Citrus Sinensis ID: 010544

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------
MADNELPVDQVATMDLNDDAVQRHQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVTCFFKKFQALDWLLYFIFF
cccccccccccccccccccccccccccccEEHHHHHccccccccccccEEEEEEEEEcccccccccEEEEEEEcccccccEEEEEcccccccccccccccEEEEEEEEEcccccccccEEEEEEEEEEEEEccccccccccccccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEccccccccccccccEEEEEEccccHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEcccHHHHHHHHHcccEEEEccccccccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccHHHHHHHHHHHccccccEEHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHcccccEEEEccccccccccccccccccEEEEEccccccccEEccccccHHHHHHHHcc
cccccccHHHHHHHcccccccccccHcccEEHHHHHccccccccccccEEEEEEEEEEEEccccccEEEEEEcccccccccEEEEccccccHHHHccccEEEEEEEEEEEcccccccEEEEEEEEEEEEEcccccccccHcccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccEEEcccccccccEEEEEEcccccccccHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHcccccEEEEccccccccccHccHHHHcccccEEEEccHHHHHHHHHHHHcEEEEEEEEccccccccccccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcHHHHHHHHHHHcccccEEcHHHHHHHHHHHcccccEEEccEEEcEcccHHHHHHHHHHHccccEEEEcccHHHHEEEEEEcccccEHHHHHEEcccccEEEccHHHHHHHHHHHcc
madnelpvdqvatmdlnddavqrhqfsDRVLIKSIltrpdggaglagrqvrvggwvktgreqgkgSFAFLevndgscpanlqvivdkdvadlgqlvptgtcvyvegmlknppegtkqKIELRVQKVVDvgmvdpakypipktklTLEFLrdripfrprtnTIAAVARIRNALAYATHTflqkqgflyihtpiittsdcegagemFQVTTLISDADKLEKeliknpppseadIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLeersklkpgipqkdgkidytQDFFARQAFLTVSGQLQVETYACAVsnvytfgptfraehshtsrhlaefwmvepemafsdlkdDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLrmvastpferITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLtevkfqkpvivynyPKGIKAFYMRLNDDLKTVAAMDVLVPKVTCFFKKFQALDWLLYFIFF
MADNELPVDQVATMDLNDDAVQRHQFSDRVLIKSIltrpdggaglagrqVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMlknppegtkqkiELRVQKVVDvgmvdpakypipktkltleflrdripfrprtNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELiknpppseadIEAAKLVIKEKGEAVaklksdkagreaisASVTELTKAKenlakleersklkpgipqkdGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLtevkfqkpvivYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVTCFFKKFQALDWLLYFIFF
MADNELPVDQVATMDLNDDAVQRHQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTeavellevavKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVTCFFKKFQALDWLLYFIFF
**********************RHQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKN*****KQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISD******************************************************************************KIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMV**************CAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVTCFFKKFQALDWLLYFIF*
*****************************VLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKN*********ELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVI***********************VTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVTCFFKKFQALDWLLYFIFF
MADNELPVDQVATMDLNDDAVQRHQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGE***************SASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVTCFFKKFQALDWLLYFIFF
**********************RHQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEK**IKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVTCFFKKFQALDWLLYFIFF
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MADNELPVDQVATMDLNDDAVQRHQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAxxxxxxxxxxxxxxxxxxxxxSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVTCFFKKFQALDWLLYFIFF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query507 2.2.26 [Sep-21-2011]
Q9SW96572 Asparagine--tRNA ligase, yes no 0.962 0.853 0.718 0.0
Q9SSK1571 Asparagine--tRNA ligase, no no 0.944 0.838 0.717 0.0
Q9SW95638 Asparagine--tRNA ligase, no no 0.838 0.666 0.449 1e-102
O48593567 Asparagine--tRNA ligase, no no 0.783 0.700 0.428 4e-98
B3H198467 Asparagine--tRNA ligase O yes no 0.731 0.794 0.435 5e-90
A3N039467 Asparagine--tRNA ligase O yes no 0.731 0.794 0.435 5e-90
Q7VLL7467 Asparagine--tRNA ligase O yes no 0.733 0.796 0.427 8e-89
Q7N622466 Asparagine--tRNA ligase O yes no 0.719 0.783 0.421 3e-87
B8F3Y5467 Asparagine--tRNA ligase O yes no 0.731 0.794 0.426 2e-86
Q6D453466 Asparagine--tRNA ligase O yes no 0.719 0.783 0.414 4e-85
>sp|Q9SW96|SYNC1_ARATH Asparagine--tRNA ligase, cytoplasmic 1 OS=Arabidopsis thaliana GN=SYNC1 PE=2 SV=1 Back     alignment and function desciption
 Score =  751 bits (1938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/493 (71%), Positives = 426/493 (86%), Gaps = 5/493 (1%)

Query: 1   MADNELP-VDQVATMDLNDDA--VQRHQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVK 57
           MAD  +P   Q+A + L +D   VQR QFS+RVLI++IL RPDGGAGLAG+ VR+GGWVK
Sbjct: 1   MADEIVPPATQLAAVSLENDGSTVQRAQFSNRVLIRTILDRPDGGAGLAGQTVRIGGWVK 60

Query: 58  TGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEG--T 115
           +GR+QGK +F+FL VNDGSCPANLQV+VD  + D+  LV TGTCV V+G+LK PP+G  T
Sbjct: 61  SGRDQGKRTFSFLAVNDGSCPANLQVMVDPSLYDVSNLVATGTCVTVDGVLKVPPKGKGT 120

Query: 116 KQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYA 175
           +Q+IEL V KV+DVG VD +KYP+PKTKLTLE LRD +  R RTN+I+AVARIRNALA+A
Sbjct: 121 QQQIELNVVKVIDVGTVDASKYPLPKTKLTLETLRDVLHLRSRTNSISAVARIRNALAFA 180

Query: 176 THTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAA 235
           TH+F Q+  FLYIHTPIITTSDCEGAGEMFQ TTLI+  ++LE++LI NPPP+EAD+EAA
Sbjct: 181 THSFFQEHSFLYIHTPIITTSDCEGAGEMFQATTLINYTERLEQDLIDNPPPTEADVEAA 240

Query: 236 KLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDY 295
           +L++ E+G  VA+LK+ KA +EAI+A+V EL  AKE  A ++ERS+L+PG+P+KDG IDY
Sbjct: 241 RLIVIERGNVVAELKAAKASKEAITAAVAELKIAKETFAHIDERSRLRPGLPKKDGNIDY 300

Query: 296 TQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS 355
           ++DFF RQAFLTVSGQLQVETYACA+SNVYTFGPTFRAE+SHTSRHLAEFWMVEPE+AF+
Sbjct: 301 SKDFFGRQAFLTVSGQLQVETYACALSNVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFA 360

Query: 356 DLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAV 415
           DL+DDMNCAEAYVK+MC+WLL+ C+ DME MAKN+D  CI+RL++VASTPF RITYT+A+
Sbjct: 361 DLEDDMNCAEAYVKYMCNWLLEKCYADMELMAKNFDSGCIDRLKLVASTPFGRITYTKAI 420

Query: 416 ELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDL 475
           ELLE AV +GK F+N VEWGIDLASEHERYLTEV FQKP+IVYNYPKGIKAFYMRLNDD 
Sbjct: 421 ELLEEAVAKGKEFDNNVEWGIDLASEHERYLTEVLFQKPLIVYNYPKGIKAFYMRLNDDE 480

Query: 476 KTVAAMDVLVPKV 488
           KTVAAMDVLVPKV
Sbjct: 481 KTVAAMDVLVPKV 493
Potentially protective antigen in lymphatic filariasis.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 2
>sp|Q9SSK1|SYNC3_ARATH Asparagine--tRNA ligase, cytoplasmic 3 OS=Arabidopsis thaliana GN=SYNC3 PE=3 SV=1 Back     alignment and function description
>sp|Q9SW95|SYNC2_ARATH Asparagine--tRNA ligase, cytoplasmic 2 OS=Arabidopsis thaliana GN=SYNC2 PE=2 SV=2 Back     alignment and function description
>sp|O48593|SYNO_ARATH Asparagine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SYNO PE=2 SV=3 Back     alignment and function description
>sp|B3H198|SYN_ACTP7 Asparagine--tRNA ligase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=asnS PE=3 SV=1 Back     alignment and function description
>sp|A3N039|SYN_ACTP2 Asparagine--tRNA ligase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=asnS PE=3 SV=1 Back     alignment and function description
>sp|Q7VLL7|SYN_HAEDU Asparagine--tRNA ligase OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724) GN=asnS PE=3 SV=1 Back     alignment and function description
>sp|Q7N622|SYN_PHOLL Asparagine--tRNA ligase OS=Photorhabdus luminescens subsp. laumondii (strain TT01) GN=asnS PE=3 SV=1 Back     alignment and function description
>sp|B8F3Y5|SYN_HAEPS Asparagine--tRNA ligase OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=asnS PE=3 SV=1 Back     alignment and function description
>sp|Q6D453|SYN_ERWCT Asparagine--tRNA ligase OS=Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=asnS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query507
359484512571 PREDICTED: asparaginyl-tRNA synthetase, 0.962 0.854 0.823 0.0
224122518568 predicted protein [Populus trichocarpa] 0.950 0.848 0.790 0.0
449435754572 PREDICTED: asparagine--tRNA ligase, cyto 0.950 0.842 0.765 0.0
356513201567 PREDICTED: asparaginyl-tRNA synthetase, 0.958 0.857 0.748 0.0
357520761551 Asparaginyl-tRNA synthetase [Medicago tr 0.927 0.852 0.765 0.0
356523733567 PREDICTED: asparaginyl-tRNA synthetase, 0.958 0.857 0.742 0.0
388490616551 unknown [Medicago truncatula] 0.927 0.852 0.761 0.0
297793179572 EMB2755 [Arabidopsis lyrata subsp. lyrat 0.950 0.842 0.744 0.0
15241897572 asparaginyl-tRNA synthetase, cytoplasmic 0.962 0.853 0.718 0.0
15223302571 asparaginyl-tRNA synthetase, cytoplasmic 0.944 0.838 0.717 0.0
>gi|359484512|ref|XP_003633115.1| PREDICTED: asparaginyl-tRNA synthetase, cytoplasmic 1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  841 bits (2173), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/492 (82%), Positives = 451/492 (91%), Gaps = 4/492 (0%)

Query: 1   MADNELP-VDQVATMDLNDDAVQ---RHQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWV 56
           MA++ +P VDQ+A   LNDD      + QFSDR LI++IL+RPDGGAGLAG+ V+VGGWV
Sbjct: 1   MAEDSVPPVDQMALATLNDDVSTPFVKAQFSDRHLIRTILSRPDGGAGLAGQTVKVGGWV 60

Query: 57  KTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTK 116
           KTGREQGKGSFAFLE+NDGSCPANLQVIVD  VA LGQLV TGTCV+VEG+LK PPEGTK
Sbjct: 61  KTGREQGKGSFAFLELNDGSCPANLQVIVDAAVAPLGQLVQTGTCVHVEGLLKVPPEGTK 120

Query: 117 QKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYAT 176
           Q++ELRV+KV  VG VDPAKYP+PKT+LTLEFLRD + FRPRTNTI+AVARIRNALAYAT
Sbjct: 121 QRVELRVEKVHHVGPVDPAKYPLPKTRLTLEFLRDFVHFRPRTNTISAVARIRNALAYAT 180

Query: 177 HTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAK 236
           HTF Q  GFLYIHTPIITTSDCEGAGEMFQVTTLISDA+K+EKELIKNPPPSEADIEAAK
Sbjct: 181 HTFFQNHGFLYIHTPIITTSDCEGAGEMFQVTTLISDAEKVEKELIKNPPPSEADIEAAK 240

Query: 237 LVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYT 296
            ++KEKGEAVA+LKS KA +  I+ASV EL KAKENL++LEERSKLKPGIPQKDGKIDY+
Sbjct: 241 ALVKEKGEAVAQLKSAKASKGEITASVAELNKAKENLSRLEERSKLKPGIPQKDGKIDYS 300

Query: 297 QDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD 356
           QDFFARQAFLTVSGQLQVETYACAVS+VYTFGPTFRAEHSHTSRHLAEFWMVEPE+AF+D
Sbjct: 301 QDFFARQAFLTVSGQLQVETYACAVSSVYTFGPTFRAEHSHTSRHLAEFWMVEPEIAFAD 360

Query: 357 LKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVE 416
           LKDDMNCAEAYVKF+C WLLD+C DDMEFMAKN+DK CI+RLRMVASTPFERI+YTEA++
Sbjct: 361 LKDDMNCAEAYVKFLCQWLLDNCIDDMEFMAKNFDKGCIDRLRMVASTPFERISYTEAIK 420

Query: 417 LLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLK 476
           LLE AVK+ K FENKVEWGIDLASEHER+LTEV F+KPVIV++YPKGIKAFYMRLNDD+K
Sbjct: 421 LLEEAVKKDKKFENKVEWGIDLASEHERFLTEVLFKKPVIVHDYPKGIKAFYMRLNDDMK 480

Query: 477 TVAAMDVLVPKV 488
           TVAAMDVLVPKV
Sbjct: 481 TVAAMDVLVPKV 492

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224122518|ref|XP_002330501.1| predicted protein [Populus trichocarpa] gi|222872435|gb|EEF09566.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449435754|ref|XP_004135659.1| PREDICTED: asparagine--tRNA ligase, cytoplasmic 1-like [Cucumis sativus] gi|449485808|ref|XP_004157279.1| PREDICTED: asparagine--tRNA ligase, cytoplasmic 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356513201|ref|XP_003525302.1| PREDICTED: asparaginyl-tRNA synthetase, cytoplasmic 1-like [Glycine max] Back     alignment and taxonomy information
>gi|357520761|ref|XP_003630669.1| Asparaginyl-tRNA synthetase [Medicago truncatula] gi|355524691|gb|AET05145.1| Asparaginyl-tRNA synthetase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356523733|ref|XP_003530489.1| PREDICTED: asparaginyl-tRNA synthetase, cytoplasmic 1-like [Glycine max] Back     alignment and taxonomy information
>gi|388490616|gb|AFK33374.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|297793179|ref|XP_002864474.1| EMB2755 [Arabidopsis lyrata subsp. lyrata] gi|297310309|gb|EFH40733.1| EMB2755 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15241897|ref|NP_200479.1| asparaginyl-tRNA synthetase, cytoplasmic 1 [Arabidopsis thaliana] gi|20140329|sp|Q9SW96.1|SYNC1_ARATH RecName: Full=Asparagine--tRNA ligase, cytoplasmic 1; AltName: Full=Asparaginyl-tRNA synthetase 1; Short=AsnRS 1; AltName: Full=Protein EMBRYO DEFECTIVE 2755 gi|5670315|gb|AAD46681.1|AF170909_1 SYNC1 protein [Arabidopsis thaliana] gi|10176772|dbj|BAB09886.1| SYNC1 protein [Arabidopsis thaliana] gi|133778862|gb|ABO38771.1| At5g56680 [Arabidopsis thaliana] gi|332009412|gb|AED96795.1| asparaginyl-tRNA synthetase, cytoplasmic 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15223302|ref|NP_177254.1| asparaginyl-tRNA synthetase, cytoplasmic 3 [Arabidopsis thaliana] gi|20140327|sp|Q9SSK1.1|SYNC3_ARATH RecName: Full=Asparagine--tRNA ligase, cytoplasmic 3; AltName: Full=Asparaginyl-tRNA synthetase 3; Short=AsnRS 3 gi|5902407|gb|AAD55509.1|AC008148_19 Similar to asparaginyl-tRNA synthetases [Arabidopsis thaliana] gi|332197025|gb|AEE35146.1| asparaginyl-tRNA synthetase, cytoplasmic 3 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query507
TAIR|locus:2165001572 SYNC1 [Arabidopsis thaliana (t 0.962 0.853 0.703 1.1e-188
TAIR|locus:2014005571 SYNC3 [Arabidopsis thaliana (t 0.944 0.838 0.702 7.6e-183
TAIR|locus:2079646638 NS2 "asparaginyl-tRNA syntheta 0.816 0.648 0.450 4.6e-103
TAIR|locus:2130804567 NS1 [Arabidopsis thaliana (tax 0.394 0.352 0.585 1.1e-101
TIGR_CMR|GSU_1156461 GSU_1156 "asparaginyl-tRNA syn 0.424 0.466 0.515 3e-95
TIGR_CMR|SO_2218466 SO_2218 "asparaginyl-tRNA synt 0.394 0.429 0.573 1.3e-90
TIGR_CMR|CPS_2591466 CPS_2591 "asparaginyl-tRNA syn 0.394 0.429 0.563 2.1e-90
UNIPROTKB|P0A8M0466 asnS "asparaginyl-tRNA synthet 0.394 0.429 0.553 7.1e-90
TIGR_CMR|BA_4802463 BA_4802 "asparaginyl-tRNA synt 0.394 0.431 0.529 1.9e-87
UNIPROTKB|Q9KSF9466 asnS "Asparagine--tRNA ligase" 0.394 0.429 0.563 3.9e-87
TAIR|locus:2165001 SYNC1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1829 (648.9 bits), Expect = 1.1e-188, P = 1.1e-188
 Identities = 347/493 (70%), Positives = 417/493 (84%)

Query:     1 MADNELP-VDQVATMDLNDDA--VQRHQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVK 57
             MAD  +P   Q+A + L +D   VQR QFS+RVLI++IL RPDGGAGLAG+ VR+GGWVK
Sbjct:     1 MADEIVPPATQLAAVSLENDGSTVQRAQFSNRVLIRTILDRPDGGAGLAGQTVRIGGWVK 60

Query:    58 TGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEG--T 115
             +GR+QGK +F+FL VNDGSCPANLQV+VD  + D+  LV TGTCV V+G+LK PP+G  T
Sbjct:    61 SGRDQGKRTFSFLAVNDGSCPANLQVMVDPSLYDVSNLVATGTCVTVDGVLKVPPKGKGT 120

Query:   116 KQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYA 175
             +Q+IEL V KV+DVG VD +KYP+PKTKLTLE LRD +  R RTN+I+AVARIRNALA+A
Sbjct:   121 QQQIELNVVKVIDVGTVDASKYPLPKTKLTLETLRDVLHLRSRTNSISAVARIRNALAFA 180

Query:   176 THTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAA 235
             TH+F Q+  FLYIHTPIITTSDCEGAGEMFQ TTLI+  ++LE++LI NPPP+EAD+EAA
Sbjct:   181 THSFFQEHSFLYIHTPIITTSDCEGAGEMFQATTLINYTERLEQDLIDNPPPTEADVEAA 240

Query:   236 KLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDY 295
             +L++ E+G  VA+LK+ KA +EAI+A+V EL  AKE  A ++ERS+L+PG+P+KDG IDY
Sbjct:   241 RLIVIERGNVVAELKAAKASKEAITAAVAELKIAKETFAHIDERSRLRPGLPKKDGNIDY 300

Query:   296 TQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS 355
             ++DFF RQAFLTVSGQLQVETYACA+SNVYTFGPTFRAE+SHTSRHLAEFWMVEPE+AF+
Sbjct:   301 SKDFFGRQAFLTVSGQLQVETYACALSNVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFA 360

Query:   356 DLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXX 415
             DL+DDMNCAEAYVK+MC+WLL+ C+ DME MAKN+D  CI+RL++VASTPF RITYT   
Sbjct:   361 DLEDDMNCAEAYVKYMCNWLLEKCYADMELMAKNFDSGCIDRLKLVASTPFGRITYTKAI 420

Query:   416 XXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDL 475
                     +GK F+N VEWGIDLASEHERYLTEV FQKP+IVYNYPKGIKAFYMRLNDD 
Sbjct:   421 ELLEEAVAKGKEFDNNVEWGIDLASEHERYLTEVLFQKPLIVYNYPKGIKAFYMRLNDDE 480

Query:   476 KTVAAMDVLVPKV 488
             KTVAAMDVLVPKV
Sbjct:   481 KTVAAMDVLVPKV 493
GO:0000166 "nucleotide binding" evidence=IEA
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA
GO:0004816 "asparagine-tRNA ligase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA
GO:0006421 "asparaginyl-tRNA aminoacylation" evidence=IEA
GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS
GO:0005739 "mitochondrion" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2014005 SYNC3 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079646 NS2 "asparaginyl-tRNA synthetase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130804 NS1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1156 GSU_1156 "asparaginyl-tRNA synthetase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|SO_2218 SO_2218 "asparaginyl-tRNA synthetase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_2591 CPS_2591 "asparaginyl-tRNA synthetase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|P0A8M0 asnS "asparaginyl-tRNA synthetase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4802 BA_4802 "asparaginyl-tRNA synthetase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KSF9 asnS "Asparagine--tRNA ligase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SSK1SYNC3_ARATH6, ., 1, ., 1, ., 2, 20.71720.94470.8388nono
Q9SW96SYNC1_ARATH6, ., 1, ., 1, ., 2, 20.71800.96250.8531yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.220.991
3rd Layer6.1.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_1450168
asparaginyl-tRNA synthetase (EC-6.1.1.22) (568 aa)
(Populus trichocarpa)
Predicted Functional Partners:
fgenesh4_pg.C_LG_VIII001519
glutamyl-tRNA(Gln) amidotransferase (EC-6.3.5.7) (506 aa)
     •  0.899
eugene3.00180130
hypothetical protein (141 aa)
     •  0.899
estExt_fgenesh4_pm.C_LG_X0145
glutamyl-tRNA(Gln) amidotransferase (529 aa)
     •  0.899
gw1.XI.1444.1
aminoacyl-tRNA ligase (EC-6.1.1.4) (889 aa)
•     • 0.467

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query507
PLN02221572 PLN02221, PLN02221, asparaginyl-tRNA synthetase 0.0
PLN02532633 PLN02532, PLN02532, asparagine-tRNA synthetase 1e-171
PTZ00425586 PTZ00425, PTZ00425, asparagine-tRNA ligase; Provis 1e-135
PRK03932450 PRK03932, asnC, asparaginyl-tRNA synthetase; Valid 1e-120
TIGR00457453 TIGR00457, asnS, asparaginyl-tRNA synthetase 5e-92
PLN02603565 PLN02603, PLN02603, asparaginyl-tRNA synthetase 4e-87
cd00776322 cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/As 1e-75
COG0017435 COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetas 9e-75
PRK03932450 PRK03932, asnC, asparaginyl-tRNA synthetase; Valid 9e-65
PLN02603565 PLN02603, PLN02603, asparaginyl-tRNA synthetase 2e-56
TIGR00457453 TIGR00457, asnS, asparaginyl-tRNA synthetase 1e-50
COG0017435 COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetas 4e-41
pfam00152345 pfam00152, tRNA-synt_2, tRNA synthetases class II 2e-32
cd0431882 cd04318, EcAsnRS_like_N, EcAsnRS_like_N: N-termina 2e-26
PRK05159437 PRK05159, aspC, aspartyl-tRNA synthetase; Provisio 5e-26
PRK06462335 PRK06462, PRK06462, asparagine synthetase A; Revie 1e-23
TIGR00458428 TIGR00458, aspS_nondisc, nondiscriminating asparty 1e-19
cd00776322 cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/As 5e-16
PLN02850530 PLN02850, PLN02850, aspartate-tRNA ligase 2e-11
cd0410085 cd04100, Asp_Lys_Asn_RS_N, Asp_Lys_Asn_RS_N: N-ter 2e-11
PRK05159437 PRK05159, aspC, aspartyl-tRNA synthetase; Provisio 7e-11
cd00669269 cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA syn 2e-09
pfam0133675 pfam01336, tRNA_anti, OB-fold nucleic acid binding 2e-08
PLN02532 633 PLN02532, PLN02532, asparagine-tRNA synthetase 3e-08
pfam00152345 pfam00152, tRNA-synt_2, tRNA synthetases class II 1e-07
COG1190502 COG1190, LysU, Lysyl-tRNA synthetase (class II) [T 1e-07
TIGR00458428 TIGR00458, aspS_nondisc, nondiscriminating asparty 2e-07
smart0099156 smart00991, WHEP-TRS, A conserved domain of 46 ami 6e-06
TIGR00499496 TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukar 7e-06
cd0432384 cd04323, AsnRS_cyto_like_N, AsnRS_cyto_like_N: N-t 1e-05
COG0173 585 COG0173, AspS, Aspartyl-tRNA synthetase [Translati 3e-05
PLN02850530 PLN02850, PLN02850, aspartate-tRNA ligase 6e-05
PRK00476 588 PRK00476, aspS, aspartyl-tRNA synthetase; Validate 7e-05
PTZ00401550 PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Prov 1e-04
PTZ00401550 PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Prov 2e-04
cd00775329 cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) c 2e-04
PLN02903 652 PLN02903, PLN02903, aminoacyl-tRNA ligase 3e-04
PRK00484491 PRK00484, lysS, lysyl-tRNA synthetase; Reviewed 3e-04
TIGR00459 583 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, ba 8e-04
cd04319103 cd04319, PhAsnRS_like_N, PhAsnRS_like_N: N-termina 8e-04
PRK12820 706 PRK12820, PRK12820, bifunctional aspartyl-tRNA syn 0.002
pfam0045856 pfam00458, WHEP-TRS, WHEP-TRS domain 0.002
cd0120042 cd01200, WHEPGMRS_RNA, EPRS-like_RNA binding domai 0.003
cd00777280 cd00777, AspRS_core, Asp tRNA synthetase (aspRS) c 0.003
>gnl|CDD|177867 PLN02221, PLN02221, asparaginyl-tRNA synthetase Back     alignment and domain information 
 Score =  859 bits (2221), Expect = 0.0
 Identities = 377/493 (76%), Positives = 436/493 (88%), Gaps = 5/493 (1%)

Query: 1   MADNELP-VDQVATMDLNDDA--VQRHQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVK 57
           M D  +P  +Q+A + L +D   VQ+ QFSDRVLI+SIL RPDGGAGLAG++VR+GGWVK
Sbjct: 1   MGDEIVPPANQLAAVSLENDGSTVQKAQFSDRVLIRSILDRPDGGAGLAGQKVRIGGWVK 60

Query: 58  TGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPE--GT 115
           TGREQGKG+FAFLEVNDGSCPANLQV+VD  + DL  LV TGTCV V+G+LK PPE  GT
Sbjct: 61  TGREQGKGTFAFLEVNDGSCPANLQVMVDSSLYDLSTLVATGTCVTVDGVLKVPPEGKGT 120

Query: 116 KQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYA 175
           KQKIEL V+KV+DVG VDP KYP+PKTKLTLEFLRD +  R RTN+I+AVARIRNALA+A
Sbjct: 121 KQKIELSVEKVIDVGTVDPTKYPLPKTKLTLEFLRDVLHLRSRTNSISAVARIRNALAFA 180

Query: 176 THTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAA 235
           TH+F Q+  FLYIHTPIITTSDCEGAGEMFQVTTLI+  ++LE++LI NPPP+EAD+EAA
Sbjct: 181 THSFFQEHSFLYIHTPIITTSDCEGAGEMFQVTTLINYTERLEQDLIDNPPPTEADVEAA 240

Query: 236 KLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDY 295
           +L++KE+GE VA+LK+ KA +E I+A+V EL  AKE+LA +EERSKLKPG+P+KDGKIDY
Sbjct: 241 RLIVKERGEVVAQLKAAKASKEEITAAVAELKIAKESLAHIEERSKLKPGLPKKDGKIDY 300

Query: 296 TQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS 355
           ++DFF RQAFLTVSGQLQVETYACA+S+VYTFGPTFRAE+SHTSRHLAEFWMVEPE+AF+
Sbjct: 301 SKDFFGRQAFLTVSGQLQVETYACALSSVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFA 360

Query: 356 DLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAV 415
           DL+DDMNCAEAYVK+MC WLLD CFDDME MAKN+D  CI+RLRMVASTPF RITYTEA+
Sbjct: 361 DLEDDMNCAEAYVKYMCKWLLDKCFDDMELMAKNFDSGCIDRLRMVASTPFGRITYTEAI 420

Query: 416 ELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDL 475
           ELLE AV +GK F+N VEWGIDLASEHERYLTEV FQKP+IVYNYPKGIKAFYMRLNDD 
Sbjct: 421 ELLEEAVAKGKEFDNNVEWGIDLASEHERYLTEVLFQKPLIVYNYPKGIKAFYMRLNDDE 480

Query: 476 KTVAAMDVLVPKV 488
           KTVAAMDVLVPKV
Sbjct: 481 KTVAAMDVLVPKV 493

Length = 572
>gnl|CDD|215291 PLN02532, PLN02532, asparagine-tRNA synthetase Back     alignment and domain information
>gnl|CDD|240414 PTZ00425, PTZ00425, asparagine-tRNA ligase; Provisional Back     alignment and domain information
>gnl|CDD|235176 PRK03932, asnC, asparaginyl-tRNA synthetase; Validated Back     alignment and domain information
>gnl|CDD|232982 TIGR00457, asnS, asparaginyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|178213 PLN02603, PLN02603, asparaginyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|238399 cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/AsnRS) class II core domain Back     alignment and domain information
>gnl|CDD|223096 COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|235176 PRK03932, asnC, asparaginyl-tRNA synthetase; Validated Back     alignment and domain information
>gnl|CDD|178213 PLN02603, PLN02603, asparaginyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|232982 TIGR00457, asnS, asparaginyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|223096 COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|215753 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N) Back     alignment and domain information
>gnl|CDD|239813 cd04318, EcAsnRS_like_N, EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS Back     alignment and domain information
>gnl|CDD|235354 PRK05159, aspC, aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|235808 PRK06462, PRK06462, asparagine synthetase A; Reviewed Back     alignment and domain information
>gnl|CDD|129550 TIGR00458, aspS_nondisc, nondiscriminating aspartyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|238399 cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/AsnRS) class II core domain Back     alignment and domain information
>gnl|CDD|215456 PLN02850, PLN02850, aspartate-tRNA ligase Back     alignment and domain information
>gnl|CDD|239766 cd04100, Asp_Lys_Asn_RS_N, Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs) Back     alignment and domain information
>gnl|CDD|235354 PRK05159, aspC, aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|238358 cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA synthetase class II core domain Back     alignment and domain information
>gnl|CDD|216440 pfam01336, tRNA_anti, OB-fold nucleic acid binding domain Back     alignment and domain information
>gnl|CDD|215291 PLN02532, PLN02532, asparagine-tRNA synthetase Back     alignment and domain information
>gnl|CDD|215753 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N) Back     alignment and domain information
>gnl|CDD|224111 COG1190, LysU, Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|129550 TIGR00458, aspS_nondisc, nondiscriminating aspartyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|214960 smart00991, WHEP-TRS, A conserved domain of 46 amino acids, called WHEP-TRS has been shown Back     alignment and domain information
>gnl|CDD|232998 TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial Back     alignment and domain information
>gnl|CDD|239818 cd04323, AsnRS_cyto_like_N, AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs Back     alignment and domain information
>gnl|CDD|223251 COG0173, AspS, Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|215456 PLN02850, PLN02850, aspartate-tRNA ligase Back     alignment and domain information
>gnl|CDD|234775 PRK00476, aspS, aspartyl-tRNA synthetase; Validated Back     alignment and domain information
>gnl|CDD|173592 PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|173592 PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|238398 cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) class II core domain Back     alignment and domain information
>gnl|CDD|215490 PLN02903, PLN02903, aminoacyl-tRNA ligase Back     alignment and domain information
>gnl|CDD|234778 PRK00484, lysS, lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|211576 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type Back     alignment and domain information
>gnl|CDD|239814 cd04319, PhAsnRS_like_N, PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS) Back     alignment and domain information
>gnl|CDD|105955 PRK12820, PRK12820, bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional Back     alignment and domain information
>gnl|CDD|215929 pfam00458, WHEP-TRS, WHEP-TRS domain Back     alignment and domain information
>gnl|CDD|238605 cd01200, WHEPGMRS_RNA, EPRS-like_RNA binding domain Back     alignment and domain information
>gnl|CDD|238400 cd00777, AspRS_core, Asp tRNA synthetase (aspRS) class II core domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 507
PLN02221572 asparaginyl-tRNA synthetase 100.0
PLN02532633 asparagine-tRNA synthetase 100.0
PLN02603565 asparaginyl-tRNA synthetase 100.0
COG0017435 AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl 100.0
PTZ00425586 asparagine-tRNA ligase; Provisional 100.0
KOG0554446 consensus Asparaginyl-tRNA synthetase (mitochondri 100.0
TIGR00457453 asnS asparaginyl-tRNA synthetase. In a multiple se 100.0
PRK03932450 asnC asparaginyl-tRNA synthetase; Validated 100.0
TIGR00458428 aspS_arch aspartyl-tRNA synthetase, archaeal type. 100.0
PRK05159437 aspC aspartyl-tRNA synthetase; Provisional 100.0
PTZ00401550 aspartyl-tRNA synthetase; Provisional 100.0
PLN02850530 aspartate-tRNA ligase 100.0
PRK12445505 lysyl-tRNA synthetase; Reviewed 100.0
TIGR00499496 lysS_bact lysyl-tRNA synthetase, eukaryotic and no 100.0
PRK00484491 lysS lysyl-tRNA synthetase; Reviewed 100.0
PLN02502553 lysyl-tRNA synthetase 100.0
KOG0556533 consensus Aspartyl-tRNA synthetase [Translation, r 100.0
KOG0555545 consensus Asparaginyl-tRNA synthetase [Translation 100.0
PTZ00417585 lysine-tRNA ligase; Provisional 100.0
PTZ00385 659 lysyl-tRNA synthetase; Provisional 100.0
PRK029831094 lysS lysyl-tRNA synthetase; Provisional 100.0
TIGR00459 583 aspS_bact aspartyl-tRNA synthetase, bacterial type 100.0
COG0173 585 AspS Aspartyl-tRNA synthetase [Translation, riboso 100.0
COG1190502 LysU Lysyl-tRNA synthetase (class II) [Translation 100.0
PRK00476 588 aspS aspartyl-tRNA synthetase; Validated 100.0
PRK12820 706 bifunctional aspartyl-tRNA synthetase/aspartyl/glu 100.0
PLN02903 652 aminoacyl-tRNA ligase 100.0
cd00776322 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class 100.0
KOG1885560 consensus Lysyl-tRNA synthetase (class II) [Transl 100.0
PRK06462335 asparagine synthetase A; Reviewed 100.0
PF00152335 tRNA-synt_2: tRNA synthetases class II (D, K and N 100.0
cd00775329 LysRS_core Lys_tRNA synthetase (LysRS) class II co 100.0
KOG2411 628 consensus Aspartyl-tRNA synthetase, mitochondrial 100.0
TIGR00462304 genX lysyl-tRNA synthetase-like protein GenX. Many 100.0
cd00669269 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl 100.0
PRK09350306 poxB regulator PoxA; Provisional 100.0
cd00777280 AspRS_core Asp tRNA synthetase (aspRS) class II co 100.0
COG2269322 Truncated, possibly inactive, lysyl-tRNA synthetas 100.0
cd04317135 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticod 99.78
cd04319103 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticod 99.75
cd04322108 LysRS_N LysRS_N: N-terminal, anticodon recognition 99.73
cd04316108 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, a 99.72
cd04320102 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon r 99.65
cd0431882 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticod 99.61
cd0432186 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, a 99.56
cd0432384 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, a 99.56
cd0410085 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, ant 99.55
PRK09537417 pylS pyrolysyl-tRNA synthetase; Reviewed 98.91
PF0133675 tRNA_anti-codon: OB-fold nucleic acid binding doma 98.87
cd00768211 class_II_aaRS-like_core Class II tRNA amino-acyl s 98.77
TIGR02367453 PylS pyrrolysyl-tRNA synthetase. PylS is the archa 98.49
PF00587173 tRNA-synt_2b: tRNA synthetase class II core domain 98.12
cd00496218 PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe 98.07
PF01409247 tRNA-synt_2d: tRNA synthetases class II core domai 97.96
cd00773261 HisRS-like_core Class II Histidinyl-tRNA synthetas 97.79
cd00778261 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) 97.68
PRK00488339 pheS phenylalanyl-tRNA synthetase subunit alpha; V 97.63
cd00670235 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t 97.63
PTZ00326494 phenylalanyl-tRNA synthetase alpha chain; Provisio 97.62
cd00779255 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla 97.6
TIGR00442397 hisS histidyl-tRNA synthetase. This model finds a 97.56
TIGR00468294 pheS phenylalanyl-tRNA synthetase, alpha subunit. 97.44
PRK00037412 hisS histidyl-tRNA synthetase; Reviewed 97.44
COG0016335 PheS Phenylalanyl-tRNA synthetase alpha subunit [T 97.43
cd00772264 ProRS_core Prolyl-tRNA synthetase (ProRS) class II 97.42
cd00771298 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class 97.42
PLN02853492 Probable phenylalanyl-tRNA synthetase alpha chain 97.42
PRK04172489 pheS phenylalanyl-tRNA synthetase subunit alpha; P 97.41
cd00774254 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik 97.4
PRK09194 565 prolyl-tRNA synthetase; Provisional 97.38
TIGR00409 568 proS_fam_II prolyl-tRNA synthetase, family II. Pro 97.37
TIGR00414418 serS seryl-tRNA synthetase. This model represents 97.36
PRK05431425 seryl-tRNA synthetase; Provisional 97.31
cd00770297 SerRS_core Seryl-tRNA synthetase (SerRS) class II 97.29
PLN02788402 phenylalanine-tRNA synthetase 97.27
CHL00201430 syh histidine-tRNA synthetase; Provisional 97.25
TIGR00408 472 proS_fam_I prolyl-tRNA synthetase, family I. Proly 97.18
PLN02530487 histidine-tRNA ligase 97.16
PRK12293281 hisZ ATP phosphoribosyltransferase regulatory subu 97.16
PRK12292391 hisZ ATP phosphoribosyltransferase regulatory subu 97.13
PRK12305575 thrS threonyl-tRNA synthetase; Reviewed 97.12
TIGR00418563 thrS threonyl-tRNA synthetase. This model represen 97.08
cd0448978 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB fol 97.08
PRK12444639 threonyl-tRNA synthetase; Reviewed 97.06
PRK00413638 thrS threonyl-tRNA synthetase; Reviewed 97.02
COG0124 429 HisS Histidyl-tRNA synthetase [Translation, riboso 96.98
cd0447895 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds cor 96.92
PLN02972763 Histidyl-tRNA synthetase 96.89
PRK08661 477 prolyl-tRNA synthetase; Provisional 96.89
PRK03991 613 threonyl-tRNA synthetase; Validated 96.87
PLN02908686 threonyl-tRNA synthetase 96.87
PRK12325439 prolyl-tRNA synthetase; Provisional 96.86
PF13393311 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI 96.81
PLN02837614 threonine-tRNA ligase 96.8
PRK12420423 histidyl-tRNA synthetase; Provisional 96.79
PRK12421392 ATP phosphoribosyltransferase regulatory subunit; 96.79
TIGR00443314 hisZ_biosyn_reg ATP phosphoribosyltransferase, reg 96.72
PRK14799 545 thrS threonyl-tRNA synthetase; Provisional 96.68
PLN02320502 seryl-tRNA synthetase 96.62
KOG2784483 consensus Phenylalanyl-tRNA synthetase, beta subun 96.58
PRK04173456 glycyl-tRNA synthetase; Provisional 96.58
cd0448392 hOBFC1_like hOBFC1_like: A subfamily of OB folds s 96.51
PF1374299 tRNA_anti_2: OB-fold nucleic acid binding domain 96.26
PRK12295373 hisZ ATP phosphoribosyltransferase regulatory subu 96.07
cd0448773 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB f 96.01
PLN02678448 seryl-tRNA synthetase 95.95
cd0449283 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB fol 95.93
cd0448584 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresp 95.73
TIGR00470 533 sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam 95.71
COG5235258 RFA2 Single-stranded DNA-binding replication prote 95.71
PF04076103 BOF: Bacterial OB fold (BOF) protein; InterPro: IP 95.69
cd0449079 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds 95.67
cd0352475 RPA2_OBF_family RPA2_OBF_family: A family of oligo 95.47
COG1107715 Archaea-specific RecJ-like exonuclease, contains D 95.47
COG0172429 SerS Seryl-tRNA synthetase [Translation, ribosomal 95.37
TIGR00156126 conserved hypothetical protein TIGR00156. As of th 95.29
COG3111128 Periplasmic protein with OB-fold [Function unknown 94.97
cd0448291 RPA2_OBF_like RPA2_OBF_like: A subgroup of unchara 94.82
PRK10053130 hypothetical protein; Provisional 94.81
PF10451256 Stn1: Telomere regulation protein Stn1; InterPro: 94.74
PRK07373449 DNA polymerase III subunit alpha; Reviewed 94.66
COG4085204 Predicted RNA-binding protein, contains TRAM domai 94.53
PRK06461129 single-stranded DNA-binding protein; Reviewed 94.17
PF12869144 tRNA_anti-like: tRNA_anti-like; InterPro: IPR02442 93.4
PRK00960517 seryl-tRNA synthetase; Provisional 93.3
COG0441589 ThrS Threonyl-tRNA synthetase [Translation, riboso 93.3
PRK056721046 dnaE2 error-prone DNA polymerase; Validated 93.27
PRK15491374 replication factor A; Provisional 93.17
PRK12294272 hisZ ATP phosphoribosyltransferase regulatory subu 93.13
PRK14699484 replication factor A; Provisional 92.66
PRK068261151 dnaE DNA polymerase III DnaE; Reviewed 92.43
PRK073741170 dnaE DNA polymerase III subunit alpha; Validated 92.14
cd04474104 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds cor 92.05
PRK13480314 3'-5' exoribonuclease YhaM; Provisional 91.9
PRK069201107 dnaE DNA polymerase III DnaE; Reviewed 91.71
PTZ00213348 asparagine synthetase A; Provisional 91.37
cd0448875 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB f 91.33
PRK056731135 dnaE DNA polymerase III subunit alpha; Validated 91.28
cd04479101 RPA3 RPA3: A subfamily of OB folds similar to huma 91.27
COG0442 500 ProS Prolyl-tRNA synthetase [Translation, ribosoma 91.05
PF03100131 CcmE: CcmE; InterPro: IPR004329 CcmE is the produc 90.75
PF08661109 Rep_fac-A_3: Replication factor A protein 3; Inter 90.57
cd00645309 AsnA Asparagine synthetase (aspartate-ammonia liga 90.3
PRK072791034 dnaE DNA polymerase III DnaE; Reviewed 90.08
PRK15491374 replication factor A; Provisional 89.73
PRK09616552 pheT phenylalanyl-tRNA synthetase subunit beta; Re 89.47
COG1570440 XseA Exonuclease VII, large subunit [DNA replicati 89.14
cd0448482 polC_OBF polC_OBF: A subfamily of OB folds corresp 89.03
TIGR00415520 serS_MJ seryl-tRNA synthetase, Methanococcus janna 88.55
cd0449182 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds simil 88.25
KOG2324457 consensus Prolyl-tRNA synthetase [Translation, rib 88.21
PRK07211485 replication factor A; Reviewed 88.09
PRK02801101 primosomal replication protein N; Provisional 87.87
PRK07459121 single-stranded DNA-binding protein; Provisional 87.65
PRK14699484 replication factor A; Provisional 87.55
PRK13150159 cytochrome c-type biogenesis protein CcmE; Reviewe 87.17
PRK05425327 asparagine synthetase AsnA; Provisional 87.05
PRK07217311 replication factor A; Reviewed 87.01
PRK12366 637 replication factor A; Reviewed 86.88
PRK13165160 cytochrome c-type biogenesis protein CcmE; Reviewe 86.85
PRK13254148 cytochrome c-type biogenesis protein CcmE; Reviewe 86.72
PRK00286438 xseA exodeoxyribonuclease VII large subunit; Revie 85.97
TIGR00469 460 pheS_mito phenylalanyl-tRNA synthetase, mitochondr 85.31
PRK12366637 replication factor A; Reviewed 85.25
TIGR00237432 xseA exodeoxyribonuclease VII, large subunit. This 84.4
PRK08486182 single-stranded DNA-binding protein; Provisional 83.9
PRK10917 681 ATP-dependent DNA helicase RecG; Provisional 83.88
TIGR00617608 rpa1 replication factor-a protein 1 (rpa1). This f 83.42
PF1507286 DUF4539: Domain of unknown function (DUF4539) 83.34
PRK06863168 single-stranded DNA-binding protein; Provisional 83.2
PRK07211485 replication factor A; Reviewed 82.28
PRK07275162 single-stranded DNA-binding protein; Provisional 82.19
PF03590244 AsnA: Aspartate-ammonia ligase; InterPro: IPR00461 81.53
PRK05813219 single-stranded DNA-binding protein; Provisional 80.99
PRK06751173 single-stranded DNA-binding protein; Provisional 80.58
PRK13159155 cytochrome c-type biogenesis protein CcmE; Reviewe 80.57
>PLN02221 asparaginyl-tRNA synthetase Back     alignment and domain information 
Probab=100.00  E-value=1.2e-100  Score=830.28  Aligned_cols=505  Identities=75%  Similarity=1.197  Sum_probs=446.2

Q ss_pred             CCCCCC-Cccccccccccccc--ccccccccceehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCC
Q 010544            1 MADNEL-PVDQVATMDLNDDA--VQRHQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSC   77 (507)
Q Consensus         1 ~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg   77 (507)
                      |.|.-. |++|+|+++|-.++  +|-++++.|++|++|+...+.+.++.|++|+|+|||+++|.+|+++++|++|||+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~V~I~GWV~~iR~~Gk~~i~Fl~LRDgs~   80 (572)
T PLN02221          1 MGDEIVPPANQLAAVSLENDGSTVQKAQFSDRVLIRSILDRPDGGAGLAGQKVRIGGWVKTGREQGKGTFAFLEVNDGSC   80 (572)
T ss_pred             CCCCCCChHHhhhheeccCCCcccccccccCceEHHHHhccccCChhcCCCEEEEEEEEEehhhCCCceEEEEEEeCCcc
Confidence            455544 46899999998876  456689999999999976666788899999999999999999943489999999995


Q ss_pred             CceEEEEEeCCcchhcccCCCCcEEEEEEEEeCCCC--CCcceeEEEEeEEEEeeCCCCCCCCCCCCCCChhhhcccccc
Q 010544           78 PANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPE--GTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPF  155 (507)
Q Consensus        78 ~~~IQvVv~~~~~~~~~~L~~gs~V~V~G~v~~~~~--g~~~~~El~v~~i~vls~a~~~~~Pl~~~~~~~e~~r~~~~l  155 (507)
                      .+.||||++++.....+.|+.||+|.|+|+|+.++.  +++|++||+++++.|||++++.++|++.+.++.|++|+++||
T Consensus        81 ~g~iQvVv~~~~~~~~~~L~~ES~V~V~G~V~~~~~~~~~~~~iEl~v~~i~vl~~a~~~~~Pi~~~~~~~e~lrr~~hL  160 (572)
T PLN02221         81 PANLQVMVDSSLYDLSTLVATGTCVTVDGVLKVPPEGKGTKQKIELSVEKVIDVGTVDPTKYPLPKTKLTLEFLRDVLHL  160 (572)
T ss_pred             cccEEEEEcCchhhHHhcCCCceEEEEEEEEEeCCccCCCCccEEEEEeEEEEEecCCCCCCCCCCCcCChHHHhhcchh
Confidence            445999998764333346899999999999998764  245799999999999999975689999888899999999999


Q ss_pred             ccCcHHHHHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHH
Q 010544          156 RPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAA  235 (507)
Q Consensus       156 ~~R~~~~~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~  235 (507)
                      |.|++.++++||+||.+.+++|+||+++||+||+||+|++++||||+++|+|+|+.+........++.++..+..++||+
T Consensus       161 R~R~~~~~Ai~RiRS~i~~aiR~ff~~~gFiEI~TP~Lt~s~~EGg~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (572)
T PLN02221        161 RSRTNSISAVARIRNALAFATHSFFQEHSFLYIHTPIITTSDCEGAGEMFQVTTLINYTERLEQDLIDNPPPTEADVEAA  240 (572)
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeeccccCCCCccceeeeecccccccccccccccCcccchhhhhh
Confidence            99999999999999999999999999999999999999999999999999998865433333344555666667789999


Q ss_pred             HHHHHhhhhhHHhhhccccchhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHH
Q 010544          236 KLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVE  315 (507)
Q Consensus       236 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le  315 (507)
                      +++|.++|+.++++|+++.|+|++.|+++++..+++...-.+......|++|.+.|+..|+.+||++++||+||||||||
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dyFg~~ayLtqS~QLy~e  320 (572)
T PLN02221        241 RLIVKERGEVVAQLKAAKASKEEITAAVAELKIAKESLAHIEERSKLKPGLPKKDGKIDYSKDFFGRQAFLTVSGQLQVE  320 (572)
T ss_pred             hhhhhhhcchhhhhhccccchhhhhhhhhhhhhhhhhhhhhhhhhhcccCCcccccccccccccCCCCeeeccCHHHHHH
Confidence            99999999999999999999999999999999999888888888888899998889999999999999999999999999


Q ss_pred             HHhhccCcEEEEeeccccCCCCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhh
Q 010544          316 TYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCI  395 (507)
Q Consensus       316 ~l~~g~~rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~  395 (507)
                      ++++|++|||+||||||||+++|+||||||||||+||+|.|++|+|+++|+||+++++.+.++|.++++.++..++...+
T Consensus       321 ~~~~~l~rVfeIgP~FRAE~s~T~RHL~EFtmlE~Emaf~d~~dvm~l~E~lv~~i~~~l~~~~~~~l~~l~~~~~~~~~  400 (572)
T PLN02221        321 TYACALSSVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFADLEDDMNCAEAYVKYMCKWLLDKCFDDMELMAKNFDSGCI  400 (572)
T ss_pred             HHHHhcCCeEEEccceecCCCCCCcccccccceeeeeecCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcCchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999998888887766655556


Q ss_pred             hhhccccCCCceeeeHHHHHHHHHhhhhcCCccccccccccccchHHHHHHHHHHcCCCeEEEecCCCCccceeeecCCc
Q 010544          396 NRLRMVASTPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDL  475 (507)
Q Consensus       396 ~~l~~~~~~pf~rity~eAi~~l~~~~~~~~~~~~~~~~g~dl~~e~Er~L~e~~~~~P~fVtdyP~~~~Pfy~~~~~d~  475 (507)
                      +.|+..+..||+||||.||+++|++....|.+++..++||.||++++|++|++.++++|+||+|||..++||||+.++|+
T Consensus       401 ~~l~~~~~~pf~RIty~EAi~~L~~~~~~g~~~~~~~~~G~dl~~e~Er~L~~~~~~~pvfv~dyP~~~~pfy~~~~~d~  480 (572)
T PLN02221        401 DRLRMVASTPFGRITYTEAIELLEEAVAKGKEFDNNVEWGIDLASEHERYLTEVLFQKPLIVYNYPKGIKAFYMRLNDDE  480 (572)
T ss_pred             hhhhhccCCCceEEEHHHHHHHHHhhhhcCCCCCCCcchhhhhhHHHHHHHHHHhcCCcEEEEcCChhhCcccccCCCCC
Confidence            66666678899999999999999875333444444568999999999999999777899999999999999999888788


Q ss_pred             CeEEEEEEEcCCceEEeccccccccccccc
Q 010544          476 KTVAAMDVLVPKVTCFFKKFQALDWLLYFI  505 (507)
Q Consensus       476 ~~~~rFDLl~pgg~EI~~GsqRe~~~~~l~  505 (507)
                      .+++|||||+||++||++|+||+|+|++|.
T Consensus       481 ~~~~~fDLl~~g~~El~~g~~R~~r~e~l~  510 (572)
T PLN02221        481 KTVAAMDVLVPKVGELIGGSQREERYDVIK  510 (572)
T ss_pred             ceEEEEEEecCCceEECCHHHHHHHHHHHH
Confidence            899999999998889999999999999863

>PLN02532 asparagine-tRNA synthetase Back     alignment and domain information
>PLN02603 asparaginyl-tRNA synthetase Back     alignment and domain information
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00425 asparagine-tRNA ligase; Provisional Back     alignment and domain information
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00457 asnS asparaginyl-tRNA synthetase Back     alignment and domain information
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated Back     alignment and domain information
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type Back     alignment and domain information
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>PTZ00401 aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02850 aspartate-tRNA ligase Back     alignment and domain information
>PRK12445 lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial Back     alignment and domain information
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02502 lysyl-tRNA synthetase Back     alignment and domain information
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00417 lysine-tRNA ligase; Provisional Back     alignment and domain information
>PTZ00385 lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK02983 lysS lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type Back     alignment and domain information
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00476 aspS aspartyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional Back     alignment and domain information
>PLN02903 aminoacyl-tRNA ligase Back     alignment and domain information
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain Back     alignment and domain information
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK06462 asparagine synthetase A; Reviewed Back     alignment and domain information
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain Back     alignment and domain information
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX Back     alignment and domain information
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain Back     alignment and domain information
>PRK09350 poxB regulator PoxA; Provisional Back     alignment and domain information
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain Back     alignment and domain information
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS Back     alignment and domain information
>cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS) Back     alignment and domain information
>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS) Back     alignment and domain information
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS) Back     alignment and domain information
>cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS) Back     alignment and domain information
>cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS Back     alignment and domain information
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS) Back     alignment and domain information
>cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs Back     alignment and domain information
>cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs) Back     alignment and domain information
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands Back     alignment and domain information
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>TIGR02367 PylS pyrrolysyl-tRNA synthetase Back     alignment and domain information
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes Back     alignment and domain information
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain Back     alignment and domain information
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain Back     alignment and domain information
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated Back     alignment and domain information
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional Back     alignment and domain information
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>TIGR00442 hisS histidyl-tRNA synthetase Back     alignment and domain information
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit Back     alignment and domain information
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain Back     alignment and domain information
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain Back     alignment and domain information
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional Back     alignment and domain information
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain Back     alignment and domain information
>PRK09194 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II Back     alignment and domain information
>TIGR00414 serS seryl-tRNA synthetase Back     alignment and domain information
>PRK05431 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain Back     alignment and domain information
>PLN02788 phenylalanine-tRNA synthetase Back     alignment and domain information
>CHL00201 syh histidine-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I Back     alignment and domain information
>PLN02530 histidine-tRNA ligase Back     alignment and domain information
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00418 thrS threonyl-tRNA synthetase Back     alignment and domain information
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit Back     alignment and domain information
>PRK12444 threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32) Back     alignment and domain information
>PLN02972 Histidyl-tRNA synthetase Back     alignment and domain information
>PRK08661 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK03991 threonyl-tRNA synthetase; Validated Back     alignment and domain information
>PLN02908 threonyl-tRNA synthetase Back     alignment and domain information
>PRK12325 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A Back     alignment and domain information
>PLN02837 threonine-tRNA ligase Back     alignment and domain information
>PRK12420 histidyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit Back     alignment and domain information
>PRK14799 thrS threonyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02320 seryl-tRNA synthetase Back     alignment and domain information
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK04173 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1) Back     alignment and domain information
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain Back     alignment and domain information
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ Back     alignment and domain information
>PLN02678 seryl-tRNA synthetase Back     alignment and domain information
>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1) Back     alignment and domain information
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE) Back     alignment and domain information
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase Back     alignment and domain information
>COG5235 RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif) Back     alignment and domain information
>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit Back     alignment and domain information
>cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32) Back     alignment and domain information
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] Back     alignment and domain information
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00156 conserved hypothetical protein TIGR00156 Back     alignment and domain information
>COG3111 Periplasmic protein with OB-fold [Function unknown] Back     alignment and domain information
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32) Back     alignment and domain information
>PRK10053 hypothetical protein; Provisional Back     alignment and domain information
>PF10451 Stn1: Telomere regulation protein Stn1; InterPro: IPR018856 The budding yeast protein Stn1 is a DNA-binding protein which has specificity for telomeric DNA Back     alignment and domain information
>PRK07373 DNA polymerase III subunit alpha; Reviewed Back     alignment and domain information
>COG4085 Predicted RNA-binding protein, contains TRAM domain [General function prediction only] Back     alignment and domain information
>PRK06461 single-stranded DNA-binding protein; Reviewed Back     alignment and domain information
>PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [] Back     alignment and domain information
>PRK00960 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05672 dnaE2 error-prone DNA polymerase; Validated Back     alignment and domain information
>PRK15491 replication factor A; Provisional Back     alignment and domain information
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PRK14699 replication factor A; Provisional Back     alignment and domain information
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed Back     alignment and domain information
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated Back     alignment and domain information
>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70) Back     alignment and domain information
>PRK13480 3'-5' exoribonuclease YhaM; Provisional Back     alignment and domain information
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed Back     alignment and domain information
>PTZ00213 asparagine synthetase A; Provisional Back     alignment and domain information
>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG Back     alignment and domain information
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated Back     alignment and domain information
>cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14) Back     alignment and domain information
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria Back     alignment and domain information
>PF08661 Rep_fac-A_3: Replication factor A protein 3; InterPro: IPR013970 Replication factor A is involved in eukaryotic DNA replication, recombination and repair Back     alignment and domain information
>cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia Back     alignment and domain information
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed Back     alignment and domain information
>PRK15491 replication factor A; Provisional Back     alignment and domain information
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>cd04484 polC_OBF polC_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold nucleic acid binding domain of Bacillus subtilis type C replicative DNA polymerase III alpha subunit (polC) Back     alignment and domain information
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family Back     alignment and domain information
>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB) Back     alignment and domain information
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK07211 replication factor A; Reviewed Back     alignment and domain information
>PRK02801 primosomal replication protein N; Provisional Back     alignment and domain information
>PRK07459 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>PRK14699 replication factor A; Provisional Back     alignment and domain information
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed Back     alignment and domain information
>PRK05425 asparagine synthetase AsnA; Provisional Back     alignment and domain information
>PRK07217 replication factor A; Reviewed Back     alignment and domain information
>PRK12366 replication factor A; Reviewed Back     alignment and domain information
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed Back     alignment and domain information
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed Back     alignment and domain information
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed Back     alignment and domain information
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial Back     alignment and domain information
>PRK12366 replication factor A; Reviewed Back     alignment and domain information
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit Back     alignment and domain information
>PRK08486 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>TIGR00617 rpa1 replication factor-a protein 1 (rpa1) Back     alignment and domain information
>PF15072 DUF4539: Domain of unknown function (DUF4539) Back     alignment and domain information
>PRK06863 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>PRK07211 replication factor A; Reviewed Back     alignment and domain information
>PRK07275 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>PF03590 AsnA: Aspartate-ammonia ligase; InterPro: IPR004618 Aspartate--ammonia ligase (asparagine synthetase) 6 Back     alignment and domain information
>PRK05813 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>PRK06751 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query507
1x54_A434 Crystal Structure Of Asparaginyl-trna Synthetase Fr 3e-24
2xgt_A435 Asparaginyl-Trna Synthetase From Brugia Malayi Comp 8e-18
2xti_A437 Asparaginyl-Trna Synthetase From Brugia Malayi Comp 9e-18
1b8a_A438 Aspartyl-trna Synthetase Length = 438 3e-13
3nel_A438 Aspartyl-Trna Synthetase Complexed With Aspartic Ac 7e-13
3m4p_A456 Entamoeba Histolytica Asparaginyl-Trna Synthetase ( 1e-12
1wyd_A429 Crystal Structure Of Aspartyl-Trna Synthetase From 2e-10
1n9w_A422 Crystal Structure Of The Non-Discriminating And Arc 5e-10
1asy_A490 Class Ii Aminoacyl Transfer Rna Synthetases: Crysta 1e-09
1eov_A487 Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.1 1e-09
3i7f_A548 Aspartyl Trna Synthetase From Entamoeba Histolytica 4e-06
1eqr_A 590 Crystal Structure Of Free Aspartyl-Trna Synthetase 7e-04
1c0a_A 585 Crystal Structure Of The E. Coli Aspartyl-Trna Synt 8e-04
>pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From Pyrococcus Horikoshii Complexed With Asparaginyl-adenylate Length = 434 Back     alignment and structure 
Iteration: 1

 Score =  109 bits (273), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/190 (36%), Positives = 99/190 (52%), Gaps = 15/190 (7%)
Query: 299 FFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLK 358
           +F + A+L+ S QL +E     +  V++  P+FRAE S T RHL EFW +E E A+ DL 
Sbjct: 178 YFDKYAYLSQSAQLYLEAAIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLW 237
Query: 359 DDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXX 418
           D M   E  V +M    L+    ++E M ++   +  N        PF RI+Y       
Sbjct: 238 DIMKVEEELVSYMVQRTLELRKKEIE-MFRDDLTTLKN-----TEPPFPRISYDEAIDIL 291
Query: 419 XXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN-DDLKT 477
                        VEWG DL ++ ER LTE +F +P  VY YPK IKAFYM+ + +D + 
Sbjct: 292 QSKG-------VNVEWGDDLGADEERVLTE-EFDRPFFVYGYPKHIKAFYMKEDPNDPRK 343
Query: 478 VAAMDVLVPK 487
           V A D+L P+
Sbjct: 344 VLASDMLAPE 353
>pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed With The Sulphamoyl Analogue Of Asparaginyl-Adenylate Length = 435 Back     alignment and structure
>pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg Length = 437 Back     alignment and structure
>pdb|1B8A|A Chain A, Aspartyl-trna Synthetase Length = 438 Back     alignment and structure
>pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid Length = 438 Back     alignment and structure
>pdb|3M4P|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs) In Complex With Asparaginyl-Adenylate Length = 456 Back     alignment and structure
>pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Sulfolobus Tokodaii Length = 429 Back     alignment and structure
>pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal- Type Aspartyl-Trna Synthetase From Thermus Thermophilus Length = 422 Back     alignment and structure
>pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal Structure Of Yeast Aspartyl-Trna Synthetase Complexed With Trna Asp Length = 490 Back     alignment and structure
>pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From Yeast Length = 487 Back     alignment and structure
>pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica Length = 548 Back     alignment and structure
>pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From Escherichia Coli Length = 590 Back     alignment and structure
>pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase : Trnaasp : Aspartyl-Adenylate Complex Length = 585 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query507
3m4p_A456 Ehasnrs, asparaginyl-tRNA synthetase, putative; am 1e-94
3m4p_A456 Ehasnrs, asparaginyl-tRNA synthetase, putative; am 1e-50
1x54_A434 Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe 3e-93
1x54_A434 Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe 8e-53
2xgt_A435 Asparaginyl-tRNA synthetase, cytoplasmic; ligase, 1e-92
2xgt_A435 Asparaginyl-tRNA synthetase, cytoplasmic; ligase, 3e-52
1nnh_A294 Asparaginyl-tRNA synthetase-related peptide; struc 2e-79
1nnh_A294 Asparaginyl-tRNA synthetase-related peptide; struc 7e-20
1wyd_A429 Hypothetical aspartyl-tRNA synthetase; archaea, LI 4e-74
1wyd_A429 Hypothetical aspartyl-tRNA synthetase; archaea, LI 2e-41
3nem_A438 Aspartyl-tRNA synthetase; rossmann fold, OB fold, 1e-70
3nem_A438 Aspartyl-tRNA synthetase; rossmann fold, OB fold, 7e-44
1n9w_A422 Aspartyl-tRNA synthetase 2; biosynthetic protein; 1e-67
1n9w_A422 Aspartyl-tRNA synthetase 2; biosynthetic protein; 6e-40
1eov_A487 ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy 5e-62
1eov_A487 ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy 2e-35
3i7f_A548 Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi 4e-61
3i7f_A548 Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi 2e-18
3i7f_A548 Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi 2e-09
2djv_A79 Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS d 6e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1c0a_A 585 Aspartyl tRNA synthetase; protein-RNA complex, lig 1e-05
1l0w_A580 Aspartyl-tRNA synthetase; space-grown crystal, dim 4e-05
1e1o_A504 Lysyl-tRNA synthetase, heat inducible; ligase, ami 4e-05
3a74_A493 Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, 5e-05
1d2d_A59 TRNA synthetase, tRNA ligase; tRNA synthetase (lig 1e-04
1x59_A73 Histidyl-tRNA synthetase; hisrs, structural genomi 2e-04
1fyj_A57 Multifunctional aminoacyl-tRNA synthetase; helix-t 2e-04
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Length = 456 Back     alignment and structure
 Score =  294 bits (754), Expect = 1e-94
 Identities = 51/192 (26%), Positives = 97/192 (50%), Gaps = 13/192 (6%)

Query: 298 DFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDL 357
            +F   A+LT S QL +E+   ++   +    ++RAE S T RHLAE+  +E E+ F   
Sbjct: 198 QYFNEPAYLTQSSQLYLESVIASLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISF 257

Query: 358 KDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVEL 417
           +D +N  E  V  + D ++    D +  M  +           + + PF+R+TY +A++ 
Sbjct: 258 EDLLNHLEDLVCTVIDNVMAVHGDKIRKMNPHLK---------LPTRPFKRMTYADAIKY 308

Query: 418 LEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYM-RLNDDLK 476
                    + +   E+G D++ + ER +T+ +   P+ + ++P  +KAFYM ++     
Sbjct: 309 CN--DHGILNKDKPFEYGEDISEKPERQMTD-EIGCPIFMIHFPSKMKAFYMSKVPGHPD 365

Query: 477 TVAAMDVLVPKV 488
              ++D+L+P V
Sbjct: 366 LTESVDLLMPGV 377
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Length = 456 Back     alignment and structure
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Length = 434 Back     alignment and structure
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Length = 434 Back     alignment and structure
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Length = 435 Back     alignment and structure
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Length = 435 Back     alignment and structure
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Length = 294 Back     alignment and structure
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Length = 294 Back     alignment and structure
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Length = 429 Back     alignment and structure
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Length = 429 Back     alignment and structure
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Length = 438 Back     alignment and structure
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Length = 438 Back     alignment and structure
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Length = 422 Back     alignment and structure
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Length = 422 Back     alignment and structure
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Length = 487 Back     alignment and structure
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Length = 487 Back     alignment and structure
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Length = 548 Back     alignment and structure
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Length = 548 Back     alignment and structure
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Length = 548 Back     alignment and structure
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Length = 585 Back     alignment and structure
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Length = 580 Back     alignment and structure
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Length = 504 Back     alignment and structure
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Length = 493 Back     alignment and structure
>1d2d_A TRNA synthetase, tRNA ligase; tRNA synthetase (ligase), protein transcription; NMR {Cricetulus griseus} SCOP: a.16.1.3 PDB: 1r1b_A Length = 59 Back     alignment and structure
>1x59_A Histidyl-tRNA synthetase; hisrs, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73 Back     alignment and structure
>1fyj_A Multifunctional aminoacyl-tRNA synthetase; helix-turn-helix, ligase; NMR {Homo sapiens} SCOP: a.16.1.3 Length = 57 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query507
3nem_A438 Aspartyl-tRNA synthetase; rossmann fold, OB fold, 100.0
3m4p_A456 Ehasnrs, asparaginyl-tRNA synthetase, putative; am 100.0
2xgt_A435 Asparaginyl-tRNA synthetase, cytoplasmic; ligase, 100.0
1wyd_A429 Hypothetical aspartyl-tRNA synthetase; archaea, LI 100.0
3i7f_A548 Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi 100.0
1n9w_A422 Aspartyl-tRNA synthetase 2; biosynthetic protein; 100.0
4ex5_A529 Lysine--tRNA ligase; structural genomics, niaid, n 100.0
1x54_A434 Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe 100.0
3bju_A521 Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
1e1o_A504 Lysyl-tRNA synthetase, heat inducible; ligase, ami 100.0
1eov_A487 ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy 100.0
3a74_A493 Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, 100.0
1l0w_A580 Aspartyl-tRNA synthetase; space-grown crystal, dim 100.0
1c0a_A 585 Aspartyl tRNA synthetase; protein-RNA complex, lig 100.0
4ah6_A 617 Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo 100.0
3a5y_A345 GENX, putative lysyl-tRNA synthetase; aminoacyl-tR 100.0
1nnh_A294 Asparaginyl-tRNA synthetase-related peptide; struc 100.0
3qtc_A290 Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet 99.79
12as_A330 Asparagine synthetase; ligase, nitrogen fixation; 99.26
2rhq_A294 Phenylalanyl-tRNA synthetase alpha chain; heterote 98.77
1b7y_A350 Phers, protein (phenylalanyl-tRNA synthetase); enz 98.65
3dsq_A288 Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t 98.36
2dq3_A425 Seryl-tRNA synthetase; coiled-coil, homodimer, str 97.85
3pco_A327 Phenylalanyl-tRNA synthetase, alpha subunit; amino 97.79
2i4l_A458 Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud 97.76
1evl_A401 Threonyl-tRNA synthetase; amino acid recognition, 97.74
1qe0_A420 Histidyl-tRNA synthetase; class II tRNA synthetase 97.54
1hc7_A477 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 97.49
1ses_A421 Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A 97.48
2j3l_A 572 Prolyl-tRNA synthetase; class II aminoacyl- T synt 97.46
1nyr_A645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 97.44
3uh0_A460 Threonyl-tRNA synthetase, mitochondrial; threonine 97.44
1wu7_A434 Histidyl-tRNA synthetase; ligase, structural genom 97.43
1z7m_A344 ATP phosphoribosyltransferase regulatory subunit; 97.41
3od1_A400 ATP phosphoribosyltransferase regulatory subunit; 97.39
3qne_A485 Seryl-tRNA synthetase, cytoplasmic; amino acid bio 97.35
3l4g_A508 Phenylalanyl-tRNA synthetase alpha chain; aminoacy 97.35
1h4v_B421 Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA 97.3
1htt_A423 Histidyl-tRNA synthetase; complex (tRNA synthetase 97.28
1qf6_A642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 97.23
4e51_A467 Histidine--tRNA ligase; seattle structural genomic 97.23
1nj8_A459 Proline-tRNA synthetase, proline--tRNA ligase; cla 97.2
3kdf_D132 Replication protein A 32 kDa subunit; wheat GERM c 97.2
2dq0_A455 Seryl-tRNA synthetase; coiled-coil, homodimer, str 97.19
3lss_A484 Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, 97.16
4hvc_A 519 Bifunctional glutamate/proline--tRNA ligase; ligas 97.13
1nj1_A 501 PROR, proline-tRNA synthetase, proline--tRNA ligas 97.12
3err_A536 Fusion protein of microtubule binding domain from 97.1
4gop_B136 Putative uncharacterized protein; OB fold, ssDNA b 97.1
4g84_A464 Histidine--tRNA ligase, cytoplasmic; synthetase; 2 97.1
1wle_A501 Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo 97.09
3net_A465 Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas 97.08
3vbb_A522 Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l 97.08
3rac_A373 Histidine-tRNA ligase; structural genomics, PSI-bi 97.05
3lc0_A456 Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t 96.98
3a32_A471 Probable threonyl-tRNA synthetase 1; aeropyrum per 96.97
3dm3_A105 Replication factor A; probably plays AN essential 96.92
1ati_A 505 Glycyl-tRNA synthetase; protein biosynthesis, liga 96.92
2cja_A522 Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE 96.91
3ial_A 518 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 96.9
4g85_A517 Histidine-tRNA ligase, cytoplasmic; synthetase; 3. 96.83
2k50_A115 Replication factor A related protein; uncharacteri 96.78
3e0e_A97 Replication protein A; structural genomics, PSI-2, 96.76
3kf6_A159 Protein STN1; OB fold, chromosomal protein, DNA-bi 96.69
1nnx_A109 Protein YGIW; structural genomics, hypothetical pr 96.16
2pi2_A270 Replication protein A 32 kDa subunit; FULL-length 96.11
3mf2_A346 BLL0957 protein; aminoacyl-tRNA synthetase, seryl- 95.61
3cmq_A415 Phenylalanyl-tRNA synthetase, mitochondrial; class 95.51
1g5h_A 454 Mitochondrial DNA polymerase accessory subunit; in 95.2
3ikl_A459 DNA polymerase subunit gamma-2, mitochondrial; tra 95.13
1o7i_A119 SSB, SSO2364, single stranded DNA binding protein; 95.05
2kbn_A109 Conserved protein; nucleic acid binding protein, b 94.9
2zt5_A 693 Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP 94.58
1usy_A275 ATP phosphoribosyltransferase regulatory subunit; 94.07
3kf8_A220 Protein STN1; OB fold; 2.40A {Candida tropicalis m 93.9
2k75_A106 Uncharacterized protein TA0387; closed beta barrel 93.74
1ynx_A114 Replication factor-A protein 1; canonical OB fold, 93.11
2du3_A 534 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 92.76
2du7_A 549 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 91.11
2odr_B 648 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 90.85
2odr_A 665 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 90.76
2odr_D 685 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 90.7
2odr_C 701 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 90.51
3kdf_A121 Replication protein A 14 kDa subunit; wheat GERM c 89.78
3fhw_A115 Primosomal replication protein N; PRIB BPR162 X-RA 89.39
1jmc_A246 Protein (replication protein A (RPA)); human ssDNA 88.69
3l4g_B589 Phenylalanyl-tRNA synthetase beta chain; aminoacyl 88.36
2rhq_B795 Phenylalanyl-tRNA synthetase beta chain; heterotet 88.27
3au7_A402 TIAS, putative uncharacterized protein; ATP hydrol 88.24
2hpi_A1220 DNA polymerase III alpha subunit; POL-beta-like nu 87.87
1j6q_A136 Cytochrome C maturation protein E; all-beta protei 87.86
4gop_A114 Putative uncharacterized protein; OB fold, ssDNA b 86.49
1sr3_A136 APO-CCME; OB fold, beta barrel, flexible C-termina 85.33
3ig2_A213 Phenylalanyl-tRNA synthetase beta chain; phers, MC 84.46
2pi2_E142 Replication protein A 14 kDa subunit; FULL-length 84.15
3ica_A213 Phenylalanyl-tRNA synthetase beta chain; APC61692. 82.96
3mxn_B150 RECQ-mediated genome instability protein 2; bloom 82.76
3vdy_A116 SSB, single-stranded DNA-binding protein SSBB; OB 81.9
3k8a_A103 Putative primosomal replication protein; beta-barr 80.51
4gop_C444 Putative uncharacterized protein; OB fold, ssDNA b 80.31
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Back     alignment and structure
Probab=100.00  E-value=6.1e-81  Score=662.53  Aligned_cols=360  Identities=27%  Similarity=0.451  Sum_probs=318.3

Q ss_pred             ccceehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc-----hhcccCCCCcE
Q 010544           27 SDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-----DLGQLVPTGTC  101 (507)
Q Consensus        27 ~~r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~-----~~~~~L~~gs~  101 (507)
                      .+++++++|.      .+..|++|+|+|||+++|.+|  |++|++|||++|.  ||||++++..     +..+.|+.||+
T Consensus         2 ~rt~~~~~l~------~~~~g~~V~v~Gwv~~~R~~g--~~~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~~~~l~~~~~   71 (438)
T 3nem_A            2 YRTHYSSEIT------EELNGQKVKVAGWVWEVKDLG--GIKFLWIRDRDGI--VQITAPKKKVDPELFKLIPKLRSEDV   71 (438)
T ss_dssp             CCSCCGGGCC------GGGTTCEEEEEEEEEEEEEET--TEEEEEEEETTEE--EEEEEETTTSCHHHHHHGGGCCTTCE
T ss_pred             ceEEEHHHcc------hhcCCCEEEEEEEEEEEecCC--CeEEEEEEECCee--EEEEEeCCcCCHHHHHHHhcCCCCCE
Confidence            3567888875      356799999999999999999  8999999999985  9999997642     23457999999


Q ss_pred             EEEEEEEeCCCCCCcceeEEEEeEEEEeeCCCCCCCCCCCCC---CChhhhccccccccCcHHHHHHHHHHHHHHHHHHH
Q 010544          102 VYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTK---LTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHT  178 (507)
Q Consensus       102 V~V~G~v~~~~~g~~~~~El~v~~i~vls~a~~~~~Pl~~~~---~~~e~~r~~~~l~~R~~~~~~~~~~rs~i~~~~r~  178 (507)
                      |.|+|+|++++. ..|++||+++++++||+|. .++|++.+.   ++.|+++++||||+|++.++++|++||.|++++|+
T Consensus        72 V~V~G~v~~~~~-~~~~~el~~~~i~vl~~~~-~~lP~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~Rs~i~~~iR~  149 (438)
T 3nem_A           72 VAVEGVVNFTPK-AKLGFEILPEKIVVLNRAE-TPLPLDPTGKVKAELDTRLDNRFMDLRRPEVMAIFKIRSSVFKAVRD  149 (438)
T ss_dssp             EEEEEEEEECTT-STTSEEEEEEEEEEEECBC-SSCSSCTTSSSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEEeCCC-CCCcEEEEEEEEEEEecCC-CCCCCCccccccCCHHHHhhchHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            999999999874 4679999999999999996 578887543   78899999999999999999999999999999999


Q ss_pred             HHHhCCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhhHHhhhccccchhh
Q 010544          179 FLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREA  258 (507)
Q Consensus       179 fl~~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~  258 (507)
                      ||.++||+||+||+|++++|||+++.|++.                                                  
T Consensus       150 f~~~~gF~EVeTPiL~~~~~eg~~~~f~~~--------------------------------------------------  179 (438)
T 3nem_A          150 FFHENGFIEIHTPKIIATATEGGTELFPMK--------------------------------------------------  179 (438)
T ss_dssp             HHHHTTCEECCCCSEESSCSSCSSSCCEEE--------------------------------------------------
T ss_pred             HHHHCCcEEEeCCEEecCCCCCCccceeEe--------------------------------------------------
Confidence            999999999999999999999999976542                                                  


Q ss_pred             hhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHHh-hccCcEEEEeeccccCCCC
Q 010544          259 ISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYA-CAVSNVYTFGPTFRAEHSH  337 (507)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l~-~g~~rVfeI~p~FRaE~~~  337 (507)
                                                              ||++++||+||||||||+++ +|++||||||||||||+++
T Consensus       180 ----------------------------------------~~~~~~yL~~Spql~~q~l~~~g~~rvf~i~~~FR~E~~~  219 (438)
T 3nem_A          180 ----------------------------------------YFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHN  219 (438)
T ss_dssp             ----------------------------------------ETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSSC
T ss_pred             ----------------------------------------eCCccEEEecChHHHHHHHHhcCCCceEEEcceEECCCCC
Confidence                                                    57889999999999999874 8899999999999999999


Q ss_pred             CCCCccccccccccccCCC-HHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhccccCCCceeeeHHHHHH
Q 010544          338 TSRHLAEFWMVEPEMAFSD-LKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVE  416 (507)
Q Consensus       338 t~rHl~EFtmLE~E~af~d-~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~~~pf~rity~eAi~  416 (507)
                      ++||+||||||||||+|+| ++|+|+++|+||+++++.+.+++..++++++..++         .++.||+||||.||++
T Consensus       220 t~RH~pEFt~le~e~a~~~~~~d~m~~~E~li~~~~~~v~~~~~~~l~~~~~~l~---------~~~~pf~rity~eai~  290 (438)
T 3nem_A          220 TTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELE---------EPKLPFPRVSYDKALE  290 (438)
T ss_dssp             CTTCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTCCCC---------CCCSSCCEEEHHHHHH
T ss_pred             CcccccceeeeeeeeccCccHHHHHHHHHHHHHHHHHHHHhhhhhhHhhcccccc---------cCCCCceEEEHHHHHH
Confidence            9999999999999999999 99999999999999999999888777777665431         3567999999999999


Q ss_pred             HHHhhhhcCCccccccccccccchHHHHHHHHHHc----CCCeEEEecCCCCccceeee-cCCcCeEEEEEEEcCCceEE
Q 010544          417 LLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKF----QKPVIVYNYPKGIKAFYMRL-NDDLKTVAAMDVLVPKVTCF  491 (507)
Q Consensus       417 ~l~~~~~~~~~~~~~~~~g~dl~~e~Er~L~e~~~----~~P~fVtdyP~~~~Pfy~~~-~~d~~~~~rFDLl~pgg~EI  491 (507)
                      +++..   |    ...+||.|+++++|++|++.+.    ++|+||+|||++++|||++. ++||++++|||||+| |+||
T Consensus       291 ~l~~~---g----~~~~~~~dl~~~~e~~l~~~~~~~~~~~p~fi~~yP~~~~pfy~k~~~~~p~~~~rfdL~~~-G~Ei  362 (438)
T 3nem_A          291 ILGDL---G----KEIPWGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKYDNKPEICRAFDLEYR-GVEI  362 (438)
T ss_dssp             HHHHT---T----CCCCTTSCCCHHHHHHHHHHHHHHHCCSEEEEESCBGGGSCTTBCBCTTSTTBBSEEEEEET-TEEE
T ss_pred             HHHHc---C----CCCCCCCCCCcHHHHHHHHHhhhhcCCCCEEEECCchhhCccccccCCCCCCceEEEEEEEC-CEEE
Confidence            98753   3    3456899999999999998763    78999999999999998765 457899999999997 5899


Q ss_pred             eccccccccccccc
Q 010544          492 FKKFQALDWLLYFI  505 (507)
Q Consensus       492 ~~GsqRe~~~~~l~  505 (507)
                      +||++|++|++++.
T Consensus       363 ~nG~~el~d~~~l~  376 (438)
T 3nem_A          363 SSGGQREHRHDILV  376 (438)
T ss_dssp             EEEEEBCCCHHHHH
T ss_pred             EeCeeecCCHHHHH
Confidence            99999999998764
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Back     alignment and structure
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Back     alignment and structure
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Back     alignment and structure
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Back     alignment and structure
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Back     alignment and structure
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Back     alignment and structure
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Back     alignment and structure
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Back     alignment and structure
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Back     alignment and structure
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Back     alignment and structure
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Back     alignment and structure
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Back     alignment and structure
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Back     alignment and structure
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} Back     alignment and structure
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Back     alignment and structure
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Back     alignment and structure
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* Back     alignment and structure
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A* Back     alignment and structure
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* Back     alignment and structure
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* Back     alignment and structure
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A Back     alignment and structure
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} Back     alignment and structure
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Back     alignment and structure
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* Back     alignment and structure
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Back     alignment and structure
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A Back     alignment and structure
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Back     alignment and structure
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Back     alignment and structure
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* Back     alignment and structure
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* Back     alignment and structure
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} Back     alignment and structure
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A Back     alignment and structure
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A Back     alignment and structure
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Back     alignment and structure
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} Back     alignment and structure
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 Back     alignment and structure
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B Back     alignment and structure
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Back     alignment and structure
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Back     alignment and structure
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} Back     alignment and structure
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Back     alignment and structure
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A Back     alignment and structure
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} Back     alignment and structure
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} Back     alignment and structure
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Back     alignment and structure
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Back     alignment and structure
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} Back     alignment and structure
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A Back     alignment and structure
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A Back     alignment and structure
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii} Back     alignment and structure
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* Back     alignment and structure
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Back     alignment and structure
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} Back     alignment and structure
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} Back     alignment and structure
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} Back     alignment and structure
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A Back     alignment and structure
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} Back     alignment and structure
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1 Back     alignment and structure
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A Back     alignment and structure
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* Back     alignment and structure
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A Back     alignment and structure
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* Back     alignment and structure
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} Back     alignment and structure
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3 Back     alignment and structure
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A Back     alignment and structure
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A Back     alignment and structure
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* Back     alignment and structure
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404} Back     alignment and structure
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum} Back     alignment and structure
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* Back     alignment and structure
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} Back     alignment and structure
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A Back     alignment and structure
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A Back     alignment and structure
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A Back     alignment and structure
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* Back     alignment and structure
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A* Back     alignment and structure
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A* Back     alignment and structure
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A Back     alignment and structure
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} Back     alignment and structure
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1 Back     alignment and structure
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} Back     alignment and structure
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C Back     alignment and structure
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} Back     alignment and structure
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B Back     alignment and structure
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis} Back     alignment and structure
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090} Back     alignment and structure
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 507
d1n9wa2304 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (As 5e-17
d1n9wa2304 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (As 1e-11
d1nnha_293 d.104.1.1 (A:) Hypothetical protein PF1951 {Archae 8e-16
d1nnha_293 d.104.1.1 (A:) Hypothetical protein PF1951 {Archae 8e-12
d1eova2353 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (As 3e-15
d1eova2353 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (As 9e-10
d1e1oa2342 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS 2e-14
d1e1oa2342 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS 1e-10
d1c0aa3346 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synt 2e-11
d1c0aa3346 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synt 1e-10
d1l0wa3356 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synt 6e-09
d1l0wa3356 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synt 2e-08
d1n9wa193 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) 8e-09
d1eova1134 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspR 4e-08
d1b8aa2335 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (As 9e-08
d1l0wa1104 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS 7e-06
d1c0aa1106 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS 6e-05
d1d2da_56 a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthas 0.001
d1fyja_57 a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthas 0.001
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Length = 304 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Aspartyl-tRNA synthetase (AspRS)
species: Thermus thermophilus, AspRS-2 [TaxId: 274]

 Score = 79.4 bits (195), Expect = 5e-17
 Identities = 51/200 (25%), Positives = 83/200 (41%), Gaps = 23/200 (11%)

Query: 291 GKIDYTQ-DFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVE 349
           G       D+F ++A+L  S QL  +        VY   P +R E  HTSRHL E+  ++
Sbjct: 49  GGSGLFGVDYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLD 108

Query: 350 PEMAFSDLKDD-MNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFER 408
            EM F   ++D M   EA +  M +  L+   D++  +   +                 R
Sbjct: 109 VEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATW---------PSFPQDIPR 159

Query: 409 ITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQK----PVIVYNYPKGI 464
           +T+ EA  +L+         E     G DL+ E ER L E   ++     + V  YP+ +
Sbjct: 160 LTHAEAKRILK--------EELGYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSV 211

Query: 465 KAFYMRLNDDLKTVAAMDVL 484
           + FY    +D  T +   + 
Sbjct: 212 RPFYTYPEEDGTTRSFDLLF 231
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Length = 304 Back     information, alignment and structure
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 293 Back     information, alignment and structure
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 293 Back     information, alignment and structure
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 353 Back     information, alignment and structure
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 353 Back     information, alignment and structure
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Length = 342 Back     information, alignment and structure
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Length = 342 Back     information, alignment and structure
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Length = 346 Back     information, alignment and structure
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Length = 346 Back     information, alignment and structure
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 356 Back     information, alignment and structure
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 356 Back     information, alignment and structure
>d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Length = 93 Back     information, alignment and structure
>d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 134 Back     information, alignment and structure
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Length = 335 Back     information, alignment and structure
>d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 104 Back     information, alignment and structure
>d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Length = 106 Back     information, alignment and structure
>d1d2da_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 56 Back     information, alignment and structure
>d1fyja_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element {Human (Homo sapiens) [TaxId: 9606]} Length = 57 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query507
d1e1oa2342 Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g 100.0
d1eova2353 Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S 100.0
d1n9wa2304 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 100.0
d1b8aa2335 Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ 100.0
d1l0wa3356 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 100.0
d1c0aa3346 Aspartyl-tRNA synthetase (AspRS) {Escherichia coli 100.0
d1nnha_293 Hypothetical protein PF1951 {Archaeon Pyrococcus f 100.0
d1n9wa193 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 99.8
d1b8aa1103 Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ 99.78
d1c0aa1106 Aspartyl-tRNA synthetase (AspRS) {Escherichia coli 99.76
d1l0wa1104 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 99.75
d1eova1134 Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S 99.72
d1e1oa1143 Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g 99.62
d1z7ma1318 ATP phosphoribosyltransferase regulatory subunit H 97.7
d1jjca_266 Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS 97.66
d1nyra4291 Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a 97.56
d1hc7a2272 Prolyl-tRNA synthetase (ProRS) {Thermus thermophil 97.27
d1qf6a4291 Threonyl-tRNA synthetase (ThrRS) {Escherichia coli 97.19
d1b76a2331 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 97.05
d1wu7a2327 Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop 97.03
d1qe0a2325 Histidyl-tRNA synthetase (HisRS) {Staphylococcus a 96.93
d1h4vb2324 Histidyl-tRNA synthetase (HisRS) {Thermus thermoph 96.81
d1kmma2322 Histidyl-tRNA synthetase (HisRS) {Escherichia coli 96.54
d1seta2311 Seryl-tRNA synthetase (SerRS) {Thermus thermophilu 96.05
d1nnxa_106 Hypothetical protein YgiW {Escherichia coli [TaxId 96.01
d1nj8a3268 Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc 95.91
d1jmca1116 Replication protein A 70 KDa subunit (RPA70) {Huma 95.76
d2pi2a1128 Replication protein A 32 KDa subunit (RPA32) fragm 95.76
d1o7ia_115 Archaeal ssDNA-binding protein {Archaeon Sulfolobu 95.54
d1nj1a3265 Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth 94.91
d1usya_275 ATP phosphoribosyltransferase regulatory subunit H 94.12
d2pi2e1115 Replication protein A 14 KDa (RPA14) subunit {Huma 93.89
d1v1qa_111 Primosomal replication protein N, PriB {Escherichi 88.14
d1atia2394 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 85.06
d1sr3a_114 Heme chaperone CcmE {Escherichia coli [TaxId: 562] 84.39
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Lysyl-tRNA synthetase (LysRS)
species: Escherichia coli, gene lysU [TaxId: 562]

Probab=100.00  E-value=7.1e-54  Score=439.99  Aligned_cols=257  Identities=17%  Similarity=0.251  Sum_probs=210.1

Q ss_pred             hhhhcccccccc-CcHHHHHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCC
Q 010544          146 LEFLRDRIPFRP-RTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKN  224 (507)
Q Consensus       146 ~e~~r~~~~l~~-R~~~~~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~  224 (507)
                      .|+..++|||++ |++.++++|++||.|++++|+||.++||+||+||+|++++|||+++.|.++.               
T Consensus         2 ~~~Rl~~R~lDl~r~~~~~~~~r~Rs~i~~~iR~ff~~~gFiEV~TPil~~~~~~~~~~~f~~~~---------------   66 (342)
T d1e1oa2           2 QEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHH---------------   66 (342)
T ss_dssp             TTHHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEEE---------------
T ss_pred             hHhhhhcchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCccccCCCCCCcceeecc---------------
Confidence            356678999998 8899999999999999999999999999999999999999999999887642               


Q ss_pred             CCCChhhHHHHHHHHHhhhhhHHhhhccccchhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCcee
Q 010544          225 PPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQA  304 (507)
Q Consensus       225 p~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~  304 (507)
                                                                                               ++|+.++
T Consensus        67 -------------------------------------------------------------------------~~~~~~~   73 (342)
T d1e1oa2          67 -------------------------------------------------------------------------NALDLDM   73 (342)
T ss_dssp             -------------------------------------------------------------------------TTTTEEE
T ss_pred             -------------------------------------------------------------------------cCCCccc
Confidence                                                                                     2588899


Q ss_pred             eEeechhhhHHHH-hhccCcEEEEeeccccCCCCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccch
Q 010544          305 FLTVSGQLQVETY-ACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDM  383 (507)
Q Consensus       305 yL~~S~Ql~le~l-~~g~~rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i  383 (507)
                      ||+||||+|||++ ++|++|||+||||||+|++ ++||+||||||||||+|+|++|+|+++|+|+++++..+.+.+....
T Consensus        74 yL~~Spql~~k~~l~~g~~~vf~i~p~FR~E~~-~~rHl~EFtmlE~e~a~~~~~d~m~~~e~l~~~i~~~~~~~~~~~~  152 (342)
T d1e1oa2          74 YLRIAPELYLKRLVVGGFERVFEINRNFRNEGI-SVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTY  152 (342)
T ss_dssp             EECSCSHHHHHHHHHHTCCEEEEEEEEECCCCC-CC-CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSSSEEEE
T ss_pred             ccchhhHHHHHHHhhhcccceeeeccccccccc-cccchHHHHHHHHHHHhhhhhhHHHhhhHHHHHHHHHHhCcchhhc
Confidence            9999999999965 6789999999999999988 7799999999999999999999999999999999999987664222


Q ss_pred             hhhhccCCchhhhhhccccCCCceeeeHHHHHHHHHhhhhc--------------CCcccccccccc-ccchHHHHHHHH
Q 010544          384 EFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVKE--------------GKHFENKVEWGI-DLASEHERYLTE  448 (507)
Q Consensus       384 ~~~~~~~~~~~~~~l~~~~~~pf~rity~eAi~~l~~~~~~--------------~~~~~~~~~~g~-dl~~e~Er~L~e  448 (507)
                      ...            ...+..||+++++.++++.+......              ...+.....||. ++..+.+..+++
T Consensus       153 ~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (342)
T d1e1oa2         153 GEH------------VFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAE  220 (342)
T ss_dssp             TTE------------EEETTSCCEEEEHHHHHHHHSTTCCGGGGGSHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHHTG
T ss_pred             cch------------hcccCCchhhhhHHHHHHHHhccccHhhhhhhHHHHHHHHHcCCCcccccchhHHHHHHHHHhhH
Confidence            110            01256799999999999987532100              000111223442 233445555666


Q ss_pred             HHcCCCeEEEecCCCCccceeeecCCcCeEEEEEEEcCCceEEecccccccccccc
Q 010544          449 VKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVTCFFKKFQALDWLLYF  504 (507)
Q Consensus       449 ~~~~~P~fVtdyP~~~~Pfy~~~~~d~~~~~rFDLl~pgg~EI~~GsqRe~~~~~l  504 (507)
                      ..+..|+||+|||..++||||+.++++.++++||||++ |+||+|||+|+|+++.+
T Consensus       221 ~~~~~p~fi~~~P~~~~~f~~~~~~~~~~~~~fdl~~~-g~El~~G~~r~~d~~~~  275 (342)
T d1e1oa2         221 AHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIG-GREIGNGFSELNDAEDQ  275 (342)
T ss_dssp             GGCCSCEEEECCBGGGCTTBCBCSSCTTBBSEEEEEET-TEEEEEEEEBCCCHHHH
T ss_pred             hhccCCCcCCCCccccChhhccccccchhhhhhhcccC-CEeecCCccccCCHHHH
Confidence            66789999999999999999988888899999999996 68999999999998764
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Back     information, alignment and structure
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Back     information, alignment and structure
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Back     information, alignment and structure
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Back     information, alignment and structure
>d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Back     information, alignment and structure
>d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Back     information, alignment and structure
>d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1e1oa1 b.40.4.1 (A:11-153) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Back     information, alignment and structure
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Back     information, alignment and structure
>d1nnxa_ b.40.10.1 (A:) Hypothetical protein YgiW {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Back     information, alignment and structure
>d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit (RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Back     information, alignment and structure
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2pi2e1 b.40.4.3 (E:3-117) Replication protein A 14 KDa (RPA14) subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v1qa_ b.40.4.3 (A:) Primosomal replication protein N, PriB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1sr3a_ b.40.9.1 (A:) Heme chaperone CcmE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure