Citrus Sinensis ID: 010561

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------
MDSSNTDNNNNVHEPMLQSNGSEVEPVSSELEEALSDDSLSFFQRIKKATWIELKNLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLSERCKKTWTGFSLQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRTDWNKEVEKARNRMDEWGDKTELLLKE
ccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHEEEHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccc
ccccccccccccccccccccccccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHEcccccHcccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccHHHHcHHHccccHHHHHHHEEHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccc
mdssntdnnnnvhepmlqsngsevepvsSELEEALSDDSLSFFQRIKKATWIELKNLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLgmgsatetlcgqaygaqkyDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFlqaqsiispsaYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLSERCKKTWTGFSLQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGnelgaahpksckFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGipigcllgfkfnlgtkgiwsgmigGTLIQTIILVYVTLRTDWNKEVEKARNRMDEWGDKTELLLKE
mdssntdnnnnvhepmlqsngseVEPVSSELEEALSDDSLSFFQRIKKATWIELKNLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLSERCKKTWTGFSLQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRTDWNKEVEKarnrmdewgdktelllke
MDSSNTDNNNNVHEPMLQSNGsevepvsseleealsddslsFFQRIKKATWIELKNLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGEssaiasaaaiFVFGLIPQIFAYAVNFPIQKFLQaqsiispsayisaaTLVVHVLLSWVAIFKlgwgllgaslvlslswwIIVAAQFVYILLSERCKKTWTGFSLQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFsvivvtsislalsvilailvlilRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRTDWNKEVEKARNRMDEWGDKTELLLKE
***************************************LSFFQRIKKATWIELKNLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLSERCKKTWTGFSLQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRTDWNKEV********************
******************************************FQRIKKATWIELKNLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLSERCKKTWTGFSLQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRTDWNKEVE*******************
*********NNVHEPML*****************LSDDSLSFFQRIKKATWIELKNLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLSERCKKTWTGFSLQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRTDWNKEVEKARNRMDEWGDKTELLLKE
**************************************SLSFFQRIKKATWIELKNLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLSERCKKTWTGFSLQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRTDWNKEVEKARNRMDEWG*KT******
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MDSSNTDNNNNVHEPMLQSNGSEVEPVSSELEEALSDDSLSFFQRIKKATWIELKNLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLSERCKKTWTGFSLQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLxxxxxxxxxxxxxxxxxxxxxTELLLKE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query507 2.2.26 [Sep-21-2011]
Q9LYT3507 Protein TRANSPARENT TESTA no no 0.960 0.960 0.484 1e-130
Q9SIA3476 MATE efflux family protei no no 0.873 0.930 0.378 1e-82
Q9SIA5476 MATE efflux family protei no no 0.863 0.920 0.377 8e-81
Q8GXM8476 MATE efflux family protei no no 0.873 0.930 0.358 8e-80
Q9SIA4476 MATE efflux family protei no no 0.873 0.930 0.371 4e-78
Q9LUH3469 MATE efflux family protei no no 0.905 0.978 0.352 6e-77
Q9LUH2477 MATE efflux family protei no no 0.905 0.962 0.355 1e-76
Q8RWF5483 MATE efflux family protei no no 0.869 0.913 0.349 2e-71
Q9SIA1477 MATE efflux family protei no no 0.905 0.962 0.343 2e-69
Q5RFD2570 Multidrug and toxin extru yes no 0.919 0.817 0.331 1e-58
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1 Back     alignment and function desciption
 Score =  466 bits (1199), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 239/493 (48%), Positives = 338/493 (68%), Gaps = 6/493 (1%)

Query: 8   NNNNVHEPML---QSNGSEVEPVSSELEEALSDDSLSFFQR--IKKATWIELKNLFRLAA 62
           ++   +EP+L    S+    E  S E+EE L     +   R  +K A W E K L+ L+ 
Sbjct: 2   SSTETYEPLLTRLHSDSQITERSSPEIEEFLRRRGSTVTPRWWLKLAVW-ESKLLWTLSG 60

Query: 63  PAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQA 122
            +I+V +LN +++  T +F GHLG+L+LA  S+   GIQ  AYG+MLGM SA +T+CGQA
Sbjct: 61  ASIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQA 120

Query: 123 YGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIP 182
           YGA++Y  +G+  QR+ V+  A  + L  +Y +S  IL  +G+S AIA    IF  G+IP
Sbjct: 121 YGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIP 180

Query: 183 QIFAYAVNFPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLS 242
           QI+A+A+  P+Q+FLQAQ+I++P AY+S    ++H LL+W+    L +GLLGA+L+LS S
Sbjct: 181 QIYAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSFS 240

Query: 243 WWIIVAAQFVYILLSERCKKTWTGFSLQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLI 302
           WW++VA   +YIL+S  CK+TWTGFS +AF G+W + KL+ ASAVMLCLEIWY Q +V+I
Sbjct: 241 WWLLVAVNGMYILMSPNCKETWTGFSTRAFRGIWPYFKLTVASAVMLCLEIWYNQGLVII 300

Query: 303 AGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTS 362
           +GLL N  I LD++SICM    W     +G +AA SVRV NELGA +P+    SV+VV  
Sbjct: 301 SGLLSNPTISLDAISICMYYLNWDMQFMLGLSAAISVRVSNELGAGNPRVAMLSVVVVNI 360

Query: 363 ISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVG 422
            ++ +S +L ++VL+ R  +S AFT  + V  +V++L P LA+S+ LNGIQP+LSGVA+G
Sbjct: 361 TTVLISSVLCVIVLVFRVGLSKAFTSDAEVIAAVSDLFPLLAVSIFLNGIQPILSGVAIG 420

Query: 423 CGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRTD 482
            GWQA VAYVN+  YY+IG+PIGC+LGFK +LG  GIW GMI G ++QT+ L+ +TL+T+
Sbjct: 421 SGWQAVVAYVNLVTYYVIGLPIGCVLGFKTSLGVAGIWWGMIAGVILQTLTLIVLTLKTN 480

Query: 483 WNKEVEKARNRMD 495
           W  EVE A  R+ 
Sbjct: 481 WTSEVENAAQRVK 493
May be involved in vacuolar transport of flavonoids.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function description
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function description
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1 Back     alignment and function description
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function description
>sp|Q5RFD2|S47A1_PONAB Multidrug and toxin extrusion protein 1 OS=Pongo abelii GN=SLC47A1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query507
255554911510 multidrug resistance pump, putative [Ric 0.988 0.982 0.757 0.0
224115726501 predicted protein [Populus trichocarpa] 0.958 0.970 0.736 0.0
359483371504 PREDICTED: protein TRANSPARENT TESTA 12 0.921 0.926 0.790 0.0
359483373509 PREDICTED: protein TRANSPARENT TESTA 12 0.986 0.982 0.718 0.0
255554909497 multidrug resistance pump, putative [Ric 0.974 0.993 0.742 0.0
359483444508 PREDICTED: protein TRANSPARENT TESTA 12- 0.988 0.986 0.708 0.0
297830862506 mate efflux family protein [Arabidopsis 0.994 0.996 0.701 0.0
255554915503 multidrug resistance pump, putative [Ric 0.972 0.980 0.681 0.0
224115716508 predicted protein [Populus trichocarpa] 0.982 0.980 0.665 0.0
356544808517 PREDICTED: LOW QUALITY PROTEIN: protein 0.996 0.976 0.680 0.0
>gi|255554911|ref|XP_002518493.1| multidrug resistance pump, putative [Ricinus communis] gi|223542338|gb|EEF43880.1| multidrug resistance pump, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  788 bits (2034), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/508 (75%), Positives = 437/508 (86%), Gaps = 7/508 (1%)

Query: 7   DNNNNVH-------EPMLQSNGSEVEPVSSELEEALSDDSLSFFQRIKKATWIELKNLFR 59
           DN N++H       +P L    S V PVSSELEE LS+ +LS FQR+KKA  +ELK LFR
Sbjct: 3   DNENSIHNLENEERQPELLRKQSSVSPVSSELEEILSNTNLSCFQRLKKAALLELKILFR 62

Query: 60  LAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLC 119
           LA PA+ VY+LNN+V+MSTQIFCGHLGNL+LAA SLGNTGIQVFAYGLMLGMGSA ETLC
Sbjct: 63  LAGPAVFVYLLNNVVSMSTQIFCGHLGNLQLAAASLGNTGIQVFAYGLMLGMGSAVETLC 122

Query: 120 GQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFG 179
           GQAYGA KY+MLGVYLQRSA++L ATGIPL +IY FSKQILLLLGES  IAS AAIFV+G
Sbjct: 123 GQAYGAHKYEMLGVYLQRSAILLAATGIPLTIIYSFSKQILLLLGESKEIASEAAIFVYG 182

Query: 180 LIPQIFAYAVNFPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVL 239
           LIPQIFAYAVNFPIQKFLQAQSI+ PSAYISA TL VHVLLSW+AI+KLGWGLLGASLVL
Sbjct: 183 LIPQIFAYAVNFPIQKFLQAQSIVFPSAYISAGTLAVHVLLSWLAIYKLGWGLLGASLVL 242

Query: 240 SLSWWIIVAAQFVYILLSERCKKTWTGFSLQAFSGLWDFLKLSTASAVMLCLEIWYYQII 299
           S SWWIIVAAQFVYI+ S RCK+TWTGF+  AFSGLWDFLKLSTASAVMLCLEIWYYQI+
Sbjct: 243 SFSWWIIVAAQFVYIVSSPRCKRTWTGFTWNAFSGLWDFLKLSTASAVMLCLEIWYYQIL 302

Query: 300 VLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFSVIV 359
           VLIAGLL NAEI LDSLSICM I GWV+M+AVGFNAAASVRV NELGA HPKS  F+V+V
Sbjct: 303 VLIAGLLKNAEIALDSLSICMAIVGWVYMVAVGFNAAASVRVSNELGAGHPKSAAFAVVV 362

Query: 360 VTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGV 419
           VT  S  +++IL I+ L+LRN +SY FT G+TVA +VAELSPFLALS++L+GIQPVLSGV
Sbjct: 363 VTLSSFLIALILGIVALVLRNYLSYIFTSGTTVAKAVAELSPFLALSIVLSGIQPVLSGV 422

Query: 420 AVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTL 479
           AVGCGWQAFVAYVNVGCYY +GIP+GC+LGF F+LG KGIWSGM+ GT++QT+IL++ T 
Sbjct: 423 AVGCGWQAFVAYVNVGCYYFVGIPLGCVLGFTFDLGDKGIWSGMLAGTVLQTLILLWFTY 482

Query: 480 RTDWNKEVEKARNRMDEWGDKTELLLKE 507
           RTDW KEVEKA+NR+  W + TE  LKE
Sbjct: 483 RTDWKKEVEKAQNRLKRWDNITEPFLKE 510

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224115726|ref|XP_002317107.1| predicted protein [Populus trichocarpa] gi|222860172|gb|EEE97719.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359483371|ref|XP_002274027.2| PREDICTED: protein TRANSPARENT TESTA 12 isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359483373|ref|XP_002273739.2| PREDICTED: protein TRANSPARENT TESTA 12 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255554909|ref|XP_002518492.1| multidrug resistance pump, putative [Ricinus communis] gi|223542337|gb|EEF43879.1| multidrug resistance pump, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359483444|ref|XP_002273901.2| PREDICTED: protein TRANSPARENT TESTA 12-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297830862|ref|XP_002883313.1| mate efflux family protein [Arabidopsis lyrata subsp. lyrata] gi|297329153|gb|EFH59572.1| mate efflux family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255554915|ref|XP_002518495.1| multidrug resistance pump, putative [Ricinus communis] gi|223542340|gb|EEF43882.1| multidrug resistance pump, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224115716|ref|XP_002317104.1| predicted protein [Populus trichocarpa] gi|222860169|gb|EEE97716.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356544808|ref|XP_003540839.1| PREDICTED: LOW QUALITY PROTEIN: protein TRANSPARENT TESTA 12-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query507
TAIR|locus:2089955506 AT3G21690 "AT3G21690" [Arabido 0.994 0.996 0.597 1.4e-158
TAIR|locus:2027322503 AT1G11670 "AT1G11670" [Arabido 0.992 1.0 0.542 6.4e-147
TAIR|locus:2036848501 AT1G61890 "AT1G61890" [Arabido 0.986 0.998 0.540 1.7e-146
TAIR|locus:2144421498 AT5G38030 "AT5G38030" [Arabido 0.879 0.895 0.476 4.3e-109
TAIR|locus:2010401522 RSH2 "AT1G12950" [Arabidopsis 0.879 0.854 0.467 3.5e-107
TAIR|locus:2088822500 AT3G26590 "AT3G26590" [Arabido 0.879 0.892 0.472 3.5e-107
TAIR|locus:2015368484 AT1G47530 "AT1G47530" [Arabido 0.877 0.919 0.452 4.2e-102
TAIR|locus:2028115515 AT1G23300 "AT1G23300" [Arabido 0.883 0.869 0.440 9.1e-100
TAIR|locus:2077725507 TT12 "AT3G59030" [Arabidopsis 0.883 0.883 0.436 1.9e-99
TAIR|locus:2168210486 AT5G65380 "AT5G65380" [Arabido 0.893 0.932 0.428 1.3e-98
TAIR|locus:2089955 AT3G21690 "AT3G21690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1545 (548.9 bits), Expect = 1.4e-158, P = 1.4e-158
 Identities = 304/509 (59%), Positives = 361/509 (70%)

Query:     1 MDSSNTDNNNNVHEPML--QSNGXXXXXXXXXXXXXXXXXXXXFFQRIKKATWIELKNLF 58
             MDSS    N+ VH+P+L  Q +                      F R++KAT IE K LF
Sbjct:     1 MDSSP---NDGVHQPLLHPQPSPSPPESTNGELETVLSDVETPLFLRLRKATIIESKLLF 57

Query:    59 RLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETL 118
              LAAPA++VYM+N L++MSTQIF GHLGNLELAA SLGNTGIQVFAYGLMLGMGSA ETL
Sbjct:    58 NLAAPAVIVYMINYLMSMSTQIFSGHLGNLELAAASLGNTGIQVFAYGLMLGMGSAVETL 117

Query:   119 CGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGEXXXXXXXXXXFVF 178
             CGQAYG +KY+MLGVYLQRS V+LT TG+ L +IY+FS+ ILL LGE          FV+
Sbjct:   118 CGQAYGGRKYEMLGVYLQRSTVLLTLTGLLLTLIYVFSEPILLFLGESPAIASAASLFVY 177

Query:   179 GLIPQIFAYAVNFPIQKFLQXXXXXXXXXXXXXXTLVVHVLLSWVAIFKXXXXXXXXXXX 238
             GLIPQIFAYA NFPIQKFLQ              TL VH+LLSW+A++K           
Sbjct:   178 GLIPQIFAYAANFPIQKFLQSQSIVAPSAYISTATLFVHLLLSWLAVYKLGMGLLGASLV 237

Query:   239 XXXXXXIIVAAQFVYILLSERCKKTWTGFSLQAFSGLWDFLKLSTASAVMLCLEIWYYQI 298
                   IIV AQFVYI+ SERC++TW GFS+QAFSGLW F KLS ASAVMLCLE WY+QI
Sbjct:   238 LSLSWWIIVVAQFVYIVTSERCRETWRGFSVQAFSGLWSFFKLSAASAVMLCLETWYFQI 297

Query:   299 IVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFXXX 358
             +VL+AGLL+N E+ LDSLSICMTI+GWVFMI+VGFNAA SVRV NELGA +PKS  F   
Sbjct:   298 LVLLAGLLENPELALDSLSICMTISGWVFMISVGFNAAISVRVSNELGAGNPKSAAFSVI 357

Query:   359 XXXXXXXXXXXXXXXXXXXXRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSG 418
                                 R+V+SYAFT G  V+D+V++L P LA++++LNGIQPVLSG
Sbjct:   358 IVNIYSLITCVILAIVILACRDVLSYAFTEGKEVSDAVSDLCPLLAVTLVLNGIQPVLSG 417

Query:   419 VAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVT 478
             VAVGCGWQ FVA VNVGCYY+IGIP+G L GF FN G KGIW+GMIGGT+IQT IL +VT
Sbjct:   418 VAVGCGWQTFVAKVNVGCYYIIGIPLGALFGFYFNFGAKGIWTGMIGGTVIQTFILAWVT 477

Query:   479 LRTDWNKEVEKARNRMDEWGDKTELLLKE 507
              RTDW KEVE+A  R+D+W +K + ++ E
Sbjct:   478 FRTDWTKEVEEASKRLDKWSNKKQEVVPE 506
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0009610 "response to symbiotic fungus" evidence=RCA
GO:0015824 "proline transport" evidence=RCA
TAIR|locus:2027322 AT1G11670 "AT1G11670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036848 AT1G61890 "AT1G61890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144421 AT5G38030 "AT5G38030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010401 RSH2 "AT1G12950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088822 AT3G26590 "AT3G26590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015368 AT1G47530 "AT1G47530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028115 AT1G23300 "AT1G23300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077725 TT12 "AT3G59030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168210 AT5G65380 "AT5G65380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9USK3YJ2D_SCHPONo assigned EC number0.30870.94080.8849yesno
Q5RFD2S47A1_PONABNo assigned EC number0.33190.91910.8175yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00110024
hypothetical protein (501 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query507
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-178
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 6e-72
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 3e-56
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 1e-46
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 4e-42
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 2e-33
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 2e-29
pfam01554161 pfam01554, MatE, MatE 2e-28
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 6e-27
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 3e-26
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 4e-24
pfam01554161 pfam01554, MatE, MatE 1e-23
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 4e-23
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 7e-23
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 6e-20
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 4e-19
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 7e-15
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 1e-13
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 5e-12
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 7e-11
cd13141443 cd13141, MATE_like_13, Uncharacterized subfamily o 2e-10
cd13147441 cd13147, MATE_MJ0709_like, Uncharacterized subfami 3e-10
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 1e-09
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 2e-09
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 3e-09
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 8e-09
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 3e-08
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 5e-08
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 3e-07
cd13144434 cd13144, MATE_like_4, Uncharacterized subfamily of 5e-06
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 1e-04
cd13149434 cd13149, MATE_like_2, Uncharacterized subfamily of 1e-04
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 5e-04
cd13147441 cd13147, MATE_MJ0709_like, Uncharacterized subfami 8e-04
cd13128402 cd13128, MATE_Wzx_like, Wzx, a subfamily of the mu 0.002
COG0728518 COG0728, MviN, Uncharacterized membrane protein, p 0.003
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  507 bits (1307), Expect = e-178
 Identities = 210/437 (48%), Positives = 300/437 (68%), Gaps = 1/437 (0%)

Query: 53  ELKNLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMG 112
           E K L RLAAP +L  +L   +++ + +F GHLG LELAA SL ++   V  + ++LG+ 
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 113 SATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASA 172
           SA +TLCGQA+GA+ Y ++GVYLQR+ VIL    +P+ ++++ ++ ILLLLG+   IA  
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 173 AAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGL 232
           A  ++  LIP +FAYA+  P++++LQAQ I+ P  YIS   L++++LL+++ +F LG G 
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 233 LGASLVLSLSWWIIVAAQFVYILLSERCKKTWTGFSLQAFSGLWDFLKLSTASAVMLCLE 292
           +GA+L  S+S+W+IV    +YI  S+  K TW GFS +AF G   FLKL+  SA+MLCLE
Sbjct: 181 IGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLCLE 240

Query: 293 IWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKS 352
            W ++I+VL+AGLL    + L + SIC+T    ++MI +G + AASVRVGNELGA +PK 
Sbjct: 241 WWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNPKR 299

Query: 353 CKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGI 412
            K + IV   +SL + V++AIL+L+LR+V +Y FT    V   VA+L P LAL  I +G+
Sbjct: 300 AKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQIFDGL 359

Query: 413 QPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTI 472
           Q VLSGV  GCG Q   AYVN+  YYLIG+P+G LL F   LG KG+W G+I G ++Q +
Sbjct: 360 QAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLGLKGLWIGLIAGLILQAV 419

Query: 473 ILVYVTLRTDWNKEVEK 489
           IL+ + LRTDW+KE EK
Sbjct: 420 ILLLIILRTDWDKEAEK 436

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240546 cd13141, MATE_like_13, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709 Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240554 cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709 Back     alignment and domain information
>gnl|CDD|240533 cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|223800 COG0728, MviN, Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 507
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 100.0
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.97
PRK10459492 colanic acid exporter; Provisional 99.97
COG2244480 RfbX Membrane protein involved in the export of O- 99.95
PRK00187464 multidrug efflux protein NorA; Provisional 99.88
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 99.88
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.87
PRK10189 478 MATE family multidrug exporter; Provisional 99.87
PRK01766 456 multidrug efflux protein; Reviewed 99.87
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.86
TIGR01695502 mviN integral membrane protein MviN. This model re 99.8
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.77
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.76
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.73
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.71
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.71
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.71
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.69
PRK15099416 O-antigen translocase; Provisional 99.66
PRK10459492 colanic acid exporter; Provisional 99.65
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.6
COG2244480 RfbX Membrane protein involved in the export of O- 99.54
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 99.36
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 99.28
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.24
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 99.1
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.47
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.41
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 98.09
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.03
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.0
COG4267467 Predicted membrane protein [Function unknown] 97.99
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 97.92
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 97.66
COG4267 467 Predicted membrane protein [Function unknown] 84.46
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=5.7e-56  Score=442.13  Aligned_cols=437  Identities=26%  Similarity=0.403  Sum_probs=411.1

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc
Q 010561           50 TWIELKNLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYD  129 (507)
Q Consensus        50 ~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~  129 (507)
                      .++..|+++++++|.+++++++.+++.+|++++||+|++++++.+++.++.. +...+..|++.|.++.++|++|+||++
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~-~~~~~~~gl~~g~~~liaq~~Ga~~~~   90 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFF-LIIAIFIGLGTGTTVLVAQAIGAGDRK   90 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHcCCchH
Confidence            4568899999999999999999999999999999999999999999999999 888899999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHH
Q 010561          130 MLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAY  208 (507)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  208 (507)
                      ++++..++++.++++++++..++ +.+.++++.+++.++++.+.+.+|+++..++.++..+..++.+.+|+.||+|.+++
T Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~  170 (455)
T COG0534          91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY  170 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence            99999999999999999887776 99999999999998889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHh-cC-CccchhHHHHHHHHHHHHHHHHHHHHhccc-cccccCCCCHHhhhhhHHHHHHHHHH
Q 010561          209 ISAATLVVHVLLSWVAIFK-LG-WGLLGASLVLSLSWWIIVAAQFVYILLSER-CKKTWTGFSLQAFSGLWDFLKLSTAS  285 (507)
Q Consensus       209 ~~i~~~~~~i~l~~~li~~-~~-~g~~g~~~a~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~p~  285 (507)
                      .++++.++|+++|++++++ ++ +|+.|+++||++++.+..++..++.+++++ ......+..+.+++.+|++++.|+|.
T Consensus       171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~  250 (455)
T COG0534         171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI  250 (455)
T ss_pred             HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence            9999999999999999998 57 999999999999999999999999988753 22222233233447799999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHH
Q 010561          286 AVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSISL  365 (507)
Q Consensus       286 ~~~~~~~~~~~~~~~~l~~~~~~~~~~va~~~i~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~  365 (507)
                      ++++......+...+.+++++|  +.++|+|+++.++.++.++++.|++++.+|.+++++|+||++++++..+.+.+++.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~  328 (455)
T COG0534         251 FLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL  328 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998  55688999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhhccCchhHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHHhhHHHH
Q 010561          366 ALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIG  445 (507)
Q Consensus       366 ~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~  445 (507)
                      .+++..++++++++++++.+|++|+++.+.+..++++.++..++++++.+..+.+|+.||++.++..++++.|.+.+|+.
T Consensus       329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~  408 (455)
T COG0534         329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA  408 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Q 010561          446 CLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRTDWNKEVEKA  490 (507)
Q Consensus       446 ~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~  490 (507)
                      ++++.+. +|..|+|++..+++.+..++..+++++.+|+++..+.
T Consensus       409 ~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (455)
T COG0534         409 YLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVAA  452 (455)
T ss_pred             HHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence            9998766 8999999999999999999999999999998875443

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query507
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 3e-08
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 81/436 (18%), Positives = 165/436 (37%), Gaps = 22/436 (5%)
Query: 44  QRIKKATWIELKNLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVF 103
            R KK    E  NL +LA P ++  +    +     I  G +  +++AAVS+  +   ++
Sbjct: 5   HRYKK----EASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAAS---IW 57
Query: 104 AYGLMLGMG--SATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILL 161
              ++ G+G   A   +  Q  GA +   +   + +  ++     +P++ +   ++ I+ 
Sbjct: 58  LPSILFGVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIR 117
Query: 162 LLGEXXXXXXXXXXFVFGLIPQIFAYAVNFPIQKFLQXXXXXXXXXXXXXXTLVVHVLLS 221
            +            ++  +I  + AY +   ++ F                 L++++ L+
Sbjct: 118 FMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLN 177
Query: 222 WVAIFKXXXXXXXXXXXXXXXXXII----VAAQFVYILLSERCK--KTWTGFSLQAFSGL 275
           W+ ++                  I+    +     YI+ S+R    K +  F       L
Sbjct: 178 WIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKEL 237
Query: 276 WDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNA 335
               +L    A  L  E+  + ++ L+   L +   V+ +  + +  +  VFM  +   A
Sbjct: 238 IRLFRLGFPVAAALFFEVTLFAVVALLVAPLGST--VVAAHQVALNFSSLVFMFPMSIGA 295
Query: 336 AASVRVGNELGAAHPKSCKFXXXXXXXXXXXXXXXXXXXXXXXRNVMSYAFTGGSTVADS 395
           A S+RVG++LG    K                           R  ++  +T    V   
Sbjct: 296 AVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVAL 355
Query: 396 VAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGF----- 450
             +L  F A+   ++ +Q V +G   G      + +     Y+++G+P G +LG      
Sbjct: 356 AMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLT 415
Query: 451 KFNLGTKGIWSGMIGG 466
           +  LG KG W G I G
Sbjct: 416 EQPLGAKGFWLGFIIG 431

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query507
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 1e-80
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  257 bits (659), Expect = 1e-80
 Identities = 95/437 (21%), Positives = 193/437 (44%), Gaps = 14/437 (3%)

Query: 51  WIELKNLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLG 110
             E  NL +LA P ++  +    +     I  G +  +++AAVS+  + I + +    +G
Sbjct: 8   KKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAAS-IWLPSILFGVG 66

Query: 111 MGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIA 170
           +  A   +  Q  GA +   +   + +  ++     +P++ +   ++ I+  +    A+A
Sbjct: 67  LLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMA 126

Query: 171 SAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIF-KLG 229
           +    ++  +I  + AY +   ++ F    S+  P+  I    L++++ L+W+ ++ K G
Sbjct: 127 TKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFG 186

Query: 230 ---WGLLGASLVLSLSWWIIVAAQFVYILLSERCK--KTWTGFSLQAFSGLWDFLKLSTA 284
               G +G  +  ++ +WI++     YI+ S+R    K +  F       L    +L   
Sbjct: 187 APELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFP 246

Query: 285 SAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNE 344
            A  L  E+  + ++ L+   L     V+ +  + +  +  VFM  +   AA S+RVG++
Sbjct: 247 VAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHK 304

Query: 345 LGAAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLA 404
           LG    K    +  V     LA + I A+L ++ R  ++  +T    V     +L  F A
Sbjct: 305 LGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAA 364

Query: 405 LSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGF-----KFNLGTKGI 459
           +   ++ +Q V +G   G      + +     Y+++G+P G +LG      +  LG KG 
Sbjct: 365 IYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGF 424

Query: 460 WSGMIGGTLIQTIILVY 476
           W G I G     ++L  
Sbjct: 425 WLGFIIGLSAAALMLGQ 441

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query507
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.83
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=2.2e-48  Score=393.92  Aligned_cols=431  Identities=21%  Similarity=0.377  Sum_probs=394.1

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 010561           49 ATWIELKNLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKY  128 (507)
Q Consensus        49 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~  128 (507)
                      ..++..|++++.++|.++++++..+.+.+|+.+++|+|++++|+++++.++.. +...+..|++.+..+.+++++|++|+
T Consensus         6 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~-~~~~~~~g~~~~~~~~is~~~g~~~~   84 (460)
T 3mkt_A            6 RYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWL-PSILFGVGLLMALVPVVAQLNGAGRQ   84 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHH-HHHHHHHHHHHHHGGGCTTTTSSSST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence            34678899999999999999999999999999999999999999999999988 77778899999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHH
Q 010561          129 DMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAY  208 (507)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  208 (507)
                      ++.++.+++++.+.++.++++.++..+.++++.+++.+++..+.+..|++++.++.++..+...+.+.+|+.|+++.++.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  164 (460)
T 3mkt_A           85 HKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMV  164 (460)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            99999999999999999998877778889999989989999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHh-c---CCccchhHHHHHHHHHHHHHHHHHHHHhcccccc-c-cCCCCHHhhhhhHHHHHHH
Q 010561          209 ISAATLVVHVLLSWVAIFK-L---GWGLLGASLVLSLSWWIIVAAQFVYILLSERCKK-T-WTGFSLQAFSGLWDFLKLS  282 (507)
Q Consensus       209 ~~i~~~~~~i~l~~~li~~-~---~~g~~g~~~a~~l~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~  282 (507)
                      .++++.++|+++++++++. +   ++|+.|+++++.+++.+..++..++.+++++.+. + ++++...+++.+|+++++|
T Consensus       165 ~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  244 (460)
T 3mkt_A          165 IGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLG  244 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHh
Confidence            9999999999999999975 3   6899999999999999999988888776533221 1 1222233446799999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHH
Q 010561          283 TASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTS  362 (507)
Q Consensus       283 ~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~va~~~i~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~  362 (507)
                      +|.+++++...+.+.+++.+++.+|  +.++++|++++++.++..++..+++++..|.+++++|++|.++.++..+++.+
T Consensus       245 ~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~  322 (460)
T 3mkt_A          245 FPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLM  322 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999986  45688999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhccCchhHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHHhhH
Q 010561          363 ISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGI  442 (507)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i  442 (507)
                      ++..+++++++++.++++++..+|.+|+++++.+..++++++++.++.+++.+..+++++.||++.+++.++++.|++++
T Consensus       323 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i  402 (460)
T 3mkt_A          323 TGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGL  402 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988899999999999999999999999999999999999999999999989999


Q ss_pred             HHHHHHHHh----cC-CCcchHHHHHHHHHHHHHHHHHHHHHhcC
Q 010561          443 PIGCLLGFK----FN-LGTKGIWSGMIGGTLIQTIILVYVTLRTD  482 (507)
Q Consensus       443 ~l~~~l~~~----~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~  482 (507)
                      |+++++...    ++ +|..|+|+++.+++++..++..++++|..
T Consensus       403 ~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~  447 (460)
T 3mkt_A          403 PTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQ  447 (460)
T ss_dssp             HHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSC
T ss_pred             HHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999776    56 89999999999999998888766665544
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00