Citrus Sinensis ID: 010553

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------
MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLDHLDI
ccEEEEEccccccccEEEcccccccccccccEEEEEcccccccccccccHHHHHHHHHHHHHcccccEEEEEEcccccccccEEEEEEcccHHHHHHHHHcccccccccEEEEEccccEEEEEEEEEccccccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEccccccccccccccccEEEccccccccccccccHHHHcccHHHHHHHHHHccccccccccccccccccEEEEEccccccHHHHHHHHHHHHHHcHHHHHcccEEEEcccEEEEEEccEEEEEEcHHHHHHHHHHccccccccccccccccccccHHHHHHcccccccEEEEEccccHHHHHHHHHHHcccccHHHHHHHHHHccccccccccc
ccEEEEEEcccEcccEEEEEEEccccccccEEEEEcccHHHHccEEEEcHHHHHHHHHHHHHHHcccEEEEEEcccccccccEEEEEEcccHHHHHHHHHccccccccEEEEEccccccEEEEEEEEcEcccccEEEEEEccEEccccEHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHccEEEEEEEEcccccEcccccccEccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccccccccccccccccccccEEEEEEEcccccccccccccHHHEEEccccccEEEHcHHHHHHHccHHHHHHHHHHHccccccccccHHHccEcEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccEEEEcccEEEEEcccEEEEEEcHHHHHHHHHHcccccccEEEEEcccccccHHHHHHHcccccccEEEEEEHHcHHHHHHHHHHHHccccccHHHHHHHHccEEEcccccc
meyhqkysrgkpvttltchvlpvdskdrqgtrirfwpdkqvfttaiqFDHNTIAGRIRELAFLNPKLTIALrkedsdpeknqyneyFFAGGLEEYVQWLNtdkkplhdvvgfrkdvdgITIDLALQWCSDAYSDTMLGYANsirtidggthieGVKASLTRTLNSlgkksktvkdkdislsgehvREGLTCIIsvrvpnpefegqtktrlgnpevrKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQksvlrssslpgkladcssttpeeseifivegdsaggsakqgrDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALglgvkgedfKKEALRYHKIIIltdadvdgaHIRTLLLTFFYRYQKtlfdegciyvgvpplykvergkqvqycyddaelkkvkssfpsnaLYSIQRFKglgemmpvqlwettlnPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANlvnldhldi
meyhqkysrgkpvttltchvlpvdskdrqgtrirfwpdkqvfttaIQFDHNTIAGRIRELAFLNPKLTIalrkedsdpekNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRtlnslgkksktvkdkdislsgehvregltciisvrvpnpefegqtktrlgnpevrKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRardlvrqksvlrssslpgkladcssttpeESEIFIVEgdsaggsakqgrdrrfqailplrgkilnverKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIiltdadvdgaHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELkkvkssfpsNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNaanlvnldhldi
MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVldsilskslsalkaalaakrardlVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLDHLDI
************VTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALR*********QYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRT********************EHVREGLTCIISVRVPN***************VRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALA*******************************************************FQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNL*****
MEYHQKYSRGKPVTTLTCHVL*VDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDL***********LP**LADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKK**********YSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLDHLDI
***********PVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKS********************ESEIFIVEGDS********RDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLDHLDI
MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAA*******************G*LADCSSTTPEESEIFIVEGDS*********DRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLDHLDI
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MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLDHLDI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query507 2.2.26 [Sep-21-2011]
Q5YLB4731 DNA gyrase subunit B, chl N/A no 0.998 0.692 0.871 0.0
Q9SS38730 DNA gyrase subunit B, chl yes no 1.0 0.694 0.840 0.0
Q94BZ7732 DNA gyrase subunit B, mit yes no 1.0 0.692 0.836 0.0
Q5NBJ3729 DNA gyrase subunit B, chl yes no 0.996 0.692 0.808 0.0
O50627637 DNA gyrase subunit B OS=B yes no 0.970 0.772 0.499 1e-140
P77993636 DNA gyrase subunit B OS=T yes no 0.966 0.770 0.483 1e-135
Q8CQK4643 DNA gyrase subunit B OS=S yes no 0.972 0.766 0.498 1e-135
Q5HK03643 DNA gyrase subunit B OS=S yes no 0.972 0.766 0.498 1e-135
Q5HJZ1644 DNA gyrase subunit B OS=S yes no 0.974 0.767 0.503 1e-133
P66937644 DNA gyrase subunit B OS=S yes no 0.974 0.767 0.503 1e-133
>sp|Q5YLB4|GYRB_NICBE DNA gyrase subunit B, chloroplastic/mitochondrial OS=Nicotiana benthamiana GN=GYRB PE=2 SV=1 Back     alignment and function desciption
 Score =  913 bits (2359), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/506 (87%), Positives = 482/506 (95%)

Query: 2   EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 61
           EY QKYSRGKP+TTL CH LPV+ +DRQGT IRFWPDK+VFTT +QFD+NTIAGRIRELA
Sbjct: 226 EYQQKYSRGKPITTLICHDLPVEMRDRQGTAIRFWPDKEVFTTEMQFDYNTIAGRIRELA 285

Query: 62  FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITI 121
           FLNP+LTIAL+KED DPEK Q NEYF+AGGL EYV+WLN DKKPLHDV+GFRK+ DGITI
Sbjct: 286 FLNPELTIALKKEDIDPEKIQCNEYFYAGGLVEYVKWLNADKKPLHDVLGFRKEADGITI 345

Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
           D+ALQWCSDAYSDTMLGYANSIRTIDGGTHI+GVKA+LTR LN+LGKKSKT+K+KDISLS
Sbjct: 346 DMALQWCSDAYSDTMLGYANSIRTIDGGTHIDGVKAALTRILNNLGKKSKTIKEKDISLS 405

Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
           GEHVREGLTC+ISV+VPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI
Sbjct: 406 GEHVREGLTCVISVKVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 465

Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
           LSKSL+ALKAALAAKRAR+LVRQKSVL+SSSLPGKLADCS+T PEE+EIFIVEGDSAGGS
Sbjct: 466 LSKSLNALKAALAAKRARELVRQKSVLKSSSLPGKLADCSATNPEEAEIFIVEGDSAGGS 525

Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
           AKQGRDRRFQAILPLRGKILN+ERKDEAAMYKNEEIQNLI  LGLGVKGEDFKKEALRYH
Sbjct: 526 AKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKEALRYH 585

Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
           KIIILTDADVDGAHIRTLLLTFF+RYQ+ LF+EGCIYVGVPPLYKVERGKQV YCYDDAE
Sbjct: 586 KIIILTDADVDGAHIRTLLLTFFFRYQRALFEEGCIYVGVPPLYKVERGKQVYYCYDDAE 645

Query: 422 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 481
           LKKV+ SFPSNA Y+IQRFKGLGEMMP QLWETT+NPE R+LKQLV+EDAAEANVVFSSL
Sbjct: 646 LKKVQRSFPSNASYNIQRFKGLGEMMPAQLWETTMNPETRLLKQLVVEDAAEANVVFSSL 705

Query: 482 MGARVDTRKELIQNAANLVNLDHLDI 507
           MG+RVD RK+LIQN+A+++NL+ LDI
Sbjct: 706 MGSRVDIRKQLIQNSASMMNLEQLDI 731
Seems to play a critical role in chloroplast nucleoid partitioning by regulating DNA topology. DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner.
Nicotiana benthamiana (taxid: 4100)
EC: 5EC: .EC: 9EC: 9EC: .EC: 1EC: .EC: 3
>sp|Q9SS38|GYRBP_ARATH DNA gyrase subunit B, chloroplastic OS=Arabidopsis thaliana GN=GYRBC PE=2 SV=3 Back     alignment and function description
>sp|Q94BZ7|GYRBM_ARATH DNA gyrase subunit B, mitochondrial OS=Arabidopsis thaliana GN=GYRBM PE=2 SV=1 Back     alignment and function description
>sp|Q5NBJ3|GYRB_ORYSJ DNA gyrase subunit B, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=GYRB PE=2 SV=1 Back     alignment and function description
>sp|O50627|GYRB_BACHD DNA gyrase subunit B OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=gyrB PE=3 SV=1 Back     alignment and function description
>sp|P77993|GYRB_THEMA DNA gyrase subunit B OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=gyrB PE=3 SV=2 Back     alignment and function description
>sp|Q8CQK4|GYRB_STAES DNA gyrase subunit B OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gyrB PE=3 SV=1 Back     alignment and function description
>sp|Q5HK03|GYRB_STAEQ DNA gyrase subunit B OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gyrB PE=3 SV=1 Back     alignment and function description
>sp|Q5HJZ1|GYRB_STAAC DNA gyrase subunit B OS=Staphylococcus aureus (strain COL) GN=gyrB PE=3 SV=3 Back     alignment and function description
>sp|P66937|GYRB_STAAN DNA gyrase subunit B OS=Staphylococcus aureus (strain N315) GN=gyrB PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query507
255562314 732 DNA gyrase subunit B, putative [Ricinus 1.0 0.692 0.869 0.0
75288399 731 RecName: Full=DNA gyrase subunit B, chlo 0.998 0.692 0.871 0.0
224086827 653 predicted protein [Populus trichocarpa] 0.998 0.774 0.853 0.0
297739950 707 unnamed protein product [Vitis vinifera] 1.0 0.717 0.861 0.0
225441215 719 PREDICTED: DNA gyrase subunit B, chlorop 1.0 0.705 0.861 0.0
224139720 700 predicted protein [Populus trichocarpa] 0.982 0.711 0.841 0.0
449488224 719 PREDICTED: DNA gyrase subunit B, chlorop 0.998 0.703 0.847 0.0
356504692 726 PREDICTED: DNA gyrase subunit B, chlorop 1.0 0.698 0.836 0.0
449453173 719 PREDICTED: DNA gyrase subunit B, chlorop 0.998 0.703 0.845 0.0
356571931 724 PREDICTED: DNA gyrase subunit B, chlorop 1.0 0.700 0.832 0.0
>gi|255562314|ref|XP_002522164.1| DNA gyrase subunit B, putative [Ricinus communis] gi|223538602|gb|EEF40205.1| DNA gyrase subunit B, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  916 bits (2368), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/507 (86%), Positives = 484/507 (95%)

Query: 1   MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
           MEY Q+YSRG PVT L CH L V+S+DRQGT +RFWPDK+VFTTAI+FD+NTIAGR+REL
Sbjct: 226 MEYRQRYSRGNPVTILMCHSLAVESRDRQGTCVRFWPDKEVFTTAIEFDYNTIAGRVREL 285

Query: 61  AFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGIT 120
           AFLNPKLTI L+KED+DPEKNQY+EYF+AGGL EYV+WLNTDKKPLHDVVGF K++DGIT
Sbjct: 286 AFLNPKLTITLKKEDNDPEKNQYDEYFYAGGLIEYVKWLNTDKKPLHDVVGFGKEIDGIT 345

Query: 121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
           ID+ALQWCSDAYSDT+LGYANSIRTIDGGTHI+G KASLTRTLNSLGKKSK +K+KDI+L
Sbjct: 346 IDMALQWCSDAYSDTILGYANSIRTIDGGTHIDGFKASLTRTLNSLGKKSKIIKEKDINL 405

Query: 181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 240
           SGEHVREGLTCI+SV+VP+PEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS
Sbjct: 406 SGEHVREGLTCIVSVKVPSPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 465

Query: 241 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
           ILSKSL+ALKAALAAK+AR+LVRQKSVLR+SSLPGKLADCSST PEESEIFIVEGDSAGG
Sbjct: 466 ILSKSLNALKAALAAKKARELVRQKSVLRTSSLPGKLADCSSTNPEESEIFIVEGDSAGG 525

Query: 301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
           SAKQGRDRRFQAILPLRGKILN+ERKDEAAMYKNEEIQNLI  LGLGVKGEDFKKEALRY
Sbjct: 526 SAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKEALRY 585

Query: 361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
           HKIIILTDADVDGAHIRTLLLTFF+RYQK LF+EGCIYVGVPPLYKVERGKQV YCYD+A
Sbjct: 586 HKIIILTDADVDGAHIRTLLLTFFFRYQKALFEEGCIYVGVPPLYKVERGKQVYYCYDEA 645

Query: 421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
           ELKK++SSFP NA Y+IQRFKGLGEMMP+QLWETT++PEQR+LKQLV+EDAAEANVVFSS
Sbjct: 646 ELKKLRSSFPQNASYNIQRFKGLGEMMPLQLWETTMDPEQRLLKQLVVEDAAEANVVFSS 705

Query: 481 LMGARVDTRKELIQNAANLVNLDHLDI 507
           LMGARVD RKELIQ++A  VN+D LDI
Sbjct: 706 LMGARVDVRKELIQSSARAVNIDLLDI 732

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|75288399|sp|Q5YLB4.1|GYRB_NICBE RecName: Full=DNA gyrase subunit B, chloroplastic/mitochondrial; Flags: Precursor gi|38017095|gb|AAR07943.1| DNA gyrase B subunit [Nicotiana benthamiana] Back     alignment and taxonomy information
>gi|224086827|ref|XP_002307976.1| predicted protein [Populus trichocarpa] gi|222853952|gb|EEE91499.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297739950|emb|CBI30132.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225441215|ref|XP_002266668.1| PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224139720|ref|XP_002323244.1| predicted protein [Populus trichocarpa] gi|222867874|gb|EEF05005.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449488224|ref|XP_004157973.1| PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356504692|ref|XP_003521129.1| PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|449453173|ref|XP_004144333.1| PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356571931|ref|XP_003554124.1| PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query507
TAIR|locus:2146698732 GYRB2 "DNA GYRASE B2" [Arabido 1.0 0.692 0.798 2.5e-223
UNIPROTKB|Q5NBJ3729 GYRB "DNA gyrase subunit B, ch 0.996 0.692 0.764 4.3e-212
UNIPROTKB|Q7NHM9644 gyrB "DNA gyrase subunit B" [G 0.988 0.777 0.538 1.6e-143
UNIPROTKB|A8IIG8649 TOP3 "DNA gyrase subunit B-lik 0.994 0.776 0.511 2.8e-130
TIGR_CMR|CHY_2705635 CHY_2705 "DNA gyrase, B subuni 0.964 0.770 0.484 4.9e-124
TIGR_CMR|BA_0005640 BA_0005 "DNA gyrase, B subunit 0.966 0.765 0.475 4.1e-120
UNIPROTKB|P05652638 gyrB "DNA gyrase subunit B" [B 0.972 0.772 0.459 6.7e-120
UNIPROTKB|Q8TQG0634 gyrB "DNA gyrase subunit B" [M 0.968 0.774 0.478 6.2e-117
UNIPROTKB|P77993636 gyrB "DNA gyrase subunit B" [T 0.964 0.768 0.463 7.9e-117
UNIPROTKB|Q8A277653 gyrB "DNA gyrase subunit B" [B 0.974 0.756 0.445 5.3e-111
TAIR|locus:2146698 GYRB2 "DNA GYRASE B2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2156 (764.0 bits), Expect = 2.5e-223, P = 2.5e-223
 Identities = 405/507 (79%), Positives = 448/507 (88%)

Query:     1 MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIREL 60
             ME+ Q YSRGKP+TTLTC VLP++SK  +GT IRFWPDK+VFTTAI+FDHNTIAGRIREL
Sbjct:   226 MEHKQNYSRGKPITTLTCRVLPLESKGTKGTSIRFWPDKEVFTTAIEFDHNTIAGRIREL 285

Query:    61 AFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGIT 120
             AFLNPK+TI+L+KED DPEK QY+EY FAGGL EYV WLNTDK P+HDV+GFR++++G T
Sbjct:   286 AFLNPKVTISLKKEDDDPEKTQYSEYSFAGGLTEYVSWLNTDKNPIHDVLGFRREINGAT 345

Query:   121 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 180
             +D+ALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN+L KKSKTVK+KDISL
Sbjct:   346 VDVALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISL 405

Query:   181 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXX 240
             SGEHVREGLTCI+SV+VPNPEFEGQTKTRLGNPEVRK+VDQSVQEYLTE+LELHPD+   
Sbjct:   406 SGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEFLELHPDILES 465

Query:   241 XXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 300
                                  VR KSVL+SSSLPGKLADCSST PE SEIFIVEGDSAGG
Sbjct:   466 IISKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPEVSEIFIVEGDSAGG 525

Query:   301 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 360
             SAKQGRDRRFQAILPLRGKILN+ERKDEAAMYKNEEIQNLI  LGLGVKGEDFKKE LRY
Sbjct:   526 SAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKENLRY 585

Query:   361 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 420
             HKIIILTDADVDGAHIRTLLLTFF+RYQ+ LFD GCIYVGVPPL+KVERGK  QYCYDDA
Sbjct:   586 HKIIILTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKNAQYCYDDA 645

Query:   421 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 480
             +LKK+ S+FP+NA Y+IQRFKGLGEMMP QLWETT+NPE R+LKQLV++D AEAN+ FSS
Sbjct:   646 DLKKITSNFPANASYNIQRFKGLGEMMPEQLWETTMNPETRILKQLVVDDIAEANMTFSS 705

Query:   481 LMGARVDTRKELIQNAANLVNLDHLDI 507
             LMGARVD RKELI+NAA  +NL  LDI
Sbjct:   706 LMGARVDVRKELIKNAATRINLQRLDI 732
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA;ISS;IBA
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005694 "chromosome" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006200 "ATP catabolic process" evidence=IBA
GO:0006259 "DNA metabolic process" evidence=ISS
GO:0006261 "DNA-dependent DNA replication" evidence=IBA
GO:0006265 "DNA topological change" evidence=IEA;ISS;IBA
GO:0007059 "chromosome segregation" evidence=IBA
GO:0008094 "DNA-dependent ATPase activity" evidence=IBA
GO:0009330 "DNA topoisomerase complex (ATP-hydrolyzing)" evidence=IBA
GO:0003916 "DNA topoisomerase activity" evidence=IGI
UNIPROTKB|Q5NBJ3 GYRB "DNA gyrase subunit B, chloroplastic/mitochondrial" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q7NHM9 gyrB "DNA gyrase subunit B" [Gloeobacter violaceus PCC 7421 (taxid:251221)] Back     alignment and assigned GO terms
UNIPROTKB|A8IIG8 TOP3 "DNA gyrase subunit B-like protein" [Chlamydomonas reinhardtii (taxid:3055)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2705 CHY_2705 "DNA gyrase, B subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0005 BA_0005 "DNA gyrase, B subunit" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|P05652 gyrB "DNA gyrase subunit B" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)] Back     alignment and assigned GO terms
UNIPROTKB|Q8TQG0 gyrB "DNA gyrase subunit B" [Methanosarcina acetivorans C2A (taxid:188937)] Back     alignment and assigned GO terms
UNIPROTKB|P77993 gyrB "DNA gyrase subunit B" [Thermotoga maritima MSB8 (taxid:243274)] Back     alignment and assigned GO terms
UNIPROTKB|Q8A277 gyrB "DNA gyrase subunit B" [Bacteroides thetaiotaomicron VPI-5482 (taxid:226186)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P0A0K8GYRB_STAAU5, ., 9, 9, ., 1, ., 30.50390.97430.7670yesno
Q9SS38GYRBP_ARATH5, ., 9, 9, ., 1, ., 30.84021.00.6945yesno
Q6GD85GYRB_STAAS5, ., 9, 9, ., 1, ., 30.50390.97430.7670yesno
Q5YLB4GYRB_NICBE5, ., 9, 9, ., 1, ., 30.87150.99800.6922N/Ano
P0A0K7GYRB_STAAW5, ., 9, 9, ., 1, ., 30.50390.97430.7670yesno
P66936GYRB_STAAM5, ., 9, 9, ., 1, ., 30.50390.97430.7670yesno
P66937GYRB_STAAN5, ., 9, 9, ., 1, ., 30.50390.97430.7670yesno
Q5NBJ3GYRB_ORYSJ5, ., 9, 9, ., 1, ., 30.80830.99600.6927yesno
Q6GKU0GYRB_STAAR5, ., 9, 9, ., 1, ., 30.50390.97430.7670yesno
Q5HJZ1GYRB_STAAC5, ., 9, 9, ., 1, ., 30.50390.97430.7670yesno
Q94BZ7GYRBM_ARATH5, ., 9, 9, ., 1, ., 30.83621.00.6926yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.99.1.30.991
3rd Layer5.99.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.VI.1090.1
hypothetical protein (653 aa)
(Populus trichocarpa)
Predicted Functional Partners:
fgenesh4_pm.C_LG_X000986
hypothetical protein (932 aa)
• ••• • 0.989
fgenesh4_pg.C_scaffold_18720000001
Predicted protein (296 aa)
•     • 0.850
eugene3.00020856
hypothetical protein (483 aa)
•     • 0.778
fgenesh4_pg.C_scaffold_1424000002
hypothetical protein (780 aa)
      • 0.776
estExt_Genewise1_v1.C_LG_III0383
hypothetical protein (681 aa)
      • 0.683
gw1.XI.1444.1
aminoacyl-tRNA ligase (EC-6.1.1.4) (889 aa)
•     • 0.683
eugene3.29520003
annotation not avaliable (742 aa)
      • 0.663
grail3.3134000101
Predicted protein (100 aa)
      • 0.647
estExt_Genewise1_v1.C_LG_X6520
hypothetical protein (888 aa)
      • 0.640
gw1.X.1153.1
hypothetical protein; Excises uracil residues from the DNA which can arise as a result of misin [...] (216 aa)
•  •  • 0.640

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query507
PRK05644638 PRK05644, gyrB, DNA gyrase subunit B; Validated 0.0
COG0187635 COG0187, GyrB, Type IIA topoisomerase (DNA gyrase/ 0.0
TIGR01059654 TIGR01059, gyrB, DNA gyrase, B subunit 0.0
PRK05559631 PRK05559, PRK05559, DNA topoisomerase IV subunit B 0.0
smart00433594 smart00433, TOP2c, TopoisomeraseII 0.0
PRK14939 756 PRK14939, gyrB, DNA gyrase subunit B; Provisional 0.0
TIGR01058637 TIGR01058, parE_Gpos, DNA topoisomerase IV, B subu 1e-160
PTZ00109903 PTZ00109, PTZ00109, DNA gyrase subunit b; Provisio 1e-125
TIGR01055625 TIGR01055, parE_Gneg, DNA topoisomerase IV, B subu 4e-97
cd00822172 cd00822, TopoII_Trans_DNA_gyrase, TopoIIA_Trans_DN 5e-75
cd03366114 cd03366, TOPRIM_TopoIIA_GyrB, TOPRIM_TopoIIA_GyrB: 2e-73
cd01030115 cd01030, TOPRIM_TopoIIA_like, TOPRIM_TopoIIA_like: 2e-67
pfam00204173 pfam00204, DNA_gyraseB, DNA gyrase B 9e-62
PHA02569602 PHA02569, 39, DNA topoisomerase II large subunit; 5e-45
PTZ00108 1388 PTZ00108, PTZ00108, DNA topoisomerase 2-like prote 3e-35
PLN03128 1135 PLN03128, PLN03128, DNA topoisomerase 2; Provision 6e-31
pfam0098665 pfam00986, DNA_gyraseB_C, DNA gyrase B subunit, ca 7e-29
PLN03237 1465 PLN03237, PLN03237, DNA topoisomerase 2; Provision 2e-27
PRK14939756 PRK14939, gyrB, DNA gyrase subunit B; Provisional 3e-23
cd03365120 cd03365, TOPRIM_TopoIIA, TOPRIM_TopoIIA: topoisome 1e-21
PTZ00109903 PTZ00109, PTZ00109, DNA gyrase subunit b; Provisio 1e-18
pfam0175186 pfam01751, Toprim, Toprim domain 5e-18
cd00329107 cd00329, TopoII_MutL_Trans, MutL_Trans: transducer 2e-15
cd0018883 cd00188, TOPRIM, Topoisomerase-primase domain 9e-08
cd03481153 cd03481, TopoIIA_Trans_ScTopoIIA, TopoIIA_Trans_Sc 5e-04
>gnl|CDD|235542 PRK05644, gyrB, DNA gyrase subunit B; Validated Back     alignment and domain information 
 Score =  769 bits (1988), Expect = 0.0
 Identities = 276/505 (54%), Positives = 365/505 (72%), Gaps = 14/505 (2%)

Query: 3   YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 62
           Y+Q+Y RG PVT L      +   D  GT + F PD ++F T  +FD++T+A R+RELAF
Sbjct: 143 YYQEYERGVPVTPLEV----IGETDETGTTVTFKPDPEIFET-TEFDYDTLATRLRELAF 197

Query: 63  LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITI 121
           LN  L I L   D    + +   + + GG++EYV++LN +K+PLH + + F  + DGI +
Sbjct: 198 LNKGLKITLT--DEREGEEKEETFHYEGGIKEYVEYLNRNKEPLHEEPIYFEGEKDGIEV 255

Query: 122 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 181
           ++A+Q+  D YS+ +L +AN+I T +GGTH EG K +LTR +N   +K+K +K+KD +L+
Sbjct: 256 EVAMQYN-DGYSENILSFANNINTHEGGTHEEGFKTALTRVINDYARKNKLLKEKDDNLT 314

Query: 182 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 241
           GE VREGLT +ISV+ P P+FEGQTKT+LGN EVR +VD  V E L+E+LE +P+V   I
Sbjct: 315 GEDVREGLTAVISVKHPEPQFEGQTKTKLGNSEVRGIVDSVVSEALSEFLEENPNVAKKI 374

Query: 242 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 301
           + K++ A +A  AA++AR+L R+KS L SSSLPGKLADCSS  PEESE++IVEGDSAGGS
Sbjct: 375 VEKAILAARAREAARKARELTRRKSALESSSLPGKLADCSSKDPEESELYIVEGDSAGGS 434

Query: 302 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 361
           AKQGRDRRFQAILPLRGKILNVE+     + KNEEI+ LI ALG G+ G+DF    LRYH
Sbjct: 435 AKQGRDRRFQAILPLRGKILNVEKARLDKILKNEEIRALITALGTGI-GDDFDISKLRYH 493

Query: 362 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 421
           KIII+TDADVDGAHIRTLLLTFFYRY + L + G +Y+  PPLYK+++G + +Y Y D E
Sbjct: 494 KIIIMTDADVDGAHIRTLLLTFFYRYMRPLIEAGYVYIAQPPLYKIKKGGK-EYAYSDEE 552

Query: 422 LKKVKSSFP--SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS 479
           L ++ +      N  Y IQR+KGLGEM P QLWETT++PE R L Q+ IEDAAEA+ +FS
Sbjct: 553 LDEILAELKLKGNPKYGIQRYKGLGEMNPEQLWETTMDPETRTLLQVTIEDAAEADEIFS 612

Query: 480 SLMGARVDTRKELIQ-NAANLVNLD 503
            LMG  V+ R+E I+ NA  + NLD
Sbjct: 613 ILMGDDVEPRREFIEENAKYVRNLD 637

Length = 638
>gnl|CDD|223265 COG0187, GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233254 TIGR01059, gyrB, DNA gyrase, B subunit Back     alignment and domain information
>gnl|CDD|235501 PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed Back     alignment and domain information
>gnl|CDD|214659 smart00433, TOP2c, TopoisomeraseII Back     alignment and domain information
>gnl|CDD|237860 PRK14939, gyrB, DNA gyrase subunit B; Provisional Back     alignment and domain information
>gnl|CDD|130130 TIGR01058, parE_Gpos, DNA topoisomerase IV, B subunit, Gram-positive Back     alignment and domain information
>gnl|CDD|240272 PTZ00109, PTZ00109, DNA gyrase subunit b; Provisional Back     alignment and domain information
>gnl|CDD|130127 TIGR01055, parE_Gneg, DNA topoisomerase IV, B subunit, proteobacterial Back     alignment and domain information
>gnl|CDD|238419 cd00822, TopoII_Trans_DNA_gyrase, TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E Back     alignment and domain information
>gnl|CDD|173786 cd03366, TOPRIM_TopoIIA_GyrB, TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to the Escherichia coli GyrB subunit Back     alignment and domain information
>gnl|CDD|173780 cd01030, TOPRIM_TopoIIA_like, TOPRIM_TopoIIA_like: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II Back     alignment and domain information
>gnl|CDD|215785 pfam00204, DNA_gyraseB, DNA gyrase B Back     alignment and domain information
>gnl|CDD|177398 PHA02569, 39, DNA topoisomerase II large subunit; Provisional Back     alignment and domain information
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional Back     alignment and domain information
>gnl|CDD|215593 PLN03128, PLN03128, DNA topoisomerase 2; Provisional Back     alignment and domain information
>gnl|CDD|201537 pfam00986, DNA_gyraseB_C, DNA gyrase B subunit, carboxyl terminus Back     alignment and domain information
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional Back     alignment and domain information
>gnl|CDD|237860 PRK14939, gyrB, DNA gyrase subunit B; Provisional Back     alignment and domain information
>gnl|CDD|173785 cd03365, TOPRIM_TopoIIA, TOPRIM_TopoIIA: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II Back     alignment and domain information
>gnl|CDD|240272 PTZ00109, PTZ00109, DNA gyrase subunit b; Provisional Back     alignment and domain information
>gnl|CDD|216679 pfam01751, Toprim, Toprim domain Back     alignment and domain information
>gnl|CDD|238202 cd00329, TopoII_MutL_Trans, MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins Back     alignment and domain information
>gnl|CDD|173773 cd00188, TOPRIM, Topoisomerase-primase domain Back     alignment and domain information
>gnl|CDD|239563 cd03481, TopoIIA_Trans_ScTopoIIA, TopoIIA_Trans_ScTopoIIA: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topo IIA Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 507
COG0187635 GyrB Type IIA topoisomerase (DNA gyrase/topo II, t 100.0
TIGR01058637 parE_Gpos DNA topoisomerase IV, B subunit, Gram-po 100.0
PTZ00109903 DNA gyrase subunit b; Provisional 100.0
PRK05644638 gyrB DNA gyrase subunit B; Validated 100.0
PRK05559631 DNA topoisomerase IV subunit B; Reviewed 100.0
PRK14939756 gyrB DNA gyrase subunit B; Provisional 100.0
smart00433594 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras 100.0
TIGR01055625 parE_Gneg DNA topoisomerase IV, B subunit, proteob 100.0
TIGR01059654 gyrB DNA gyrase, B subunit. This model describes t 100.0
PHA02569602 39 DNA topoisomerase II large subunit; Provisional 100.0
PTZ00108 1388 DNA topoisomerase 2-like protein; Provisional 100.0
PLN03128 1135 DNA topoisomerase 2; Provisional 100.0
PLN03237 1465 DNA topoisomerase 2; Provisional 100.0
KOG0355 842 consensus DNA topoisomerase type II [Chromatin str 100.0
cd03366114 TOPRIM_TopoIIA_GyrB TOPRIM_TopoIIA_GyrB: topoisome 100.0
cd01030115 TOPRIM_TopoIIA_like TOPRIM_TopoIIA_like: topoisome 100.0
cd03365120 TOPRIM_TopoIIA TOPRIM_TopoIIA: topoisomerase-prima 100.0
cd00822172 TopoII_Trans_DNA_gyrase TopoIIA_Trans_DNA_gyrase: 100.0
PF00204173 DNA_gyraseB: DNA gyrase B; InterPro: IPR013506 DNA 100.0
cd03481153 TopoIIA_Trans_ScTopoIIA TopoIIA_Trans_ScTopoIIA: T 100.0
PF0098665 DNA_gyraseB_C: DNA gyrase B subunit, carboxyl term 99.94
PF01751100 Toprim: Toprim domain; InterPro: IPR006171 This is 99.21
cd00329107 TopoII_MutL_Trans MutL_Trans: transducer domain, h 98.8
PRK00095617 mutL DNA mismatch repair protein; Reviewed 98.47
PRK14939 756 gyrB DNA gyrase subunit B; Provisional 97.79
PRK04184535 DNA topoisomerase VI subunit B; Validated 96.18
TIGR00585312 mutl DNA mismatch repair protein MutL. All protein 94.56
cd0018883 TOPRIM Topoisomerase-primase domain. This is a nuc 92.94
TIGR01052488 top6b DNA topoisomerase VI, B subunit. This model 92.19
cd00823151 TopoIIB_Trans TopoIIB_Trans: Transducer domain, ha 89.29
PF09239160 Topo-VIb_trans: Topoisomerase VI B subunit, transd 87.77
PRK04017132 hypothetical protein; Provisional 80.73
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] Back     alignment and domain information 
Probab=100.00  E-value=1.7e-168  Score=1328.46  Aligned_cols=495  Identities=53%  Similarity=0.900  Sum_probs=469.2

Q ss_pred             CEEEEEecCCCCCCcceeeecCCCCCCCCCeEEEEEeCccccccccCCCHHHHHHHHHHHhccCCCcEEEEeecCCCCCC
Q 010553            1 MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEK   80 (507)
Q Consensus         1 k~y~q~F~~G~~~~~l~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~fd~~~l~~Rl~elA~Ln~Gl~I~l~der~~~~~   80 (507)
                      ++|+|+|++|++++++++++.  +.++++||+|+||||++||++ ..|++++|++|||++|||||||+|.|+|+|.... 
T Consensus       140 k~y~q~f~~G~~~~~l~~ig~--~~~~~~GT~V~F~PD~~iF~~-~~f~~~~l~~RlrelA~L~~gl~I~l~d~r~~~~-  215 (635)
T COG0187         140 KIYRQRFERGVPVTPLEVIGS--TDTKKTGTKVRFKPDPEIFGE-TEFDYEILKRRLRELAFLNKGVKITLTDERTGEE-  215 (635)
T ss_pred             EEEEEEEeCCCcCCCceeccc--CCCCCCccEEEEEcChHhcCC-cccCHHHHHHHHHHHhccCCCCEEEEEeccCCcc-
Confidence            579999999999999998821  245679999999999999986 5899999999999999999999999999997631 


Q ss_pred             CcceeEecCCCHHHHHHHHhcCCCCCCc-eeEEEEeccceEEEEeeeecCCCCCceeeeeeCceecCCCCcchhhHHHHH
Q 010553           81 NQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASL  159 (507)
Q Consensus        81 ~~~~~f~~~~Gl~~yv~~l~~~~~~~~~-~i~~~~~~~~~~veval~~s~~~~~~~~~SFvN~I~T~~GGTHv~g~~~al  159 (507)
                       .. .|||++||.+||++++.+++++++ ++++.++.+++.|||||||+ ++|+++++||||||+|++||||++||++||
T Consensus       216 -~~-~~~y~~Gl~~yv~~l~~~k~~l~~~~~~~~~~~~~~~vEvA~q~~-d~~~e~~~SFvNnI~T~eGGTH~~Gfr~al  292 (635)
T COG0187         216 -KK-EFHYEGGLKDYVEYLNKGKTPLHEEIFYFNGEKDGIAVEVALQWN-DGYSENILSFVNNIPTREGGTHEAGFRSAL  292 (635)
T ss_pred             -cc-eeecccHHHHHHHHHhcCCCccccCceecccCccceEEEEEEEEe-cCCceEEEEeecCccCCCCchHHHHHHHHH
Confidence             22 599999999999999999999996 66667777889999999999 899999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCCCCcCCCCCHHhHhcccEEEEEEeecCCCCCCccccccCChhhHhhhhHhhHHHHHHHHhhChHHHH
Q 010553          160 TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD  239 (507)
Q Consensus       160 ~~~in~~~kk~~~~k~~~~~i~~~diregL~~vvsv~i~nP~FegQTK~kL~n~~v~~~v~~~v~~~l~~~l~~n~~~~~  239 (507)
                      +|+||+|+++++++|+++  ++++||||||++||||+||||+|+||||+||+|++++.+|++++.+.|..||++||.+|+
T Consensus       293 tr~in~y~~~~~~~k~~~--l~g~Diregl~aviSvki~~PqFegQTK~KL~n~e~~~~V~~~v~~~~~~~l~enp~~a~  370 (635)
T COG0187         293 TRAINEYAKKKNLLKEGD--LTGDDIREGLTAVISVKIPDPQFEGQTKEKLGNSEVRSIVEKLVSEAFSLFLEENPQEAK  370 (635)
T ss_pred             HHHHHHHHHHhCcCcccC--CCHHHHhhccEEEEEEECCCCCcCcccccccccHHHHHHHHHHHHHHHHHHHHHChHHHH
Confidence            999999999999988766  999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCCCceEEEeecCCCCCcccccCCCCceEeeccCCc
Q 010553          240 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGK  319 (507)
Q Consensus       240 ~I~~~~~~~~k~r~aakkar~~~~~k~~~~~~~lpgKL~Dc~~~~~~~~eL~lvEGDSA~gsak~gRdr~~qailPLrGK  319 (507)
                      .|+++++.+++||+||++||+.+|+|+.++...|||||+||++++|++|||||||||||||||||||||+||||||||||
T Consensus       371 ~i~~k~i~aa~aR~aarkare~~R~k~~~~~~~LpGKLadC~skd~~~~ELfiVEGDSAGGSAKqgRdR~~QAILPLRGK  450 (635)
T COG0187         371 KIVEKAIAAAKAREAARKARELTRRKSALDIPGLPGKLADCTSKDPEKSELFLVEGDSAGGSAKQGRDREFQAILPLRGK  450 (635)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCcCcccccCCcccceEEEEecCCcchhhhhccCccceEEecccCc
Confidence            99999999999999999999999999988999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCHHHHhhCcchHHHHHHhcCCccCCcCcccccccceEEEeecCCCCChhhHHHHHHHHHHHHHHHhhcCcEEE
Q 010553          320 ILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYV  399 (507)
Q Consensus       320 iLNv~ka~~~ki~~N~Ei~~li~alG~~~~~~~~~~~~LRY~kiiImtDaD~DG~HI~~Llltff~~~~p~Li~~G~v~~  399 (507)
                      |||||+|+.++|++|+||++|++|||||++ .+||+++||||||||||||||||+|||+|||||||||||+||+.||||+
T Consensus       451 iLNVeka~~~kil~N~EI~~ii~AlG~g~~-~~fd~~~LRY~kIiIMTDADvDGaHIrtLLlTfFyr~m~~LIe~G~vyi  529 (635)
T COG0187         451 ILNVEKARLDKILKNEEIQTIITALGTGIG-KDFDLEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRYMPPLIENGHVYI  529 (635)
T ss_pred             chhhhhccHhhhhhhHHHHHHHHHhCCCCC-CCCChhhCccCcEEEEecCCCChHHHHHHHHHHHHHHhHHHHHcCcEEE
Confidence            999999999999999999999999999995 4599999999999999999999999999999999999999999999999


Q ss_pred             ecCCeEEEEeCCEEEEEeCHHHHHHHHHhCCCCCCccceeeeccCCCChhhHHhhhcCcCcceEEeeccccHHHHHHHHH
Q 010553          400 GVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFS  479 (507)
Q Consensus       400 ~~tPl~kv~~gk~~~~~y~~~e~~~~~~~~~~~~~~~i~ryKGLGe~~~~~l~et~~~p~~r~l~~v~~~d~~~~~~~f~  479 (507)
                      |+||||||++|+++.|+|||.|++..+.++...++|+||||||||||||+|||||||||++|+|.+|+++|+.+|+++|+
T Consensus       530 A~PPLYkv~~~k~~~Y~~~d~E~~~~~~~~~~~~~~~IqRyKGLGEMnp~QLwETTmdP~~R~L~~V~i~da~~ad~~f~  609 (635)
T COG0187         530 AQPPLYKVKKGKKTFYAYDDEELEKLLERLGKKKGYEIQRYKGLGEMNPDQLWETTMDPETRRLLQVTIEDADEADEIFS  609 (635)
T ss_pred             EcCceEEEEcCCceeEeCCHHHHHHHHHHhcccCCceeEeecccCCCCHHHHHHhccCccceeEEEEEcccHHHHHHHHH
Confidence            99999999999999999999999999988743258999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHhccccCCccCCCC
Q 010553          480 SLMGARVDTRKELIQNAANLVNLDHLDI  507 (507)
Q Consensus       480 ~lmg~~~~~Rk~~i~~~~~~~~~~~~d~  507 (507)
                      +|||+++++||+||++|+..+  .++||
T Consensus       610 ~LMGd~ve~Rr~fIe~na~~~--~~~di  635 (635)
T COG0187         610 TLMGDKVEPRRNFIEENALFV--ENLDI  635 (635)
T ss_pred             HHcCCCchHHHHHHHHHhhhh--hhccC
Confidence            999999999999999999964  56665

>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive Back     alignment and domain information
>PTZ00109 DNA gyrase subunit b; Provisional Back     alignment and domain information
>PRK05644 gyrB DNA gyrase subunit B; Validated Back     alignment and domain information
>PRK05559 DNA topoisomerase IV subunit B; Reviewed Back     alignment and domain information
>PRK14939 gyrB DNA gyrase subunit B; Provisional Back     alignment and domain information
>smart00433 TOP2c TopoisomeraseII Back     alignment and domain information
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial Back     alignment and domain information
>TIGR01059 gyrB DNA gyrase, B subunit Back     alignment and domain information
>PHA02569 39 DNA topoisomerase II large subunit; Provisional Back     alignment and domain information
>PTZ00108 DNA topoisomerase 2-like protein; Provisional Back     alignment and domain information
>PLN03128 DNA topoisomerase 2; Provisional Back     alignment and domain information
>PLN03237 DNA topoisomerase 2; Provisional Back     alignment and domain information
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics] Back     alignment and domain information
>cd03366 TOPRIM_TopoIIA_GyrB TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to the Escherichia coli GyrB subunit Back     alignment and domain information
>cd01030 TOPRIM_TopoIIA_like TOPRIM_TopoIIA_like: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II Back     alignment and domain information
>cd03365 TOPRIM_TopoIIA TOPRIM_TopoIIA: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II Back     alignment and domain information
>cd00822 TopoII_Trans_DNA_gyrase TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E Back     alignment and domain information
>PF00204 DNA_gyraseB: DNA gyrase B; InterPro: IPR013506 DNA topoisomerases regulate the number of topological links between two DNA strands (i Back     alignment and domain information
>cd03481 TopoIIA_Trans_ScTopoIIA TopoIIA_Trans_ScTopoIIA: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topo IIA Back     alignment and domain information
>PF00986 DNA_gyraseB_C: DNA gyrase B subunit, carboxyl terminus The Prosite motif does not match this Pfam entry Back     alignment and domain information
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase Back     alignment and domain information
>cd00329 TopoII_MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins Back     alignment and domain information
>PRK00095 mutL DNA mismatch repair protein; Reviewed Back     alignment and domain information
>PRK14939 gyrB DNA gyrase subunit B; Provisional Back     alignment and domain information
>PRK04184 DNA topoisomerase VI subunit B; Validated Back     alignment and domain information
>TIGR00585 mutl DNA mismatch repair protein MutL Back     alignment and domain information
>cd00188 TOPRIM Topoisomerase-primase domain Back     alignment and domain information
>TIGR01052 top6b DNA topoisomerase VI, B subunit Back     alignment and domain information
>cd00823 TopoIIB_Trans TopoIIB_Trans: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIB family of DNA topoisomerases similar to Sulfolobus shibatae topoisomerase VI (topoVI) Back     alignment and domain information
>PF09239 Topo-VIb_trans: Topoisomerase VI B subunit, transducer; InterPro: IPR015320 DNA topoisomerases regulate the number of topological links between two DNA strands (i Back     alignment and domain information
>PRK04017 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query507
2xcr_B 726 The 3.5a Crystal Structure Of The Catalytic Core (B 4e-75
2xco_A 726 The 3.1a Crystal Structure Of The Catalytic Core (B 4e-75
3foe_C268 Structural Insight Into The Quinolone-Dna Cleavage 2e-63
2xcs_B 692 The 2.1a Crystal Structure Of S. Aureus Gyrase Comp 3e-60
2xkk_A 767 Crystal Structure Of Moxifloxacin, Dna, And A. Baum 8e-54
2xkj_E 767 Crystal Structure Of Catalytic Core Of A. Baumannii 8e-54
3ig0_A242 Crystal Structure Of The Second Part Of The Mycobac 4e-50
2zjt_A247 Crystal Structure Of Dna Gyrase B' Domain Sheds Lig 5e-50
3nuh_B 420 A Domain Insertion In E. Coli Gyrb Adopts A Novel F 6e-48
3nuh_B420 A Domain Insertion In E. Coli Gyrb Adopts A Novel F 4e-11
1ei1_A391 Dimerization Of E. Coli Dna Gyrase B Provides A Str 3e-42
1kij_A390 Crystal Structure Of The 43k Atpase Domain Of Therm 1e-27
4fm9_A 763 Human Topoisomerase Ii Alpha Bound To Dna Length = 3e-22
3cwv_A369 Crystal Structure Of B-Subunit Of The Dna Gyrase Fr 6e-22
3qx3_A 803 Human Topoisomerase Iibeta In Complex With Dna And 2e-21
4hxz_A390 Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And To 4e-17
3lnu_A408 Crystal Structure Of Pare Subunit Length = 408 6e-16
1s16_A390 Crystal Structure Of E. Coli Topoisomerase Iv Pare 2e-14
3l4j_A 722 Topoisomerase Ii-Dna Cleavage Complex, Apo Length = 9e-14
1bgw_A 793 Topoisomerase Residues 410-1202 Length = 793 1e-13
2rgr_A 759 Topoisomerase Iia Bound To G-segment Dna Length = 7 1e-13
4gfh_A 1103 Topoisomerase Ii-Dna-Amppnp Complex Length = 1103 4e-13
4gfh_F 1099 Topoisomerase Ii-Dna-Amppnp Complex Length = 1099 9e-13
3ttz_A198 Crystal Structure Of A Topoisomerase Atpase Inhibit 7e-11
4gee_A215 Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And To 8e-10
3g75_A184 Crystal Structure Of Staphylococcus Aureus Gyrase B 3e-09
4hyp_A215 Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And To 4e-08
4duh_A220 Crystal Structure Of 24 Kda Domain Of E. Coli Dna G 6e-08
1aj6_A219 Novobiocin-resistant Mutant (r136h) Of The N-termin 6e-08
1kzn_A205 Crystal Structure Of E. Coli 24kda Domain In Comple 6e-08
3g7e_A203 Crystal Structure Of E. Coli Gyrase B Co-Complexed 1e-07
4em7_A226 Crystal Structure Of A Topoisomerase Atp Inhibitor 2e-06
4b6c_A196 Structure Of The M. Smegmatis Gyrb Atpase Domain In 3e-05
4hz5_A216 Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And To 1e-04
>pdb|2XCR|B Chain B, The 3.5a Crystal Structure Of The Catalytic Core (B'a' Region) Of Staphylococcus Aureus Dna Gyrase Complexed With Gsk299423 And Dna Length = 726 Back     alignment and structure 
Iteration: 1

 Score =  278 bits (712), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 137/237 (57%), Positives = 169/237 (71%), Gaps = 1/237 (0%)
Query: 271 SSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAA 330
           +SLPGKLADCSS +PEE EIF+VEGDSAGGS K GRD R QAILPLRGKILNVE+     
Sbjct: 4   ASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDR 63
Query: 331 MYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKT 390
           +  N EI+ +I A G G+ G DF     RYHKI+I+TDADVDGAHIRTLLLTFFYR+ + 
Sbjct: 64  ILNNNEIRQMITAFGTGIGG-DFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRP 122
Query: 391 LFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQ 450
           L + G +Y+  PPLYK+ +GKQ  Y Y+D EL K+KS       +SI R+KGLGEM   Q
Sbjct: 123 LIEAGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQ 182
Query: 451 LWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 507
           LWETT+NPE R L Q+ +EDA EA+  F  LMG  V+ R++ I++ A   NLD  ++
Sbjct: 183 LWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVYANLDFAEL 239
>pdb|2XCO|A Chain A, The 3.1a Crystal Structure Of The Catalytic Core (B'a' Region) Of Staphylococcus Aureus Dna Gyrase Length = 726 Back     alignment and structure
>pdb|3FOE|C Chain C, Structural Insight Into The Quinolone-Dna Cleavage Complex Of Type Iia Topoisomerases Length = 268 Back     alignment and structure
>pdb|2XCS|B Chain B, The 2.1a Crystal Structure Of S. Aureus Gyrase Complex With Gsk299423 And Dna Length = 692 Back     alignment and structure
>pdb|2XKK|A Chain A, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii Topo Iv (Pare-Parc Fusion Truncate) Length = 767 Back     alignment and structure
>pdb|2XKJ|E Chain E, Crystal Structure Of Catalytic Core Of A. Baumannii Topo Iv (Pare-Parc Fusion Truncate) Length = 767 Back     alignment and structure
>pdb|3IG0|A Chain A, Crystal Structure Of The Second Part Of The Mycobacterium Tuberculosis Dna Gyrase Reaction Core: The Toprim Domain At 2.1 A Resolution Length = 242 Back     alignment and structure
>pdb|2ZJT|A Chain A, Crystal Structure Of Dna Gyrase B' Domain Sheds Lights On The Mechanism For T-Segment Navigation Length = 247 Back     alignment and structure
>pdb|3NUH|B Chain B, A Domain Insertion In E. Coli Gyrb Adopts A Novel Fold That Plays A Critical Role In Gyrase Function Length = 420 Back     alignment and structure
>pdb|3NUH|B Chain B, A Domain Insertion In E. Coli Gyrb Adopts A Novel Fold That Plays A Critical Role In Gyrase Function Length = 420 Back     alignment and structure
>pdb|1EI1|A Chain A, Dimerization Of E. Coli Dna Gyrase B Provides A Structural Mechanism For Activating The Atpase Catalytic Center Length = 391 Back     alignment and structure
>pdb|1KIJ|A Chain A, Crystal Structure Of The 43k Atpase Domain Of Thermus Thermophilus Gyrase B In Complex With Novobiocin Length = 390 Back     alignment and structure
>pdb|4FM9|A Chain A, Human Topoisomerase Ii Alpha Bound To Dna Length = 763 Back     alignment and structure
>pdb|3CWV|A Chain A, Crystal Structure Of B-Subunit Of The Dna Gyrase From Myxococcus Xanthus Length = 369 Back     alignment and structure
>pdb|3QX3|A Chain A, Human Topoisomerase Iibeta In Complex With Dna And Etoposide Length = 803 Back     alignment and structure
>pdb|4HXZ|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And Topoisomerase Iv, Part I: Structure Guided Discovery And Optimization Of Dual Targeting Agents With Potent, Broad-spectrum Enzymatic Activity. Length = 390 Back     alignment and structure
>pdb|3LNU|A Chain A, Crystal Structure Of Pare Subunit Length = 408 Back     alignment and structure
>pdb|1S16|A Chain A, Crystal Structure Of E. Coli Topoisomerase Iv Pare 43kda Subunit Complexed With Adpnp Length = 390 Back     alignment and structure
>pdb|3L4J|A Chain A, Topoisomerase Ii-Dna Cleavage Complex, Apo Length = 722 Back     alignment and structure
>pdb|1BGW|A Chain A, Topoisomerase Residues 410-1202 Length = 793 Back     alignment and structure
>pdb|2RGR|A Chain A, Topoisomerase Iia Bound To G-segment Dna Length = 759 Back     alignment and structure
>pdb|3TTZ|A Chain A, Crystal Structure Of A Topoisomerase Atpase Inhibitor Length = 198 Back     alignment and structure
>pdb|4GEE|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And Topoisomerase Iv, Part I: Structure Guided Discovery And Optimization Of Dual Targeting Agents With Potent, Broad-spectrum Enzymatic Activity. Length = 215 Back     alignment and structure
>pdb|3G75|A Chain A, Crystal Structure Of Staphylococcus Aureus Gyrase B Co- Complexed With Inhibitor Length = 184 Back     alignment and structure
>pdb|4HYP|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And Topoisomerase Iv, Part I: Structure Guided Discovery And Optimization Of Dual Targeting Agents With Potent, Broad-spectrum Enzymatic Activity. Length = 215 Back     alignment and structure
>pdb|4DUH|A Chain A, Crystal Structure Of 24 Kda Domain Of E. Coli Dna Gyrase B In Complex With Small Molecule Inhibitor Length = 220 Back     alignment and structure
>pdb|1AJ6|A Chain A, Novobiocin-resistant Mutant (r136h) Of The N-terminal 24 Kda Fragment Of Dna Gyrase B Complexed With Novobiocin At 2.3 Angstroms Resolution Length = 219 Back     alignment and structure
>pdb|1KZN|A Chain A, Crystal Structure Of E. Coli 24kda Domain In Complex With Clorobiocin Length = 205 Back     alignment and structure
>pdb|3G7E|A Chain A, Crystal Structure Of E. Coli Gyrase B Co-Complexed With Inhibitor Length = 203 Back     alignment and structure
>pdb|4EM7|A Chain A, Crystal Structure Of A Topoisomerase Atp Inhibitor Length = 226 Back     alignment and structure
>pdb|4B6C|A Chain A, Structure Of The M. Smegmatis Gyrb Atpase Domain In Complex With An Aminopyrazinamide Length = 196 Back     alignment and structure
>pdb|4HZ5|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And Topoisomerase Iv, Part I: Structure Guided Discovery And Optimization Of Dual Targeting Agents With Potent, Broad-spectrum Enzymatic Activity Length = 216 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query507
3k9f_C268 DNA topoisomerase 4 subunit B; quinolone, topoisom 1e-153
3m4i_A242 DNA gyrase subunit B; GYRB, toprim, type II topois 1e-140
1kij_A390 DNA gyrase subunit B; topoisomerase, gyrase B-coum 1e-111
1ei1_A391 DNA gyrase B, GYRB; ATPase domain, dimer, isomeras 1e-107
3nuh_B 420 DNA gyrase subunit B; topoisomerase, supercoiling, 1e-103
3nuh_B420 DNA gyrase subunit B; topoisomerase, supercoiling, 4e-29
3lnu_A408 Topoisomerase IV subunit B; PARE, ATP-binding, nuc 3e-99
3cwv_A369 DNA gyrase, B subunit, truncated; structural genom 6e-99
1s16_A390 Topoisomerase IV subunit B; two-domain protein com 9e-99
2xkj_E 767 Topoisomerase IV; type IIA topoisomerase; 2.20A {A 6e-76
3qx3_A 803 DNA topoisomerase 2-beta; toprim domain, winged-he 2e-73
1pvg_A418 DNA topoisomerase II; GHKL ATPase domain; HET: DNA 3e-59
2xcs_B 692 DNA gyrase subunit B, DNA gyrase subunit A; isomer 2e-57
1zxm_A400 TOPO IIA ATPase, DNA topoisomerase II, alpha isozy 8e-54
3l4j_A 757 DNA topoisomerase 2; topoisomerase, protein-DNA co 3e-39
3ttz_A198 DNA gyrase subunit B; protein-inhibitor complex, A 4e-24
4duh_A220 DNA gyrase subunit B; structure-based drug design, 2e-20
3fv5_A201 DNA topoisomerase 4 subunit B; topoisomerase IV B 1e-19
4emv_A226 DNA topoisomerase IV, B subunit; protein-inhibitor 3e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-11
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C* Length = 268 Back     alignment and structure
 Score =  435 bits (1122), Expect = e-153
 Identities = 120/261 (45%), Positives = 163/261 (62%), Gaps = 7/261 (2%)

Query: 247 SALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGR 306
                  +     D    K+      L GKL    S  P ++E+++VEGDSAGGSAKQGR
Sbjct: 7   HHHHHHSSGHIDDDDKHMKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGR 66

Query: 307 DRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIIL 366
           DR+FQAILPLRGK++N  +   A + KNEEI  +I  +G GV G DF  E   Y KIII+
Sbjct: 67  DRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGV-GADFSIEDANYDKIIIM 125

Query: 367 TDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGK----QVQYCYDDAEL 422
           TDAD DGAHI+TLLLTFFYRY + L + G +Y+ +PPLYK+ +GK    +V Y + D EL
Sbjct: 126 TDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGEL 185

Query: 423 KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLM 482
           ++++  F      ++QR+KGLGEM   QLWETT+NPE R L ++ IED A A    + LM
Sbjct: 186 EELRKQFGKG--ATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLM 243

Query: 483 GARVDTRKELIQNAANLVNLD 503
           G +V+ R++ I++       +
Sbjct: 244 GDKVEPRRKWIEDNVKFTLEE 264
>3m4i_A DNA gyrase subunit B; GYRB, toprim, type II topoisomerase, tuberculosi quinolone binding site, DNA binding site, ATP-binding; HET: DNA; 1.95A {Mycobacterium tuberculosis} PDB: 3ig0_A* 2zjt_A* Length = 242 Back     alignment and structure
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 Length = 390 Back     alignment and structure
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Length = 391 Back     alignment and structure
>3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli} Length = 420 Back     alignment and structure
>3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli} Length = 420 Back     alignment and structure
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* Length = 408 Back     alignment and structure
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} Length = 369 Back     alignment and structure
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Length = 390 Back     alignment and structure
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A* Length = 767 Back     alignment and structure
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} Length = 803 Back     alignment and structure
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* Length = 418 Back     alignment and structure
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A* Length = 692 Back     alignment and structure
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* Length = 400 Back     alignment and structure
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A* Length = 757 Back     alignment and structure
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A* Length = 198 Back     alignment and structure
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* Length = 220 Back     alignment and structure
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* Length = 201 Back     alignment and structure
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* Length = 226 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query507
4gfh_A 1177 DNA topoisomerase 2; topoisomerase, protein-DNA co 100.0
3k9f_C268 DNA topoisomerase 4 subunit B; quinolone, topoisom 100.0
3nuh_B420 DNA gyrase subunit B; topoisomerase, supercoiling, 100.0
3m4i_A242 DNA gyrase subunit B; GYRB, toprim, type II topois 100.0
2xkj_E 767 Topoisomerase IV; type IIA topoisomerase; 2.20A {A 100.0
3l4j_A 757 DNA topoisomerase 2; topoisomerase, protein-DNA co 100.0
3qx3_A 803 DNA topoisomerase 2-beta; toprim domain, winged-he 100.0
2xcs_B 692 DNA gyrase subunit B, DNA gyrase subunit A; isomer 100.0
3lnu_A408 Topoisomerase IV subunit B; PARE, ATP-binding, nuc 100.0
1ei1_A391 DNA gyrase B, GYRB; ATPase domain, dimer, isomeras 100.0
1s16_A390 Topoisomerase IV subunit B; two-domain protein com 100.0
1kij_A390 DNA gyrase subunit B; topoisomerase, gyrase B-coum 100.0
3cwv_A369 DNA gyrase, B subunit, truncated; structural genom 100.0
1zxm_A400 TOPO IIA ATPase, DNA topoisomerase II, alpha isozy 100.0
1pvg_A418 DNA topoisomerase II; GHKL ATPase domain; HET: DNA 100.0
2q2e_B621 Type 2 DNA topoisomerase 6 subunit B; DNA-binding, 99.78
3ttz_A198 DNA gyrase subunit B; protein-inhibitor complex, A 99.71
4duh_A220 DNA gyrase subunit B; structure-based drug design, 99.67
4emv_A226 DNA topoisomerase IV, B subunit; protein-inhibitor 99.66
3fv5_A201 DNA topoisomerase 4 subunit B; topoisomerase IV B 99.38
2zbk_B530 Type 2 DNA topoisomerase 6 subunit B; DNA binding 98.5
1b63_A333 MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A 98.26
3na3_A348 DNA mismatch repair protein MLH1; MUTL protein hom 97.45
3h4l_A367 DNA mismatch repair protein PMS1; ATP binding, DNA 97.25
1h7s_A365 PMS1 protein homolog 2; DNA repair, GHL ATPase, mi 96.51
1mu5_A471 Type II DNA topoisomerase VI subunit B; GHKL ATPas 96.4
2zbk_B530 Type 2 DNA topoisomerase 6 subunit B; DNA binding 85.03
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=3.5e-125  Score=1090.66  Aligned_cols=474  Identities=23%  Similarity=0.321  Sum_probs=372.5

Q ss_pred             CEEEEEecCCCCCCcceeeecCCCCCCCCCeEEEEEeCccccccccCCCHHHHHHHHHHHhccCC---CcEEEEeecCCC
Q 010553            1 MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP---KLTIALRKEDSD   77 (507)
Q Consensus         1 k~y~q~F~~G~~~~~l~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~fd~~~l~~Rl~elA~Ln~---Gl~I~l~der~~   77 (507)
                      ++|+|+|++|+++.+++.+.  ..+.+++||+|+||||++||++ ..|+++++..|++++|+||+   ++.+.+++++. 
T Consensus       167 k~y~q~f~~g~~~~~~~~i~--~~~~~~tGT~V~F~PD~~iF~~-~~~~~d~l~~~~r~~~~l~~~~~~~~~~~~g~~~-  242 (1177)
T 4gfh_A          167 QKYVQKWENNMSICHPPKIT--SYKKGPSYTKVTFKPDLTRFGM-KELDNDILGVMRRRVYDINGSVRDINVYLNGKSL-  242 (1177)
T ss_dssp             EEEEEEEETTTTEECCCEEE--ECCSSCCCEEEEEEECHHHHTC-SSCCHHHHHHHHHHHHHHHHHSSSCEEEESSCBC-
T ss_pred             EEEEEEEECCcccCCCCeee--cCCCCCCceEEEEEeCHHhcCC-cEeCHHHHHHHHHHHHHhcCCCceEEEEecCCee-
Confidence            47999999999998887762  1334579999999999999985 47999999999999998874   57788888764 


Q ss_pred             CCCCcceeEecCCCHHHHHHHHhcCCCCCC--------ceeEEEEeccceEEEEeeeecCCCCCceeeeeeCceecCCCC
Q 010553           78 PEKNQYNEYFFAGGLEEYVQWLNTDKKPLH--------DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGG  149 (507)
Q Consensus        78 ~~~~~~~~f~~~~Gl~~yv~~l~~~~~~~~--------~~i~~~~~~~~~~veval~~s~~~~~~~~~SFvN~I~T~~GG  149 (507)
                            +.++|++|+.+|++.++..+...+        ++..+..+..+.+||||++|+ +++ .+++||||||+|++||
T Consensus       243 ------~~~~f~~gi~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~eva~~~~-d~~-~~~~SFvN~I~T~~GG  314 (1177)
T 4gfh_A          243 ------KIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINNRWEVAFAVS-DIS-FQQISFVNSIATTMGG  314 (1177)
T ss_dssp             ------CCCSHHHHHGGGTTTC-----------------CCSCEEEEEETTEEEEEEEC-SSS-CEEEEEESSCEETTEE
T ss_pred             ------EEeeccchhhhhhhhhccceeccccccccccCCCceEEEEeccceEEEeeccc-CCc-ceeeeeeeeeecCCCc
Confidence                  357889999999988766543322        112223344456799999998 444 3467999999999999


Q ss_pred             cchhhHHHHHHHHHHHHHHhccCCCCcCCCCCHHhHhcccEEEEEEeecCCCCCCccccccCChhhHhhhhHhh-HHHHH
Q 010553          150 THIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSV-QEYLT  228 (507)
Q Consensus       150 THv~g~~~al~~~in~~~kk~~~~k~~~~~i~~~diregL~~vvsv~i~nP~FegQTK~kL~n~~v~~~v~~~v-~~~l~  228 (507)
                      |||+||++||+++||+|+++.+.     .+++++|||+||++||||+|+||+|+||||++|+|+.....+...+ .+.+.
T Consensus       315 THv~gfr~altr~in~~~~k~~~-----~~~~~~DIregl~avISvki~~PqFegQTK~kL~s~~~~~~~~~~~~~~~~~  389 (1177)
T 4gfh_A          315 THVNYITDQIVKKISEILKKKKK-----KSVKSFQIKNNMFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPLEYIN  389 (1177)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSS-----SCCCHHHHHTTEEEEEEECCSSCCBSSTTCCEECCCGGGSSSCCCCCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhhhhcc-----ccCCHHHHhCCceEEEEeeeccCccccchhhhhcCchhcceeeccchHHHhh
Confidence            99999999999999999876543     4689999999999999999999999999999999986554443322 23333


Q ss_pred             HHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCC---CCCCCCceEEEeecCCCCCccccc
Q 010553          229 EYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS---STTPEESEIFIVEGDSAGGSAKQG  305 (507)
Q Consensus       229 ~~l~~n~~~~~~I~~~~~~~~k~r~aakkar~~~~~k~~~~~~~lpgKL~Dc~---~~~~~~~eL~lvEGDSA~gsak~g  305 (507)
                      .+++  ..    |+++++..+++++++++++...++|+.+  ..+ +||+||+   +++|++|||||||||||||||++|
T Consensus       390 ~~~~--~~----i~~~~~~~a~~~~~~~~~k~~~~~k~~~--~~~-~KL~d~~~~~skd~~~~ELfiVEGDSAgGsAk~G  460 (1177)
T 4gfh_A          390 KIMK--TD----LATRMFEIADANEENALKKSDGTRKSRI--TNY-PKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAG  460 (1177)
T ss_dssp             HHTT--SH----HHHHHHHHHTTCC------------CCC--CSC-TTCBCCTTTTTTTTTTCEEEEEEHHHHHHHHHHH
T ss_pred             hhhh--HH----HHHHHHHHHHHHHHHHHHhhhhhcchhh--ccc-cccccccccCCCCccceEEEEecCCchhhhHhhc
Confidence            3332  23    4444444444444444444444444432  223 4999987   789999999999999999999999


Q ss_pred             C---CCCceEeeccCCccccccccCHHHHhhCcchHHHHHHhcCCccCCcCcccccccceEEEeecCCCCChhhHHHHHH
Q 010553          306 R---DRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLT  382 (507)
Q Consensus       306 R---dr~~qailPLrGKiLNv~ka~~~ki~~N~Ei~~li~alG~~~~~~~~~~~~LRY~kiiImtDaD~DG~HI~~Lllt  382 (507)
                      |   +|+|||||||||||||||+|+.++|++|+||++|++|||||++.+.+|+++||||||||||||||||+||||||||
T Consensus       461 rak~~Rd~QAIlPLRGKiLNv~ka~~~kil~N~EI~~ii~alG~g~g~~~~d~~~LRY~KIiIMTDADvDGsHIrtLLlt  540 (1177)
T 4gfh_A          461 LAVVGRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKGLIIN  540 (1177)
T ss_dssp             HHHHCSTTEEEEEECSSCCCCTTCCHHHHHHCHHHHHHHHHTTCCCSSCCCCGGGSSCSEEEEECCSSHHHHHHHHHHHH
T ss_pred             ccccCcccEEecccCceechhhhhHHHHHhhcHHHHHHHHHhCCCcCcccCccccCCCCeEEEeecCCCCcchHHHHHHH
Confidence            8   8899999999999999999999999999999999999999995544599999999999999999999999999999


Q ss_pred             HHHHHHHHHhh-cCcEEEecCCeEEEEeC---CEEEEEeCHHHHHHHHHhCCCCCCccceeeeccCCCChhhHHhhhcCc
Q 010553          383 FFYRYQKTLFD-EGCIYVGVPPLYKVERG---KQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNP  458 (507)
Q Consensus       383 ff~~~~p~Li~-~G~v~~~~tPl~kv~~g---k~~~~~y~~~e~~~~~~~~~~~~~~~i~ryKGLGe~~~~~l~et~~~p  458 (507)
                      |||||||+||+ +||||+|+||||||+.|   |+.+|||+++|+++|+++.....+|+||||||||||||+|||||||||
T Consensus       541 fF~r~~p~Lie~~G~vyia~pPLykv~~~k~~k~~~~~y~~~e~e~~~~~~~~~~~~~iqryKGLGEm~~~ql~Ett~~~  620 (1177)
T 4gfh_A          541 FLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHKFTWKQKYYKGLGTSLAQEVREYFSNL  620 (1177)
T ss_dssp             HHHHHSTTSTTSTTCEEEECCCSEEEEECSSSCCEEEESSHHHHHHHHHHTGGGSCEEEEEC----CCCHHHHHHHHHTC
T ss_pred             HHHHhChhhEeeCCEEEEEecceEEEEEecCCcceEEEechHHHHHHHHHhcCCCCcceeecccCCcccHHHHHHHHhCc
Confidence            99999999999 99999999999999865   457899999999999988765568999999999999999999988887


Q ss_pred             Ccce--EEeeccccHHHHHHHHHHhcCCCchHHHHHHHhccccCCcc
Q 010553          459 EQRM--LKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD  503 (507)
Q Consensus       459 ~~r~--l~~v~~~d~~~~~~~f~~lmg~~~~~Rk~~i~~~~~~~~~~  503 (507)
                      ++|+  +.+++++|++.+   ..+|||+++++||+||++|++...+|
T Consensus       621 d~~~~~~~~v~~~d~~~~---d~~f~~~~~~~RkewI~~~~~~~~~d  664 (1177)
T 4gfh_A          621 DRHLKIFHSLQGNDKDYI---DLAFSKKKADDRKEWLRQYEPGTVLD  664 (1177)
T ss_dssp             TTTEEEEECCCTTTHHHH---HHHHCGGGHHHHHHHHHHCCTTCCCC
T ss_pred             ccceEEEEEcccccHHHH---HHHHhccchhhHHHHHHhcCcccccc
Confidence            7655  445666666544   45567999999999999999876544
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C* Back     alignment and structure
>3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli} Back     alignment and structure
>3m4i_A DNA gyrase subunit B; GYRB, toprim, type II topoisomerase, tuberculosi quinolone binding site, DNA binding site, ATP-binding; HET: DNA; 1.95A {Mycobacterium tuberculosis} PDB: 3ig0_A* 2zjt_A* Back     alignment and structure
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A* Back     alignment and structure
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A* Back     alignment and structure
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A* Back     alignment and structure
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A* Back     alignment and structure
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* Back     alignment and structure
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} Back     alignment and structure
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* Back     alignment and structure
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* Back     alignment and structure
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Back     alignment and structure
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A* Back     alignment and structure
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* Back     alignment and structure
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* Back     alignment and structure
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* Back     alignment and structure
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Back     alignment and structure
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Back     alignment and structure
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Back     alignment and structure
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Back     alignment and structure
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Back     alignment and structure
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 507
d1bjta_ 760 e.11.1.1 (A:) DNA topoisomerase II, C-terminal fra 4e-73
d1ei1a1172 d.14.1.3 (A:221-392) DNA gyrase B {Escherichia col 1e-42
d1kija1172 d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermop 8e-42
d1s16a1167 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B 5e-41
d1pvga1161 d.14.1.3 (A:246-406) DNA topoisomerase II {Baker's 6e-20
d1s14a_168 d.122.1.2 (A:) Topoisomerase IV subunit B {Escheri 7e-16
d1ei1a2219 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli 1e-14
d1kija2212 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermoph 2e-10
d1pvga2239 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's 2e-09
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 760 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Type II DNA topoisomerase
superfamily: Type II DNA topoisomerase
family: Type II DNA topoisomerase
domain: DNA topoisomerase II, C-terminal fragment (residues 410-1202)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  244 bits (623), Expect = 4e-73
 Identities = 63/241 (26%), Positives = 111/241 (46%), Gaps = 17/241 (7%)

Query: 269 RSSSLPG--KLADCS---STTPEESEIFIVEGDSA-----GGSAKQGRDRRFQAILPLRG 318
           R S +    KL D +   +    +  + + EGDSA      G A  GRD  +    PLRG
Sbjct: 1   RKSRITNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRD--YYGCYPLRG 58

Query: 319 KILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRT 378
           K+LNV       + KN EIQ + + +GL  + +    ++LRY  ++I+TD D DG+HI+ 
Sbjct: 59  KMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKG 118

Query: 379 LLLTFFYRYQKTLFD-EGCIYVGVPPLYKVERGKQVQY---CYDDAELKKVKSSFPSNAL 434
           L++ F       L D +G +   + P+ KV   K  +     Y+  + +K +        
Sbjct: 119 LIINFLESSFLGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHKFT 178

Query: 435 YSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ 494
           +  + +KGLG  +  ++ E   N ++ + K        + + +  +    + D RKE ++
Sbjct: 179 WKQKYYKGLGTSLAQEVREYFSNLDRHL-KIFHSLQGNDKDYIDLAFSKKKADDRKEWLR 237

Query: 495 N 495
            
Sbjct: 238 Q 238
>d1ei1a1 d.14.1.3 (A:221-392) DNA gyrase B {Escherichia coli [TaxId: 562]} Length = 172 Back     information, alignment and structure
>d1kija1 d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Length = 172 Back     information, alignment and structure
>d1s16a1 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Length = 167 Back     information, alignment and structure
>d1pvga1 d.14.1.3 (A:246-406) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 161 Back     information, alignment and structure
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Length = 168 Back     information, alignment and structure
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} Length = 219 Back     information, alignment and structure
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Length = 212 Back     information, alignment and structure
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 239 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query507
d1bjta_ 760 DNA topoisomerase II, C-terminal fragment (residue 100.0
d1kija1172 DNA gyrase B {Thermus thermophilus [TaxId: 274]} 100.0
d1ei1a1172 DNA gyrase B {Escherichia coli [TaxId: 562]} 100.0
d1s16a1167 Topoisomerase IV subunit B {Escherichia coli [TaxI 100.0
d1pvga1161 DNA topoisomerase II {Baker's yeast (Saccharomyces 99.95
d1s14a_168 Topoisomerase IV subunit B {Escherichia coli [TaxI 99.78
d1ei1a2219 DNA gyrase B {Escherichia coli [TaxId: 562]} 99.72
d1kija2212 DNA gyrase B {Thermus thermophilus [TaxId: 274]} 99.66
d1pvga2239 DNA topoisomerase II {Baker's yeast (Saccharomyces 99.26
d2hkja2164 Topoisomerase VI-B subunit {Archaeon Sulfolobus sh 92.81
d1h7sa2203 DNA mismatch repair protein PMS2 {Human (Homo sapi 91.53
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Type II DNA topoisomerase
superfamily: Type II DNA topoisomerase
family: Type II DNA topoisomerase
domain: DNA topoisomerase II, C-terminal fragment (residues 410-1202)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-72  Score=629.48  Aligned_cols=225  Identities=27%  Similarity=0.432  Sum_probs=176.0

Q ss_pred             CCCCCCCCCC---CCCCCCceEEEeecCCC-----CCcccccCCCCceEeeccCCccccccccCHHHHhhCcchHHHHHH
Q 010553          272 SLPGKLADCS---STTPEESEIFIVEGDSA-----GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRA  343 (507)
Q Consensus       272 ~lpgKL~Dc~---~~~~~~~eL~lvEGDSA-----~gsak~gRdr~~qailPLrGKiLNv~ka~~~ki~~N~Ei~~li~a  343 (507)
                      ++| ||+||+   ++++++|||||||||||     +|+|++|||  ||||||||||||||++++.++|++|+||++|++|
T Consensus         7 ~~p-kl~d~~~~g~~~~~~~~l~~~EGdSA~~~~~~g~~~~~rd--~~~v~plrGK~lN~~~~~~~~~~~n~ei~~l~~~   83 (760)
T d1bjta_           7 NYP-KLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRD--YYGCYPLRGKMLNVREASADQILKNAEIQAIKKI   83 (760)
T ss_dssp             SCT-TCBCCTTTTSGGGGGCEEEEEESHHHHHHHHHHHHHHCSS--SEEEEEEECCCCSCCC------CCHHHHHHHHHH
T ss_pred             CCC-CcccccccCCCChhhcEEEEecccCccccccCcccccccc--cEEEeecCCcccccccCCHHHHhhCHHHHHHHHH
Confidence            567 999998   68999999999999999     788888888  7999999999999999999999999999999999


Q ss_pred             hcCCccCCcCcccccccceEEEeecCCCCChhhHHHHHHHHHHHHHHHhh-cCcEEEecCCeEEEEe---CCEEEEEeCH
Q 010553          344 LGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFD-EGCIYVGVPPLYKVER---GKQVQYCYDD  419 (507)
Q Consensus       344 lG~~~~~~~~~~~~LRY~kiiImtDaD~DG~HI~~Llltff~~~~p~Li~-~G~v~~~~tPl~kv~~---gk~~~~~y~~  419 (507)
                      |||+++..+.|+++||||||||||||||||+||+||||||||+|||+||+ +||||+|+||||||+.   ++++.+||++
T Consensus        84 lG~~~~~~~~~~~~lrY~~i~imtDaD~DG~hI~~Lll~ff~~~~p~l~~~~g~i~~~~~Pl~~~~~~~~~~~~~~~y~~  163 (760)
T d1bjta_          84 MGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSFLGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNM  163 (760)
T ss_dssp             HTCCSSBCCSCSSSSSCSEEEEEEC-----CCHHHHHHHHHHHHBTTTTTSTTSEEECCCCSEEEEECSSCCEEEEESSH
T ss_pred             HCCCCCCCCCchhhCCCCcEEEEECCCCCchHHHHHHHHHHHHhhHHHhccCCEEEEEeCCcEEEEecCCCcceeeecch
Confidence            99999655558999999999999999999999999999999999999998 8999999999999974   4567899999


Q ss_pred             HHHHHHHHhCCCCCCccceeeeccCCCChhhHHhhhcCcCcceEEeeccccHHHHHHHHHHhcCCCchHHHHHHHhcccc
Q 010553          420 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANL  499 (507)
Q Consensus       420 ~e~~~~~~~~~~~~~~~i~ryKGLGe~~~~~l~et~~~p~~r~l~~v~~~d~~~~~~~f~~lmg~~~~~Rk~~i~~~~~~  499 (507)
                      +|+++|..+....++|+||||||||||+|+|+|||||||++|++.++++++.+ ++.++.+|+|+.+++||+||.++.+.
T Consensus       164 ~e~~~~~~~~~~~~~~~i~~yKGLG~~~~~e~~e~~~~~~~~~~~~~~~~~~~-~~~~~~~F~k~~~d~RKewl~~~~~~  242 (760)
T d1bjta_         164 PDYEKWREEESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRHLKIFHSLQGND-KDYIDLAFSKKKADDRKEWLRQYEPG  242 (760)
T ss_dssp             HHHHHHHHHTTTTSCEEECCCCCCSTTHHHHHHHHHHHHHHHHHHHHHCC----------------------CCCCSCC-
T ss_pred             hhHHHHHHHhcCccccchhcccccccccchhhHHHhcccccccceeEeccchh-HHHHHHHHhhcccchHHHHHhhcccc
Confidence            99999998866556899999999999999999999999999887766665542 44566667799999999999999875


Q ss_pred             C
Q 010553          500 V  500 (507)
Q Consensus       500 ~  500 (507)
                      .
T Consensus       243 ~  243 (760)
T d1bjta_         243 T  243 (760)
T ss_dssp             -
T ss_pred             c
Confidence            4
>d1kija1 d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ei1a1 d.14.1.3 (A:221-392) DNA gyrase B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1s16a1 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pvga1 d.14.1.3 (A:246-406) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2hkja2 d.14.1.3 (A:307-470) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Back     information, alignment and structure
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure