vD~~~~~g~~~~~~~~~~~D~~~~ 207 (381)
T d1elua_ 142 ------LGPKTRLVILSHLLWNTGQVLPLAEIMAVCRR--------HQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAF 207 (381)
T ss_dssp ------CCTTEEEEEEESBCTTTCCBCCHHHHHHHHHH--------CCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEE
T ss_pred ------hcccccccccccccccccccchhhHHHHHHhh--------cccccccccccccccccccccccccccccccccc
Confidence 46899999999999999999999999999986 2233589999999999999999999999999999
Q ss_pred eccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcCh
Q 010538 272 SFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTV 351 (508)
Q Consensus 272 S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~ 351 (508)
|+|||+++|.|+|+++++++..+.+.|.+.+|.......... .........+++.||++...++++.+|++++.+.|.
T Consensus 208 s~~K~~~~p~G~g~l~~~~~~~~~~~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~ 285 (381)
T d1elua_ 208 TGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGE--PTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGT 285 (381)
T ss_dssp ESSSTTCCCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSC--EEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCC
T ss_pred cccccccccchhhHHHhhHHHHHhcCcccccccccccccccc--cccccccccccccccccchhhhhhhhhhhhHHHhcc
Confidence 999999989999999999999999999888876443222110 011123467788999999999999999999888776
Q ss_pred -HHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeecc
Q 010538 352 -PAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRT 430 (508)
Q Consensus 352 -~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~ 430 (508)
+.+.++..++++++.+.|++++ +++++++... ++++++|.+++.. +..++.+.|+++||.++.
T Consensus 286 ~~~~~~~~~~~~~~l~~~L~~~~------~~~~~~~~~~------~~~~vsf~~~~~~----~~~~i~~~L~~~gi~v~~ 349 (381)
T d1elua_ 286 AEERYQAICQRSEFLWRGLNQLP------HVHCLATSAP------QAGLVSFTVDSPL----GHRAIVQKLEEQRIYLRT 349 (381)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHST------TEEESCSSCC------SSSEEEEEECSSS----CHHHHHHHHHHTTEECEE
T ss_pred cccchhhhhhHHHHHHHHHhcCC------CeEecCCCCc------cccEEEEEcCCCC----CHHHHHHHHHhCCcEEEe
Confidence 4556899999999999999984 7999977643 4789999987652 344688999999999864
Q ss_pred CCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 431 GCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 431 g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
.. .++++|+|+|+|||.||||+++++|++|
T Consensus 350 ~~--------------------------------------~~~~lRis~~~~nt~edid~ll~~l~e~ 379 (381)
T d1elua_ 350 IA--------------------------------------DPDCIRACCHYITDEEEINHLLARLADF 379 (381)
T ss_dssp ET--------------------------------------TTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred cC--------------------------------------CCCEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 11 2688999999999999999999999986
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.7e-47 Score=391.49 Aligned_cols=375 Identities=19% Similarity=0.247 Sum_probs=310.0
Q ss_pred CeeeeCCCCCCCCHHHHHHHHHHhh-ccccCCCCCc-cchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHH
Q 010538 41 TVYLDHAGATLYSELQMEAIFRDFT-TNVYGNPHSQ-SDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKL 118 (508)
Q Consensus 41 ~iyld~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~ 118 (508)
.||||+++++++++.|++++.+.+. ...|+||++. +..++...+.++++|+.+|+++|++++ +|+||+|+|++++.
T Consensus 3 ~iYlD~aa~~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~--~I~~~~~~t~~l~~ 80 (391)
T d1p3wa_ 3 PIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPR--EIVFTSGATESDNL 80 (391)
T ss_dssp SEECBTTTCCCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGG--GEEEESSHHHHHHH
T ss_pred eEEeeCccccCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCC--cEEEECCHHHHHHH
Confidence 6899999999999999999865443 2346788764 566777888999999999999999998 89999999999999
Q ss_pred HHhhcC---CCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCC
Q 010538 119 VGEAFP---WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPER 195 (508)
Q Consensus 119 ~~~~l~---~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~ 195 (508)
++.++. +++|++|++++.+|+++..+.+.++..|++++.+|.+..+.+ |+++++ +++
T Consensus 81 ~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~---------------d~~~~~--~~i--- 140 (391)
T d1p3wa_ 81 AIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGII---------------DLKELE--AAM--- 140 (391)
T ss_dssp HHHHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCC---------------CHHHHH--HHC---
T ss_pred HHhhhhhhhcCCCCEEEEeccccchHHHHHHHHHHcCCEEEEeCCCCCCeE---------------cHHHHH--HhC---
Confidence 988763 478999999999999999888888889999999999877766 678888 444
Q ss_pred CCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccc
Q 010538 196 DPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYK 275 (508)
Q Consensus 196 ~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K 275 (508)
+++|++|++++++|+||.++|+++|.++||+ +|+++++|++|++|..|+|+...++|++++|+||
T Consensus 141 ---~~~T~lv~is~~~n~tG~~~~~~~I~~~~~~------------~~~~~ivD~~~~~g~~~~d~~~~~~D~~~~s~~k 205 (391)
T d1p3wa_ 141 ---RDDTILVSIMHVNNEIGVVQDIAAIGEMCRA------------RGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHK 205 (391)
T ss_dssp ---CTTEEEEECCSBCTTTCCBCCHHHHHHHHHH------------HTCEEEEECTTTBTTBCCCTTTSCCSEEEEESTT
T ss_pred ---CCCcEEEEEECCCCCCeeECCHHHHHHHhcc------------CCcEEEEeeccccCCccccchhcccccccccccc
Confidence 6899999999999999999999999999998 8999999999999999999999999999999999
Q ss_pred cccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHH
Q 010538 276 IFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAIC 355 (508)
Q Consensus 276 ~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~ 355 (508)
|+| |.|+|+++++++......|...||.. +.+++.|+.+.+..+++..+++...+. .....
T Consensus 206 ~~g-~~g~g~~~~~~~~~~~~~~~~~gg~~-----------------~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~ 266 (391)
T d1p3wa_ 206 IYG-PKGIGALYVRRKPRVRIEAQMHGGGH-----------------ERGMRSGTLPVHQIVGMGEAYRIAKEE-MATEM 266 (391)
T ss_dssp TTS-CSSCEEEEECBTTBCCCCCSSCSSCT-----------------TTTTSCSCCCHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred ccC-CCceEEEEEecchhcccCCcccCCcc-----------------ccCcccCcchhhhhhhhhhhhhHHHHH-hhHHH
Confidence 998 88999999999988877887776642 566788999999999988888876664 56667
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCC
Q 010538 356 RHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCN 435 (508)
Q Consensus 356 ~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~ 435 (508)
+++.++.+++.+.|..+. +..+..... .+...+++|.+++... ..+...| +++.++.|++|.
T Consensus 267 ~~~~~~~~~l~~~L~~~~------~~~~~~~~~-----~~~~~~~~~~~~~~~~-----~~~~~~l--~~i~v~~G~~c~ 328 (391)
T d1p3wa_ 267 ERLRGLRNRLWNGIKDIE------EVYLNGDLE-----HGAPNILNVSFNYVEG-----ESLIMAL--KDLAVSSGSACT 328 (391)
T ss_dssp HHHHHHHHHHHHTTTTST------TEEECSCTT-----TSCTTEEEEEETTSCH-----HHHHHHT--TTEECBCCCC--
T ss_pred HHHHHHHHHHHHHHHhhc------Ceeeccccc-----ccCceEEEEEeCCCCh-----HHHHHHh--CCCEEEcccccc
Confidence 889999999999998874 565554433 2347788888876543 2355544 688899999998
Q ss_pred chHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhhhc
Q 010538 436 PGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQFL 505 (508)
Q Consensus 436 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~~~ 505 (508)
.+.. .+++++.++|.. .....|.||||+|+|||.+||++++++|+++++.++.+
T Consensus 329 ~~~~------~~~~~l~~~g~~----------~~~~~g~iRiS~~~~nt~edid~l~~~l~~~l~~lr~~ 382 (391)
T d1p3wa_ 329 SASL------EPSYVLRALGLN----------DELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDL 382 (391)
T ss_dssp ----------CCCHHHHHHTCC----------HHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCcc------chhHHHHHcCCC----------ccccCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 7643 567888888752 11235789999999999999999999999999887654
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.3e-46 Score=383.43 Aligned_cols=372 Identities=20% Similarity=0.250 Sum_probs=303.6
Q ss_pred CeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHH
Q 010538 41 TVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVG 120 (508)
Q Consensus 41 ~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~ 120 (508)
.||||+++++++|+.|++++.+ ++.+.++||++.+..+....+.++++|+.+|+++|++++ +|+|++|+|++++.++
T Consensus 2 ~iyld~a~~~~~p~~v~ea~~~-~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~--~i~~~~~~T~~l~~~~ 78 (376)
T d1eg5a_ 2 RVYFDNNATTRVDDRVLEEMIV-FYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPS--EIFFTSCATESINWIL 78 (376)
T ss_dssp CEECBTTTCCCCCHHHHHHHHH-HHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGG--GEEEESCHHHHHHHHH
T ss_pred EEEEECcccccCCHHHHHHHHH-HHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCC--cEEEECCHHHHHHhhh
Confidence 5899999999999999999755 556778999987777878888999999999999999998 8999999999999987
Q ss_pred hhc---CCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCC
Q 010538 121 EAF---PWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP 197 (508)
Q Consensus 121 ~~l---~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~ 197 (508)
.++ ...+|+.|+++..+|+++..+.+.++..|++|+.||++.++.+ |+++++ +++
T Consensus 79 ~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~~~~i---------------d~~~l~--~~i----- 136 (376)
T d1eg5a_ 79 KTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVV---------------KLEELE--KLV----- 136 (376)
T ss_dssp HHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCB---------------CHHHHH--HHC-----
T ss_pred hcccccccccCcccccccccchhhHHHHHHHHhcCCEEEEEcCCCCCeE---------------CHHHHH--Hhc-----
Confidence 653 4678899999999999999999999999999999999887777 688888 444
Q ss_pred CCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccc
Q 010538 198 AGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIF 277 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~ 277 (508)
+++|++|++++++|+||.+.|++++.++++. ...+++++||++|++|..|+|+.++++|++++|+|||+
T Consensus 137 -~~~t~lv~is~v~~~tG~~~~~~~i~~~~~~----------~~~~~~~~vD~~q~~g~~~~d~~~~~~D~~~~s~~K~~ 205 (376)
T d1eg5a_ 137 -DEDTFLVSIMAANNEVGTIQPVEDVTRIVKK----------KNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFH 205 (376)
T ss_dssp -CTTEEEEEEESBCTTTCBBCCHHHHHHHHHH----------HCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGT
T ss_pred -CCCceEEEEECCccccceeeeehhhhhhhhh----------cccCceeEEEeeeccccccccccccCccceecccceee
Confidence 6899999999999999999999999999853 12699999999999999999999999999999999998
Q ss_pred cCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHH
Q 010538 278 GYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRH 357 (508)
Q Consensus 278 g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~ 357 (508)
| |.|.|+++++++. .++|.+.+|+. ...+..|+.+.........+..... ........+
T Consensus 206 g-p~G~~~l~~~~~~--~~~p~~~g~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 264 (376)
T d1eg5a_ 206 G-PKGVGITYIRKGV--PIRPLIHGGGQ-----------------ERGLRSGTQNVPGIVGAARAMEIAV-EELSEAAKH 264 (376)
T ss_dssp S-CTTCEEEEECTTS--CCCCSBCSSCT-----------------TTTTBCSCCCHHHHHHHHHHHHHHH-HTHHHHHHH
T ss_pred c-CCCceeEEeccCc--ccCCcccCCCC-----------------cccccCCcccchhhhhHHHHhhccc-cchhhhhhh
Confidence 7 9999999998875 37788777653 4556778888888888777766653 357778888
Q ss_pred HHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCch
Q 010538 358 IASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPG 437 (508)
Q Consensus 358 ~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~ 437 (508)
...+..++.+.|.... ..+..+... .+..++.+.+++.++ ..+...|.++||.+++|++|+.+
T Consensus 265 ~~~~~~~~~~~l~~~~-------~~~~~~~~~-----~~~~~~~~~~~~~~~-----~~~~~~L~~~gI~vr~G~~c~~~ 327 (376)
T d1eg5a_ 265 MEKLRSKLVSGLMNLG-------AHIITPLEI-----SLPNTLSVSFPNIRG-----STLQNLLSGYGIYVSTSSACTSK 327 (376)
T ss_dssp HHHHHHHHHHHHHTTT-------CEECSCTTS-----BCTTEEEEECTTCCH-----HHHHHHHHHTTEECBC-------
T ss_pred hhhhhhhhcccccccc-------ccccccccc-----cccceeeeccCCCCH-----HHHHHHHhhCCeEEeCcchhcCC
Confidence 8889999999998762 344444332 347888888887544 45889999999999999999876
Q ss_pred HHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 438 ACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 438 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
.. .+++++.++|... ....++||||+|+|||.||||+++++|++++.|+
T Consensus 328 ~~------~~~~~l~~~gi~~----------~~~~~~iRiS~~~ynt~edid~l~~~L~~iv~~l 376 (376)
T d1eg5a_ 328 DE------RLRHVLDAMGVDR----------RIAQGAIRISLCKYNTEEEVDYFLKKIEEILSFL 376 (376)
T ss_dssp -----------CHHHHTTCCH----------HHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred cc------chhHHHHHcCCCc----------ccCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhC
Confidence 53 4667778877521 1125789999999999999999999999999875
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=100.00 E-value=2.2e-42 Score=356.52 Aligned_cols=378 Identities=14% Similarity=0.096 Sum_probs=283.8
Q ss_pred chHHHHHHhhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCc
Q 010538 25 SIDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDY 104 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~ 104 (508)
.+..+|+ +||.+ ++.||||+++.+++|..+++++.+ ++.+.++++......+..+.+.++++|+.+|+++|++++
T Consensus 14 ~l~~~R~-~F~~~-~~~iYLd~as~g~~p~~v~~a~~~-~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llga~~~-- 88 (404)
T d1qz9a_ 14 SLAPLRQ-QFALP-EGVIYLDGNSLGARPVAALARAQA-VIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDG-- 88 (404)
T ss_dssp TTGGGGG-GBCCC-TTCEECCTTTSCCCBTTHHHHHHH-HHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTT--
T ss_pred cHHHHHh-cCCCC-CCCEEcCCcccccCCHHHHHHHHH-HHHHHhcccCcccccchhHHHHHHHHHHHHHHHhCCCCC--
Confidence 4677898 99988 899999999999999999998755 555666666543223334457889999999999999999
Q ss_pred eEEEcCChHHHHHHHHhhc-----CCCCCCeEEEeccccc-chHHHHHHHHhcCCeEEEEccCCccCccccccccccccc
Q 010538 105 KCIFTSGATAALKLVGEAF-----PWSHQSSYMYTMENHN-SVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTK 178 (508)
Q Consensus 105 ~i~~t~g~t~al~~~~~~l-----~~~~g~~vl~~~~~h~-s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~ 178 (508)
+|+||+|+|++++.++.+. ...+++.++++..+|+ +...+.+.... +..++.+..+..
T Consensus 89 ei~~~~~~T~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~------------ 152 (404)
T d1qz9a_ 89 EVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLAD----MLQQGYTLRLVD------------ 152 (404)
T ss_dssp SEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHH----HHCSSCEEEEES------------
T ss_pred cEEEecCchHHHHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhhe----eeeeceeccccc------------
Confidence 8999999999998876532 1345666666655554 44555444322 222233222222
Q ss_pred cccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCC
Q 010538 179 ISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQP 258 (508)
Q Consensus 179 ~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~ 258 (508)
+++.++ ++ ++++|++|+++|++|.||.++|+++|.++|++ +|+++++|++|++|..+
T Consensus 153 ---~~~~~~--~~------i~~~T~lV~i~~v~~~tG~~~pv~~i~~~~~~------------~~~~~~vD~~q~~g~~~ 209 (404)
T d1qz9a_ 153 ---SPEELP--QA------IDQDTAVVMLTHVNYKTGYMHDMQALTALSHE------------CGALAIWDLAHSAGAVP 209 (404)
T ss_dssp ---SGGGHH--HH------CSTTEEEEEEESBCTTTCBBCCHHHHHHHHHH------------HTCEEEEECTTTTTTSC
T ss_pred ---cchhHH--Hh------cCCCceEEEEecccccccceecHHHHhccccc------------cccceeEEeeccccccc
Confidence 245556 33 37899999999999999999999999999998 89999999999999999
Q ss_pred CCCCCCCCcEEEEeccccccCCC-cceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHH
Q 010538 259 PDLSKYPVDFVVMSFYKIFGYPT-GLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIA 337 (508)
Q Consensus 259 ~d~~~~~~D~~~~S~~K~~g~P~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~ 337 (508)
+++.++++|++++|+|||+++|. |+|+++.+++..+.+.+...+++...... .............+++.++++..+..
T Consensus 210 ~~~~~~~~d~~~~s~~K~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (404)
T d1qz9a_ 210 VDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQF-AMEPRYEPSNGIARYLCGTQPITSLA 288 (404)
T ss_dssp CCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTS-CCCSSCCBCSSGGGGCCSCCCHHHHH
T ss_pred cccccccceEEEEechhhcccCCceEEEEEechhhhhhCCccccccCCccccc-cccccccccccchhhhhhhccchhHH
Confidence 99999999999999999875444 48999999988776655444433211110 00011112345778899999999999
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHH
Q 010538 338 SIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREV 417 (508)
Q Consensus 338 ~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l 417 (508)
.+..++.++.+.+...+.++...+.+++.+.+..+. ..+++++++|... ..++++++|.+++ ..++
T Consensus 289 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~---~~~~~~i~~p~~~----~~r~~~vsf~~~~-------~~~v 354 (404)
T d1qz9a_ 289 MVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRC---AAHELTLVTPREH----AKRGSHVSFEHPE-------GYAV 354 (404)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHH---TTSCCEECSCSSG----GGBCSEEEEECTT-------HHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHhhc---cCCCEEEECCCCc----cceeeEEEEecCC-------HHHH
Confidence 999999999999999999988888888766544321 1257999988654 4678999998864 2358
Q ss_pred HHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEec-CCCCCHHHHHHHHHhhh
Q 010538 418 EKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSF-GYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 418 ~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~-~~~~t~eev~~l~~~~~ 496 (508)
.+.|.++||.+.. | .++.||||+ |+|||.+||++++++|+
T Consensus 355 ~~~L~~~gi~~~~---r------------------------------------~~~~lRiS~~h~ynt~~did~~~~~L~ 395 (404)
T d1qz9a_ 355 IQALIDRGVIGDY---R------------------------------------EPRIMRFGFTPLYTTFTEVWDAVQILG 395 (404)
T ss_dssp HHHHHTTTEECEE---E------------------------------------TTTEEEEECCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHCCCEEee---c------------------------------------CCCeEEEECCCCCCCHHHHHHHHHHHH
Confidence 8999999997532 1 257899999 57999999999999999
Q ss_pred hhhh
Q 010538 497 DFVN 500 (508)
Q Consensus 497 ~~~~ 500 (508)
++++
T Consensus 396 ~vl~ 399 (404)
T d1qz9a_ 396 EILD 399 (404)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9886
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-36 Score=310.53 Aligned_cols=365 Identities=12% Similarity=0.080 Sum_probs=276.1
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKL 118 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~ 118 (508)
++.+.|. .|.+++++.|++++.... .+ ..+....++++++++.+++++|++.+ |.|+||+|+|++++.
T Consensus 18 ~~~~l~~-pGP~~~~~~Vl~am~~~~-------i~---HRs~~f~~i~~ea~~~l~~llg~~~~-~~ii~~gsgT~a~~~ 85 (388)
T d1h0ca_ 18 PNQLLLG-PGPSNLPPRIMAAGGLQM-------IG---SMSKDMYQIMDEIKEGIQYVFQTRNP-LTLVISGSGHCALEA 85 (388)
T ss_dssp CCCEECS-SSCCCCCHHHHHHHTCCC-------CC---TTSHHHHHHHHHHHHHHHHHHTCCCS-EEEEESSCHHHHHHH
T ss_pred CcCcccc-CCCCCCCHHHHHHhCcCC-------CC---CCCHHHHHHHHHHHHHHHHHhCCCCC-cEEEEcCcHHHHHHH
Confidence 4555555 556677999987763211 11 23456788999999999999999754 479999999999999
Q ss_pred HHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCC
Q 010538 119 VGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPA 198 (508)
Q Consensus 119 ~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~ 198 (508)
++.++ ..+++.+++...+|.+.. +.......+..+..++.+..... +.+.++ +.+ .
T Consensus 86 ~i~~l-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~--~~~-----~ 141 (388)
T d1h0ca_ 86 ALVNV-LEPGDSFLVGANGIWGQR-AVDIGERIGARVHPMTKDPGGHY---------------TLQEVE--EGL-----A 141 (388)
T ss_dssp HHHHH-CCSSCCEEECBSSHHHHH-HHHHHHHHC--CBCCBCCTTCCC---------------CHHHHH--HHH-----H
T ss_pred HHHHh-hccCCceeeecccceeee-eccccccccccccccccCCcccc---------------chHHHH--HHh-----c
Confidence 99999 677888888887777654 44445556777766666554444 233443 221 2
Q ss_pred CCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEecccccc
Q 010538 199 GDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFG 278 (508)
Q Consensus 199 ~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g 278 (508)
.+++++|+++|++|.||.+.|+++|.++|++ +|+++++|++|++|..++|+.++++|++++|+|||++
T Consensus 142 ~~~~~~v~~~~~~n~tG~i~pi~~i~~~~~~------------~g~~~~vD~~qs~g~~~~d~~~~~~D~~~~s~~K~~~ 209 (388)
T d1h0ca_ 142 QHKPVLLFLTHGESSTGVLQPLDGFGELCHR------------YKCLLLVDSVASLGGTPLYMDRQGIDILYSGSQKALN 209 (388)
T ss_dssp HHCCSEEEEESEETTTTEECCCTTHHHHHHT------------TTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTC
T ss_pred cCCcceEEEeeeeeccccccCHHHHHHHhhc------------ccccceeccccccccccccccccccceeccccccccc
Confidence 4578999999999999999999999999998 9999999999999999999999999999999999998
Q ss_pred CCCcceEEEEechhHhhhccccccCceEEecccchh-hhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHH
Q 010538 279 YPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADID-FVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRH 357 (508)
Q Consensus 279 ~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~ 357 (508)
+|.|+|+++++++.++.+.+...++.. ...+... ..........+++.+|+++..++++.++++++.+.|++.+.++
T Consensus 210 gp~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~ 287 (388)
T d1h0ca_ 210 APPGTSLISFSDKAKKKMYSRKTKPFS--FYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQ 287 (388)
T ss_dssp CCTTCEEEEECHHHHHHHTTCSSCCSC--STTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CCCceEEEeecHHHHHhhhhccccccc--cccccchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhcccccccc
Confidence 899999999999998877665433321 0111000 1111123355677899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHH-hhCCCeeccCCCCCc
Q 010538 358 IASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLA-SLSGIQLRTGCFCNP 436 (508)
Q Consensus 358 ~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L-~~~gI~v~~g~~~~~ 436 (508)
..++.+++++.+... ++.++.+... .++..+++|.+++. ++..++.+.| +++||.++.|..|.
T Consensus 288 ~~~l~~~l~~~~~~~-------g~~~~~~~~~----~rs~~i~~~~~p~~----~~~~~~~~~L~~~~gI~v~~G~~~~- 351 (388)
T d1h0ca_ 288 HREAAAYLHGRLQAL-------GLQLFVKDPA----LRLPTVTTVAVPAG----YDWRDIVSYVIDHFDIEIMGGLGPS- 351 (388)
T ss_dssp HHHHHHHHHHHHHHH-------TCCBSSCSGG----GBCTTEEEEECCTT----CCHHHHHHHHHHHHCEECEECCGGG-
T ss_pred ccchhHHHHHHHhhc-------CcccccCCHH----HcCCeEEEEECCCC----CCHHHHHHHHHhcCCEEEeCCchhh-
Confidence 999999999999887 4444433221 24467889998642 3445577666 45699999886442
Q ss_pred hHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEe-cCCCCCHHHHHHHHHhhhhhhhhhh
Q 010538 437 GACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVS-FGYMSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 437 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis-~~~~~t~eev~~l~~~~~~~~~~~~ 503 (508)
+++.+||| +++++|.||||+++++|+++++.+.
T Consensus 352 ----------------------------------~~~~iRis~~g~~~t~edid~li~aL~~~L~~l~ 385 (388)
T d1h0ca_ 352 ----------------------------------TGKVLRIGLLGCNATRENVDRVTEALRAALQHCP 385 (388)
T ss_dssp ----------------------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHSC
T ss_pred ----------------------------------cCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 25789999 7899999999999999999887654
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=9.7e-35 Score=294.26 Aligned_cols=353 Identities=13% Similarity=0.024 Sum_probs=256.5
Q ss_pred CCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCC
Q 010538 48 GATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSH 127 (508)
Q Consensus 48 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~ 127 (508)
+..++++.|++++... + . ...+..+.+.++++|+.+++++|++++...+++|+|+|+++++++.++..++
T Consensus 7 GP~~~~~~V~~A~~~~-----~---~--~~~~~~~~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~~~~ 76 (361)
T d1m32a_ 7 GPLTTSRTVKEAMLFD-----S---C--TWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQ 76 (361)
T ss_dssp SSCCCCHHHHHTTCCC-----C---C--TTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTT
T ss_pred CCCCCCHHHHHHhhhh-----c---c--CCCcHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhhhhc
Confidence 3555678777664221 1 1 1122334567899999999999998872237889999999999999997776
Q ss_pred CCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEE
Q 010538 128 QSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAF 207 (508)
Q Consensus 128 g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~ 207 (508)
+.+++++..+++...... ....+..+..+.......... +.+... ...+++++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~--------~~~~~~~~~v~~ 133 (361)
T d1m32a_ 77 DKVLIVSNGAYGARMVEM--AGLMGIAHHAYDCGEVARPDV-------------QAIDAI--------LNADPTISHIAM 133 (361)
T ss_dssp CCEEEEESSHHHHHHHHH--HHHHTCCEEEEECCTTSCCCH-------------HHHHHH--------HHHCTTCCEEEE
T ss_pred cccceeeehhhhhhHHHH--hhhhhcccccccccccCCccc-------------hhhHHH--------HHhccCccceEE
Confidence 777777776665544332 233344444444332222100 122222 112578999999
Q ss_pred eCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCcceEEE
Q 010538 208 PSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALI 287 (508)
Q Consensus 208 ~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~ 287 (508)
++++|.||.+.|+++|.++||+ +|+++++|++|++|..|+|+.++++||+++|+|||+++|.|+|+++
T Consensus 134 ~~~~~~tG~~~~i~~i~~~~~~------------~g~~~~vDa~qs~G~~~~d~~~~~~D~~~~s~~K~l~gp~G~g~l~ 201 (361)
T d1m32a_ 134 VHSETTTGMLNPIDEVGALAHR------------YGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVI 201 (361)
T ss_dssp ESEETTTTEECCHHHHHHHHHH------------HTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSSEEEEE
T ss_pred Eeeecccccchhhhhhhhhhcc------------cceeeEeecccccCcccccccccccceEEeeecccccCCCCceEEE
Confidence 9999999999999999999998 9999999999999999999999999999999999987799999999
Q ss_pred EechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHH
Q 010538 288 MRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLT-VPAICRHIASLGMYVR 366 (508)
Q Consensus 288 ~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g-~~~i~~~~~~l~~~l~ 366 (508)
++++..++..+...++....... . ...........+|++...++++..++.++.+.| .+.+.++...+++.+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 275 (361)
T d1m32a_ 202 AREQKLAACKGHSRSLSLDLYAQ----W--RCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLV 275 (361)
T ss_dssp EEHHHHTTCTTCCSCSTTCHHHH----H--HHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred echhhhhhhccccccccccchhh----h--ccccccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHH
Confidence 99999998888876653211000 0 001113445567899999999888888766655 5677788888889999
Q ss_pred HHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCC
Q 010538 367 KVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLS 446 (508)
Q Consensus 367 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~ 446 (508)
+.++.. ++.+..++.. +...+++|.+++... .+..++.+.|.++||.+.+|..+
T Consensus 276 ~~~~~~-------g~~~~~~~~~-----rs~~v~~~~~p~~~~--~~~~~~~~~l~~~gi~i~~G~~~------------ 329 (361)
T d1m32a_ 276 AGMRAL-------GFNTLLDDEL-----HSPIITAFYSPEDPQ--YRFSEFYRRLKEQGFVIYPGKVS------------ 329 (361)
T ss_dssp HHHHHT-------TCCBSSCGGG-----BCSSEEEEECCCCTT--CCHHHHHHHHHHTTEECEECCCS------------
T ss_pred HHHhhc-------CCcccCChhh-----cCCcEEEEECCCCCC--CCHHHHHHHHHHCCcEEECCCcC------------
Confidence 998876 4555555432 335677788764322 45567899999999999887532
Q ss_pred hhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 447 HSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 447 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
..+.+|||+..|+|.+||++++++|++.+-|
T Consensus 330 ------------------------~~~~~Ris~~g~~~~~di~~lv~al~~~L~~ 360 (361)
T d1m32a_ 330 ------------------------QSDCFRIGNIGEVYAADITALLTAIRTAMYW 360 (361)
T ss_dssp ------------------------SSCEEEEECCSSCCHHHHHHHHHHHHHHCTT
T ss_pred ------------------------CCCEEEEeCCCCCCHHHHHHHHHHHHHHcCC
Confidence 2578999977789999999999999987644
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.9e-34 Score=294.89 Aligned_cols=365 Identities=12% Similarity=0.063 Sum_probs=270.2
Q ss_pred CCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCC----CCCCceEEEcCChHHHHHHHHh
Q 010538 46 HAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA----SMKDYKCIFTSGATAALKLVGE 121 (508)
Q Consensus 46 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~----~~~~~~i~~t~g~t~al~~~~~ 121 (508)
..+.+++++.|.+++.. +... ..+....+.++++++.+.++++. +++ .|+||+|+|+++++++.
T Consensus 8 ~PGP~~v~~~V~~Am~~---------~~~~-hr~~~f~~~~~~~~~~~r~~~~~~~~~~~~--~i~~t~sgT~a~~~~~~ 75 (382)
T d2bkwa1 8 IPGPIILSGAVQKALDV---------PSLG-HTSPEFVSIFQRVLKNTRAVFKSAAASKSQ--PFVLAGSGTLGWDIFAS 75 (382)
T ss_dssp SSSSCCCCHHHHHTTSC---------CCCC-TTSHHHHHHHHHHHHHHHHHTTCCGGGTCE--EEEEESCTTHHHHHHHH
T ss_pred CCCCCCCCHHHHHHhCc---------ccCC-CCcHHHHHHHHHHHHHHHHHHhhhcCCCCe--EEEEeCcHHHHHHHHHH
Confidence 34566678888776521 1111 12344567778888888888875 444 79999999999999999
Q ss_pred hcC--CCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCC
Q 010538 122 AFP--WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAG 199 (508)
Q Consensus 122 ~l~--~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~ 199 (508)
++. +++|++|++...+|.+.. +...++..|..+..+...+.+... +.+.++ +++ ..
T Consensus 76 ~l~~~~~~gd~vlv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~--~~~-----~~ 133 (382)
T d2bkwa1 76 NFILSKAPNKNVLVVSTGTFSDR-FADCLRSYGAQVDVVRPLKIGESV--------------PLELIT--EKL-----SQ 133 (382)
T ss_dssp HHSCTTCSCCEEEEECSSHHHHH-HHHHHHHTTCEEEEECCSSTTSCC--------------CHHHHH--HHH-----HH
T ss_pred HHHHhcCCCCceEEEEechhhhh-hhhhccccccccccccccCCCCcc--------------chhHHH--HHh-----hh
Confidence 983 467899999888777654 344566678888777544333221 234443 222 14
Q ss_pred CCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccC
Q 010538 200 DAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGY 279 (508)
Q Consensus 200 ~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~ 279 (508)
++++++++++++|.||...|++.+.+++++ ..+++++++|++|++|..|+|+.++++|++++|+|||+++
T Consensus 134 ~~~~~v~~~~~~~~tg~~~~~~~~~~~~~~----------~~~~~~~~vDa~qs~g~~pid~~~~giD~~~~s~~K~l~g 203 (382)
T d2bkwa1 134 NSYGAVTVTHVDTSTAVLSDLKAISQAIKQ----------TSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGA 203 (382)
T ss_dssp SCCSEEEEESEETTTTEECCHHHHHHHHHH----------HCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCC
T ss_pred ccchheeeeeccccccccccchhhhhhccc----------cccceeeeeecccccccccccccccCeeEEeecccccCcC
Confidence 578999999999999999999999998875 2367999999999999999999999999999999999977
Q ss_pred CCcceEEEEechhHhhhccccccCceEEecccchhhhhh--ccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHH
Q 010538 280 PTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKR--RQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRH 357 (508)
Q Consensus 280 P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~ 357 (508)
|+|+|++++++++++.+.+...++....+......+... ......+...+||++..++++..|++++.+.|++.+.++
T Consensus 204 P~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~ 283 (382)
T d2bkwa1 204 PAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDL 283 (382)
T ss_dssp CSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CCchhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 999999999999998888776555432222211111110 111245567799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCch
Q 010538 358 IASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPG 437 (508)
Q Consensus 358 ~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~ 437 (508)
.+++++++++.+.... ++..+.+.... .+...+++|.+++. .++.+.|+++||.++.|..|..
T Consensus 284 ~~~l~~~l~~~l~~~~------~~~~~~~~~~~---~~s~~v~~~~~~~~-------~~~~~~L~~~gi~i~~G~~~~~- 346 (382)
T d2bkwa1 284 HREMSDWFKDSLVNGL------QLTSVSRYPSN---MSAHGLTAVYVADP-------PDVIAFLKSHGVVIAGGIHKDI- 346 (382)
T ss_dssp HHHHHHHHHHHHHTTT------CCEESSCSSST---TBCSSCEEEECSCH-------HHHHHHHHHTTEECBCCCCTTT-
T ss_pred HHHHHHHHHHHhhhcc------cccccccCchh---ccCCcEEEEcCCCH-------HHHHHHHHHCCeEEECCCChhh-
Confidence 9999999999998753 45555443221 12346677777542 3588999999999999865422
Q ss_pred HHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEe-cCCCCCHHHHHHHHHhhhhhhhhhhh
Q 010538 438 ACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVS-FGYMSTFEDAKVNRCSSFDFVNFSQF 504 (508)
Q Consensus 438 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis-~~~~~t~eev~~l~~~~~~~~~~~~~ 504 (508)
.++.+||| +++.++.|+|+++++++..+.+-+|+
T Consensus 347 ---------------------------------~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~~L~~ 381 (382)
T d2bkwa1 347 ---------------------------------GPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR 381 (382)
T ss_dssp ---------------------------------GGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred ---------------------------------cCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHHHCc
Confidence 25789999 77888899999999999887776654
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=100.00 E-value=1.1e-32 Score=280.52 Aligned_cols=358 Identities=12% Similarity=0.038 Sum_probs=269.3
Q ss_pred CeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHH
Q 010538 41 TVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVG 120 (508)
Q Consensus 41 ~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~ 120 (508)
..+|...|.+++++.|++++.... .+..+..+.+.++++|+.+++++|++.. |.|+|++|+|.+++.++
T Consensus 18 ~~~l~~PGP~~v~~~Vl~am~~~~----------~~hr~~ef~~i~~~~r~~l~~ll~~~~~-~~i~~~g~gT~~~~~~~ 86 (377)
T d1vjoa_ 18 SRLLLGPGPSNAHPSVLQAMNVSP----------VGHLDPAFLALMDEIQSLLRYVWQTENP-LTIAVSGTGTAAMEATI 86 (377)
T ss_dssp CCEECSSSCCCCCHHHHHHHSSCC----------CCTTSHHHHHHHHHHHHHHHHHHTCCCS-CEEEESSCHHHHHHHHH
T ss_pred cceeecCCCCCCCHHHHHHhCcCC----------CCCCCHHHHHHHHHHHHHHHHHhCCCCC-eEEEEcCcHHHHHHHHH
Confidence 457777888888999988762211 1123556789999999999999999654 48899999999999999
Q ss_pred hhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCC
Q 010538 121 EAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGD 200 (508)
Q Consensus 121 ~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~ 200 (508)
.++ ..+++.+++....|.+.. +.......+..+..+......... .+..+ . ....+
T Consensus 87 ~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~--~-----~~~~~ 142 (377)
T d1vjoa_ 87 ANA-VEPGDVVLIGVAGYFGNR-LVDMAGRYGADVRTISKPWGEVFS---------------LEELR--T-----ALETH 142 (377)
T ss_dssp HHH-CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCC---------------HHHHH--H-----HHHHH
T ss_pred Hhc-cccccccceeeechhhhh-hhhhhhhhcccccccccCCCCccc---------------chhhh--h-----hhhcC
Confidence 998 677888888877776543 334455566666666554322221 11111 1 11245
Q ss_pred CceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCC
Q 010538 201 AYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYP 280 (508)
Q Consensus 201 ~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P 280 (508)
+++++++++++|.||.+.|+++|.+++|+ +|+++++|++|++|..++|+.++++|++++|.||++++|
T Consensus 143 ~~~~v~~~~~~~~tg~~~~i~~i~~~~~~------------~g~~~~vDa~~~~g~~~~~~~~~~~d~~~~s~~K~~~gp 210 (377)
T d1vjoa_ 143 RPAILALVHAETSTGARQPLEGVGELCRE------------FGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCS 210 (377)
T ss_dssp CCSEEEEESEETTTTEECCCTTHHHHHHH------------HTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSC
T ss_pred cceeeeeeeeeccceeeechhhhhhhhhh------------ccceEEEecchhhhhhhhcccccccceeeecccccccCC
Confidence 78999999999999999999999999998 899999999999999999999999999999999988779
Q ss_pred CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHH
Q 010538 281 TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIAS 360 (508)
Q Consensus 281 ~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~ 360 (508)
+|+|+++++++.++...+...++.. .... ..+. ........+..+++++..+.++..+...+.+.|.+.+.++..+
T Consensus 211 ~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~ 286 (377)
T d1vjoa_ 211 PGASPFTMSSRAIEKLQRRRTKVAN--WYLD-MNLL-GKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQK 286 (377)
T ss_dssp SSCEEEEECHHHHHHHHTCSSCCSC--STTC-HHHH-HHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred CEEEEecchhhHHhhhhccCCCCcc--eeec-cchh-hhccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHH
Confidence 9999999999988776655433321 0110 0110 0011245566778888888888888888888999999999999
Q ss_pred HHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHH-hhCCCeeccCCCCCchHH
Q 010538 361 LGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLA-SLSGIQLRTGCFCNPGAC 439 (508)
Q Consensus 361 l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L-~~~gI~v~~g~~~~~~~~ 439 (508)
+.+++++.+... ++.++.++.. +...+++|.+++. ++..++.+.| +++||.++.|..|.
T Consensus 287 ~~~~l~~~l~~~-------~~~~~~~~~~-----rs~~v~~~~~p~~----~~~~~l~~~L~~~~gI~v~~G~~~~---- 346 (377)
T d1vjoa_ 287 NVEYLWERLEDI-------GLSLHVEKEY-----RLPTLTTVCIPDG----VDGKAVARRLLNEHNIEVGGGLGEL---- 346 (377)
T ss_dssp HHHHHHHHHHHT-------TCCBSSCGGG-----BCSSEEEEECCTT----CCHHHHHHHHHHHHCEECEECCGGG----
T ss_pred Hhhhhhhhhhcc-------CceeecChHh-----cCCeEEEEECCCC----CCHHHHHHHHHhcCCEEEecCcccc----
Confidence 999999999886 4556555442 4477888888642 3455677666 66799999886321
Q ss_pred HhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEe-cCCCCCHHHHHHHHHhhhhhhh
Q 010538 440 AKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVS-FGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 440 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis-~~~~~t~eev~~l~~~~~~~~~ 500 (508)
.++.+||| +++++|.|||++++++|+++++
T Consensus 347 -------------------------------~~~~~Ris~~g~~~t~edi~~lv~al~~~l~ 377 (377)
T d1vjoa_ 347 -------------------------------AGKVWRVGLMGFNSRKESVDQLIPALEQVLR 377 (377)
T ss_dssp -------------------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred -------------------------------cCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence 25789999 5889999999999999998764
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=100.00 E-value=4.4e-32 Score=277.40 Aligned_cols=362 Identities=12% Similarity=0.064 Sum_probs=264.4
Q ss_pred eeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhh
Q 010538 43 YLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEA 122 (508)
Q Consensus 43 yld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~ 122 (508)
+|=+.|.+.+++.|++++.. +.. +..+..+.++++++|+.+++++|++.. +.|+|++|+|.+++.++.+
T Consensus 19 ~l~~PGP~~~~~~V~~Am~~---------~~~-~hr~~ef~~i~~~~r~~L~~ll~~~~~-~~i~~~gsgT~a~ea~~~~ 87 (388)
T d2ch1a1 19 IMMGPGPSNCSKRVLTAMTN---------TVL-SNFHAELFRTMDEVKDGLRYIFQTENR-ATMCVSGSAHAGMEAMLSN 87 (388)
T ss_dssp BCCSSSSCCCCHHHHHHTTS---------CCC-CTTCHHHHHHHHHHHHHHHHHHTCCCS-CEEEESSCHHHHHHHHHHH
T ss_pred eeeeCCCCCCCHHHHHHhCc---------CCC-CCCCHHHHHHHHHHHHHHHHHhCCCCC-eEEEEcCcHHHHHHHHHHH
Confidence 33445566679999877532 111 123566789999999999999999644 1567788999999999999
Q ss_pred cCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCc
Q 010538 123 FPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAY 202 (508)
Q Consensus 123 l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t 202 (508)
+ ..+++.+++....|.+. .+...+++.+..+..++....... +.+..+ .+. ..+++
T Consensus 88 l-~~~~~~vl~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~--~~~-----~~~~~ 143 (388)
T d2ch1a1 88 L-LEEGDRVLIAVNGIWAE-RAVEMSERYGADVRTIEGPPDRPF---------------SLETLA--RAI-----ELHQP 143 (388)
T ss_dssp H-CCTTCEEEEEESSHHHH-HHHHHHHHTTCEEEEEECCTTSCC---------------CHHHHH--HHH-----HHHCC
T ss_pred h-ccccccccccccccccc-cchhhhhhhccccccccccccccc---------------chhhhh--hhh-----ccCCc
Confidence 9 56788888777777654 344556667777777776553333 122222 111 14578
Q ss_pred eEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc
Q 010538 203 NLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG 282 (508)
Q Consensus 203 ~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G 282 (508)
++++++|++|.||.+.|+++|.+++|+ +|+++++|++|++|..|+|+.++++|++++|.||++++|+|
T Consensus 144 ~~v~~~~~~t~tG~~~~~~~i~~~~~~------------~~~~~~vD~~ss~g~~pid~~~~~~d~~~~s~~K~~~gp~G 211 (388)
T d2ch1a1 144 KCLFLTHGDSSSGLLQPLEGVGQICHQ------------HDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPG 211 (388)
T ss_dssp SEEEEESEETTTTEECCCTTHHHHHHH------------TTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSS
T ss_pred ceeeeeecccccccccchhhhcchhcc------------ccceeeeeeeecccccccchhccCceEEEEccccccCCCCe
Confidence 999999999999999999999999998 99999999999999999999999999999999999888999
Q ss_pred ceEEEEechhHhhhccccccCceEEecccchhhhhh-ccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHH
Q 010538 283 LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKR-RQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASL 361 (508)
Q Consensus 283 ~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l 361 (508)
+|+++++++.++.+.+.-.++.. .......+... ..........+|+++..+.++..+++++...+.....++...+
T Consensus 212 ~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~ 289 (388)
T d2ch1a1 212 ITPISISPKALDVIRNRRTKSKV--FYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIEC 289 (388)
T ss_dssp CEEEEECHHHHHHHHTCSSCCSC--GGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred EEEEeccHHHHHhhhcccCcccc--ccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999988765544322211 11110111000 1112344456889999999999999998888899898998888
Q ss_pred HHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHH-hhCCCeeccCCCCCchHHH
Q 010538 362 GMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLA-SLSGIQLRTGCFCNPGACA 440 (508)
Q Consensus 362 ~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L-~~~gI~v~~g~~~~~~~~~ 440 (508)
..++...+... ++....+... .+...+++|.+++. ++..++.+.| +++||.++.|.+|.
T Consensus 290 ~~~~~~~~~~~-------~~~~~~~~~~----~rs~~v~~~~~p~g----~~~~~l~~~l~~~~gI~v~~G~~~~----- 349 (388)
T d2ch1a1 290 AQILYEGLGKM-------GLDIFVKDPR----HRLPTVTGIMIPKG----VDWWKVSQYAMNNFSLEVQGGLGPT----- 349 (388)
T ss_dssp HHHHHHHHHHH-------TCCBSSCSGG----GBCTTEEEEECCTT----CCHHHHHHHHHHHHCBCCBCCCGGG-----
T ss_pred HHHHHhhhhhc-------ccccccCCHH----HhCCeEEEEECCCC----CCHHHHHHHHhhcCCEEEeCCCccc-----
Confidence 88888888765 2333322221 23467889999642 4455677777 45699999986432
Q ss_pred hhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEe-cCCCCCHHHHHHHHHhhhhhhhhhh
Q 010538 441 KYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVS-FGYMSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 441 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis-~~~~~t~eev~~l~~~~~~~~~~~~ 503 (508)
.++.+||| ++++||.|||++++++|+++++-.+
T Consensus 350 ------------------------------~~~~~RIs~~g~~~t~edI~~ll~alke~L~~~~ 383 (388)
T d2ch1a1 350 ------------------------------FGKAWRVGIMGECSTVQKIQFYLYGFKESLKATH 383 (388)
T ss_dssp ------------------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred ------------------------------cCCEEEEcCCcCCCCHHHHHHHHHHHHHHHHhhC
Confidence 25689999 7889999999999999999987654
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=5.5e-31 Score=265.99 Aligned_cols=345 Identities=15% Similarity=0.056 Sum_probs=258.9
Q ss_pred eeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhh
Q 010538 43 YLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEA 122 (508)
Q Consensus 43 yld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~ 122 (508)
||=..|.+++++.|++++.+... ...+....++++++++.++++++.+.+ .+++++|+|.+++.++.+
T Consensus 2 ~L~~PGP~~v~~~V~~am~~~~~----------~hr~~~f~~i~~~~~~~l~~ll~~~~~--~i~~~gsgT~a~e~~~~n 69 (348)
T d1iuga_ 2 WLLTPGPVRLHPKALEALARPQL----------HHRTEAAREVFLKARGLLREAFRTEGE--VLILTGSGTLAMEALVKN 69 (348)
T ss_dssp EECSSSSCCCCHHHHHHHHSCCC----------CTTSHHHHHHHHHHHHHHHHHHTCSSE--EEEEESCHHHHHHHHHHH
T ss_pred cccCCCCCCCCHHHHHHhcCCCC----------CCCCHHHHHHHHHHHHHHHHHhCCCCC--EEEEeCchHHHHHHHHHh
Confidence 56667778889999888754221 112345778899999999999999876 789999999999999999
Q ss_pred cCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCc
Q 010538 123 FPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAY 202 (508)
Q Consensus 123 l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t 202 (508)
+ ..+|+++++....+.+. .|...+++.|..+..+..+..... +++.+ ..+++
T Consensus 70 l-~~~g~~vlv~~~G~f~~-~~~~~a~~~~~~~~~~~~~~g~~~---------------~~~~~-----------~~~~~ 121 (348)
T d1iuga_ 70 L-FAPGERVLVPVYGKFSE-RFYEIALEAGLVVERLDYPYGDTP---------------RPEDV-----------AKEGY 121 (348)
T ss_dssp H-CCTTCEEEEEECSHHHH-HHHHHHHHTTCEEEEEECCTTCCC---------------CTTTS-----------CCSSC
T ss_pred c-ccccccceeecchHHHH-HHHHHHHhcCcccccccccCCCcc---------------ccccc-----------cccCC
Confidence 8 57788777766554333 466778888988888877543222 11222 24678
Q ss_pred eEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc
Q 010538 203 NLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG 282 (508)
Q Consensus 203 ~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G 282 (508)
+.|+++|..|.||.+.|+++|.++|++ ..+++++++|+++++|..|+|+.++++|++++|+||++++|+|
T Consensus 122 ~~v~~~h~eTstG~~~~i~~i~~~~~~----------~~~~~l~~vDavss~g~~~i~~d~~~iD~~~~~sqK~l~gppG 191 (348)
T d1iuga_ 122 AGLLLVHSETSTGALADLPALARAFKE----------KNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPG 191 (348)
T ss_dssp SEEEEESEETTTTEECCHHHHHHHHHH----------HCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSC
T ss_pred CeeEEEecchhhhhhccHHHHHHHHHh----------hhccceeechhhhcccccccccccccCCEEEeccccceecCCc
Confidence 999999999999999999999999975 1246899999999999999999999999999999999866999
Q ss_pred ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHH
Q 010538 283 LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLG 362 (508)
Q Consensus 283 ~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~ 362 (508)
+|++++++++++++++.-+. . ++.............+||++..++++.++++++.+.+. +..++.....
T Consensus 192 ~~~v~~s~~~le~~~~~~~~-------~---dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~~~-~~~~~~~~~~ 260 (348)
T d1iuga_ 192 LGFVALSPRALERLKPRGYY-------L---DLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLE-EHLALKAWQN 260 (348)
T ss_dssp EEEEEECHHHHHTCCCCSST-------T---CHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHH-HHHHHHHHHH
T ss_pred eeeeeechHHHhhhcccccc-------c---chhhhhhhhccCcccccccchHHHHHHHHHHHHHHHHh-HHHHHHHHHH
Confidence 99999999999888764111 1 11111111234456789999999999999998876643 3344444445
Q ss_pred HHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhh
Q 010538 363 MYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKY 442 (508)
Q Consensus 363 ~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~ 442 (508)
..++..++.. ++++.... +...+++|.+++. ++..++.+.|.++||.+.+|..+
T Consensus 261 ~~~~~~~~~~-------gl~~~~~~-------~s~~v~~~~~P~g----~~~~~~~~~l~~~gi~i~~G~~~-------- 314 (348)
T d1iuga_ 261 ALLYGVGEEG-------GLRPVPKR-------FSPAVAAFYLPEG----VPYARVKEAFAQRGAVIAGGQGP-------- 314 (348)
T ss_dssp HHHHHHHHHT-------TCEESCSS-------BCTTCEEEECCTT----CCHHHHHHHHHTTTEECEECCGG--------
T ss_pred HHHhhhhhhh-------hhccChhh-------cCCeEEEEECCCC----CCHHHHHHHHHHCCeEEEcCccc--------
Confidence 5555555554 67765332 2256788998753 45567899999999999887421
Q ss_pred cCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 443 LGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 443 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
.++..+||+...+++.+|++++++.|++.++-
T Consensus 315 ---------------------------l~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~~ 346 (348)
T d1iuga_ 315 ---------------------------LKGKVFRLSLMGAYDRYEALGVAGMFREVLEE 346 (348)
T ss_dssp ---------------------------GTTTEEEECCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 13568999977899999999999999988764
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=4.6e-30 Score=267.54 Aligned_cols=381 Identities=14% Similarity=0.032 Sum_probs=274.2
Q ss_pred hHHHHHHhhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCC--
Q 010538 26 IDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKD-- 103 (508)
Q Consensus 26 ~~~~r~~~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~-- 103 (508)
++.|++ +.-.......+|.+.-++.+++.+.+.+.. .+.. |.. .....+.+.++..++.+++|+++|++..+
T Consensus 41 ~~~i~d-~l~~dg~~~~n~asf~~t~~~~~~~~l~~~-~~~~---N~~-~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~ 114 (450)
T d1pmma_ 41 FQIIND-ELYLDGNARQNLATFCQTWDDENVHKLMDL-SINK---NWI-DKEEYPQSAAIDLRCVNMVADLWHAPAPKNG 114 (450)
T ss_dssp HHHHHH-HGGGSCCGGGBCSCCSCCCCCHHHHHHHHH-TTTC---BTT-CTTTSHHHHHHHHHHHHHHHHHTTCCCCTTS
T ss_pred HHHHHH-HhccCCCccccccccccCCCCHHHHHHHHH-HHhc---CCC-CcccCccHHHHHHHHHHHHHHHhCCCccccC
Confidence 445666 543222234566666688888877665544 3322 222 22333456788889999999999986431
Q ss_pred -ceEEEcCChHHHHHHHHhhcCC-----------CCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC-ccCccccc
Q 010538 104 -YKCIFTSGATAALKLVGEAFPW-----------SHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE-AVDNDGLS 170 (508)
Q Consensus 104 -~~i~~t~g~t~al~~~~~~l~~-----------~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~-~~~~~~l~ 170 (508)
..-++|+|+|+|+++++.+... .....++++...|.++. +.++..|++++.||.++ ++.+
T Consensus 115 ~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~---Kaa~~~gi~~~~v~~~~~~~~~---- 187 (450)
T d1pmma_ 115 QAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWH---KFARYWDVELREIPMRPGQLFM---- 187 (450)
T ss_dssp CCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHHH---HHHHHTTCEEEECCCBTTBCSC----
T ss_pred CCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHHHH---HHHHHcCCCceEeeecCCCCcC----
Confidence 1368999999999987766432 12345777777787555 44555699999999875 4666
Q ss_pred cccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEec
Q 010538 171 ESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDA 250 (508)
Q Consensus 171 ~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~ 250 (508)
|+++++ +++ +++|.+|+.++++|.||.+.|+++|.+++++ ...|.++|++++||+
T Consensus 188 -----------d~~~L~--~~i------~~~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~------~~~a~~~~i~lHVDA 242 (450)
T d1pmma_ 188 -----------DPKRMI--EAC------DENTIGVVPTFGVTYTGNYEFPQPLHDALDK------FQADTGIDIDMHIDA 242 (450)
T ss_dssp -----------CHHHHH--HHC------CTTEEEEECBBSCTTTCBBCCHHHHHHHHHH------HHHHHCCCCCEEEEC
T ss_pred -----------cHHHHH--HHh------hhCceEEEeeeeeccCCCccccchhhHHHHH------HHHHhccCcEEEeeh
Confidence 789999 554 5788999999999999999999999988752 123445899999999
Q ss_pred cccCCCCCCC-------CCCCCCcEEEEeccccccCCCcceEEEEechhHhhh----ccccccCceEEecccchhhhhhc
Q 010538 251 AKGCVTQPPD-------LSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLL----KNTYFSGGTVAASIADIDFVKRR 319 (508)
Q Consensus 251 a~~~g~~~~d-------~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l----~~~~~g~~~~~~~~~~~~~~~~~ 319 (508)
+++.+..|++ +.-.++|++++|+|||+++|.|+|+++++++....- .+.+.++..
T Consensus 243 A~gG~~~p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g~g~l~~r~~~~~~~~~~~~~~yl~~~~-------------- 308 (450)
T d1pmma_ 243 ASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQI-------------- 308 (450)
T ss_dssp TTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEEEETTEEE--------------
T ss_pred hhccceeeeechhhhhhhcccceeEeecChhhccCCCCCeeEEEecChhhhhhhcccccCcCCCCc--------------
Confidence 9987655433 333479999999999887799999999987653111 111122211
Q ss_pred cCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCce
Q 010538 320 QGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSM 399 (508)
Q Consensus 320 ~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (508)
......++.+...+.+++.++..+...|++++.++..+++++|.+.|++. ++++++.+... ..+.++
T Consensus 309 ---~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~------~~~el~~~~~p----~~~l~~ 375 (450)
T d1pmma_ 309 ---GTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKL------GPYEFICTGRP----DEGIPA 375 (450)
T ss_dssp ---EECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------SCEEEEEECCT----TTBSSE
T ss_pred ---CCCcccCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhC------CCeEEEeCCCC----CCceEE
Confidence 12223455666677788888898888999999999999999999999998 47998876442 234688
Q ss_pred EEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEec
Q 010538 400 VSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSF 479 (508)
Q Consensus 400 v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~ 479 (508)
|+|++.+.....++..++.+.|+++|.++..-.. ++. ......+|+++
T Consensus 376 V~Fr~~~~~~~~~~~~~l~~~L~~~Gw~v~~~~~--p~~------------------------------~~~~~~lRvvv 423 (450)
T d1pmma_ 376 VCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTL--GGE------------------------------ATDIVVMRIMC 423 (450)
T ss_dssp EEEEECTTCCCSSCHHHHHHHHHTTTCBCCEEEC--CTT------------------------------CTTCEEEEEEC
T ss_pred EEEecCCcccCCCCHHHHHHHHHHcCCeeeccCc--CCC------------------------------cCCcEEEEEEc
Confidence 9999987665667778899999999988754211 110 01246899999
Q ss_pred CCCCCHHHHHHHHHhhhhhhhhhh
Q 010538 480 GYMSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 480 ~~~~t~eev~~l~~~~~~~~~~~~ 503 (508)
...+|.++++.|++.|++.+++++
T Consensus 424 ~~~~t~e~~d~lv~dl~~~v~~l~ 447 (450)
T d1pmma_ 424 RRGFEMDFAELLLEDYKASLKYLS 447 (450)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888775
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.96 E-value=1.2e-28 Score=249.04 Aligned_cols=308 Identities=14% Similarity=0.025 Sum_probs=216.5
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCcc
Q 010538 85 IVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAV 164 (508)
Q Consensus 85 ~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~ 164 (508)
+.+.+++.+|+++|++ ++++|+|+|+|+.+++.++ .++||+||++..+|+++.... +..|++++.+|.+...
T Consensus 48 l~~~~~~~~A~~~g~e----~~~~t~g~t~a~~~~~~al-~~~gd~Vi~~~~~h~s~~~~~---~~~g~~v~~v~~~~~~ 119 (364)
T d2e7ja1 48 IHDFIHNQLPKFLGCD----VARVTNGAREAKFAVMHSL-AKKDAWVVMDENCHYSSYVAA---ERAGLNIALVPKTDYP 119 (364)
T ss_dssp HHHHHHTHHHHHTTSS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEETTCCHHHHHHH---HHTTCEEEEECCCCTT
T ss_pred HHHHHHHHHHHHhCcC----EEEEECcHHHHHHHHHHHH-hCCCcEEEeecccccccchHH---HhccceEEEeeecccc
Confidence 5677899999999974 6899999999999999999 689999999999998876554 3469999999986533
Q ss_pred --CccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC
Q 010538 165 --DNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG 242 (508)
Q Consensus 165 --~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~ 242 (508)
.+ |+++++ +.+++. ....++++|++++++|+||.+.|+++|.++|++ +
T Consensus 120 ~~~i---------------~~~~l~--~~i~~~-~k~~~~~lv~i~~~~n~tG~~~~l~~I~~ia~~------------~ 169 (364)
T d2e7ja1 120 DYAI---------------TPENFA--QTIEET-KKRGEVVLALITYPDGNYGNLPDVKKIAKVCSE------------Y 169 (364)
T ss_dssp TCCC---------------CHHHHH--HHHHHH-TTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHT------------T
T ss_pred cccc---------------CHHHHH--hhhhhh-cccCCceEEEeecCCCCCceeecchhheecccc------------c
Confidence 33 577777 555331 123567899999999999999999999999998 9
Q ss_pred CeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCc
Q 010538 243 RWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGV 322 (508)
Q Consensus 243 g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~ 322 (508)
|+++++|++|+.|+.++++.++++|++++|+||++++|.|+|+++++++.++.+........ ..
T Consensus 170 ~i~livD~a~~~g~~~~~~~~~g~D~~~~S~~K~~~~~g~~g~l~~~~~~~~~~~~~~~~~~----------------~~ 233 (364)
T d2e7ja1 170 DVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYK----------------NK 233 (364)
T ss_dssp TCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSCT----------------TS
T ss_pred cchhhccccchhhhhhhcccccccceeeeccccccCCCCCEEEEEECHHHHHHHHhhccccC----------------cc
Confidence 99999999999999999999999999999999999967669999999987665433211110 01
Q ss_pred cccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEE
Q 010538 323 EELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSF 402 (508)
Q Consensus 323 ~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 402 (508)
...+..++.+....+++.++++...+. ++...+ ..+.++++.+++.++ ++.++.+... ....+.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~-~~~~~~~~~~~l~~~-------g~~~~~~~~~------~~~~~~~ 298 (364)
T d2e7ja1 234 EVELLGCTARGATIITLMASFPHVRER-IKRWDE-EVEKARRFAAEMEKL-------GIKQLGDNPH------NHDLMFF 298 (364)
T ss_dssp BGGGTTCCCCSHHHHHHHHHHHHHHHH-GGGHHH-HHHHHHHHHHHHHHT-------TCEEESSSSC------CSSEEEE
T ss_pred cccccccccchhHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHc-------CCeecCCCCC------CcceEEE
Confidence 222333455556666676777765442 333333 346777888999887 5666655432 1444444
Q ss_pred EeeCCCC----CccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEe
Q 010538 403 NLKRPDG----SWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVS 478 (508)
Q Consensus 403 ~~~~~~~----~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis 478 (508)
..+.... ..-....+...|...|+.... + + ....+|++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~-------------------------------g-~~~~~~~~ 340 (364)
T d2e7ja1 299 HAEVLYEISKKAKGGRFFLYRELKSRKIHGIK------P-------------------------------G-LTRYFKLS 340 (364)
T ss_dssp ECHHHHHHHHHSSSGGGHHHHHHHHTTEECSC------T-------------------------------T-CCSEEEEE
T ss_pred eccchHHHHHHhhccchHHHHHHHhcCCceec------C-------------------------------C-CcceEEEe
Confidence 4331100 000001234445555544211 0 0 13456776
Q ss_pred cCCCCCHHHHHHHHHhhhhhhh
Q 010538 479 FGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 479 ~~~~~t~eev~~l~~~~~~~~~ 500 (508)
++.+|.|||++++++|+++++
T Consensus 341 -~~~~t~edid~~~~~l~ei~~ 361 (364)
T d2e7ja1 341 -TYGLSDEEVDYVLNAFKEIIE 361 (364)
T ss_dssp -CTTCCHHHHHHHHHHHHHHHH
T ss_pred -ccCCCHHHHHHHHHHHHHHHH
Confidence 345799999999999999875
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.96 E-value=1.9e-27 Score=241.45 Aligned_cols=335 Identities=15% Similarity=0.052 Sum_probs=236.5
Q ss_pred CCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHH
Q 010538 39 NGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALK 117 (508)
Q Consensus 39 ~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~ 117 (508)
.+.|.|.-+... ++|+.+++++.+ .+.... .|... ....++|+.+|++++++++ +|++|+|+++++.
T Consensus 25 ~~~I~ls~g~p~~~~p~~i~~al~~-~l~~~~-----~Y~~~----~G~~elr~aiA~~~~~~~~--~Iiit~G~~~al~ 92 (368)
T d1v2da_ 25 LGAVNLGQGFPSNPPPPFLLEAVRR-ALGRQD-----QYAPP----AGLPALREALAEEFAVEPE--SVVVTSGATEALY 92 (368)
T ss_dssp HTCEECCCCSCSSCCCHHHHHHHHH-HTTTSC-----SCCCT----TCCHHHHHHHHHHHTSCGG--GEEEESSHHHHHH
T ss_pred CCCEEecCCCCCCCCCHHHHHHHHH-Hhhccc-----CCCCC----cCCHHHHHHHHhhcccCCc--ceeeccchHHHHH
Confidence 457777655433 456777777644 333221 12211 1145678999999999998 8999999999999
Q ss_pred HHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCC
Q 010538 118 LVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP 197 (508)
Q Consensus 118 ~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~ 197 (508)
+++.++ ..+|+.|+++...|+.+....+. .|.+++.++++...... .+|++.++ +++
T Consensus 93 ~~~~~l-~~~~d~v~~~~p~~~~~~~~~~~---~g~~~~~~~~~~~~~~~------------~~d~~~l~--~~~----- 149 (368)
T d1v2da_ 93 VLLQSL-VGPGDEVVVLEPFFDVYLPDAFL---AGAKARLVRLDLTPEGF------------RLDLSALE--KAL----- 149 (368)
T ss_dssp HHHHHH-CCTTCEEEEEESCCTTHHHHHHH---TTCEEEEEECEEETTEE------------ECCHHHHH--TTC-----
T ss_pred HHhhcc-ccccccccccCCcchhhhhHHHh---cCCccceeccccccccc------------cCCHHHHH--Hhh-----
Confidence 999999 67889999998888877665544 58888888775322211 12788898 554
Q ss_pred CCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCC-----CCCcEEEEe
Q 010538 198 AGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSK-----YPVDFVVMS 272 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~-----~~~D~~~~S 272 (508)
.+.++++++++++||||.+++.+++.++++ +|+++|+++++|+++........... .+..+++.|
T Consensus 150 -~~~~~~i~~~~p~NPtG~~~~~~~l~~l~~---------~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (368)
T d1v2da_ 150 -TPRTRALLLNTPMNPTGLVFGERELEAIAR---------LARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGS 219 (368)
T ss_dssp -CTTEEEEEEESSCTTTCCCCCHHHHHHHHH---------HHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEE
T ss_pred -ccCceEEEEcCCCCcccccCCHHHHHHHHH---------HHHHcCCeeeechhhhhhcccccccccccccccccceeec
Confidence 567899999999999999999777776665 55569999999999876444333322 134567788
Q ss_pred ccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH-hc
Q 010538 273 FYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN-SL 349 (508)
Q Consensus 273 ~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~-~~ 349 (508)
++|.++.| | +|+++.++++++.+..... ......+.....++..++.... ..
T Consensus 220 ~sk~~~~~-G~R~g~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~q~~~~~~l~~~~~~~ 274 (368)
T d1v2da_ 220 AGKRLEAT-GYRVGWIVGPKEFMPRLAGMRQ------------------------WTSFSAPTPLQAGVAEALKLARREG 274 (368)
T ss_dssp HHHHTTCG-GGCCEEEECCTTTHHHHHHHHH------------------------HHTSSCCHHHHHHHHHHHHHHHHTT
T ss_pred cccccccc-ccccccccccccccchhhhhhh------------------------ccccccccccccccccccccccchh
Confidence 88877745 5 8999999988766554311 1112233333334444544322 23
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeec
Q 010538 350 TVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLR 429 (508)
Q Consensus 350 g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~ 429 (508)
.++.+++++++.++++.+.|++. |+++..|.+ ++++++++++.+ ..++|+++||.++
T Consensus 275 ~~~~~~~~~~~~~~~l~~~l~~~-------g~~~~~p~g--------~~~~~~~l~~~~--------~~~ll~~~gI~v~ 331 (368)
T d1v2da_ 275 FYEALREGYRRRRDLLAGGLRAM-------GLRVYVPEG--------TYFLMAELPGWD--------AFRLVEEARVALI 331 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-------TCCEECCSB--------SSEEEEECTTCC--------HHHHHHHTCEECE
T ss_pred hHHHHHHHHHHhhhhhhhhHHhc-------CcEEecCCc--------eeEEEEeCCccH--------HHHHHHhCCEEEE
Confidence 46888888999999999999987 688776654 688999887532 4567889999999
Q ss_pred cCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 430 TGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 430 ~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
+|+.|.... ..++++|||++ ++.|++++.++.|++++
T Consensus 332 pg~~F~~~~-------------------------------~~~~~iRis~~--~~~e~i~~ai~rL~~~l 368 (368)
T d1v2da_ 332 PASAFYLED-------------------------------PPKDLFRFAFC--KTEEELHLALERLGRVV 368 (368)
T ss_dssp EGGGGCSSS-------------------------------CCTTEEEEECC--SCHHHHHHHHHHHHHHC
T ss_pred echhhCCCC-------------------------------CCCCEEEEEec--CCHHHHHHHHHHHHHhC
Confidence 997664321 13689999987 58999999999988764
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.95 E-value=1.8e-27 Score=240.20 Aligned_cols=354 Identities=11% Similarity=-0.009 Sum_probs=233.2
Q ss_pred CCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCcc---chhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHH
Q 010538 40 GTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQS---DISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAAL 116 (508)
Q Consensus 40 ~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al 116 (508)
..||.-++|.+++|++|++++.+.+. ++...+.+.. ..+....++++++|+.+++++|++.+ |.|++++|+++++
T Consensus 2 ~~~~nF~pGP~~~p~~V~~a~~~~~~-~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~-~~i~~~~gt~~~~ 79 (360)
T d1w23a_ 2 KQVFNFNAGPSALPKPALERAQKELL-NFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPND-YQILFLQGGASLQ 79 (360)
T ss_dssp CCCEECCSSSCCCCHHHHHHHHHTSS-SSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTT-EEEEEESSHHHHH
T ss_pred CceeEeCCCCcCCCHHHHHHHHHHHH-hhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCC-CEEEEeCCcHHHH
Confidence 36786677888889999999876543 3222222211 12456788999999999999999764 5789999999888
Q ss_pred HHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCC
Q 010538 117 KLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERD 196 (508)
Q Consensus 117 ~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~ 196 (508)
+.+.......+++.+++...++. ...+...++..+..+..+........ .++.++ ..+
T Consensus 80 ~~~~~~~~~~~~~~v~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~--~~~---- 137 (360)
T d1w23a_ 80 FTMLPMNLLTKGTIGNYVLTGSW-SEKALKEAKLLGETHIAASTKANSYQ---------------SIPDFS--EFQ---- 137 (360)
T ss_dssp HHHHHHHHCCTTCEEEEEECSHH-HHHHHHHHHTTSEEEEEEECGGGTSC---------------SCCCGG--GCC----
T ss_pred HHHHHhhhcccCcccceeeccch-hhhhHHHHHHhhhcceeecccccccc---------------chhhhh--hcc----
Confidence 87777665677777777655443 44555666677766666554432221 122233 111
Q ss_pred CCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEecccc
Q 010538 197 PAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKI 276 (508)
Q Consensus 197 ~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~ 276 (508)
+.+.+++..|.||.+.|+++|.++||+ +|+++++|++|++|+.++|+.++++|+++++.||+
T Consensus 138 ------~~~~~~~~~~~tg~~~~~~~i~~~~~~------------~g~l~ivDavqs~g~~~id~~~~~vd~~~~~~~k~ 199 (360)
T d1w23a_ 138 ------LNENDAYLHITSNNTIYGTQYQNFPEI------------NHAPLIADMSSDILSRPLKVNQFGMIYAGAQKNLG 199 (360)
T ss_dssp ------CCTTEEEEEEESEETTTTEECSSCCCC------------CSSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTS
T ss_pred ------cccccceeEecCCccccceeeeecccc------------ceeeEEeeccccccccccccccccceEEeeccccc
Confidence 222345677889999999999988887 99999999999999999999999999999988886
Q ss_pred ccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcC-hHHHH
Q 010538 277 FGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLT-VPAIC 355 (508)
Q Consensus 277 ~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g-~~~i~ 355 (508)
++ | |.|+++.++...+...+....+.. .... .......++......+...++.++.+.+ ...+.
T Consensus 200 ~~-~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (360)
T d1w23a_ 200 PS-G-VTVVIVKKDLLNTKVEQVPTMLQY-------ATHI------KSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIA 264 (360)
T ss_dssp CT-T-CEEEEEEHHHHCSCCTTCCGGGCH-------HHHH------HTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred cC-C-cceeeEechhhhcccccCCcchhh-------hhhh------hhhhhcccccceeeechhHHHHHHhhhhhhHHHH
Confidence 55 4 567777666554322222111110 0000 1122334555555555554555444443 35555
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCC
Q 010538 356 RHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCN 435 (508)
Q Consensus 356 ~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~ 435 (508)
++................. ...+...+. .++..+++|++++. .+..++.+.|.++||.++.|+.|.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-----~rS~~vvsf~i~~~----~~~~~~~~~l~~~GI~~~~G~~~~ 330 (360)
T d1w23a_ 265 KQNEEKAKIIYDTIDESNG-----FYVGHAEKG-----SRSLMNVTFNLRNE----ELNQQFLAKAKEQGFVGLNGHRSV 330 (360)
T ss_dssp HHHHHHHHHHHHHHHTTTT-----SSEESSCGG-----GBCSSEEEEECSSH----HHHHHHHHHHHHTTEESCBCCTTT
T ss_pred HHHHHHHHHHHHHHhhccc-----ccccCCChh-----hcceeEEEEEcCCC----ccHHHHHHHHHHCCCeeeeCCCcc
Confidence 5555555555555544421 223333332 23467899998753 233468889999999999886542
Q ss_pred chHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 436 PGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 436 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
+.+|+|+..++|.|||++|++.|++|.+.
T Consensus 331 -------------------------------------ggiRiS~~~~~t~e~V~~Li~~~~~~~~~ 359 (360)
T d1w23a_ 331 -------------------------------------GGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp -------------------------------------CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------CcEEEEeeCCCCHHHHHHHHHHHHHHHhc
Confidence 34999998889999999999999998764
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=99.95 E-value=8.7e-27 Score=238.54 Aligned_cols=355 Identities=12% Similarity=0.051 Sum_probs=236.3
Q ss_pred chHHHHHHhhccCCCCCeeeeCCCCCCC-CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC--CCC
Q 010538 25 SIDQIRATEFKRLENGTVYLDHAGATLY-SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN--ASM 101 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~~~iyld~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~--~~~ 101 (508)
.+....+ ++..-+.++|.|..+-...+ |+.+++++.+.. .+ ....|.......++.+++.+.+.+..| +++
T Consensus 17 ~i~~~a~-~~~~~g~~vi~l~~G~p~~~~p~~v~~a~~~~~-~~----~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~ 90 (388)
T d1j32a_ 17 IIDAKAK-AMKAEGIDVCSFSAGEPDFNTPKHIVEAAKAAL-EQ----GKTRYGPAAGEPRLREAIAQKLQRDNGLCYGA 90 (388)
T ss_dssp TTHHHHH-HHHTTTCCCEECCCSSCSSCCCHHHHHHHHHHH-HT----TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCG
T ss_pred HHHHHHH-HHHHCCCCeEECCCCCCCCCCCHHHHHHHHHHH-hc----CCCCCCCCCCCHHHHHHHHHHHHHhcccCCCC
Confidence 3444443 44433357888886654433 566667664433 22 112232222223344444444444444 566
Q ss_pred CCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCcccccccccccccccc
Q 010538 102 KDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISL 181 (508)
Q Consensus 102 ~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~ 181 (508)
+ +|++|+|+++|+.+++.++ ..+|+.|+++...|+++...+ +..|.+++.++...+... .+
T Consensus 91 ~--~i~it~G~~~al~~~~~~~-~~~gd~Vlv~~P~y~~~~~~~---~~~~~~~v~~~~~~~~~~-------------~~ 151 (388)
T d1j32a_ 91 D--NILVTNGGKQSIFNLMLAM-IEPGDEVIIPAPFWVSYPEMV---KLAEGTPVILPTTVETQF-------------KV 151 (388)
T ss_dssp G--GEEEESHHHHHHHHHHHHH-CCTTCEEEEESSCCTHHHHHH---HHTTCEEEEECCCGGGTT-------------CC
T ss_pred c--eEEEcCCHHHHHHHHHHHH-hCCCCEEEEcCCCcHHHHHHH---HHhcCeEEEEeccccccc-------------CC
Confidence 6 8999999999999999999 688999999987777665444 446888888887654332 12
Q ss_pred chhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC----C
Q 010538 182 LPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT----Q 257 (508)
Q Consensus 182 d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~----~ 257 (508)
|+++++ +++ +++++++++++++||||.+++.+++.++++ +|+++|++||+|++++.-. .
T Consensus 152 d~~~l~--~~~------~~~~~~~~~~~P~NPTG~~~~~~~~~~l~~---------~~~~~~~~iI~De~Y~~~~~~~~~ 214 (388)
T d1j32a_ 152 SPEQIR--QAI------TPKTKLLVFNTPSNPTGMVYTPDEVRAIAQ---------VAVEAGLWVLSDEIYEKILYDDAQ 214 (388)
T ss_dssp CHHHHH--HHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHH---------HHHHHTCEEEEECTTTTCBCTTCC
T ss_pred CHHHHH--HhC------CCCCeEEEECCCCCCCCcccchhhhhhhhc---------ccccCCeEEEchhhhhcccccCCC
Confidence 688888 444 578899999999999999999998888877 5667999999999985421 2
Q ss_pred CCCCCCC-----CCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCC
Q 010538 258 PPDLSKY-----PVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGT 330 (508)
Q Consensus 258 ~~d~~~~-----~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt 330 (508)
+..+... +..+++.|++|.|+ .+| +||+++++++++.+..... .....
T Consensus 215 ~~s~~~~~~~~~~~~i~~~S~SK~~~-~~GlRvG~~~~~~~~~~~~~~~~~------------------------~~~~~ 269 (388)
T d1j32a_ 215 HLSIGAASPEAYERSVVCSGFAKTYA-MTGWRVGFLAGPVPLVKAATKIQG------------------------HSTSN 269 (388)
T ss_dssp CCCGGGSCHHHHHTEEEEEESTTTTT-CTTTCCEEEECCHHHHHHHHHHHH------------------------TTTCS
T ss_pred CCCHHHhCcccccceeEecCChhhhh-cchhHeEEEEECHHHHHHHHHhhh------------------------hcccc
Confidence 2222211 23588999999998 447 8999999988765543311 11122
Q ss_pred CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCC
Q 010538 331 ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGS 410 (508)
Q Consensus 331 ~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 410 (508)
++.....++..++... +..+++.++++++.++++.+.|++.+ ++++..|.+ +.++|++++...
T Consensus 270 ~~~~~q~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~------g~~~~~p~g--------g~~l~~~l~~~~-- 332 (388)
T d1j32a_ 270 VCTFAQYGAIAAYENS-QDCVQEMLAAFAERRRYMLDALNAMP------GLECPKPDG--------AFYMFPSIAKTG-- 332 (388)
T ss_dssp CCHHHHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHHHHHHTCT------TCBCCCCCB--------TTEECCBCGGGT--
T ss_pred ccHHHHHHHhhcccch-HHHHHHHHHHHHHHHHHHHHHHHhCC------CCEecCCCc--------eEEEEEECCCCC--
Confidence 3333333333333321 12367778888899999999998873 677665543 678888876432
Q ss_pred ccCHHHHH-HHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHH
Q 010538 411 WFGYREVE-KLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAK 489 (508)
Q Consensus 411 ~~~~~~l~-~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~ 489 (508)
.+..++. ++++++||.+.+|..|. .++++|+|++ .+.|+++
T Consensus 333 -~~~~~~~~~ll~~~gV~v~pG~~F~-----------------------------------~~~~~Rls~~--~~~e~l~ 374 (388)
T d1j32a_ 333 -RSSLDFCSELLDQHQVATVPGAAFG-----------------------------------ADDCIRLSYA--TDLDTIK 374 (388)
T ss_dssp -CCHHHHHHHHHHHHCEECEEGGGGT-----------------------------------CTTBEEEECC--SCHHHHH
T ss_pred -CCHHHHHHHHHHhCCEEEEeccccC-----------------------------------CCCeEEEEEe--CCHHHHH
Confidence 2223444 45578899999987442 1578999997 5889999
Q ss_pred HHHHhhhhhhhh
Q 010538 490 VNRCSSFDFVNF 501 (508)
Q Consensus 490 ~l~~~~~~~~~~ 501 (508)
..++.|+++++-
T Consensus 375 ~al~rl~~~l~~ 386 (388)
T d1j32a_ 375 RGMERLEKFLHG 386 (388)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988888887764
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.95 E-value=1.5e-26 Score=236.22 Aligned_cols=340 Identities=11% Similarity=0.070 Sum_probs=229.2
Q ss_pred CCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC-------CCCCCceEEEcC
Q 010538 39 NGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN-------ASMKDYKCIFTS 110 (508)
Q Consensus 39 ~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~-------~~~~~~~i~~t~ 110 (508)
+++|.|..+-.. ++|+.+.+++.+.+ .+ ....|..... ..++|+.+|++++ .+++ +|++|+
T Consensus 25 ~dvi~l~~g~p~~~~p~~v~~~~~~a~-~~----~~~~Y~~~~G----~~~lr~aia~~~~~~~~~~~~~~~--~i~~t~ 93 (388)
T d1gdea_ 25 KDVISLGIGEPDFDTPQHIKEYAKEAL-DK----GLTHYGPNIG----LLELREAIAEKLKKQNGIEADPKT--EIMVLL 93 (388)
T ss_dssp TTCEECCCCSCCSCCCHHHHHHHHHHH-HT----TCCSCCCTTC----CHHHHHHHHHHHHHHHCCCCCTTT--SEEEES
T ss_pred CCeEECCCCCCCCCCCHHHHHHHHHHH-hc----CccCCCCCcC----CHHHHHHHHHHHHhhccccCCChh--eeeecc
Confidence 689999877654 34566666665543 22 1112222211 3445666666542 3445 799999
Q ss_pred ChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCC
Q 010538 111 GATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGA 190 (508)
Q Consensus 111 g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~ 190 (508)
|+++++.+++.++ ..+|+.|+++...|+.+....+. .|.+++.+|.+.+... .+|+++++ +
T Consensus 94 G~~~~l~~~~~~l-~~~gd~vlv~~P~y~~~~~~~~~---~g~~~~~~~~~~~~~~-------------~~d~~~l~--~ 154 (388)
T d1gdea_ 94 GANQAFLMGLSAF-LKDGEEVLIPTPAFVSYAPAVIL---AGGKPVEVPTYEEDEF-------------RLNVDELK--K 154 (388)
T ss_dssp STTHHHHHHHTTT-CCTTCEEEEEESCCTTHHHHHHH---HTCEEEEEECCGGGTT-------------CCCHHHHH--H
T ss_pred CcchHHHHHHHHh-cCCCCEEEECCCCcHHHHHHHHH---cCCEEEEeecccccCC-------------CCCHHHHH--H
Confidence 9999999999998 68899999999888877666554 5999999998754322 22788888 4
Q ss_pred CCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCC----CCCCCCCCC--
Q 010538 191 SFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCV----TQPPDLSKY-- 264 (508)
Q Consensus 191 ~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g----~~~~d~~~~-- 264 (508)
++ +++++++++++++||||.+++.+++.++++ +|++++++||+|++++.- .....+...
T Consensus 155 ~~------~~~~~~i~~~~P~NPtG~~~s~~~~~~l~~---------~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~ 219 (388)
T d1gdea_ 155 YV------TDKTRALIINSPCNPTGAVLTKKDLEEIAD---------FVVEHDLIVISDEVYEHFIYDDARHYSIASLDG 219 (388)
T ss_dssp HC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHH---------HHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTT
T ss_pred hC------ccCCeEEEECCCcCCCCCcCCHHHHHHHHH---------HHHHcCCEEEEEcCChhhhhccCCCCChhhccC
Confidence 44 567899999999999999999888777766 566699999999998742 112222211
Q ss_pred --CCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHH
Q 010538 265 --PVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIR 340 (508)
Q Consensus 265 --~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~ 340 (508)
+..+++.|++|.||.| | +||++++++.++.+...... ...+.+.....++.
T Consensus 220 ~~~~~i~~~S~SK~~~~~-GlR~G~ii~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~ 274 (388)
T d1gdea_ 220 MFERTITVNGFSKTFAMT-GWRLGFVAAPSWIIERMVKFQMY------------------------NATCPVTFIQYAAA 274 (388)
T ss_dssp CGGGEEEEEESTTTTTCG-GGCCEEEECCHHHHHHHHHHHHT------------------------TTCSCCHHHHHHHH
T ss_pred CCCeEEEEeCChhhccCc-cccEEEEEeeccchhhhhhcccc------------------------ccccccccchhhHH
Confidence 3458899999999844 6 89999999887765543111 11222333333333
Q ss_pred HHHHHH-HhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHH
Q 010538 341 HGFNLI-NSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEK 419 (508)
Q Consensus 341 ~al~~~-~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~ 419 (508)
.+++.. ....+....+++.+..+.+.+.+... ++....|.+ +.++|+++++.. .+..++.+
T Consensus 275 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~p~g--------g~fl~~~l~~~~---~~~~~~~~ 336 (388)
T d1gdea_ 275 KALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM-------GLPTVKPKG--------AFYIFPRIRDTG---LTSKKFSE 336 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TCCCCCCCB--------TTEECCBCGGGT---CCHHHHHH
T ss_pred HHHhhccchhHHHHHHHHHHHhhhhhhhhhhhc-------cccccCCCc--------eEEEEEECCCCC---CCHHHHHH
Confidence 343210 01124666677778888888888775 455444443 678888886421 23334554
Q ss_pred -HHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 420 -LASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 420 -~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
+|+++||.+.+|..|... .++++|||++ ++.|+++..++.|+++
T Consensus 337 ~ll~e~gV~v~PG~~F~~~---------------------------------~~~~iRis~~--~~~e~l~~al~rL~~~ 381 (388)
T d1gdea_ 337 LMLKEARVAVVPGSAFGKA---------------------------------GEGYVRISYA--TAYEKLEEAMDRMERV 381 (388)
T ss_dssp HHHHHTCEECEEGGGGCGG---------------------------------GTTBEEEECC--SCHHHHHHHHHHHHHH
T ss_pred HHHHhCCEEEEechhhCCC---------------------------------CCCEEEEEec--CCHHHHHHHHHHHHHH
Confidence 567889999999766432 2678999997 4789999999998888
Q ss_pred hhh
Q 010538 499 VNF 501 (508)
Q Consensus 499 ~~~ 501 (508)
++.
T Consensus 382 l~e 384 (388)
T d1gdea_ 382 LKE 384 (388)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=99.95 E-value=4.2e-26 Score=232.78 Aligned_cols=340 Identities=11% Similarity=0.028 Sum_probs=227.9
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC--CCCCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN--ASMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~--~~~~~~~i~~t~g~t~a 115 (508)
.+.|.|..+-... +|+.+.+++.+.+... ...|....+..++.+++.+.+.+..+ ++++ +|++|+|+++|
T Consensus 31 ~~vi~l~~g~p~~~~p~~i~~a~~~~~~~~-----~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~--~i~it~G~~~a 103 (382)
T d1b5pa_ 31 VDLVALTAGEPDFDTPEHVKEAARRALAQG-----KTKYAPPAGIPELREALAEKFRRENGLSVTPE--ETIVTVGGSQA 103 (382)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHHTT-----CCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGG--GEEEESHHHHH
T ss_pred CCeEECCCCCCCCCCCHHHHHHHHHHHhcC-----CcCCCCCCCCHHHHHHHHhhhhhhcccccccc--cceecCCHHHH
Confidence 5688888776543 4566667665544322 12232222223334444444444334 5677 89999999999
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPER 195 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~ 195 (508)
+.+++.++ ..+|+.|++....|+++... ++..|.+++.+|.+..... .+|+++++ +++
T Consensus 104 l~~~~~~l-~~~gd~vl~~~P~y~~~~~~---~~~~g~~~~~v~~~~~~~~-------------~~d~~~l~--~~~--- 161 (382)
T d1b5pa_ 104 LFNLFQAI-LDPGDEVIVLSPYWVSYPEM---VRFAGGVVVEVETLPEEGF-------------VPDPERVR--RAI--- 161 (382)
T ss_dssp HHHHHHHH-CCTTCEEEEEESCCTHHHHH---HHHTTCEEEEEECCGGGTT-------------CCCHHHHH--TTC---
T ss_pred HHHHHHHh-CCCCCEEEECCCCcHHHHHH---HHHhcCeEEEEeccccccc-------------CCCHHHHH--HhC---
Confidence 99999999 68899999988777666544 4456999999987653322 22688888 544
Q ss_pred CCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC---CCCCCCC--CCCCCcEEE
Q 010538 196 DPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC---VTQPPDL--SKYPVDFVV 270 (508)
Q Consensus 196 ~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~---g~~~~d~--~~~~~D~~~ 270 (508)
+++++++++++++||||.+++.+++.++++ +|+++|++||+|++++. ...+... ...+..+++
T Consensus 162 ---~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~---------~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~ 229 (382)
T d1b5pa_ 162 ---TPRTKALVVNSPNNPTGAVYPKEVLEALAR---------LAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTV 229 (382)
T ss_dssp ---CTTEEEEEEESSCTTTCCCCCHHHHHHHHH---------HHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEE
T ss_pred ---CCCCeEEEECCCCCCcchhCCHHHHHHHHH---------HHHHcCeEEEEEccccceecCCCCCCHHHcCCCCEEEE
Confidence 578899999999999999999888888777 56679999999999873 1111111 111345888
Q ss_pred EeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHH--HH
Q 010538 271 MSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFN--LI 346 (508)
Q Consensus 271 ~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~--~~ 346 (508)
.|++|.|+.| | +||++++++.++.+..... ....+++......+..++. ..
T Consensus 230 ~s~SK~~~~~-GlR~G~~~~~~~~i~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~ 284 (382)
T d1b5pa_ 230 NGAAKAFAMT-GWRIGYACGPKEVIKAMASVSR------------------------QSTTSPDTIAQWATLEALTNQEA 284 (382)
T ss_dssp EESTTTTTCG-GGCCEEEECCHHHHHHHHHHHH------------------------TTTCSCCHHHHHHHHHHHHCHHH
T ss_pred ecchhhccCc-HhheEEEEECHHHHHHHHHHHH------------------------hcccCcccccccccccccccccc
Confidence 9999999844 7 8999999988766543211 1112223322222222221 11
Q ss_pred HhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCC
Q 010538 347 NSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGI 426 (508)
Q Consensus 347 ~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI 426 (508)
.+..+...++.++..++.+.+.+.+. ++.+..|.+ +.++|+++.... .+...+.+.|.++||
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~l~~~-------g~~~~~p~g--------g~~~~~~~~~~~---~~~~~~~~~l~e~gV 346 (382)
T d1b5pa_ 285 SRAFVEMAREAYRRRRDLLLEGLTAL-------GLKAVRPSG--------AFYVLMDTSPIA---PDEVRAAERLLEAGV 346 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------TCCBCCCSB--------TTEEEEECTTTC---SSHHHHHHHHHHTTE
T ss_pred hhHHHHHHHHHHHhhhhHHHHHHhhc-------CCeEecCCc--------eEEEeEeCCCCC---CCHHHHHHHHHHCCE
Confidence 12224566677777888888888776 566655543 788888886532 244568888999999
Q ss_pred eeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 427 QLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 427 ~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
.+.+|..|.. .+++|++++ .+.|+++..+++|++++
T Consensus 347 ~v~PG~~F~~-----------------------------------~~~iRis~~--~~~e~l~~al~rl~~~L 382 (382)
T d1b5pa_ 347 AVVPGTDFAA-----------------------------------FGHVRLSYA--TSEENLRKALERFARVL 382 (382)
T ss_dssp ECEESGGGTC-----------------------------------TTEEEEECC--SCHHHHHHHHHHGGGGC
T ss_pred EEEeCcccCC-----------------------------------CCeEEEEEc--CCHHHHHHHHHHHHHhC
Confidence 9999875421 578999997 47899999999888764
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=1.8e-26 Score=232.03 Aligned_cols=349 Identities=11% Similarity=-0.040 Sum_probs=236.9
Q ss_pred CCCCCCCCHHHHHHHHHHhhccccCCCCCcc---chhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhh
Q 010538 46 HAGATLYSELQMEAIFRDFTTNVYGNPHSQS---DISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEA 122 (508)
Q Consensus 46 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~ 122 (508)
++|.+.+|++|++++.+.+ .++...+.+.+ ..+..+.++++++|+.+++++|++.+ ++|+|++|++++++.+...
T Consensus 6 ~pGP~~~p~~Vl~a~~~~~-~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~-~~v~~~~gs~t~~~~a~~~ 83 (360)
T d1bjna_ 6 SSGPAMLPAEVLKQAQQEL-RDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSN-YKVLFCHGGGRGQFAAVPL 83 (360)
T ss_dssp CSSSCCCCHHHHHHHHHTS-SSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTT-EEEEEESSHHHHHHHHHHH
T ss_pred CCCCcCCCHHHHHHHHHHH-hhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCC-CEEEEECCchHHHHhhhhh
Confidence 4556667999999986644 34433332221 23456788999999999999999754 4899999998888776665
Q ss_pred cCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCc
Q 010538 123 FPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAY 202 (508)
Q Consensus 123 l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t 202 (508)
....+++.+++.. ++.....|...++..|..+..+........ +.+.++ ....+++
T Consensus 84 ~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~--------~~~~~~~ 139 (360)
T d1bjna_ 84 NILGDKTTADYVD-AGYWAASAIKEAKKYCTPNVFDAKVTVDGL---------------RAVKPM--------REWQLSD 139 (360)
T ss_dssp HHCTTCCEEEEEE-SSHHHHHHHHHHTTTSEEEEEECEEEETTE---------------EEECCG--------GGCCCCS
T ss_pred cccccccccceec-ccchhhhhHHHHhhcCccceeeccccCCCc---------------chhhhh--------hhhccCC
Confidence 5456666666654 444555666777777877777765544433 222333 2235677
Q ss_pred eEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc
Q 010538 203 NLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG 282 (508)
Q Consensus 203 ~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G 282 (508)
+++++++.+|.||+..|++.+. ++ .+++.+++|++++++..++|.. ++|++++|+||+++.|.|
T Consensus 140 ~~v~v~~~~~~t~~~~~~~~i~--~~------------~~~~~v~vDa~~~~~~~~vd~~--~~dv~~~ss~k~~~~~~~ 203 (360)
T d1bjna_ 140 NAAYMHYCPNETIDGIAIDETP--DF------------GADVVVAADFSSTILSRPIDVS--RYGVIYAGAQKNIGPAGL 203 (360)
T ss_dssp SCSCEEECSEETTTTEECCCCC--CC------------CTTCCEEEECTTTTTSSCCCGG--GCSEEEEETTTTTSSTTC
T ss_pred ceeEEEecccccccCcccccee--cc------------cccceeeeeeeccccceeeeec--cceeEEEEcccccccCCC
Confidence 8888899999999999987653 23 3789999999999998888776 489999999998887877
Q ss_pred ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHH
Q 010538 283 LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLG 362 (508)
Q Consensus 283 ~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~ 362 (508)
.|+++.++...+........+.. ..+. ........++......+...++..+...+.+...++..+.+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (360)
T d1bjna_ 204 TIVIVREDLLGKANIACPSILDY-------SILN-----DNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKA 271 (360)
T ss_dssp EEEEEEGGGCSCCCTTSCGGGCH-------HHHH-----HTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred ceeEeeehhhhhccccCCcchhh-------HHHH-----hhhhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 88888877664433222111110 0010 01111223333334444444555555556777888888888
Q ss_pred HHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhh
Q 010538 363 MYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKY 442 (508)
Q Consensus 363 ~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~ 442 (508)
.++...+.... ...+..++. .++..+++|.+++. .+..++.+.|+++||.++.|+.|
T Consensus 272 ~~~~~~~~~~~------~~~~~~~~~-----~rs~~v~~f~~~~~----~~~~~~~~~l~~~Gi~~~~G~~~-------- 328 (360)
T d1bjna_ 272 ELLYGVIDNSD------FYRNDVAKR-----NRSRMNVPFQLADS----ALDKLFLEESFAAGLHALKGHRV-------- 328 (360)
T ss_dssp HHHHHHHHHCS------SEECCBCGG-----GBCSSEEEEEESSG----GGHHHHHHHHHHTTEECCBCCTT--------
T ss_pred HHHHHhhhccc------cccccCCcc-----cccceEEEEEcCCc----ccHHHHHHHHHHCCCEeecCCCc--------
Confidence 88887777662 333333332 34578899999753 34556889999999999887532
Q ss_pred cCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 443 LGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 443 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
-|.+|||+..++|.|||++|+++|++|.+
T Consensus 329 -----------------------------~g~~Ris~~~~~t~edV~~li~~l~e~~~ 357 (360)
T d1bjna_ 329 -----------------------------VGGMRASIYNAMPLEGVKALTDFMVEFER 357 (360)
T ss_dssp -----------------------------TCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred -----------------------------cCeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 23599999999999999999999999764
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.94 E-value=2.2e-26 Score=232.73 Aligned_cols=350 Identities=13% Similarity=0.042 Sum_probs=226.8
Q ss_pred ee-eeCCCCCCCCHHHHHHHHHHhhccccCCCCCccc---hhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHH
Q 010538 42 VY-LDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSD---ISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALK 117 (508)
Q Consensus 42 iy-ld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~ 117 (508)
.| |. +|.+++|+.|++++.+.+. +....+.+... .+..+.++++++|+.++++++++. +|+|+|++|++.+.+
T Consensus 4 ~~~F~-pGP~~vp~~V~eam~~~~~-~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~-~~~i~~~~gs~t~~~ 80 (361)
T d2c0ra1 4 AYNFN-AGPAALPLEVLERAQAEFV-DYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPT-GYKVLFIQGGASTQF 80 (361)
T ss_dssp CEECC-SSSCCCCHHHHHHHHHTSS-SSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCS-SEEEEEESSHHHHHH
T ss_pred CcccC-CCCcCCCHHHHHHHHHHHh-hhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCC-CCEEEEECCCchHHH
Confidence 35 53 5567779999999876543 32222222211 246678999999999999999975 468999888877665
Q ss_pred HHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCC
Q 010538 118 LVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP 197 (508)
Q Consensus 118 ~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~ 197 (508)
.++....+.+++++++.. .+.....|...++..|..+..+..+..... +++.++ +.+.
T Consensus 81 ea~~~~l~~~~~~~l~~~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~--~~~~---- 138 (361)
T d2c0ra1 81 AMIPMNFLKEGQTANYVM-TGSWASKALKEAKLIGDTHVAASSEASNYM---------------TLPKLQ--EIQL---- 138 (361)
T ss_dssp HHHHHHHCCTTCEEEEEE-CSHHHHHHHHHHHHHSCEEEEEECGGGTTC---------------SCCCGG--GCCC----
T ss_pred HHHHhccccCCCceEEEe-echhhhhhhhhhhhcCceeeeecccccccc---------------chhhhh--hhcc----
Confidence 444433366677766554 333455677888888999998887765544 344555 4332
Q ss_pred CCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccc
Q 010538 198 AGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIF 277 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~ 277 (508)
.. . +.+++|.||...|+++|.+++++ +|++++||+++++|+.|+|+.++ |+.++|++|.+
T Consensus 139 --~~-~---~~~v~~~tg~~~~~~~i~~~~~~------------~~al~~vDavss~g~~~id~~~~--di~~~s~~k~~ 198 (361)
T d2c0ra1 139 --QD-N---AAYLHLTSNETIEGAQFKAFPDT------------GSVPLIGDMSSDILSRPFDLNQF--GLVYAGAQKNL 198 (361)
T ss_dssp --CT-T---EEEEEEESEETTTTEECSSCCCC------------TTSCEEEECTTTTTSSCCCGGGC--SEEEEETTTTT
T ss_pred --cC-c---ceEEEEecccceecceEEEeecc------------CCceEEEEeeccccccccccccc--eeEEEeccccc
Confidence 11 2 23556789999999999877776 99999999999999999999985 55566789988
Q ss_pred cCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH-hcChHHHHH
Q 010538 278 GYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN-SLTVPAICR 356 (508)
Q Consensus 278 g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~-~~g~~~i~~ 356 (508)
+.|+|.|+++..+.. ....+...... ....+. .......+++......+..+..+.. ..+.....+
T Consensus 199 ~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (361)
T d2c0ra1 199 GPSGVTVVIVREDLV-AESPKHLPTML------RYDTYV------KNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQ 265 (361)
T ss_dssp CCSSCEEEEEEGGGS-SSCCTTSCGGG------CHHHHH------HTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred ccccCcEEEEEhHHh-hhCcccccccc------cccccc------ccccccccccceeeehhhhHHHhhhhccchHHHHH
Confidence 844444444444443 32222211110 001111 1111223344444444444444333 344556677
Q ss_pred HHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCc
Q 010538 357 HIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNP 436 (508)
Q Consensus 357 ~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~ 436 (508)
+.+..+..+........ ....+..+... ++..+++|.+++. ++..++.+.|+++||.++.|+.|
T Consensus 266 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-----rS~~~~~~~~~~~----~~~~~~~~~L~~~GI~~~~G~~~-- 329 (361)
T d2c0ra1 266 ANRKKASLIYDAIDQSG-----GFYRGCVDVDS-----RSDMNITFRLASE----ELEKEFVKASEQEGFVGLKGHRS-- 329 (361)
T ss_dssp HHHHHHHHHHHHHHTST-----TSSEESSCGGG-----BCSSEEEEECSCH----HHHHHHHHHHHHTTEESCBCCTT--
T ss_pred HHHHHHHHhhhhhhhcc-----cccccCCChhh-----ccceEEEEECCCc----ccHHHHHHHHHHCCCEEecCCCc--
Confidence 77777777777666542 12334443332 3357788888653 44567899999999999998643
Q ss_pred hHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 437 GACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 437 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
-+.+|||+..++|.|||++|+++|++|.+
T Consensus 330 -----------------------------------~g~~RIs~~~~~~~edv~~Lv~~l~~~~~ 358 (361)
T d2c0ra1 330 -----------------------------------VGGLRASIYNAVPYESCEALVQFMEHFKR 358 (361)
T ss_dssp -----------------------------------TCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------CCeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 13499999999999999999999999865
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.93 E-value=1.5e-25 Score=234.45 Aligned_cols=363 Identities=11% Similarity=-0.027 Sum_probs=252.6
Q ss_pred CCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCC-------CceEEEcCCh
Q 010538 40 GTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMK-------DYKCIFTSGA 112 (508)
Q Consensus 40 ~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~-------~~~i~~t~g~ 112 (508)
..-|+.+-..+..++.++..++...+. +....+..++....+...+.+++++++|.+.. +-.-++|+|+
T Consensus 73 ~P~f~~~~~~~~~~~~~l~~~~~~~~n----~n~~~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Gg 148 (476)
T d1js3a_ 73 SPYFFAYFPTASSYPAMLADMLCGAIG----CIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSA 148 (476)
T ss_dssp STTBCSSSCCCCCHHHHHHHHHHHHHC----CCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCH
T ss_pred CCCeeEeCCCCCCHHHHHHHHHHHhhc----ccccchhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcH
Confidence 456888877776677676666554432 22233455666777888899999999998632 1157899999
Q ss_pred HHHHHHHHhhcCCC------------------CCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccc
Q 010538 113 TAALKLVGEAFPWS------------------HQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLV 174 (508)
Q Consensus 113 t~al~~~~~~l~~~------------------~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~ 174 (508)
|+++..++.+...+ +.-+|+++...|+|+.....++ |+.++.||.++++.+
T Consensus 149 s~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si~ka~~~l---Gl~~~~v~~d~~~~m-------- 217 (476)
T d1js3a_ 149 SEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIG---GVKLKAIPSDGKFAM-------- 217 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHH---TCEEEEECCCTTSCC--------
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccccHHHHHHHHhc---CceEEEeccCCCCCc--------
Confidence 99987766443110 1125888999999988776665 889999999988888
Q ss_pred cccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC
Q 010538 175 TSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC 254 (508)
Q Consensus 175 ~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~ 254 (508)
|++.|+ ++|++....+..+.+|+.+.+++.+|.+.|+++|.++|++ +|+|++||++++.
T Consensus 218 -------d~~~L~--~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~i~~~------------~~~wlHVDAA~Gg 276 (476)
T d1js3a_ 218 -------RASALQ--EALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHE------------EDIWLHVDAAYAG 276 (476)
T ss_dssp -------CHHHHH--HHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH------------TTCEEEEECTTGG
T ss_pred -------CHHHHH--HHHHHHHhcCCCcEEEeecCCCccceeeccHHHHHHHHHh------------cCcEEEEecccch
Confidence 688888 6665432334567889999999999999999999999998 9999999999977
Q ss_pred CCCCCCCCC-----C-CCcEEEEeccccccCCCcceEEEEechhHhhhccccc-cCceEEec--cc--chhhhhhccCcc
Q 010538 255 VTQPPDLSK-----Y-PVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYF-SGGTVAAS--IA--DIDFVKRRQGVE 323 (508)
Q Consensus 255 g~~~~d~~~-----~-~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~-g~~~~~~~--~~--~~~~~~~~~~~~ 323 (508)
...+.+-.+ . .+|.++.++|||++.|.++|++++++... +..... +....... .. ..++. .
T Consensus 277 ~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~g~~l~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 348 (476)
T d1js3a_ 277 SAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTD--LTGAFKLDPVYLKHSHQGSGLITDYR------H 348 (476)
T ss_dssp GGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHH--HHGGGC------------CCSCCCGG------G
T ss_pred hhhhhcchhhhhcCCcccceeeecCccccccCCcceeecccchHH--HHHHHhcChhhhcccccccccccccc------c
Confidence 555443221 1 58999999999988899999999987542 111111 11000000 00 00000 1
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEE
Q 010538 324 ELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFN 403 (508)
Q Consensus 324 ~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 403 (508)
...+ ++..+. ...++.+++.+...|++++.++..+++++|.+.|++. ++++++.++. .++|+|+
T Consensus 349 ~~~~-~sr~~~-al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~------~~fel~~~p~--------l~iV~Fr 412 (476)
T d1js3a_ 349 WQLP-LGRRFR-SLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQD------PRFEVCAEVT--------LGLVCFR 412 (476)
T ss_dssp SSSC-SCCCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------TTEEECSCCC--------SSEEEEE
T ss_pred cccc-cchhhH-HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcC------CCeEEECCCc--------eEEEEEE
Confidence 1122 233333 3467888998888999999999999999999999998 4799998865 7899999
Q ss_pred eeCCCCCccCHHHHHHHHhhCCC-eeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecC-C
Q 010538 404 LKRPDGSWFGYREVEKLASLSGI-QLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFG-Y 481 (508)
Q Consensus 404 ~~~~~~~~~~~~~l~~~L~~~gI-~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~-~ 481 (508)
+.+.+. ++ ..+.+.|.+.|- .+.+.. . ....++|+++. +
T Consensus 413 ~~~~d~--~n-~~l~~~l~~~G~~~~s~t~---~---------------------------------~g~~~lR~~i~n~ 453 (476)
T d1js3a_ 413 LKGSDG--LN-EALLERINSARKIHLVPCR---L---------------------------------RGQFVLRFAICSR 453 (476)
T ss_dssp ESSCHH--HH-HHHHHHHHHHTSCBCEEEE---E---------------------------------TTEEEEEEECCCT
T ss_pred ccCChH--HH-HHHHHHHHhcCCEEEeeee---E---------------------------------CCEEEEEEEeCCC
Confidence 865432 21 235566666553 332210 0 01358999987 6
Q ss_pred CCCHHHHHHHHHhhhhhhhh
Q 010538 482 MSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 482 ~~t~eev~~l~~~~~~~~~~ 501 (508)
.+|++||+.+++.|+++.+.
T Consensus 454 ~Tt~~did~~~~~i~~~a~~ 473 (476)
T d1js3a_ 454 KVESGHVRLAWEHIRGLAAE 473 (476)
T ss_dssp TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 68899999999999988654
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.93 E-value=1.4e-24 Score=217.42 Aligned_cols=308 Identities=14% Similarity=0.152 Sum_probs=215.3
Q ss_pred CCCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC---CCCCCceEEEcCChH
Q 010538 38 ENGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN---ASMKDYKCIFTSGAT 113 (508)
Q Consensus 38 ~~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~---~~~~~~~i~~t~g~t 113 (508)
+++.|||+-+-.. ++|+.+++++.+.+..... .++... ...++|+++|++++ ++++ +|++|+|++
T Consensus 18 ~~d~~~l~~~enp~~~p~~i~~~~~~~~~~~~~-----~~yp~~----g~~~Lr~aia~~~~~~~v~~d--~I~it~G~~ 86 (334)
T d2f8ja1 18 KRDKTYLALNENPFPFPEDLVDEVFRRLNSDAL-----RIYYDS----PDEELIEKILSYLDTDFLSKN--NVSVGNGAD 86 (334)
T ss_dssp CCCSEECSSCCCSSCCCHHHHHHHHHHCCTTGG-----GSCCCS----SCHHHHHHHHHHHTCSSCCGG--GEEEEEHHH
T ss_pred CCCceEEECCCCCCCCCHHHHHHHHHHhhcchh-----cCCCCC----CcHHHHHHHHHHhcccCCCcc--eEEecCcch
Confidence 3789999877543 4567777777665432111 111111 13557888888876 4666 899999999
Q ss_pred HHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCC
Q 010538 114 AALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFP 193 (508)
Q Consensus 114 ~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~ 193 (508)
+++.+++..+ ++|++....|+.+....+ ..|++++.||++.+.... +
T Consensus 87 ~~l~~l~~~~-----d~v~i~~P~y~~~~~~~~---~~g~~~v~v~~~~~~~~~-------------------~------ 133 (334)
T d2f8ja1 87 EIIYVMMLMF-----DRSVFFPPTYSCYRIFAK---AVGAKFLEVPLTKDLRIP-------------------E------ 133 (334)
T ss_dssp HHHHHHHHHS-----SEEEECSSCCHHHHHHHH---HHTCCEEECCCCTTSCCC-------------------C------
T ss_pred hHHHHHhhhc-----cccccccccccccccchh---ccCCcccccccccccccc-------------------c------
Confidence 9999887654 788888766665554444 459999999988655441 1
Q ss_pred CCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCC---CCCCCCCcEEE
Q 010538 194 ERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPP---DLSKYPVDFVV 270 (508)
Q Consensus 194 ~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~---d~~~~~~D~~~ 270 (508)
...++++++++++++||||.+++.+++.++++ +++++++|.++....... .....+.-+++
T Consensus 134 ---~~~~~~~~l~l~nP~NPtG~~~s~~~l~~~~~-------------~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~ 197 (334)
T d2f8ja1 134 ---VNVGEGDVVFIPNPNNPTGHVFEREEIERILK-------------TGAFVALDEAYYEFHGESYVDFLKKYENLAVI 197 (334)
T ss_dssp ---CCCCTTEEEEEESSCTTTCCCCCHHHHHHHHT-------------TTCEEEEECTTGGGTCCCCGGGGGTCSSEEEE
T ss_pred ---cccccceEEEecccccccceeecHHHhhcccc-------------ceeEEeecccchhhcccccccccccCceEEEE
Confidence 12357899999999999999999999998877 689999998865422111 11122345889
Q ss_pred EeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHh
Q 010538 271 MSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINS 348 (508)
Q Consensus 271 ~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~ 348 (508)
.|++|.++ .+| +|++++++++++.+...... ...+.....+..+.++..
T Consensus 198 ~S~SK~~~-~~G~R~G~~~~~~~~i~~l~~~~~~--------------------------~~~s~~~~~~a~~~l~~~-- 248 (334)
T d2f8ja1 198 RTFSKAFS-LAAQRVGYVVASEKFIDAYNRVRLP--------------------------FNVSYVSQMFAKVALDHR-- 248 (334)
T ss_dssp EESTTTSS-CTTTCEEEEEECHHHHHHHHHHSCT--------------------------TCSCHHHHHHHHHHHHTH--
T ss_pred ecCccccc-hhhhhhhhcccchHHHHHHHHhhcc--------------------------cccchhhhhhcccccccc--
Confidence 99999988 446 89999999988776543111 122333333333344432
Q ss_pred cChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCee
Q 010538 349 LTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQL 428 (508)
Q Consensus 349 ~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v 428 (508)
..++...+++.+.++++.+.|+++ |+++..+. ++++++.++.. +..++.+.|.++||.|
T Consensus 249 ~~~~~~~~~~~~~r~~l~~~L~~~-------g~~~~~~~---------g~f~~~~~~~~-----~~~~~~~~L~~~GI~v 307 (334)
T d2f8ja1 249 EIFEERTKFIVEERERMKSALREM-------GYRITDSR---------GNFVFVFMEKE-----EKERLLEHLRTKNVAV 307 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------TCEECCCC---------SSEEEEECCHH-----HHHHHHHHHHHTTEEC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHC-------CCeECCCC---------ceEEEEECCCC-----CHHHHHHHHHHCCCEE
Confidence 235677788889999999999987 68876443 67788887653 2345888999999998
Q ss_pred ccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 429 RTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 429 ~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
++. .+++|||++ |.||+++++++|++|
T Consensus 308 r~~----------------------------------------~~~vRis~g---~~ee~~~l~~~l~~f 334 (334)
T d2f8ja1 308 RSF----------------------------------------REGVRITIG---KREENDMILRELEVF 334 (334)
T ss_dssp EEE----------------------------------------TTEEEEECC---CHHHHHHHHHHHHHC
T ss_pred CCC----------------------------------------CCeEEEEcC---CHHHHHHHHHHHhcC
Confidence 652 478999998 889999999998875
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.93 E-value=2.2e-24 Score=220.91 Aligned_cols=361 Identities=11% Similarity=0.018 Sum_probs=229.1
Q ss_pred chHHHHHHhhccCCCCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCC--CC
Q 010538 25 SIDQIRATEFKRLENGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA--SM 101 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~--~~ 101 (508)
.|+.+.. +.+..+++++.|.-+-... +|+.+++++.+.+....+ .|+.+ ..++.+++.+.+++..|. ++
T Consensus 18 k~~~~~~-~~~~~g~~vi~l~~g~pdf~~p~~v~~al~~~~~~~~~-----~Y~~g--~~~Lr~aia~~~~~~~g~~~~~ 89 (394)
T d1c7na_ 18 KWDLMYS-QNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDETVL-----GYTGP--TEEYKKTVKKWMKDRHQWDIQT 89 (394)
T ss_dssp HHHHHHH-HCTTCCTTCCCCCSSSCSSCCCHHHHHHHHHHHHHCCC-----SSBCC--CHHHHHHHHHHHHHHHCCCCCG
T ss_pred HHHHHHH-HhHhcCCCeEEccCCCCCCCCCHHHHHHHHHHHhCCCc-----CCCCC--CHHHHHHHHHHHHHhcCCCCCC
Confidence 4778887 7776556788887665443 467777777654432222 23222 223444444444444454 66
Q ss_pred CCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCcccccccccccccccc
Q 010538 102 KDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISL 181 (508)
Q Consensus 102 ~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~ 181 (508)
+ +|++|+|+++|+.+++.++ ..+|+.|++....++.+.. ..+..|.+.+.++........ .+
T Consensus 90 ~--~I~vt~G~~~al~~~~~~~-~~pgd~vi~~~p~~~~~~~---~~~~~g~~~v~~~~~~~~~~~------------~~ 151 (394)
T d1c7na_ 90 D--WIINTAGVVPAVFNAVREF-TKPGDGVIIITPVYYPFFM---AIKNQERKIIECELLEKDGYY------------TI 151 (394)
T ss_dssp G--GEEEESSHHHHHHHHHHHH-CCTTCEEEECSSCCTHHHH---HHHTTTCEEEECCCEEETTEE------------EC
T ss_pred c--ceEeeccchhhhhhhhccc-cccccccccccCcccchhh---HHhhhhhcccccccccccccc------------cc
Confidence 6 8999999999999999998 6889999988765555544 444568888888765322211 11
Q ss_pred chhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC----C
Q 010538 182 LPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT----Q 257 (508)
Q Consensus 182 d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~----~ 257 (508)
|.+.++ .++ .+++|+++++++++||||.+++.+++.++++ +|++++++||+|+++..-. .
T Consensus 152 d~~~~~--~~~-----~~~~~~~i~l~~P~NPTG~v~s~~~l~~l~~---------~a~~~~~~ii~De~Y~~~~~~~~~ 215 (394)
T d1c7na_ 152 DFQKLE--KLS-----KDKNNKALLFCSPHNPVGRVWKKDELQKIKD---------IVLKSDLMLWSDEIHFDLIMPGYE 215 (394)
T ss_dssp CHHHHH--HHH-----TCTTEEEEEEESSBTTTTBCCCHHHHHHHHH---------HHHHSSCEEEEECTTTTCBCTTCC
T ss_pred hhhhhh--hhh-----ccccceEEEecccccccceeccHHHhhhhhc---------cccccceeEeccccccccccCCcc
Confidence 344454 222 2567999999999999999999998888777 5667999999999986321 1
Q ss_pred CCCCCC-----CCCcEEEEeccccccCCCc--ceEEEEechhH-hhhccccccCceEEecccchhhhhhccCccccccCC
Q 010538 258 PPDLSK-----YPVDFVVMSFYKIFGYPTG--LGALIMRNDAA-KLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDG 329 (508)
Q Consensus 258 ~~d~~~-----~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~-~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 329 (508)
...... ...-+++.|++|.|+ .+| +|++++++..+ +.+..... ....+
T Consensus 216 ~~~~~~~~~~~~~~~i~~~s~SK~~~-~~G~R~g~~~~~~~~i~~~~~~~~~-----------------------~~~~~ 271 (394)
T d1c7na_ 216 HTVFQSIDEQLADKTITFTAPSKTFN-IAGMGMSNIIIKNPDIRERFTKSRD-----------------------ATSGM 271 (394)
T ss_dssp CCCGGGSCHHHHTTEEEEECSHHHHT-CGGGCCEEEECCCHHHHHHHHHHHH-----------------------HTTCC
T ss_pred ccchhhhhcccccceeeccccccccc-ccccccccccccChhhhhhhhhhhh-----------------------hcccc
Confidence 111111 134478889999988 446 78888877654 32222210 01112
Q ss_pred CCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCC
Q 010538 330 TASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDG 409 (508)
Q Consensus 330 t~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 409 (508)
+.+....++......... ...+++.++..+.++.+.+.++... +++++..|.+ +.++++++++..
T Consensus 272 ~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~p~g--------~~~~~~~~~~~~- 336 (394)
T d1c7na_ 272 PFTTLGYKACEICYKECG-KWLDGCIKVIDKNQRIVKDFFEVNH-----PEIKAPLIEG--------TYLQWIDFRALK- 336 (394)
T ss_dssp CCCHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHC-----TTSBCCCCSB--------SSEEEEECGGGC-
T ss_pred ccccccchhhhhhhcchh-hhhcccccccchhhhhhhhhhhccc-----cceeecCCCc--------eeEEEEECCCCC-
Confidence 222222222222222211 2256666777777777777776532 2455444443 678888887532
Q ss_pred CccCHHHHHHHH-hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHH
Q 010538 410 SWFGYREVEKLA-SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDA 488 (508)
Q Consensus 410 ~~~~~~~l~~~L-~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev 488 (508)
.+..++.+.| ++.||.+.+|..|..+ .++++|||++ .+.|++
T Consensus 337 --~~~~~~~~~Ll~~~gV~v~pG~~Fg~~---------------------------------~~~~iRis~~--~~~e~i 379 (394)
T d1c7na_ 337 --MDHKAMEEFMIHKAQIFFDEGYIFGDG---------------------------------GIGFERINLA--APSSVI 379 (394)
T ss_dssp --CCHHHHHHHHHHTTCCCCEEGGGGCGG---------------------------------GTTEEEEECC--SCHHHH
T ss_pred --CCHHHHHHHHHHhCCEEEEcchhhCCC---------------------------------CCCEEEEEEe--CCHHHH
Confidence 3444566554 6779999999766432 2689999997 478899
Q ss_pred HHHHHhhhhhhhhhh
Q 010538 489 KVNRCSSFDFVNFSQ 503 (508)
Q Consensus 489 ~~l~~~~~~~~~~~~ 503 (508)
+..++.|+++++.+|
T Consensus 380 ~eal~rl~~~l~~Lk 394 (394)
T d1c7na_ 380 QESLERLNKALKDLK 394 (394)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999998887764
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.93 E-value=2.1e-25 Score=229.00 Aligned_cols=308 Identities=12% Similarity=0.102 Sum_probs=207.4
Q ss_pred HHHHHHHHHHc----C--CCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEcc
Q 010538 87 RAAREQVLDYF----N--ASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDV 160 (508)
Q Consensus 87 ~~~r~~la~~~----~--~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~ 160 (508)
.++|+.+|+++ | ++++ +|++|+|+++++.+++.++ ..+|+.|+++...|+.+... +...|.++..||.
T Consensus 74 ~~lR~aia~~l~~~~g~~~~~~--~I~it~G~~~al~~~~~~l-~~~gd~v~~~~P~y~~~~~~---~~~~g~~~~~v~~ 147 (403)
T d1wsta1 74 TPLRLALARWMEKRYDIPMSKV--EIMTVAGSQQALDLIGRVF-LNPGDPIVVEAPTYLAAIQA---FKYYDPEFISIPL 147 (403)
T ss_dssp HHHHHHHHHHHHHHHCCCCTTC--EEEEESSHHHHHHHHHHHH-CCTTCEEEEEESCCHHHHHH---HHTTCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCChH--HeeecccchHHHHHHHHHH-hhcCCccccCCCcchhhhHH---HhhccccceeEee
Confidence 44455555553 4 5677 9999999999999999998 67899999988666655544 4556999999998
Q ss_pred CCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCC
Q 010538 161 EEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFS 240 (508)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~ 240 (508)
+..+..... +....+... ...++.+.++++++++||||.+++.+.+.++++ +|+
T Consensus 148 ~~~~~~~~~---------~~~~~~~~~--------~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~---------~a~ 201 (403)
T d1wsta1 148 DDKGMRVDL---------LEEKLEELR--------KQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLE---------LAN 201 (403)
T ss_dssp ETTEECHHH---------HHHHHHHHH--------HTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHH---------HHH
T ss_pred cccCCcccc---------ccccchhhh--------hccccccccccccccCCCCCccCCHHHHHHHHH---------HHH
Confidence 753322100 000111222 123456788899999999999999998887776 566
Q ss_pred CCCeEEEEeccccC----CCCCCCC---CCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEeccc
Q 010538 241 KGRWMVLIDAAKGC----VTQPPDL---SKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIA 311 (508)
Q Consensus 241 ~~g~~vivD~a~~~----g~~~~d~---~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~ 311 (508)
+|+++||+|+++.. +.....+ ...+..+++.|++|+++ | | +||+++++++++.+......
T Consensus 202 ~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~-G~RiG~~i~~~~~i~~~~~~~~~--------- 270 (403)
T d1wsta1 202 EYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKILA-P-GFRIGWVAAHPHLIRKMEIAKQS--------- 270 (403)
T ss_dssp HTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEESTTTTC-G-GGCCEEEEECHHHHHHHHHHHHH---------
T ss_pred hcCceeccccchhheecCCCCCCcccccCCCCcEEEEccccceec-C-cccccccccchHHHHHHHHHHhh---------
Confidence 79999999999863 2222222 23356689999999887 7 5 89999999887655433110
Q ss_pred chhhhhhccCccccccCCCCChhHHHHHHHHHH-HHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCC
Q 010538 312 DIDFVKRRQGVEELFEDGTASFLSIASIRHGFN-LINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSE 390 (508)
Q Consensus 312 ~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~-~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~ 390 (508)
.. ...+.....+..+.+. ...+..+..+.+.+...++.+.+.|.+... .++....|.+
T Consensus 271 --------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~----~~~~~~~p~g-- 329 (403)
T d1wsta1 271 --------------ID-LCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMP----EGVEWTKPEG-- 329 (403)
T ss_dssp --------------HH-SSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----TTCEECCCSB--
T ss_pred --------------hc-cccccchhhhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhcc----CCeEEeCCCc--
Confidence 11 1222222222222222 111223577778888888888888876421 3566666654
Q ss_pred cccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCC
Q 010538 391 VSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGK 470 (508)
Q Consensus 391 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 470 (508)
+.++++++++.. +...+.+.|.++||.+.+|..|.... .
T Consensus 330 ------g~~~~~~~~~~~----~~~~~~~~l~~~gV~v~pg~~f~~~~-------------------------------~ 368 (403)
T d1wsta1 330 ------GMFVRVTLPEGI----DTKLMMERAVAKGVAYVPGEAFFVHR-------------------------------D 368 (403)
T ss_dssp ------SSEEEEECCTTC----CTTTTHHHHHHTTEECEEGGGGSTTC-------------------------------C
T ss_pred ------eeEEEEECCCCC----CHHHHHHHHHHCCEEEEechhhcCCC-------------------------------C
Confidence 789999998642 22237888999999999987554321 1
Q ss_pred CCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 471 PTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 471 ~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
.++++||+++. .++++++..++.|+++++
T Consensus 369 ~~~~iRi~~~~-~~~~~l~~al~rl~~~l~ 397 (403)
T d1wsta1 369 KKNTMRLNFTY-VPEETIREGVRRLAETIK 397 (403)
T ss_dssp CCSEEEEECSS-SCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEecC-CCHHHHHHHHHHHHHHHH
Confidence 36899999975 579999999999998876
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=2.1e-24 Score=221.42 Aligned_cols=343 Identities=12% Similarity=0.051 Sum_probs=245.7
Q ss_pred CCCeeeeCCCC---CCC-CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHH
Q 010538 39 NGTVYLDHAGA---TLY-SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATA 114 (508)
Q Consensus 39 ~~~iyld~~~~---~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~ 114 (508)
++.-|+|.+++ +.- +|.+++++.+... .+...+. ..+......+..+++++.+|+++|.+ .+++++++++
T Consensus 43 dG~~~l~f~s~dYLGl~~hp~v~~a~~~a~~-~~g~~~~-~sr~~~g~~~~~~~lE~~lA~~~g~e----~al~~~SG~~ 116 (401)
T d1fc4a_ 43 DGSHVINFCANNYLGLANHPDLIAAAKAGMD-SHGFGMA-SVRFICGTQDSHKELEQKLAAFLGME----DAILYSSCFD 116 (401)
T ss_dssp TSCEEEECCCSCTTSCTTCHHHHHHHHHHHH-HHCSCCC-SCHHHHCCBHHHHHHHHHHHHHHTCS----EEEEESCHHH
T ss_pred CCCEEEEEEccccccccCCHHHHHHHHHHHH-HhCCCcc-cceeeccCcHHHHHHHHHHHHhhcCC----ceEEecchhh
Confidence 45668887763 222 8889888766543 2222222 22223335677889999999999986 4688899999
Q ss_pred HHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCC
Q 010538 115 ALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 115 al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
|+..++.++ ..+++.|++....|.++..... ..+.++..++..+...+ +.+. ..+
T Consensus 117 An~~~i~~l-~~~~d~i~~d~~~h~s~~~G~~---~~~a~~~~~~~~d~~~l-----------------e~~~--~~~-- 171 (401)
T d1fc4a_ 117 ANGGLFETL-LGAEDAIISDALNHASIIDGVR---LCKAKRYRYANNDMQEL-----------------EARL--KEA-- 171 (401)
T ss_dssp HHHTTHHHH-CCTTCEEEEETTCCHHHHHHHH---TSCSEEEEECTTCHHHH-----------------HHHH--HHH--
T ss_pred hhHHHHHHh-cCCCcEEEeCCcchHHHHcccc---ccCceEEEEcCCChHHH-----------------HHHH--HHh--
Confidence 999999998 5788999999999998876544 34778777765432222 2222 111
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCC--------CCCC
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLS--------KYPV 266 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~--------~~~~ 266 (508)
....+.+.+|++..+.++.|.+.|++++.++|++ +|+++++|++|++|.....-. ..++
T Consensus 172 -~~~~~~~~liv~egv~s~~G~~~~L~~l~~L~~~------------~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~ 238 (401)
T d1fc4a_ 172 -REAGARHVLIATDGVFSMDGVIANLKGVCDLADK------------YDALVMVDDSHAVGFVGENGRGSHEYCDVMGRV 238 (401)
T ss_dssp -HHTTCSSEEEEEESEETTTTEECCHHHHHHHHHH------------TTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCC
T ss_pred -hhcccCceEEEEcCCCCCCCchhhhhHHHHHHhh------------cCcEEEehhhhccccccCCCCccchhccCCCCC
Confidence 1124566899999999999999999999999998 999999999999876544211 2258
Q ss_pred cEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHH
Q 010538 267 DFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLI 346 (508)
Q Consensus 267 D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~ 346 (508)
|++++|++|.+|++.| |++..+++.++.++..-. .......++.+...+...+++.+
T Consensus 239 dii~~tl~Ka~gg~~G-g~v~g~~~~~~~l~~~~~----------------------~~~~s~~l~p~~~~aa~~~l~~~ 295 (401)
T d1fc4a_ 239 DIITGTLGKALGGASG-GYTAARKEVVEWLRQRSR----------------------PYLFSNSLAPAIVAASIKVLEMV 295 (401)
T ss_dssp SEEEEESSSTTCSSSC-EEEEECHHHHHHHHHHCH----------------------HHHHSCCCCHHHHHHHHHHHHHH
T ss_pred eEEEeecccccccCCc-ccccCCHHHHHHHHcCCh----------------------hhhhcCCCCHHHHHHHHhhhccc
Confidence 9999999999875755 888888888776543310 01122344555666666777776
Q ss_pred HhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCC
Q 010538 347 NSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGI 426 (508)
Q Consensus 347 ~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI 426 (508)
.+ .+++++++.++.+++++.+... ++.+.... ++++.+.+.+.. ....+.+.|.++||
T Consensus 296 ~~--~~~~~~~l~~~~~~~~~~l~~~-------g~~~~~~~---------~pIv~v~~~~~~----~a~~~~~~L~~~Gi 353 (401)
T d1fc4a_ 296 EA--GSELRDRLWANARQFREQMSAA-------GFTLAGAD---------HAIIPVMLGDAV----VAQKFARELQKEGI 353 (401)
T ss_dssp HT--CHHHHHHHHHHHHHHHHHHHHT-------TCCBCCSS---------SSEEEEEEECHH----HHHHHHHHHHHTTE
T ss_pred cc--CHHHHHHHHHHHHHHHhhhccc-------CCccCCCC---------CCEEEEEECCHH----HHHHHHHHHHHCCc
Confidence 55 4788999999999999999887 45444322 688888776532 12358889999999
Q ss_pred eeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 427 QLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 427 ~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
.+.+...++.+. ....+|++++..+|.||||++++++++..+.+
T Consensus 354 ~v~~i~~PtVp~--------------------------------g~~~lRi~~~a~hT~edId~~v~al~ev~~~l 397 (401)
T d1fc4a_ 354 YVTGFFYPVVPK--------------------------------GQARIRTQMSAAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp ECCEECTTSSCT--------------------------------TCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred eEEeECCCCCCC--------------------------------CCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 988754444332 25679999999999999999999999987654
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.93 E-value=7e-24 Score=213.87 Aligned_cols=325 Identities=12% Similarity=0.061 Sum_probs=215.6
Q ss_pred CCCeeeeCCC-CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHH
Q 010538 39 NGTVYLDHAG-ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALK 117 (508)
Q Consensus 39 ~~~iyld~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~ 117 (508)
+++|-|..+. .-++|+.+.+++.+.. ......|... ..++|+.+|+++|++++ +|++|+|+++++.
T Consensus 22 ~~~idls~~~np~~~p~~~~~a~~~~~-~~~~~Yp~~~----------~~~Lr~aia~~~~v~~~--~I~~~~g~~~~~~ 88 (355)
T d1lc5a_ 22 DQLLDFSANINPLGMPVSVKRALIDNL-DCIERYPDAD----------YFHLHQALARHHQVPAS--WILAGNGETESIF 88 (355)
T ss_dssp GGSEECSSCCCTTCCCHHHHHHHHHTG-GGGGSCCCTT----------CHHHHHHHHHHHTSCGG--GEEEESSHHHHHH
T ss_pred hheEEccCCCCCCCCCHHHHHHHHHHH-HHhccCCCCC----------hHHHHHHHHHHhCCCHH--HEEecccHHHHHH
Confidence 4677776542 2235777777765533 2222222211 24579999999999998 8999999999999
Q ss_pred HHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCC
Q 010538 118 LVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP 197 (508)
Q Consensus 118 ~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~ 197 (508)
++..++ .+++.++.. ..++.+. ......+.+++.+|++.+.... ..+.+. + .
T Consensus 89 ~~~~~~--~~~~~~v~~-p~~~~~~---~~~~~~~~~~~~v~~~~~~~~~--------------~~~~~~--~------~ 140 (355)
T d1lc5a_ 89 TVASGL--KPRRAMIVT-PGFAEYG---RALAQSGCEIRRWSLREADGWQ--------------LTDAIL--E------A 140 (355)
T ss_dssp HHHHHH--CCSEEEEEE-SCCTHHH---HHHHHTTCEEEEEECCGGGTTC--------------CCTTHH--H------H
T ss_pred HHHhhh--ccccccccC-Cccceec---cccccccccceeeeeeccCCcc--------------ceeeee--e------c
Confidence 888776 334444433 3343333 3334468899999987533221 012233 1 2
Q ss_pred CCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC-CCCC----CCCCCCcEEEEe
Q 010538 198 AGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT-QPPD----LSKYPVDFVVMS 272 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~-~~~d----~~~~~~D~~~~S 272 (508)
..+++++|++++++||||.+++.+++.++++ +|+++++++++|.++.... .+.. ....+..+++.|
T Consensus 141 ~~~~~~~v~l~nP~NPtG~~~~~e~l~~i~~---------~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~i~~~S 211 (355)
T d1lc5a_ 141 LTPDLDCLFLCTPNNPTGLLPERPLLQAIAD---------RCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRS 211 (355)
T ss_dssp CCTTCCEEEEESSCTTTCCCCCHHHHHHHHH---------HHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEE
T ss_pred cccccceeeeecccCcccccchhhhhhhhhh---------hccccccccccccceeeeeeecccccccccccccceeecc
Confidence 3578899999999999999999888877776 4566999999999986311 1111 122234589999
Q ss_pred ccccccCCCc--ceEEEEechhHh-hhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhc
Q 010538 273 FYKIFGYPTG--LGALIMRNDAAK-LLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSL 349 (508)
Q Consensus 273 ~~K~~g~P~G--~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~ 349 (508)
++|+|| .+| +||++++++.+. .++... ...+.+..+..+..++++.. .
T Consensus 212 ~SK~~~-l~GlR~G~~i~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~a~~~l~~~--~ 262 (355)
T d1lc5a_ 212 LTKFYA-IPGLRLGYLVNSDDAAMARMRRQQ--------------------------MPWSVNALAALAGEVALQDS--A 262 (355)
T ss_dssp STTTTT-CTTTCCEEEECCCHHHHHHHHHHS--------------------------CTTCSCHHHHHHHHHGGGCH--H
T ss_pred cccccc-cccccccceeccchhhhHHHHhhc--------------------------CCcccccccccccccccccc--c
Confidence 999998 447 899999876542 222110 11233334444444444421 2
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeec
Q 010538 350 TVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLR 429 (508)
Q Consensus 350 g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~ 429 (508)
.+...++++++.++++.+.|.++. ++++. |.. +++++++++. +..+ +.+.|.++||.|+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~-p~~--------~~f~~~~~~~-~~~~-----~~~~L~~~gv~vr 321 (355)
T d1lc5a_ 263 WQQATWHWLREEGARFYQALCQLP------LLTVY-PGR--------ANYLLLRCER-EDID-----LQRRLLTQRILIR 321 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTST------TEEEC-CCS--------SSEEEEEESC-TTCC-----HHHHHHTTTEECE
T ss_pred hhHHHHHHHHHHHHHHHHHHhhcC------CcEEC-CCC--------CEEEEEECCC-CHHH-----HHHHHHHCCcEEE
Confidence 256677888889999999999883 67764 333 6889998875 3333 7888889999999
Q ss_pred cCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 430 TGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 430 ~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
+|..+.. ...+++|||++ +.+|+++++++|++++
T Consensus 322 ~~~~f~~---------------------------------~~~~~iRis~~---~~~e~~~li~aL~~il 355 (355)
T d1lc5a_ 322 SCANYPG---------------------------------LDSRYYRVAIR---SAAQNERLLAALRNVL 355 (355)
T ss_dssp ECTTSTT---------------------------------CCTTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred eCccCCC---------------------------------CCCCEEEEEeC---CHHHHHHHHHHHHHhC
Confidence 8764422 12689999997 8999999999999874
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=2.9e-24 Score=219.08 Aligned_cols=336 Identities=14% Similarity=0.093 Sum_probs=244.0
Q ss_pred CCCeeeeCCCCC---C-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHH
Q 010538 39 NGTVYLDHAGAT---L-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATA 114 (508)
Q Consensus 39 ~~~iyld~~~~~---~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~ 114 (508)
++.-|+|.+++. . -+|.++++..+....-..+...+. ......+...++++.+|+++|.+ ..++.++++.
T Consensus 36 ~g~~~l~f~s~dYLGl~~~p~v~~a~~~a~~~~G~~~~~sr--~~~g~~~~~~~lE~~LA~~~g~e----~al~~~SG~~ 109 (383)
T d1bs0a_ 36 DDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSG--HVSGYSVVHQALEEELAEWLGYS----RALLFISGFA 109 (383)
T ss_dssp TTEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBT--TTTCCCHHHHHHHHHHHHHHTCS----EEEEESCHHH
T ss_pred CCeEEEEEEcccccccCCCHHHHHHHHHHHHHhCCCCCccc--cccCcchHHHHHHHHHHHhcCCC----ceEEecccch
Confidence 455677776642 1 278888887775543111222222 22234677889999999999986 3577788888
Q ss_pred HHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCC
Q 010538 115 ALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 115 al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
|+..++.++ ..+++.|++....|.++....+ ..+.+++.++.++ +++++ ..+.
T Consensus 110 an~~~i~al-~~~~d~v~~d~~~h~si~~g~~---~~~~~~~~~~hnd--------------------~~~le--~~l~- 162 (383)
T d1bs0a_ 110 ANQAVIAAM-MAKEDRIAADRLSHASLLEAAS---LSPSQLRRFAHND--------------------VTHLA--RLLA- 162 (383)
T ss_dssp HHHHHHHHH-CCTTCEEEEETTCCHHHHHHHH---TSSSEEEEECTTC--------------------HHHHH--HHHH-
T ss_pred hhHHHHHhh-cCCCceEEeeccccHHHhhccc---cCCCcceEecchH--------------------HHHHH--HHhc-
Confidence 999999999 6788999999999988876644 4578888777653 33333 2221
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCC------CCCCcE
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLS------KYPVDF 268 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~------~~~~D~ 268 (508)
...++..+|++..+.+++|.+.|+++|.++|++ +|++++||++|++|....+-. ....|+
T Consensus 163 --~~~~~~~~vv~e~v~s~~G~i~pl~~l~~l~~~------------~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~ 228 (383)
T d1bs0a_ 163 --SPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQ------------HNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPEL 228 (383)
T ss_dssp --SCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHH------------TTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSE
T ss_pred --ccCCCceEEEecCCCCCCCcccchhHHHHHHHh------------cCcEEEeecceeeeecCCcccchHHHcCCcccc
Confidence 124567899999999999999999999999998 999999999999987655432 235678
Q ss_pred EEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHh
Q 010538 269 VVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINS 348 (508)
Q Consensus 269 ~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~ 348 (508)
++.++.|.+|++ | |++..+.+.++.++..- .........+.+..+++.++++.+..
T Consensus 229 ~~~t~~ka~g~~-G-g~v~~~~~~~~~l~~~~----------------------~~~~~s~~~~p~~~aa~~~a~~~~~~ 284 (383)
T d1bs0a_ 229 LVVTFGKGFGVS-G-AAVLCSSTVADYLLQFA----------------------RHLIYSTSMPPAQAQALRASLAVIRS 284 (383)
T ss_dssp EEEESSSTTSSC-C-EEEEECHHHHHHHHHHC----------------------HHHHSSBCCCHHHHHHHHHHHHHHHS
T ss_pred cccccccccccc-c-cccccchhHHHHHHhhc----------------------hhhhhcccccchHHHHHHHHHHHHHh
Confidence 899999999944 4 78888887776665331 01112234455666777788888777
Q ss_pred cChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCee
Q 010538 349 LTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQL 428 (508)
Q Consensus 349 ~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v 428 (508)
...+.+++++.++..++++.|.++ ++.+.... ++|+.+.+.+.. ....+.+.|.++||.+
T Consensus 285 ~~~~~~~~~l~~~~~~~~~~l~~~-------g~~~~~~~---------s~Ii~v~~g~~~----~a~~~~~~L~~~Gi~v 344 (383)
T d1bs0a_ 285 DEGDARREKLAALITRFRAGVQDL-------PFTLADSC---------SAIQPLIVGDNS----RALQLAEKLRQQGCWV 344 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS-------SCEECSCC---------SSBCCEEEESHH----HHHHHHHHHHHTTEEC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhc-------CCccCCCC---------CCEEEEEECCHH----HHHHHHHHHHHCCceE
Confidence 666788899999999999999987 56654332 677777776532 1235789999999999
Q ss_pred ccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhh
Q 010538 429 RTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFD 497 (508)
Q Consensus 429 ~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~ 497 (508)
.+...++.+. ....+|++++.++|+||||+++++|..
T Consensus 345 ~~~~~PtVp~--------------------------------g~~~lRi~~~a~ht~edid~l~~~L~~ 381 (383)
T d1bs0a_ 345 TAIRPPTVPA--------------------------------GTARLRLTLTAAHEMQDIDRLLEVLHG 381 (383)
T ss_dssp CEECTTSSCT--------------------------------TCEEECCBCCTTCCHHHHHHHHHHHHH
T ss_pred EEEcCCCCCC--------------------------------CCceEEEEeCCCCCHHHHHHHHHHHHh
Confidence 8866555443 256799999999999999999999875
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.93 E-value=2.1e-24 Score=219.22 Aligned_cols=335 Identities=12% Similarity=0.100 Sum_probs=229.9
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCC--CCCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA--SMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~--~~~~~~i~~t~g~t~a 115 (508)
+++|.|..+.... +|+.+.+++.+...... ..|.......++.+++.+.+.+..+. +++ +|++|+|+++|
T Consensus 28 ~~vI~l~~G~p~~~~p~~i~~~~~~~~~~~~-----~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~--~i~~t~G~~~a 100 (375)
T d1o4sa_ 28 EDVINLTAGEPDFPTPEPVVEEAVRFLQKGE-----VKYTDPRGIYELREGIAKRIGERYKKDISPD--QVVVTNGAKQA 100 (375)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHTTCC-----CCCCCTTCCHHHHHHHHHHHHHHHTCCCCGG--GEEEESHHHHH
T ss_pred CCeEECCCcCCCCCCCHHHHHHHHHHHhcCC-----cCCCCCcCCHHHHHHHHhhhhhccccccccc--cccccCcHHHH
Confidence 5688998776543 45666666655432211 12332222344455555555555554 555 89999999999
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPER 195 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~ 195 (508)
+.+++.++ ..+|+.|+++...++.+.... ...|..+..++.+..... .++.+.++
T Consensus 101 l~~~~~~l-~~~gd~vlv~~P~y~~~~~~~---~~~~~~~~~~~~~~~~~~-------------~~~~~~~~-------- 155 (375)
T d1o4sa_ 101 LFNAFMAL-LDPGDEVIVFSPVWVSYIPQI---ILAGGTVNVVETFMSKNF-------------QPSLEEVE-------- 155 (375)
T ss_dssp HHHHHHHH-CCTTCEEEEEESCCTTHHHHH---HHTTCEEEEEECCGGGTT-------------CCCHHHHH--------
T ss_pred HHHHHHHH-hCCCCEEEEccCccccchhhh---hccccccccccccccccc-------------cchhHHHH--------
Confidence 99999999 678999999987777665443 345888888877654332 12466666
Q ss_pred CCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCC---CC----CCCCCCcE
Q 010538 196 DPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQP---PD----LSKYPVDF 268 (508)
Q Consensus 196 ~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~---~d----~~~~~~D~ 268 (508)
....++++++++++++||||.+++.+++.++++ +|++|+++|+.|+++...... .. ....+.-+
T Consensus 156 ~~~~~~~~~~~l~nP~NPTG~~~s~~~~~~i~~---------~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i 226 (375)
T d1o4sa_ 156 GLLVGKTKAVLINSPNNPTGVVYRREFLEGLVR---------LAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIV 226 (375)
T ss_dssp HTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH---------HHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEE
T ss_pred HhhccCccEEEEeCCCCCccCCCCHHHHHHHHH---------hHHHcCCceehHhhhccccccccccccccccCCCCCEE
Confidence 233578899999999999999999998888877 667799999999988753221 11 12224568
Q ss_pred EEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHH
Q 010538 269 VVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLI 346 (508)
Q Consensus 269 ~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~ 346 (508)
++.|++|.|+ .+| +||++.+++.++.+...... .....+.. ....+...+
T Consensus 227 ~~~S~SK~~~-l~G~R~G~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~---~~~~~~~~~ 278 (375)
T d1o4sa_ 227 YINGFSKSHS-MTGWRVGYLISSEKVATAVSKIQSH------------------------TTSCINTV---AQYAALKAL 278 (375)
T ss_dssp EEEESTTTTT-CGGGCCEEEECCHHHHHHHHHHHHH------------------------HTCSCCHH---HHHHHHHHT
T ss_pred EEeechhhcc-CCccccccccccccchhhhhhhhcc------------------------cccccccc---chhhhhhhc
Confidence 9999999998 447 89999999887655432111 01111111 222233333
Q ss_pred HhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCC
Q 010538 347 NSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGI 426 (508)
Q Consensus 347 ~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI 426 (508)
+.......+.+.+.++.+.+.|++. ++++..|.+ +.++|+++++. +...+.++|+++||
T Consensus 279 -~~~~~~~~~~~~~r~~~~~~~l~~~-------g~~~~~p~g--------g~f~~~~~~~~-----~~~~~~~ll~~~gV 337 (375)
T d1o4sa_ 279 -EVDNSYMVQTFKERKNFVVERLKKM-------GVKFVEPEG--------AFYLFFKVRGD-----DVKFCERLLEEKKV 337 (375)
T ss_dssp -TCCCHHHHHHHHHHHHHHHHHHHHT-------TCCCCCCSB--------SSEEEEECSSC-----HHHHHHHHHHHHCE
T ss_pred -ccchhhhHHHHHHHHHHHHHHHHhc-------CceEecCCc--------cEEEEEECCCC-----HHHHHHHHHHhCCE
Confidence 3346777888899999999999886 677765543 78899998753 22346677888999
Q ss_pred eeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 427 QLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 427 ~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
.+++|..|.. ++++|||++ +++|+++..++.|+++++
T Consensus 338 ~v~pG~~F~~-----------------------------------~g~iRis~~--~~~e~l~~al~rl~~~l~ 374 (375)
T d1o4sa_ 338 ALVPGSAFLK-----------------------------------PGFVRLSFA--TSIERLTEALDRIEDFLN 374 (375)
T ss_dssp ECEEGGGGTC-----------------------------------TTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred EEEEccccCC-----------------------------------CCeEEEEEc--CCHHHHHHHHHHHHHHhc
Confidence 9999875421 579999997 588999999999988875
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=2.9e-24 Score=217.09 Aligned_cols=338 Identities=9% Similarity=0.012 Sum_probs=214.2
Q ss_pred CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCC--CCCCceEEEcCChHHHHHHHHhhcCCCCC
Q 010538 51 LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA--SMKDYKCIFTSGATAALKLVGEAFPWSHQ 128 (508)
Q Consensus 51 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~--~~~~~~i~~t~g~t~al~~~~~~l~~~~g 128 (508)
++|+.+.+++.+......+ .|..... .++.+++.+.+++.+|. +++ +|++|+|+++++..++.++ ..+|
T Consensus 12 ~~p~~i~eal~~~~~~~~~-----~Y~~~~g-~~lr~~ia~~~~~~~g~~~~~~--~i~it~G~~~~l~~~~~~l-~~~g 82 (361)
T d1d2fa_ 12 ATAPCIIEALNQRLMHGVF-----GYSRWKN-DEFLAAIAHWFSTQHYTAIDSQ--TVVYGPSVIYMVSELIRQW-SETG 82 (361)
T ss_dssp CCCHHHHHHHHHHHTTCCC-----CCCCSCC-HHHHHHHHHHHHHHSCCCCCGG--GEEEESCHHHHHHHHHHHS-SCTT
T ss_pred CCCHHHHHHHHHHHhCCCC-----CCCCCCC-HHHHHHHHHHHHHHhCCCCCcc--eEEEeCCHHHHHHHHhhhc-cccc
Confidence 3466677776554422211 2222111 23455555666666565 566 8999999999999999999 6889
Q ss_pred CeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEe
Q 010538 129 SSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFP 208 (508)
Q Consensus 129 ~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~ 208 (508)
++|+++...|+++... ++..|.+++.++.+...... .+|++.++ +.+. ++++++++++
T Consensus 83 d~Vlv~~P~y~~~~~~---~~~~g~~~~~v~~~~~~~~~------------~~d~~~~~--~~~~-----~~~~~~i~l~ 140 (361)
T d1d2fa_ 83 EGVVIHTPAYDAFYKA---IEGNQRTVMPVALEKQADGW------------FCDMGKLE--AVLA-----KPECKIMLLC 140 (361)
T ss_dssp CEEEEEESCCHHHHHH---HHHTTCEEEEEECEECSSSE------------ECCHHHHH--HHHT-----STTEEEEEEE
T ss_pred cccccccccccchhHH---HHhhcceEEeeccccccccc------------ccccccch--hhcc-----cCCceeEEec
Confidence 9999998777766544 44468898888875422111 11566666 4442 4688999999
Q ss_pred CCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCC----CCCCCCCCC--CCcEEEEeccccccCCCc
Q 010538 209 SECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCV----TQPPDLSKY--PVDFVVMSFYKIFGYPTG 282 (508)
Q Consensus 209 ~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g----~~~~d~~~~--~~D~~~~S~~K~~g~P~G 282 (508)
+++||||.+++.+++.++++ +|+++|+++|+|++++.- ..+..+... +..+++.|++|.++ .+|
T Consensus 141 ~p~NPTG~~~s~~~~~~i~~---------~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~-~~g 210 (361)
T d1d2fa_ 141 SPQNPTGKVWTCDELEIMAD---------LCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFN-IPA 210 (361)
T ss_dssp SSCTTTCCCCCTTHHHHHHH---------HHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHT-CGG
T ss_pred ccccccccccchhhhhhhhh---------hhhhhheeeeecccccccccccccccccccccccccccccccccccc-ccc
Confidence 99999999999776666665 455599999999998742 222222222 23478889999777 335
Q ss_pred --ceEEEEechhH-hhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHH
Q 010538 283 --LGALIMRNDAA-KLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIA 359 (508)
Q Consensus 283 --~G~l~~~~~~~-~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~ 359 (508)
+|++++..... ......+. .....++++...+.+...+.+.... ..+..+....
T Consensus 211 ~R~g~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~ 267 (361)
T d1d2fa_ 211 LTGAYGIIENSSSRDAYLSALK----------------------GRDGLSSPSVLALTAHIAAYQQGAP-WLDALRIYLK 267 (361)
T ss_dssp GCCEEEEECSHHHHHHHHHHHH----------------------TTSCCCSCCHHHHHHHHHHHHHCHH-HHHHHHHHHH
T ss_pred ccceeeecchhHHHHHHhhhcc----------------------cccccccchhhhHHHHHHHhhccch-hhhcccccch
Confidence 78888765432 11111110 0111233444444444334443222 2456666677
Q ss_pred HHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHH-HhhCCCeeccCCCCCchH
Q 010538 360 SLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKL-ASLSGIQLRTGCFCNPGA 438 (508)
Q Consensus 360 ~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~-L~~~gI~v~~g~~~~~~~ 438 (508)
+.++.+.+.+.+.. +++.+..|.+ +.++++++.... .+..++.+. |+++||.+.+|..|...
T Consensus 268 ~r~~~~~~~~~~~~-----~~~~~~~p~g--------g~~~~~~l~~~~---~~~~~~~~~Ll~~~gv~v~pG~~F~~~- 330 (361)
T d1d2fa_ 268 DNLTYIADKMNAAF-----PELNWQIPQS--------TYLAWLDLRPLN---IDDNALQKALIEQEKVAIMPGYTYGEE- 330 (361)
T ss_dssp HHHHHHHHHHHHHC-----SSCCCCCCSB--------CSEEEEECGGGC---CCHHHHHHHHHHTTCEECEEGGGGCGG-
T ss_pred hhHHHHHHHhhhhc-----ccccccccCc--------eeEEEEEccCCC---CCHHHHHHHHHHhCCEEEEeccccCCC-
Confidence 77777777765542 2455554433 678888875321 334456665 46779999998765432
Q ss_pred HHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhh
Q 010538 439 CAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 439 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~ 503 (508)
..+++|+|++ .+++++++.++.|++.++-++
T Consensus 331 --------------------------------~~~~vRis~~--~~~e~l~~al~rl~~~l~~lr 361 (361)
T d1d2fa_ 331 --------------------------------GRGFVRLNAG--CPRSKLEKGVAGLINAIRAVR 361 (361)
T ss_dssp --------------------------------GTTEEEEECC--SCHHHHHHHHHHHHHHHHHHC
T ss_pred --------------------------------CCCEEEEEEc--CCHHHHHHHHHHHHHHHHhcC
Confidence 2578999986 478999999999888887654
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=6.8e-24 Score=214.00 Aligned_cols=285 Identities=15% Similarity=0.101 Sum_probs=199.5
Q ss_pred HHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCC-eEEEecccccchHHHHHHHHhcCCeEEEEccCCccC
Q 010538 87 RAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQS-SYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVD 165 (508)
Q Consensus 87 ~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~-~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~ 165 (508)
.++|+++|+++|++++ +|++|+|+++++.+++.++ ..+|+ +|+++...|+.+.... +..|.+++.++.+++..
T Consensus 59 ~~Lr~~ia~~~gv~pe--~I~it~Gs~eai~~~~~~~-~~pgd~~Vl~~~P~y~~~~~~~---~~~g~~v~~~~~~~~~~ 132 (354)
T d1fg7a_ 59 KAVIENYAQYAGVKPE--QVLVSRGADEGIELLIRAF-CEPGKDAILYCPPTYGMYSVSA---ETIGVECRTVPTLDNWQ 132 (354)
T ss_dssp HHHHHHHHHHHTSCGG--GEEEESHHHHHHHHHHHHH-CCTTTCEEEECSSSCTHHHHHH---HHHTCEEEECCCCTTSC
T ss_pred HHHHHHHHHHhCCChH--HeeeccCchHHHHHHHHHh-hccccccccccccccccchhhh---hccCceeeccccccccc
Confidence 4679999999999999 9999999999999999999 56776 6887776666555444 44599999998876555
Q ss_pred ccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeE
Q 010538 166 NDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWM 245 (508)
Q Consensus 166 ~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~ 245 (508)
+ |++.++ ..+ +++++|++++++||||.+++.+++..++. .++ ++.+
T Consensus 133 ~---------------d~~~l~--~~~-------~~~~~v~~~~pnNPtG~~~~~~~~~~~~~---------~~~-~~~~ 178 (354)
T d1fg7a_ 133 L---------------DLQGIS--DKL-------DGVKVVYVCSPNNPTGQLINPQDFRTLLE---------LTR-GKAI 178 (354)
T ss_dssp C---------------CHHHHH--TSC-------TTEEEEEEESSCTTTCCCCCHHHHHHHHH---------HHT-TTCE
T ss_pred c---------------chhhhh--hcc-------cccceeeccCCCccceeEeeecccccccc---------ccc-cccc
Confidence 5 678888 433 46899999999999999999887777665 233 4666
Q ss_pred EEEeccccCC----CCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhc
Q 010538 246 VLIDAAKGCV----TQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRR 319 (508)
Q Consensus 246 vivD~a~~~g----~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~ 319 (508)
+++|.++..- ..+.........+++.|++|.|| .+| +||++++++.++.+......
T Consensus 179 ~iidd~~~~f~~~~~~~~~~~~~~~~iv~~S~SK~~~-laGlRiGy~i~~~~~i~~l~~~~~~----------------- 240 (354)
T d1fg7a_ 179 VVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFA-LAGLRCGFTLANEEVINLLMKVIAP----------------- 240 (354)
T ss_dssp EEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTC-CGGGCCEEEEECHHHHHHHHHHSCS-----------------
T ss_pred ccccccchhhccccccchhhcccccceEEeCCccccC-CCccccccccccchhhhhhhhhcCc-----------------
Confidence 6666665421 11111222344577899999999 557 89999999988766543211
Q ss_pred cCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCce
Q 010538 320 QGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSM 399 (508)
Q Consensus 320 ~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (508)
...+.+....+.+++..-.........+++.+.++++.+.+.+++ ++..+.|+. +++
T Consensus 241 ---------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~------~~~~~~p~~--------~~f 297 (354)
T d1fg7a_ 241 ---------YPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIP------CVEQVFDSE--------TNY 297 (354)
T ss_dssp ---------SCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHST------TEEEECCCS--------SSE
T ss_pred ---------cchhhHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHhCC------CcceeCCCC--------ceE
Confidence 112222222222222111111134455667888899999998883 565554544 789
Q ss_pred EEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEec
Q 010538 400 VSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSF 479 (508)
Q Consensus 400 v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~ 479 (508)
+++++++ ..++.+.|.++||.|+++..+.. .++++|||+
T Consensus 298 ~~~~~~~-------~~~~~~~L~~~gIlvr~~~~~~~----------------------------------~~~~lRisi 336 (354)
T d1fg7a_ 298 ILARFKA-------SSAVFKSLWDQGIILRDQNKQPS----------------------------------LSGCLRITV 336 (354)
T ss_dssp EEEEETT-------HHHHHHHHHHTTEECEECTTSTT----------------------------------CTTEEEEEC
T ss_pred EEEeCCC-------HHHHHHHHHHCCcEEecCCCCCC----------------------------------CCCEEEEEe
Confidence 9998864 23588899999999988653211 157999999
Q ss_pred CCCCCHHHHHHHHHhhh
Q 010538 480 GYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 480 ~~~~t~eev~~l~~~~~ 496 (508)
+ |.+|.++++++|+
T Consensus 337 g---t~ee~~~~l~aLk 350 (354)
T d1fg7a_ 337 G---TREESQRVIDALR 350 (354)
T ss_dssp C---CHHHHHHHHHHHH
T ss_pred C---CHHHHHHHHHHHh
Confidence 8 8999999999887
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.92 E-value=5.7e-24 Score=219.47 Aligned_cols=361 Identities=11% Similarity=0.025 Sum_probs=234.1
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCC-CccchhhhhhHHHHHHHHHHHHHcCC--CC-CCceEEEcCChH
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPH-SQSDISLATCDIVRAAREQVLDYFNA--SM-KDYKCIFTSGAT 113 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~la~~~~~--~~-~~~~i~~t~g~t 113 (508)
.+.|-|..|.... +|+.+.+++.+..... .+. ..|....+..++.+++.+.+++.+|. .+ + +|++|+|++
T Consensus 26 ~~~I~L~~G~Pd~~~p~~i~eal~~a~~~~---~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~--~I~it~G~~ 100 (418)
T d2r5ea1 26 YKPLNLGQGFPDYHAPKYALNALAAAANSP---DPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMT--EVLVTVGAY 100 (418)
T ss_dssp HCCEECSSSCCSSCCCHHHHHHHHHHHTCS---CGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTT--SEEEESHHH
T ss_pred CCCEEccCCCCCCCCCHHHHHHHHHHHhCC---CccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccc--eEEEcCCCc
Confidence 3567777665433 3566666665543211 111 12332223344455555555555565 33 5 799999999
Q ss_pred HHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCC
Q 010538 114 AALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFP 193 (508)
Q Consensus 114 ~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~ 193 (508)
+|+.+++.++ ..+|+.|+++...|+++...... .|.+++.|+++.+...... .......+++++.
T Consensus 101 ~al~~~~~~l-~~~gd~vlv~~P~y~~~~~~~~~---~g~~~~~v~~~~~~~~~~~-----~~~~~~~~~~~~~------ 165 (418)
T d2r5ea1 101 EALYATIQGH-VDEGDEVIIIEPFFDCYEPMVKA---AGGIPRFIPLKPNKTGGTI-----SSADWVLDNNELE------ 165 (418)
T ss_dssp HHHHHHHHHH-CCTTCEEEEEESCCTTHHHHHHH---TTCEEEEEECEESCCSSCE-----EGGGEECCHHHHH------
T ss_pred hhhhhhhhhc-cccccceeccccccchhhHHHHH---cCCeEEEEEecccccccch-----hhhhhhhhHHHHh------
Confidence 9999999999 68899999999888887766554 5999999988653321100 1122234566666
Q ss_pred CCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC----CCCCCC----CC
Q 010538 194 ERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ----PPDLSK----YP 265 (508)
Q Consensus 194 ~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~----~~d~~~----~~ 265 (508)
....++++++++++++||||.+++.+++.++++ +|++++++||.|+++..... ...+.. .+
T Consensus 166 --~~~~~~~~~~~i~~p~NPtG~~~s~e~~~~l~~---------~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~ 234 (418)
T d2r5ea1 166 --ALFNEKTKMIIINTPHNPLGKVMDRAELEVVAN---------LCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWE 234 (418)
T ss_dssp --HHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH---------HHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGG
T ss_pred --hhhhccccceecCCcCccccccccHHHHHHHhh---------hhhcCCeeeecccchhhhccCCCccccccccccccc
Confidence 233578899999999999999999998888777 56679999999999865321 112111 12
Q ss_pred CcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHH
Q 010538 266 VDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGF 343 (508)
Q Consensus 266 ~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al 343 (508)
.-+++.|++|.++.| | +||++++++.++.+..... ....++++..+.+++ ..+
T Consensus 235 ~~i~~~S~SK~~~~p-GlRiG~~~~~~~~i~~~~~~~~-----------------------~~~~~~~~~~q~a~~-~~l 289 (418)
T d2r5ea1 235 RTITIGSAGKTFSLT-GWKIGWAYGPEALLKNLQMVHQ-----------------------NCVYTCATPIQEAIA-VGF 289 (418)
T ss_dssp GEEEEEEHHHHTTCG-GGCCEEEESCHHHHHHHHHHHT-----------------------TTTCSCCHHHHHHHH-HHH
T ss_pred eeeeeecCCccccCC-Ccccccccccchhhhhhhhccc-----------------------ccccccccchhhhcc-ccc
Confidence 347888999998844 6 8999999998876654311 011122333332222 222
Q ss_pred HH-HH-----hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCC-------
Q 010538 344 NL-IN-----SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGS------- 410 (508)
Q Consensus 344 ~~-~~-----~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------- 410 (508)
.- .. +..+..++++++..++++.+.|+++ ++++..|.+ +.++|+++......
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-------g~~~~~P~g--------g~f~~~~~~~~~~~~~~~~~~ 354 (418)
T d2r5ea1 290 ETELKRLKSPECYFNSISGELMAKRDYMASFLAEV-------GMNPTVPQG--------GYFMVADWSSLDSKVDLTQET 354 (418)
T ss_dssp HHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHT-------TCEEEECSB--------SSEEEEECGGGSTTCCGGGCC
T ss_pred cccccccccchhhHHHHHHHHHHhhhhHHhhHhhc-------CCcccCCCc--------eeEEEEEcccccccccchhcc
Confidence 21 10 1125778888899999999999987 688776655 78899887642111
Q ss_pred -ccCHHHHH-HHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHH
Q 010538 411 -WFGYREVE-KLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDA 488 (508)
Q Consensus 411 -~~~~~~l~-~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev 488 (508)
..+..++. .+|+++||.+.+|..|...... ....+++|||+. .++|++
T Consensus 355 ~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~----------------------------~~g~~~iRis~~--~~~e~l 404 (418)
T d2r5ea1 355 DARKDYRFTKWMTKSVGLQGIPPSAFYSEPNK----------------------------HLGEDFVRYCFF--KKDENL 404 (418)
T ss_dssp CSSHHHHHHHHHHHHHSEECBCGGGGSCGGGH----------------------------HHHTTEEEEECC--SCHHHH
T ss_pred cccCHHHHHHHHHHHCCEEEeCchhhCCCCCc----------------------------cCCCCEEEEEec--CCHHHH
Confidence 01222344 4556789999999876543210 012578999996 488999
Q ss_pred HHHHHhhhhhhh
Q 010538 489 KVNRCSSFDFVN 500 (508)
Q Consensus 489 ~~l~~~~~~~~~ 500 (508)
+..+++|++|++
T Consensus 405 ~~a~~rl~~~lg 416 (418)
T d2r5ea1 405 QKAAEILRKWKG 416 (418)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 999999988764
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.92 E-value=3.5e-24 Score=219.49 Aligned_cols=348 Identities=13% Similarity=0.007 Sum_probs=227.1
Q ss_pred CCCeeeeCCCC----CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCC--CCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA----TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA--SMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~--~~~~~~i~~t~g~ 112 (508)
.++|.|.-+-. -++|+.+.+++.+.... ....|.......++.+++.+.+.+..|. +++ +|++|+|+
T Consensus 30 ~~vi~l~~G~P~~~df~~p~~i~~a~~~a~~~-----~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~--~i~i~~G~ 102 (395)
T d1xi9a_ 30 IKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKE-----GHNYYGDSEGLPELRKAIVEREKRKNGVDITPD--DVRVTAAV 102 (395)
T ss_dssp CCCEECCCCCGGGTTCCCCHHHHHHHHHHHHT-----TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGG--GEEEESHH
T ss_pred CCeEECCCCCCCCCCCCCCHHHHHHHHHHHhc-----CCCCCCCCCCCHHHHHHHHHhhhhccccccccc--cccccccc
Confidence 56889986532 24566777776554422 1122322222334445555555555555 566 89999999
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCC
Q 010538 113 TAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASF 192 (508)
Q Consensus 113 t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l 192 (508)
++++.+++.++ ..+|++|+++...|+.+... ++..|.+++.+|....... .+|++.++ +.+
T Consensus 103 ~~~~~~~~~~~-~~~Gd~vlv~~P~y~~~~~~---~~~~g~~~v~v~~~~~~~~-------------~~d~~~~~--~~~ 163 (395)
T d1xi9a_ 103 TEALQLIFGAL-LDPGDEILVPGPSYPPYTGL---VKFYGGKPVEYRTIEEEDW-------------QPDIDDIR--KKI 163 (395)
T ss_dssp HHHHHHHHHHH-CCTTCEEEEEESCCHHHHHH---HHHTTCEEEEEEEEGGGTS-------------EECHHHHH--HHC
T ss_pred chhhhhhhhhh-cCCCCEEEEcCCccccchhh---hhhcCCEEEEEeccccccc-------------cchHHHHH--Hhh
Confidence 99999999998 67899999888666655444 4556999999987643332 23677887 443
Q ss_pred CCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC---CCC---CCCCCC
Q 010538 193 PERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ---PPD---LSKYPV 266 (508)
Q Consensus 193 ~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~---~~d---~~~~~~ 266 (508)
.++++++++++++||||.+++.+++.++++ +|++++++|+.|.++..-.. +.. +....-
T Consensus 164 ------~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~---------~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~ 228 (395)
T d1xi9a_ 164 ------TDRTKAIAVINPNNPTGALYDKKTLEEILN---------IAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVP 228 (395)
T ss_dssp ------CTTEEEEEEESSCTTTCCCCCHHHHHHHHH---------HHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSC
T ss_pred ------cccccEEEecCCCCCccchhhHHHHHHHHh---------hhhhcCeeEEeccccccccccccccchhhcCCCCC
Confidence 568899999999999999999998888887 67779999999999864221 111 122223
Q ss_pred cEEEEeccccccCCCc--ceEEEEech--hHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHH
Q 010538 267 DFVVMSFYKIFGYPTG--LGALIMRND--AAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHG 342 (508)
Q Consensus 267 D~~~~S~~K~~g~P~G--~G~l~~~~~--~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~a 342 (508)
-+++.|++|.|+.| | +||+++... .+..+...... .... ...++.....++..+
T Consensus 229 vi~~~S~SK~~~~~-GlRvG~~~~~~~~~~~~~~~~~~~~--------------------~~~~-~~~~~~~~q~a~~~~ 286 (395)
T d1xi9a_ 229 VIVMNGLSKVYFAT-GWRLGYMYFVDPENKLSEVREAIDR--------------------LARI-RLCPNTPAQFAAIAG 286 (395)
T ss_dssp EEEEEESTTTTCCG-GGCCEEEEEECTTCTTHHHHHHHHH--------------------HHHH-TCCSCSHHHHHHHHH
T ss_pred EEEEeCcchhcccc-hhhcEeeEecCHHHHHHHHHHHHHH--------------------hhcC-CCCcCHHHHHHHHHH
Confidence 48888999998844 7 899887532 22222111000 0011 122233333333334
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHh
Q 010538 343 FNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLAS 422 (508)
Q Consensus 343 l~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~ 422 (508)
+... +..+++.++++++.++++.+.|+++. ++.+..|.+ +.++|++++..... -+...+.++|+
T Consensus 287 l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~------~~~~~~p~g--------g~~~~~~l~~~~~~-~~~~~~~~ll~ 350 (395)
T d1xi9a_ 287 LTGP-MDYLKEYMKKLKERRDYIYKRLNEIP------GISTTKPQG--------AFYIFPKIEVGPWK-NDKEFVLDVLH 350 (395)
T ss_dssp HHSC-CHHHHHHHHHHHHHHHHHHHHHHTST------TEECCCCCB--------SSEECCEECSCSCS-SHHHHHHHHHH
T ss_pred hcCC-HHHHHHHHHHHHHHHHHHHHHHHhCC------CceecCCCe--------eEEEeEECCCCCCC-CHHHHHHHHHH
Confidence 3321 12367778888999999999999873 566655543 78888888643211 11223456678
Q ss_pred hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 423 LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 423 ~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
++||.+.+|..|... ..+++|||+. ++.|+++..++.|+++++
T Consensus 351 ~~gV~v~PG~~Fg~~---------------------------------~~~~~Ris~~--~~~e~l~eal~rl~~~l~ 393 (395)
T d1xi9a_ 351 NAHVLFVHGSGFGEY---------------------------------GAGHFRAVFL--PPIEILEEAMDRFEKFMK 393 (395)
T ss_dssp HHCEECEEGGGGCGG---------------------------------GTTBEEEECC--SCHHHHHHHHHHHHHHHH
T ss_pred hCCEEEEcChhhCCC---------------------------------CCCEEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 889999999766432 2678999986 578999999999888765
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.92 E-value=5.6e-24 Score=218.99 Aligned_cols=352 Identities=13% Similarity=0.027 Sum_probs=220.6
Q ss_pred CCCeeeeCCCC-----CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc--------CCCCCCce
Q 010538 39 NGTVYLDHAGA-----TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF--------NASMKDYK 105 (508)
Q Consensus 39 ~~~iyld~~~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~--------~~~~~~~~ 105 (508)
+++|.|..+-. .++++.+++++.+..... ....|....+..++.+++.+.+.+.+ +++++ +
T Consensus 30 ~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~--~ 103 (412)
T d1bw0a_ 30 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQ----ECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKD--N 103 (412)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTT----CSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGG--G
T ss_pred CCcEECcCCCCCCCCCccccHHHHHHHHHHhhCC----CCCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCC--e
Confidence 45788876532 233455666654332111 11123222222333333333333332 25677 8
Q ss_pred EEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhh
Q 010538 106 CIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQ 185 (508)
Q Consensus 106 i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~ 185 (508)
|++|+|+++|+.+++.++ ..+|+.|+++...|+.+... ++..|++++.+|++..+.. .++++.
T Consensus 104 I~it~G~~~al~~~~~~l-~~~Gd~Vlv~~P~y~~~~~~---~~~~G~~~~~v~~~~~~~~-------------~~~~~~ 166 (412)
T d1bw0a_ 104 VVLCSGGSHGILMAITAI-CDAGDYALVPQPGFPHYETV---CKAYGIGMHFYNCRPENDW-------------EADLDE 166 (412)
T ss_dssp EEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTHHHHH---HHHTTCEEEEEEEEGGGTT-------------EECHHH
T ss_pred EEEecccccchhhhhhhh-hccccceeeeeccchhhhhh---hhccCcccccccccccccc-------------chhhHH
Confidence 999999999999999999 68899999998777666544 4456999999998764433 125777
Q ss_pred hhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCCCCC
Q 010538 186 RRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQPPDL 261 (508)
Q Consensus 186 l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d~ 261 (508)
++ ++ ..++++++++++++||||.+++.+++.++++ +|++++++||+|+++.. +..+...
T Consensus 167 l~--~~------~~~~~~~~~l~np~NPtG~~~~~~~~~~i~~---------~~~~~~~~vi~De~Y~~~~~~~~~~~~~ 229 (412)
T d1bw0a_ 167 IR--RL------KDDKTKLLIVTNPSNPCGSNFSRKHVEDIVR---------LAEELRLPLFSDEIYAGMVFKGKDPNAT 229 (412)
T ss_dssp HH--HH------CCTTEEEEEEESSCTTTCCCCCHHHHHHHHH---------HHHHHTCCEEEECTTTTCBCCSSCTTCC
T ss_pred HH--hh------hhccccccccccccccccccchhhhcccccc---------ccccCCeeeechhhHHHhccCCCCCccc
Confidence 77 33 3578899999999999999999998888887 56679999999999863 2222111
Q ss_pred -------CCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCC
Q 010538 262 -------SKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTAS 332 (508)
Q Consensus 262 -------~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~ 332 (508)
.....-+++.|++|.++.| | +||+++++.......-. .... .......++.+
T Consensus 230 ~~~~~~~~~~~~~~~~~s~SK~~~~~-G~RvG~~~~~~~~~~~~~~~-~~~~-----------------~~~~~~~~~~~ 290 (412)
T d1bw0a_ 230 FTSVADFETTVPRVILGGTAKNLVVP-GWRLGWLLYVDPHGNGPSFL-EGLK-----------------RVGMLVCGPCT 290 (412)
T ss_dssp CCCTTSSCCSCCEEEEEESTTTTSCG-GGCCEEEEEECTTCSCHHHH-HHHH-----------------HHHHHHTCSCH
T ss_pred cccccccccccccccccccCccCccC-CCCcccccccchhhcchhhh-hhhc-----------------cccccccCCch
Confidence 1112236778999988844 7 89999986543211100 0000 00111112222
Q ss_pred hhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCc-
Q 010538 333 FLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSW- 411 (508)
Q Consensus 333 ~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~- 411 (508)
..+..+...+.... +..+..+++++.+.++++.+.|.+. .++.+..|.+ +.+++.+++......
T Consensus 291 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~l~~~------~g~~~~~p~g--------g~~l~~~~~~~~~~~~ 355 (412)
T d1bw0a_ 291 VVQAALGEALLNTP-QEHLDQIVAKIEESAMYLYNHIGEC------IGLAPTMPRG--------AMYLMSRIDLEKYRDI 355 (412)
T ss_dssp HHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHHHHHHTTS------TTEEECCCCB--------TTEEEEEECGGGBSSC
T ss_pred hhhhhccccccccc-ccccccccchhHHHHHHHHHHHHHh------cCceecCCCC--------ceEEEEeCChhhcCCC
Confidence 22222222121111 1135777888899999999999876 3788776654 688888876321100
Q ss_pred cCHHHH-HHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHH
Q 010538 412 FGYREV-EKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKV 490 (508)
Q Consensus 412 ~~~~~l-~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~ 490 (508)
-+..++ .++|+++||.+.+|..|.. ++++|||+. .+.++++.
T Consensus 356 ~~~~~~~~~ll~~~gV~v~PG~~Fg~-----------------------------------~g~iRis~~--~~~e~l~e 398 (412)
T d1bw0a_ 356 KTDVEFFEKLLEEENVQVLPGTIFHA-----------------------------------PGFTRLTTT--RPVEVYRE 398 (412)
T ss_dssp CSHHHHHHHHHHHHCEECEEGGGGTC-----------------------------------TTEEEEECC--SCHHHHHH
T ss_pred CCHHHHHHHHHHhCCEEEEeccccCC-----------------------------------CCeEEEEEc--CCHHHHHH
Confidence 122234 4555778999999875421 579999987 47888998
Q ss_pred HHHhhhhhhhh
Q 010538 491 NRCSSFDFVNF 501 (508)
Q Consensus 491 l~~~~~~~~~~ 501 (508)
.++.|++|++.
T Consensus 399 al~Rl~~~l~~ 409 (412)
T d1bw0a_ 399 AVERIKAFCQR 409 (412)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888887653
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.92 E-value=3.9e-24 Score=217.91 Aligned_cols=370 Identities=12% Similarity=0.044 Sum_probs=249.6
Q ss_pred hhHHHHHHHHhcccCCCCCCCCchHHHHHHhhccCC------CCCeeeeCCCCCC----CCHHHHHHHHHHhhccccCCC
Q 010538 3 YADKEEFLKEFGEDYGYPNAPKSIDQIRATEFKRLE------NGTVYLDHAGATL----YSELQMEAIFRDFTTNVYGNP 72 (508)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~f~~~~------~~~iyld~~~~~~----~~~~~~~a~~~~~~~~~~~~~ 72 (508)
++++.+-|++=+ .|.... .+++-+. .||... .+.-.+|.++... -+|.++++..+.... |+.-
T Consensus 6 ~~~~l~~l~~~g-~~r~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~FsSndYLGL~~~p~v~~a~~~al~~--yG~g 78 (396)
T d2bwna1 6 LDKAIQKLHDEG-RYRTFI---DIEREKG-AFPKAQWNRPDGGKQDITVWCGNDYLGMGQHPVVLAAMHEALEA--VGAG 78 (396)
T ss_dssp HHHHHHHHHHTT-CCCCCC---EEEECTT-STTEEEEECTTSCEEEEEECSCSCTTSGGGCHHHHHHHHHHHHH--HCSC
T ss_pred HHHHHHHHHHcC-CCcccc---ccccccC-CCCcceEeecCCCCeEEEEEEcccccCcCCCHHHHHHHHHHHHH--hCCC
Confidence 345566666655 255444 4443332 444210 2233444444322 278888887665533 3222
Q ss_pred CCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcC-CCCCCeEEEecccccchHHHHHHHHhc
Q 010538 73 HSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFP-WSHQSSYMYTMENHNSVLGIREYALSQ 151 (508)
Q Consensus 73 ~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~-~~~g~~vl~~~~~h~s~~~~~~~~~~~ 151 (508)
....+.-.......+++++.+|+++|.+.. ++.+++..|+..++.++. ..+++.|+.....|.++....+. .
T Consensus 79 s~~Sr~~~G~~~~h~~LE~~lA~~~g~e~a----ll~~sG~~An~~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~l---s 151 (396)
T d2bwna1 79 SGGTRNISGTTAYHRRLEAEIAGLHQKEAA----LVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKR---N 151 (396)
T ss_dssp CCSBTTTBCCBHHHHHHHHHHHHHTTCSEE----EEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHH---S
T ss_pred ccccccccCCchHHHHHHHHHHHHhCCCce----eeeecchHHHHHHHHHHhcccCCCceeehhhhhhccchhhhc---c
Confidence 212222233567889999999999999754 555556667877777763 35778999999999887766554 4
Q ss_pred CCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCc
Q 010538 152 GAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPE 231 (508)
Q Consensus 152 G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~ 231 (508)
+++++.++.++... ++.+. + .....+.++|++..+.+++|.+.|+++|.+++++
T Consensus 152 ~a~~~~f~Hnd~~~-----------------l~~l~--~-----~~~~~~~~~iv~egvySmdGd~apl~~l~~L~~~-- 205 (396)
T d2bwna1 152 AGPKRIFRHNDVAH-----------------LRELI--A-----ADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEE-- 205 (396)
T ss_dssp CCCEEEECTTCHHH-----------------HHHHH--H-----HSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHH--
T ss_pred ccCceEeecchHHH-----------------hhhHH--h-----hhcccCceeEEEEeeccCcccccccHhHHHHhhh--
Confidence 78888877653221 22222 1 1123456899999999999999999999999998
Q ss_pred cccccCCCCCCCeEEEEeccccCCCCCCCCC--------CCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccC
Q 010538 232 RILEISPFSKGRWMVLIDAAKGCVTQPPDLS--------KYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSG 303 (508)
Q Consensus 232 ~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~--------~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~ 303 (508)
+|++++||++|++|....+-. ...+|++++|+.|.|| -.| |++..+++.++.++..-.
T Consensus 206 ----------y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g-~~G-g~v~~~~~~i~~l~~~~~-- 271 (396)
T d2bwna1 206 ----------FGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYG-VFG-GYIAASARMVDAVRSYAP-- 271 (396)
T ss_dssp ----------HTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTC-SCC-EEEEECHHHHHHHHHHCH--
T ss_pred ----------hcceeeeccceeeeeeccccccchhhcCCceeeeeeeeccccccc-ccc-cccchhHHHHHHHHhhcc--
Confidence 999999999999988654321 1247999999999999 445 888888888776653310
Q ss_pred ceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEE
Q 010538 304 GTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTI 383 (508)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~ 383 (508)
.. ..++.++++.++++.++++.+.+......++++..+.+++++.+..+ ++.+
T Consensus 272 -------------------~~-ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~-------g~~~ 324 (396)
T d2bwna1 272 -------------------GF-IFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-------GMPI 324 (396)
T ss_dssp -------------------HH-HTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-------TCCB
T ss_pred -------------------hh-hhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhc-------CCCc
Confidence 11 12344566677777888888765434666778888999999999886 5555
Q ss_pred ecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHH-HhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCC
Q 010538 384 YGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKL-ASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWD 462 (508)
Q Consensus 384 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~-L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 462 (508)
... . ++|+.+.+.+... ...+.+. |+++||.+.+...++.+.
T Consensus 325 ~~~-~--------spIvpv~ig~~~~----~~~~a~~lL~e~Gi~v~~i~~PtVp~------------------------ 367 (396)
T d2bwna1 325 IDH-G--------SHIVPVVIGDPVH----TKAVSDMLLSDYGVYVQPINFPTVPR------------------------ 367 (396)
T ss_dssp CCC-S--------SSCEEEECCCHHH----HHHHHHHHHHHHCEECCEECTTTSCT------------------------
T ss_pred CCC-C--------CCEEEEEeCCHHH----HHHHHHHHHHhCCEEEEEECCCcCCC------------------------
Confidence 432 2 7899888854311 1235554 678899998876655543
Q ss_pred CccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 463 DNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 463 ~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
....+||+++..+|.+|||+++++|+++
T Consensus 368 --------g~~rlRi~lsa~ht~edId~l~~~L~~i 395 (396)
T d2bwna1 368 --------GTERLRFTPSPVHDLKQIDGLVHAMDLL 395 (396)
T ss_dssp --------TCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred --------CCeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence 2567999999999999999999999874
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=6.6e-24 Score=219.06 Aligned_cols=374 Identities=11% Similarity=0.028 Sum_probs=238.3
Q ss_pred chHHHHHHhhccCCCCCeeeeCCCCCCC-CHHHHHHHHHHhhccccCCCC-CccchhhhhhHHHHHHHHHHHHHcCCCCC
Q 010538 25 SIDQIRATEFKRLENGTVYLDHAGATLY-SELQMEAIFRDFTTNVYGNPH-SQSDISLATCDIVRAAREQVLDYFNASMK 102 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~~~iyld~~~~~~~-~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~la~~~~~~~~ 102 (508)
.|.++++ . .. ++++|.|.-|-...+ |+.+++++.+ .+.+ .+. ..|....+...+.+++.+.+.+.+|.+.+
T Consensus 14 ~~~~~~~-~-~~-~~dvI~l~~G~p~~~~p~~v~~a~~~-al~~---~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~ 86 (418)
T d1w7la_ 14 PWVEFVK-L-AS-EHDVVNLGQGFPDFPPPDFAVEAFQH-AVSG---DFMLNQYTKTFGYPPLTKILASFFGELLGQEID 86 (418)
T ss_dssp THHHHHH-H-HH-TSCCEECCCCSCSSCCCHHHHHHHHH-HTSS---CGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHH-H-hC-CCCCEECCCCCCCCCCCHHHHHHHHH-HHhC---CCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCC
Confidence 5666654 2 22 267899988775544 5555565544 3321 111 12332222334455555555555576532
Q ss_pred -CceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCcccccccccccccccc
Q 010538 103 -DYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISL 181 (508)
Q Consensus 103 -~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~ 181 (508)
..+|++|+|+++|+.+++.++ ..+|+.|+++...++.+...... .|.+++.++......... .........+
T Consensus 87 ~~~~I~it~G~~~al~~~~~~l-~~~g~~vlv~~p~~~~y~~~~~~---~g~~~v~~~~~~~~~~~~---~~~~~~~~~~ 159 (418)
T d1w7la_ 87 PLRNVLVTVGGYGALFTAFQAL-VDEGDEVIIIEPFFDCYEPMTMM---AGGRPVFVSLKPGPIQNG---ELGSSSNWQL 159 (418)
T ss_dssp HHHHEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTTHHHHHHH---TTCEEEEEECEECC---C---CSEEGGGEEC
T ss_pred cccceeeccCcHHHHHHHHHhh-ccCCceeeccccccchhHHHHHH---cCCEeecccccccccccc---ccccccCccc
Confidence 117999999999999999999 68899999999888877766554 588888887653110000 0001122233
Q ss_pred chhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCC
Q 010538 182 LPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQ 257 (508)
Q Consensus 182 d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~ 257 (508)
|..++. ...+++++++++++++||||.+++.+++.++++ +|++++++||+|+++.. +..
T Consensus 160 d~~~~~--------~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~i~~---------~a~~~~v~vI~De~Y~~l~~~~~~ 222 (418)
T d1w7la_ 160 DPMELA--------GKFTSRTKALVLNTPNNPLGKVFSREELELVAS---------LCQQHDVVCITDEVYQWMVYDGHQ 222 (418)
T ss_dssp CHHHHH--------HHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH---------HHHHHTCEEEEECTTTTCBCTTCC
T ss_pred chhhhh--------ccccccccceeccCcCCcccccccHHHHHHHHH---------HHHhcCCCchhhhhhHHhhcCCCC
Confidence 455555 234678899999999999999999988887777 56679999999999864 222
Q ss_pred CCCCCC---C-CCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCC
Q 010538 258 PPDLSK---Y-PVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTA 331 (508)
Q Consensus 258 ~~d~~~---~-~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 331 (508)
+.++.. . +-.+++.|++|.++.| | +||+++++++++.+...... ...+++
T Consensus 223 ~~~~~~~~~~~~~~i~~~S~SK~~~~p-G~RvG~~v~~~~~~~~l~~~~~~-----------------------~~~~~~ 278 (418)
T d1w7la_ 223 HISIASLPGMWERTLTIGSAGKTFSAT-GWKVGWVLGPDHIMKHLRTVHQN-----------------------SVFHCP 278 (418)
T ss_dssp CCCGGGSTTTGGGEEEEEEHHHHTTCG-GGCCEEEECCHHHHHHHHHHHHT-----------------------TTSCCC
T ss_pred CCCHHHccccccccceecccCccccCC-CCcccccccchhhhhhhcccccc-----------------------cccccc
Confidence 233222 1 2358899999988845 6 89999999887766544111 112233
Q ss_pred ChhHHHHHHHHHHHHH------hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEee
Q 010538 332 SFLSIASIRHGFNLIN------SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLK 405 (508)
Q Consensus 332 ~~~~~~~l~~al~~~~------~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 405 (508)
+..+.+ +..++.-.. ...+....+++++.++++.+.|.+. |+++..|.+ +.++|++++
T Consensus 279 ~~~q~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-------g~~~~~P~g--------g~f~~~~~~ 342 (418)
T d1w7la_ 279 TQSQAA-VAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-------GLKPLIPQG--------SYFLITDIS 342 (418)
T ss_dssp HHHHHH-HHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-------TCEEEECSB--------SSEEEEECH
T ss_pred chhhHH-HHHHhhhccccccccccccccchhhhhhhhhhhhhhhhhc-------CCcccCCCc--------eeEEEEECc
Confidence 333332 333333211 1124667788888999999999886 688776654 788999875
Q ss_pred CC----------CCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceE
Q 010538 406 RP----------DGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAI 475 (508)
Q Consensus 406 ~~----------~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i 475 (508)
+. .....+.....++|+++||.+.+|..|...... ...+++|
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~----------------------------~~~~~~i 394 (418)
T d1w7la_ 343 DFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQ----------------------------KHFDHYI 394 (418)
T ss_dssp HHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHH----------------------------TTSCSEE
T ss_pred ccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCcc----------------------------CCCCCEE
Confidence 31 011112233456678899999999866543211 1126899
Q ss_pred EEecCCCCCHHHHHHHHHhhhhhh
Q 010538 476 RVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 476 Ris~~~~~t~eev~~l~~~~~~~~ 499 (508)
|||+. +++++++..++.|++|.
T Consensus 395 Ris~~--~~~~~l~~a~~rl~~~~ 416 (418)
T d1w7la_ 395 RFCFV--KDEATLQAMDEKLRKWK 416 (418)
T ss_dssp EEECC--CCHHHHHHHHHHHHHHH
T ss_pred EEEEc--CCHHHHHHHHHHHHHHh
Confidence 99986 58899999999998875
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=3.1e-24 Score=221.50 Aligned_cols=367 Identities=12% Similarity=0.062 Sum_probs=223.3
Q ss_pred HHHHhhccC-CCCCeeeeCCCC--CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCC---CCC
Q 010538 29 IRATEFKRL-ENGTVYLDHAGA--TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA---SMK 102 (508)
Q Consensus 29 ~r~~~f~~~-~~~~iyld~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~---~~~ 102 (508)
||+ .++.- +++.|-|..+-. ..+|...+.++.+..+..... ....|....+..++.+++.+.+.+..|. +++
T Consensus 28 ir~-~~~~~~~~~~I~l~~G~Pd~~~~P~~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~ 105 (420)
T d1vp4a_ 28 IRE-ILKFAADKDAISFGGGVPDPETFPRKELAEIAKEIIEKEYH-YTLQYSTTEGDPVLKQQILKLLERMYGITGLDED 105 (420)
T ss_dssp HHH-HTTTTTSTTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHH-HHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGG
T ss_pred HHH-HHHHhCCCCcEecCCcCCCCccCCHHHHHHHHHHHHhhCCc-cccCCCCCcCCHHHHHHHHHHHHHHhCCCCCCHH
Confidence 555 55432 278888876532 223555555554444332100 0011222112233444444444444453 566
Q ss_pred CceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccC-cccccccccccccccc
Q 010538 103 DYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVD-NDGLSESLVTSTKISL 181 (508)
Q Consensus 103 ~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~-~~~l~~~~~~~~~~~~ 181 (508)
+|++|+|+++|+.+++.++ ..+|+.|+++...|+.+... ++..|++++.+|.++.+. ++.+ ..
T Consensus 106 --~I~it~G~~~al~~~~~~~-~~~Gd~Vlv~~P~y~~~~~~---~~~~g~~~~~~~~~~~~~~~~~l----------~~ 169 (420)
T d1vp4a_ 106 --NLIFTVGSQQALDLIGKLF-LDDESYCVLDDPAYLGAINA---FRQYLANFVVVPLEDDGMDLNVL----------ER 169 (420)
T ss_dssp --GEEEEEHHHHHHHHHHHHH-CCTTCEEEEEESCCHHHHHH---HHTTTCEEEEEEEETTEECHHHH----------HH
T ss_pred --HeEeccchhhhHHHHHHhh-hccccccccccccccchhHH---HHHHhhhcccccccccccccchh----------hh
Confidence 8999999999999999998 68899999998666655444 455699999999875432 2111 00
Q ss_pred chhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC----
Q 010538 182 LPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ---- 257 (508)
Q Consensus 182 d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~---- 257 (508)
...... .. ....+.+.++++++++||||.+++.+++.++++ +|+++++++|+|++++.-.-
T Consensus 170 ~~~~~~--~~----~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~---------~a~~~~i~ii~De~y~~l~~~~~~ 234 (420)
T d1vp4a_ 170 KLSEFD--KN----GKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVE---------IAEKYDLFIVEDDPYGALRYEGET 234 (420)
T ss_dssp HHHHHH--HT----TCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHH---------HHHHTTCEEEEECSSTTCBCSSCC
T ss_pred hhhhhH--HH----hhccccceeeEecCCCCccchhhhhhhhhhhhh---------hhhcccccccccchhhhccccCcc
Confidence 011111 00 112345677888999999999999887777776 56679999999999864211
Q ss_pred CCCC---CCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCC
Q 010538 258 PPDL---SKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTAS 332 (508)
Q Consensus 258 ~~d~---~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~ 332 (508)
.... ...+.-+++.|++|+++ | | +||+++++++++.+..... ....+++.
T Consensus 235 ~~~~~~~~~~~~~i~~~s~sk~~~-~-G~RiG~~~~~~~~i~~l~~~~~-----------------------~~~~~~~~ 289 (420)
T d1vp4a_ 235 VDPIFKIGGPERVVLLNTFSKVLA-P-GLRIGMVAGSKEFIRKIVQAKQ-----------------------SADLCSPA 289 (420)
T ss_dssp CCCHHHHHCTTTEEEEEESTTTTC-G-GGCEEEEECCHHHHHHHHHHHH-----------------------HHHSSCCH
T ss_pred cccccccccccceeEEeccccccc-c-ccccccccccchhhhhhhhhhh-----------------------hccccCch
Confidence 1111 12245577888888776 6 6 8999999998876654311 11122333
Q ss_pred hhHHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCC-CCC
Q 010538 333 FLSIASIRHGFNLI-NSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRP-DGS 410 (508)
Q Consensus 333 ~~~~~~l~~al~~~-~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 410 (508)
..+. +....++.. ....+....+++++.++.+.+.|++... ..+++++..|.+ +.++|+++++. +..
T Consensus 290 ~~q~-~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~--~~~g~~~~~p~g--------g~f~~~~~~~~~d~~ 358 (420)
T d1vp4a_ 290 ITHR-LAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFS--DIPGVKWVKSEG--------GLFIWLTLPEGFDTW 358 (420)
T ss_dssp HHHH-HHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHST--TSTTCEECCCSB--------SSEEEEECCTTCCTT
T ss_pred hhhh-hhhhhcccccccccchhHHHHhhhhcccchhhhhhhhc--cCCCcEEecCCc--------eEEEEEECCCCCCHH
Confidence 3222 222222210 0011345556666666666666654310 124688876654 78999998753 333
Q ss_pred ccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHH
Q 010538 411 WFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKV 490 (508)
Q Consensus 411 ~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~ 490 (508)
++.+.|.++||.+.+|+.|.... ...+++|||++. .+.|+++.
T Consensus 359 -----~~~~~l~~~gV~v~PG~~F~~~~-------------------------------~~~~~iRls~~~-~~~e~l~~ 401 (420)
T d1vp4a_ 359 -----EMFEYAKRKKVFYVPGRVFKVYD-------------------------------EPSPSMRLSFCL-PPDEKIVE 401 (420)
T ss_dssp -----TTHHHHHHHTEECEEGGGGCTTC-------------------------------CCCSEEEEECSS-SCHHHHHH
T ss_pred -----HHHHHHHHCCeEEEechhhCCCC-------------------------------CCCCEEEEEeCc-CCHHHHHH
Confidence 36788999999999997664321 136799999974 57889999
Q ss_pred HHHhhhhhhhh
Q 010538 491 NRCSSFDFVNF 501 (508)
Q Consensus 491 l~~~~~~~~~~ 501 (508)
.++.|+++++.
T Consensus 402 a~~rL~~~l~~ 412 (420)
T d1vp4a_ 402 GIKRLREVVLE 412 (420)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888754
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.91 E-value=1.1e-24 Score=225.93 Aligned_cols=310 Identities=12% Similarity=0.085 Sum_probs=206.7
Q ss_pred HHHHHHHHHHc----C----CCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEE
Q 010538 87 RAAREQVLDYF----N----ASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAI 158 (508)
Q Consensus 87 ~~~r~~la~~~----~----~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v 158 (508)
.++|+.+|+++ | ++++ +|++|+|+++|+.+++.++ ..+|+.|+++...|+.+...... ..|++++.+
T Consensus 87 ~~LR~aiA~~l~~~~~~~~~~~pe--~I~it~G~~~al~~~~~~l-~~pGd~Vlv~~P~y~~~~~~~~~--~~g~~~v~v 161 (431)
T d1m7ya_ 87 PAFKKAMVDFMAEIRGNKVTFDPN--HLVLTAGATSANETFIFCL-ADPGEAVLIPTPYYPGFDRDLKW--RTGVEIVPI 161 (431)
T ss_dssp HHHHHHHHHHHHHHTTTSSCCCGG--GEEEEEHHHHHHHHHHHHH-CCTTCEEEEEESCCTTHHHHTTT--TTCCEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcc--eEEECCCHHHHHHHHHHHh-cCCCCEEEEeCCCchhHHHHHHH--hcCceeccc
Confidence 34556666554 3 4677 8999999999999999999 68899999998777776655432 247899999
Q ss_pred ccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCC
Q 010538 159 DVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISP 238 (508)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~ 238 (508)
+.+.+..+ .+|++.++ +++.+....+.+++++++++++||||.+++.+++.++++ +
T Consensus 162 ~~~~~~~~-------------~l~~~~~~--~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~---------~ 217 (431)
T d1m7ya_ 162 HCTSSNGF-------------QITETALE--EAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLS---------F 217 (431)
T ss_dssp ECCGGGTS-------------CCCHHHHH--HHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHH---------H
T ss_pred cccchhcc-------------cccHHHhh--hhhhhhhhccCcceEEEecCccccccccccccccccccc---------c
Confidence 88764433 11455555 333221223568899999999999999999887777776 5
Q ss_pred CCCCCeEEEEeccccCC----CCCCCCC-------------CCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccc
Q 010538 239 FSKGRWMVLIDAAKGCV----TQPPDLS-------------KYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNT 299 (508)
Q Consensus 239 ~~~~g~~vivD~a~~~g----~~~~d~~-------------~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~ 299 (508)
|+++|++||+|++++.- ..++++. ..+.-+++.|++|.|| .+| +|+++.+++.+......
T Consensus 218 a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~-~~G~RiG~~~~~~~~i~~~~~~ 296 (431)
T d1m7ya_ 218 VEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLG-LPGFRVGAIYSNDDMVVAAATK 296 (431)
T ss_dssp HHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSC-CGGGCEEEEEESCHHHHHHHHH
T ss_pred ccccCcceeecccccccccCCCCCCCHHHHhhhcccccccccCceEEEEecCccccc-CCCCccceeccchhhhHHHHHH
Confidence 66699999999998641 1111110 0012378889999998 446 89999988775433222
Q ss_pred cccCceEEecccchhhhhhccCccccccCCCCChh--HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCC
Q 010538 300 YFSGGTVAASIADIDFVKRRQGVEELFEDGTASFL--SIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENG 377 (508)
Q Consensus 300 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~--~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~ 377 (508)
.. ...++.+.. .++++.....+..+ .+.+.++++++.++.+.+.|++.
T Consensus 297 ~~------------------------~~~~~~~~~~~~~~a~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~----- 346 (431)
T d1m7ya_ 297 MS------------------------SFGLVSSQTQHLLSAMLSDKKLTKN-YIAENHKRLKQRQKKLVSGLQKS----- 346 (431)
T ss_dssp HG------------------------GGSCCCHHHHHHHHHHHHCHHHHHH-HHHHHHHHHHHHHHHHHHHHHTT-----
T ss_pred Hh------------------------ccccccccccchhhhhhccchhhhh-hhhhhhhhhhhhhhhhhhhhhcC-----
Confidence 11 011122221 12222222233222 36777888888999999999875
Q ss_pred CceEEEecCCCCCcccCCCCceEEEEeeCCC-CCcc-CHHHH-HHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhh
Q 010538 378 ADVCTIYGTYTSEVSYHDTGSMVSFNLKRPD-GSWF-GYREV-EKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNI 454 (508)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~-~~~~l-~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~ 454 (508)
|+++..+.+ +.++|++++..- ...+ +..++ .++|+++||.+.+|..|...
T Consensus 347 --gi~~~~p~g--------g~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~F~~~----------------- 399 (431)
T d1m7ya_ 347 --GISCLNGNA--------GLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCT----------------- 399 (431)
T ss_dssp --TCEECCCCS--------SSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCS-----------------
T ss_pred --CcEEecCCc--------eeEEEEECccccccCcccCHHHHHHHHHHHCCEEEEeccccCCC-----------------
Confidence 788876654 788999987531 1111 11233 44567889999999765432
Q ss_pred hcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 455 EAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
.++++|||++. .++++++..++.|+++++
T Consensus 400 ----------------~~~~~Ri~~a~-~~e~~l~~al~rL~~~l~ 428 (431)
T d1m7ya_ 400 ----------------EPGWFRVCFAN-LPERTLDLAMQRLKAFVG 428 (431)
T ss_dssp ----------------STTEEEEECSS-SCHHHHHHHHHHHHHHHH
T ss_pred ----------------CCCEEEEEeCc-CCHHHHHHHHHHHHHHHH
Confidence 26899999863 467889999998888765
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.91 E-value=4.9e-24 Score=220.71 Aligned_cols=310 Identities=11% Similarity=0.079 Sum_probs=203.2
Q ss_pred HHHHHHHHHHc----C----CCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEE
Q 010538 87 RAAREQVLDYF----N----ASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAI 158 (508)
Q Consensus 87 ~~~r~~la~~~----~----~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v 158 (508)
.++|+.+|+++ | .+++ +|++|+|+++++.+++.++ ..+|+.|+++...|+++...+.. ..|++++.+
T Consensus 86 ~~LR~aiA~~l~~~~~~~~~~~~e--~Ivit~G~~~al~~~~~~l-~~~Gd~Vlv~~P~y~~~~~~~~~--~~g~~~v~v 160 (428)
T d1iaya_ 86 PEFRKAIAKFMEKTRGGRVRFDPE--RVVMAGGATGANETIIFCL-ADPGDAFLVPSPYYPAFNRDLRW--RTGVQLIPI 160 (428)
T ss_dssp HHHHHHHHHHHHHHTTTCSCCCTT--SCEEEEHHHHHHHHHHHHH-CCTTCEEEEESSCCTTHHHHTTT--TTCCEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCChh--hEEEcCCHHHHHHHHHHHh-CCCCCEEEEccCCchHHHHHHHH--hcCCeEEEe
Confidence 45566666654 3 4677 8999999999999999999 68899999998888777654432 358999999
Q ss_pred ccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCC
Q 010538 159 DVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISP 238 (508)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~ 238 (508)
+.+..... .+|++.++ .+++.....+++++++++++++||||.+++.+++.++++ +
T Consensus 161 ~~~~~~~~-------------~~d~~~~~--~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~---------~ 216 (428)
T d1iaya_ 161 HCESSNNF-------------KITSKAVK--EAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLS---------F 216 (428)
T ss_dssp CCCTTTTT-------------CCCHHHHH--HHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHH---------H
T ss_pred eccccccc-------------cccccccc--chhhhhhccCCCceEEEEccCCCcccccccccccchhhe---------e
Confidence 88754332 11444443 221110123678899999999999999999877666665 5
Q ss_pred CCCCCeEEEEeccccCC----CCCCCC-----------CCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccc
Q 010538 239 FSKGRWMVLIDAAKGCV----TQPPDL-----------SKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYF 301 (508)
Q Consensus 239 ~~~~g~~vivD~a~~~g----~~~~d~-----------~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~ 301 (508)
|++||++||+|++++.- ..+.++ ...+..+++.|++|.|+ .+| +|+++..++.+........
T Consensus 217 a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~-~~GlRiG~~~~~~~~l~~~~~~~~ 295 (428)
T d1iaya_ 217 TNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMG-LPGFRVGIIYSFNDDVVNCARKMS 295 (428)
T ss_dssp HHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSS-CGGGCEEEEEESCHHHHHHHHHHH
T ss_pred eccCcEEEEecccccccccCcccccccccccchhhccccccceEEEEecCCCccc-CCCcccccccccccchhhhhhhhh
Confidence 55699999999998741 111111 11123478999999888 446 8999986654332221110
Q ss_pred cCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHH---HHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 010538 302 SGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHG---FNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGA 378 (508)
Q Consensus 302 g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~a---l~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~ 378 (508)
..+..+.....++.+. -+++.+ .+++.++++.+.++.+.+.|+..
T Consensus 296 -------------------------~~~~~~~~~~~~~~a~l~~~~~~~~-~~~~~~~~l~~r~~~~~~~L~~~------ 343 (428)
T d1iaya_ 296 -------------------------SFGLVSTQTQYFLAAMLSDEKFVDN-FLRESAMRLGKRHKHFTNGLEVV------ 343 (428)
T ss_dssp -------------------------TTSCCCHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred -------------------------cccccccccccchhhhhhhhccccc-cccccccccchhHHHHHHHHHhC------
Confidence 0111222222222222 223222 25677778888889999999875
Q ss_pred ceEEEecCCCCCcccCCCCceEEEEeeCCC-CCcc-CHHHHH-HHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhh
Q 010538 379 DVCTIYGTYTSEVSYHDTGSMVSFNLKRPD-GSWF-GYREVE-KLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIE 455 (508)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~-~~~~l~-~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~ 455 (508)
|+++..|.+ +.++|++++..- ...+ +..++. ++|+++||.+.+|..|...
T Consensus 344 -gi~~~~p~g--------g~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~~------------------ 396 (428)
T d1iaya_ 344 -GIKCLKNNA--------GLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQ------------------ 396 (428)
T ss_dssp -TCCBCCCSS--------SSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCS------------------
T ss_pred -CCEEecCCc--------ceEEEEECccccccCCCCCHHHHHHHHHHhCCEEEEcchhcCCC------------------
Confidence 677765544 788999987531 1111 112334 4556789999998755321
Q ss_pred cCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 456 AGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
.++++|+|+. ..++++++..+++|+++++.
T Consensus 397 ---------------~~g~~Ris~a-~~~~~~l~~al~Rl~~~l~~ 426 (428)
T d1iaya_ 397 ---------------EPGWFRVCFA-NMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp ---------------SSSEEEEECS-SSCHHHHHHHHHHHHHHHHT
T ss_pred ---------------CCCEEEEEeC-CCCHHHHHHHHHHHHHHHhh
Confidence 3689999986 34677899999999988764
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=1.4e-22 Score=206.38 Aligned_cols=342 Identities=10% Similarity=0.011 Sum_probs=228.0
Q ss_pred CCCeeeeCCCCCCCC-HHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC--CCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGATLYS-ELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS--MKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~--~~~~~i~~t~g~t~a 115 (508)
++.|.|.-|-...++ +.+.+++.+..... ...|.......++.+++.+.+.+.+|.+ ++ .+|++|+|+++|
T Consensus 26 ~~~i~l~~G~Pd~~~p~~i~~a~~~~~~~~-----~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~-~~I~vt~G~~~a 99 (382)
T d1u08a_ 26 HQAINLSQGFPDFDGPRYLQERLAHHVAQG-----ANQYAPMTGVQALREAIAQKTERLYGYQPDAD-SDITVTAGATEA 99 (382)
T ss_dssp TTCEECCCSSCSSCCCHHHHHHHHHHHHTT-----CCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTT-TTEEEESSHHHH
T ss_pred CCCEEccCCCCCCCCCHHHHHHHHHHHhcC-----CCCCCCCcCCHHHHHHHHHHHHHHhCCCCCCC-ceEEeccchHHH
Confidence 577888876654444 44445554443221 2233332233344445555555555654 33 159999999999
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPER 195 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~ 195 (508)
+.+++.++ ..+|+.|+++...++.+... +...|..+..++.+.+... +|.++++ +.
T Consensus 100 l~~~~~~l-~~~gd~vl~~~p~y~~~~~~---~~~~g~~~~~~~~~~~~~~--------------~d~~~l~--~~---- 155 (382)
T d1u08a_ 100 LYAAITAL-VRNGDEVICFDPSYDSYAPA---IALSGGIVKRMALQPPHFR--------------VDWQEFA--AL---- 155 (382)
T ss_dssp HHHHHHHH-CCTTCEEEEEESCCTTHHHH---HHHTTCEEEEEECCTTTCC--------------CCHHHHH--HH----
T ss_pred HHHHHhhc-ccccceEEEecccccchhhh---hhhccccceeccccccccc--------------CCHHHHh--hh----
Confidence 99999999 68899999998777666544 4446888888877654322 2567777 33
Q ss_pred CCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC----CCCCCCC----CCc
Q 010538 196 DPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ----PPDLSKY----PVD 267 (508)
Q Consensus 196 ~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~----~~d~~~~----~~D 267 (508)
..++++++++++++||||++++.+++.++++ ++++++++++.|..+..-.. +...... +.-
T Consensus 156 --~~~~~~~i~l~~P~NPtG~v~~~~~~~~l~~---------~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (382)
T d1u08a_ 156 --LSERTRLVILNTPHNPSATVWQQADFAALWQ---------AIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERA 224 (382)
T ss_dssp --CCTTEEEEEEESSCTTTCCCCCHHHHHHHHH---------HHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTE
T ss_pred --hccCccEEEECCCCcccccccccccchhhhh---------hhccccceeeeecchhhccccccccccccccccccCcE
Confidence 3578999999999999999999998888877 56679999999988764221 1111111 234
Q ss_pred EEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHH
Q 010538 268 FVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNL 345 (508)
Q Consensus 268 ~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~ 345 (508)
+++.|++|.++.| | +||++++++.++.+.... .....+ .+.....++..+++.
T Consensus 225 i~~~s~SK~~~~p-G~RiG~~v~~~~~~~~~~~~~-----------------------~~~~~~-~~~~~q~a~~~~l~~ 279 (382)
T d1u08a_ 225 VAVSSFGKTYHMT-GWKVGYCVAPAPISAEIRKVH-----------------------QYLTFS-VNTPAQLALADMLRA 279 (382)
T ss_dssp EEEEEHHHHTTCG-GGCCEEEECCHHHHHHHHHHH-----------------------HHHTSS-CCHHHHHHHHHHHHH
T ss_pred EEEeeccccccCC-cccchhhhccchhHHHHHhhh-----------------------cccccc-ccccccccccccccc
Confidence 8899999988844 6 899999998877655431 111122 333334444445553
Q ss_pred HHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHH-HHhhC
Q 010538 346 INSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEK-LASLS 424 (508)
Q Consensus 346 ~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~-~L~~~ 424 (508)
- +..+..+++++.+.++.+.+.+... ++.+..|.+ +.++|+++++... .+..++.+ +|+++
T Consensus 280 ~-~~~~~~~~~~~~~~~~~l~~~~~~~-------g~~~~~p~g--------g~~~~~~~~~~~~--~d~~e~~~~ll~e~ 341 (382)
T d1u08a_ 280 E-PEHYLALPDFYRQKRDILVNALNES-------RLEILPCEG--------TYFLLVDYSAVST--LDDVEFCQWLTQEH 341 (382)
T ss_dssp C-THHHHTHHHHHHHHHHHHHHHTTSS-------SCEECCCCB--------SSEEEEECTTTCC--SCHHHHHHHHHHHS
T ss_pred c-hHHHHHHHHHHHhhhhhhhhhhccC-------CcEEecCCc--------eEEEEEecCCCCC--CCHHHHHHHHHHHC
Confidence 2 2236677888888889988888664 688876654 7889999875322 23334554 56889
Q ss_pred CCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhh
Q 010538 425 GIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFD 497 (508)
Q Consensus 425 gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~ 497 (508)
||.+.+|..|.... ...+++|||+. ++.|+++..++.|++
T Consensus 342 gV~v~PG~~F~~~~-------------------------------~~~~~~Ris~~--~~~e~l~~al~RL~~ 381 (382)
T d1u08a_ 342 GVAAIPLSVFCADP-------------------------------FPHKLIRLCFA--KKESTLLAAAERLRQ 381 (382)
T ss_dssp CEECEEGGGGCSSC-------------------------------CCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred CEEEEcchhhCCCC-------------------------------CCCCEEEEEEe--CCHHHHHHHHHHHhC
Confidence 99999997654321 12578999997 478999999888875
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.91 E-value=1.6e-23 Score=218.89 Aligned_cols=251 Identities=14% Similarity=0.032 Sum_probs=165.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA 163 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~ 163 (508)
..+.++++.+|+++|++.. +.+++|+|.++..++.++ .++|++||++..+|.|++.....+...+..+..++.+..
T Consensus 66 ~~i~eae~~~A~~~ga~~a---~f~~~Gtt~~n~a~i~a~-~~~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~~~~~~~~~ 141 (462)
T d1c4ka2 66 GPAVAAEKHAARVYNADKT---YFVLGGSSNANNTVTSAL-VSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNPY 141 (462)
T ss_dssp THHHHHHHHHHHHTTCSEE---EEESSHHHHHHHHHHHHH-CCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEECTT
T ss_pred HHHHHHHHHHHHHhCCCeE---EEECCchHHHHHHHHHHh-cCCCCeEEecccchHHHHHHHHHHhcCCceeeecccccc
Confidence 4578899999999998632 444455565666667777 689999999999999987655544333444444444443
Q ss_pred cCccccccccccccccccchhhhhcCCCCCC---CCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCC
Q 010538 164 VDNDGLSESLVTSTKISLLPIQRRKGASFPE---RDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFS 240 (508)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~---~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~ 240 (508)
+.+... ... ..+.+.++ ..+.+ .....+++..+++.+.+|..|.+.|+++|.++|++
T Consensus 142 g~~~~~-----~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~----------- 201 (462)
T d1c4ka2 142 GFIGGI-----YDS--DFDEKKIR--ELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGH----------- 201 (462)
T ss_dssp CCEEEE-----CGG--GSCHHHHH--HHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGG-----------
T ss_pred cccCCC-----ChH--HhhHHHHH--hhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHHH-----------
Confidence 321000 000 00111111 00000 01235667778888889999999999999999998
Q ss_pred CCCeEEEEeccccCCCCCCCC-------------CCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEE
Q 010538 241 KGRWMVLIDAAKGCVTQPPDL-------------SKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVA 307 (508)
Q Consensus 241 ~~g~~vivD~a~~~g~~~~d~-------------~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~ 307 (508)
+|+++++|++|+.+....+. ...++|++++|+||++|.|.|.+++..++..++..... ...
T Consensus 202 -~g~~l~vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~g~ll~~~~~~~~~~~~~---~~~-- 275 (462)
T d1c4ka2 202 -LCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRY---CDH-- 275 (462)
T ss_dssp -GBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTC---CCH--
T ss_pred -cCCEEEEechhhccccccCcCCcchhhccccccccCCccEEEEecCcccccccceEEEEeccccccccchh---hhH--
Confidence 99999999999887654432 12356999999999999565555555566554321111 100
Q ss_pred ecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhccc
Q 010538 308 ASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLR 373 (508)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~ 373 (508)
... ......+..++++...++++.++..++...+.+++.++..++++++++.+.++.
T Consensus 276 -----~~~----~~~~~~~~t~sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~ 332 (462)
T d1c4ka2 276 -----KHF----NNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAG 332 (462)
T ss_dssp -----HHH----HHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -----HHH----HHhhhhcccCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 000 011344567889999999999999987766667888889999999999998764
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.90 E-value=7.5e-24 Score=220.11 Aligned_cols=339 Identities=11% Similarity=0.041 Sum_probs=221.8
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHH-HHHHhhcC--CCCCCeEEEecccccchHHHHHHHHhcCCeEEEEc
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAAL-KLVGEAFP--WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAID 159 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al-~~~~~~l~--~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~ 159 (508)
..+..++.+++++++|.+... ..++|+|+|++. .+++.++. ..++++||++...|+++...+.+ .|++.+.|+
T Consensus 93 ~~le~~~~~~~~~l~g~~~~~-~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~---~g~~~~~v~ 168 (445)
T d3bc8a1 93 NKITNSLVLNVIKLAGVHSVA-SCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVT---AGFEPVVIE 168 (445)
T ss_dssp HHHHHHHHHHHHHHHTCTTCC-EEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHH---TTCEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCccc-CccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHH---cCCeeEEEE
Confidence 445666888999999997642 677888777544 44444431 34568999999999998877665 488888775
Q ss_pred c---CCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCcccccc
Q 010538 160 V---EEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEI 236 (508)
Q Consensus 160 ~---~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~ 236 (508)
. +..+.+ |+++++ ++|.+. ..++|.+|+++++++++|.+.|+++|.++|++
T Consensus 169 ~~~~~~~~~i---------------d~~~l~--~~i~~~--~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~------- 222 (445)
T d3bc8a1 169 NVLEGDELRT---------------DLKAVE--AKIQEL--GPEHILCLHSTTACFAPRVPDRLEELAVICAN------- 222 (445)
T ss_dssp CEEETTEEEC---------------CHHHHH--HHHHHH--CGGGEEEEEEESSCCTTBCCCCHHHHHHHHHH-------
T ss_pred eeccCccccc---------------CHHHHH--HHHHhc--cccCeEEEEEeCCCCCCeeehhHHHHHHHHHH-------
Confidence 3 334555 678887 555321 24568999999999999999999999999998
Q ss_pred CCCCCCCeEEEEeccccCCCCC------CCCCCCCCcEEEEeccccccCCCcceEEEEechhH-hhhccccccCceEEec
Q 010538 237 SPFSKGRWMVLIDAAKGCVTQP------PDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAA-KLLKNTYFSGGTVAAS 309 (508)
Q Consensus 237 ~~~~~~g~~vivD~a~~~g~~~------~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~-~~l~~~~~g~~~~~~~ 309 (508)
+|+++++|++++.+... .+....++|++++|+||++++|.|.|+++.++... +.+...+.+
T Consensus 223 -----~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~~~~~~~~~------- 290 (445)
T d3bc8a1 223 -----YDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPG------- 290 (445)
T ss_dssp -----HTCCEEEECTTTTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSCS-------
T ss_pred -----hCCcEEEEccchhhhhhccccchhccCcCCcceEEecCccccccCCCCceeeeCChHHHHHHHHHHhh-------
Confidence 99999999999876432 12222358999999999887799999999876543 333322211
Q ss_pred ccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCC
Q 010538 310 IADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTS 389 (508)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~ 389 (508)
+......+.+..++..+...+...+.++..++.+++.+.|.++... -+..+...+.
T Consensus 291 --------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~l~~~---~~~~~l~~~~- 346 (445)
T d3bc8a1 291 --------------------RASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEA---HNERLLQTPH- 346 (445)
T ss_dssp --------------------CBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCCBCCCTT-
T ss_pred --------------------cccCcchHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHhh---cCceeecCCC-
Confidence 1122223445556666666678888888889999999888765210 0233333222
Q ss_pred CcccCCCCceEEEEeeCCCCC-ccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccC
Q 010538 390 EVSYHDTGSMVSFNLKRPDGS-WFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIH 468 (508)
Q Consensus 390 ~~~~~~~~~~v~~~~~~~~~~-~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 468 (508)
.....++.+...... ..+..++...|.+.||.....+.+..... .. ...+..++.+ | .
T Consensus 347 ------~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~--i~----~~~~~~~g~~--~-------~ 405 (445)
T d3bc8a1 347 ------NPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQT--VS----GHTFRGFMSH--A-------D 405 (445)
T ss_dssp ------CSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEEE--ET----TEEEETTTTT--S-------S
T ss_pred ------CCcceEEEeeeccccCCCCHHHHHHHHHHcCCCcceeeccccccc--hh----hhhhhhcCCC--C-------c
Confidence 134444554432211 13345577788888885443332222110 00 0111112111 0 1
Q ss_pred CCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhhhccCC
Q 010538 469 GKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQFLNSK 508 (508)
Q Consensus 469 ~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~~~~~~ 508 (508)
......+|++++.++|+||||++++.|+++++.++....|
T Consensus 406 ~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~~rk~~~k 445 (445)
T d3bc8a1 406 NYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKEQTR 445 (445)
T ss_dssp CCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 1235679999999999999999999999999998765544
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=3.7e-22 Score=203.55 Aligned_cols=342 Identities=12% Similarity=0.014 Sum_probs=216.3
Q ss_pred CCCeeeeCCCCCCC-CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCC--CCCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGATLY-SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA--SMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~--~~~~~~i~~t~g~t~a 115 (508)
.++|.|+-+-...+ |+.+++++ ....... ..|....+..++.+++.+.+.+..|. +++ +|++|+|++++
T Consensus 28 ~~vi~l~~G~p~~~~p~~~~~al-~~~~~~~-----~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~--~I~it~G~~~~ 99 (389)
T d2gb3a1 28 VRIHHLNIGQPDLKTPEVFFERI-YENKPEV-----VYYSHSAGIWELREAFASYYKRRQRVDVKPE--NVLVTNGGSEA 99 (389)
T ss_dssp CEEEECSSCCCCSCCCTHHHHHH-HHTCCSS-----CCCCCTTCCHHHHHHHHHHHHHTSCCCCCGG--GEEEESHHHHH
T ss_pred CCEEECCCCCCCCCCCHHHHHHH-HhcCCCC-----CCCCCCcCCHHHHHHHHHHHHHhcCCCcccc--eEEeccccccc
Confidence 45788876655433 44455554 3332211 22332222334445555555555554 566 89999999999
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPER 195 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~ 195 (508)
+.+++.++ ..+|+.|++....++.+... ++..|..+..++.+.+.... +.+.+.
T Consensus 100 l~~~~~~l-~~~gd~V~i~~P~y~~~~~~---~~~~g~~~~~~~~~~~~~~~--------------~~~~~~-------- 153 (389)
T d2gb3a1 100 ILFSFAVI-ANPGDEILVLEPFYANYNAF---AKIAGVKLIPVTRRMEEGFA--------------IPQNLE-------- 153 (389)
T ss_dssp HHHHHHHH-CCTTCEEEEEESCCTHHHHH---HHHHTCEEEEEECCGGGTSC--------------CCTTGG--------
T ss_pred cccccccc-ccCCCeEEEeCCCCcccccc---ccccCccccccccccccccc--------------hhhhhh--------
Confidence 99999999 68889999888666665544 44458899999887644331 122233
Q ss_pred CCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCC---CCC--CCCCCcEEE
Q 010538 196 DPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQP---PDL--SKYPVDFVV 270 (508)
Q Consensus 196 ~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~---~d~--~~~~~D~~~ 270 (508)
....++++++++++++||||.+++.+++.++++ +|++++++||.|.++..-... ... ...+..+++
T Consensus 154 ~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~---------~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~ 224 (389)
T d2gb3a1 154 SFINERTKGIVLSNPCNPTGVVYGKDEMRYLVE---------IAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVI 224 (389)
T ss_dssp GGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH---------HHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEE
T ss_pred hhcccCccEEEeCCCCccccccchHHHHHHHHh---------hcccCCEEEEEecccccccccccccccccccccccccc
Confidence 223578899999999999999999888887776 566799999999998642111 111 111345788
Q ss_pred EeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHh
Q 010538 271 MSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINS 348 (508)
Q Consensus 271 ~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~ 348 (508)
.|++|.++.| | +||++++++.+........ .....++.....+....+... +
T Consensus 225 ~s~sK~~~~~-GlRiG~~~~~~~~i~~~~~~~~------------------------~~~~~~~~~~~~~~~~~l~~~-~ 278 (389)
T d2gb3a1 225 DSVSKKFSAC-GARVGCLITRNEELISHAMKLA------------------------QGRLAPPLLEQIGSVGLLNLD-D 278 (389)
T ss_dssp EESTTTTTCG-GGCCEEEECSCHHHHHHHHHHH------------------------HHSCCCCHHHHHHHHHHHTCC-H
T ss_pred ccccccccCc-ccceeeeeccchhHHHHHhhhh------------------------hcccccccccccccccccccc-c
Confidence 8999988845 7 8999998765433221110 111223333333333333321 2
Q ss_pred cChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHH-hh----
Q 010538 349 LTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLA-SL---- 423 (508)
Q Consensus 349 ~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L-~~---- 423 (508)
..++.+++++++.++++.+.|+++. ......|.+ +.++|++++..++ .++.+.| ++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~L~~~~------~~~~~~p~~--------g~~~~~~lp~~~~-----~~~~~~ll~e~~l~ 339 (389)
T d2gb3a1 279 SFFDFVRETYRERVETVLKKLEEHG------LKRFTKPSG--------AFYITAELPVEDA-----EEFARWMLTDFNMD 339 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT------CCCBCCCSB--------SSEEEEECSSSCH-----HHHHHHHHHSCCBT
T ss_pred hhcccccccccccchhhhhhhhhhc------cccccCCCc--------eEEEEEeCCCCCH-----HHHHHHHHHhhhhh
Confidence 2367788889999999999999872 333333333 7899999876533 2345444 43
Q ss_pred -CCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 424 -SGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 424 -~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
+||.+.+|..|.... +...+++|||+. .+.+++++.++.|++.++
T Consensus 340 ~~~v~v~pg~~f~~~~------------------------------~~~~~~iRis~~--~~~~~l~~a~~~L~~~lk 385 (389)
T d2gb3a1 340 GETTMVAPLRGFYLTP------------------------------GLGKKEIRIACV--LEKDLLSRAIDVLMEGLK 385 (389)
T ss_dssp TEEEECEEGGGGCSST------------------------------TTTSSEEEEECC--SCHHHHHHHHHHHHHHHH
T ss_pred hCCEEEEeCcccccCC------------------------------CCCCCEEEEEEc--CCHHHHHHHHHHHHHHHH
Confidence 467777776443211 123689999986 578888887777766553
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.89 E-value=1.4e-21 Score=192.80 Aligned_cols=329 Identities=12% Similarity=-0.012 Sum_probs=209.9
Q ss_pred eeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhh
Q 010538 43 YLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEA 122 (508)
Q Consensus 43 yld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~ 122 (508)
-|.+.-+++++|.+++++.+... . +..++......+++|+.+|+++|.+. +++||+|+|+|++.++.+
T Consensus 6 ~f~s~n~~g~~P~v~~A~~~a~~-------~--~~~~~~~~~~~~~l~~~la~~~g~~~---~v~f~~sGt~An~~a~~~ 73 (345)
T d1v72a1 6 GFSSDNIAGASPEVAQALVKHSS-------G--QAGPYGTDELTAQVKRKFCEIFERDV---EVFLVPTGTAANALCLSA 73 (345)
T ss_dssp BCSCGGGCCCCHHHHHHHHHTTS-------S--CCCSTTCSHHHHHHHHHHHHHHTSCC---EEEEESCHHHHHHHHHHT
T ss_pred CcCCCCCCCCCHHHHHHHHHHhc-------c--CccccCCCHHHHHHHHHHHHHHCCCc---EEEECCchHHHHHHHHHH
Confidence 34444455679999998765321 1 11122345678899999999999864 599999999999999998
Q ss_pred cCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCc
Q 010538 123 FPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAY 202 (508)
Q Consensus 123 l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t 202 (508)
+ ...++.+++....|++...........+..+..++.+..+.. +++.++ ..+.+.......+
T Consensus 74 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~--~~~~~~~~~~~~~ 135 (345)
T d1v72a1 74 M-TPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKL---------------DIVRLR--ERTREKVGDVHTT 135 (345)
T ss_dssp S-CCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCGGGCC---------------CHHHHH--HHTTSSTTCTTSC
T ss_pred H-HhcCCccccccccceeeechhhHHHhcCcccccccccccccc---------------cHHHhh--hhhcccccccccc
Confidence 8 567778888888888776655555556777887776665554 456665 4443322211222
Q ss_pred -eEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCC---CC----CCCCCcEEEEecc
Q 010538 203 -NLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPP---DL----SKYPVDFVVMSFY 274 (508)
Q Consensus 203 -~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~---d~----~~~~~D~~~~S~~ 274 (508)
..++.....++.|...+++.+.+++. +|+++|+++++|+++..+.... ++ .....+.++.+.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~i~~---------~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (345)
T d1v72a1 136 QPACVSITQATEVGSIYTLDEIEAIGD---------VCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGAT 206 (345)
T ss_dssp EEEEEEEESSCTTSCCCCHHHHHHHHH---------HHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCG
T ss_pred cceeeeeeccccccccccchhhhhHHH---------HHHhcCceeeecccccceeccccccCHHHhhccccccccccCcc
Confidence 23334445666777766665555433 3334999999999986422211 11 1123456666666
Q ss_pred ccccCCCcceEEEEechh-HhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHH
Q 010538 275 KIFGYPTGLGALIMRNDA-AKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPA 353 (508)
Q Consensus 275 K~~g~P~G~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~ 353 (508)
|..+ + +.|..+..... ...... ......++.+. ...+..++...+.......
T Consensus 207 ~~~~-~-~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~-~~~aa~~~~~~~~~~~~~~ 259 (345)
T d1v72a1 207 KNGV-L-AAEAIVLFNTSLATEMSY------------------------RRKRAGHLSSK-MRFLSAQIDAYLTDDLWLR 259 (345)
T ss_dssp GGTC-S-SCEEEEESSGGGHHHHHH------------------------HHHHTTCCCSS-THHHHHHHHHHTSTTHHHH
T ss_pred cccc-c-cccccccchhhhhhhccc------------------------cccccccccch-hhHHhhhhHHHHHHhhhhh
Confidence 6444 3 23444433322 111110 11111222222 2333344445445555677
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCC
Q 010538 354 ICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCF 433 (508)
Q Consensus 354 i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~ 433 (508)
...+..++.+++.+.+.++ +++.+..|.. ++++++.+++ .+.+.|.++||.+..+.
T Consensus 260 ~~~~~~~~~~~~~~~l~~~------~g~~~~~p~~--------~niv~~~~~~---------~~~~~L~~~gi~v~~~~- 315 (345)
T d1v72a1 260 NARKANAAAQRLAQGLEGL------GGVEVLGGTE--------ANILFCRLDS---------AMIDALLKAGFGFYHDR- 315 (345)
T ss_dssp HHHHHHHHHHHHHHHHTTC------TTEEEESCCC--------SSEEEEEECH---------HHHHHHHHTTCBCBCSS-
T ss_pred hccchhhHHHHHHHHHHhc------CCcEeccCCC--------ccEEEEEcCH---------HHHHHHHHcCCCccccC-
Confidence 8888889999999999988 4788887754 7899988853 26778888999876532
Q ss_pred CCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhh
Q 010538 434 CNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFD 497 (508)
Q Consensus 434 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~ 497 (508)
..++.+||+++.+||+||||++++.|+.
T Consensus 316 ------------------------------------~~~~~lR~~~~~~~T~edid~~le~lr~ 343 (345)
T d1v72a1 316 ------------------------------------WGPNVVRFVTSFATTAEDVDHLLNQVRL 343 (345)
T ss_dssp ------------------------------------SSTTEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred ------------------------------------CCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 1267899999999999999999999875
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.89 E-value=2.5e-23 Score=215.49 Aligned_cols=312 Identities=12% Similarity=0.013 Sum_probs=214.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcC-CCCCCeEEEecccccchHHHHHHHHhcCCeEEEEcc--
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFP-WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDV-- 160 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~-~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~-- 160 (508)
.+..+...++++++|.+.. ...+..|+++++.+++.+.. ..++++|+++...|+++...+.+ .|.+++.|+.
T Consensus 113 ~~~~~~~~~~~~~~g~~~~--~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~~---~g~~~~~v~~~~ 187 (434)
T d2z67a1 113 ALTNKILESFFKQLGLNVH--AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSF---VGMNMRLVETVL 187 (434)
T ss_dssp HHHHHHHHHHHHHTTCCCE--EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHH---TTCEEEEECCEE
T ss_pred HHHHHHHHHHHHhcCCCcc--eeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHHHH---hCCcceEEEeec
Confidence 3444566778899998876 45555666666666666653 33678999999999998776554 5888887764
Q ss_pred -CCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCC
Q 010538 161 -EEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPF 239 (508)
Q Consensus 161 -~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~ 239 (508)
+..+.+ |+++++ ++|++. ...+++.+|+++++++++|.+.|+++|.++|++
T Consensus 188 ~~~~~~~---------------d~~~l~--~~i~~~-~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~---------- 239 (434)
T d2z67a1 188 DGDRVYV---------------PVEDIE--NAIKKE-IELGNRPCVLSTLTFFPPRNSDDIVEIAKICEN---------- 239 (434)
T ss_dssp ETTEEEC---------------CHHHHH--HHHHHH-HHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHH----------
T ss_pred CCCccCC---------------CHHHHH--HHHHhh-hhcCCceEEEeccCcCCCccccCHHHHHHHHHH----------
Confidence 223444 678887 665321 112467889999999999999999999999998
Q ss_pred CCCCeEEEEeccccCCCC-----CCCCCCCCCcEEEEeccccccCCCcceEEEEechh-HhhhccccccCceEEecccch
Q 010538 240 SKGRWMVLIDAAKGCVTQ-----PPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDA-AKLLKNTYFSGGTVAASIADI 313 (508)
Q Consensus 240 ~~~g~~vivD~a~~~g~~-----~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~~~ 313 (508)
+|++++||++++.+.. +......++|++++|+||++++|.|.|+++.+++. ++++.+.+
T Consensus 240 --~~~~l~vD~a~g~~~~~~~~~~~~~~~~~~D~~~~s~hK~l~~~~g~~~~~~~~~~~~~~~~~~~------------- 304 (434)
T d2z67a1 240 --YDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSY------------- 304 (434)
T ss_dssp --HTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTS-------------
T ss_pred --hCCeEEEeccchhhhhhccccccccccCCcceEEEcCccccccCCCccccccCcHHHHHHHHhhc-------------
Confidence 9999999999976442 22234558999999999988879999999887653 33333332
Q ss_pred hhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCccc
Q 010538 314 DFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSY 393 (508)
Q Consensus 314 ~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~ 393 (508)
.++.+......+.+++..+...|+..+.++..++++++.+.|+++.. ..+.++..++.
T Consensus 305 --------------~~~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~~~a~~l~~~L~~l~~---~~g~~ll~~~~----- 362 (434)
T d2z67a1 305 --------------PGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSK---KTGGKFLDVES----- 362 (434)
T ss_dssp --------------CSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HSSCCBCCCCC-----
T ss_pred --------------ccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhh---hcCceecCCCC-----
Confidence 12223334555666777777778899999999999999999887521 01344443322
Q ss_pred CCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCc
Q 010538 394 HDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTG 473 (508)
Q Consensus 394 ~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (508)
...+.+.. +. +..++...|.+.||............++... +....+
T Consensus 363 ---~~~~~~~~-~~-----~~~~l~~~L~~~gI~g~~v~~~l~~~g~~~~------------------------~~~~~~ 409 (434)
T d2z67a1 363 ---PIASCISV-NS-----DPVEIAAKLYNLRVTGPRGIKKTDHFGNCYL------------------------GTYTHD 409 (434)
T ss_dssp ---SSEEEEEC-SS-----CHHHHHHHHHHTTEESCEEECTTCHHHHTCS------------------------SCCSCC
T ss_pred ---Cceeeeec-CC-----CHHHHHHHHHHcCCeeeehhhhccccCeeee------------------------cccCCC
Confidence 23333333 22 3445888899999975433322222221111 112368
Q ss_pred eEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 474 AIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 474 ~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
++|++++.++|.||||++++.|+++
T Consensus 410 ~l~~~~s~~~T~edID~~i~~L~kI 434 (434)
T d2z67a1 410 YIVMNAAIGVRTEDIVNSVSKLEKI 434 (434)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred eEEEecCCCCCHHHHHHHHHHHhcC
Confidence 8999999999999999999998864
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.86 E-value=4.3e-21 Score=187.10 Aligned_cols=323 Identities=8% Similarity=-0.048 Sum_probs=194.6
Q ss_pred CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCe
Q 010538 51 LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSS 130 (508)
Q Consensus 51 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~ 130 (508)
.++|.+++++.+..... ..++......+++|+.+|+++|++++ +|+||+|+|+|+++++.++ ..+++.
T Consensus 11 g~~P~v~eAl~~~~~~~---------~~~y~~~~~~~~lr~~ia~~~g~~~~--~v~~tsggtean~~a~~~~-~~~~~~ 78 (340)
T d1svva_ 11 GMHPKILDLMARDNMTQ---------HAGYGQDSHCAKAARLIGELLERPDA--DVHFISGGTQTNLIACSLA-LRPWEA 78 (340)
T ss_dssp CCCHHHHHHHHHHTTCC---------CCSTTCSHHHHHHHHHHHHHHTCTTS--EEEEESCHHHHHHHHHHHH-CCTTEE
T ss_pred CCCHHHHHHHHHHhhcC---------CCCCCCCHHHHHHHHHHHHHhCCCcc--eEEEcCCHHHHHHHHHHHH-hhhccc
Confidence 35899999987643221 11122356678899999999999988 8999999999999999988 577788
Q ss_pred EEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCC
Q 010538 131 YMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSE 210 (508)
Q Consensus 131 vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~ 210 (508)
++.....|.++.............+...+.......+. ..+... ... ....+.+.++.++ .
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~--~~~---~~~~~~~~~~~~~-~ 139 (340)
T d1svva_ 79 VIATQLGHISTHETGAIEATGHKVVTAPCPDGKLRVAD-------------IESALH--ENR---SEHMVIPKLVYIS-N 139 (340)
T ss_dssp EEEETTSHHHHSSTTHHHHTTCCEEEECCTTSCCCHHH-------------HHHHHH--HSC---STTSCEEEEEEEE-S
T ss_pred cccccccceeeeecccccccceeeeecccccccccchh-------------HHHHhh--hhh---cccCCcceeeeec-c
Confidence 88887777766544343333333333333222111100 011111 110 1123344444444 4
Q ss_pred CCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCC-------CCcEEEEeccccccCCCcc
Q 010538 211 CNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKY-------PVDFVVMSFYKIFGYPTGL 283 (508)
Q Consensus 211 ~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~-------~~D~~~~S~~K~~g~P~G~ 283 (508)
.+..|.+.+.+++..++. .|.++|+++++|+++..+..+.+.... ..+....++.|..+.+ +.
T Consensus 140 ~~~~~~~~~~~~~~~~~~---------~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 209 (340)
T d1svva_ 140 TTEVGTQYTKQELEDISA---------SCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMF-GE 209 (340)
T ss_dssp SCTTSCCCCHHHHHHHHH---------HHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSS-CE
T ss_pred cccccccccHHHhhhhhc---------ccccccceeeeeccceeeeecccccccccccccccceeeecCCccccccc-cc
Confidence 566777777666554433 233389999999998765554444333 2346667777755523 33
Q ss_pred eEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 010538 284 GALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGM 363 (508)
Q Consensus 284 G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~ 363 (508)
++............+. .....++.+.. ..+..+++.++...+.....++...+++
T Consensus 210 ~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~-~~~~aa~~~~~~~~~~~~~~~~~~~~~~ 264 (340)
T d1svva_ 210 ALIILNDALKPNARHL------------------------IKQRGALMAKG-WLLGIQFEVLMKDNLFFELGAHSNKMAA 264 (340)
T ss_dssp EEEECSGGGCTTHHHH------------------------HHHTTCCCTTT-HHHHHHHHHHTSTTHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhhhh------------------------cccccCccchh-hHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 4444333322111111 11112222222 2233344445555566778889999999
Q ss_pred HHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhc
Q 010538 364 YVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYL 443 (508)
Q Consensus 364 ~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~ 443 (508)
++.+.++.. |++++.|.. ++++++.+++. ....|.++++...... ..
T Consensus 265 ~~~~~l~~~-------g~~~~~p~~--------~~~v~~~~~~~---------~~~~l~~~~~~~~~~~---~~------ 311 (340)
T d1svva_ 265 ILKAGLEAC-------GIRLAWPSA--------SNQLFPILENT---------MIAELNNDFDMYTVEP---LK------ 311 (340)
T ss_dssp HHHHHHHHT-------TCCBSSCCS--------SSEECBEEEHH---------HHHHHTTTEECEEEEE---ET------
T ss_pred hhHHHHhcC-------CCeeecCCC--------ceEEEEeCCHH---------HHHHHHHhhhhhcccc---cC------
Confidence 999999886 688777654 68888887652 4555655554432211 00
Q ss_pred CCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 444 GLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 444 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
..++.+|+|+++++|+||||+++++|+++
T Consensus 312 --------------------------~~~~~vR~s~~~~~t~edid~~l~~l~~l 340 (340)
T d1svva_ 312 --------------------------DGTCIMRLCTSWATEEKECHRFVEVLKRL 340 (340)
T ss_dssp --------------------------TTEEEEEEECCTTCCHHHHHHHHHHHHHC
T ss_pred --------------------------CCCcEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 12688999999999999999999998863
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=6.9e-21 Score=191.07 Aligned_cols=348 Identities=15% Similarity=0.079 Sum_probs=247.3
Q ss_pred CCeeeeCCCCCCCCHHHHHHHHHHhhcccc--CCCCCccchhhhhhHHHHH-HHHHHHHHcCCCCCCceEEEcCChHHHH
Q 010538 40 GTVYLDHAGATLYSELQMEAIFRDFTTNVY--GNPHSQSDISLATCDIVRA-AREQVLDYFNASMKDYKCIFTSGATAAL 116 (508)
Q Consensus 40 ~~iyld~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~r~~la~~~~~~~~~~~i~~t~g~t~al 116 (508)
+.+-|- ++...+++.+++++-. .+.+.| +.|+..|+.|.+..+.++. +.+.+.++||+... +|-. .|++.|+
T Consensus 27 ~~i~Li-aSEN~~S~~v~~a~~S-~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a~~a--nVqp-~SGs~AN 101 (416)
T d1dfoa_ 27 EHIELI-ASENYTSPRVMQAQGS-QLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYA--NVQP-HSGSQAN 101 (416)
T ss_dssp HSEECC-TTCCCCCHHHHHHHTS-GGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE--ECCC-SSHHHHH
T ss_pred cCceEe-cCcccCCHHHHHHhcC-cccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhCCCcc--eeec-ccCccHH
Confidence 344443 6677778888887644 444554 4677777777766666665 77888899999765 4444 5666799
Q ss_pred HHHHhhcCCCCCCeEEEecccccchHHHHHH--HHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCC
Q 010538 117 KLVGEAFPWSHQSSYMYTMENHNSVLGIREY--ALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 117 ~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~--~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
..++.++ .++||+|+..+..|.+.+.--.. ......+....+++.++.+ |.++++ +.++
T Consensus 102 ~av~~Al-l~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~I---------------Dyd~l~--~~a~- 162 (416)
T d1dfoa_ 102 FAVYTAL-LEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHI---------------DYADLE--KQAK- 162 (416)
T ss_dssp HHHHHHH-CCTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCSSSSB---------------CHHHHH--HHHH-
T ss_pred HHHHHHh-cCCCCeeeeccccccccccccccccccCceEEEEecccCCccCc---------------cHHHHH--HHHH-
Confidence 9999999 79999999998887665431111 1111356666666665555 577776 3332
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC-----CCCCCCCCCCCCcEE
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC-----VTQPPDLSKYPVDFV 269 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~-----g~~~~d~~~~~~D~~ 269 (508)
..++++|++.. +.....+|.+++.++|++ .|+++++|.+|.. |..|-++.. +|++
T Consensus 163 ----~~kPklIi~G~--S~y~r~~d~~~~reiad~------------vga~l~~D~aH~~GLIa~g~~~sP~~~--aDvv 222 (416)
T d1dfoa_ 163 ----EHKPKMIIGGF--SAYSGVVDWAKMREIADS------------IGAYLFVDMAHVAGLVAAGVYPNPVPH--AHVV 222 (416)
T ss_dssp ----HHCCSEEEEEC--SSCCSCCCHHHHHHHHHH------------TTCEEEEECTTTHHHHHHTSSCCCTTT--SSEE
T ss_pred ----HhccceEEecc--cccccccCHHHHHHHHHh------------cCceEEcchhhhhcceeccccCCcccc--ccee
Confidence 35678888764 446789999999999998 8999999999975 455555554 7999
Q ss_pred EEeccccccCCCcceEEEEe---chhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHH
Q 010538 270 VMSFYKIFGYPTGLGALIMR---NDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLI 346 (508)
Q Consensus 270 ~~S~~K~~g~P~G~G~l~~~---~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~ 346 (508)
++|+||+|.||+| |+++.+ ++..+++...++.+.+ |.|....+++...+++..
T Consensus 223 t~tThKtlrGPrg-giI~~~~~~~~~~~~i~~avfPg~q-----------------------ggp~~~~iaa~Aval~Ea 278 (416)
T d1dfoa_ 223 TTTTHKTLAGPRG-GLILAKGGSEELYKKLNSAVFPGGQ-----------------------GGPLMHVIAGKAVALKEA 278 (416)
T ss_dssp EEESSSTTCCCSC-EEEEESSCCHHHHHHHHHHHTTTTC-----------------------SSCCHHHHHHHHHHHHHT
T ss_pred eeehhhcccCCCc-eEEEeccchHhHHHHHHhhhCcccc-----------------------cCccHHHHHHHHHHHHHH
Confidence 9999998888987 888886 3555555544443321 456678899988898875
Q ss_pred HhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCC
Q 010538 347 NSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGI 426 (508)
Q Consensus 347 ~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI 426 (508)
.+...+...+++.++++.|.+.|.+. |++++...+. .+++.+++.+.. ++...+.+.|++.||
T Consensus 279 ~~~~fk~Y~~qvv~NA~~La~~L~~~-------G~~iv~ggTd-------nHlvlvdl~~~~---~~G~~a~~~Le~~gI 341 (416)
T d1dfoa_ 279 MEPEFKTYQQQVAKNAKAMVEVFLER-------GYKVVSGGTD-------NHLFLVDLVDKN---LTGKEADAALGRANI 341 (416)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHT-------TCEEGGGSCS-------SSEEEEECGGGT---CCHHHHHHHHHHTTE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhC-------CcccccCCCC-------CceeEEEecccC---CCHHHHHHHHHHcCe
Confidence 55457899999999999999999987 8999876544 788888885421 455679999999999
Q ss_pred eeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC----CCHHHHHHHHHhhhhhhhh
Q 010538 427 QLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM----STFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 427 ~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~----~t~eev~~l~~~~~~~~~~ 501 (508)
.+.--.... |+++ ...++.|||+.... -.++|++.+.++|.+.++-
T Consensus 342 ~~Nkn~iP~--------------------------d~~~---~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~~ 391 (416)
T d1dfoa_ 342 TVNKNSVPN--------------------------DPKS---PFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDS 391 (416)
T ss_dssp ECEECCCTT--------------------------CSSC---TTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEeCCcCCC--------------------------CCCC---CCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 975322111 1110 11367899997644 3789999999888877643
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.85 E-value=1.2e-20 Score=188.34 Aligned_cols=346 Identities=17% Similarity=0.114 Sum_probs=248.4
Q ss_pred CCeeeeCCCCCCCCHHHHHHHHHHhhcccc--CCCCCccchhhhhhHHHHH-HHHHHHHHcCCCCCCceEEEcCChHHHH
Q 010538 40 GTVYLDHAGATLYSELQMEAIFRDFTTNVY--GNPHSQSDISLATCDIVRA-AREQVLDYFNASMKDYKCIFTSGATAAL 116 (508)
Q Consensus 40 ~~iyld~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~r~~la~~~~~~~~~~~i~~t~g~t~al 116 (508)
+.+-|- ++...++|.+.++.-. .+.+.| +.|+..|+.|....+.+|. +.+.+.++||+... +|-. .|++.|+
T Consensus 24 ~~l~Li-aSEN~~S~~v~~a~~S-~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~a~~a--nVqp-~SGs~An 98 (405)
T d1kl1a_ 24 AKIELI-ASENFVSRAVMEAQGS-VLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHA--NVQP-HSGAQAN 98 (405)
T ss_dssp HSEECC-TTCCCCCHHHHHHHTS-GGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHCCSEE--ECCC-SSHHHHH
T ss_pred cCceEe-ccCCcCCHHHHHHhcC-cccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCcc--eeec-cCchHHH
Confidence 344443 6677778888887644 444544 4677777777766676665 77888999999765 4443 4666699
Q ss_pred HHHHhhcCCCCCCeEEEecccccchHH---HHHHHHhcCCeEEEEccCCc-cCccccccccccccccccchhhhhcCCCC
Q 010538 117 KLVGEAFPWSHQSSYMYTMENHNSVLG---IREYALSQGAAAFAIDVEEA-VDNDGLSESLVTSTKISLLPIQRRKGASF 192 (508)
Q Consensus 117 ~~~~~~l~~~~g~~vl~~~~~h~s~~~---~~~~~~~~G~~v~~v~~~~~-~~~~~l~~~~~~~~~~~~d~~~l~~~~~l 192 (508)
..++.++ .++||+|+..+..+.+.+. ..... ....++...+++.+ ..+ |.++++ +.+
T Consensus 99 ~av~~al-l~pGD~im~l~l~~GGHlshg~~~~~~-g~~~~~~~y~~d~~~~~I---------------D~d~l~--~~a 159 (405)
T d1kl1a_ 99 MAVYFTV-LEHGDTVLGMNLSHGGHLTHGSPVNFS-GVQYNFVAYGVDPETHVI---------------DYDDVR--EKA 159 (405)
T ss_dssp HHHHHHH-CCTTCEEEEECGGGTCCGGGTCTTSHH-HHHSEEEEECBCTTTCSB---------------CHHHHH--HHH
T ss_pred HHHHHHh-cCCCCEEEEeecccccccccCcccccc-ceEEEEEEeccchhcccc---------------cHHHHH--HHH
Confidence 9999999 7999999998755544321 11111 12367777788753 445 577777 433
Q ss_pred CCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC-----CCCCCCCCCCCCc
Q 010538 193 PERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC-----VTQPPDLSKYPVD 267 (508)
Q Consensus 193 ~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~-----g~~~~d~~~~~~D 267 (508)
+ ..++++|++..-. .-..+|.+++.++|++ .|+++++|.+|.. |..|-++. .+|
T Consensus 160 ~-----~~kPklIi~G~S~--y~r~~d~~~~reIad~------------vga~l~~D~aH~~GLIa~g~~~~P~~--~aD 218 (405)
T d1kl1a_ 160 R-----LHRPKLIVAAASA--YPRIIDFAKFREIADE------------VGAYLMVDMAHIAGLVAAGLHPNPVP--YAH 218 (405)
T ss_dssp H-----HHCCSEEEECCSS--CCSCCCHHHHHHHHHH------------HTCEEEEECTTTHHHHHTTSSCCSTT--TCS
T ss_pred H-----hhCcceEEecccc--cccccChHHHHHHHhh------------hCCEEecchhhHhhhhhhhhcCChhh--hhh
Confidence 2 3467888876533 4567899999999998 8999999999964 55555554 489
Q ss_pred EEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH
Q 010538 268 FVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN 347 (508)
Q Consensus 268 ~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~ 347 (508)
++++|+||+|.||+| |+++.+++..+++...++.+.+ |.|....++++..++....
T Consensus 219 vvt~tThKtlrGPrg-g~I~~~~~~~~~i~~avfPg~q-----------------------ggp~~~~iAa~Aval~Ea~ 274 (405)
T d1kl1a_ 219 FVTTTTHKTLRGPRG-GMILCQEQFAKQIDKAIFPGIQ-----------------------GGPLMHVIAAKAVAFGEAL 274 (405)
T ss_dssp EEEEESSSTTCCCSC-EEEEECHHHHHHHHHHHTTTTC-----------------------SSCCHHHHHHHHHHHHHHH
T ss_pred heeccccccccCCCC-ceEEecchhHHHHHhhhCcccc-----------------------cCcchhHHHHHHHHHHHHh
Confidence 999999999888997 9999998888777766554432 5677788999999988755
Q ss_pred hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCe
Q 010538 348 SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQ 427 (508)
Q Consensus 348 ~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~ 427 (508)
+...+...+++.+.++.|.+.|.+. |+++++..+. .+++++++.... ++.....+.|++.||.
T Consensus 275 ~~~fk~Ya~qvv~NAkaLa~~L~~~-------G~~vv~ggTd-------~H~vlvdl~~~~---~~g~~ae~~Le~agI~ 337 (405)
T d1kl1a_ 275 QDDFKAYAKRVVDNAKRLASALQNE-------GFTLVSGGTD-------NHLLLVDLRPQQ---LTGKTAEKVLDEVGIT 337 (405)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHT-------TCEEGGGSCS-------SSEEEEECGGGT---CCHHHHHHHHHHHTEE
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhcC-------CceeecCCCc-------cceeeccccccC---CcHHHHHHHHHHcCeE
Confidence 5457889999999999999999986 8999875544 789988885422 3445678899999998
Q ss_pred eccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC----CCHHHHHHHHHhhhhhhh
Q 010538 428 LRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM----STFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 428 v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~----~t~eev~~l~~~~~~~~~ 500 (508)
+.--..+. |+.+ ...+..|||+.... -+++|+.++.++|.+.++
T Consensus 338 ~Nkn~iP~--------------------------d~~~---~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~ 385 (405)
T d1kl1a_ 338 VNKNTIPY--------------------------DPES---PFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLK 385 (405)
T ss_dssp CEECCCTT--------------------------CSSC---TTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred EcCCcCCC--------------------------CCCC---CCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 75322111 1110 11257899997644 478999999999888774
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.84 E-value=6.4e-20 Score=185.58 Aligned_cols=338 Identities=12% Similarity=0.040 Sum_probs=208.1
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc-
Q 010538 85 IVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA- 163 (508)
Q Consensus 85 ~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~- 163 (508)
.+++.++.+|+++|.+ .+++++|+|.|+.+++.++.+++|++|+++...|++....+.. .|.+++.++++.+
T Consensus 32 ~v~~~E~~la~~~g~~----~ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~~~~~~~ai~~---~g~~pv~~d~~~~~ 104 (376)
T d1mdoa_ 32 KNQELEAAFCRLTGNQ----YAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIVL---LGANPVMVDVDRDT 104 (376)
T ss_dssp HHHHHHHHHHHHHCCS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHH---TTCEEEEECBCTTT
T ss_pred HHHHHHHHHHHHHCcC----eEEEeCCHHHHHHHHHHHhCCCCCCEEEEecccccccccchhc---cccceeeecccccc
Confidence 4678899999999986 4577888899999999999889999999999999887766554 4999999998763
Q ss_pred cCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCC
Q 010538 164 VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGR 243 (508)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g 243 (508)
..+ |+++++ +++ +++|++|+++| ..|...|+++|.++|++ +|
T Consensus 105 ~~~---------------d~~~l~--~~i------~~~tkaIi~~h---~~G~~~~~~~i~~i~~~------------~~ 146 (376)
T d1mdoa_ 105 LMV---------------TPEHIE--AAI------TPQTKAIIPVH---YAGAPADLDAIYALGER------------YG 146 (376)
T ss_dssp CCB---------------CHHHHH--HHC------CTTEEEECCBC---GGGCCCCHHHHHHHHHH------------HT
T ss_pred cCC---------------CHHHHH--Hhc------CCCCeEEEEeC---CCCCccchhHHHHHHHh------------cC
Confidence 344 688998 444 67899998876 47999999999999998 99
Q ss_pred eEEEEeccccCCCCCCC--CCCCCCcEEEEeccccccCCCcceEEEEechhH-hhhccccccCceEEecccchhhhhhcc
Q 010538 244 WMVLIDAAKGCVTQPPD--LSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAA-KLLKNTYFSGGTVAASIADIDFVKRRQ 320 (508)
Q Consensus 244 ~~vivD~a~~~g~~~~d--~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~-~~l~~~~~g~~~~~~~~~~~~~~~~~~ 320 (508)
++||+|++|++|...-+ ....+..++.++.+|.++.+.| |+++.+++.+ ++++.....|.............
T Consensus 147 i~vIeD~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l~~g~G-G~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~---- 221 (376)
T d1mdoa_ 147 IPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIKNITCAEG-GIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGR---- 221 (376)
T ss_dssp CCBCEECTTCTTCEETTEETTSSSEEEEECCTTSSSCSSSC-EEEEESCHHHHHHHHHHTBTTEECC-------------
T ss_pred ceEEeccchhccCeeCCeecccccCccccCCCcCCCCCCCC-CEEEEechhHHHHHHhhcccCCcccccccccccc----
Confidence 99999999999865433 3333444555556698874544 7777776543 33443322221100000000000
Q ss_pred CccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceE
Q 010538 321 GVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMV 400 (508)
Q Consensus 321 ~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 400 (508)
.....+.....|.. +-.+.+++...+-..++.+.++.+++++++.+.|+++. .+.+....... .......
T Consensus 222 ~~~~~~~~~g~n~~-~~~~~Aai~~~qL~~~~~~~~~r~~~~~~~~~~L~~~~------~~~~~~~~~~~---~~~~~~~ 291 (376)
T d1mdoa_ 222 APQAEVLAPGYKYN-LPDLNAAIALAQLQKLDALNARRAAIAAQYHQAMADLP------FQPLSLPSWEH---IHAWHLF 291 (376)
T ss_dssp --CCEESSCCCBCC-CCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTSS------CEECCCCSSCE---ECCCSCE
T ss_pred cccccchhcccccc-cchhhhhhhhhhhhhhhHHHHHHhhhhhhhhhhccccc------ccccccccccc---ccccccc
Confidence 00001111111110 00111222222222467788888999999999999873 45444333211 0112223
Q ss_pred EEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcC--CChhhhhhhhhcCCccCCCccccCCCCCceEEEe
Q 010538 401 SFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLG--LSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVS 478 (508)
Q Consensus 401 ~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis 478 (508)
.+.++... ...+..++.+.|.++||.++.... +...++++. .+...+..+- ......+.+-
T Consensus 292 ~~~~~~~~-~~~~Rd~l~~~L~~~gI~~~~~y~--~~~~~~~~~~~~~~~~~p~a~--------------~~~~~~i~LP 354 (376)
T d1mdoa_ 292 IIRVDEAR-CGITRDALMASLKTKGIGTGLHFR--AAHTQKYYRERFPTLTLPDTE--------------WNSERICSLP 354 (376)
T ss_dssp EEECCHHH-HSSCHHHHHHHHHHTTBCCBCCCC--CGGGSHHHHHHSTTCCCHHHH--------------HHHTTEEEEC
T ss_pred cccccccc-chhhHHHHHHHHHHCCCCeeeECc--chhcCHHHHhhCCCCCCHHHH--------------HHHhCEEEcc
Confidence 33332110 012234588999999999876432 111011100 0000000000 0125679999
Q ss_pred cCCCCCHHHHHHHHHhhhhhh
Q 010538 479 FGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 479 ~~~~~t~eev~~l~~~~~~~~ 499 (508)
+|...|.+||+++++.|++|+
T Consensus 355 ~~~~lt~~ei~~I~~~i~~i~ 375 (376)
T d1mdoa_ 355 LFPDMTESDFDRVITALHQIA 375 (376)
T ss_dssp CCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999886
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=6.9e-20 Score=180.66 Aligned_cols=334 Identities=11% Similarity=0.001 Sum_probs=204.7
Q ss_pred eeeeCCCCCCCCHHHHHHHHHHhhccccCCCCC-ccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHH
Q 010538 42 VYLDHAGATLYSELQMEAIFRDFTTNVYGNPHS-QSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVG 120 (508)
Q Consensus 42 iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~ 120 (508)
|-|-.-+.|.|+|.+++|+.+. +.+. .|.. .....++++.+|+++|.+ .+++++|+|+|+.+++
T Consensus 2 ~~~~~~~~t~p~p~v~~A~~~a-------~~g~~~yg~----~p~~~~le~~lA~~~G~~----~~~~~~sGt~A~~~al 66 (343)
T d1m6sa_ 2 IDLRSDTVTKPTEEMRKAMAQA-------EVGDDVYGE----DPTINELERLAAETFGKE----AALFVPSGTMGNQVSI 66 (343)
T ss_dssp EECSCGGGCCCCHHHHHHHHTC-------CCCCGGGTC----CHHHHHHHHHHHHHTTCS----EEEEESCHHHHHHHHH
T ss_pred cccccccCCCCCHHHHHHHHhh-------hcCCcccCC----CHHHHHHHHHHHHHHCCC----eEEEeCCHHHHHHHHH
Confidence 3443344566789998887442 1221 1221 234678899999999975 5788899999999999
Q ss_pred hhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCC
Q 010538 121 EAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGD 200 (508)
Q Consensus 121 ~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~ 200 (508)
.++ ...|+.+++....|.++..........+..+..++.+.. .. +++.++ ..+.......+
T Consensus 67 ~a~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------------~~~~~~--~~i~~~~~~~~ 127 (343)
T d1m6sa_ 67 MAH-TQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNG-AM---------------DPDDVR--KAIRPRNIHFP 127 (343)
T ss_dssp HHH-CCTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEECEETT-EE---------------CHHHHH--HHSCCSCTTSC
T ss_pred HHH-hccCCceeccccccceeeecccccccccceeeccccccC-cc---------------CHHHHH--Hhhhhhhcccc
Confidence 998 577888888887777665544444455677777765432 12 344444 44432222334
Q ss_pred CceEEE-EeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCC-----CCCCcEEEEecc
Q 010538 201 AYNLFA-FPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLS-----KYPVDFVVMSFY 274 (508)
Q Consensus 201 ~t~lv~-~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~-----~~~~D~~~~S~~ 274 (508)
++..++ ...++++.|.+.|++.+.++++ +|+++|+++++|+++..+....... ....+..+++.+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~---------~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (343)
T d1m6sa_ 128 RTSLIAIENTHNRSGGRVVPLENIKEICT---------IAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLS 198 (343)
T ss_dssp CEEEEEEESSBTTTTSBCCCHHHHHHHHH---------HHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESS
T ss_pred cccccccccccccCCceecCHHHHHHHHH---------HHHhcCeEEEeccccccccccccccchhhhcccccccccccc
Confidence 555454 4556677778888887776665 3445999999999987532211111 113456677777
Q ss_pred ccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHH
Q 010538 275 KIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAI 354 (508)
Q Consensus 275 K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i 354 (508)
|..+++. .|+++..++.+....... ....++.......+....... .. ....
T Consensus 199 ~~~~g~~-~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~a~~~~~~-~~--~~~~ 250 (343)
T d1m6sa_ 199 KGLCAPV-GSVVVGDRDFIERARKAR------------------------KMLGGGMRQAGVLAAAGIIAL-TK--MVDR 250 (343)
T ss_dssp STTCCSS-CEEEEECHHHHHHHHHHH------------------------HHHTCCCSSTHHHHHHHHHHH-HH--SSTT
T ss_pred ccccccc-cccccccHHHHhhhHhhC------------------------cccccccchhHHHHHhhhhhh-hh--hHHH
Confidence 7555353 577777776654333221 111222222222222212222 12 1222
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCC
Q 010538 355 CRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFC 434 (508)
Q Consensus 355 ~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~ 434 (508)
.+...+...++.+.+.++. +.....+.. .+++++.+++.. ....++.+.|.++||.+++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--------~~~v~~~~~~~~---~~a~~l~~~L~~~Gi~v~~~--- 310 (343)
T d1m6sa_ 251 LKEDHENARFLALKLKEIG------YSVNPEDVK--------TNMVILRTDNLK---VNAHGFIEALRNSGVLANAV--- 310 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHT------CBCCGGGCC--------SSEEEEECTTSS---SCHHHHHHHHHHHTEECEEE---
T ss_pred HHHHHHHHHHhhhHHHHhc------cCccCCCCC--------ceEEEEEeCCCc---ccHHHHHHHHHHCCCEEecC---
Confidence 3444556666666666652 333333332 688988876533 34456899999999998753
Q ss_pred CchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 435 NPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 435 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
.++.+|++++..+|+||||+++++++++++.+
T Consensus 311 ------------------------------------~~~~iRi~~~~~~t~edid~~v~~l~~v~~~~ 342 (343)
T d1m6sa_ 311 ------------------------------------SDTEIRLVTHKDVSRNDIEEALNIFEKLFRKF 342 (343)
T ss_dssp ------------------------------------ETTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 15689999999999999999999999988653
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.82 E-value=1.5e-18 Score=178.07 Aligned_cols=280 Identities=12% Similarity=0.006 Sum_probs=178.6
Q ss_pred cCCCCCCceEEEcCChHHHHHHHHhhcC-------CCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCcccc
Q 010538 97 FNASMKDYKCIFTSGATAALKLVGEAFP-------WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGL 169 (508)
Q Consensus 97 ~~~~~~~~~i~~t~g~t~al~~~~~~l~-------~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l 169 (508)
-|+..++..|++++|+|+++++++.+|. ..+|++||++...|+.+....+++ +.+...++.
T Consensus 117 gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~---~~~~~~~~~--------- 184 (425)
T d2hoxa1 117 GNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYF---DKKGYVWAG--------- 184 (425)
T ss_dssp TCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHS---CBTTEEEEE---------
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHHHHHc---CCCCCccCC---------
Confidence 3444444479999999999999999984 457899999998888776555543 443333322
Q ss_pred ccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEe
Q 010538 170 SESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLID 249 (508)
Q Consensus 170 ~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD 249 (508)
|.+.++ + ..++++++++++++|||||.+. + +..+++.+|+|
T Consensus 185 ------------D~~~~~--~------~~~~~~~ii~l~sPnNPtG~l~---------~----------~v~~~~~~I~D 225 (425)
T d2hoxa1 185 ------------NAANYV--N------VSNPEQYIEMVTSPNNPEGLLR---------H----------AVIKGCKSIYD 225 (425)
T ss_dssp ------------EGGGGT--T------CSCGGGEEEEEESSCTTTCCCC---------C----------CSSTTCEEEEE
T ss_pred ------------CHHHHH--h------hCCCCceEEEEECCCCCCcchh---------h----------hhhhCCEEEEe
Confidence 455666 3 3467899999999999999862 1 22368999999
Q ss_pred ccccCCC-CCCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhH-hhhccccccCceEEecccchhhhhhccCcccc
Q 010538 250 AAKGCVT-QPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAA-KLLKNTYFSGGTVAASIADIDFVKRRQGVEEL 325 (508)
Q Consensus 250 ~a~~~g~-~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~-~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 325 (508)
.++.... .++. ...+-++++.|++|.|| .+| +||++++++.+ +++.... .
T Consensus 226 EaY~~~~f~~~~-~~~~~~Ivl~S~SK~fg-laGlRiGw~i~~~~~i~~~~~~~~-----------------------~- 279 (425)
T d2hoxa1 226 MVYYWPHYTPIK-YKADEDILLFTMSKFTG-HSGSRFGWALIKDESVYNNLLNYM-----------------------T- 279 (425)
T ss_dssp CTTCSTTTSCCC-SCBCCSEEEEEHHHHTS-CGGGCCEEEEECCHHHHHHHHHHH-----------------------H-
T ss_pred ccccCccccchh-hhcCCeEEEEeCHHhcc-CcchheeeEEeCCHHHHHHHHHhh-----------------------c-
Confidence 9986432 2222 23356899999999999 658 89998886643 3333221 0
Q ss_pred ccCCCCChhHHHHHHHHHHHHHh----------cChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCC-----
Q 010538 326 FEDGTASFLSIASIRHGFNLINS----------LTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSE----- 390 (508)
Q Consensus 326 ~~~gt~~~~~~~~l~~al~~~~~----------~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~----- 390 (508)
+...+++.....+..++++.... .-++..++++++..+++.+.|.+.. .+.+...+...
T Consensus 280 ~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~~------~~~l~~~p~~~~~~f~ 353 (425)
T d2hoxa1 280 KNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSD------RFSYQELPQSEYCNYF 353 (425)
T ss_dssp HHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSS------SEECCCCCSCEEETTT
T ss_pred cCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CceeeccCCccceeee
Confidence 11112233333333334432211 1134556667777888888887763 22221111000
Q ss_pred -cccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCC
Q 010538 391 -VSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHG 469 (508)
Q Consensus 391 -~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 469 (508)
......+.+++++....+.. ++.++|.++||.+++|..|..
T Consensus 354 ~~~~~~~~~f~wl~~~~~~~~-----~~~~lL~e~gI~v~pGs~FG~--------------------------------- 395 (425)
T d2hoxa1 354 RRMRPPSPSYAWVKCEWEEDK-----DCYQTFQNGRINTQNGVGFEA--------------------------------- 395 (425)
T ss_dssp TEEECCCCSEEEEEECSGGGC-----SHHHHHHHTTEECEEGGGGTS---------------------------------
T ss_pred eeccCCCcceeeeeCCCChHH-----HHHHHHHhCCEEEEechhcCC---------------------------------
Confidence 00011256777777543322 267889999999999875421
Q ss_pred CCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 470 KPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 470 ~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
.++++|||+. .+.|+++.+++.|++|++
T Consensus 396 -~~~yvRisl~--~~~e~ld~~l~rL~~~v~ 423 (425)
T d2hoxa1 396 -SSRYVRLSLI--KTQDDFDQLMYYLKDMVK 423 (425)
T ss_dssp -CTTEEEEECS--SCHHHHHHHHHHHHHHHT
T ss_pred -CCCEEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 2579999986 488889999999999875
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.81 E-value=4.9e-19 Score=179.52 Aligned_cols=343 Identities=13% Similarity=0.058 Sum_probs=219.5
Q ss_pred CCCCCCCHHHHHHHHHHhhcccc--CCCCCccchhhhhhHHHHH-HHHHHHHHcCCCCCCceE-EEcCChHHHHHHHHhh
Q 010538 47 AGATLYSELQMEAIFRDFTTNVY--GNPHSQSDISLATCDIVRA-AREQVLDYFNASMKDYKC-IFTSGATAALKLVGEA 122 (508)
Q Consensus 47 ~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~r~~la~~~~~~~~~~~i-~~t~g~t~al~~~~~~ 122 (508)
++...+++.|.+++-. .+.+.| +.|+..|+.|.+..+.+|. +++++.++||++..++.| +=..|++.|+..++.+
T Consensus 34 aSEN~~S~~v~~algS-~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~An~av~~a 112 (463)
T d2a7va1 34 ASENFCSRAALEALGS-CLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTA 112 (463)
T ss_dssp TTCCCCCHHHHHHHTS-GGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHH
T ss_pred ccCCcCCHHHHHHhcc-hhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCchhccCCccccccHHHHHHHHHH
Confidence 6677788888887644 444544 5677777777666666665 788899999998763112 2335777899999999
Q ss_pred cCCCCCCeEEEecccccchHH---HH--HHHHhcCCeEEEEc--cCC-ccCccccccccccccccccchhhhhcCCCCCC
Q 010538 123 FPWSHQSSYMYTMENHNSVLG---IR--EYALSQGAAAFAID--VEE-AVDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 123 l~~~~g~~vl~~~~~h~s~~~---~~--~~~~~~G~~v~~v~--~~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
| .++||+|+.-+..+...+. .. ......|.-...++ ++. ++.+ |.++++ +.++
T Consensus 113 l-l~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~I---------------Dyd~~~--~~a~- 173 (463)
T d2a7va1 113 L-LQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLI---------------DYNQLA--LTAR- 173 (463)
T ss_dssp H-CCSCEECCC-------------------------------CCBCTTTCSB---------------CHHHHH--HHHH-
T ss_pred H-cCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCCCCcC---------------cHHHHH--HHHh-
Confidence 9 7899999877655543321 10 11111233233333 342 3444 577776 3332
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC-----CCCCCCCCCCCCcEE
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC-----VTQPPDLSKYPVDFV 269 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~-----g~~~~d~~~~~~D~~ 269 (508)
..++++|++-.- ..-..+|.+++.++|++ .|+++++|.+|-. |..|-++. .+|++
T Consensus 174 ----~~kPklIi~G~S--~y~r~~d~~~~reIad~------------vga~l~~D~aH~aGLIA~g~~~sP~~--~aDvv 233 (463)
T d2a7va1 174 ----LFRPRLIIAGTS--AYARLIDYARMREVCDE------------VKAHLLADMAHISGLVAAKVIPSPFK--HADIV 233 (463)
T ss_dssp ----HHCCSEEEECCS--SCCSCCCHHHHHHHHHH------------TTCEEEEECGGGHHHHHTTSSCCGGG--TCSEE
T ss_pred ----hcCCceEEeccc--ccccccCHHHHHHHhhc------------ccceEEechhhhhHHhhhhhhcChhh--hhhhh
Confidence 346788887653 34567899999999998 8999999999964 45555554 37999
Q ss_pred EEeccccccCCCcceEEEEech---------------hHhhhccccccCceEEecccchhhhhhccCccccccCCCCChh
Q 010538 270 VMSFYKIFGYPTGLGALIMRND---------------AAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFL 334 (508)
Q Consensus 270 ~~S~~K~~g~P~G~G~l~~~~~---------------~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 334 (508)
++|+||+|.||+| |+++.+++ +.+++...++.+. -|.|...
T Consensus 234 t~tTHKTlrGPrg-GiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~-----------------------qggph~h 289 (463)
T d2a7va1 234 TTTTHKTLRGARS-GLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSL-----------------------QGGPHNH 289 (463)
T ss_dssp EEESSGGGCSCSC-EEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTT-----------------------CCSCCHH
T ss_pred hchhhhhhcCCCc-eEEEEcccccccccccCccchhHHHHHhhhhcCccc-----------------------chhhhhh
Confidence 9999998888997 88888874 2233333333221 2567788
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCH
Q 010538 335 SIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGY 414 (508)
Q Consensus 335 ~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 414 (508)
.+++++.++....+...+...+++.++++.|.+.|.+. |+++++..+. .+++.+++.... ++.
T Consensus 290 ~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~-------G~~vv~ggTd-------nHlvlvdl~~~~---~~G 352 (463)
T d2a7va1 290 AIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-------GYSLVSGGTD-------NHLVLVDLRPKG---LDG 352 (463)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-------TCEEGGGSCS-------SSEEEEECTTTT---CCH
T ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhC-------CCeeecCCCC-------CceeeeeccccC---CCH
Confidence 89999999887665557899999999999999999987 8999876554 788888875422 455
Q ss_pred HHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC----CCHHHHHH
Q 010538 415 REVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM----STFEDAKV 490 (508)
Q Consensus 415 ~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~----~t~eev~~ 490 (508)
..+.+.|++.||.+.--..+. |+. ...++.|||+.... -.++|+..
T Consensus 353 ~~ae~~Le~~gI~~Nkn~iP~--------------------------D~~----~~~~sGiRiGT~a~TtrG~~e~dm~~ 402 (463)
T d2a7va1 353 ARAERVLELVSITANKNTCPG--------------------------DRS----AITPGGLRLGAPALTSRQFREDDFRR 402 (463)
T ss_dssp HHHHHHHHHTTEECEEECCTT--------------------------CCC----SSSCSEEEEESHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHhccCccCCccCCC--------------------------CCC----CCCCCceEeCCHHHHhCCCCHHHHHH
Confidence 678999999999976422111 110 11367899997654 36899999
Q ss_pred HHHhhhhhhh
Q 010538 491 NRCSSFDFVN 500 (508)
Q Consensus 491 l~~~~~~~~~ 500 (508)
+.++|.+.++
T Consensus 403 iA~~I~~~l~ 412 (463)
T d2a7va1 403 VVDFIDEGVN 412 (463)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888877653
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.80 E-value=1.5e-19 Score=182.85 Aligned_cols=166 Identities=17% Similarity=0.113 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEe-cccccchHHHHHHHHhcCCeEEEEccCCcc
Q 010538 86 VRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYT-MENHNSVLGIREYALSQGAAAFAIDVEEAV 164 (508)
Q Consensus 86 ~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~-~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~ 164 (508)
.+.+++..++.++..+.+ ++++++|+++|+..++.++ .+++++|+++ ...|+++....+. .|+++ ++.+
T Consensus 52 ~~~l~~~~~~~~~~~~~e-~~~~~~~~~~a~~~~l~al-~~~~~vi~~~~~~~~~~~~~~~~l---~g~~~--v~~~--- 121 (366)
T d2aeua1 52 AEKVNEYGLKHLGGDEND-KCVGFNRTSSAILATILAL-KPKKVIHYLPELPGHPSIERSCKI---VNAKY--FESD--- 121 (366)
T ss_dssp HHHHHHHHHHHHTCCTTE-EEEEESSHHHHHHHHHHHH-CCSEEEEECSSSSCCTHHHHHHHH---TTCEE--EEES---
T ss_pred HHHHHHHHHHHccCCCcc-EEEEeCCHHHHHHHHHHHh-CCCCEEEEecCCCcchhHHHHHHh---cCCeE--ECCC---
Confidence 456777788888876543 7899999999999999998 4555555554 3678888766554 47764 3332
Q ss_pred CccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCC-ccccCHHHHHHHHcCCccccccCCCCCCC
Q 010538 165 DNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFS-GSRFNLDLINIMKKNPERILEISPFSKGR 243 (508)
Q Consensus 165 ~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~t-G~~~~i~~i~~l~~~~~~~~~~~~~~~~g 243 (508)
|+++++ +++ +++|++|++.+++|++ +.+.++++|.++|++ +|
T Consensus 122 -----------------d~e~l~--~~i------~~~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~------------~~ 164 (366)
T d2aeua1 122 -----------------KVGEIL--NKI------DKDTLVIITGSTMDLKVIELENFKKVINTAKN------------KE 164 (366)
T ss_dssp -----------------CHHHHH--TTC------CTTEEEEEECBCTTSCBCCHHHHHHHHHHHHH------------HT
T ss_pred -----------------CHHHHH--Hhc------CCCceEEEEEecCCCCcCCHHHHHHHHHHhcc------------Cc
Confidence 367788 444 6889999999998864 467788899999987 99
Q ss_pred eEEEEeccccCCCCC----CCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccc
Q 010538 244 WMVLIDAAKGCVTQP----PDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNT 299 (508)
Q Consensus 244 ~~vivD~a~~~g~~~----~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~ 299 (508)
+++++|++|+.+... ....+.++|++++|+||.++|| +.|+++.+++++++++..
T Consensus 165 ~~~i~De~y~~~~~~~~~~~~~~~~~~di~~~S~sK~~~g~-~~G~i~~~~~~i~~~~~~ 223 (366)
T d2aeua1 165 AIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGP-RGGLLAGKKELVDKIYIE 223 (366)
T ss_dssp CCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSC-SCEEEEEEHHHHHHHHHH
T ss_pred EEEEEecCccccccccccCCCHhhcCceEEEeccccccccc-ceeEEEecHHHHHHHHHH
Confidence 999999998753221 1222457999999999998866 579999999998877644
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.80 E-value=2.8e-18 Score=174.46 Aligned_cols=349 Identities=13% Similarity=0.031 Sum_probs=242.8
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhcccc--CCCCCccchhhhhhHHHHH-HHHHHHHHcCCCCCCceE--EEcCChH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVY--GNPHSQSDISLATCDIVRA-AREQVLDYFNASMKDYKC--IFTSGAT 113 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~r~~la~~~~~~~~~~~i--~~t~g~t 113 (508)
.+.+-|- ++...+++.|++++-. .+.+.| +.|+..|+.|....+.+|. +.+.+.++||++++. +- +=..|++
T Consensus 31 ~~~l~LI-aSEN~~S~~v~~algS-~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~-~~anVqp~SGs 107 (470)
T d1rv3a_ 31 RVGLELI-ASENFASRAVLEALGS-CLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQC-WGVNVQPYSGS 107 (470)
T ss_dssp HSSEECC-TTCCCCCHHHHHHHTS-GGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTT-EEEECCCSSHH
T ss_pred HcCceEe-cCCCcCCHHHHHHhcc-hhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCChhh-ccccccccCCc
Confidence 3444554 6677778888887644 444444 5677777777766666665 778889999998542 22 2335778
Q ss_pred HHHHHHHhhcCCCCCCeEEEecccccchHHHH------H-HHHhcCCeEEEEccCCc-cCccccccccccccccccchhh
Q 010538 114 AALKLVGEAFPWSHQSSYMYTMENHNSVLGIR------E-YALSQGAAAFAIDVEEA-VDNDGLSESLVTSTKISLLPIQ 185 (508)
Q Consensus 114 ~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~------~-~~~~~G~~v~~v~~~~~-~~~~~l~~~~~~~~~~~~d~~~ 185 (508)
.|+..++.++ .++||+|+.....+.+.+.-- . .......+....+++.+ +.+ |.++
T Consensus 108 ~An~av~~al-l~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~~~~I---------------Dyd~ 171 (470)
T d1rv3a_ 108 PANFAVYTAL-VEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYI---------------DYDR 171 (470)
T ss_dssp HHHHHHHHHH-TCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSB---------------CHHH
T ss_pred cHHHHHHHHh-cCCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEecccCcc---------------cHHH
Confidence 8999999999 789999998765543322100 0 00011256777777754 455 5777
Q ss_pred hhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC-----CCCCCC
Q 010538 186 RRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC-----VTQPPD 260 (508)
Q Consensus 186 l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~-----g~~~~d 260 (508)
++ +..+ ..++++|++-.- ..-..+|.+++.++|++ .|+++++|.+|-. |..|-+
T Consensus 172 l~--~~a~-----~~kPklIi~G~S--~y~r~~d~~~~reIad~------------vga~l~~D~aH~aGLIA~g~~~sP 230 (470)
T d1rv3a_ 172 LE--ENAR-----LFHPKLIIAGTS--CYSRNLDYGRLRKIADE------------NGAYLMADMAHISGLVVAGVVPSP 230 (470)
T ss_dssp HH--HHHH-----HHCCSEEEECCS--SCCSCCCHHHHHHHHHH------------TTCEEEEECTTTHHHHHHTSSCCG
T ss_pred HH--HHHH-----hhCcceEeechh--hccccCCHHHHHHHHhc------------cCCeEEecchhhhhhccccccCCh
Confidence 76 3332 346788887653 34567899999999998 8999999999965 555555
Q ss_pred CCCCCCcEEEEeccccccCCCcceEEEEech---------------hHhhhccccccCceEEecccchhhhhhccCcccc
Q 010538 261 LSKYPVDFVVMSFYKIFGYPTGLGALIMRND---------------AAKLLKNTYFSGGTVAASIADIDFVKRRQGVEEL 325 (508)
Q Consensus 261 ~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~---------------~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 325 (508)
+. .+|++++|+||+|.||+| |+++.+++ +.+++...++.+.
T Consensus 231 l~--~aDvvt~tTHKtlrGPrg-GiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~--------------------- 286 (470)
T d1rv3a_ 231 FE--HCHVVTTTTHKTLRGCRA-GMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGL--------------------- 286 (470)
T ss_dssp GG--TCSEEEEESSGGGCCCSC-EEEEEECSBCC-------CCBCCHHHHHHHHHTTTT---------------------
T ss_pred hh--eeeeeeeehhhhccCCcc-eEEEEccccccccccccchhHHHHHHHHhhhcCccc---------------------
Confidence 54 379999999999888997 99888764 3333333333222
Q ss_pred ccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEee
Q 010538 326 FEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLK 405 (508)
Q Consensus 326 ~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 405 (508)
-|.|....+++++.++....+.-..+..+++.+.++.|.+.|.+. |++++...+. .+++.+++.
T Consensus 287 --qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~-------G~~v~~ggTd-------nHlvlvdl~ 350 (470)
T d1rv3a_ 287 --QGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL-------GYKIVTGGSD-------NHLILVDLR 350 (470)
T ss_dssp --CCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-------TCEEGGGSCS-------SSEEEEEGG
T ss_pred --cccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhC-------CceeccCCCC-------CceEEEeec
Confidence 256778889999999887655447899999999999999999986 7999876554 788888875
Q ss_pred CCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC---
Q 010538 406 RPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM--- 482 (508)
Q Consensus 406 ~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~--- 482 (508)
... ++...+.+.|++.||.+.--.....+ ....++.|||+....
T Consensus 351 ~~g---~~g~~ae~~Le~~gI~~Nkn~iP~D~------------------------------~~~~~sGiRiGT~alTtr 397 (470)
T d1rv3a_ 351 SKG---TDGGRAEKVLEACSIACNKNTCPGDK------------------------------SALRPSGLRLGTPALTSR 397 (470)
T ss_dssp GGT---CCHHHHHHHHHHTTEECEEECCSSCS------------------------------CTTSCCEEEEECHHHHHT
T ss_pred ccC---CcHHHHHHHHHHcCcEECCCcCCCCC------------------------------CCCCCCeeEecCHHHHhC
Confidence 421 45566899999999987532211100 011367899997644
Q ss_pred -CCHHHHHHHHHhhhhhhh
Q 010538 483 -STFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 483 -~t~eev~~l~~~~~~~~~ 500 (508)
-+++|+.++.++|.+.++
T Consensus 398 G~~e~dm~~iA~~I~~~l~ 416 (470)
T d1rv3a_ 398 GLLEKDFQKVAHFIHRGIE 416 (470)
T ss_dssp TCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 478999999988887664
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=99.79 E-value=4.9e-19 Score=181.05 Aligned_cols=352 Identities=11% Similarity=-0.006 Sum_probs=207.3
Q ss_pred chHHHHHHhhccCC-CCCeeeeCC------CCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc
Q 010538 25 SIDQIRATEFKRLE-NGTVYLDHA------GATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF 97 (508)
Q Consensus 25 ~~~~~r~~~f~~~~-~~~iyld~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~ 97 (508)
.+..+-+ +|.... ++.|.|..| +.+++.+.+.++... ...+ .....|....+ ..+.|+++++++
T Consensus 14 ~i~~~~~-~~~~d~~~~~InL~iG~~~d~~~~~~~~~~V~~a~~~-~~~~---~~~~~Y~~~~G----~~~lr~aia~~~ 84 (401)
T d7aata_ 14 PILGVTE-AFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAM-IAAK---KMDKEYLPIAG----LADFTRASAELA 84 (401)
T ss_dssp HHHHHHH-HHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHH-HHHT---TCCCCCCCTTC----CHHHHHHHHHHH
T ss_pred hHHHHHH-HHhCCCCCCcEEccCCCCcCCCCCCCCCHHHHHHHHH-HhhC---CCCCCCCCCCC----CHHHHHHHHHHH
Confidence 3455554 564431 456766655 344555666665433 3221 11112332222 345566666654
Q ss_pred CC------CCCCceEEEcCChH-----HHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCc
Q 010538 98 NA------SMKDYKCIFTSGAT-----AALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDN 166 (508)
Q Consensus 98 ~~------~~~~~~i~~t~g~t-----~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~ 166 (508)
.- +++ .|+.+.++. .++.+++.++ ..+||+|++++..++.+....+. .|++++.+|+......
T Consensus 85 ~~~~~~~~~~~--~i~~~~~~~~~g~~~~~~~~~~~l-~~pGd~Vlv~~P~y~~y~~~~~~---~g~~~~~~~~~~~~~~ 158 (401)
T d7aata_ 85 LGENSEAFKSG--RYVTVQGISGTGSLRVGANFLQRF-FKFSRDVYLPKPSWGNHTPIFRD---AGLQLQAYRYYDPKTC 158 (401)
T ss_dssp HCTTCHHHHTT--CEEEEEEEHHHHHHHHHHHHHHHH-CTTCCEEEEEESCCTTHHHHHHH---TTCEEEEEECEETTTT
T ss_pred hccCCcccCcC--ceEEeccchHHHHHHHHHHhhHhh-cCCCceEEEecCCCcchhhHHHH---cCCeEEEEeccccccc
Confidence 32 344 455543322 3566677777 68999999999888877666554 5999999998643322
Q ss_pred cccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEE
Q 010538 167 DGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMV 246 (508)
Q Consensus 167 ~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~v 246 (508)
. ++.+.+. +.+. ...++++++++++++||||.+++.+++.++++ +|++++++|
T Consensus 159 ~-------------~~~~~~~--~~~~---~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~---------~a~~~~~~i 211 (401)
T d7aata_ 159 S-------------LDFTGAM--EDIS---KIPEKSIILLHACAHNPTGVDPRQEQWKELAS---------VVKKRNLLA 211 (401)
T ss_dssp E-------------ECHHHHH--HHHT---TSCTTCEEEEESSSCTTTCCCCCHHHHHHHHH---------HHHHTTCEE
T ss_pred c-------------ccHHHHH--HHHh---cCCCceEEEEecCCCCCccccCCHHHHHHHHH---------HHhcceEEE
Confidence 1 1344444 3331 23578899999999999999999998888877 677799999
Q ss_pred EEeccccCCCCC---CCC------C-CCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchh
Q 010538 247 LIDAAKGCVTQP---PDL------S-KYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADID 314 (508)
Q Consensus 247 ivD~a~~~g~~~---~d~------~-~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~ 314 (508)
|.|.++..-.-. .+. . ....-+++.|++|.++ .+| +|++++..+.++..........
T Consensus 212 i~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~-~~G~RiG~~~~~~~~~~~~~~~~~~~~---------- 280 (401)
T d7aata_ 212 YFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMG-LYGERAGAFTVICRDAEEAKRVESQLK---------- 280 (401)
T ss_dssp EEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSC-CGGGCEEEEEEECSSHHHHHHHHHHHH----------
T ss_pred EEeccchhhhcCCcccchhhhhhhhhhhcccceeEeccccce-eeccccceeecchHHHHHHHHHHHHHH----------
Confidence 999998642211 000 0 1122367789999888 446 8999999887654433210000
Q ss_pred hhhhccCccccccCCCCChhHHHHHHHHHH------HHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCC
Q 010538 315 FVKRRQGVEELFEDGTASFLSIASIRHGFN------LINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYT 388 (508)
Q Consensus 315 ~~~~~~~~~~~~~~gt~~~~~~~~l~~al~------~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~ 388 (508)
...+....+++ ......+...+. .+.+ .++.+++++.+.++.+.+.|++... ...+..+.+.+
T Consensus 281 ------~~~~~~~~~~~-~~~q~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~~---~~~~~~~~~~~ 349 (401)
T d7aata_ 281 ------ILIRPMYSNPP-MNGARIASLILNTPELRKEWLV-EVKGMADRIISMRTQLVSNLKKEGS---SHNWQHITDQI 349 (401)
T ss_dssp ------HHHHHHHSSCC-HHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTC---CSCCHHHHHCC
T ss_pred ------HHhhccccccc-hHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCC---CCCcceECCCC
Confidence 00111112222 222222222221 1111 2567778888899999999988631 01123333432
Q ss_pred CCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccC
Q 010538 389 SEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIH 468 (508)
Q Consensus 389 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 468 (508)
+.++|+.+ +...+.++++++||.+.+|
T Consensus 350 --------G~F~~~~l--------s~e~~~~L~~e~gV~~~pg------------------------------------- 376 (401)
T d7aata_ 350 --------GMFCFTGL--------KPEQVERLTKEFSIYMTKD------------------------------------- 376 (401)
T ss_dssp --------SSEEECCC--------CHHHHHHHHHHHCEECCTT-------------------------------------
T ss_pred --------eEEEecCC--------CHHHHHHHHHhCCEEECCC-------------------------------------
Confidence 56666433 2234666778899987553
Q ss_pred CCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 469 GKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 469 ~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
+|||+.. .++++|+++.++|.++++
T Consensus 377 ------~Ris~a~-~~~~~i~~la~ai~~v~k 401 (401)
T d7aata_ 377 ------GRISVAG-VASSNVGYLAHAIHQVTK 401 (401)
T ss_dssp ------CEEEGGG-CCTTTHHHHHHHHHHHHC
T ss_pred ------cEEEecc-CCHHHHHHHHHHHHHHhC
Confidence 5999874 356779999999988764
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.78 E-value=5.2e-18 Score=170.96 Aligned_cols=316 Identities=11% Similarity=0.016 Sum_probs=202.1
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEEcc
Q 010538 82 TCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDV 160 (508)
Q Consensus 82 ~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~ 160 (508)
...-.+.+++.+|++-|.+. .++++++..|+..++.++ .++|++||++..-|.......+ .+.++|+++..++.
T Consensus 57 ~nPT~~~LE~~la~LEg~~~----a~~~~SGmaAi~~~l~~l-~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~ 131 (392)
T d1gc0a_ 57 SNPTLNLLEARMASLEGGEA----GLALASGMGAITSTLWTL-LRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDM 131 (392)
T ss_dssp CCHHHHHHHHHHHHHHTCSE----EEEESSHHHHHHHHHHHH-CCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECT
T ss_pred CChHHHHHHHHHHHHhCCcc----eeehhhHHHHHHHHHHhh-ccCCCeeecccccchhhhhhhhhhhccCCcccccCCc
Confidence 33456778899999999864 356678888999999888 6889999999988887766654 46778999999876
Q ss_pred CCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCC
Q 010538 161 EEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFS 240 (508)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~ 240 (508)
. |++.++ ++ ++++|++|++.++.||+..+.|++.|+++||+
T Consensus 132 ~--------------------d~~~~~--~a------i~~~t~lv~~Esp~NP~l~v~Di~~i~~ia~~----------- 172 (392)
T d1gc0a_ 132 A--------------------DLQALE--AA------MTPATRVIYFESPANPNMHMADIAGVAKIARK----------- 172 (392)
T ss_dssp T--------------------CHHHHH--HH------CCTTEEEEEEESSCTTTCCCCCHHHHHHHHGG-----------
T ss_pred c--------------------CHHHHH--Hh------CCCCCeEEEecccccceeeecchHHHHHHHHh-----------
Confidence 4 356667 44 36899999999999999999999999999998
Q ss_pred CCCeEEEEeccccCC--CCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhh
Q 010538 241 KGRWMVLIDAAKGCV--TQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFV 316 (508)
Q Consensus 241 ~~g~~vivD~a~~~g--~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~ 316 (508)
+|++++||.+.+.+ ..|++ .|+|+++-|+.|.++|-.. .|.++++++.+++++-..
T Consensus 173 -~g~~~vvDnT~atP~~~~Pl~---~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~---------------- 232 (392)
T d1gc0a_ 173 -HGATVVVDNTYCTPYLQRPLE---LGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQG---------------- 232 (392)
T ss_dssp -GTCEEEEECTTTHHHHCCGGG---GTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTH----------------
T ss_pred -cCCEEEEecCccCccccChHH---hCCCEEEEecceeecCCcccccccccchhHHHHHHHHHH----------------
Confidence 89999999998753 44554 4799999999999884322 588888887765432110
Q ss_pred hhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEE-EecCCCCC-----
Q 010538 317 KRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCT-IYGTYTSE----- 390 (508)
Q Consensus 317 ~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~-~~~~~~~~----- 390 (508)
.+....++++....+.+...++. +..+.++..+.+..+.+.|++.+ .++ ++-|.-..
T Consensus 233 ------~~~~~G~~~~p~da~ll~rgl~T-----L~lRm~~~~~nA~~lA~~L~~hp------~V~~V~yPgl~s~p~~~ 295 (392)
T d1gc0a_ 233 ------LKDMTGAVLSPHDAALLMRGIKT-----LNLRMDRHCANAQVLAEFLARQP------QVELIHYPGLASFPQYT 295 (392)
T ss_dssp ------HHHHTCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHTCT------TEEEEEEC---------
T ss_pred ------HHHccCCcCChhhHHHHHhcccc-----HHHHHHHHHHHHHHHHHHHHhCC------CccEEeeccccCCcccc
Confidence 11223345555555555555553 45666777777888888887763 332 33331100
Q ss_pred ---cccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCc---hHHHhhcCCChhhhhhhhhcCCccCCCc
Q 010538 391 ---VSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNP---GACAKYLGLSHSDLLSNIEAGHVCWDDN 464 (508)
Q Consensus 391 ---~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~---~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 464 (508)
-.....+++++|.+++... . ...+...|+-.++.++-|...+. +...-...++ +....++|.
T Consensus 296 ~~~~~~~~~gg~~sf~l~~~~~-~--~~~f~~~L~l~~~a~SlGg~eSLi~~pa~~th~~~~-~e~r~~~Gi-------- 363 (392)
T d1gc0a_ 296 LARQQMSQPGGMIAFELKGGIG-A--GRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYT-PEERAHYGI-------- 363 (392)
T ss_dssp -------CCTTEEEEEETTHHH-H--HHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSC-HHHHHHTTC--------
T ss_pred cccccccCCCcEEEEEEeCCHH-H--HHHHHHhCCcceEeeccCCcChhhcCccccccccCC-HHHHHHcCC--------
Confidence 0001127899999964211 0 11233344333344444432221 1100000001 112233443
Q ss_pred cccCCCCCceEEEecCCCCCHHHHHHHHHhhh
Q 010538 465 DIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 465 ~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~ 496 (508)
.++.||||++.-+.+|=++.|.++|+
T Consensus 364 ------~~~liRlSVGlEd~eDLi~Dl~~AL~ 389 (392)
T d1gc0a_ 364 ------SEGLVRLSVGLEDIDDLLADVQQALK 389 (392)
T ss_dssp ------CTTEEEEECCSSCHHHHHHHHHHHHH
T ss_pred ------CcCeEEEEeeeCCHHHHHHHHHHHHH
Confidence 47899999998555555555555443
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.77 E-value=3.3e-17 Score=165.16 Aligned_cols=312 Identities=11% Similarity=0.017 Sum_probs=203.5
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEEccC
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDVE 161 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~~ 161 (508)
..-.+.+.+.+|.+-|.+.. ++++++..|+..++.++ .++|++||++..-|........ .+.+.|+++..++..
T Consensus 62 nPT~~~LE~~la~LEgg~~a----~~~sSGmaAi~~~l~~l-l~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~~ 136 (397)
T d1y4ia1 62 NPTTDALEKKLAVLERGEAG----LATASGISAITTTLLTL-CQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAG 136 (397)
T ss_dssp CHHHHHHHHHHHHHHTCSEE----EEESSHHHHHHHHHHHH-CCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT
T ss_pred CHHHHHHHHHHHHHhCCccc----eeehHHHHHHHHHHhhc-cCCCCeeeeecccccccchhhhcccCCCceEeeccCCC
Confidence 34567788999999998644 56677888999999888 7899999999988877766654 577889999998764
Q ss_pred CccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCC
Q 010538 162 EAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK 241 (508)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~ 241 (508)
|++.++ +++ .++|++|++..+.||+..+.|+++|++++|+
T Consensus 137 --------------------d~~~~~--~~i------~~~Tklv~~Esp~NP~l~v~Di~~i~~iA~~------------ 176 (397)
T d1y4ia1 137 --------------------KPEEIR--AAM------RPETKVVYIETPANPTLSLVDIETVAGIAHQ------------ 176 (397)
T ss_dssp --------------------SHHHHH--HHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHH------------
T ss_pred --------------------CHHHHH--Hhc------CCCCcEEEecCCcccceeecccHHHHHHhhc------------
Confidence 356667 443 5799999999999999999999999999998
Q ss_pred CCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhc
Q 010538 242 GRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRR 319 (508)
Q Consensus 242 ~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~ 319 (508)
+|++++||.+.+.+..-- ..+.|+|+++.|..|.++|-.. .|+++.+++.+.+.+-..
T Consensus 177 ~gi~~vvDnT~atP~~~~-Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~------------------- 236 (397)
T d1y4ia1 177 QGALLVVDNTFMSPYCQQ-PLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVG------------------- 236 (397)
T ss_dssp TTCEEEEECTTTCTTTCC-GGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTH-------------------
T ss_pred CCceEEecCcccCcccCc-chhcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHH-------------------
Confidence 999999999976543322 2234799999999998884322 588888887765432110
Q ss_pred cCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceE-EEecCCCCCcccC----
Q 010538 320 QGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVC-TIYGTYTSEVSYH---- 394 (508)
Q Consensus 320 ~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~-~~~~~~~~~~~~~---- 394 (508)
.+....+.++....+.+...++. +..+.++..+.+..+.+.|++.+ .| +++-|.-. ..+.
T Consensus 237 ---~~~~~G~~l~p~~a~l~~rgl~T-----L~lRm~~~~~nA~~lA~~L~~hp------~V~~V~yPgl~-s~p~h~~~ 301 (397)
T d1y4ia1 237 ---LKDITGGCMSPFNAWLTLRGVKT-----LGIRMERHCENALKIARFLEGHP------SITRVYYPGLS-SHPQYELG 301 (397)
T ss_dssp ---HHHTTCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHTCT------TEEEEECTTST-TCTTHHHH
T ss_pred ---HHhCcCCcCCHHHHHHHHcCcCc-----HHHHHHHHHHHHHHHHHHHHhCC------CcCeEeCCCCC-CCcccccc
Confidence 11122344555445544445443 46667777888888888888874 45 44444321 0000
Q ss_pred -----CCCceEEEEeeCCCCCccCHHHHHHHHhhC---CCeeccCCCCCchHHHhhcCCChh----hhhhhhhcCCccCC
Q 010538 395 -----DTGSMVSFNLKRPDGSWFGYREVEKLASLS---GIQLRTGCFCNPGACAKYLGLSHS----DLLSNIEAGHVCWD 462 (508)
Q Consensus 395 -----~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~---gI~v~~g~~~~~~~~~~~~~~~~s----~~~~~~~~~~~~~~ 462 (508)
.-+++++|.+.+.. ....+.++.- ++.++-|..-+.- .+++. ..|+ ...+.+|.
T Consensus 302 ~~~~~g~gg~~sf~~~~~~------~~~~~f~~~L~l~~~a~SlGg~eSLi-~~p~~-~th~~~~~e~r~~~Gi------ 367 (397)
T d1y4ia1 302 QRQMSLPGGIISFEIAGGL------EAGRRMINSVELCLLAVSLGDTETLI-QHPAS-MTHSPVAPEERLKAGI------ 367 (397)
T ss_dssp HHHCSSCCSEEEEEETTHH------HHHHHHHHTCSSSEECSCCSCSSCEE-ECTTT-TTTSSSCHHHHHHTTC------
T ss_pred ccccCCCCeEEEEEecCCH------HHHHHHHHcCCccceeeccCccccee-eCccc-cccccCCHHHHHHcCC------
Confidence 13789999986521 1123444433 3334444221110 00000 0111 11223333
Q ss_pred CccccCCCCCceEEEecCCCCCHHHHHHHHHhhh
Q 010538 463 DNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 463 ~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~ 496 (508)
.++.||+|++.-+.+|=++.|-++|+
T Consensus 368 --------~~~liRlsvGlEd~~DLi~Dl~~AL~ 393 (397)
T d1y4ia1 368 --------TDGLIRLSVGLEDPEDIINDLEHAIR 393 (397)
T ss_dssp --------CTTEEEEECCSSCHHHHHHHHHHHHH
T ss_pred --------CcCEEEEEeccCCHHHHHHHHHHHHH
Confidence 47899999998666666666555554
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=99.75 E-value=3e-18 Score=175.77 Aligned_cols=359 Identities=14% Similarity=0.052 Sum_probs=204.1
Q ss_pred chHHHHHHhhccCC-CCCeeeeCC------CCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc
Q 010538 25 SIDQIRATEFKRLE-NGTVYLDHA------GATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF 97 (508)
Q Consensus 25 ~~~~~r~~~f~~~~-~~~iyld~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~ 97 (508)
.+-.+.+ +|.... ++.|.|.-| +..++.|.|.++ .+.+..+... ...|....+ ..+.|+++++++
T Consensus 16 ~i~~l~~-~~~~d~~~~~Inl~iG~~~d~~g~~~~~~~V~~a-~~~~~~~~~~--~~~Y~p~~G----~p~lreaia~~~ 87 (412)
T d1ajsa_ 16 LVFKLIA-DFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKV-EQRIANNSSL--NHEYLPILG----LAEFRTCASRLA 87 (412)
T ss_dssp HHHHHHH-HHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHH-HHHHHTCTTC--CCCCCCTTC----CHHHHHHHHHHH
T ss_pred hHHHHHH-HHhcCCCCCcEEeeCCCCcCCCCCCCCcHHHHHH-HHHHHhCCCc--CCCCCCCCC----CHHHHHHHHHHH
Confidence 4555666 675431 345655544 445555666554 3434322111 112333222 345566666654
Q ss_pred ----CC--CCCCceEEEcCChHHHHHHHHhhc------CCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEc-cCCcc
Q 010538 98 ----NA--SMKDYKCIFTSGATAALKLVGEAF------PWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAID-VEEAV 164 (508)
Q Consensus 98 ----~~--~~~~~~i~~t~g~t~al~~~~~~l------~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~-~~~~~ 164 (508)
+. .++...++.|++.+.++..+..++ ...+||+|++++..++++....+. .|++++.++ ..+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~---~G~~~v~~~~~~~~~ 164 (412)
T d1ajsa_ 88 LGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTT---AGFKDIRSYRYWDTE 164 (412)
T ss_dssp HCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHH---TTCSCEEEEECEETT
T ss_pred hccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhHHHHHH---cCCeEEEeecccccc
Confidence 21 233114556667666655543332 157899999999777777666554 587755544 32222
Q ss_pred CccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCe
Q 010538 165 DNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRW 244 (508)
Q Consensus 165 ~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~ 244 (508)
.. . .|.+.++ +.+ ....++++++++++++||||.+++.+++.++++ +|++||+
T Consensus 165 ~~-~------------~d~~~~~--~~~---~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~---------la~~~~~ 217 (412)
T d1ajsa_ 165 KR-G------------LDLQGFL--SDL---ENAPEFSIFVLHACAHNPTGTDPTPEQWKQIAS---------VMKRRFL 217 (412)
T ss_dssp TT-E------------ECHHHHH--HHH---HHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHH---------HHHHHTC
T ss_pred cc-c------------ccHHHHH--HHH---HhccCCcEEEEecCCCCCcCCCCCHHHHHHHHH---------HHhhCCE
Confidence 11 0 1333333 221 113577899999999999999999888888877 6777999
Q ss_pred EEEEeccccCCCCCC----------CCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccc
Q 010538 245 MVLIDAAKGCVTQPP----------DLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIAD 312 (508)
Q Consensus 245 ~vivD~a~~~g~~~~----------d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~ 312 (508)
+|+.|.++..-...- ........+++.|++|.++.| | +|++++.....+.+........
T Consensus 218 ~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~-G~R~G~~~~~~~~~~~~~~~~~~~~-------- 288 (412)
T d1ajsa_ 218 FPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLY-NERVGNLTVVAKEPDSILRVLSQMQ-------- 288 (412)
T ss_dssp EEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCG-GGCEEEEEEECSSHHHHHHHHHHHH--------
T ss_pred EEEecHhhhhhhcCCcccchhhhhhhhhhcccccccccccccccCC-CCCccccccchhHHHHHHHHHHHHH--------
Confidence 999999986421110 001123457888999988844 5 8999998776544332210000
Q ss_pred hhhhhhccCccccccCCCCChhHHHHHHHHH------HHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecC
Q 010538 313 IDFVKRRQGVEELFEDGTASFLSIASIRHGF------NLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGT 386 (508)
Q Consensus 313 ~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al------~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~ 386 (508)
...... ...++..+..++...+ +.+.+ .++..++++.+.++.+.+.|+++.. ...+..+.+
T Consensus 289 --------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~r~~l~~~L~~~~~---~~~~~~i~~ 355 (412)
T d1ajsa_ 289 --------KIVRVT-WSNPPAQGARIVARTLSDPELFHEWTG-NVKTMADRILSMRSELRARLEALKT---PGTWNHITD 355 (412)
T ss_dssp --------HHHHTT-TSSCCSHHHHHHHHHHHSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTC---SSCCHHHHH
T ss_pred --------HHhhcc-ccccchHHHHHHHHHhcCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCC---CCCeeeecC
Confidence 000111 1222233232222222 22222 2577788889999999999988631 011222333
Q ss_pred CCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccc
Q 010538 387 YTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDI 466 (508)
Q Consensus 387 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 466 (508)
+. +.++++.+ +...+.++++++||.+.+|
T Consensus 356 ~~--------G~F~~~~l--------s~~~v~~L~~e~gV~~vpg----------------------------------- 384 (412)
T d1ajsa_ 356 QI--------GMFSFTGL--------NPKQVEYLINQKHIYLLPS----------------------------------- 384 (412)
T ss_dssp CC--------SSEEECCC--------CHHHHHHHHHTTCEECCTT-----------------------------------
T ss_pred CC--------eEEEecCC--------CHHHHHHHHHhCCEEEeCC-----------------------------------
Confidence 32 44444322 2334677778999987553
Q ss_pred cCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhh
Q 010538 467 IHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 467 ~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~ 503 (508)
.|||+.. .+.++|++++++|.+.++-+|
T Consensus 385 --------~Ri~~ag-~~~~~i~~~a~aI~~av~~~~ 412 (412)
T d1ajsa_ 385 --------GRINMCG-LTTKNLDYVATSIHEAVTKIQ 412 (412)
T ss_dssp --------SEEEGGG-CCTTTHHHHHHHHHHHHHHCC
T ss_pred --------CeEEecc-CCHHHHHHHHHHHHHHHHhcC
Confidence 2899863 357889999999999887664
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=99.74 E-value=2.6e-16 Score=160.59 Aligned_cols=355 Identities=12% Similarity=0.080 Sum_probs=227.5
Q ss_pred eeeCCCCCCCCHHHHHHHHH--HhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHH
Q 010538 43 YLDHAGATLYSELQMEAIFR--DFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVG 120 (508)
Q Consensus 43 yld~~~~~~~~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~ 120 (508)
++.-++.+-.-|++++.+.. .++..+ .|... ..+....+.+-+..++++++.|.+.. ..-.-.|++.....+.
T Consensus 68 fig~G~~~~~~p~~i~~~~~~~~~~t~y--tPyqp-E~sQG~Lq~l~e~q~~l~eltGmd~~--n~s~~~ga~a~~~~~~ 142 (437)
T d1wyua1 68 FLGGGVRSHHVPPVVQALAARGEFLTAY--TPYQP-EVSQGVLQATFEYQTMIAELAGLEIA--NASMYDGATALAEGVL 142 (437)
T ss_dssp CCCSSCCCCCCCHHHHHHHTSHHHHHCC--SCCSG-GGCHHHHHHHHHHHHHHHHHHTSSEE--CSCBSSHHHHHHHHHH
T ss_pred ccCcccCCceeCHHHHHHHhChhhhhhC--CCcch-HHHHHHHHHHHHHHHHHHHhhCCCcc--ccCchHHHHHHHHHHH
Confidence 44444444444456665542 232221 13222 22344667778899999999999765 4555677777666655
Q ss_pred hhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCC
Q 010538 121 EAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAG 199 (508)
Q Consensus 121 ~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~ 199 (508)
.+.....+..++++...||+...... .++..|++++.+|.+..... . .. .+
T Consensus 143 ~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~~~~~~~--------------------~--~~------~~ 194 (437)
T d1wyua1 143 LALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGRTP--------------------L--PE------VG 194 (437)
T ss_dssp HHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTBCC--------------------C--CC------CC
T ss_pred HHHhhhcccccccccccChHHhhhhhhhcccceeeEEeeecccccch--------------------h--hh------hc
Confidence 55444556788999999999877655 45668999999998653322 1 11 25
Q ss_pred CCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccC
Q 010538 200 DAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGY 279 (508)
Q Consensus 200 ~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~ 279 (508)
+++..|+++.+ |..|.+-++++|.+++|+ .|+++++|+....-..-.+..++|+|+++++ ||.||.
T Consensus 195 ~~~Aavmi~~P-nt~G~~ed~~~i~~~~h~------------~G~l~~~~ad~~al~~l~~Pg~~GaDi~~g~-~q~fg~ 260 (437)
T d1wyua1 195 EEVGAVVVQNP-NFLGALEDLGPFAEAAHG------------AGALFVAVADPLSLGVLKPPGAYGADIAVGD-GQSLGL 260 (437)
T ss_dssp TTEEEEEEESS-CTTSBCCCHHHHHHHHHH------------TTCEEEEECCTTGGGTBCCHHHHTCSEEEEE-CTTTTC
T ss_pred cceeEEEEccc-cccccccchHHHHHHhhh------------ccceEEeeechhhhhccccccccccceEeec-cceecc
Confidence 68899999998 557999999999999998 8998888866432222233456689999999 554443
Q ss_pred CCc-----ceEEEEechhHhhhccccccCceEEecccchhhhh--hccCccccccCCCCCh-----hHHHHHHHHHHHHH
Q 010538 280 PTG-----LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVK--RRQGVEELFEDGTASF-----LSIASIRHGFNLIN 347 (508)
Q Consensus 280 P~G-----~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~gt~~~-----~~~~~l~~al~~~~ 347 (508)
|.| .|++.+++++...+...+.|... .......|.. ......-+++.+|.|+ ........-+.++.
T Consensus 261 p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~--d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG 338 (437)
T d1wyua1 261 PMGFGGPHFGFLATKKAFVRQLPGRLVSETV--DVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALG 338 (437)
T ss_dssp CCGGGCSCCEEEEECGGGGGGCCSCCEEEEE--BTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHH
T ss_pred ccCCCcCccccccccchhhcccccccccccc--ccCCcccceeecccccccccccccccchhhHHHHHHHHHHHHhhhcC
Confidence 443 69999999886655444443110 0000111110 0111122334444443 22222233456667
Q ss_pred hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCe
Q 010538 348 SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQ 427 (508)
Q Consensus 348 ~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~ 427 (508)
..|++++.++...+++|+.+.|.+++ +++++.+... ..-+.++++. +..++.+.|.++||.
T Consensus 339 ~~GL~~ia~~a~~~A~yl~~~L~~~~------g~~~~~~~~~-------f~ef~v~~~~------~~~~i~k~L~d~G~~ 399 (437)
T d1wyua1 339 PEGLREVALKSVEMAHKLHALLLEVP------GVRPFTPKPF-------FNEFALALPK------DPEAVRRALAERGFH 399 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTST------TCEECSCSSB-------CSEEEEECSS------CHHHHHHHHHHTTCC
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhcC------CeeccCCCCe-------eeEEEEECCC------CHHHHHHHHHhCCCC
Confidence 78999999999999999999999873 6877654321 2344444322 345699999999997
Q ss_pred eccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 428 LRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 428 v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
...-.. + ...++.+.|++.-.+|.+|+|+++++|++++
T Consensus 400 ~~~~~~--~--------------------------------~~~~~~lli~~TE~~tkeeiD~~v~al~eil 437 (437)
T d1wyua1 400 GATPVP--R--------------------------------EYGENLALFAATELHEEEDLLALREALKEVL 437 (437)
T ss_dssp CCEECC--T--------------------------------TSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred CCcccc--c--------------------------------CCCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 433110 0 0125789999999999999999999998864
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.74 E-value=1.9e-16 Score=159.76 Aligned_cols=319 Identities=14% Similarity=0.037 Sum_probs=198.0
Q ss_pred hhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEE
Q 010538 79 SLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFA 157 (508)
Q Consensus 79 ~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~ 157 (508)
++....-.+.+++++|++-|... .++++++..|+..++.++ .++|++|+++..-|.......+ .+.+.|+++..
T Consensus 62 ~R~~nPt~~~LE~~la~LEgg~~----a~~~sSGMaAi~~~l~~l-~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~ 136 (398)
T d1qgna_ 62 GRYGNPTTVVLEEKISALEGAES----TLLMASGMCASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETILPKMGITATV 136 (398)
T ss_dssp GGGCCHHHHHHHHHHHHHHTCSE----EEEESCHHHHHHHHHHHH-SCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEE
T ss_pred cCCCChHHHHHHHHHHHHhCCce----EEEecCcchHHHHHHhhc-ccccccccccccccchhhhhhccccccccccccc
Confidence 33334556778899999999863 466777888999999888 7899999999877776665544 46678999988
Q ss_pred EccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccC
Q 010538 158 IDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEIS 237 (508)
Q Consensus 158 v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~ 237 (508)
++....... .+.+. .++|++|++..+.||+..+.|+++|+++||+
T Consensus 137 ~~~~~~~~~----------------~~~~~-----------~~~t~~v~~EspsNP~l~v~Di~~ia~ia~~-------- 181 (398)
T d1qgna_ 137 IDPADVGAL----------------ELALN-----------QKKVNLFFTESPTNPFLRCVDIELVSKLCHE-------- 181 (398)
T ss_dssp ECSSCHHHH----------------HHHHH-----------HSCEEEEEEESSCTTTCCCCCHHHHHHHHHH--------
T ss_pred ccccchhhh----------------hhhhc-----------cccceEEEccCccccccccchHHHHHHHHhh--------
Confidence 875332111 11122 5789999999999999999999999999998
Q ss_pred CCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhh
Q 010538 238 PFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDF 315 (508)
Q Consensus 238 ~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~ 315 (508)
+|++++||.+-+-+.. .+.-+.|+|+++.|+.|+++|-.. .|.+..+++..+.++..
T Consensus 182 ----~g~~~vVDnT~atP~~-~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~---------------- 240 (398)
T d1qgna_ 182 ----KGALVCIDGTFATPLN-QKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNL---------------- 240 (398)
T ss_dssp ----TTCEEEEECTTTCTTT-CCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHH----------------
T ss_pred ----cCCEEEecceeecccc-CCchhhCCCEEEEechhhcCcccceeehhhcchhhhhhhhhhh----------------
Confidence 9999999998764432 122344799999999999885533 46666666665544322
Q ss_pred hhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEE-EecCCCCCcccC
Q 010538 316 VKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCT-IYGTYTSEVSYH 394 (508)
Q Consensus 316 ~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~-~~~~~~~~~~~~ 394 (508)
.+...++++....+.+...++. +..+.++..+.+..+.+.|++.+ .|+ ++-|.-. ..+.
T Consensus 241 --------~~~~G~~l~p~~a~ll~rgl~T-----L~lRm~~~~~nA~~lA~~L~~hp------~V~~V~yPgL~-s~p~ 300 (398)
T d1qgna_ 241 --------HHILGGALNPNAAYLIIRGMKT-----LHLRVQQQNSTALRMAEILEAHP------KVRHVYYPGLQ-SHPE 300 (398)
T ss_dssp --------HHHHCCCCCHHHHHHHHHHGGG-----HHHHHHHHHHHHHHHHHHHHTCT------TEEEEECTTSS-SSTT
T ss_pred --------cccCCCcCCHHHHHHHHhcchH-----HHHHHHHHHHHHHHHHHHHHhCC------CeeecCCCCCC-CCcc
Confidence 1122344454444444444443 46667777888888888888764 454 4444321 0000
Q ss_pred ---------CCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCc---hHHHhhcCCChhhhhhhhhcCCccCC
Q 010538 395 ---------DTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNP---GACAKYLGLSHSDLLSNIEAGHVCWD 462 (508)
Q Consensus 395 ---------~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~---~~~~~~~~~~~s~~~~~~~~~~~~~~ 462 (508)
.-+++++|.+.+... ...++.+.|+-..+.++-|...+. +...-...++ ..-.+.+|
T Consensus 301 ~~~~~~~~~g~g~~~sf~~~g~~~---~a~~f~~~L~l~~~a~SlGg~~SLi~~p~~~th~~~~-~~~~~~~G------- 369 (398)
T d1qgna_ 301 HHIAKKQMTGFGGAVSFEVDGDLL---TTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLS-QSDRAKYG------- 369 (398)
T ss_dssp HHHHHHHCSCCCSEEEEEESSCHH---HHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSC-HHHHHTTT-------
T ss_pred hhhhhhhcCCCCceeeeeecCCHH---HHHHHHHcCCcceeeeCCCCCcceeeCcchhccccCC-HHHHHhcC-------
Confidence 127899998864211 011233333322333444433221 1100000000 01112233
Q ss_pred CccccCCCCCceEEEecCCCCCHHHHHHHHHhhh
Q 010538 463 DNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 463 ~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~ 496 (508)
..++.||+|++.-+-+|=++.|-++|+
T Consensus 370 -------i~~~liRlSvGlEd~eDLi~Dl~~AL~ 396 (398)
T d1qgna_ 370 -------IMDNLVRFSFGVEDFDDLKADILQALD 396 (398)
T ss_dssp -------CCSSEEEEECCSSCHHHHHHHHHHHHH
T ss_pred -------CCcCEEEEEeccCCHHHHHHHHHHHHh
Confidence 247899999998665555555555544
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=1e-17 Score=170.82 Aligned_cols=353 Identities=13% Similarity=0.048 Sum_probs=195.8
Q ss_pred hHHHHHHhhccCC-CCCeeeeCC------CCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc-
Q 010538 26 IDQIRATEFKRLE-NGTVYLDHA------GATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF- 97 (508)
Q Consensus 26 ~~~~r~~~f~~~~-~~~iyld~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~- 97 (508)
+-.+.+ .|.... ++.|.|.-| +..++++.+.++..+ ...+. .. ..|....+ ..+.|+++++++
T Consensus 13 i~~~~~-~~~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~-~~~~~--~~-~~Y~p~~G----~~~lR~aia~~~~ 83 (396)
T d2q7wa1 13 ILGLAD-LFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQY-LLENE--TT-KNYLGIDG----IPEFGRCTQELLF 83 (396)
T ss_dssp ----------------CEESSCCSCCCTTSCCCCCHHHHHHHHH-HHHHC--CC-CCCCCTTC----CHHHHHHHHHHHH
T ss_pred HHHHHH-HHhccCCCCcEEeeCCCccCCCCCCCCCHHHHHHHHH-HhhCC--CC-CCCCCCcC----CHHHHHHHHHHHH
Confidence 445554 565431 445655544 445556777666533 33221 11 12332222 445566666654
Q ss_pred ---CC--CCCCceEEEcCChHHHHHHHHhhc-CCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCcccccc
Q 010538 98 ---NA--SMKDYKCIFTSGATAALKLVGEAF-PWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSE 171 (508)
Q Consensus 98 ---~~--~~~~~~i~~t~g~t~al~~~~~~l-~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~ 171 (508)
+. +++...++.|.+++.++.++...+ ...+|+.|+++...++++..... ..|++++.+|...+.....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~---~~g~~~~~~~~~~~~~~~~--- 157 (396)
T d2q7wa1 84 GKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFN---SAGLEVREYAYYDAENHTL--- 157 (396)
T ss_dssp CTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHH---HTTCEEEEEECEETTTTEE---
T ss_pred hhcCCcccccceeeeccchHHHHHHHHHHHHhhcccceEEEEecCCCccchHHHH---HcCCeeEeccccccccccc---
Confidence 22 222113445666666665544433 15789999999877777765554 4599999999864332100
Q ss_pred ccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEecc
Q 010538 172 SLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAA 251 (508)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a 251 (508)
+...+. +.+ ....++++++++++++||||.+++.+++.++++ +|++++++||.|.+
T Consensus 158 ----------~~~~~~--~~~---~~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~---------la~~~~~~ii~De~ 213 (396)
T d2q7wa1 158 ----------DFDALI--NSL---NEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQ---------LSVEKGWLPLFDFA 213 (396)
T ss_dssp ----------CHHHHH--HHH---TTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHH---------HHHHHTCEEEEEES
T ss_pred ----------ccchHH--HHH---HHhccCcEEEEecCCcCCcCeecCHHHHHHHHH---------HHhcCCeEEEEecc
Confidence 122221 111 223567899999999999999999998888877 67779999999999
Q ss_pred ccCCCCC----CCC-----CCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhcc
Q 010538 252 KGCVTQP----PDL-----SKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQ 320 (508)
Q Consensus 252 ~~~g~~~----~d~-----~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~ 320 (508)
+..-.-. ... ...+..+++.|++|.++ .+| +|++++.+..++..........
T Consensus 214 Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~-~~G~R~G~~~~~~~~~~~~~~~~~~~~---------------- 276 (396)
T d2q7wa1 214 YQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFG-LYNERVGACTLVAADSETVDRAFSQMK---------------- 276 (396)
T ss_dssp CTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTT-CGGGCCEEEEEECSSHHHHHHHHHHHH----------------
T ss_pred ccccccCCccCchHhhhhhhhccccccccccccccc-ccCCCccccccchhHHHHHHHhhhhhh----------------
Confidence 8642211 000 01134577889999888 446 8999998876654332210000
Q ss_pred CccccccCCCCChhHHHHHHHHHH------HHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccC
Q 010538 321 GVEELFEDGTASFLSIASIRHGFN------LINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYH 394 (508)
Q Consensus 321 ~~~~~~~~gt~~~~~~~~l~~al~------~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~ 394 (508)
...+.....++..+..++...+. .+. ..++.++++++++++.+.+.|+++.. ...+..+.++.
T Consensus 277 -~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~r~~l~~~L~~~~~---~~~~~~~~~~~------ 345 (396)
T d2q7wa1 277 -AAIRANYSNPPAHGASVVATILSNDALRAIWE-QELTDMRQRIQRMRQLFVNTLQEKGA---NRDFSFIIKQN------ 345 (396)
T ss_dssp -HHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHH-HHHHHC-CHHHHHHHHHHHHHHHTTC---CSCCTHHHHCC------
T ss_pred -hhhhccccCCCHHHHHHHHHHhcCchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCC---CCCcceecCCC------
Confidence 00111122233333333322221 111 23677788889999999999988621 01122333332
Q ss_pred CCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCce
Q 010538 395 DTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGA 474 (508)
Q Consensus 395 ~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (508)
+.++++.+ +...+.++++++||.+.+| +
T Consensus 346 --G~F~~~~l--------~~e~~~~L~~e~gV~~~~g-----------------------------------------~- 373 (396)
T d2q7wa1 346 --GMFSFSGL--------TKEQVLRLREEFGVYAVAS-----------------------------------------G- 373 (396)
T ss_dssp --SSEEECCC--------CHHHHHHHHHHHCEECCTT-----------------------------------------C-
T ss_pred --eEEEeeCC--------CHHHHHHHHHhCCEEECCC-----------------------------------------C-
Confidence 55665433 2234667778899986542 2
Q ss_pred EEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 475 IRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 475 iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
|||+... +.++|++++++|...+
T Consensus 374 -Ri~~a~l-~~~~i~~~~~ai~~v~ 396 (396)
T d2q7wa1 374 -RVNVAGM-TPDNMAPLCEAIVAVL 396 (396)
T ss_dssp -EEEGGGC-CTTTHHHHHHHHHHHC
T ss_pred -EEEecCC-CHHHHHHHHHHHHHhC
Confidence 9998743 4678999999887653
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=1.8e-18 Score=176.59 Aligned_cols=300 Identities=13% Similarity=0.031 Sum_probs=181.0
Q ss_pred HHHHHHHHHHHcCC------CCCCceEEEcCChHHH----HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeE
Q 010538 86 VRAAREQVLDYFNA------SMKDYKCIFTSGATAA----LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAA 155 (508)
Q Consensus 86 ~~~~r~~la~~~~~------~~~~~~i~~t~g~t~a----l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v 155 (508)
..+.|+.+++++.- +++ .|+.+.+++.+ +.+++..+ ..+|++|++++..++++....+ ..|.++
T Consensus 72 ~~~lR~aia~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~l~~~~~~~-~~pgd~Vlv~~P~y~~y~~~~~---~~G~~~ 145 (397)
T d3tata_ 72 LNCYRHAIAPLLFGADHPVLKQQ--RVATIQTLGGSGALKVGADFLKR-YFPESGVWVSDPTWENHVAIFA---GAGFEV 145 (397)
T ss_dssp CHHHHHHHHHHHTCSSCHHHHTT--CEEECCBSHHHHHHHHHHHHHHH-HCSSCCCEECSSCCTTHHHHHH---TTTCCC
T ss_pred CHHHHHHHHHHHhhccCCcCCcC--cEEEecCchhHHHHHHHHHHhhh-cCCCCcceecccCccccHHHHH---HcCCEE
Confidence 56677888877652 344 57766655553 44555555 5789999999988877766654 459999
Q ss_pred EEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccc
Q 010538 156 FAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILE 235 (508)
Q Consensus 156 ~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~ 235 (508)
+.+|++.++... .+.+.+. +.+ ....++++++++++++||||.+++.+++.++++
T Consensus 146 ~~v~~~~~~~~~-------------~~~~~~~--~~~---~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~------- 200 (397)
T d3tata_ 146 STYPWYDEATNG-------------VRFNDLL--ATL---KTLPARSIVLLHPCCHNPTGADLTNDQWDAVIE------- 200 (397)
T ss_dssp EECCCCCTTTSS-------------CCHHHHH--HHH---TTCCSSCCCEECSSSCSSSCCCCCHHHHHHHHH-------
T ss_pred EEEecchhhccc-------------cchHHHH--HHh---hhcccccEEEEecCCCCCCCeeCCHHHHHHHHH-------
Confidence 999987644321 1233333 222 223567899999999999999999998888877
Q ss_pred cCCCCCCCeEEEEeccccCCCCCC-----C----CCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCc
Q 010538 236 ISPFSKGRWMVLIDAAKGCVTQPP-----D----LSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGG 304 (508)
Q Consensus 236 ~~~~~~~g~~vivD~a~~~g~~~~-----d----~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~ 304 (508)
+|++++++++.|.++..-.-.. . ......-+++.|++|.++ .+| +|++++....++.........
T Consensus 201 --~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~-~~G~RiG~~~~~~~~~~~~~~~~~~~- 276 (397)
T d3tata_ 201 --ILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFS-LYGERVGGLSVMCEDAEAAGRVLGQL- 276 (397)
T ss_dssp --HHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHT-BTTTCCBCCEEECSSTTHHHHHHHHH-
T ss_pred --HHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCccccc-ccCccccccccchhHHHHHHHHHHHH-
Confidence 6777999999999986422110 0 011123478889999988 557 899999877654333221000
Q ss_pred eEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHH---HHH--hcChHHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 010538 305 TVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFN---LIN--SLTVPAICRHIASLGMYVRKVLLSLRHENGAD 379 (508)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~---~~~--~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~ 379 (508)
. ........+.+...+ .++...+. +.. ...++.+++++.++++.+.+.|.+... ..
T Consensus 277 -----------~----~~~~~~~~~~~~~~q-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~---~~ 337 (397)
T d3tata_ 277 -----------K----ATVRRNYSSPPNFGA-QVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTEMP---ER 337 (397)
T ss_dssp -----------H----HHTTTTTSSCCSHHH-HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCT---TS
T ss_pred -----------H----HHhhcccccccHHHH-HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CC
Confidence 0 001111122233222 22222211 111 112455666677777777777765421 01
Q ss_pred eEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCc
Q 010538 380 VCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHV 459 (508)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 459 (508)
++.++.++. +.++|+.++ ...+.++++++||.+.+|
T Consensus 338 ~~~~~~~~~--------G~F~~~~ls--------~e~~~~L~~e~~V~l~~g---------------------------- 373 (397)
T d3tata_ 338 NFDYLLNQR--------GMFSYTGLS--------AAQVDRLREEFGVYLIAS---------------------------- 373 (397)
T ss_dssp CTTHHHHCC--------SSBCCCCCC--------HHHHHHHTTTTCEECCSS----------------------------
T ss_pred ceEEEcCCC--------ceEEecCcC--------HHHHHHHHHhCCEEeCCC----------------------------
Confidence 123333332 566665442 234666667889987653
Q ss_pred cCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 460 CWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 460 ~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
.|||+.. .+.++|++++++|.+.+
T Consensus 374 ---------------~Ri~~a~-~~~~~i~~~~~ai~~v~ 397 (397)
T d3tata_ 374 ---------------GRMCVAG-LNTANVQRVAKAFAAVM 397 (397)
T ss_dssp ---------------SCCBTTS-CCTTTHHHHHHHHHHHC
T ss_pred ---------------CEEEecc-CCHHHHHHHHHHHHHhC
Confidence 3888764 46788999999987653
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=99.72 E-value=3e-17 Score=168.28 Aligned_cols=360 Identities=12% Similarity=0.032 Sum_probs=201.9
Q ss_pred chHHHHHHhhccCC-CCCeeeeCC------CCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc
Q 010538 25 SIDQIRATEFKRLE-NGTVYLDHA------GATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF 97 (508)
Q Consensus 25 ~~~~~r~~~f~~~~-~~~iyld~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~ 97 (508)
.+-.+.+ +|.... ++.|.|.-| +..++.+.|.++ .+....+.. ....|....+ ..+.|+.+++++
T Consensus 15 ~i~~~~~-~~~~d~~~~kInL~iG~~~d~~g~~~~~~~V~~A-~~~l~~~~~--~~~~Y~p~~G----~~~lr~aia~~~ 86 (412)
T d1yaaa_ 15 ALFGIKQ-RYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAA-EKLIHNDSS--YNHEYLGITG----LPSLTSNAAKII 86 (412)
T ss_dssp TTHHHHH-HHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHH-HHHHHTCTT--CCCCCCCTTC----CHHHHHHHHHHH
T ss_pred hHHHHHH-HHhcCCCCCcEEeecCCCcCCCCCCCCcHHHHHH-HHHHHhCcc--cCCCCCCCCC----CHHHHHHHHHHH
Confidence 4667777 887652 346766544 334445666554 343322111 1112332222 345566666654
Q ss_pred CC------CCCCceE-EEcCChHHHHHHHH--hhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccc
Q 010538 98 NA------SMKDYKC-IFTSGATAALKLVG--EAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDG 168 (508)
Q Consensus 98 ~~------~~~~~~i-~~t~g~t~al~~~~--~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~ 168 (508)
.- ..+. .+ +.+.+++.++.++. ..+ ..+|+.|++++..++.+..+.. ..|.+++.+|...+....
T Consensus 87 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~gd~Vlip~P~~~~y~~~~~---~~g~~~~~~~~~~~~~~~- 160 (412)
T d1yaaa_ 87 FGTQSDALQEDR-VISVQSLSGTGALHISAKFFSK-FFPDKLVYLSKPTWANHMAIFE---NQGLKTATYPYWANETKS- 160 (412)
T ss_dssp HCTTCHHHHTTC-EEEEEEEHHHHHHHHHHHHHHH-HCTTCCEEEEESCCTTHHHHHH---TTTCCEEEEECEETTTTE-
T ss_pred hcccCccccccc-eeEEecccchhHHHHHHHHHhc-cCCCCEEecccccCchhHHHHH---HcCCceeccccccccccc-
Confidence 31 2221 22 22234444443333 223 4689999999988877766554 459999999975433221
Q ss_pred cccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEE
Q 010538 169 LSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLI 248 (508)
Q Consensus 169 l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~viv 248 (508)
++.+.+. +.+ ...+++++++++++++||||.+++.+++.++++ +|++++++++.
T Consensus 161 ------------~~~~~~~--~~~---~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~---------~a~~~~~~ii~ 214 (412)
T d1yaaa_ 161 ------------LDLNGFL--NAI---QKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVD---------AIASKNHIALF 214 (412)
T ss_dssp ------------ECHHHHH--HHH---HHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHH---------HHHHTTCEEEE
T ss_pred ------------ccchhhh--ccc---ccCCCceEEEEecCCCCCccccCCHHHHHHHHh---------hhccCCEEEee
Confidence 1233333 222 112467789999999999999999888877776 66679999999
Q ss_pred eccccCCCCCC----C---------CCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccch
Q 010538 249 DAAKGCVTQPP----D---------LSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADI 313 (508)
Q Consensus 249 D~a~~~g~~~~----d---------~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~ 313 (508)
|.++..-...- . ....+.-+++.|++|.++ .+| +||++++++.+..+.........
T Consensus 215 De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~-~~G~RiG~~~~~~~~~~~~~~~~~~~~~-------- 285 (412)
T d1yaaa_ 215 DTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAG-MYGERVGCFHLALTKQAQNKTIKPAVTS-------- 285 (412)
T ss_dssp EESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSC-CGGGCEEEEEEECCSCTTHHHHHHHHHH--------
T ss_pred cceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCccc-cCcCceEEEEEchhhhhhHHHHHHHHHH--------
Confidence 99986321110 0 111123488889999998 557 89999998764433211000000
Q ss_pred hhhhhccCccccccCCCCChhHHHHHHHHHH------HHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCC
Q 010538 314 DFVKRRQGVEELFEDGTASFLSIASIRHGFN------LINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTY 387 (508)
Q Consensus 314 ~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~------~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~ 387 (508)
... ...+....+++...+ ..+...+. .+.+ .++.+++++++.++.+.+.|++... ...+..+.+.
T Consensus 286 ~~~----~~~~~~~~~~~~~~q-~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~g~---~~~~~~~~~~ 356 (412)
T d1yaaa_ 286 QLA----KIIRSEVSNPPAYGA-KIVAKLLETPELTEQWHK-DMVTMSSRITKMRHALRDHLVKLGT---PGNWDHIVNQ 356 (412)
T ss_dssp HHH----HHHHTTTSSCCHHHH-HHHHHHHHSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTC---SSCCTHHHHC
T ss_pred HHH----HHHHHHhcCCChHHH-HHHHHHhcChHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCC---CCCCceeCCC
Confidence 000 000111122222222 22222221 1111 2577788888999999999987621 0112233333
Q ss_pred CCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCcccc
Q 010538 388 TSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDII 467 (508)
Q Consensus 388 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 467 (508)
+ +.++++.+ +...+.++++++||.+.+|
T Consensus 357 g--------G~F~~~~l--------s~e~~~~L~~e~~V~~~~g------------------------------------ 384 (412)
T d1yaaa_ 357 C--------GMFSFTGL--------TPQMVKRLEETHAVYLVAS------------------------------------ 384 (412)
T ss_dssp C--------SSEEECCC--------CHHHHHHHHHHHCEECCTT------------------------------------
T ss_pred c--------eEEEecCc--------CHHHHHHHHHhCCEEECCC------------------------------------
Confidence 2 44544322 2234666678889986442
Q ss_pred CCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 468 HGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 468 ~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
.|||++. .+.++|++++++|.+.++|.
T Consensus 385 -------~Ris~~g-~~~~~i~~l~~ai~~v~k~~ 411 (412)
T d1yaaa_ 385 -------GRASIAG-LNQGNVEYVAKAIDEVVRFY 411 (412)
T ss_dssp -------SEEEGGG-CCTTTHHHHHHHHHHHHHHC
T ss_pred -------CEEEecc-CCHHHHHHHHHHHHHHHHhh
Confidence 4898864 35678999999999998874
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.71 E-value=1.4e-15 Score=153.44 Aligned_cols=318 Identities=14% Similarity=0.048 Sum_probs=203.8
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEEcc
Q 010538 82 TCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDV 160 (508)
Q Consensus 82 ~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~ 160 (508)
...-.+.+.+.++++-|++. .+..+++..|+..++.++ .++|++|+++..-|........ .+.+.|+++..++.
T Consensus 57 ~nPT~~~le~~la~LEg~~~----a~~~sSGmaAi~~~~l~l-~~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~ 131 (394)
T d1e5ea_ 57 GNPTVSNLEGKIAFLEKTEA----CVATSSGMGAIAATVLTI-LKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINT 131 (394)
T ss_dssp CCHHHHHHHHHHHHHHTCSE----EEEESSHHHHHHHHHHHH-CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT
T ss_pred CCHHHHHHHHHHHHHhCCcc----eeeeccchHHHHHHHHhh-cccccccccccceeehhhHhHHHHhhccceeeeccCC
Confidence 34456778899999999864 355667777998888888 6899999999888877666544 67889999999987
Q ss_pred CCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCC
Q 010538 161 EEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFS 240 (508)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~ 240 (508)
.. ++.++ +++ +++|++|++..+.||+..+.|++++.+.+++
T Consensus 132 ~d--------------------~~~~~--~~i------~~~t~lv~~Etp~NP~l~v~Di~~~~~~~~~----------- 172 (394)
T d1e5ea_ 132 AI--------------------PGEVK--KHM------KPNTKIVYFETPANPTLKIIDMERVCKDAHS----------- 172 (394)
T ss_dssp TS--------------------TTHHH--HHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHT-----------
T ss_pred CC--------------------HHHHH--Hhh------cccccEEEEeccCCcceeeehhhhhhhcccc-----------
Confidence 53 34445 333 6789999999999999999999999886654
Q ss_pred CCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhh
Q 010538 241 KGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKR 318 (508)
Q Consensus 241 ~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~ 318 (508)
++|++++||.+-+-+.. .+.-+.|+|+++.|..|+++|-.. .|+++.+++.....+...
T Consensus 173 ~~g~~vvvDnT~atP~~-~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~------------------ 233 (394)
T d1e5ea_ 173 QEGVLVIADNTFCSPMI-TNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVG------------------ 233 (394)
T ss_dssp STTCEEEEECTTTCTTT-CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTC------------------
T ss_pred ccCeEEEecCcccCccc-CCchhcCCCEEEechhhhcCCCcccccccccchhhHHHHHHHHH------------------
Confidence 27899999998764432 222345899999999999984432 577888777654432110
Q ss_pred ccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceE-EEecCCCCCccc----
Q 010538 319 RQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVC-TIYGTYTSEVSY---- 393 (508)
Q Consensus 319 ~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~-~~~~~~~~~~~~---- 393 (508)
.++...++++....+-+...++. +..+.++..+.+..+.+.|++.+ .| +++-|.-.. .+
T Consensus 234 ----~~~~~G~~lsp~~a~ll~rgl~T-----L~lRm~r~~~nA~~lA~~L~~hp------~V~~V~yPgl~s-~p~~~~ 297 (394)
T d1e5ea_ 234 ----IKDITGSVISPHDAWLITRGLST-----LNIRMKAESENAMKVAEYLKSHP------AVEKVYYPGFED-HEGHDI 297 (394)
T ss_dssp ----CCCCCCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHTCT------TEEEEECTTCSS-STTHHH
T ss_pred ----HHHhhCCCCChHHHHHHHhhchh-----HHHHHHHHHHHHHHHHHHHhhcC------CccEEeCCCccc-ccchhh
Confidence 11122344555555555545543 46667777888888888888874 45 455443210 00
Q ss_pred -----CCCCceEEEEeeCCCCCccCHHHHHHHHhhCCC---eeccCCCCCchHHHhhcC---CChhhhhhhhhcCCccCC
Q 010538 394 -----HDTGSMVSFNLKRPDGSWFGYREVEKLASLSGI---QLRTGCFCNPGACAKYLG---LSHSDLLSNIEAGHVCWD 462 (508)
Q Consensus 394 -----~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI---~v~~g~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~~~ 462 (508)
..-+++++|.+.+.. ....+.++.-.+ .++-|..-+. -.+++.- .-+..-.+.+|.
T Consensus 298 ~~~~~~~~G~~~sf~~~~~~------~~a~~f~~~l~l~~~a~SlGg~eSL-i~~p~~~th~~~~~~~r~~~Gi------ 364 (394)
T d1e5ea_ 298 AKKQMRMYGSMITFILKSGF------EGAKKLLDNLKLITLAVSLGGCESL-IQHPASMTHAVVPKEEREAAGI------ 364 (394)
T ss_dssp HHHHCSSCCSEEEEEETTHH------HHHHHHHHTCSSSEESSCCCSSSCE-EECGGGTTTTTSCHHHHHHTTC------
T ss_pred hhcccccCCCeeeeeccCCH------HHHHHHHHhCCccceeeccCCccce-eECccccccccCCHHHHHhcCC------
Confidence 012788999875531 113344444333 3333322111 0000000 001111223333
Q ss_pred CccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 463 DNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 463 ~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
.++.||+|++.-+.+|=++.|-++|+.++
T Consensus 365 --------~~~liRlSVGlEd~eDLi~Dl~qAl~~l~ 393 (394)
T d1e5ea_ 365 --------TDGMIRLSVGIEDADELIADFKQGLDALL 393 (394)
T ss_dssp --------CTTEEEEECCSSCHHHHHHHHHHHHHHHH
T ss_pred --------CcCEEEEEeccCCHHHHHHHHHHHHHHhh
Confidence 47899999998777777777777766554
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.71 E-value=2.3e-16 Score=158.40 Aligned_cols=315 Identities=13% Similarity=0.041 Sum_probs=193.5
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEEccC
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDVE 161 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~~ 161 (508)
..-.+.+++.+|.+-|++.. +.++++..|+.+++ ++ .++|++|+++..-|.......+ .+.+.|+++..++..
T Consensus 48 nPt~~~le~~la~LE~~~~a----~~fsSGMaAisall-~l-l~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~ 121 (380)
T d1ibja_ 48 NPTRDALESLLAKLDKADRA----FCFTSGMAALSAVT-HL-IKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT 121 (380)
T ss_dssp CHHHHHHHHHHHHHHTCSEE----EEESSHHHHHHHHH-TT-SCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT
T ss_pred ChHHHHHHHHHHHHcCCceE----EehhhHHHHHHHHH-Hh-hCCCCEEEEEecccccccchhhhhhccccccccccCcc
Confidence 33467788999999998643 44555566887554 45 5889999999888877766554 356689999988754
Q ss_pred CccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCC
Q 010538 162 EAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK 241 (508)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~ 241 (508)
. ++.++ ++ ++++|++|++..+.||+..+.|+++|+++||+
T Consensus 122 ~--------------------~~~~~--~a------i~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~------------ 161 (380)
T d1ibja_ 122 K--------------------LDEVA--AA------IGPQTKLVWLESPTNPRQQISDIRKISEMAHA------------ 161 (380)
T ss_dssp S--------------------HHHHH--HH------CCSSEEEEEECSSCTTTCCCCCHHHHHHHHHT------------
T ss_pred h--------------------HHHHH--HH------hccCccEEEeccccccccccccHHHHHHHHHH------------
Confidence 2 45556 33 36799999999999999999999999999998
Q ss_pred CCeEEEEeccccCCC--CCCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhH-hhhccccccCceEEecccchhhh
Q 010538 242 GRWMVLIDAAKGCVT--QPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAA-KLLKNTYFSGGTVAASIADIDFV 316 (508)
Q Consensus 242 ~g~~vivD~a~~~g~--~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~-~~l~~~~~g~~~~~~~~~~~~~~ 316 (508)
+|++++||.+.+.+. .|+ +.|+|+++.|..|+++|-.. .|.++.+++.. +.+...
T Consensus 162 ~g~~~vVDnT~atP~~~~Pl---~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~----------------- 221 (380)
T d1ibja_ 162 QGALVLVDNSIMSPVLSRPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFL----------------- 221 (380)
T ss_dssp TTCEEEEECTTTCTTTCCGG---GTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHH-----------------
T ss_pred cCCeEEeecccccccccccc---ccCCCEEEecccceeccccCccccccccchhhHHHHHHhh-----------------
Confidence 999999999976543 344 34799999999999884322 57777775542 222211
Q ss_pred hhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceE-EEecCCCCC-----
Q 010538 317 KRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVC-TIYGTYTSE----- 390 (508)
Q Consensus 317 ~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~-~~~~~~~~~----- 390 (508)
++...++++....+.+...++. +..+.++..+.+..+.+.|++.+ .| +++-|.-..
T Consensus 222 -------~~~~G~~l~p~~a~ll~rgl~T-----l~lRm~~~~~nA~~lA~~L~~hp------~V~~V~yPgl~s~p~~~ 283 (380)
T d1ibja_ 222 -------QNSEGSGLAPFDCWLCLRGIKT-----MALRIEKQQENARKIAMYLSSHP------RVKKVYYAGLPDHPGHH 283 (380)
T ss_dssp -------HHHTTCBCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHTCT------TCCEEECTTSTTSTTHH
T ss_pred -------ccccCCcCCHHHHHHHHhcchh-----hhhhHHHHHHHHHHHHHHHHhCC------CeeEEeccccccCcccc
Confidence 1122334555555555545443 56667777888888888888764 34 343332110
Q ss_pred ---cccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCcccc
Q 010538 391 ---VSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDII 467 (508)
Q Consensus 391 ---~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 467 (508)
-.-..-+++++|.+.+.+. ...+.+.|+-..+.++-|...+.- .+++. ..|+. ...+.+.-
T Consensus 284 ~a~~~~~~~g~~~s~~~~~~~~----a~~f~d~l~l~~~a~SlG~~~SLi-~~p~~-~th~~----------~~~e~r~~ 347 (380)
T d1ibja_ 284 LHFSQAKGAGSVFSFITGSVAL----SKHLVETTKYFSIAVSFGSVKSLI-SMPCF-MSHAS----------IPAEVREA 347 (380)
T ss_dssp HHTTTCSCCCSEEEEECSCHHH----HHHHHHHCSSSEECSCCCSSSCEE-ECTTT-TTTCS----------CCSSSSSS
T ss_pred ccccccccccccccccccHHHH----HHHHHHhCCcCeEeeccCCccccc-cCchh-hhhhc----------CCHHHHHH
Confidence 0001235777886653211 112333333223333444321110 00000 00000 11122222
Q ss_pred CCCCCceEEEecCCCCCHHHHHHHHHhhhh
Q 010538 468 HGKPTGAIRVSFGYMSTFEDAKVNRCSSFD 497 (508)
Q Consensus 468 ~~~~~~~iRis~~~~~t~eev~~l~~~~~~ 497 (508)
.+..++.||||++.-+.++=++.|-++++.
T Consensus 348 ~Gi~~~lvRlSvGlE~~eDLi~Dl~qAl~~ 377 (380)
T d1ibja_ 348 RGLTEDLVRISAGIEDVDDLISDLDIAFKT 377 (380)
T ss_dssp SSCCTTCEEEECCSSCHHHHHHHHHHHHHS
T ss_pred cCCCcCeEEEEeccCCHHHHHHHHHHHHHh
Confidence 344578999999987666666666666553
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.71 E-value=6.3e-16 Score=152.90 Aligned_cols=308 Identities=15% Similarity=0.087 Sum_probs=193.7
Q ss_pred HHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEEccCCccCc
Q 010538 88 AAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDVEEAVDN 166 (508)
Q Consensus 88 ~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~~~~~~~ 166 (508)
++++.+|.+-|++. .+.++++..|+..++.++ .++|++|+++..-|.......+ .+++.|+++..++..+
T Consensus 2 aLE~~la~Leg~~~----a~~~sSGMaAi~~~l~~l-l~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~d---- 72 (331)
T d1pffa_ 2 ALEGKIAKLEHAEA----CAATASGMGAIAASVWTF-LKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAV---- 72 (331)
T ss_dssp HHHHHHHHHHTCSE----EEEESSHHHHHHHHHHHH-CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTS----
T ss_pred HHHHHHHHHhCCCe----EEEECCHHHHHHHHHHHH-hCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEecccc----
Confidence 35688999998863 455677788998888887 6899999999887766665544 5788999999987652
Q ss_pred cccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEE
Q 010538 167 DGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMV 246 (508)
Q Consensus 167 ~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~v 246 (508)
++.++ ++ +.++|++|++..+.||+..+.|++.+.+++++ ++|+++
T Consensus 73 ----------------~~~~~--~~------i~~~t~~i~~Es~~np~~~v~d~~~~~~~~a~-----------~~~~~~ 117 (331)
T d1pffa_ 73 ----------------PGNIE--KH------LKPNTRIVYFETPANPTLKVIDIEDAVKQARK-----------QKDILV 117 (331)
T ss_dssp ----------------TTHHH--HT------CCTTEEEEEEESSCTTTCCCCCHHHHHHHHTT-----------SSSCEE
T ss_pred ----------------hhhHh--hh------cccccceeeeecccccccccccchhhhhhhhc-----------ccCceE
Confidence 44556 33 36789999999999999999999999988643 289999
Q ss_pred EEeccccC--CCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCc
Q 010538 247 LIDAAKGC--VTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGV 322 (508)
Q Consensus 247 ivD~a~~~--g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~ 322 (508)
+||.+-+- ...|+ +.|+|+++.|..|+++|-.. .|.++.+++.....+...
T Consensus 118 vVDnT~atp~~~~pl---~~GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~---------------------- 172 (331)
T d1pffa_ 118 IVDNTFASPILTNPL---DLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQG---------------------- 172 (331)
T ss_dssp EEECTTTHHHHCCGG---GGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTC----------------------
T ss_pred Eeecccccccccccc---ccCCCEEEecchhhcCCCCccccccccccccchhhhhhhh----------------------
Confidence 99998763 33444 34699999999999884322 577777766543322110
Q ss_pred cccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceE-EEecCCCCCccc--------
Q 010538 323 EELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVC-TIYGTYTSEVSY-------- 393 (508)
Q Consensus 323 ~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~-~~~~~~~~~~~~-------- 393 (508)
.+....+.++....+.+...++.+ ..+.++..+.+..+.+.|++.+ .+ +++-|.-+. .+
T Consensus 173 ~~~~~G~~l~p~~a~ll~rgl~Tl-----~~Rm~~~~~nA~~lA~~L~~hp------~V~~V~yPgl~s-~p~~~~~~~~ 240 (331)
T d1pffa_ 173 IKDITGAIISPHDAWLITRGTLTL-----DMRVKRAAENAQKVAEFLHEHK------AVKKVYYPGLPD-HPGHEIAKKQ 240 (331)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHCT------TCCCEECTTSTT-STTHHHHHHH
T ss_pred hhhccCCCCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhhCC------cEEeeccccccC-ccHHHHHhhc
Confidence 111123345555566566666654 4455666677777777777663 34 344332110 00
Q ss_pred -CCCCceEEEEeeCCCCCccCHHHHHHHHhhCC---CeeccCCCCCc---hHHHhhcCCChhhhhhhhhcCCccCCCccc
Q 010538 394 -HDTGSMVSFNLKRPDGSWFGYREVEKLASLSG---IQLRTGCFCNP---GACAKYLGLSHSDLLSNIEAGHVCWDDNDI 466 (508)
Q Consensus 394 -~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~g---I~v~~g~~~~~---~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 466 (508)
..-+++++|.+++.+ ...+.++.-. +.++-|...+. +.....-.++ ....+.+|
T Consensus 241 ~~~~g~l~sf~l~~~~-------~~~~f~d~l~lf~~~~SlG~~~SLi~~p~~~~h~~~~-~e~~~~~G----------- 301 (331)
T d1pffa_ 241 MKMFGSMIAFDVDGLE-------KAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVP-KEEREAAG----------- 301 (331)
T ss_dssp CSSCCSEEEEECSSHH-------HHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSC-HHHHHHTT-----------
T ss_pred ccccCcccceeeccHH-------HHHHHHHhCCcceecccCCCCceeEeCccccccccCC-HHHHHhcC-----------
Confidence 113789999986421 2334444333 33444432221 1110000000 11122233
Q ss_pred cCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 467 IHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 467 ~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
..++.||+|++.-+.+|=++.+-++|+.+
T Consensus 302 ---i~~~liRlsvGlE~~~DLi~Dl~~AL~~i 330 (331)
T d1pffa_ 302 ---LTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp ---CCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred ---CCcCeEEEEeeeCCHHHHHHHHHHHHHHh
Confidence 24789999999877666666666665543
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=7.3e-16 Score=154.83 Aligned_cols=310 Identities=12% Similarity=0.051 Sum_probs=194.5
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEEccC
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDVE 161 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~~ 161 (508)
..-.+.+++.+|++-|.+. .+.++++..|+..++.++ .++|++|+++..-|........ .+.+.|.++..++..
T Consensus 49 nPt~~~le~~la~LEgg~~----a~~~sSGMaAi~~~l~~l-~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~~ 123 (384)
T d1cs1a_ 49 NPTRDVVQRALAELEGGAG----AVLTNTGMSAIHLVTTVF-LKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQG 123 (384)
T ss_dssp CHHHHHHHHHHHHHHTCSE----EEEESSHHHHHHHHHHHH-CCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTT
T ss_pred CHHHHHHHHHHHHHhCCCc----eEEecChHHHHHHHHhhc-ccccceecccccccchhhhhhhhhhcccccccccccCC
Confidence 3446778899999999864 466677777999888888 6899999999877766555544 455678888877653
Q ss_pred CccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCC
Q 010538 162 EAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK 241 (508)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~ 241 (508)
+ .+.++ ++ +.++|++|++..+.||+..+.|+++|.+++|+
T Consensus 124 d--------------------~~~~~--~~------~~~~t~~v~~EspsNP~l~v~Di~~i~~ia~~------------ 163 (384)
T d1cs1a_ 124 D--------------------EQALR--AA------LAEKPKLVLVESPSNPLLRVVDIAKICHLARE------------ 163 (384)
T ss_dssp C--------------------HHHHH--HH------HHTCCSEEEEECSCTTTCCCCCHHHHHHHHHH------------
T ss_pred C--------------------HHHHH--hh------ccccccEEEEeccccccceeccHHHHhhhhhh------------
Confidence 2 34444 22 25789999999999999999999999999998
Q ss_pred CCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhH-hhhccccccCceEEecccchhhhhh
Q 010538 242 GRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAA-KLLKNTYFSGGTVAASIADIDFVKR 318 (508)
Q Consensus 242 ~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~-~~l~~~~~g~~~~~~~~~~~~~~~~ 318 (508)
+|++++||.+-+.+.. ....+.|+|+++.|+.|+++|-.. .|+++.+++.. +.+...
T Consensus 164 ~g~~~vVDNT~atP~~-~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~------------------- 223 (384)
T d1cs1a_ 164 VGAVSVVDNTFLSPAL-QNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWW------------------- 223 (384)
T ss_dssp TTCEEEEECTTTCTTT-CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHH-------------------
T ss_pred cCcEEEEeccccCccc-ccccccCCCEEEEccccccccCCCcccccccCCchhhhhhhhhh-------------------
Confidence 9999999999755432 222335799999999999884422 57677765443 222211
Q ss_pred ccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceE-EEecCCCCCcccC---
Q 010538 319 RQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVC-TIYGTYTSEVSYH--- 394 (508)
Q Consensus 319 ~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~-~~~~~~~~~~~~~--- 394 (508)
.....++.+....+.+...++. +..+.++..+.+..+.+.|++.+ .| +++-|.-. ..+.
T Consensus 224 -----~~~~G~~~~p~~a~ll~rgL~T-----L~lRm~~~~~nA~~lA~~L~~hp------~V~~V~yPgL~-s~p~h~l 286 (384)
T d1cs1a_ 224 -----ANNIGVTGGAFDSYLLLRGLRT-----LVPRMELAQRNAQAIVKYLQTQP------LVKKLYHPSLP-ENQGHEI 286 (384)
T ss_dssp -----HHHHTCBCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHTTCT------TEEEEECTTST-TSTTHHH
T ss_pred -----hhhhhhccccccHHHHhhccch-----hHHHHHHHHHHHHHHHHhcccCC------ceeeeeecccc-chhHHHH
Confidence 1112233444444444444443 56667777888888888888774 45 44444311 1111
Q ss_pred ------CCCceEEEEeeCCCCCccCHHHHHHHHhhCCC---eeccCCCCCchHHHhhcCCChh----hhhhhhhcCCccC
Q 010538 395 ------DTGSMVSFNLKRPDGSWFGYREVEKLASLSGI---QLRTGCFCNPGACAKYLGLSHS----DLLSNIEAGHVCW 461 (508)
Q Consensus 395 ------~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI---~v~~g~~~~~~~~~~~~~~~~s----~~~~~~~~~~~~~ 461 (508)
.-+++++|.+.+.. ....+.++.-.+ .++-|...+.- .+++. ..|+ .....+|.
T Consensus 287 ~~r~~~g~gg~~sf~l~~~~------~~a~~f~~~L~l~~~a~SlGg~eSLi-~~p~~-~th~~~~~e~r~~~Gi----- 353 (384)
T d1cs1a_ 287 AARQQKGFGAMLSFELDGDE------QTLRRFLGGLSLFTLAESLGGVESLI-SHAAT-MTHAGMAPEARAAAGI----- 353 (384)
T ss_dssp HHHHCSSCCSEEEEEESSCH------HHHHHHHHTCSSSEEBSCCCSSSCEE-EEGGG-TTTTTSCHHHHHHHTC-----
T ss_pred HHhhcCCCcceeEEeecchH------HHHHHHHHhCCcceeccccCCcccee-ccccc-cccccCCHHHHHhcCC-----
Confidence 12789999986531 123444444333 33434322110 00000 0111 11223443
Q ss_pred CCccccCCCCCceEEEecCCCCCHHHHHHHHHhhh
Q 010538 462 DDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 462 ~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~ 496 (508)
.++.||+|++.-+.+|=++.|-++|+
T Consensus 354 ---------~~~lvRlSvGlEd~eDLi~Dl~~AL~ 379 (384)
T d1cs1a_ 354 ---------SETLLRISTGIEDGEDLIADLENGFR 379 (384)
T ss_dssp ---------CTTEEEEECCSSCHHHHHHHHHHHHH
T ss_pred ---------CcCeEEEEeccCCHHHHHHHHHHHHH
Confidence 47899999998666665555555544
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.69 E-value=7e-15 Score=148.19 Aligned_cols=332 Identities=10% Similarity=0.022 Sum_probs=203.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCC--eEEEecccccchHHHHHHHHhcCCeEEEEccC
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQS--SYMYTMENHNSVLGIREYALSQGAAAFAIDVE 161 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~--~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~ 161 (508)
..+++.++++++++|.+. +++++|+|.|+.+++.++...+++ +|++++..+++....+. ..|++++.++++
T Consensus 31 ~~v~~fE~~~~~~~g~k~----ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t~~a~~~ai~---~~G~~pv~vDi~ 103 (371)
T d2fnua1 31 KRSLLFEEALCEFLGVKH----ALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANMLL---ESGYTPVFAGIK 103 (371)
T ss_dssp HHHHHHHHHHHHHHTCSE----EEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHHH---HTTCEEEECCBC
T ss_pred HHHHHHHHHHHHHHCcCe----EEEEecHHHHHHHHHHHhcccCCCCCeeecccccccccceeee---ccCccccccccc
Confidence 347788899999999973 578889999999999999766554 79999988887665444 359999999998
Q ss_pred CccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCC
Q 010538 162 EAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK 241 (508)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~ 241 (508)
.+..+ +.+.++ ..++++|++|+++|. .|...++++|.++|++
T Consensus 104 ~~~~~---------------~~~~~~--------~~~~~~t~avi~vh~---~G~~~~~~~i~~~~~~------------ 145 (371)
T d2fnua1 104 NDGNI---------------DELALE--------KLINERTKAIVSVDY---AGKSVEVESVQKLCKK------------ 145 (371)
T ss_dssp TTSSB---------------CGGGSG--------GGCCTTEEEEEEECG---GGCCCCHHHHHHHHHH------------
T ss_pred ccccc---------------cchhhh--------hhccchhhccccccc---cccccccccccccccc------------
Confidence 76544 234555 334789999998874 6999999999999998
Q ss_pred CCeEEEEeccccCCCCCCCCC-CCCCcEEEEec--cccccCCCcceEEEEec-hhHhhhccccccCceEEecccchhhhh
Q 010538 242 GRWMVLIDAAKGCVTQPPDLS-KYPVDFVVMSF--YKIFGYPTGLGALIMRN-DAAKLLKNTYFSGGTVAASIADIDFVK 317 (508)
Q Consensus 242 ~g~~vivD~a~~~g~~~~d~~-~~~~D~~~~S~--~K~~g~P~G~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~ 317 (508)
+|+++|.|++|+.|...-.-. ...-|+.++|+ .|.+... +-|+++.++ +..++++.....|.. ......
T Consensus 146 ~~i~lIEDaaqa~Ga~~~~~~~G~~g~~~~~Sf~~~K~l~~g-~GG~i~t~~~~~~~~~~~~~~~g~~-~~~~~~----- 218 (371)
T d2fnua1 146 HSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPITTA-EGGAVVTNDSELHEKMKLFRSHGML-KKDFFE----- 218 (371)
T ss_dssp HTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCS-SCEEEEESCHHHHHHHHHHTBTTEE-ESSSSC-----
T ss_pred cchhhccchhhccCceeccccCCccccccccccccccccccc-cceEEEeechhhhhhcccccccccc-cccccc-----
Confidence 999999999999987532211 11134555555 6866633 337777765 444444433222211 000000
Q ss_pred hccCccccccCCC-CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCC
Q 010538 318 RRQGVEELFEDGT-ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDT 396 (508)
Q Consensus 318 ~~~~~~~~~~~gt-~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 396 (508)
......|. .-+..+.|. .++..+ ..++.+.++-+++.+++.+.|..+ +++.+..+.... ...
T Consensus 219 -----~~~~~~G~n~r~sel~Aa-igl~qL--~~l~~~~~~R~~~~~~y~~~l~~~------~~~~~~~~~~~~---~~~ 281 (371)
T d2fnua1 219 -----GEVKSIGHNFRLNEIQSA-LGLSQL--KKAPFLMQKREEAALTYDRIFKDN------PYFTPLHPLLKD---KSS 281 (371)
T ss_dssp -----EEESSCCCBCCCCHHHHH-HHHHHH--TTHHHHHHHHHHHHHHHHHHHTTC------SSEEESGGGCSS---CCC
T ss_pred -----cccccccccccccchhhh-hhhhhh--hhccchhhhhhhhhhhhccccccc------cccccccccccc---ccc
Confidence 00001111 111222211 122222 236777777788899999999887 367776543321 111
Q ss_pred CceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEE
Q 010538 397 GSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIR 476 (508)
Q Consensus 397 ~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iR 476 (508)
.....+.+.+... ....++.+.|.++||.++.... +-..+++ ...+.....|-.. .......+.
T Consensus 282 ~~~~~i~~~~~~~--~~r~~~~~~L~~~gI~~~~~y~--pl~~~~~--------~~~~~~~~~~pna----e~~~~~~l~ 345 (371)
T d2fnua1 282 NHLYPILMHQKFF--TCKKLILESLHKRGILAQVHYK--PIYQYQL--------YQQLFNTAPLKSA----EDFYHAEIS 345 (371)
T ss_dssp CSCEEEEECGGGG--GGHHHHHHHHHHTTEECBCCCC--CGGGSHH--------HHHHHCCCCCHHH----HHHHHHEEE
T ss_pred cccccccccccch--hHHHHHHHHHHHCCCCcceeCc--ccccCHH--------HHhccccCCCHHH----HHHHhCeEE
Confidence 2334444443211 1234588999999999876532 1111111 0110000000000 001246799
Q ss_pred EecCCCCCHHHHHHHHHhhhhhhh
Q 010538 477 VSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 477 is~~~~~t~eev~~l~~~~~~~~~ 500 (508)
+-+|..-|.+|+++.++.+.++++
T Consensus 346 LP~~~~lt~~di~~I~~~i~~~~~ 369 (371)
T d2fnua1 346 LPCHANLNLESVQNIAHSVLKTFE 369 (371)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHH
Confidence 989999999999999999988765
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.69 E-value=4.7e-15 Score=149.50 Aligned_cols=329 Identities=14% Similarity=0.014 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA 163 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~ 163 (508)
...+..++.+++++|.+ .+++++|+|.|+.+++.++.+++|++|+++...+++....+.. .|++++.++++.+
T Consensus 21 ~~~~~fE~~~~~~~~~~----~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a~~~~~~~---~g~~pv~~Di~~~ 93 (374)
T d1o69a_ 21 EFVNRFEQSVKDYSKSE----NALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICY---LKAKPVFIDCDET 93 (374)
T ss_dssp HHHHHHHHHHHHHHCCS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHHH---TTCEEEEECBCTT
T ss_pred HHHHHHHHHHHHHHCcC----eEEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchHhhHHHHhh---ccceeEecccccc
Confidence 45788899999999997 3588999999999999999889999999999999887655544 4999999998854
Q ss_pred cCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCC
Q 010538 164 VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGR 243 (508)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g 243 (508)
...... +...++ ...+++|++|+++|. .|...++++|.++|++ +|
T Consensus 94 ~~~~~~------------~~~~~~--------~~~~~~~~aii~~~~---~G~~~d~~~i~~~~~~------------~~ 138 (374)
T d1o69a_ 94 YNIDVD------------LLKLAI--------KECEKKPKALILTHL---YGNAAKMDEIVEICKE------------ND 138 (374)
T ss_dssp SSBCHH------------HHHHHH--------HHCSSCCCEEEEECG---GGCCCCHHHHHHHHHH------------TT
T ss_pred cccccc------------cccccc--------hhccccccccccccc---ccchhhhHHHHHHhhc------------cC
Confidence 332111 222333 223577899988775 6999999999999998 99
Q ss_pred eEEEEeccccCCCCCCCCCCC--CCcEEEEecc--ccccCCCcceEEEEech-hHhhhccccccCceEEecccchhhhhh
Q 010538 244 WMVLIDAAKGCVTQPPDLSKY--PVDFVVMSFY--KIFGYPTGLGALIMRND-AAKLLKNTYFSGGTVAASIADIDFVKR 318 (508)
Q Consensus 244 ~~vivD~a~~~g~~~~d~~~~--~~D~~~~S~~--K~~g~P~G~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~~ 318 (508)
++||.|++|++|..--. ... --|+-++|+| |.++.. |-|+++.+++ ..++++.....+... .+.
T Consensus 139 i~vIED~a~a~g~~~~~-~~~G~~gd~~~fSf~~~K~l~tg-eGG~i~tnn~~~~~~~~~~~~~g~~~-------~~~-- 207 (374)
T d1o69a_ 139 IVLIEDAAEALGSFYKN-KALGTFGEFGVYSYNGNKIITTS-GGGMLIGKNKEKIEKARFYSTQAREN-------CLH-- 207 (374)
T ss_dssp CEEEEECTTCTTCEETT-EETTSSSSEEEEECCTTSSSCCS-SCEEEEESCHHHHHHHHHHTBTCCCS-------SSS--
T ss_pred cchhhhhhhhhcceECC-eecCCCCceEEEeccCccccccc-cceeehhhhHHHHHhhcccccccccc-------ccc--
Confidence 99999999999865322 111 1388888887 766633 3477777654 443443322111100 000
Q ss_pred ccCccccccCCC-CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCC
Q 010538 319 RQGVEELFEDGT-ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTG 397 (508)
Q Consensus 319 ~~~~~~~~~~gt-~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (508)
......|. .-...+. +|+...+-..++.+.++-+++++++.+.|.... .+ +..+... ...
T Consensus 208 ----~~~~~~G~N~rm~ei~---Aaig~~qL~~l~~~i~~r~~i~~~y~~~L~~~~------~~-~~~~~~~-----~s~ 268 (374)
T d1o69a_ 208 ----YEHLDYGYNYRLSNVL---GAIGVAQMEVLEQRVLKKREIYEWYKEFLGEYF------SF-LDELENS-----RSN 268 (374)
T ss_dssp ----CCCSSCCCBCBCCHHH---HHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTE------EC-CCCCTTE-----ECC
T ss_pred ----cccccCCccccccchh---hhhhHHHHhhhhhhcchhHHHHHHHHhhccccc------cc-cccccCC-----CCC
Confidence 00011121 1111111 122211112356677777888899999997652 11 1111111 001
Q ss_pred ceEEEEeeCCCC------------------CccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcC-CChhhhhhhhhcCC
Q 010538 398 SMVSFNLKRPDG------------------SWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLG-LSHSDLLSNIEAGH 458 (508)
Q Consensus 398 ~~v~~~~~~~~~------------------~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~-~~~s~~~~~~~~~~ 458 (508)
..+.+.+...+. ..-....+.+.|+++||.+++... +...++++. ........+-
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~gI~~r~~y~--pl~~~~~~~~~~~~~~pna~---- 342 (374)
T d1o69a_ 269 RWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWK--AMHTQEVFKGAKAYLNGNSE---- 342 (374)
T ss_dssp CSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCC--CGGGCGGGTTCEEEECSHHH----
T ss_pred hhheeeeeccccccccccccccccchhhccchhhHHHHHHHHHHCCCCEEEeCc--chhhChhhhcCCCCCCHHHH----
Confidence 111111111000 001234688999999999887532 111111111 0000000000
Q ss_pred ccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 459 VCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 459 ~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
......+.+-+|...|.+|+++.++.|.++++
T Consensus 343 ----------~~~~~~i~LP~~~~lt~~di~~I~~~I~~~lk 374 (374)
T d1o69a_ 343 ----------LFFQKGICLPSGTAMSKDDVYEISKLILKSIK 374 (374)
T ss_dssp ----------HHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred ----------HHHhCEEECcCCCCCCHHHHHHHHHHHHHHHC
Confidence 01246788989999999999999999988764
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.68 E-value=3.2e-15 Score=151.52 Aligned_cols=334 Identities=11% Similarity=0.046 Sum_probs=202.7
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC-c
Q 010538 85 IVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE-A 163 (508)
Q Consensus 85 ~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~-~ 163 (508)
.+++.++++|+++|.+. +++++++|.|+.+++.++.+++|++|++++..+++....+. ..|.+++.++.+. .
T Consensus 35 ~v~~fE~~~a~~~g~~~----~v~~~SGt~Al~lal~~l~~~~gdeVi~p~~t~~a~~~ai~---~~g~~p~~~d~~~~~ 107 (384)
T d1b9ha_ 35 EVNSFEREFAAHHGAAH----ALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSSQAAQ---RLGAVTVPVDVDAAT 107 (384)
T ss_dssp HHHHHHHHHHHHTTCSE----EEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHH---HTTCEEEEECBCTTT
T ss_pred HHHHHHHHHHHHHCcCe----EEEeCCHHHHHHHHHHHcCCCCCCEEEEecccccccccccc---ccccccccccccccc
Confidence 47778899999999984 57889999999999999988999999999988887765544 4599999999875 3
Q ss_pred cCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCC
Q 010538 164 VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGR 243 (508)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g 243 (508)
..+ |++.++ ..++++|+.|+++| ..|...++++|.++|++ ++
T Consensus 108 ~~~---------------d~~~~~--------~~i~~~tk~i~~~~---~~g~~~d~~~i~~~~~~------------~~ 149 (384)
T d1b9ha_ 108 YNL---------------DPEAVA--------AAVTPRTKVIMPVH---MAGLMADMDALAKISAD------------TG 149 (384)
T ss_dssp CCB---------------CHHHHH--------HHCCTTEEEECCBC---GGGCCCCHHHHHHHHHH------------HT
T ss_pred ccc---------------chhhhc--------cccccccccccccc---ccccccccccchhhhhh------------hh
Confidence 444 688888 33478899987654 57889999999999998 99
Q ss_pred eEEEEeccccCCCCCCCCCC---C-CCcEEEEeccccccCCCcceEEEEech-hHhhhccccc-cCceEEecccchhhhh
Q 010538 244 WMVLIDAAKGCVTQPPDLSK---Y-PVDFVVMSFYKIFGYPTGLGALIMRND-AAKLLKNTYF-SGGTVAASIADIDFVK 317 (508)
Q Consensus 244 ~~vivD~a~~~g~~~~d~~~---~-~~D~~~~S~~K~~g~P~G~G~l~~~~~-~~~~l~~~~~-g~~~~~~~~~~~~~~~ 317 (508)
++++.|++|+.|... +-.. . ++.++.++.+|.++...| |+++.+++ +.+.++.... |+.. . .....|.
T Consensus 150 i~lieD~a~a~ga~~-~g~~~g~~g~~~~~Sf~~~K~i~~g~G-G~i~t~~~~~~~~~~~~~~~g~~~-~--~~~~~~~- 223 (384)
T d1b9ha_ 150 VPLLQDAAHAHGARW-QGKRVGELDSIATFSFQNGKLMTAGEG-GAVVFPDGETEKYETAFLRHSCGR-P--RDDRRYF- 223 (384)
T ss_dssp CCBCEECTTCTTCEE-TTEEGGGSSSCEEEECCTTSSSCSSSC-EEEEECTTCHHHHHHHHHHTBTTC-C--TTCSSCC-
T ss_pred hhhhhhhceeccccc-CCEecCcccccceeccccccccccccc-chhhhhhHHHHHHHHHHHhcCCCC-c--ccccccc-
Confidence 999999999998753 2111 1 233444555787763444 77777644 4444433322 1111 0 0000000
Q ss_pred hccCccccccCCC-CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCC
Q 010538 318 RRQGVEELFEDGT-ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDT 396 (508)
Q Consensus 318 ~~~~~~~~~~~gt-~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 396 (508)
. ...|. .-...+- +++-+.+-..++++.++-+++.+++.+.|++++ ++......... ...
T Consensus 224 ------~-~~~G~n~rms~l~---Aaig~~qL~~ld~~~~~R~~~~~~y~~~L~~~~------~i~~~~~~~~~---~~~ 284 (384)
T d1b9ha_ 224 ------H-KIAGSNMRLNEFS---ASVLRAQLARLDEQIAVRDERWTLLSRLLGAID------GVVPQGGDVRA---DRN 284 (384)
T ss_dssp ------C-CSCCCBCBCBHHH---HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTST------TCEECCCCTTC---CBC
T ss_pred ------c-cccccccccccch---hhhhhhhhhhcccchhhhhhhhhhhhhhhhccc------ccccccccccc---ccc
Confidence 0 00111 1111121 122211112367777788889999999999874 56544322210 111
Q ss_pred -CceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhh---cCCC-hhhhhhhhhcCCccCCCccccCCCC
Q 010538 397 -GSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKY---LGLS-HSDLLSNIEAGHVCWDDNDIIHGKP 471 (508)
Q Consensus 397 -~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~---~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~ 471 (508)
.....|.++..... ....+.+.|.++||.++... .+-..+++ +|.. ......... |-. -....
T Consensus 285 ~~~~~~~~~~~~~~~--~Rd~l~~~L~~~GI~~~~~y--~plh~~~~~~~~~~~~~~~~~~~~~----~Pn----a~~l~ 352 (384)
T d1b9ha_ 285 SHYMAMFRIPGLTEE--RRNALVDRLVEAGLPAFAAF--RAIYRTDAFWELGAPDESVDAIARR----CPN----TDAIS 352 (384)
T ss_dssp CCSEEEEECTTCCHH--HHHHHHHHHHHTTCCEEECC--CCGGGSHHHHHSSCCSSCHHHHHHT----CHH----HHHHH
T ss_pred ccccccceecccccc--cHHHHHHHHHHCCCCeeeeC--cchhcCHHHHhcCCCcccccccccC----CHH----HHHHH
Confidence 23444555432111 12358999999999987643 22111111 1111 000000000 000 00012
Q ss_pred CceEEEecCCCCC-HHHHHHHHHhhhhhhh
Q 010538 472 TGAIRVSFGYMST-FEDAKVNRCSSFDFVN 500 (508)
Q Consensus 472 ~~~iRis~~~~~t-~eev~~l~~~~~~~~~ 500 (508)
...+++-++..-| ++|+++.++.|++.++
T Consensus 353 ~~~l~LP~~~~Lt~e~ei~~I~~~i~~~l~ 382 (384)
T d1b9ha_ 353 SDCVWLHHRVLLAGEPELHATAEIIADAVA 382 (384)
T ss_dssp HHEEEEEGGGGGSCHHHHHHHHHHHHHHHH
T ss_pred hCEEEccCCCCCCCHHHHHHHHHHHHHHHh
Confidence 4679999987766 6899999999998775
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=99.68 E-value=5.6e-17 Score=164.97 Aligned_cols=354 Identities=14% Similarity=0.039 Sum_probs=197.0
Q ss_pred chHHHHHHhhccCC-CCCeeeeCC------CCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc
Q 010538 25 SIDQIRATEFKRLE-NGTVYLDHA------GATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF 97 (508)
Q Consensus 25 ~~~~~r~~~f~~~~-~~~iyld~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~ 97 (508)
.+..+-+ +|+... ++.|.|.-+ +..+++|.|.+++ +....+. ..+ .|....+..++.+++.+.+.+.-
T Consensus 12 ~i~~l~~-~~~~d~~~~~InL~iG~~~d~~g~~~~~~~V~~A~-~~~~~~~--~~~-~Y~p~~G~~~lr~aia~~~~~~~ 86 (394)
T d2ay1a_ 12 KILALMG-EFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAE-QRMLETE--TTK-TYAGLSGEPEFQKAMGELILGDG 86 (394)
T ss_dssp SHHHHHH-HHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHH-HHHHHHC--CCC-CCCCSSCCHHHHHHHHHHHHGGG
T ss_pred hHHHHHH-HHhCCCCCCCEEccCCCccCCCCCCCCCHHHHHHH-HHHhhCC--CCC-CCCCCCCCHHHHHHHHHHHhccc
Confidence 4555555 665431 345655544 4556667777665 3343321 111 23322223334444444333333
Q ss_pred CCC-CCCceEEEcCChHHH--HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccc
Q 010538 98 NAS-MKDYKCIFTSGATAA--LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLV 174 (508)
Q Consensus 98 ~~~-~~~~~i~~t~g~t~a--l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~ 174 (508)
+.. .. ..++|.+++.+ +.+.+..+ ..+|+.|+++...++++....+.+ |.+++.+|...+.....
T Consensus 87 ~~~~~~--~~~~~~~~~~~~~l~~~~~~~-~~~gd~V~~p~p~~~~y~~~~~~~---g~~~v~~~~~~~~~~~~------ 154 (394)
T d2ay1a_ 87 LKSETT--ATLATVGGTGALRQALELARM-ANPDLRVFVSDPTWPNHVSIMNFM---GLPVQTYRYFDAETRGV------ 154 (394)
T ss_dssp CCGGGE--EEEEEEHHHHHHHHHHHHHHH-HCTTCCEEEEESCCHHHHHHHHHH---TCCEEEEECEETTTTEE------
T ss_pred cccccc--cceeccCchHHHHHHHHHhhh-cCCceEEEEecccccchHHHHHHc---CCEEEEecccchhcccc------
Confidence 332 22 34444444444 44444444 578899999997777776665554 89999998754322100
Q ss_pred cccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC
Q 010538 175 TSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC 254 (508)
Q Consensus 175 ~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~ 254 (508)
+.+.+. +.+ ....++++++++++++||||.+++.+++.++++ +|++++++|+.|.++..
T Consensus 155 -------~~~~~~--~~~---~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~---------la~~~~~~ii~De~Y~~ 213 (394)
T d2ay1a_ 155 -------DFEGMK--ADL---AAAKKGDMVLLHGCCHNPTGANLTLDQWAEIAS---------ILEKTGALPLIDLAYQG 213 (394)
T ss_dssp -------CHHHHH--HHH---HTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHH---------HHHHHTCEEEEEECCTT
T ss_pred -------cchhHH--HHH---hhcccCcEEEEeCCCCCCCCCCCCHHHHHHHHH---------HhhcceEEEEEeccchh
Confidence 122222 111 123567899999999999999999888888777 67779999999999864
Q ss_pred CCCCCC---------CCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCcc
Q 010538 255 VTQPPD---------LSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 255 g~~~~d---------~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
-.-.-. ......-+++.|++|.++ ..| +|++.+.....+........- . ...
T Consensus 214 l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~-~~G~R~G~~~~~~~~~~~~~~~~~~~----------~------~~~ 276 (394)
T d2ay1a_ 214 FGDGLEEDAAGTRLIASRIPEVLIAASCSKNFG-IYRERTGCLLALCADAATRELAQGAM----------A------FLN 276 (394)
T ss_dssp SSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTT-CGGGCEEEEEEECSSHHHHHHHHHHH----------H------HHH
T ss_pred hcccccccchhhhhhhhhccccccccccccccc-CCcccccchhhchhHHHHHHHhhhhh----------H------hhh
Confidence 221100 001112366778899887 446 899999877655433211000 0 001
Q ss_pred ccccCCCCChhHHHHHHHHH------HHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCC
Q 010538 324 ELFEDGTASFLSIASIRHGF------NLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTG 397 (508)
Q Consensus 324 ~~~~~gt~~~~~~~~l~~al------~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (508)
......++...+.. +...+ +.+.+ .++.+++++.++++.+.+.|+++.. ...+..+.+++ +
T Consensus 277 ~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~~---~~~~~~~~~~~--------G 343 (394)
T d2ay1a_ 277 RQTYSFPPFHGAKI-VSTVLTTPELRADWMA-ELEAVRSGMLRLREQLAGELRDLSG---SDRFGFVAEHR--------G 343 (394)
T ss_dssp HTTTSSCCCHHHHH-HHHHHHSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHT---SSTTTHHHHCC--------S
T ss_pred cccccchhHHHHHH-HHHhcCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCC---CCceeeECCCc--------e
Confidence 11112222222211 11111 11112 3567788889999999999987631 00122233332 5
Q ss_pred ceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEE
Q 010538 398 SMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRV 477 (508)
Q Consensus 398 ~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRi 477 (508)
.++++.+ +...+.++++++||.+.+| .||
T Consensus 344 ~F~~~~l--------s~~~~~~L~~~~~V~~~~g-------------------------------------------~Ri 372 (394)
T d2ay1a_ 344 MFSRLGA--------TPEQVKRIKEEFGIYMVGD-------------------------------------------SRI 372 (394)
T ss_dssp SEEECCC--------CHHHHHHHHHHHCEECCTT-------------------------------------------CEE
T ss_pred eEEecCc--------CHHHHHHHHHhCCEEecCC-------------------------------------------CEE
Confidence 5665433 2234666668889987653 489
Q ss_pred ecCCCCCHHHHHHHHHhhhhh
Q 010538 478 SFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 478 s~~~~~t~eev~~l~~~~~~~ 498 (508)
|+.. .+.++|+++.++|.+.
T Consensus 373 ~~a~-l~~~~i~~l~~ai~~v 392 (394)
T d2ay1a_ 373 NIAG-LNDNTIPILARAIIEV 392 (394)
T ss_dssp EGGG-CCTTTHHHHHHHHHHH
T ss_pred EecC-CCHHHHHHHHHHHHHh
Confidence 9864 3568899999888763
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=1.9e-14 Score=144.92 Aligned_cols=318 Identities=10% Similarity=0.018 Sum_probs=199.7
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEEccC
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDVE 161 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~~ 161 (508)
..-.+.+.+.+|++-|+. ..+.++++..|+..++.++ .++|++||++..-|.......+ .+.+.|+++..++..
T Consensus 57 nPt~~~le~~la~LEg~~----~a~~~~SGMaAi~~~l~~l-~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~~ 131 (391)
T d1cl1a_ 57 TLTHFSLQQAMCELEGGA----GCVLFPCGAAAVANSILAF-IEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL 131 (391)
T ss_dssp CHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTT
T ss_pred ChhHHHHHHHHHHHhCCc----cEEEeccccceeeehhhcc-cCCCCeEEEecccccchhhhhhhcccccccccccccCc
Confidence 344677889999999985 3466778888999888888 6889999999988887776655 467789999988764
Q ss_pred CccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCC
Q 010538 162 EAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK 241 (508)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~ 241 (508)
. .++++ ++ +.++|++|++..+.||+..+.|++++++++++ .+
T Consensus 132 d--------------------~~~~~--~~------i~~~t~~i~~EtpsNP~l~v~Di~~i~~~a~~----------~~ 173 (391)
T d1cl1a_ 132 I--------------------GADIV--KH------LQPNTKIVFLESPGSITMEVHDVPAIVAAVRS----------VV 173 (391)
T ss_dssp C--------------------GGGGG--GT------CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHH----------HC
T ss_pred c--------------------ccccc--cc------cccccceeeecccCcccccccccHHHHHHHHh----------cc
Confidence 2 34456 33 36789999999999999999999999999864 12
Q ss_pred CCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhc
Q 010538 242 GRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRR 319 (508)
Q Consensus 242 ~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~ 319 (508)
+|++++||.+-+-+.. .+.-+.|+|+++.|..|+++|-.. .|.++.+++..+.+...
T Consensus 174 ~g~~~vVDnT~atP~~-~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~-------------------- 232 (391)
T d1cl1a_ 174 PDAIIMIDNTWAAGVL-FKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLREN-------------------- 232 (391)
T ss_dssp TTCEEEEECTTTTTTS-SCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHH--------------------
T ss_pred CCcEEEEeccccchhh-hcccccccceEEeecchhccccccccccceeccccccccchhh--------------------
Confidence 6999999999865432 222235799999999999885432 46666666665443322
Q ss_pred cCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEE-EecCCCCCccc-----
Q 010538 320 QGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCT-IYGTYTSEVSY----- 393 (508)
Q Consensus 320 ~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~-~~~~~~~~~~~----- 393 (508)
.+...++++....+.+...++. +..+.++..+.+..+.+.|++.+ .+. ++-|.-. ..+
T Consensus 233 ----~~~~G~~~~p~~a~ll~rgl~T-----L~lR~~~~~~nA~~vA~~L~~hp------~V~~V~yPgl~-s~p~~~~~ 296 (391)
T d1cl1a_ 233 ----AYLMGQMVDADTAYITSRGLRT-----LGVRLRQHHESSLKVAEWLAEHP------QVARVNHPALP-GSKGHEFW 296 (391)
T ss_dssp ----HHHTTCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHTCT------TEEEEECTTST-TSTTHHHH
T ss_pred ----hhcccccCCchhhhhhhccchh-----HHHHHHHHHHHHHHHHHHHHhcc------ccccccccccc-chhhHHHH
Confidence 1122334444444433334332 56667778888888888888874 454 4433211 000
Q ss_pred ----CCCCceEEEEeeCCCCCccCHHHHHHHHhhCCC---eeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccc
Q 010538 394 ----HDTGSMVSFNLKRPDGSWFGYREVEKLASLSGI---QLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDI 466 (508)
Q Consensus 394 ----~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI---~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 466 (508)
...+++++|.+.... +...+.+.++.-.+ .++-|...+.- ++ +.+.-...+ ++..
T Consensus 297 ~~~~~g~gg~~sf~l~~~~----~~e~~~~f~d~L~l~~~a~SlG~~~SLi-~~-----~~~~~~~~~--------~~~~ 358 (391)
T d1cl1a_ 297 KRDFTGSSGLFSFVLKKKL----NNEELANYLDNFSLFSMAYSWGGYESLI-LA-----NQPEHIAAI--------RPQG 358 (391)
T ss_dssp HHHCSCCCSEEEEEESSCC----CHHHHHHHHTTCSSCBCCSCCCSSSCEE-EE-----ECHHHHHHT--------STTC
T ss_pred hhccCCCCcceeeeecCCC----CHHHHHHHHHcCCcceEeeCCCCCccce-eC-----CcccccccC--------CchH
Confidence 112578899987532 22235555544343 33333221100 00 000000001 0011
Q ss_pred cCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 467 IHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 467 ~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
-.+..++.||+|++.-+-+|=++.|-++|.++
T Consensus 359 ~~gi~~~liRlSVGlEd~eDLi~Dl~~AL~~i 390 (391)
T d1cl1a_ 359 EIDFSGTLIRLHIGLEDVDDLIADLDAGFARI 390 (391)
T ss_dssp CCCCCSCEEEEECCSSCHHHHHHHHHHHHHHT
T ss_pred hcCCCcCEEEEEeccCCHHHHHHHHHHHHHhh
Confidence 11335788999999866555566666666554
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.66 E-value=5.7e-15 Score=149.70 Aligned_cols=267 Identities=11% Similarity=0.016 Sum_probs=168.9
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEEccC
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDVE 161 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~~ 161 (508)
..-.+.+.+.++.+-|++.. +.++++-.|+..++.++ .++|++||++..-|.......+ .+.+.|+++..++.+
T Consensus 57 nPT~~~LE~~la~LE~~~~a----~~~~SGmaAi~~~~~~l-~~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~ 131 (421)
T d2ctza1 57 NPTVDVLEKRLAALEGGKAA----LATASGHAAQFLALTTL-AQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSRE 131 (421)
T ss_dssp CHHHHHHHHHHHHHHTCSEE----EEESSHHHHHHHHHHHH-CCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTT
T ss_pred CHHHHHHHHHHHHHhCCCeE----EEecChHHHHHHHHHhh-cccccceeecCCcCCchhHHHHHHHhhccccceecccc
Confidence 34567788999999998643 55666667888888888 6899999999988877776655 567899999988654
Q ss_pred CccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCC
Q 010538 162 EAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK 241 (508)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~ 241 (508)
.. .+..+ ..++++|++|++..+.||+..+.|++.|+++||+
T Consensus 132 ~~-------------------~~~~~--------~~~~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~------------ 172 (421)
T d2ctza1 132 ER-------------------PEEFL--------ALTDEKTRAWWVESIGNPALNIPDLEALAQAARE------------ 172 (421)
T ss_dssp CC-------------------HHHHH--------HHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHH------------
T ss_pred cC-------------------cchhc--------cccCCCceEEEEcCCCcceeEecchHHHHHHHHh------------
Confidence 21 22233 1236899999999999999999999999999998
Q ss_pred CCeEEEEeccccC-CCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhh-hc--------cccccCceEEec
Q 010538 242 GRWMVLIDAAKGC-VTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKL-LK--------NTYFSGGTVAAS 309 (508)
Q Consensus 242 ~g~~vivD~a~~~-g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~-l~--------~~~~g~~~~~~~ 309 (508)
+|++++||.+-+. +.. ....+.|+|+++-|..|.++|=.. .|+++.+++.... .+ +.+.+.... ..
T Consensus 173 ~g~~~vvDnT~a~tP~~-~~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~-~~ 250 (421)
T d2ctza1 173 KGVALIVDNTFGMGGYL-LRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLT-EA 250 (421)
T ss_dssp HTCEEEEECGGGGGGTS-CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHH-HH
T ss_pred cCCceEeccccccccee-ccccccCCcEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHH-HH
Confidence 8999999999763 322 222345799999999999884322 5777766543211 11 000000000 00
Q ss_pred ccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceE-EEecCCC
Q 010538 310 IADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVC-TIYGTYT 388 (508)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~-~~~~~~~ 388 (508)
.....|.........+...+.++....+-+...++. +..+.++..+.+..+.+.|++.+ .| +++-|.-
T Consensus 251 ~~~~~~~~~~~~~~~~~~G~~~sP~~a~l~~rgl~T-----L~lRm~~~~~nA~~vA~~L~~hp------~V~~V~yPgL 319 (421)
T d2ctza1 251 FGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMET-----LSLRAERHVENTLHLAHWLLEQP------QVAWVNYPGL 319 (421)
T ss_dssp HGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHTCT------TEEEEECTTS
T ss_pred hccHHHHHHHHHHHHHhccCCCCHHHHHHHhcCCcc-----hhhHHHHHHHHHHHHHhhhccCC------CeeEEecCCc
Confidence 000000000000011112444555544444444443 56677788888888989898874 55 5554431
Q ss_pred CC---------cccCCCCceEEEEeeC
Q 010538 389 SE---------VSYHDTGSMVSFNLKR 406 (508)
Q Consensus 389 ~~---------~~~~~~~~~v~~~~~~ 406 (508)
.. .-...-+++++|.+++
T Consensus 320 ~s~p~~~~a~~~~~g~~G~~~sf~l~~ 346 (421)
T d2ctza1 320 PHHPHHDRAQKYFKGKPGAVLTFGLKG 346 (421)
T ss_dssp TTCTTHHHHHHHHTTCCCSEEEEEETT
T ss_pred CCCccHHHHHHhcCCCCceEEEEEecC
Confidence 10 0001126799999964
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.63 E-value=8.7e-15 Score=147.46 Aligned_cols=325 Identities=13% Similarity=0.009 Sum_probs=190.5
Q ss_pred hhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEE
Q 010538 78 ISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAF 156 (508)
Q Consensus 78 ~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~ 156 (508)
+++....-.+.+++.++++-|.+.. ++ ++++..|+.+++. + ..+|+.|+++..-|........ .+.++|+++.
T Consensus 49 YsR~gnPT~~~lE~~la~LE~~~~a---~~-~sSGmaAi~~~l~-~-l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~ 122 (393)
T d1n8pa_ 49 YSRSQNPNRENLERAVAALENAQYG---LA-FSSGSATTATILQ-S-LPQGSHAVSIGDVYGGTHRYFTKVANAHGVETS 122 (393)
T ss_dssp BTTTCCHHHHHHHHHHHHHTTCSEE---EE-ESCHHHHHHHHHH-T-SCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCE
T ss_pred eeCCCChHHHHHHHHHHHHhCCceE---EE-ecCchhHHHhhhh-c-ccCCCeeeeeeeecccchhhhhhhhhcccceeE
Confidence 3333345577788999999988643 44 4555667766654 4 4667888888777765555433 4566788888
Q ss_pred EEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCcccccc
Q 010538 157 AIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEI 236 (508)
Q Consensus 157 ~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~ 236 (508)
.++.+ .++++ ++ ++++|++|++..+.||+..+.|++.|++++|+
T Consensus 123 ~~~~~---------------------~~~~~--~~------i~~~t~lv~~EspsNP~l~v~Di~~ia~~a~~------- 166 (393)
T d1n8pa_ 123 FTNDL---------------------LNDLP--QL------IKENTKLVWIETPTNPTLKVTDIQKVADLIKK------- 166 (393)
T ss_dssp EESSH---------------------HHHHH--HH------SCSSEEEEEECSSCTTTCCCCCHHHHHHHHHH-------
T ss_pred Eeecc---------------------hHHHH--HH------hhhhcceeEecCcchhhhhccchhhhhhhhhh-------
Confidence 77531 23455 33 36899999999999999999999999999995
Q ss_pred CCCCCCCeEEEEeccccC--CCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEechh-HhhhccccccCceEEeccc
Q 010538 237 SPFSKGRWMVLIDAAKGC--VTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDA-AKLLKNTYFSGGTVAASIA 311 (508)
Q Consensus 237 ~~~~~~g~~vivD~a~~~--g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~ 311 (508)
.+.++|++++||.+-+. ...|++ .|+|+++.|+.|+++|-.. .|+++.+++. .++++..
T Consensus 167 -~~~~~g~~lvVDnT~atP~~~~Pl~---~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~------------ 230 (393)
T d1n8pa_ 167 -HAAGQDVILVVDNTFLSPYISNPLN---FGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFL------------ 230 (393)
T ss_dssp -HTTTTTCEEEEECTTTHHHHCCGGG---GTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHH------------
T ss_pred -hcccCCceEEEecCccCcccCCchh---hCCCEEEEccccccCCCCccccceeeecchhHHHHHHHH------------
Confidence 44558999999998754 334443 4799999999999985433 4666666543 3333321
Q ss_pred chhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceE-EEecCCCCC
Q 010538 312 DIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVC-TIYGTYTSE 390 (508)
Q Consensus 312 ~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~-~~~~~~~~~ 390 (508)
+....++++....+.+...++. +..+.++..+.+..+.+.|++.. +.+ +++-|.-..
T Consensus 231 ------------~~~~G~~~~p~~a~ll~rgl~T-----l~lR~~~~~~nA~~lA~~L~~~~-----~~V~~V~yP~l~~ 288 (393)
T d1n8pa_ 231 ------------QNAIGAIPSPFDAWLTHRGLKT-----LHLRVRQAALSANKIAEFLAADK-----ENVVAVNYPGLKT 288 (393)
T ss_dssp ------------HHHHCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHTSCT-----TTEEEEECTTSTT
T ss_pred ------------HhhcCCCCChHHHHHHHhCCcc-----hhhHHHHHHHHHHHHHHHHHhcc-----CcEEEEecccccc
Confidence 1222334454444444444443 45666777777777888886531 223 343332110
Q ss_pred c----------ccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCcc
Q 010538 391 V----------SYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVC 460 (508)
Q Consensus 391 ~----------~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 460 (508)
- .....+++++|.+++... . ..++...|+-..+.++-|...+.- .+++ ...+ +..
T Consensus 289 ~~~~~~a~~~~~~~~~G~~~sf~l~~~~~-~--~~~f~~~l~l~~~~~SlGg~~SLi-~~p~-------~~~h----~~~ 353 (393)
T d1n8pa_ 289 HPNYDVVLKQHRDALGGGMISFRIKGGAE-A--ASKFASSTRLFTLAESLGGIESLL-EVPA-------VMTH----GGI 353 (393)
T ss_dssp STTHHHHHHHSGGGCCCSEEEEEESSCHH-H--HHHHHHHCSSSEECSCCCCSSCEE-ECTT-------TTTS----CSS
T ss_pred cccchhhhhccccCCCCceEEEEEeCCHH-H--HHHHHHhCCcceecccCCCcCceE-eCch-------hhcc----ccC
Confidence 0 000126799999974211 0 112333333223333333221110 0000 0000 001
Q ss_pred CCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhh
Q 010538 461 WDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFD 497 (508)
Q Consensus 461 ~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~ 497 (508)
.++.+...+..++.||||++.-+.+|=++.|-++|+.
T Consensus 354 ~~~~r~~~gi~~~liRlSvGlE~~~DLi~Dl~~AL~~ 390 (393)
T d1n8pa_ 354 PKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQ 390 (393)
T ss_dssp CTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHhcCCCcCEEEEEeccCCHHHHHHHHHHHHHH
Confidence 1122222334578999999987666666666666553
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.61 E-value=5.6e-15 Score=152.90 Aligned_cols=333 Identities=14% Similarity=0.080 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA 163 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~ 163 (508)
.-+.++++.+|+++|.+. +++++++|.|+.+++.++ .++|++|+.... +. .........|+....+..+..
T Consensus 75 pt~~~lE~~~a~l~G~e~----al~~~SGt~An~~a~~~l-~~~Gd~Vi~~~~-f~---~~~~~i~~~g~~~~~~~~~~~ 145 (456)
T d1c7ga_ 75 ENFYHLEKTVKELFGFKH----IVPTHQGRGAENLLSQLA-IKPGQYVAGNMY-FT---TTRFHQEKNGATFVDIVRDEA 145 (456)
T ss_dssp HHHHHHHHHHHHHHCCSE----EEEESSHHHHHHHHHHHH-CCTTEEEEESSC-CH---HHHHHHHHTTEEEEECBCGGG
T ss_pred chHHHHHHHHHHHhCCCe----EEECCCHHHHHHHHHHHh-cCCCCeEecCcc-hH---HHHHHHHHcCceeeecccccc
Confidence 346778899999999984 588999999999999999 688999886543 22 222223345777766654321
Q ss_pred cCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCC-ccccCHHHHHHHHcCCccccccCCCCCC
Q 010538 164 VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFS-GSRFNLDLINIMKKNPERILEISPFSKG 242 (508)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~t-G~~~~i~~i~~l~~~~~~~~~~~~~~~~ 242 (508)
.... ..-......|+++++ ++|++. ..+.+.++++...+|+. |...|++.|.++.+ +|+++
T Consensus 146 ~~~~-----~~~~~~~~~d~~~le--~~I~~~--~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~---------~a~~~ 207 (456)
T d1c7ga_ 146 HDAS-----LNLPFKGDIDLNKLA--TLIKEK--GAENIAYICLAVTVNLAGGQPVSMANMRAVHE---------MASTY 207 (456)
T ss_dssp GCTT-----CCCSCTTCBCHHHHH--HHHHHH--CGGGEEEEEEESSBTTTTSBCCCHHHHHHHHH---------HHHHH
T ss_pred cccc-----ccCCccccCCHHHHH--HHhhhc--CCccceeEEeeecccccccceecHHHHHHHHH---------HHHHc
Confidence 1000 000111223688888 666432 12456788898888886 56666655544333 33349
Q ss_pred CeEEEEeccccCCC-----------CCCCCCC------CCCcEEEEeccccccCCCcceEEEEechh-Hhhhccccc-cC
Q 010538 243 RWMVLIDAAKGCVT-----------QPPDLSK------YPVDFVVMSFYKIFGYPTGLGALIMRNDA-AKLLKNTYF-SG 303 (508)
Q Consensus 243 g~~vivD~a~~~g~-----------~~~d~~~------~~~D~~~~S~~K~~g~P~G~G~l~~~~~~-~~~l~~~~~-g~ 303 (508)
|+++++|+++.++. ...++.+ ..+|++++|+||.+++|.| |+++.+++. .++++.... ++
T Consensus 208 ~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~G-G~i~~~~~~l~~~~r~~~~~~~ 286 (456)
T d1c7ga_ 208 GIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIG-GFLCMNDEEMFSAAKELVVVYE 286 (456)
T ss_dssp TCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSC-EEEEESCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcchhhcchhhhcccccccCCCChhhhccccccccccEEEeccccccccce-eEEEcCCHHHHHHHHHhccccC
Confidence 99999999986432 1112111 1379999999998886766 888777653 333332211 11
Q ss_pred ceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEE
Q 010538 304 GTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTI 383 (508)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~ 383 (508)
+ ....|..+...+.++...+... .+. +..++-.+..++|.+.|.+. ++.+
T Consensus 287 g--------------------~~~~g~~~~~~~~a~a~~l~e~--~~~-~~l~~r~~~~~~L~e~L~~~-------g~~v 336 (456)
T d1c7ga_ 287 G--------------------MPSYGGLAGRDMEAMAIGLREA--MQY-EYIEHRVKQVRYLGDKLREA-------GVPI 336 (456)
T ss_dssp C--------------------CTTTTTCCHHHHHHHHHHHHHH--TCH-HHHHHHHHHHHHHHHHHHHT-------TCCB
T ss_pred C--------------------CcccchhhHHHHHHHHHHHHHh--cCH-HHHHHHHHHHHHHHHHHHhc-------cCCc
Confidence 0 0112344444455544444432 223 33444566778999999887 5666
Q ss_pred ecCCCCCcccCCCCceEEEEee----CCCCCccCH-HHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCC
Q 010538 384 YGTYTSEVSYHDTGSMVSFNLK----RPDGSWFGY-REVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGH 458 (508)
Q Consensus 384 ~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~~~-~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~ 458 (508)
+.+.. .+.+.+... ......+.. ..+.+.+.+.||...... ... .+.+ ...|..+
T Consensus 337 v~p~g--------~~~v~vda~~~~~~i~~~~~~~~~~~~~l~~~~GIr~~~~g---~~~----~~~~-----~~~g~~~ 396 (456)
T d1c7ga_ 337 VEPTG--------GHAVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSMERG---IVS----AGRS-----KETGENH 396 (456)
T ss_dssp CSSCC--------SSEEEEEHHHHCTTSCGGGCHHHHHHHHHHHHHSEECEEES---HHH----HCBC-----SSSCCBC
T ss_pred ccCCC--------CcceeEechhhccCCCcccccHHHHHHHHHHHhCeeecccC---ccc----cccC-----CcccCcc
Confidence 65543 455554422 222222211 234455567788643211 000 0000 0011100
Q ss_pred ccCCCccccCCCCCceEEEecCC-CCCHHHHHHHHHhhhhhhhhhhh
Q 010538 459 VCWDDNDIIHGKPTGAIRVSFGY-MSTFEDAKVNRCSSFDFVNFSQF 504 (508)
Q Consensus 459 ~~~~~~~~~~~~~~~~iRis~~~-~~t~eev~~l~~~~~~~~~~~~~ 504 (508)
.-....+|+++.- -.|.++||++++.|+++.+..+.
T Consensus 397 ----------~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~~~~~ 433 (456)
T d1c7ga_ 397 ----------RPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKED 433 (456)
T ss_dssp ----------CCSCCEEEEECCTTSCCHHHHHHHHHHHHHHHTTGGG
T ss_pred ----------CCccceEEEecCcccCCHHHHHHHHHHHHHHHhhhhh
Confidence 0124579999873 34999999999999998765443
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.50 E-value=4.1e-12 Score=128.33 Aligned_cols=326 Identities=13% Similarity=0.106 Sum_probs=202.1
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+ .|--+|.+++++.++. ......+... . ......+.+.+.+......+ .+.|++++
T Consensus 35 dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~-~~~~~~~~~~-~-----~~~~~~la~~l~~~~~~~~~--~v~f~~sG 105 (387)
T d1vefa1 35 EGNEYIDCVGGYGVANLGHGNPEVVEAVKRQA-ETLMAMPQTL-P-----TPMRGEFYRTLTAILPPELN--RVFPVNSG 105 (387)
T ss_dssp TSCEEEESSHHHHTCTTCBTCHHHHHHHHHHH-HHCCCCCTTS-C-----CHHHHHHHHHHHHTSCTTEE--EEEEESSH
T ss_pred CCCEEEEcchhHHhhhhcCCcHHHHHHHHHHH-Hhhccccccc-C-----CchHHHHHHHhhhhccccce--eeccccCc
Confidence 7788999754 4555899998876644 3322222211 1 12223333344444444334 79999999
Q ss_pred HHHHHHHHhhcC-CCCCCeEEEecccc-cchHHHHHHH----HhcC-----CeEEEEccCCccCcccccccccccccccc
Q 010538 113 TAALKLVGEAFP-WSHQSSYMYTMENH-NSVLGIREYA----LSQG-----AAAFAIDVEEAVDNDGLSESLVTSTKISL 181 (508)
Q Consensus 113 t~al~~~~~~l~-~~~g~~vl~~~~~h-~s~~~~~~~~----~~~G-----~~v~~v~~~~~~~~~~l~~~~~~~~~~~~ 181 (508)
++|+..++.... ......|+.....| .......... .+.+ ..+..+|.+
T Consensus 106 seA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~~-------------------- 165 (387)
T d1vefa1 106 TEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYN-------------------- 165 (387)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTT--------------------
T ss_pred hHHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCCC--------------------
Confidence 999988776542 23445666665433 3333332210 0000 123333332
Q ss_pred chhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecccc-CCC
Q 010538 182 LPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKG-CVT 256 (508)
Q Consensus 182 d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~-~g~ 256 (508)
|.+.++ +.+ .+++..|++.-+....|.+.+ ++++.++|++ +|+++|+|++++ +|.
T Consensus 166 d~~~l~--~~~------~~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~------------~g~llI~DEV~tGfgR 225 (387)
T d1vefa1 166 DVEALK--RAV------DEETAAVILEPVQGEGGVRPATPEFLRAAREITQE------------KGALLILDEIQTGMGR 225 (387)
T ss_dssp CHHHHH--HHC------CTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHH------------HTCEEEEECTTTTTTT
T ss_pred CHHHHH--Hhc------CCCeEEEEEECCCCCCCCccCCHHHHHHHHHHHHH------------cCceEEecccccccCc
Confidence 356666 444 356788888888888898878 6677777776 999999999996 333
Q ss_pred CCCCCC----CCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCC
Q 010538 257 QPPDLS----KYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTAS 332 (508)
Q Consensus 257 ~~~d~~----~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~ 332 (508)
.-.-.. ....|+++.+ |.+++-.-++.+..+++....+.+...++. .+-|
T Consensus 226 ~G~~~~~~~~~v~PDi~~~g--K~l~gG~~~~~~~~~~~~~~~~~~~~~g~T------------------------~~gn 279 (387)
T d1vefa1 226 TGKRFAFEHFGIVPDILTLA--KALGGGVPLGVAVMREEVARSMPKGGHGTT------------------------FGGN 279 (387)
T ss_dssp TSSSSTHHHHTCCCSEEEEC--GGGGTTSSCEEEEEEHHHHHTSCTTSSCCS------------------------STTC
T ss_pred cCCCcccccCCcCCceeeec--ccCCCCccccccccceeeeeccccCCcccc------------------------CCCC
Confidence 322111 2247999998 866521126788888887665555432211 1225
Q ss_pred hhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCcc
Q 010538 333 FLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWF 412 (508)
Q Consensus 333 ~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 412 (508)
..+.++..+.++.+.+ .++.++..++.+++.+.|+++.+ +.+.-+ .. .+.+..+.+.+...
T Consensus 280 Pla~aaa~a~L~~l~~---~~~~~~v~~~g~~l~~~L~~l~~----~~v~~v--rg-------~Gl~~~ie~~~~~~--- 340 (387)
T d1vefa1 280 PLAMAAGVAAIRYLER---TRLWERAAELGPWFMEKLRAIPS----PKIREV--RG-------MGLMVGLELKEKAA--- 340 (387)
T ss_dssp HHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHTSCC----TTEEEE--EE-------ETTEEEEEESSCSH---
T ss_pred cchhhhcccchhhccc---ccccchHhhhhHHHHHHHHhcCC----CceEEE--ee-------cceEEEEEEeCCch---
Confidence 5666677777887765 45678888999999999988743 222211 11 26777788865322
Q ss_pred CHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHH
Q 010538 413 GYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNR 492 (508)
Q Consensus 413 ~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~ 492 (508)
..+.+.+.++|+.+... ..+.+|+++.+-.|++|++.++
T Consensus 341 --~~~~~~~~~~g~l~~~~---------------------------------------g~~~ir~~Ppl~it~~~ld~~~ 379 (387)
T d1vefa1 341 --PYIARLEKEHRVLALQA---------------------------------------GPTVIRFLPPLVIEKEDLERVV 379 (387)
T ss_dssp --HHHHHHHHHHCEECEES---------------------------------------STTEEEECCCTTCCHHHHHHHH
T ss_pred --HHHHHHHHHCCCeEEec---------------------------------------CCCEEEEECCccCCHHHHHHHH
Confidence 34677777788875431 1468999999999999999999
Q ss_pred Hhhhhhh
Q 010538 493 CSSFDFV 499 (508)
Q Consensus 493 ~~~~~~~ 499 (508)
+.+++.+
T Consensus 380 ~~i~~aL 386 (387)
T d1vefa1 380 EAVRAVL 386 (387)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988764
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.50 E-value=1.1e-13 Score=143.36 Aligned_cols=332 Identities=14% Similarity=0.049 Sum_probs=181.4
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcC------CCCCCeEEEecccccchHHHHHHHHhcCCeEEEE
Q 010538 85 IVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFP------WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAI 158 (508)
Q Consensus 85 ~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~------~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v 158 (508)
.+.++++.+++++|.+ .++|++|+|+|+.+++.++. ...+..++.....|.++..... ..|..+..+
T Consensus 76 ~~~~le~~~a~l~g~~----~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t~~~~~~---~~g~~~~~~ 148 (465)
T d1ax4a_ 76 NYYDLKDKAKELFNYD----YIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVE---LNGCKAINI 148 (465)
T ss_dssp HHHHHHHHHHHHHCCC----EEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHH---HTTCEEEEC
T ss_pred HHHHHHHHHHHHHCCC----EEEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhhhhHHHHH---HcCCeeecc
Confidence 3567788999999985 68999999999999888873 1223445556555555444333 357777666
Q ss_pred ccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCc-cccCHH---HHHHHHcCCcccc
Q 010538 159 DVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSG-SRFNLD---LINIMKKNPERIL 234 (508)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG-~~~~i~---~i~~l~~~~~~~~ 234 (508)
+........ .........|+++++ ++|++. ..+.+.+++++..+|..| ...|.+ +|.++|++
T Consensus 149 ~~~~~~~~~-----~~~~~~~~~d~~~l~--~~i~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~----- 214 (465)
T d1ax4a_ 149 VTEKAFDSE-----TYDDWKGDFDIKKLK--ENIAQH--GADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQ----- 214 (465)
T ss_dssp BCGGGGCTT-----SCCTTTTCBCHHHHH--HHHHHH--CGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHH-----
T ss_pred cccccCCCC-----CCCCccCccCHHHHH--HHHHhh--ccccccceeeccccccCceecCCHHHHHHHHHHHHH-----
Confidence 432110000 000111223678887 665432 123466777777666554 455655 45555665
Q ss_pred ccCCCCCCCeEEEEeccccCCCC-----------CCCCCC------CCCcEEEEeccccccCCCcceEEEEechhHh--h
Q 010538 235 EISPFSKGRWMVLIDAAKGCVTQ-----------PPDLSK------YPVDFVVMSFYKIFGYPTGLGALIMRNDAAK--L 295 (508)
Q Consensus 235 ~~~~~~~~g~~vivD~a~~~g~~-----------~~d~~~------~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~--~ 295 (508)
||+++++|+++..+.. ..+... ...|++++|.||.+++|. .|+++.++.... .
T Consensus 215 -------~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~-~g~l~~~~~~~~~~~ 286 (465)
T d1ax4a_ 215 -------HGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNI-GGLVAIRDNEEIFTL 286 (465)
T ss_dssp -------HTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSS-CEEEEESSCHHHHHH
T ss_pred -------cCCEEEEECcchhhhhcccccccccccccchhhhccccccccceeEeecccCccccc-ceeEeecchHHHHHh
Confidence 9999999999864321 111100 025899999999888564 588888765321 1
Q ss_pred hccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCC
Q 010538 296 LKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHE 375 (508)
Q Consensus 296 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~ 375 (508)
...... .....++.......++.++...+.+...+...++..+..++|.+.|++.
T Consensus 287 ~~~~~~----------------------~~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~l~~~L~~~--- 341 (465)
T d1ax4a_ 287 ARQRCV----------------------PMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREA--- 341 (465)
T ss_dssp HHHHHH----------------------HHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT---
T ss_pred hhcccc----------------------ccccCCCcchhhHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHhh---
Confidence 111100 0011111111112222222222223223556666777889999999887
Q ss_pred CCCceEEEecCCCCCcccCCCCceEEEEeeC----CCCCccC-HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhh
Q 010538 376 NGADVCTIYGTYTSEVSYHDTGSMVSFNLKR----PDGSWFG-YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDL 450 (508)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~-~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~ 450 (508)
++.++.+.. ...+.+.... .....+. ...+.+.+.+.||....... +. .+ .
T Consensus 342 ----g~~~v~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~GI~~~~~~~---~~----~~-----~ 397 (465)
T d1ax4a_ 342 ----GIPIQYPTG--------GHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGS---FL----LG-----R 397 (465)
T ss_dssp ----TCCBCSSCC--------SSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESH---HH----HC-----B
T ss_pred ----cCccccCCC--------cceeeeehhhhcCCCccccchhHHHHHHHHHhcCceeccccc---cc----cc-----c
Confidence 555555443 4444444322 1111111 12356667788887533210 00 00 0
Q ss_pred hhhhhcCCccCCCccccCCCCCceEEEecC-CCCCHHHHHHHHHhhhhhhhhhhh
Q 010538 451 LSNIEAGHVCWDDNDIIHGKPTGAIRVSFG-YMSTFEDAKVNRCSSFDFVNFSQF 504 (508)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~iRis~~-~~~t~eev~~l~~~~~~~~~~~~~ 504 (508)
....|. ......+.+|+++. .-.|.||+|++++.|+++++-...
T Consensus 398 ~~~~g~----------~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~~~~~ 442 (465)
T d1ax4a_ 398 DPATGE----------QKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFAT 442 (465)
T ss_dssp CTTTCS----------BCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHTT
T ss_pred ccccCC----------ccCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 000100 00112468999965 345999999999999998865443
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=6e-14 Score=145.63 Aligned_cols=334 Identities=13% Similarity=-0.004 Sum_probs=181.9
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCC---------eEEEecccccchHHHHHHHHhcCCeE
Q 010538 85 IVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQS---------SYMYTMENHNSVLGIREYALSQGAAA 155 (508)
Q Consensus 85 ~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~---------~vl~~~~~h~s~~~~~~~~~~~G~~v 155 (508)
.+.++++.+++++|.+ .+++++++|+|+.+++.++. ++++ .++.+...|.... ......|.++
T Consensus 75 ~~~~le~~~a~l~G~~----~~~~~~sGt~A~~~a~~~~~-~~g~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~G~~~ 146 (467)
T d2v1pa1 75 SYYALAESVKNIFGYQ----YTIPTHQGRGAEQIYIPVLI-KKREQEKGLDRSKMVAFSNYFFDTTQ---GHSQINGCTV 146 (467)
T ss_dssp HHHHHHHHHHHHTCCS----EEEEECSSTTTHHHHHHHHH-HHHHHHHCCCTTTCEEEESSCCHHHH---HHHHHTTCEE
T ss_pred hHHHHHHHHHHHHCCC----EEEECCCCHHHHHHHHHHHh-hccceEecCCCCcEEEEecccccccH---HHHHHcCCee
Confidence 3567789999999987 46889999999999888873 3332 3443333333333 2334468999
Q ss_pred EEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCC-ccccCHH---HHHHHHcCCc
Q 010538 156 FAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFS-GSRFNLD---LINIMKKNPE 231 (508)
Q Consensus 156 ~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~t-G~~~~i~---~i~~l~~~~~ 231 (508)
+.++.+....... ........|+++++ +.+++. ..+.++++++...++.. |...|++ +|.++|++
T Consensus 147 ~~~~~~~~~~~~~-----~~~~~~~~d~~~l~--~~i~~~--~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~-- 215 (467)
T d2v1pa1 147 RNVYIKEAFDTGV-----RYDFKGNFDLEGLE--RGIEEV--GPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKK-- 215 (467)
T ss_dssp EECBCTTTTCTTS-----CCTTTTCBCHHHHH--HHHHHH--CGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHH--
T ss_pred eeccccccccccc-----ccccccCCCHHHHH--HHHhhc--CccccceeeecceeeccccccCCHHHHHHHHHHHHH--
Confidence 8887654211100 00111123677777 555321 12457888888777766 4555555 55666665
Q ss_pred cccccCCCCCCCeEEEEeccccCCCC-----------CCCCC------CCCCcEEEEeccccccCCCcceEEEEechhHh
Q 010538 232 RILEISPFSKGRWMVLIDAAKGCVTQ-----------PPDLS------KYPVDFVVMSFYKIFGYPTGLGALIMRNDAAK 294 (508)
Q Consensus 232 ~~~~~~~~~~~g~~vivD~a~~~g~~-----------~~d~~------~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~ 294 (508)
||+++++|+++.+|.. ..++. -..+|++++|.||.+++|.| |++..+++.+.
T Consensus 216 ----------~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~g-g~i~~~~~~~~ 284 (467)
T d2v1pa1 216 ----------YDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCMKDDSFF 284 (467)
T ss_dssp ----------TTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSC-EEEEECSGGGH
T ss_pred ----------cCCEEEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCCc-eeEEecchhhh
Confidence 9999999999864321 11111 11479999999998886765 77777766543
Q ss_pred hhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccC
Q 010538 295 LLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRH 374 (508)
Q Consensus 295 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~ 374 (508)
.........+. . .......+......+.++...+. .....+..++..++.++|.+.|.+.
T Consensus 285 ~~~~~~~~~~~----------~-----~~~~~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~-- 344 (467)
T d2v1pa1 285 DVYTECRTLCV----------V-----QEGFPTYGGLEGGAMERLAVGLY---DGMNLDWLAYRIAQVQYLVDGLEEI-- 344 (467)
T ss_dssp HHHHHHHHHHH----------H-----TTSSCCCCCCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHHT--
T ss_pred hHHHhhccccc----------c-----cccCcchhhhHHHHHHHHHHHhH---HhhhHHHHHHHHHHHHHHHHHHHhc--
Confidence 22111000000 0 00001112222233333332222 2233567777788999999999886
Q ss_pred CCCCceEEEecCCCCCcccCCCCceEEEEe----eCCCCCccC-HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhh
Q 010538 375 ENGADVCTIYGTYTSEVSYHDTGSMVSFNL----KRPDGSWFG-YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSD 449 (508)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~~~~-~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~ 449 (508)
++.+..+. .+.+.+.. +......+. ...+.+.+.+.||.......+. + .
T Consensus 345 -----~~~v~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gi~~~~~g~~~-------~-----~ 398 (467)
T d2v1pa1 345 -----GVVCQQAG---------GHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFL-------L-----G 398 (467)
T ss_dssp -----TCCEEEEC---------SSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHH-------H-----C
T ss_pred -----CCcccCCC---------ccceeecchhhcCCcchhhhhhHHHHHHHHHHcCCeeecccccc-------c-----c
Confidence 34343322 22222221 222221121 1235566678888642211000 0 0
Q ss_pred hhhhhhcCCccCCCccccCCCCCceEEEecCC-CCCHHHHHHHHHhhhhhhhhhhh
Q 010538 450 LLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGY-MSTFEDAKVNRCSSFDFVNFSQF 504 (508)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~t~eev~~l~~~~~~~~~~~~~ 504 (508)
...+.+.. .......+|+++.. -.|.||||++++.|+++.+..+.
T Consensus 399 ~~~~~~~~----------~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~~~~~ 444 (467)
T d2v1pa1 399 RDPKTGKQ----------LPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAAN 444 (467)
T ss_dssp BCTTTCSB----------CCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHHHTGGG
T ss_pred cccccCCc----------cCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 00001100 01125679999753 45999999999999999865443
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=1.8e-11 Score=124.25 Aligned_cols=329 Identities=12% Similarity=0.061 Sum_probs=204.8
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..+ .|--+|.+++++.+++ ......+.. +. ......+.+.++++.+. + .+.|++++
T Consensus 39 dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~-~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~--~--~v~~~~sG 107 (404)
T d2byla1 39 EGRKYFDFLSSISAVNQGHCHPKIVNALKSQV-DKLTLTSRA-FY-----NNVLGEYEEYITKLFNY--H--KVLPMNTG 107 (404)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHH-TTCCCCCTT-EE-----ESSHHHHHHHHHHHHTC--S--EEEEESSH
T ss_pred CCCEEEEecCCHHHHhhcCCCHHHHHHHHHHH-hhCCCcccc-cc-----cchHHHHHHhhhhcccc--c--ccccccCc
Confidence 7889999644 2556899998876654 322111111 11 12234455667777655 3 78999999
Q ss_pred HHHHHHHHhhcC---------CCCCCeEEEecccccc-hHHHHHH----HHhcC-----CeEEEEccCCccCcccccccc
Q 010538 113 TAALKLVGEAFP---------WSHQSSYMYTMENHNS-VLGIREY----ALSQG-----AAAFAIDVEEAVDNDGLSESL 173 (508)
Q Consensus 113 t~al~~~~~~l~---------~~~g~~vl~~~~~h~s-~~~~~~~----~~~~G-----~~v~~v~~~~~~~~~~l~~~~ 173 (508)
++|+..++.... ......++.....+.. ....... ..+.+ ..+..+|.+
T Consensus 108 seA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~~------------ 175 (404)
T d2byla1 108 VEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYN------------ 175 (404)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECTT------------
T ss_pred cccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEeccc------------
Confidence 999988775531 1123455555443332 2221110 11111 123333332
Q ss_pred ccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEe
Q 010538 174 VTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLID 249 (508)
Q Consensus 174 ~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD 249 (508)
|.++++ +.+. .+++..|++.-+....|.+.| ++.+.++|++ +|+++|+|
T Consensus 176 --------d~~~l~--~~l~-----~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~------------~g~llI~D 228 (404)
T d2byla1 176 --------DLPALE--RALQ-----DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTR------------HQVLFIAD 228 (404)
T ss_dssp --------CHHHHH--HHHT-----STTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHH------------HTCEEEEE
T ss_pred --------CHHHHH--HhcC-----CCCeEEEEECCccCCCCCccCCHHHHHHHHHHHHh------------cCeEEEee
Confidence 345555 4442 356788888888888898887 6777777776 99999999
Q ss_pred ccccC-CCCCC--CCCC--CCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCcc
Q 010538 250 AAKGC-VTQPP--DLSK--YPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 250 ~a~~~-g~~~~--d~~~--~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
++++. |..-. -... ...|+++++ |.+++- .-+|.+++++++.+.+.+...++.
T Consensus 229 EV~tGfgR~G~~~a~~~~gv~PDi~~~g--K~l~gG~~p~~av~~~~~i~~~~~~~~~~~T------------------- 287 (404)
T d2byla1 229 EIQTGLARTGRWLAVDYENVRPDIVLLG--KALSGGLYPVSAVLCDDDIMLTIKPGEHFST------------------- 287 (404)
T ss_dssp CTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSSCCEEEEECHHHHTTSCTTSSCCS-------------------
T ss_pred ccccccccccccchhhhcCCCCCEEEEC--chhhCCCccceeeeechhhhhccCCCCCCcC-------------------
Confidence 99863 22211 1111 236999777 966521 127999999988766655422210
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEE
Q 010538 324 ELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFN 403 (508)
Q Consensus 324 ~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 403 (508)
.+-|..+.++..++++.+.+ +++.++..++.+++.+.|.++.. +.+.-+ .. .+.+..+.
T Consensus 288 -----~~gnpl~~aaa~a~L~~i~~---~~l~~~~~~~g~~l~~~l~~l~~----~~i~~v--Rg-------~Gl~~~i~ 346 (404)
T d2byla1 288 -----YGGNPLGCRVAIAALEVLEE---ENLAENADKLGIILRNELMKLPS----DVVTAV--RG-------KGLLNAIV 346 (404)
T ss_dssp -----STTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHTSCT----TTEEEE--EE-------ETTEEEEE
T ss_pred -----CCcCHHHHHHHHHHHHHHHh---cCchhhhhHhhHHHHHHHHhhcc----ccceee--ee-------cccEEEEE
Confidence 12355667777778888876 45677888899999999988742 222111 11 26677777
Q ss_pred eeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCC
Q 010538 404 LKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMS 483 (508)
Q Consensus 404 ~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 483 (508)
+.+.+.. ...++.+.+.++|+.+.+. ..+.||+++.+-.
T Consensus 347 ~~~~~~~--~~~~~~~~l~~~Gvl~~~~---------------------------------------~~~~i~l~PpL~i 385 (404)
T d2byla1 347 IKETKDW--DAWKVCLRLRDNGLLAKPT---------------------------------------HGDIIRFAPPLVI 385 (404)
T ss_dssp ECCCSSC--CHHHHHHHHHHTTEECEEE---------------------------------------ETTEEEECCCTTC
T ss_pred EecCCch--hHHHHHHHHHhCCeEEecC---------------------------------------CCCEEEEECCcCC
Confidence 7654332 3456788888999997652 1468999999889
Q ss_pred CHHHHHHHHHhhhhhhh
Q 010538 484 TFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 484 t~eev~~l~~~~~~~~~ 500 (508)
|++|+|.+++.+.+.+.
T Consensus 386 t~~~id~~~~~l~~al~ 402 (404)
T d2byla1 386 KEDELRESIEIINKTIL 402 (404)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999887653
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.47 E-value=9.1e-11 Score=118.96 Aligned_cols=339 Identities=10% Similarity=0.010 Sum_probs=191.6
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..+ .|--+|.+++++.++...-.+.+.. . .......+.+.++++.+. + .+.|+.++
T Consensus 37 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~--~--~v~~~~sg 105 (404)
T d1z7da1 37 NDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRA-F------FSVPLGICERYLTNLLGY--D--KVLMMNTG 105 (404)
T ss_dssp TCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTT-S------EEHHHHHHHHHHHHHHTC--S--EEEEESSH
T ss_pred CCCEEEEccccHHHHhhhcCcHHHHHHHHHHHHhCCCcccc-c------chHHHHHHHHhhhhcccc--c--eeeeeccc
Confidence 7889999643 2445899998876654321111111 1 122345566677777765 3 68899999
Q ss_pred HHHHHHHHhhcC---------CCCCCeEEEecccccchHHH-HHHHHhcCCeEEEEccCCc-cCcccccccccccccccc
Q 010538 113 TAALKLVGEAFP---------WSHQSSYMYTMENHNSVLGI-REYALSQGAAAFAIDVEEA-VDNDGLSESLVTSTKISL 181 (508)
Q Consensus 113 t~al~~~~~~l~---------~~~g~~vl~~~~~h~s~~~~-~~~~~~~G~~v~~v~~~~~-~~~~~l~~~~~~~~~~~~ 181 (508)
++|+..++.... ......++.....+...... ..............|.... ... -..
T Consensus 106 s~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~ 173 (404)
T d1z7da1 106 AEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKV------------PYD 173 (404)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEE------------CTT
T ss_pred cchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCCCCcccccc------------ccc
Confidence 999887664421 11223455554333222211 1111101111111111100 000 001
Q ss_pred chhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecccc-CCC
Q 010538 182 LPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKG-CVT 256 (508)
Q Consensus 182 d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~-~g~ 256 (508)
+.+.++ ..+ ..+++..|++..+....|.+.| ++++.++|++ +|+++|+|++++ +|.
T Consensus 174 ~~~~l~--~~~-----~~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~------------~g~llI~DEV~tGfgR 234 (404)
T d1z7da1 174 DLEALE--EEL-----KDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKK------------YNVLFVADEVQTGLGR 234 (404)
T ss_dssp CHHHHH--HHH-----TSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHH------------TTCEEEEECTTTTTTT
T ss_pred hHHHHH--HHh-----cCCCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHH------------cCCEEEEEcCccCCCc
Confidence 233444 222 1357788999888888899988 7888888887 999999999996 322
Q ss_pred CC--CCCC--CCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCC
Q 010538 257 QP--PDLS--KYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTA 331 (508)
Q Consensus 257 ~~--~d~~--~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 331 (508)
.- .-.. ....|+++++ |.+++- .-+|.+++++++.+.+.+...++. .+-
T Consensus 235 tG~~~~~e~~gv~PDivt~g--K~l~gG~~p~~~v~~~~~i~~~~~~~~~~~T------------------------~~g 288 (404)
T d1z7da1 235 TGKLLCVHHYNVKPDVILLG--KALSGGHYPISAVLANDDIMLVIKPGEHGST------------------------YGG 288 (404)
T ss_dssp TSSSSGGGGGTCCCSEEEEC--GGGGTTSSCCEEEEECHHHHTTCCTTCCCCT------------------------TTT
T ss_pred ccccccccccCCCCCEEEEc--ccccCCCCCcccccchHHHHccCCCCCcCcC------------------------CCC
Confidence 11 1111 2247999777 976621 127999999998766655422210 122
Q ss_pred ChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEE-EecCCCCCcccCCCCceEEEEeeCCCCC
Q 010538 332 SFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCT-IYGTYTSEVSYHDTGSMVSFNLKRPDGS 410 (508)
Q Consensus 332 ~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 410 (508)
|..+.++..++++.+.+. ...++..++.+++.+.+.+... ..+.+. +.+ .+.+..+.+.+..
T Consensus 289 npl~~aaa~a~L~~~~~~---~~~~~~~~~~~~~~~~l~~~~~--~~~~v~~vrg----------~Gl~~~i~~~~~~-- 351 (404)
T d1z7da1 289 NPLAASICVEALNVLINE---KLCENAEKLGGPFLENLKRELK--DSKIVRDVRG----------KGLLCAIEFKNEL-- 351 (404)
T ss_dssp CHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHT--TCTTEEEEEE----------ETTEEEEEECTTT--
T ss_pred Ccchhhhhhhhhhhhhcc---hhhhhhccchhHHHHHHHHHHh--cCCCeEEEEe----------eCcEEEEEEcCCc--
Confidence 455666666777776653 3445555555555544433210 002222 211 2677888876532
Q ss_pred ccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHH
Q 010538 411 WFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKV 490 (508)
Q Consensus 411 ~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~ 490 (508)
....++.+.+.++|+.+++. ..+.||+++.+-.|++|+++
T Consensus 352 -~~~~~~~~~l~~~Gl~~~~~---------------------------------------~~~~ir~~Ppl~it~~~id~ 391 (404)
T d1z7da1 352 -VNVLDICLKLKENGLITRDV---------------------------------------HDKTIRLTPPLCITKEQLDE 391 (404)
T ss_dssp -CCHHHHHHHHHHTTEECCEE---------------------------------------TTTEEEECCCTTCCHHHHHH
T ss_pred -ccHHHHHHHHHhCCeEEecC---------------------------------------CCCEEEEECCcCCCHHHHHH
Confidence 23456788888999997642 14679999998899999999
Q ss_pred HHHhhhhhhhhh
Q 010538 491 NRCSSFDFVNFS 502 (508)
Q Consensus 491 l~~~~~~~~~~~ 502 (508)
+++.+.+.++.+
T Consensus 392 ~~~~l~~alk~~ 403 (404)
T d1z7da1 392 CTEIIVKTVKFF 403 (404)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999887654
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=7.8e-12 Score=127.91 Aligned_cols=351 Identities=10% Similarity=0.052 Sum_probs=206.8
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..+ .|--+|.+++++.++...-.+..+... .......+.+++.+......+ .+.|++++
T Consensus 41 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~------~~~~~~~l~~~l~~~~~~~~~--~v~f~~sG 112 (429)
T d1s0aa_ 41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGI------THAPAIELCRKLVAMTPQPLE--CVFLADSG 112 (429)
T ss_dssp TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSE------ECHHHHHHHHHHHHHSCTTCC--EEEEESSH
T ss_pred CCCEEEECcccHHHHhhcCCcHHHHHHHHHHHHhcCCcccCCc------cchHHHHHHHHHHhhhccCcc--eeeecccc
Confidence 7788999633 333488888887664432111111111 112234445667777776666 89999999
Q ss_pred HHHHHHHHhhcC------CCCCCeEEEecccc-cchHHHHHHHHh----------cCCeEEEEccCCccCcccccccccc
Q 010538 113 TAALKLVGEAFP------WSHQSSYMYTMENH-NSVLGIREYALS----------QGAAAFAIDVEEAVDNDGLSESLVT 175 (508)
Q Consensus 113 t~al~~~~~~l~------~~~g~~vl~~~~~h-~s~~~~~~~~~~----------~G~~v~~v~~~~~~~~~~l~~~~~~ 175 (508)
++|+..++.... ...+.+|+.....| ............ ........|..........
T Consensus 113 seA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 186 (429)
T d1s0aa_ 113 SVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEW------ 186 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCC------
T ss_pred ccchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCcccccccccccccccccccc------
Confidence 999987765432 12334676665443 333332221100 0111222222211000000
Q ss_pred ccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCC-CCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEec
Q 010538 176 STKISLLPIQRRKGASFPERDPAGDAYNLFAFPSEC-NFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDA 250 (508)
Q Consensus 176 ~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~-n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~ 250 (508)
. ..+++.++ +.+ ....+++..|++.-+. +..|...| ++.|.++|++ +|+++|+|+
T Consensus 187 ~---~~~~~~~~--~~~---~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~------------~gillI~DE 246 (429)
T d1s0aa_ 187 D---ERDMVGFA--RLM---AAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDR------------EGILLIADE 246 (429)
T ss_dssp C---GGGGHHHH--HHH---HHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHH------------HTCEEEEEC
T ss_pred c---hhhhhhhh--hhh---hhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHH------------cCcceehhh
Confidence 0 00223332 111 1124567777777554 44556554 4466666665 999999999
Q ss_pred cccC-CCCCCCC----CCCCCcEEEEecccccc-CCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccc
Q 010538 251 AKGC-VTQPPDL----SKYPVDFVVMSFYKIFG-YPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEE 324 (508)
Q Consensus 251 a~~~-g~~~~d~----~~~~~D~~~~S~~K~~g-~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 324 (508)
++.. |....-. -....|+++.+ |.++ |-.-+|++++++++.+.+.+.-.+.
T Consensus 247 V~tGfGRtG~~~~~~~~~v~PDi~~~g--K~l~gG~~p~~av~~~~~i~~~~~~~~~~~--------------------- 303 (429)
T d1s0aa_ 247 IATGFGRTGKLFACEHAEIAPDILCLG--KALTGGTMTLSATLTTREVAETISNGEAGC--------------------- 303 (429)
T ss_dssp TTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTSSSCCEEEEECHHHHHHHHTSTTSS---------------------
T ss_pred ccccccccccccccccceecccccccc--cccccccccccchhhHHHHHhccCCCCCcc---------------------
Confidence 9873 3221111 12247999998 8654 2112799999998876554321110
Q ss_pred cccCC--CCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEE-EecCCCCCcccCCCCceEE
Q 010538 325 LFEDG--TASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCT-IYGTYTSEVSYHDTGSMVS 401 (508)
Q Consensus 325 ~~~~g--t~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~ 401 (508)
....+ +-|..++++..+.++.+.+ +++..+..++.++|++.|+++.. .+.+. +-+ ++.+..
T Consensus 304 ~~~~~T~~gnp~~~aaa~a~L~~i~~---~~~~~~~~~~g~~l~~~L~~l~~---~~~v~~vrg----------~Gl~~~ 367 (429)
T d1s0aa_ 304 FMHGPTFMGNPLACAAANASLAILES---GDWQQQVADIEVQLREQLAPARD---AEMVADVRV----------LGAIGV 367 (429)
T ss_dssp CSCCCTTTTCHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHGGGGG---CTTEEEEEE----------ETTEEE
T ss_pred eeecCCCCCCcccchhhhcccccccc---ccccchhhHHHHHHHHHHHHhcc---CCceEEEee----------cccEEE
Confidence 01112 2345667777778888766 56788999999999999987632 12222 111 267778
Q ss_pred EEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCC
Q 010538 402 FNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGY 481 (508)
Q Consensus 402 ~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~ 481 (508)
+.+.... ....+.+.+.++|+.+++. .+.+|+++.+
T Consensus 368 ~e~~~~~----~~~~~~~~~~~~Gl~~~~~----------------------------------------g~~i~~~Ppl 403 (429)
T d1s0aa_ 368 VETTHPV----NMAALQKFFVEQGVWIRPF----------------------------------------GKLIYLMPPY 403 (429)
T ss_dssp EEESSCB----CHHHHHHHHHHTTEECCCB----------------------------------------TTEEEECCCT
T ss_pred EEecCcc----cHHHHHHHHHHCCcEEEec----------------------------------------CCEEEEeCCc
Confidence 8876542 3456888899999997652 4689999998
Q ss_pred CCCHHHHHHHHHhhhhhhhhhhhcc
Q 010538 482 MSTFEDAKVNRCSSFDFVNFSQFLN 506 (508)
Q Consensus 482 ~~t~eev~~l~~~~~~~~~~~~~~~ 506 (508)
-.|++|||++++++.+.++.+-|++
T Consensus 404 ~it~~eid~~~~~l~~al~e~~~~~ 428 (429)
T d1s0aa_ 404 IILPQQLQRLTAAVNRAVQDETFFC 428 (429)
T ss_dssp TCCHHHHHHHHHHHHHHTSSGGGBC
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhhc
Confidence 8999999999999999998888876
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=99.45 E-value=1.1e-11 Score=127.55 Aligned_cols=353 Identities=12% Similarity=-0.005 Sum_probs=213.3
Q ss_pred CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcC------
Q 010538 51 LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFP------ 124 (508)
Q Consensus 51 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~------ 124 (508)
...|.+++.+.+ +++. -.|......+...-+.+-+...+++++.|.+.. +.-.-.|+|.+...+..+..
T Consensus 76 hy~P~v~~~~~~-~~Ta--YTPYQPaEiSQG~LQalfEfQtmi~eLTGMdva--NaS~yDGatA~aeA~~ma~r~~~~~~ 150 (471)
T d1wyub1 76 KYNPKLHEEAAR-LFAD--LHPYQDPRTAQGALRLMWELGEYLKALTGMDAI--TLEPAAGAHGELTGILIIRAYHEDRG 150 (471)
T ss_dssp CCCCHHHHHHHH-TTSS--CCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEE--ECCCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCcchhhhHHH-HHhc--cCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcc--ccccchHHHHHHHHHHHHHHHhhhcc
Confidence 456777777654 4322 134431123445677778899999999999755 44455666654443333221
Q ss_pred -CCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCce
Q 010538 125 -WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYN 203 (508)
Q Consensus 125 -~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~ 203 (508)
......++.....+...... ....+.+++.++.+..+.. +.+.+. .. .++++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---------------~~~~~~--~~------~~~~~a 204 (471)
T d1wyub1 151 EGRTRRVVLVPDSAHGSNPAT---ASMAGYQVREIPSGPEGEV---------------DLEALK--RE------LGPHVA 204 (471)
T ss_dssp CTTTCCEEEEETTSCTHHHHH---HHHTTCEEEEECBCTTSSB---------------CHHHHH--HH------CSTTEE
T ss_pred cccccccccCCcccccceeee---eecccceeecccccccccc---------------cchhhh--hh------hhcccc
Confidence 11112233344333333222 2335788888887655544 344444 22 246778
Q ss_pred EEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC-CCCCCCCCCCcEEEEeccccccCC--
Q 010538 204 LFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT-QPPDLSKYPVDFVVMSFYKIFGYP-- 280 (508)
Q Consensus 204 lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~-~~~d~~~~~~D~~~~S~~K~~g~P-- 280 (508)
.+++..+++.-+.....+++.+++|+ .|..+++|++..... ........+.|+++...|+.||.|
T Consensus 205 ~v~v~~p~~~g~~e~~~~~~~~~~h~------------~g~~~~~~~~~~~~~~~l~~p~~~g~div~vg~~q~~G~P~~ 272 (471)
T d1wyub1 205 ALMLTNPNTLGLFERRILEISRLCKE------------AGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHG 272 (471)
T ss_dssp EEEECSSCTTSCCCTTHHHHHHHHHH------------HTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCT
T ss_pred ceeeccCCCcccccchhhhhHHHHHh------------ccccccccccchhhhhhccccCcccccccccccccccccccc
Confidence 88888876665555568899999997 788888887643321 122233447899989888866544
Q ss_pred ---CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHH
Q 010538 281 ---TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRH 357 (508)
Q Consensus 281 ---~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~ 357 (508)
+|+|++-+++++...+.-.+.+.+...+.. ...+..--+|...+|.+.....+...-+.++...|++++.++
T Consensus 273 ~GGP~~G~~a~~~~~~R~~PGRiV~~~~~~~~~-----~~~REqhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~ 347 (471)
T d1wyub1 273 GGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYL-----DFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAAL 347 (471)
T ss_dssp TSCCCCCCEEECGGGGGGCCSCEEEECSSCEEE-----ECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccceeehhhhhccCCCceecCCCccccc-----cCCCcccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 248999999988765543333322110000 001111123334455544333333445777888899999999
Q ss_pred HHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCch
Q 010538 358 IASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPG 437 (508)
Q Consensus 358 ~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~ 437 (508)
+.+.+.|+++.|+.. |+++..+... -+-+.+..+. + ++..++.+.|.++|+.-....+
T Consensus 348 ~~~~A~Yla~~L~~~-------G~~~~~~~~f-------f~EFvv~~~~--~--~~~~~i~k~L~~~G~~~~~~~~---- 405 (471)
T d1wyub1 348 AVLNARYLKELLKEK-------GYRVPYDGPS-------MHEFVAQPPE--G--FRALDLAKGLLELGFHPPTVYF---- 405 (471)
T ss_dssp HHHHHHHHHHHHHHT-------TCBCSSCSSC-------CSCEEEBCST--T--CCHHHHHHHHHHTTCCCCEESC----
T ss_pred HHHHHHHHHHHHhhc-------CceeccCcce-------eeEEeecCCC--C--CCHHHHHHHHHHcCCCCCcccC----
Confidence 999999999999763 6776544321 2223333322 1 3455688989899996422111
Q ss_pred HHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhh
Q 010538 438 ACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 438 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~ 503 (508)
....++.+-|++.--+|.+|||+|+++|+++++..+
T Consensus 406 ------------------------------p~~~~~~llv~vTE~~tkedID~lv~aL~~i~~e~~ 441 (471)
T d1wyub1 406 ------------------------------PLIVKEALMVEPTETEAKETLEAFAEAMGALLKKPK 441 (471)
T ss_dssp ------------------------------STTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTSCH
T ss_pred ------------------------------cCCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHhhH
Confidence 111257899999999999999999999999988654
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=4.1e-11 Score=122.40 Aligned_cols=354 Identities=10% Similarity=0.028 Sum_probs=199.2
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhcccc-CCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCC
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVY-GNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g 111 (508)
++.-|||..+. |--+|.+++++.++. .... ..+... ..+...++-+.+.+++.....+ .+.|+++
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~-~~~~~~~~~~~------~~~~~~~la~~l~~~~p~~~~~-~v~f~~s 109 (425)
T d1sffa_ 38 EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQL-KKLSHTCFQVL------AYEPYLELCEIMNQKVPGDFAK-KTLLVTT 109 (425)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHT-TTCSCCCTTTE------ECHHHHHHHHHHHHHSSCSSCE-EEEEESS
T ss_pred CCCEEEEcCcCHHhhcccCCcHHHHHHHHHHH-hhcCCcccccc------cCcHHHHHHHHHHhhhhhcccc-eeeeecc
Confidence 78889997553 445889988876644 2211 111111 1223444566777777544321 6899999
Q ss_pred hHHHHHHHHhhcC-CCCCCeEEEecccccc-hHHHHHHHHhc-----C-----CeEEEEccCCccCcccccccccccccc
Q 010538 112 ATAALKLVGEAFP-WSHQSSYMYTMENHNS-VLGIREYALSQ-----G-----AAAFAIDVEEAVDNDGLSESLVTSTKI 179 (508)
Q Consensus 112 ~t~al~~~~~~l~-~~~g~~vl~~~~~h~s-~~~~~~~~~~~-----G-----~~v~~v~~~~~~~~~~l~~~~~~~~~~ 179 (508)
+++|+..++.... ......|+.....|-. ........... + ......+... ...+.. ....
T Consensus 110 GseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~ 182 (425)
T d1sffa_ 110 GSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPC-PLHGIS------EDDA 182 (425)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCB-GGGTBC------HHHH
T ss_pred ccchhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCcc-cccccc------chhh
Confidence 9999988766542 2345667766554443 33332221000 0 1111111111 000000 0000
Q ss_pred ccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCH----HHHHHHHcCCccccccCCCCCCCeEEEEeccccC-
Q 010538 180 SLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNL----DLINIMKKNPERILEISPFSKGRWMVLIDAAKGC- 254 (508)
Q Consensus 180 ~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i----~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~- 254 (508)
..+.+.+. .. .....++..|++..+....|.+.|- +.|.++|++ +|+++|+|++++.
T Consensus 183 ~~~~~~~~--~~----~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~------------~gillI~DEV~tG~ 244 (425)
T d1sffa_ 183 IASIHRIF--KN----DAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDE------------HGIMLIADEVQSGA 244 (425)
T ss_dssp HHHHHHHH--HH----TCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHH------------HTCEEEEECTTTTT
T ss_pred HHHHHHHH--Hh----cccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHH------------cCceEEeccccccC
Confidence 00111111 00 1123567888888888888887763 455555555 9999999999974
Q ss_pred CCCCC----CCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCC
Q 010538 255 VTQPP----DLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGT 330 (508)
Q Consensus 255 g~~~~----d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt 330 (508)
|..-. +.-....|+++.+ |.+++-..+|.++++++..+.+.+...++. .+
T Consensus 245 gR~g~~~a~~~~gv~PDi~~~g--K~l~gG~P~~av~~~~~i~~~~~~~~~~~T------------------------~~ 298 (425)
T d1sffa_ 245 GRTGTLFAMEQMGVAPDLTTFA--KSIAGGFPLAGVTGRAEVMDAVAPGGLGGT------------------------YA 298 (425)
T ss_dssp TTTSSSSGGGGTTSCCSEEEEC--GGGGTSSCCEEEEEEHHHHTTSCTTSBCCS------------------------SS
T ss_pred CCcchhhHHHhcCCCccceecc--cccCCCcceEEEEEcHHHHHhhCCCCCCCC------------------------CC
Confidence 32211 1112347999987 966631228999999998766554422210 12
Q ss_pred CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceE-EEecCCCCCcccCCCCceEEEEeeCC-C
Q 010538 331 ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVC-TIYGTYTSEVSYHDTGSMVSFNLKRP-D 408 (508)
Q Consensus 331 ~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 408 (508)
-|..++++..++|+.+.+. .+.++...+.+++.+.++++... .+.+ .+.+ .+.+..+.+... .
T Consensus 299 gnpl~~aaa~a~L~~i~~~---~~~~~~~~~g~~l~~~l~~~~~~--~~~v~~vrg----------~Gl~~~i~f~~~~~ 363 (425)
T d1sffa_ 299 GNPIACVAALEVLKVFEQE---NLLQKANDLGQKLKDGLLAIAEK--HPEIGDVRG----------LGAMIAIELFEDGD 363 (425)
T ss_dssp SCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHT--CTTEEEEEE----------ETTEEEEEEBGGGC
T ss_pred cCHHHHHHHHHHHHHHHHh---hhhhhhhhhhhhhhhhhhhhHhh--CCceEEEEc----------cccEEEEEEeccCc
Confidence 3455677777788887764 45566667777777666543110 0122 2221 166777776421 1
Q ss_pred CCccC---HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCH
Q 010538 409 GSWFG---YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTF 485 (508)
Q Consensus 409 ~~~~~---~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ 485 (508)
....+ ...+.+.+.++||.+.++. ...+.||+++.+-.|+
T Consensus 364 ~~~~~~~~~~~~~~~l~~~Gvl~~~~g-------------------------------------~~~n~i~~~PpL~it~ 406 (425)
T d1sffa_ 364 HNKPDAKLTAEIVARARDKGLILLSCG-------------------------------------PYYNVLRILVPLTIED 406 (425)
T ss_dssp TTSBCHHHHHHHHHHHHHTTEECEEES-------------------------------------TTSCEEEECCCTTCCH
T ss_pred cCCccHHHHHHHHHHHHHCCCEEeccC-------------------------------------CCCCEEEEECCCCCCH
Confidence 11111 2346777888999876531 0257899999999999
Q ss_pred HHHHHHHHhhhhhhhhhh
Q 010538 486 EDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 486 eev~~l~~~~~~~~~~~~ 503 (508)
+||+.+++++++.++.++
T Consensus 407 ~eid~~l~~l~~al~eik 424 (425)
T d1sffa_ 407 AQIRQGLEIISQCFDEAK 424 (425)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999998877653
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.37 E-value=2.6e-11 Score=123.94 Aligned_cols=334 Identities=13% Similarity=0.082 Sum_probs=190.5
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|||..+. |--+|.+++++.+++ ... ...... ......+.+.+.+.... .+ .+.|++++
T Consensus 50 ~G~~ylD~~~~~~~~~lGh~hp~i~~ai~~~~-~~~---~~~~~~-----~~~~~~la~~~~~~~~~-~~--~v~f~~sG 117 (427)
T d2gsaa_ 50 DGNRYIDYVGTWGPAICGHAHPEVIEALKVAM-EKG---TSFGAP-----CALENVLAEMVNDAVPS-IE--MVRFVNSG 117 (427)
T ss_dssp TSCEEEESSGGGTTTTTCBTCHHHHHHHHHHH-TTC---SCCSSC-----CHHHHHHHHHHHHHSTT-CS--EEEEESSH
T ss_pred CCCEEEEechhHHHHhccCCcHHHHHHHHHHH-Hhc---Cccccc-----hhHHHHHHHHHHhhCCc-cc--cccccCCc
Confidence 78889997543 334899998876654 221 111111 12233445566666553 34 78999999
Q ss_pred HHHHHHHHhhcC-CCCCCeEEEecccccc-hHHHH----HHHHhcCC------------eEEEEccCCccCccccccccc
Q 010538 113 TAALKLVGEAFP-WSHQSSYMYTMENHNS-VLGIR----EYALSQGA------------AAFAIDVEEAVDNDGLSESLV 174 (508)
Q Consensus 113 t~al~~~~~~l~-~~~g~~vl~~~~~h~s-~~~~~----~~~~~~G~------------~v~~v~~~~~~~~~~l~~~~~ 174 (508)
++|+..++.... ......|+.....|-+ ..... ......+. ....+|.
T Consensus 118 seA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-------------- 183 (427)
T d2gsaa_ 118 TEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPY-------------- 183 (427)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECT--------------
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccCc--------------
Confidence 999998876542 2345677766544422 11110 00011111 1111111
Q ss_pred cccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEec
Q 010538 175 TSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDA 250 (508)
Q Consensus 175 ~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~ 250 (508)
.|++.++ +.+++. ..+...|++..+....|.+.| ++.|.++|++ +|+++|+|+
T Consensus 184 ------~~~~~le--~~~~~~---~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~------------~~~llI~DE 240 (427)
T d2gsaa_ 184 ------NDLEAVK--ALFAEN---PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLE------------HDALLVFDE 240 (427)
T ss_dssp ------TCHHHHH--HHHTTS---TTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHH------------TTCEEEEEC
T ss_pred ------chHHHHH--HHHHhC---CCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHH------------hceeeeecc
Confidence 1456666 555432 356788888888888899998 8888888887 999999999
Q ss_pred cccCC-CCCC---CCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccc
Q 010538 251 AKGCV-TQPP---DLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELF 326 (508)
Q Consensus 251 a~~~g-~~~~---d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 326 (508)
+++.. .-.. +.-....|+++++ |.+|+-.-+|.++++++..+.+.+.- ..+
T Consensus 241 v~tG~r~g~~~~~~~~gi~PDi~~~g--K~lggG~p~~a~~~~~~i~~~~~~~~-----------------------~~~ 295 (427)
T d2gsaa_ 241 VMTGFRIAYGGVQEKFGVTPDLTTLG--KIIGGGLPVGAYGGKREIMQLVAPAG-----------------------PMY 295 (427)
T ss_dssp TTTBTTTBTTCHHHHTTCCCSEEEEC--GGGGTTSCCEEEEECHHHHTTBTTTS-----------------------SBC
T ss_pred ccccceecccchHHhcCCCHHHHhhh--hccCCCcceeeeeehHHHHHHhcccC-----------------------CCc
Confidence 99642 1100 0011247999998 75552111578888998876655420 001
Q ss_pred cCC--CCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEe
Q 010538 327 EDG--TASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNL 404 (508)
Q Consensus 327 ~~g--t~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 404 (508)
..+ +.|..++++..++++.+.+. ++.+++.++.++|.+.|+++....+. .+.+.+. ++++.+.+
T Consensus 296 ~~~T~~gnpla~AAala~Le~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~-~~~v~~~----------ggm~~i~~ 361 (427)
T d2gsaa_ 296 QAGTLSGNPLAMTAGIKTLELLRQP---GTYEYLDQITKRLSDGLLAIAQETGH-AACGGQV----------SGMFGFFF 361 (427)
T ss_dssp CCCTTTTCHHHHHHHHHHHHHHTST---THHHHHHHHHHHHHHHHHHHHHHTTC-CCEEEEE----------TTEEEEES
T ss_pred CCCCCCCCchhhHHHHHhhHHhhhh---hHHhhhhHHHHHHHHHHHHHHhhcCC-CcEEccc----------CCeEEEEE
Confidence 112 34556677777788887663 45677777777777777554210000 1112111 34555544
Q ss_pred eCCCCC------ccCH---HHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceE
Q 010538 405 KRPDGS------WFGY---REVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAI 475 (508)
Q Consensus 405 ~~~~~~------~~~~---~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i 475 (508)
...+.. ..+. ..+.+.+.++||.++++. ...+
T Consensus 362 ~~~~v~~~~~~~~~d~~~~~~~~~~ll~~Gv~l~p~~---------------------------------------~~~~ 402 (427)
T d2gsaa_ 362 TEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQ---------------------------------------FEAG 402 (427)
T ss_dssp SSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSST---------------------------------------TSCE
T ss_pred eccCCCCHHHhhcccHHHHHHHHHHHHHCCEEECCCC---------------------------------------Ccce
Confidence 221110 0011 235556778999987642 1112
Q ss_pred EEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 476 RVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 476 Ris~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
-+..-+|++|||++++++++.++.
T Consensus 403 --~~~l~~Te~dId~~l~al~~al~~ 426 (427)
T d2gsaa_ 403 --FTSLAHTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp --ECCTTCCHHHHHHHHHHHHHHHTC
T ss_pred --eCCCCCCHHHHHHHHHHHHHHHHh
Confidence 244557999999999999987753
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.21 E-value=4.4e-10 Score=114.79 Aligned_cols=362 Identities=10% Similarity=0.034 Sum_probs=194.3
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+ .|--+|.+++++.+++.. . ........ .....++-+++.+...-..+ .+.|++++
T Consensus 39 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~-~-~~~~~~~~-----~~~~~~la~~L~~~~~~~~~--~v~f~~sG 109 (431)
T d1zoda1 39 DGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGK-L-DHLFSEML-----SRPVVDLATRLANITPPGLD--RALLLSTG 109 (431)
T ss_dssp TCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHH-C-CCCCTTCC-----CHHHHHHHHHHHHHSCTTCC--EEEEESCH
T ss_pred CCCEEEEcccCHHhhhhcCCCHHHHHHHHHHHhh-c-cccccccc-----cHHHHHHHHHHHHhCCcccc--eeeecccc
Confidence 7788999843 344478898887665532 1 11111111 11223445556677654455 89999999
Q ss_pred HHHHHHHHhhcC-CCCCCeEEEecccccch-HHHHHHHHh-----c---CCeEEEEccCCccCccccccccccccccccc
Q 010538 113 TAALKLVGEAFP-WSHQSSYMYTMENHNSV-LGIREYALS-----Q---GAAAFAIDVEEAVDNDGLSESLVTSTKISLL 182 (508)
Q Consensus 113 t~al~~~~~~l~-~~~g~~vl~~~~~h~s~-~~~~~~~~~-----~---G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d 182 (508)
|+|+..++.... ..+...|+.....|-+. ......... . ......++.......... + ........+
T Consensus 110 seA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~ 186 (431)
T d1zoda1 110 AESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFE-R--NGAYDYLAE 186 (431)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCE-E--TTEECHHHH
T ss_pred cchHHHHHHHHHHhcCCcceeecccccccccchhhcccccccccccCCcccCceeeeeecccccccc-c--ccchhhhhh
Confidence 999998776542 23456666665444433 322211100 0 011222222110000000 0 000000001
Q ss_pred hhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEeccccC-CCC
Q 010538 183 PIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC-VTQ 257 (508)
Q Consensus 183 ~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~-g~~ 257 (508)
.+.+. ..+. ....+++..|++.-+....|.+.| ++.+.++|++ +|+++|.|++++. |..
T Consensus 187 ~~~~~--~~~~--~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~------------~gillI~DEV~tG~gRt 250 (431)
T d1zoda1 187 LDYAF--DLID--RQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEA------------RGMLLILDEAQTGVGRT 250 (431)
T ss_dssp HHHHH--HHHH--HHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHH------------HTCEEEEECTTTTTTTT
T ss_pred HHHHH--HHHH--HhccccccceeeccccccCCccCCCHHHHHHHHHHHHh------------cCceEEecccccccccc
Confidence 11111 0000 112356788888888887888877 6777777776 9999999999984 433
Q ss_pred CCCCC----CCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCCh
Q 010538 258 PPDLS----KYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASF 333 (508)
Q Consensus 258 ~~d~~----~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~ 333 (508)
-.-+. ....|+++.+ |.+++-.-++.++++++............ ....+.+.
T Consensus 251 G~~~~~~~~gv~PDi~~~g--K~l~gG~p~~av~~~~~~~~~~~~~~~~~----------------------~~T~~g~p 306 (431)
T d1zoda1 251 GTMFACQRDGVTPDILTLS--KTLGAGLPLAAIVTSAAIEERAHELGYLF----------------------YTTHVSDP 306 (431)
T ss_dssp SSSSTHHHHTCCCSEEEEC--HHHHTTSSCEEEEECHHHHHHHHHTTCCC----------------------CCTTTTCH
T ss_pred ccccccccCCCCcchhccc--cccccccccceeeeeecchhhhhcccccc----------------------cCCCCCCc
Confidence 22221 1247999998 85442112577777776654332211000 01122345
Q ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceE-EEecCCCCCcccCCCCceEEEEeeCC-CCCc
Q 010538 334 LSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVC-TIYGTYTSEVSYHDTGSMVSFNLKRP-DGSW 411 (508)
Q Consensus 334 ~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 411 (508)
.+.++..++++.+.+. .+.++..++.+++.+.+.++... .+-+ .+.+ .+.+..+.+... ....
T Consensus 307 l~~aaa~a~l~~i~~~---~~~~~~~~~g~~l~~~l~~~~~~--~~~i~~vrG----------~Glm~~ie~~~~~~~~~ 371 (431)
T d1zoda1 307 LPAAVGLRVLDVVQRD---GLVARANVMGDRLRRGLLDLMER--FDCIGDVRG----------RGLLLGVEIVKDRRTKE 371 (431)
T ss_dssp HHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHH--CTTEEEEEE----------ETTEEEEEEEEETTTTE
T ss_pred chHHHHHHHHHHhhhh---hhhHHHHHHHHHHhhhhhhhhhc--CCCeEEEee----------cceEEEEEEecCCcccC
Confidence 5566666778877663 45666666666666665443100 0111 1211 156666665321 1100
Q ss_pred ---cCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHH
Q 010538 412 ---FGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDA 488 (508)
Q Consensus 412 ---~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev 488 (508)
.....+.+.+.++|+....-.. ++ .++.||+++.+-.|++|+
T Consensus 372 ~~~~~~~~i~~~~~~~Gl~~~~~~~--~~---------------------------------~~~~i~l~Ppl~it~~ei 416 (431)
T d1zoda1 372 PADGLGAKITRECMNLGLSMNIVQL--PG---------------------------------MGGVFRIAPPLTVSEDEI 416 (431)
T ss_dssp ECTTHHHHHHHHHHHTTEECCEECC--TT---------------------------------SCCEEEECCCTTCCHHHH
T ss_pred ccHHHHHHHHHHHHHhCcccCeeee--cC---------------------------------CCCEEEEECCCCCCHHHH
Confidence 1124577788888987432110 00 257899999999999999
Q ss_pred HHHHHhhhhhhhhh
Q 010538 489 KVNRCSSFDFVNFS 502 (508)
Q Consensus 489 ~~l~~~~~~~~~~~ 502 (508)
|++++++.+.++.+
T Consensus 417 d~~~~~l~~al~~v 430 (431)
T d1zoda1 417 DLGLSLLGQAIERA 430 (431)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887653
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.20 E-value=1.4e-10 Score=119.46 Aligned_cols=202 Identities=13% Similarity=0.088 Sum_probs=127.7
Q ss_pred CCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEeccccC-CCCC--CCCCCC----CCc
Q 010538 199 GDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC-VTQP--PDLSKY----PVD 267 (508)
Q Consensus 199 ~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~-g~~~--~d~~~~----~~D 267 (508)
.+++..|++..++...|.+.+ ++.|.++|++ +|+++|+|++++. |..- .....+ ..|
T Consensus 246 ~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~------------~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PD 313 (461)
T d1ohwa_ 246 KKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRK------------HGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPAD 313 (461)
T ss_dssp TCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHH------------TTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCS
T ss_pred CCccceeeeccccccccccCchhhHHHHHHHHHHh------------hCcceeccccccccccccccccccccccccCch
Confidence 467889999888888888776 4455555555 9999999999863 3221 111111 368
Q ss_pred EEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH
Q 010538 268 FVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN 347 (508)
Q Consensus 268 ~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~ 347 (508)
+++++ |.++ | |++.....+. ...+...+ ....-+..+.++..++++.+.
T Consensus 314 iv~~g--K~l~---~-g~~~~~~~~~-~~~~~~~~------------------------~T~~g~p~~~aaa~a~l~~i~ 362 (461)
T d1ohwa_ 314 VMTFS--KKMM---T-GGFFHKEEFR-PNAPYRIF------------------------NTWLGDPSKNLLLAEVINIIK 362 (461)
T ss_dssp EEEEC--GGGS---S-EEEEECGGGS-CSSTTSSC------------------------CSCSSCHHHHHHHHHHHHHHH
T ss_pred hhhhh--hccc---c-cccccccccc-cccccccc------------------------cccccccccchhhcccchhhh
Confidence 99777 8666 3 4544443321 11111110 011234456666677888877
Q ss_pred hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceE-EEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCC
Q 010538 348 SLTVPAICRHIASLGMYVRKVLLSLRHENGADVC-TIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGI 426 (508)
Q Consensus 348 ~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI 426 (508)
+ +++.+++.++.++|.+.|+++.... +..+ .+.+ ++.++.+.+++.+ ...++.+.+.++|+
T Consensus 363 ~---~~l~~~~~~~g~~l~~~l~~l~~~~-~~~i~~vrG----------~Gl~~~ie~~~~~----~~~~i~~~~~~~Gl 424 (461)
T d1ohwa_ 363 R---EDLLSNAAHAGKVLLTGLLDLQARY-PQFISRVRG----------RGTFCSFDTPDES----IRNKLISIARNKGV 424 (461)
T ss_dssp H---TTHHHHHHHHHHHHHHHHHHHHHHC-TTTCEEEEE----------ETTEEEEECSSHH----HHHHHHHHHHHTTE
T ss_pred h---hhHHHHHHHHHHHHHHHHHHHHhhC-CCceEEeee----------eeEEEEEEcCCHH----HHHHHHHHHHHCCe
Confidence 6 3566777888888888877652100 0011 1211 2677788876432 12357888889999
Q ss_pred eeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 427 QLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 427 ~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
.+.+. .+..||+.+.+-.|++|++.+++.+.+.+.
T Consensus 425 l~~~~---------------------------------------~~~~ir~~PpL~it~~eid~~~~~l~~~l~ 459 (461)
T d1ohwa_ 425 MLGGC---------------------------------------GDKSIRFRPTLVFRDHHAHLFLNIFSDILA 459 (461)
T ss_dssp ECEEE---------------------------------------TTTEEECCCCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEeeC---------------------------------------CCCEEEEeCCcCCCHHHHHHHHHHHHHHHh
Confidence 98652 146899999999999999999999988764
|