Citrus Sinensis ID: 010579

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------
Protein Sequence
MVRNLVVFLLILVFFFGGFSSVSASTPPAKIVAGIVSNVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPRTQMKRGPPAVAPYQRPPKSARPPLVPTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQRQHQYQQRNVPPSTWHMQESYVIPDEDEPPPLETRTPTPKKSYHPYTIKDLDKRQYTKQSKSYYNGWEVDYHHGQQQQMPIHHQQQQHHHRQFSPHPQTYYEKSCETNEIVFGAVQEQDGRREAVVIKAVDYGDPRYNHHNIRPRLNYMGYSNSYSQVY
Secondary Structure (PSIPRED)
ccccEEEEEEEEEEEccccccccccccccEEEEEccccEEEEEcccEEEEEccccEEEEcccEEEEEccccccccccccccccccEEEEEcccccEEEEEccccEEEEEEcccccccccEEEEcccccccccccccccccccccccEEEEcccccEEEEEccccEEEEEccccEEEEEEEcccccccccccccccccccccccEEEEccccEEEEEEccccEEEEEEcccccEEEccccccccccEEEEccccEEEEEEEcccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccEEEEEcccccEEEEccccEEccccccccccccccccccEEEEccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccEEEccccccccccccEEEEEcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHcccccccccccHHHHcHHHHHHHHHHHHHHHHcccccccEcccccEEEEccccEEEEEEccccccccccEEEEcccccEEEEEccccEEEEEEcccccccEEEEEEEccccccccccccccHcEcccccEEEEcccccEEEEEccccEEEEEccccEEEEEEcccccccccccccHHHHcccccccEEEEcccccEEEEEccccEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHccccccccHHHcccccccccccccccccEEccccccccccccccccccccccccccccHHHcccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccEEEEEcccccEEEEEEEEccccccEEEEEEEEccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MVRNLVVFLLILVFFFggfssvsastppakIVAGIVSNVVSALVKWLWslkdspktavssssmikfeggyTVETVfegskfgmepfsvavspsgellvldsensniykistslspysrpklvagspegyyghvdgrprgarmnhpkglavddrgniyiADTMNMAIRKISdtgvttiaggkwsrgvghvdgpsedakfsndfDVVYVGSSCSLLVIDRGNQAIREIQlhdddcsdnyddtfHLGIFVLVAAAFFGYMLALLQRRVQAMfsskddprtqmkrgppavapyqrppksarpplvpteddfekpeegffgsigrlvlntgstvgeiFGGLFsmfrrkpvhyqrqhqyqqrnvppstwhmqesyvipdedepppletrtptpkksyhpytikdldkrqytkqsksyyngwevdyhhgqqqqmpihhqqqqhhhrqfsphpqtyyekscetnEIVFGAvqeqdgrrEAVVIKAvdygdprynhhnirprlnymgysnsysqvy
Flexible Loop (DISEMBL)
MVRNLVVFLLILVFFFGGFSSVSASTPPAKIVAGIVSNVVSALVKWLWSlkdspktavssssmikfeGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKistslspysrpkLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFsskddprtqmkrgppavapyqrppksarppLVPTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQRQHqyqqrnvppstWHMQESyvipdedepppletrtptpkksyhpytikdldkrqyTKQSKSYYNGWEVDYHHGQQQQMPIHHQQQQHHHRQFSPHPQTYYEKSCETNEIVFGavqeqdgrrEAVVIkavdygdprynhhnirprlnymgysnsysqvy
Low Complexity Region (SEG)
MVRNlvvfllilvfffggfssvsasTPPAKIVAGIVSNVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPRTQMKRGPPAVAPYQRPPKSARPPLVPTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVhyqrqhqyqqrNVPPSTWHMQESYVIpdedepppletrtptpKKSYHPYTIKDLDKRQYTKQSKSYYNGWEVDYhhgqqqqmpihhqqqqhhhrqfsphpqTYYEKSCETNEIVFGAVQEQDGRREAVVIKAVDYGDPRYNHHNIRPRLNYMGYSNSYSQVY
Disordered region (IsUnstruct)
***NLVVFLLILVFFFGGFSSVSASTPPAKIVAGIVSNVVSALVKWLWSLKD*********SMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKIS******************YYG***************GLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQA*********************************************GFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQR***********************************************************KSYYNGWEVDYH***************************YYEKSCETNEIVFGAVQEQDGRREAVVIKAVDYGDPRYNHHNIRPRLNYMGY********
Disordered Region (DISOPRED)
***NLVVFLLILVFFFGGFSSVSASTPPAKIVAGIVSNVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPRTQ*************************************GSIGRLVLNTGSTVGEIFGGLFSMFRRKPV*****************WHMQESYVIP*************************************************************************************IVFGA**************AVDYGDPRYNHHNIRPRLNYMGYS**Y****
Disordered Region (DISEMBL)
MVRNLVVFLLILVFFFGGFSSVSASTPPAKIVAGIVSNVVSALVKWLWSLK********SSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMF*****************APYQRPPKSARPPLVPTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPV***********NVPPSTWHMQESYVIPDEDEPPPLETRTPTPKKSYHPYTIKDLDKRQYTKQSKSYYNGWEVDYHHG************************TYYEKSCETNEIVFGAVQEQDGRREAVVIKAVDYGDPRYNHHNIRPRLNYMGYSNSYSQVY
Disordered Region (DISPRO)
*VRNLVVFLLILVFFFGGFSSVSASTPPAKIVAGIVSNVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSK***********************ARPPL*********PEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQRQHQYQQRNVPPSTWHMQESYVIPDEDEPPPLETRTPTPKKSYHPYTIKDLDKRQYTKQSKSYYNGWEVDYHHGQQQQMPIHHQQQQHHHRQFSPHPQTYYEKSCETNEIVFGAVQEQDGRREAVVIKAVDYGDPRYNHHNIRPRLNYMGYSNSYSQVY
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVRNLVVFLLILVFFFGGFSSVSASTPPAKIVAGIVSNVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPRTQMKRGPPAVAPYQRPPKSARPPLVPTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQRQHQYQQRNVPPSTWHMQESYVIPDEDEPPPLETRTPTPKKSYHPYTIKDLDKRQYTKQSKSYYNGWEVDYHHGQQQQMPIHHQQQQHHHRQFSPHPQTYYEKSCETNEIVFGAVQEQDGRREAVVIKAVDYGDPRYNHHNIRPRLNYMGYSNSYSQVY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	507	2.2.26 [Sep-21-2011]
Q9WTS6	2715	Teneurin-3 OS=Mus musculu	yes	no	0.189	0.035	0.300	0.0007

>sp|Q9WTS6|TEN3_MOUSE Teneurin-3 OS=Mus musculus GN=Tenm3 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 17/113 (15%)

Query: 68   GGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPE 127
            G + V+T  E +       ++AVS SG L + +++   I +I   ++      LVAG P 
Sbjct: 1410 GKHAVQTTLESAT------AIAVSYSGVLYITETDEKKINRIR-QVTTDGEISLVAGIPS 1462

Query: 128  ----------GYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKIS 170
                        Y   DG  + A++N P  LA    G +YIAD  N+ IR +S
Sbjct: 1463 ECDCKNDANCDCYQSGDGYAKDAKLNAPSSLAASPDGTLYIADLGNIRIRAVS 1515

May function as a cellular signal transducer.
Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	507
255552640	494	conserved hypothetical protein [Ricinus	0.966	0.991	0.729	0.0
449492692	516	PREDICTED: uncharacterized protein LOC10	0.986	0.968	0.670	0.0
296087695	811	unnamed protein product [Vitis vinifera]	0.986	0.616	0.715	0.0
225452518	677	PREDICTED: uncharacterized protein LOC10	0.972	0.728	0.712	0.0
449449204	454	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.893	0.997	0.685	1e-172
147860395	527	hypothetical protein VITISV_043282 [Viti	0.932	0.897	0.655	1e-171
224102017	494	predicted protein [Populus trichocarpa]	0.960	0.985	0.635	1e-171
255560011	500	conserved hypothetical protein [Ricinus	0.913	0.926	0.651	1e-169
224140207	453	predicted protein [Populus trichocarpa]	0.867	0.971	0.687	1e-168
356573394	528	PREDICTED: uncharacterized protein LOC10	0.978	0.939	0.624	1e-167

>gi|255552640|ref|XP_002517363.1| conserved hypothetical protein [Ricinus communis] gi|223543374|gb|EEF44905.1| conserved hypothetical protein [Ricinus communis]

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/507 (72%), Positives = 413/507 (81%), Gaps = 17/507 (3%)

Query: 1   MVRNLVVFLLILVFFFGGFSSVSASTPPAKIVAGIVSNVVSALVKWLWSLKDSPKTAVSS 60
           M +N VVF    +    G SSVSA TPP KIV+G+VSNVVSALVKWLWSLK + KTA SS
Sbjct: 1   MCKNWVVFAFTFLVLLSGLSSVSA-TPPVKIVSGVVSNVVSALVKWLWSLKSNTKTAASS 59

Query: 61  SSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPK 120
            SM+KFEGGYTVETVF+GSK G+EP +V VSPSGELLVLDSENSNIYKIST LS YSRPK
Sbjct: 60  RSMMKFEGGYTVETVFDGSKLGIEPHTVDVSPSGELLVLDSENSNIYKISTPLSRYSRPK 119

Query: 121 LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGG 180
           L+AGSPEGY GHVDGR R ARMNHPKGL VD+RGNIYIADTMNMAIRKISD GVTTIAGG
Sbjct: 120 LIAGSPEGYSGHVDGRLREARMNHPKGLTVDNRGNIYIADTMNMAIRKISDGGVTTIAGG 179

Query: 181 KWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDT 240
           KW+R  GHVDGPSEDAKFSNDFD+ Y+GSSCSLLVIDRGNQAIREIQL+DDDC++ YD T
Sbjct: 180 KWTRAGGHVDGPSEDAKFSNDFDIAYIGSSCSLLVIDRGNQAIREIQLNDDDCNNQYDGT 239

Query: 241 FHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPRTQMKRGPPAVAPYQRPPKSARPPL 300
           FHLGI VLVAAAFFGYMLALLQ RVQ +FS ++DPRT MK G P +APYQRPPK  RPPL
Sbjct: 240 FHLGIAVLVAAAFFGYMLALLQWRVQTLFSPRNDPRTYMKNGTP-MAPYQRPPKPVRPPL 298

Query: 301 VPTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQRQHQYQQRNVPP 360
           VP++D+ +KP+EGFFGS+G+LVL          GGLFS FRRKP+HYQ Q QYQQ+    
Sbjct: 299 VPSDDEPDKPDEGFFGSLGKLVL----------GGLFSGFRRKPLHYQFQQQYQQQLKHS 348

Query: 361 STWHMQESYVIPDEDEPPPLETRTPTPKKSYHPYTIKDLDKRQYTKQSKSYYNGWEVDY- 419
           + W MQES+VIPDEDEPP LETRTPT KK+Y P     ++K    KQS  YYNGW+ DY 
Sbjct: 349 NPWPMQESFVIPDEDEPPSLETRTPTSKKAY-PSMTNGVEKHYQFKQSSGYYNGWDGDYH 407

Query: 420 ---HHGQQQQMPIHHQQQQHHHRQFSPHPQTYYEKSCETNEIVFGAVQEQDGRREAVVIK 476
                  Q QM  H +QQQHHHR ++ +P+TYYEKSCETNEIVFGAVQEQDGRREAVVIK
Sbjct: 408 QQQQMQMQVQMQQHQKQQQHHHRHYTSNPKTYYEKSCETNEIVFGAVQEQDGRREAVVIK 467

Query: 477 AVDYGDPRYNHHNIRPRLNYMGYSNSY 503
           AVDY DPRYNHHNIRPR NY+GYS+ Y
Sbjct: 468 AVDYADPRYNHHNIRPRFNYVGYSHGY 494

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449492692|ref|XP_004159073.1| PREDICTED: uncharacterized protein LOC101226879 [Cucumis sativus]

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/519 (67%), Positives = 415/519 (79%), Gaps = 19/519 (3%)

Query: 1   MVRNLVVFLLILVFFFGGFSSVSASTPPAKIVAGIVSNVVSALVKWLWSLKDSPKTAVSS 60
           M R  V F L+ +  FGG SSVSA TPPAKIV G++SNVVS+LVK LWS+K S KTAVSS
Sbjct: 1   MARIWVAFALVFLLLFGGVSSVSA-TPPAKIVRGVLSNVVSSLVKKLWSMKSSAKTAVSS 59

Query: 61  SSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPK 120
            SM+KFE GY+VETVF+GSK G++P+SV +SPSGELL+LD+ENSNI+KIS  LS +SRPK
Sbjct: 60  RSMMKFESGYSVETVFDGSKLGIDPYSVEMSPSGELLILDAENSNIHKISMPLSRFSRPK 119

Query: 121 LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGG 180
           LV+GS EGY GHVDG  R ARMNHPKGL +D+RGNIYIADTMNMAIRKISDTGVTTIAGG
Sbjct: 120 LVSGSAEGYSGHVDGHSREARMNHPKGLTLDERGNIYIADTMNMAIRKISDTGVTTIAGG 179

Query: 181 KWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDT 240
           +W++G GH+DGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN+AIREI+L+ DDC+  Y D+
Sbjct: 180 RWNQGSGHIDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNKAIREIELNYDDCNTQYADS 239

Query: 241 FHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPRT---QMKRGPPAVAPYQRPP-KSA 296
            +LG+ +LVAA  FGY+LALLQRRVQAMFSS+ D      QM +  P VAPYQRPP KS 
Sbjct: 240 LNLGVVLLVAAGLFGYLLALLQRRVQAMFSSQKDQEIRSQQMMKATP-VAPYQRPPLKSV 298

Query: 297 RPPLVPTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQRQHQYQQR 356
           RP L+P+ED+ EK EEGFFGS+GRL +N+GS++ +IFGGL S FRRKP+++Q   Q+Q  
Sbjct: 299 RPSLIPSEDEPEKLEEGFFGSLGRLFVNSGSSMADIFGGLLSGFRRKPLNHQIHQQFQPV 358

Query: 357 NVPPSTWHMQESYVIPDEDEPPPLETRTPTPKKSYHPYTIKDLDKRQYTKQSKSYYNGWE 416
           N  P+ W +QES+VIPDEDEPP +ET+TPT KK+Y P+  +DLD+    K ++SY++GW+
Sbjct: 359 NRHPNAWPLQESFVIPDEDEPPSIETKTPTIKKTY-PFMTQDLDRSHQFKPNRSYFSGWD 417

Query: 417 VDY------------HHGQQQQMPIHHQQQQHHHRQFSPHPQTYYEKSCETNEIVFGAVQ 464
            ++            H  Q  Q   H QQQQ+HHRQ+S  P TYYEKSCETNEIVFGAVQ
Sbjct: 418 GEFHQQQQQQQIQHHHQQQHIQHHHHQQQQQYHHRQYSAGPTTYYEKSCETNEIVFGAVQ 477

Query: 465 EQDGRREAVVIKAVDYGDPRYNHHNIRPRLNYMGYSNSY 503
           EQDGRREA+VIKAVDYGDPRYNHHNIR R NY G  NSY
Sbjct: 478 EQDGRREAMVIKAVDYGDPRYNHHNIRARYNYTGNPNSY 516

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087695|emb|CBI34951.3| unnamed protein product [Vitis vinifera]

 Score =  671 bits (1732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/507 (71%), Positives = 418/507 (82%), Gaps = 7/507 (1%)

Query: 2   VRNLVVFLLILVFFFGGFSSVSASTPPAKIVAGIVSNVVSALVKWLWSLKDSPKTAVSSS 61
           +RN  V L +++  FGGFSSVSAS P AKIV+GIVSNVVSALVKWLWSLK +  TA+SS 
Sbjct: 1   MRNNWVGLFLILVVFGGFSSVSASPPVAKIVSGIVSNVVSALVKWLWSLKSTTNTAISSR 60

Query: 62  SMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKL 121
           S + FE GYTVETVF+GSK G+EP+S+ VS SGELLVLDSENSNIYKIS+ LS YSRPKL
Sbjct: 61  SKMNFEDGYTVETVFDGSKLGIEPYSLEVSTSGELLVLDSENSNIYKISSPLSRYSRPKL 120

Query: 122 VAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGK 181
           VAGSP+GY GHVDG+ R ARMNHPKGL +D+RGNIYIADTMNMAIRKISD GVTTIAGGK
Sbjct: 121 VAGSPDGYSGHVDGKLREARMNHPKGLTMDERGNIYIADTMNMAIRKISDAGVTTIAGGK 180

Query: 182 WSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTF 241
           W RG GHVDGPSEDAKFSNDFDVVY+GSSCSLLVIDRGNQAIREIQLH +DC+  Y+ +F
Sbjct: 181 WGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNQAIREIQLHYEDCAYQYNGSF 240

Query: 242 HLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPRTQMKRGPPAVAPYQRPPKSARPPLV 301
           HLGI VLVAA FFGYMLALLQRRV AMFSS+ D  T MK+G P  + YQRP KS R PL+
Sbjct: 241 HLGIAVLVAAGFFGYMLALLQRRVAAMFSSQYDSSTPMKKGMPPES-YQRPLKSVRAPLI 299

Query: 302 PTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQRQHQYQQRNVPPS 361
           PTED++EK +EGFFGS+GRL LNTGST+ EIFGGLFS  R+KP H Q Q QY Q NV  +
Sbjct: 300 PTEDEYEKADEGFFGSLGRLFLNTGSTLAEIFGGLFSGSRKKPPHQQIQQQYGQPNVHSN 359

Query: 362 TWHMQESYVIPDEDEPPPLETRTPTPKKSYHPYTIKDLDKRQYTKQSKSYY-NGWEVDYH 420
            W MQESYVIPDEDEPP +E+R PTPKK+Y P+   +++K  + +QS+++Y NGW+ +Y 
Sbjct: 360 GWPMQESYVIPDEDEPPSIESRAPTPKKTY-PFMTPEMEKTHHFRQSRTFYSNGWDGNYQ 418

Query: 421 HGQQQQMPIHHQQQQHHHRQFSPHPQTYYEKSCET-NEIVFGAVQEQDGRREAVVIKAVD 479
             QQ+Q+    Q QQHH + +S +PQTYYE+SCET NEIVFGAVQEQDGRREA+VIKAVD
Sbjct: 419 QLQQKQIQQKQQYQQHHQKHYSSNPQTYYEQSCETKNEIVFGAVQEQDGRREAMVIKAVD 478

Query: 480 YGDPRYNHHNIRPRLNYMGYSNSYSQV 506
           YGDP YNHHNIRPRLNYM    SYS +
Sbjct: 479 YGDPVYNHHNIRPRLNYMA---SYSHI 502

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452518|ref|XP_002274991.1| PREDICTED: uncharacterized protein LOC100266244 [Vitis vinifera]

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/504 (71%), Positives = 413/504 (81%), Gaps = 11/504 (2%)

Query: 2   VRNLVVFLLILVFFFGGFSSVSASTPPAKIVAGIVSNVVSALVKWLWSLKDSPKTAVSSS 61
           +RN  V L +++  FGGFSSVSAS P AKIV+GIVSNVVSALVKWLWSLK +  TA+SS 
Sbjct: 1   MRNNWVGLFLILVVFGGFSSVSASPPVAKIVSGIVSNVVSALVKWLWSLKSTTNTAISSR 60

Query: 62  SMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKL 121
           S + FE GYTVETVF+GSK G+EP+S+ VS SGELLVLDSENSNIYKIS+ LS YSRPKL
Sbjct: 61  SKMNFEDGYTVETVFDGSKLGIEPYSLEVSTSGELLVLDSENSNIYKISSPLSRYSRPKL 120

Query: 122 VAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGK 181
           VAGSP+GY GHVDG+ R ARMNHPKGL +D+RGNIYIADTMNMAIRKISD GVTTIAGGK
Sbjct: 121 VAGSPDGYSGHVDGKLREARMNHPKGLTMDERGNIYIADTMNMAIRKISDAGVTTIAGGK 180

Query: 182 WSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTF 241
           W RG GHVDGPSEDAKFSNDFDVVY+GSSCSLLVIDRGNQAIREIQLH +DC+  Y+ +F
Sbjct: 181 WGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNQAIREIQLHYEDCAYQYNGSF 240

Query: 242 HLGIFVLVAAAFFGYMLALLQRRVQAMFSSK--DDPRTQMKRGPPAVAPYQRPPKSARPP 299
           HLGI VLVAA FFGYMLALLQRRV AMFSS+   DP          +  YQRP KS R P
Sbjct: 241 HLGIAVLVAAGFFGYMLALLQRRVAAMFSSQYVSDPAFF------TLQSYQRPLKSVRAP 294

Query: 300 LVPTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQRQHQYQQRNVP 359
           L+PTED++EK +EGFFGS+GRL LNTGST+ EIFGGLFS  R+KP H Q Q QY Q NV 
Sbjct: 295 LIPTEDEYEKADEGFFGSLGRLFLNTGSTLAEIFGGLFSGSRKKPPHQQIQQQYGQPNVH 354

Query: 360 PSTWHMQESYVIPDEDEPPPLETRTPTPKKSYHPYTIKDLDKRQYTKQSKSYY-NGWEVD 418
            + W MQESYVIPDEDEPP +E+R PTPKK+Y P+   +++K  + +QS+++Y NGW+ +
Sbjct: 355 SNGWPMQESYVIPDEDEPPSIESRAPTPKKTY-PFMTPEMEKTHHFRQSRTFYSNGWDGN 413

Query: 419 YHHGQQQQMPIHHQQQQHHHRQFSPHPQTYYEKSCET-NEIVFGAVQEQDGRREAVVIKA 477
           Y   QQ+Q+    Q QQHH + +S +PQTYYE+SCET NEIVFGAVQEQDGRREA+VIKA
Sbjct: 414 YQQLQQKQIQQKQQYQQHHQKHYSSNPQTYYEQSCETKNEIVFGAVQEQDGRREAMVIKA 473

Query: 478 VDYGDPRYNHHNIRPRLNYMGYSN 501
           VDYGDP YNHHNIRPRLNYMGYS+
Sbjct: 474 VDYGDPVYNHHNIRPRLNYMGYSH 497

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449204|ref|XP_004142355.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101209861 [Cucumis sativus]

 Score =  611 bits (1575), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 312/455 (68%), Positives = 370/455 (81%), Gaps = 2/455 (0%)

Query: 50  LKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKI 109
           +K S KTAVSS SM+KFE GY+VETVF+GSK G++P+SV +SPSGELL+LD+ENSNI+KI
Sbjct: 1   MKSSAKTAVSSRSMMKFESGYSVETVFDGSKLGIDPYSVEMSPSGELLILDAENSNIHKI 60

Query: 110 STSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKI 169
           S  LS +SRPKLV+GS EGY GHVDG  R ARMNHPKGL +D+RGNIYIADTMNMAIRKI
Sbjct: 61  SMPLSRFSRPKLVSGSAEGYSGHVDGHSREARMNHPKGLTLDERGNIYIADTMNMAIRKI 120

Query: 170 SDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH 229
           SDTGVTTIAGG+W++G GH+DGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN+AIREI+L+
Sbjct: 121 SDTGVTTIAGGRWNQGSGHIDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNKAIREIELN 180

Query: 230 DDDCSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPRTQMKRGPPAVAPY 289
            DDC+  Y D+ +LG+ +LVAA  FGY+LALLQRRVQAMFSS+ + R+Q       VAPY
Sbjct: 181 YDDCNTQYADSLNLGVVLLVAAGLFGYLLALLQRRVQAMFSSQKEIRSQQMMKATPVAPY 240

Query: 290 QRPP-KSARPPLVPTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQ 348
           QRPP KS RP L+P+ED+ EK EEGFFGS+GRL +N+GS++ +IFGGL S FRRKP+++Q
Sbjct: 241 QRPPLKSVRPSLIPSEDEPEKLEEGFFGSLGRLFVNSGSSMADIFGGLLSGFRRKPLNHQ 300

Query: 349 RQHQYQQRNVPPSTWHMQESYVIPDEDEPPPLETRTPTPKKSYHPYTIKDLDKRQYTKQS 408
              Q+Q  N  P+ W +QES+VIPDEDEPP +ET+TPT KK+Y P+  +DLD+    K +
Sbjct: 301 IHQQFQPVNRHPNAWPLQESFVIPDEDEPPSIETKTPTIKKTY-PFMTQDLDRSHQFKPN 359

Query: 409 KSYYNGWEVDYHHGQQQQMPIHHQQQQHHHRQFSPHPQTYYEKSCETNEIVFGAVQEQDG 468
            S  N     +H  Q  Q   H QQQQ+HHRQ+S  P TYYEKSCETNEIVFGAVQEQDG
Sbjct: 360 NSNNNSXIQHHHQQQHIQHHHHQQQQQYHHRQYSAGPTTYYEKSCETNEIVFGAVQEQDG 419

Query: 469 RREAVVIKAVDYGDPRYNHHNIRPRLNYMGYSNSY 503
           RREA+VIKAVDYGDPRYNHHNIR R NY G  NSY
Sbjct: 420 RREAMVIKAVDYGDPRYNHHNIRARYNYTGNPNSY 454

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147860395|emb|CAN80443.1| hypothetical protein VITISV_043282 [Vitis vinifera]

 Score =  609 bits (1570), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 340/519 (65%), Positives = 395/519 (76%), Gaps = 46/519 (8%)

Query: 29  AKIVAGIVSNVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSV 88
            +IV+GIVSNVVSALVKWLWSLK +  TA+SS S + FE GYTVETVF+GSK G+EP+S+
Sbjct: 11  GEIVSGIVSNVVSALVKWLWSLKSTTNTAISSXSKMNFEDGYTVETVFDGSKLGIEPYSL 70

Query: 89  AVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGL 148
            VS SGELLVLDSENSNIYKIS+ LS YSRPKLVAGSP+GY GHVDG+ R ARMNHPKGL
Sbjct: 71  EVSTSGELLVLDSENSNIYKISSPLSRYSRPKLVAGSPDGYSGHVDGKLREARMNHPKGL 130

Query: 149 AVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVG 208
            +D+RGNIYIADTMNMAIRKISD GVTTIAGGKW RG GHVDGPSEDAKFSNDFDVVY+G
Sbjct: 131 TMDERGNIYIADTMNMAIRKISDAGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIG 190

Query: 209 SSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHL------------------------- 243
           SSCSLLVIDRGNQAIREIQLH +DC+  Y+ +FHL                         
Sbjct: 191 SSCSLLVIDRGNQAIREIQLHYEDCAYQYNGSFHLGKLRLANFVIAITXPWLWRFMRRFS 250

Query: 244 -----GIFVLVAAAFFGYMLA-------LLQRRVQAMFSS-----KDDPRTQMKRGPPAV 286
                GI VLVAA FFGYMLA       LL    Q+ F++       D  T MK+G P  
Sbjct: 251 LIAVAGIAVLVAAGFFGYMLAYAACTLFLLMETCQSSFANSFHDKSSDSSTPMKKGMPPE 310

Query: 287 APYQRPPKSARPPLVPTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVH 346
           + YQRP KS R PL+PTED++EK +EGFFGS+GRL LNTGST+ EIFGGLFS  R+KP H
Sbjct: 311 S-YQRPLKSVRAPLIPTEDEYEKADEGFFGSLGRLFLNTGSTLAEIFGGLFSGSRKKPPH 369

Query: 347 YQRQHQYQQRNVPPSTWHMQESYVIPDEDEPPPLETRTPTPKKSYHPYTIKDLDKRQYTK 406
            Q Q QY Q NV  + W MQESYVIPDEDEPP +E+R PTPKK+Y P+   +++K  + +
Sbjct: 370 QQIQQQYGQPNVHSNGWPMQESYVIPDEDEPPSIESRAPTPKKTY-PFMTPEMEKXHHFR 428

Query: 407 QSKSYY-NGWEVDYHHGQQQQMPIHHQQQQHHHRQFSPHPQTYYEKSCET-NEIVFGAVQ 464
           QS+++Y NGW+ +Y   QQ+Q+    Q QQHH + +S +PQTYYE+SCET NEIVFGAVQ
Sbjct: 429 QSRTFYSNGWDGNYQQLQQKQIQQKQQYQQHHQKHYSSNPQTYYEQSCETKNEIVFGAVQ 488

Query: 465 EQDGRREAVVIKAVDYGDPRYNHHNIRPRLNYMGYSNSY 503
           EQDGRREA+VIKAVDYGDP YNHHNIRPRLNYMGYS++Y
Sbjct: 489 EQDGRREAMVIKAVDYGDPVYNHHNIRPRLNYMGYSHAY 527

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102017|ref|XP_002312513.1| predicted protein [Populus trichocarpa] gi|222852333|gb|EEE89880.1| predicted protein [Populus trichocarpa]

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 322/507 (63%), Positives = 383/507 (75%), Gaps = 20/507 (3%)

Query: 1   MVRNLVVFLLILVFFFGGFSSVSASTPPAKIVAGIVSNVVSALVKWLWSLKDSPKTAVSS 60
           M +N++V   I++ FFGG +SV  +T PAKIV G+ SNVVSAL+KWLWSLK + KT +S 
Sbjct: 4   MGKNVLVLCFIMLLFFGGVTSVPTTTSPAKIVGGLFSNVVSALMKWLWSLKATTKTVISG 63

Query: 61  SSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPK 120
             M+KFE GYTVETVF+GSK G+EP+SV V PSGELL+LDS NSNIY+IS SLS YSRPK
Sbjct: 64  RPMMKFESGYTVETVFDGSKLGIEPYSVQVLPSGELLILDSANSNIYRISASLSLYSRPK 123

Query: 121 LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGG 180
           LVAGS EGY GHVDG+ R A+MNHPKGL VDDRGNIY+ADTMNMAIRKISD GVTTIAGG
Sbjct: 124 LVAGSHEGYSGHVDGKLREAKMNHPKGLTVDDRGNIYVADTMNMAIRKISDAGVTTIAGG 183

Query: 181 KWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDT 240
           KW RG  HVDG SEDA FSNDFDVVY+GSSCSLLVIDRGN+AIREIQLH DDC+  Y   
Sbjct: 184 KWGRG-SHVDGASEDANFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSG 242

Query: 241 FHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPRTQMKRGPPAVAPYQRPPKSARPPL 300
           F LGI VLVAA FFGYMLALLQRRV  + S ++     MK     + PYQ+P KS RPPL
Sbjct: 243 FPLGIAVLVAAGFFGYMLALLQRRVGMIVSPQN---VSMKMSTTGI-PYQKPIKSIRPPL 298

Query: 301 VPTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQRQHQYQQRNVPP 360
           +PTED+ EK EEG FGS+G+L +NTG++V EIFGG+   FR+KPV YQ Q+  QQ+    
Sbjct: 299 IPTEDEQEKHEEGLFGSLGKLFINTGASVMEIFGGIVPSFRKKPVSYQYQNYQQQQYQHQ 358

Query: 361 ---STWHMQESYVIPDEDEPPPLETRTPTPKKSYHPYTIKDLDKRQYTKQSKSYYNGWEV 417
              S+W +Q+S+VIPDEDEPP +E+RTPTP+K+Y P+  KD +K    +Q +S Y+GW+ 
Sbjct: 359 KQLSSWPVQDSFVIPDEDEPPSIESRTPTPRKTY-PFMSKDTEKMHQWRQGRSIYSGWDG 417

Query: 418 DYHHGQQQQMPIHHQQQQHHHRQFSPHPQTYYEKSCE-TNEIVFGAVQEQDGRREAVVIK 476
           D          +  QQ QHHHR  S  P TYYE+S E TNEIVFGAVQEQDG+ E +V K
Sbjct: 418 D----------LQQQQHQHHHRYQSSTPHTYYEQSYEKTNEIVFGAVQEQDGKYETMVTK 467

Query: 477 AVDYGDPRYNHHNIRPRLNYMGYSNSY 503
            VDYGDP++ HHNIR R N + Y+  Y
Sbjct: 468 PVDYGDPKHYHHNIRSRTNSLHYAKGY 494

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560011|ref|XP_002521024.1| conserved hypothetical protein [Ricinus communis] gi|223539861|gb|EEF41441.1| conserved hypothetical protein [Ricinus communis]

 Score =  602 bits (1551), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 310/476 (65%), Positives = 368/476 (77%), Gaps = 13/476 (2%)

Query: 29  AKIVAGIVSNVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSV 88
           AKIV+G  SN +S  +KWLWSLK + KTA+S   M+KFEGGY VETVF+GSK G+EP+SV
Sbjct: 37  AKIVSGFFSNALSVFMKWLWSLKATSKTAISGRPMMKFEGGYNVETVFDGSKLGIEPYSV 96

Query: 89  AVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGL 148
            V P+GELL+LDS NSNIY+IS+SLS YSRPKLVAGSP+GY GHVDG+ R ARMNHPKGL
Sbjct: 97  EVLPNGELLILDSANSNIYRISSSLSLYSRPKLVAGSPDGYSGHVDGKHREARMNHPKGL 156

Query: 149 AVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVG 208
            VDDRGNIYIAD MNMAIRKISD GVTTIAGGKW RG  HVDG SEDAKFSNDFDVVY+G
Sbjct: 157 TVDDRGNIYIADAMNMAIRKISDAGVTTIAGGKWGRGGSHVDGASEDAKFSNDFDVVYIG 216

Query: 209 SSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAM 268
           SSCSLLVIDRGN+AIREIQLH DDC+  Y+  F LG+ VLVAA FFGYMLALLQRRV  +
Sbjct: 217 SSCSLLVIDRGNRAIREIQLHFDDCAYQYESGFPLGVAVLVAAGFFGYMLALLQRRVGKI 276

Query: 269 FSSKDDPRTQMKRGPPAVAPYQRPPKSARPPLVPTEDDFEKPEEGFFGSIGRLVLNTGST 328
            SS++D R  MK      +PYQ+P +S RPPL+PTED+ EK EEGFFGS+G+L  N G+ 
Sbjct: 277 VSSQND-RDAMKTSISG-SPYQKPLRSVRPPLIPTEDEQEKHEEGFFGSLGKLFANAGAC 334

Query: 329 VGEIFGGLFSMFRRKPVHYQRQHQYQQRNVPPSTWHMQESYVIPDEDEPPPLETRTPTPK 388
           V EI GG+   FR+KP++YQ   Q Q+ +   STW +Q+S+VIPDEDEPP +ETRTPTPK
Sbjct: 335 VVEILGGIVPGFRKKPLNYQYLSQQQKHS---STWPVQDSFVIPDEDEPPSIETRTPTPK 391

Query: 389 KSYHPYTIKDLDKRQYTKQSKSYYNGWEVDYHHGQQQQMPIHHQQQQHHHRQFSPHPQTY 448
           K+Y P+  KD +K    +Q +++Y+GW+ D+   QQQQ   HH + Q      S  P TY
Sbjct: 392 KTY-PFMSKDAEKMHQWRQGRAFYSGWDDDFQQQQQQQKHQHHHRYQ------SAIPHTY 444

Query: 449 YEKSCE-TNEIVFGAVQEQDGRREAVVIKAVDYGDPRYNHHNIRPRLNYMGYSNSY 503
           YE+S E TNEIVFGAVQEQDG+REA V+K VDYGD  YN  +IR R + MGYSN +
Sbjct: 445 YEQSYEKTNEIVFGAVQEQDGKREAAVVKPVDYGDSVYNQQSIRFRTSSMGYSNGF 500

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140207|ref|XP_002323476.1| predicted protein [Populus trichocarpa] gi|222868106|gb|EEF05237.1| predicted protein [Populus trichocarpa]

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 317/461 (68%), Positives = 366/461 (79%), Gaps = 21/461 (4%)

Query: 56  TAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSP 115
           +AVSS SM+KFEGGYTVETVF+GSK G+EP+SV VSPSGELL+LDSENSNIYKIST  S 
Sbjct: 1   SAVSSPSMMKFEGGYTVETVFDGSKLGIEPYSVEVSPSGELLLLDSENSNIYKISTQFSK 60

Query: 116 YSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKIS-DTGV 174
           Y RPKL+ GS EGY GHVDG+ R ARMNHPKGL VD+ GNIY+ADTMNMAIRKIS D GV
Sbjct: 61  YGRPKLITGSFEGYPGHVDGKLRDARMNHPKGLTVDEGGNIYVADTMNMAIRKISTDGGV 120

Query: 175 TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS 234
           TTIAGGKW+RG GHVDGPSEDAKFSNDFDVVY  SSCSLL+IDRG+QAIREIQLHDDDC+
Sbjct: 121 TTIAGGKWARGGGHVDGPSEDAKFSNDFDVVYSASSCSLLIIDRGSQAIREIQLHDDDCN 180

Query: 235 DNYDDTFHL----------GIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPRTQMKRGPP 284
             +DD FHL          G+ VLVAA FFGYMLALLQRRVQ +FSS         +GPP
Sbjct: 181 YPHDDCFHLDLDNILINIAGLAVLVAAGFFGYMLALLQRRVQILFSST------RGKGPP 234

Query: 285 AVAPYQRPPKSARPPLVPTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKP 344
             APYQ PP S RPP +P ED+  K +EG FGS+GRL+LNT STVGEIFGG+FS FRRKP
Sbjct: 235 K-APYQSPPMSVRPPFIPDEDEPVKSDEGLFGSLGRLILNTSSTVGEIFGGIFSGFRRKP 293

Query: 345 VHYQRQHQYQQRNVPPSTWHMQESYVIPDEDEPPPLETRTPTPKKSYHPYTIKDLDKRQY 404
           +HYQ Q  YQQ     +TW +Q+S+VIPDEDEPP +ETR+PT +K+Y P+  KD+++  +
Sbjct: 294 IHYQFQQHYQQPLKHSNTWPVQDSFVIPDEDEPPSIETRSPTSQKTY-PFMTKDVEQNHH 352

Query: 405 TKQSKSYYNGWEVDYHHGQQQQMPIHHQQQQHHHRQFS--PHPQTYYEKSCETNEIVFGA 462
            +Q++ YY+ W   YH  QQQQM +   +QQ         P+P+TYYEKSCETNEIVFGA
Sbjct: 353 LEQNQGYYSNWGGGYHQQQQQQMHLQRYKQQQQQHHRHYMPNPKTYYEKSCETNEIVFGA 412

Query: 463 VQEQDGRREAVVIKAVDYGDPRYNHHNIRPRLNYMGYSNSY 503
           VQEQ+GRREAVVIKAVDYGDPRYNHHNIRPR NY+GYS+SY
Sbjct: 413 VQEQNGRREAVVIKAVDYGDPRYNHHNIRPRFNYVGYSDSY 453

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573394|ref|XP_003554846.1| PREDICTED: uncharacterized protein LOC100793916 [Glycine max]

 Score =  594 bits (1531), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 334/535 (62%), Positives = 387/535 (72%), Gaps = 39/535 (7%)

Query: 1   MVRNLVVFLLILVFFFGGFSSVSASTPPAKIVAGIVSNVVSALVKWLWSLK----DSPKT 56
           M ++  V L   V     FS  SA+ PPAK+V G+VSNVVSAL+KWLWSL       P  
Sbjct: 1   MSKSCSVLLFGFVLVLCLFSPTSATPPPAKVVTGVVSNVVSALIKWLWSLSVKSTTKPGR 60

Query: 57  AVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPY 116
              S SM+KFE GY+VET+F+GS+ G+EP SV +SP+GE LVLDSENSNIYK+S S+S Y
Sbjct: 61  VQHSRSMVKFESGYSVETIFDGSQLGIEPHSVKISPNGEFLVLDSENSNIYKVSGSMSRY 120

Query: 117 SRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTT 176
           SRPKL+AGS EG  GH+DGRPR ARMNHPKGL VDDRGNIYIADT+NMAIRKISD GVTT
Sbjct: 121 SRPKLLAGSAEGNIGHIDGRPREARMNHPKGLTVDDRGNIYIADTLNMAIRKISDEGVTT 180

Query: 177 IAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS-- 234
           IAGGK     GHVDGPSEDAKFSNDFDVVYVGSSCSLLV+DRGN AIREIQLH DDC+  
Sbjct: 181 IAGGKRGYAGGHVDGPSEDAKFSNDFDVVYVGSSCSLLVVDRGNHAIREIQLHQDDCTSY 240

Query: 235 DNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPRTQMKRGPPAVAPYQRPP- 293
           D  D++F+LGI VLVAAAFFGYMLALLQ RV+AMFSS D       R P      QRPP 
Sbjct: 241 DEDDNSFNLGIVVLVAAAFFGYMLALLQWRVRAMFSSPD------VRAPFVAQQMQRPPP 294

Query: 294 --KSARPPLVPTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQRQH 351
             KS RPPL+P ED+FEK +EGFF S+GRL LN+G+ + EI GGLFS  +RK + Y +  
Sbjct: 295 TTKSVRPPLIPNEDEFEKQDEGFFVSLGRLFLNSGTCMSEILGGLFSGSKRKSLQYHQYQ 354

Query: 352 QYQQR-NVPPSTWHMQESYVIPDEDEPPP-LETRTPTPKKSYHPYTIKDLDKRQYTKQSK 409
           Q  Q  N  P+ W MQES+VIPDEDEPPP LET+TPTP+++Y P   K+L+K Q+ K S+
Sbjct: 355 QQYQYANRYPNAWPMQESFVIPDEDEPPPSLETKTPTPRETY-PIMTKELEKPQHFKPSR 413

Query: 410 SYYNGWE-VDYHHGQQQQMPIHHQQQQHH--------------------HRQFSPHPQTY 448
            Y   WE  DY    QQ    H Q QQ H                    H ++S  PQ Y
Sbjct: 414 GYLKRWEGGDYQEQHQQLQQHHQQHQQEHPKLQHQQHQQQVKLQHQHQVHTRYSSTPQGY 473

Query: 449 YEKSCETNEIVFGAVQEQDGRREAVVIKAVDYGDPRYNHHNIRPRLNYMGYSNSY 503
           YE++CETNEIVFGAVQE DGRREA+VIKAVDYGDP+Y HHNIRPRLNY+GYS+ Y
Sbjct: 474 YEQNCETNEIVFGAVQEHDGRREAMVIKAVDYGDPKYTHHNIRPRLNYVGYSHGY 528

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	507
TAIR|locus:2016189	509	AT1G70280 "AT1G70280" [Arabido	0.925	0.921	0.515	3.1e-115
TAIR|locus:2147780	754	AT5G14890 [Arabidopsis thalian	0.729	0.490	0.516	4.3e-113
TAIR|locus:2199862	545	AT1G23880 "AT1G23880" [Arabido	0.848	0.788	0.535	7e-109
TAIR|locus:2099357	493	AT3G14860 "AT3G14860" [Arabido	0.506	0.521	0.486	1.5e-60
TAIR|locus:2199872	400	AT1G23890 "AT1G23890" [Arabido	0.394	0.5	0.432	3e-37
UNIPROTKB|Q747P0	365	GSU3225 "NHL repeat domain lip	0.238	0.331	0.333	8.3e-05
TIGR_CMR|GSU_3225	365	GSU_3225 "NHL repeat domain pr	0.238	0.331	0.333	8.3e-05
TAIR|locus:2010728	1055	AT1G56500 [Arabidopsis thalian	0.351	0.168	0.276	0.00014
MGI|MGI:1914116	725	Nhlrc2 "NHL repeat containing	0.347	0.242	0.288	0.00039

TAIR|locus:2016189 AT1G70280 "AT1G70280" [Arabidopsis thaliana (taxid:3702)]

 Score = 1136 (405.0 bits), Expect = 3.1e-115, P = 3.1e-115
 Identities = 252/489 (51%), Positives = 312/489 (63%)

Query:    28 PAKIVAGIVSNVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFS 87
             PAKI+ G +SN  S+L+KWLWSLK + KT +++ SM+KFE GY+VETVF+GSK G+EP+S
Sbjct:    28 PAKILNGFISNHGSSLMKWLWSLKTTTKTTIATRSMVKFENGYSVETVFDGSKLGIEPYS 87

Query:    88 VAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKG 147
             + V P+GELL+LDSENSNIYKIS+SLS YSRP+LV GSPEGY GHVDGR R A++NHPKG
Sbjct:    88 IEVLPNGELLILDSENSNIYKISSSLSLYSRPRLVTGSPEGYPGHVDGRLRDAKLNHPKG 147

Query:   148 LAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYV 207
             L VDDRGNIY+ADT+N AIRKIS+ GVTTIAGGK  R  GHVDGPSEDAKFSNDFDVVYV
Sbjct:   148 LTVDDRGNIYVADTVNNAIRKISEGGVTTIAGGKTVRNGGHVDGPSEDAKFSNDFDVVYV 207

Query:   208 GSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQA 267
             GSSCSLLVIDRGN+AIREIQLH DDC+  Y   F LGI VLVAA FFGYMLALLQRRV +
Sbjct:   208 GSSCSLLVIDRGNKAIREIQLHFDDCAYQYGSGFPLGIAVLVAAGFFGYMLALLQRRVGS 267

Query:   268 MFSSKDDPRTQMKRGPPAVAPYQRPPKSARPPLVPTEDD-FEKPEEGFFGSIGRLVLNTG 326
             + SS +D   +M    P     Q+P K +RP L+P  D+  EK EE F  S+G+LV N  
Sbjct:   268 IVSSHNDQ--EMFEADPD----QKPMKHSRPSLIPAGDEQLEKQEETFVVSLGKLVSNAW 321

Query:   327 STVGEIFGGLFSMFRRKPVXXXXXXXXXXXNVPPSTWHMQESYVIXXXXXXXXXXXXXXX 386
              +V EI     +    +                P  W +QES+VI               
Sbjct:   322 ESVMEILRKKQTGTSFQQYHGTTKQSAAFSTSTP--WPIQESFVIRDEDGPPPVEPRNPT 379

Query:   387 XKKSYHPYTIKDLDKRQYTKQSKSYYNGWEVDY------XXXXXXXXXXXXXXXXXXXXX 440
              +K+Y  +  KD +K Q  +QS+++Y+ W+ ++                           
Sbjct:   380 PRKTY-AFMSKDAEKMQQLRQSRAFYSSWDAEFPNQQQQQQKQHQKHQHQQQQQQQHRRH 438

Query:   441 XXXXXXTYYEKSCE-TNEIVFGAVQEQDGRREAVVI-KAVDYGDPRYNHHNIRPRLNYMG 498
                   TYYE+  E +NEIVFGAVQEQ  +R A    K ++ GD   N  N +  L+Y  
Sbjct:   439 YSSIPHTYYEQDSEKSNEIVFGAVQEQSSKRVAKPKPKPIESGDQMNN--NTQQNLHYRS 496

Query:   499 YSNSYSQVY 507
             +S SY   Y
Sbjct:   497 HSVSYPYGY 505

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

TAIR|locus:2147780 AT5G14890 [Arabidopsis thaliana (taxid:3702)]

 Score = 951 (339.8 bits), Expect = 4.3e-113, Sum P(2) = 4.3e-113
 Identities = 208/403 (51%), Positives = 268/403 (66%)

Query:    27 PPAKIVAGIVSNVVSALVKWLWSLKDSP------KTAVSSSSMIKFEGGYTVETVFEGSK 80
             PP KIV+G+V+NV S L KWLWSL+ S       K+ VSS SM+K+E GY +ETVF+GSK
Sbjct:    29 PPVKIVSGLVTNVASILWKWLWSLQTSTTTTTTTKSGVSSRSMVKYESGYNMETVFDGSK 88

Query:    81 FGMEPFSVAVSPSG-ELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRG 139
              G+EP+++ VSP+G EL+VLDSENSNI+KIS  LS Y +PKL++GS EGY GHVDG+ + 
Sbjct:    89 LGIEPYAIEVSPNGGELIVLDSENSNIHKISMPLSRYGKPKLLSGSQEGYTGHVDGKLKE 148

Query:   140 ARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIA-GGKWSRGVGHVDGPSEDAKF 198
             ARMN P+GLA+DDRGNIY+ADT+NMAIRKISD GV+TIA GG+WS G        E  +F
Sbjct:   149 ARMNRPRGLAMDDRGNIYVADTINMAIRKISDDGVSTIAAGGRWSGG-----SKEESMRF 203

Query:   199 SNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDT--FHLGIFVLVAAAFFGY 256
             S+DFD++YV SSCSLLVIDRGNQ I+EIQLHD DCS    DT   HLG  +LVAA FFGY
Sbjct:   204 SDDFDLIYVSSSCSLLVIDRGNQLIKEIQLHDHDCSQPEPDTDSLHLGTALLVAAVFFGY 263

Query:   257 MLALLQRRVQAMFSSKD-DPRTQMKRGPPAV--APYQRPPKSARPPLVPTEDDFEKPEEG 313
             MLALL RRV+++FSS   D +++     P++  APYQR P+  R PL+P + + EK EEG
Sbjct:   264 MLALLVRRVRSLFSSSSHDTKSKRHVATPSMTMAPYQRYPRPVRQPLIPPQHESEK-EEG 322

Query:   314 FFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVXXXXXXXXXXXNVPPSTWHMQESYVIXX 373
             F GS+G+LV+ TGS+V E+  G  ++    P               P+ W +QES+ I  
Sbjct:   323 FLGSLGKLVVKTGSSVSEMMSGSRNVI--PP-----NFHQYHHQQEPNQWPVQESFAIPE 375

Query:   374 XXXXXXXXXXXXXXKKSYHPYTIKDLDKRQYTKQSKSYYNGWE 416
                                PY      + Q T Q++SYY  ++
Sbjct:   376 EDGPPALEPRSGTNPDK--PYL-----RAQGTNQNRSYYQDYD 411

GO:0005576 "extracellular region" evidence=ISM

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2199862 AT1G23880 "AT1G23880" [Arabidopsis thaliana (taxid:3702)]

 Score = 1076 (383.8 bits), Expect = 7.0e-109, P = 7.0e-109
 Identities = 240/448 (53%), Positives = 288/448 (64%)

Query:    26 TPPAKIVAGIVSNVVSALVKWLWSL--KDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGM 83
             T PAKIV   +SN  ++L+KWLWSL  K + KTAV + SM+KFE GY+VETV +GSK G+
Sbjct:    86 TSPAKIVNSFISNHGTSLLKWLWSLSFKTTTKTAVPTKSMVKFENGYSVETVLDGSKLGI 145

Query:    84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMN 143
             EP+S+ V  +GELL+LDS+NSNIY+IS+SLS YSRP+LV GSPEGY GHVDGR R AR+N
Sbjct:   146 EPYSIQVLSNGELLILDSQNSNIYQISSSLSLYSRPRLVTGSPEGYPGHVDGRLRDARLN 205

Query:   144 HPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFD 203
             +PKGL VDDRGNIY+ADT+N AIRKIS+ GVTTIAGGK  RG GHVDGPSEDAKFSNDFD
Sbjct:   206 NPKGLTVDDRGNIYVADTVNNAIRKISEAGVTTIAGGKMVRGGGHVDGPSEDAKFSNDFD 265

Query:   204 VVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHLGIFVLVAAAFFGYMLALLQR 263
             VVY+GSSCSLLVIDRGNQAIREIQLH DDC+D Y   F LGI VLVAA FFGYMLALLQR
Sbjct:   266 VVYLGSSCSLLVIDRGNQAIREIQLHFDDCADQYGSGFPLGIAVLVAAVFFGYMLALLQR 325

Query:   264 RVQAMFSSKDDPRTQMKRGPPAVAPYQRPPKSARPPLVPTEDDFEKPEEGFFGSIGRLVL 323
             R+ ++ S   D          AV P Q P K  RPPL+ T D+ EK EE F G++   + 
Sbjct:   326 RLSSIVSYHTDQEVF-----EAV-PDQDPIKPVRPPLILTGDEQEKQEESFLGTLQIFIS 379

Query:   324 NTGSTVGEIFGGLFSMFRRKPVXXXXXXXXXXXNVPPST--WHMQESYVIXXXXXXXXXX 381
             N      E+F G+F   R+K             +   ST  W +QES+VI          
Sbjct:   380 NAWVFSVELFSGMFPGLRKKQTVGLNFNHQETKHSAFSTTSWPIQESFVIHNKDEPPPVE 439

Query:   382 XXXXXXKKSYHPYTIKDL-DKRQYTKQSKSYYNGWEVDYXXXXXXXXXXXXXXXXXXXXX 440
                    K Y P+  KD  +K Q  +QS++ Y   + ++                     
Sbjct:   440 SRNATPGKIY-PFMSKDATEKMQQLRQSRALYRSLDAEFLQEQQQEKHQQYHHRHHSTIP 498

Query:   441 XXXXXXTYYEKSCE-TNEIVFGAVQEQD 467
                   T YE+S E TNEIVFG  QEQD
Sbjct:   499 Y-----TLYEQSSEKTNEIVFGPGQEQD 521

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2099357 AT3G14860 "AT3G14860" [Arabidopsis thaliana (taxid:3702)]

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 128/263 (48%), Positives = 172/263 (65%)

Query:    33 AGIVSNVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSP 92
             +G +   +S+++KW  +   S K + S +++++FE GY VETV EG+  G+ P+ + VS 
Sbjct:    42 SGSLIKHMSSVLKW--TTGSSSKLSQSDTNVLQFENGYLVETVVEGNDIGVVPYKIRVSD 99

Query:    93 SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD 152
              GEL  +D  NSNI KI+  LS YSR +LVAGS +G  GH DG+P  AR NHP+G+ +DD
Sbjct:   100 DGELYAVDELNSNIMKITPPLSQYSRGRLVAGSFQGKTGHADGKPSEARFNHPRGVTMDD 159

Query:   153 RGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCS 212
             +GN+Y+ADT+N+AIRKI D+GVTTIAGGK S   G+ DGPSEDAKFSNDFDVVYV  +CS
Sbjct:   160 KGNVYVADTLNLAIRKIGDSGVTTIAGGK-SNIAGYRDGPSEDAKFSNDFDVVYVRPTCS 218

Query:   213 LLVIDRGNQAIREIQLHDDDCSDNYDDTFHL-GIFVLVAAAFFGYMLALLQRRVQAMFSS 271
             LLVIDRGN A+R+I L ++DC    D +  L  I +++ A   GY   +LQ+     F S
Sbjct:   219 LLVIDRGNAALRQISLSEEDCDYQDDSSISLTDILLVIGAVLIGYATCMLQQGFGNSFFS 278

Query:   272 KDD--PRTQMKRGPPAVAPYQRP 292
             K      T  +   P      RP
Sbjct:   279 KTQVGSETSYEEEHPGKEKLSRP 301

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2199872 AT1G23890 "AT1G23890" [Arabidopsis thaliana (taxid:3702)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 90/208 (43%), Positives = 122/208 (58%)

Query:    61 SSMIKFEGGYTVETVFEGSKFGMEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRP 119
             S  I  E GY V TV +G K G+ P+++   P S  L+VLDS  S  Y  S  LS  S  
Sbjct:    20 SGKIVLEEGYEVTTVVDGHKSGLNPYTIHALPGSSNLIVLDSSGSTFYTTSFPLSVDSVI 79

Query:   120 KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG-VTTIA 178
                AG  +G  GHVDG+   +R + P+G AVD +GN+Y+AD  N AIRKIS +G VTTIA
Sbjct:    80 NRFAG--DGSSGHVDGKAGNSRFSKPRGFAVDAKGNVYVADKSNKAIRKISSSGSVTTIA 137

Query:   179 GGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYD 238
             GG  S+  GH DGP+++A FS+DF++ +V   C LLV D GN+ IR+I L ++DC +N  
Sbjct:   138 GGI-SKAFGHRDGPAQNATFSSDFEITFVPQRCCLLVSDHGNEMIRQINLKEEDCLENSH 196

Query:   239 D---TFHLGIFVLVAAAFFGYMLALLQR 263
                 T+ L    +V +   G  +    R
Sbjct:   197 SNLGTYSLWSIGIVLSCILGVAIGFAVR 224

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q747P0 GSU3225 "NHL repeat domain lipoprotein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 124 (48.7 bits), Expect = 8.3e-05, P = 8.3e-05
 Identities = 48/144 (33%), Positives = 66/144 (45%)

Query:    73 ETVFEGSKFGMEP--FS----VAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSP 126
             ET+  G   GMEP  F+    +AV   G LLV DS NS I +I T+           G P
Sbjct:   215 ETLRIGGS-GMEPGAFNFPTDLAVMADGRLLVTDSLNSRI-QIFTA----------DGKP 262

Query:   127 EGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGV 186
              G +G     P   R   PKG+AVD  G+IY+ D+    ++   +TG   +A G      
Sbjct:   263 AGSFGEAGDTP--GRFTRPKGVAVDSEGHIYVCDSQQDMVQIFDETGRLLLAFGDKGSLP 320

Query:   187 GHVDGPSEDAKFSNDFDVVYVGSS 210
             G    PS     +ND  ++YV  +
Sbjct:   321 GQFWMPS-GIHIAND--MIYVSDT 341

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_3225 GSU_3225 "NHL repeat domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 124 (48.7 bits), Expect = 8.3e-05, P = 8.3e-05
 Identities = 48/144 (33%), Positives = 66/144 (45%)

Query:    73 ETVFEGSKFGMEP--FS----VAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSP 126
             ET+  G   GMEP  F+    +AV   G LLV DS NS I +I T+           G P
Sbjct:   215 ETLRIGGS-GMEPGAFNFPTDLAVMADGRLLVTDSLNSRI-QIFTA----------DGKP 262

Query:   127 EGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGV 186
              G +G     P   R   PKG+AVD  G+IY+ D+    ++   +TG   +A G      
Sbjct:   263 AGSFGEAGDTP--GRFTRPKGVAVDSEGHIYVCDSQQDMVQIFDETGRLLLAFGDKGSLP 320

Query:   187 GHVDGPSEDAKFSNDFDVVYVGSS 210
             G    PS     +ND  ++YV  +
Sbjct:   321 GQFWMPS-GIHIAND--MIYVSDT 341

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2010728 AT1G56500 [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 0.00014, P = 0.00014
 Identities = 55/199 (27%), Positives = 86/199 (43%)

Query:    46 WLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPS-GELLVLDSENS 104
             W +S+ D      S +   +   G T +T    + F  +P  +++ P   E  + DSE+S
Sbjct:   707 WEYSVLDGITRVFSGNGYERNLNGSTPQT----TSFA-QPSGISLGPDLKEAYIADSESS 761

Query:   105 NIYKISTSLSPYSRPKLVAGSP---EGYY--GHVDGRPRGARMNHPKGLAVDDRGNIYIA 159
             +I  +       SR  L  G P   E  +  G  DG      + HP G+   + G IY+ 
Sbjct:   762 SIRALDLQTGG-SR-LLAGGDPYFSENLFKFGDNDGVGAEVLLQHPLGVLCANDGQIYLT 819

Query:   160 DTMNMAIRKISDTG--VTTIAG-GKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVI 216
             D+ N  I+K+      V T+AG GK     G  DG  + A+ S    +  +  +  L V 
Sbjct:   820 DSYNHKIKKLDPVTKRVVTLAGTGK----AGFKDGKVKGAQLSEPAGLA-ITENGRLFVA 874

Query:   217 DRGNQAIREIQLHDDDCSD 235
             D  N  IR I L+  + S+
Sbjct:   875 DTNNSLIRYIDLNKGEDSE 893

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

MGI|MGI:1914116 Nhlrc2 "NHL repeat containing 2" [Mus musculus (taxid:10090)]

 Score = 122 (48.0 bits), Expect = 0.00039, P = 0.00039
 Identities = 58/201 (28%), Positives = 92/201 (45%)

Query:    47 LWSLK-DS---PKTA-VSSSSMIKFEGGYTVETVFEG--SKFGM-EPFSVAVS---PSGE 95
             +W+L  DS   PK + +   + I+F G    E        K G  +P  +A++   P   
Sbjct:   366 IWALLLDSGTLPKKSDLKKGTCIRFAGSGNEENRNNAYPHKAGFAQPSGLALASEEPWSC 425

Query:    96 LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGY----YGHVDGRPRGARMNHPKGLAVD 151
             L V DSE+S +  +S  L   +   LV G  +      +G VDG    A++ HP G+A D
Sbjct:   426 LFVADSESSTVRTVS--LRDGAVKHLVGGERDPMNLFAFGDVDGAGINAKLQHPLGVAWD 483

Query:   152 D-RGNIYIADTMNMAIRKISDT--GVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVG 208
             + R  +Y+AD+ N  I+ +     G TT+AG   +           ++ F N+   + +G
Sbjct:   484 EERQVLYVADSYNHKIKVVDPKTKGCTTLAG---TGDASDASSSFAESAF-NEPGGLCIG 539

Query:   209 SSCSLL-VIDRGNQAIREIQL 228
              S  LL V D  N  I+ + L
Sbjct:   540 ESGRLLYVADTNNHQIKVMDL 560


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.135   0.405    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      507       432   0.00086  118 3  11 22  0.42    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  619 (66 KB)
  Total size of DFA:  276 KB (2144 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  35.78u 0.09s 35.87t   Elapsed:  00:00:02
  Total cpu time:  35.78u 0.09s 35.87t   Elapsed:  00:00:02
  Start:  Fri May 10 18:11:38 2013   End:  Fri May 10 18:11:40 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00020773001 SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (542 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	507
PLN02919	1057	PLN02919, PLN02919, haloacid dehalogenase-like hyd	8e-08
pfam01436	28	pfam01436, NHL, NHL repeat	1e-04

>gnl|CDD|215497 PLN02919, PLN02919, haloacid dehalogenase-like hydrolase family protein

 Score = 54.9 bits (132), Expect = 8e-08
 Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 18/162 (11%)

Query: 84  EPFSVAVSPS-GELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGY------YGHVDGR 136
           +P  +++SP   EL + DSE+S+I  +          +L+AG    +      +G  DG 
Sbjct: 741 QPSGISLSPDLKELYIADSESSSIRALDLKTGG---SRLLAGGDPTFSDNLFKFGDHDGV 797

Query: 137 PRGARMNHPKGLAVDDRGNIYIADTMNMAIRKI--SDTGVTTIAG-GKWSRGVGHVDGPS 193
                + HP G+     G IY+AD+ N  I+K+  +   VTT+AG GK     G  DG +
Sbjct: 798 GSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGK----AGFKDGKA 853

Query: 194 EDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD 235
             A+ S    +  +G +  L V D  N  IR + L+  + ++
Sbjct: 854 LKAQLSEPAGLA-LGENGRLFVADTNNSLIRYLDLNKGEAAE 894

Length = 1057

>gnl|CDD|110440 pfam01436, NHL, NHL repeat

 Score = 38.5 bits (91), Expect = 1e-04
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 143 NHPKGLAVDDRGNIYIADTMNMAIRKI 169
           N P G+AVD  G++Y+AD+ N  ++  
Sbjct: 2   NRPHGVAVDSDGDVYVADSENHRVQVF 28

The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies. It is about 40 residues long and resembles the WD repeat pfam00400. The repeats have a catalytic activity in bovine PAM (peptidyl-glycine alpha-amidating monooxygenase), proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localised to the repeats. Human E3 ubiquitin-protein ligase TRIM32 interacts with the activation domain of Tat. This interaction is me diated by the NHL repeats. Length = 28

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	507
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.82
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.7
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	99.47
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	99.46
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.34
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.22
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.82
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.71
COG3391	381	Uncharacterized conserved protein [Function unknow	98.6
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	98.52
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	98.5
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	98.44
COG3391	381	Uncharacterized conserved protein [Function unknow	98.33
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	98.32
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	98.3
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.29
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	98.29
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.25
PRK11028	330	6-phosphogluconolactonase; Provisional	98.2
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	98.16
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	98.09
PRK11028	330	6-phosphogluconolactonase; Provisional	97.99
KOG1214	1289	consensus Nidogen and related basement membrane pr	97.98
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	97.88
KOG1214	1289	consensus Nidogen and related basement membrane pr	97.88
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	97.66
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	97.54
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	97.39
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	97.38
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	97.33
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.23
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.22
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.07
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.76
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	96.75
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.64
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	96.61
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.6
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	96.5
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	96.49
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	96.48
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.29
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.25
PF13449	326	Phytase-like: Esterase-like activity of phytase	96.14
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	96.04
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	95.99
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	95.97
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	95.3
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	95.13
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.89
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	94.86
COG3211	616	PhoX Predicted phosphatase [General function predi	94.53
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	94.49
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.48
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	94.34
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.29
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	93.62
COG4946	668	Uncharacterized protein related to the periplasmic	93.5
KOG0266	456	consensus WD40 repeat-containing protein [General	93.5
PF13449	326	Phytase-like: Esterase-like activity of phytase	93.23
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	92.55
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	92.41
PRK02888	635	nitrous-oxide reductase; Validated	92.25
KOG1215	877	consensus Low-density lipoprotein receptors contai	91.78
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	91.38
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	91.33
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	91.27
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	90.57
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	90.48
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	90.0
KOG3567	501	consensus Peptidylglycine alpha-amidating monooxyg	89.72
KOG0289	506	consensus mRNA splicing factor [General function p	89.23
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	88.34
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	88.33
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	88.08
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	87.22
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	86.78
PTZ00421	493	coronin; Provisional	86.59
PRK04792	448	tolB translocation protein TolB; Provisional	86.17
KOG0266	456	consensus WD40 repeat-containing protein [General	85.91
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	85.77
PRK02888	635	nitrous-oxide reductase; Validated	85.39
KOG1215	877	consensus Low-density lipoprotein receptors contai	85.27
KOG0772	641	consensus Uncharacterized conserved protein, conta	84.08
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	83.5
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	82.42
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	82.25
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	81.84
KOG0318	603	consensus WD40 repeat stress protein/actin interac	81.7
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	80.95
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	80.58
COG3211	616	PhoX Predicted phosphatase [General function predi	80.38

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.82  E-value=9e-19  Score=204.83  Aligned_cols=265  Identities=22%  Similarity=0.239  Sum_probs=178.4

Q ss_pred             ceEeEEEecCCcEEEEEeCCCCeEE--ecCcceEeeCCeeeEEeecCCCCCCCeeEEEEcCCCc-EEEEeCCCCeEEEEe
Q 010579           34 GIVSNVVSALVKWLWSLKDSPKTAV--SSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDSENSNIYKIS  110 (507)
Q Consensus        34 G~l~~va~ag~~~I~~~d~~t~~i~--aG~~~~~~~~G~~~~~~~~G~~~~~~P~gIaVd~dG~-LYVaDs~n~rI~ki~  110 (507)
                      +.++ +++.++++||+++..++.+.  .|.+......|.     ......+..|.+|+++++|. |||+|..+++|++|+
T Consensus       695 g~Ly-Vad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~-----~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D  768 (1057)
T PLN02919        695 EKVY-IAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGS-----SGTSTSFAQPSGISLSPDLKELYIADSESSSIRALD  768 (1057)
T ss_pred             CeEE-EEECCCCeEEEEECCCCeEEEEecCCccccCCCC-----ccccccccCccEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            4455 88899999999998776543  221111101110     01122346899999999886 999999999999999


Q ss_pred             CCCCCCCccEEEecCCC------CccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCCeEEEEcCCC--cEEEecCcc
Q 010579          111 TSLSPYSRPKLVAGSPE------GYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG--VTTIAGGKW  182 (507)
Q Consensus       111 ~~g~~~g~i~~vaG~~~------G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~rIrk~d~~G--VstIaGG~~  182 (507)
                      .++   +...+++|...      ..+|..+|....+.|++|.||++|++|+|||||+.|++|++||.++  +.+++|.. 
T Consensus       769 ~~t---g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G-  844 (1057)
T PLN02919        769 LKT---GGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTG-  844 (1057)
T ss_pred             CCC---CcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccC-
Confidence            873   44455554321      1234446666677899999999999999999999999999999654  77887632 


Q ss_pred             cCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCcee---eC--CCCCccceEE-------EE-e
Q 010579          183 SRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS---DN--YDDTFHLGIF-------VL-V  249 (507)
Q Consensus       183 g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~---~~--~~~G~p~gIa-------~~-~  249 (507)
                       . .|+.||....+.|+.|.+|+ ++.+|+|||+|.+|++|++|++.+....   ..  .+...|..+.       .. .
T Consensus       845 -~-~G~~dG~~~~a~l~~P~GIa-vd~dG~lyVaDt~Nn~Irvid~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  921 (1057)
T PLN02919        845 -K-AGFKDGKALKAQLSEPAGLA-LGENGRLFVADTNNSLIRYLDLNKGEAAEILTLELKGVQPPRPKSKSLKRLRRRSS  921 (1057)
T ss_pred             -C-cCCCCCcccccccCCceEEE-EeCCCCEEEEECCCCEEEEEECCCCccceeEeeccccccCCCCcccchhhhhhccc
Confidence             1 35567878889999999998 4788999999999999999999886541   11  1111121111       00 0


Q ss_pred             cceeEEehhHHHhcccCcccccccCCccccCCCCCCCCCCCCCCCCC-CCCCcCCCCCCCCCCCCCccchhhh
Q 010579          250 AAAFFGYMLALLQRRVQAMFSSKDDPRTQMKRGPPAVAPYQRPPKSA-RPPLVPTEDDFEKPEEGFFGSIGRL  321 (507)
Q Consensus       250 ~a~~~gy~~~~lq~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  321 (507)
                      ...-+-...+.. .+-|.+.+..+.++   ...|++++|.+|.++.. .+.++      .++-+|++.+=|+-
T Consensus       922 ~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  984 (1057)
T PLN02919        922 ADTQVIKVDGVT-SLEGDLQLKISLPP---GYHFSKEARSKFEVEVEPENAVD------IDPDEGTLSPDGRA  984 (1057)
T ss_pred             ccCceeecCCcc-cccceEEEEEECCC---CCccCcCCCceeEEEeccCCceE------ecCCCceECCCCeE
Confidence            111122333333 45567777777765   89999999999998744 22222      45556777655544

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.70  E-value=1.4e-15  Score=178.30  Aligned_cols=210  Identities=17%  Similarity=0.250  Sum_probs=144.9

Q ss_pred             EEEecCCcEEEEEeCCCCeEE--ecCcceEeeCCeeeEEeecC-CCCCCCeeEEEEcC-CCcEEEEeCCCCeEEEEeCCC
Q 010579           38 NVVSALVKWLWSLKDSPKTAV--SSSSMIKFEGGYTVETVFEG-SKFGMEPFSVAVSP-SGELLVLDSENSNIYKISTSL  113 (507)
Q Consensus        38 ~va~ag~~~I~~~d~~t~~i~--aG~~~~~~~~G~~~~~~~~G-~~~~~~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g  113 (507)
                      .+++..++.|.+++..++.+.  +|.+.....    ..+...+ ...++.|++|++++ +|.|||+|..+++|++++.. 
T Consensus       639 YVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~----~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~-  713 (1057)
T PLN02919        639 YVADTENHALREIDFVNETVRTLAGNGTKGSD----YQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNIS-  713 (1057)
T ss_pred             EEEeCCCceEEEEecCCCEEEEEeccCcccCC----CCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECC-
Confidence            388888899999988776543  332211110    0000001 12256899999999 78899999999999999987 


Q ss_pred             CCCCccEEEecCCCCccccCCC-CcccccCCCcceEEEcCCCC-EEEEeCCCCeEEEEcCC-C-cEEEecCccc-----C
Q 010579          114 SPYSRPKLVAGSPEGYYGHVDG-RPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDT-G-VTTIAGGKWS-----R  184 (507)
Q Consensus       114 ~~~g~i~~vaG~~~G~~G~~dG-~~~~a~fn~P~GIaVd~dGn-IYVADs~N~rIrk~d~~-G-VstIaGG~~g-----~  184 (507)
                        .+.+.+++|.+  .....+| ....+.|+.|.||+++++|+ |||||+.|++|+++|.+ + +.+++|+...     .
T Consensus       714 --~g~v~~~~G~G--~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~  789 (1057)
T PLN02919        714 --DGVTRVFSGDG--YERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLF  789 (1057)
T ss_pred             --CCeEEEEecCC--ccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccc
Confidence              36667777653  2221122 22345789999999999987 99999999999999953 3 6666654321     1


Q ss_pred             CCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceeeCCCC---------------CccceEEEEe
Q 010579          185 GVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDD---------------TFHLGIFVLV  249 (507)
Q Consensus       185 ~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~~~~~---------------G~p~gIa~~~  249 (507)
                      ..|..+|....+.|..|.+|++ +.+|.|||+|.+|++|++|++.+..+....+.               ..|.||++..
T Consensus       790 ~fG~~dG~g~~~~l~~P~Gvav-d~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~  868 (1057)
T PLN02919        790 KFGDHDGVGSEVLLQHPLGVLC-AKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE  868 (1057)
T ss_pred             cccCCCCchhhhhccCCceeeE-eCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC
Confidence            1334456666778999999985 78899999999999999999988776542221               1477888865


Q ss_pred             c-ceeEEeh
Q 010579          250 A-AAFFGYM  257 (507)
Q Consensus       250 ~-a~~~gy~  257 (507)
                      . ..|+.+.
T Consensus       869 dG~lyVaDt  877 (1057)
T PLN02919        869 NGRLFVADT  877 (1057)
T ss_pred             CCCEEEEEC
Confidence            3 3455443

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=99.47  E-value=3e-13  Score=153.53  Aligned_cols=191  Identities=20%  Similarity=0.323  Sum_probs=136.9

Q ss_pred             ecceEeEEEecCCcEEEEEeCCCC-------eEEecCcceEeeCCeee-EEeecCCCCCCCeeEEEEcCCCcEEEEeCCC
Q 010579           32 VAGIVSNVVSALVKWLWSLKDSPK-------TAVSSSSMIKFEGGYTV-ETVFEGSKFGMEPFSVAVSPSGELLVLDSEN  103 (507)
Q Consensus        32 vsG~l~~va~ag~~~I~~~d~~t~-------~i~aG~~~~~~~~G~~~-~~~~~G~~~~~~P~gIaVd~dG~LYVaDs~n  103 (507)
                      ++|.++ +.+...++||++.....       ++++|.+..|....-.+ .+...-.+.+..|.||+||.+|+||++|.. 
T Consensus       417 vdgtly-vSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYfaD~t-  494 (1899)
T KOG4659|consen  417 VDGTLY-VSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYFADGT-  494 (1899)
T ss_pred             cCceEE-ecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcEEEeccc-
Confidence            467777 77788899999864333       36667666665322211 112233455689999999999999999975 


Q ss_pred             CeEEEEeCCCCCCCccEEEecCCCC------cccc------------------C------------------------CC
Q 010579          104 SNIYKISTSLSPYSRPKLVAGSPEG------YYGH------------------V------------------------DG  135 (507)
Q Consensus       104 ~rI~ki~~~g~~~g~i~~vaG~~~G------~~G~------------------~------------------------dG  135 (507)
                       +|++|+.+    |.++++.|+..-      |.+.                  .                        -|
T Consensus       495 -~IR~iD~~----giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~nvvlrit~~~rV~Ii~G  569 (1899)
T KOG4659|consen  495 -RIRVIDTT----GIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTNVVLRITVVHRVRIILG  569 (1899)
T ss_pred             -EEEEeccC----ceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeecceEEEEccCccEEEEcC
Confidence             99999987    667777665311      1000                  0                        01


Q ss_pred             C----------------cccccCCCcceEEEcCCCCEEEEeCCC---CeEEEEcCCC-cEEEecCcccCC------C---
Q 010579          136 R----------------PRGARMNHPKGLAVDDRGNIYIADTMN---MAIRKISDTG-VTTIAGGKWSRG------V---  186 (507)
Q Consensus       136 ~----------------~~~a~fn~P~GIaVd~dGnIYVADs~N---~rIrk~d~~G-VstIaGG~~g~~------~---  186 (507)
                      .                +....+-.|..|+|..+|.||||++..   +|||+++++| +..+||+++.-.      +   
T Consensus       570 rP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcf  649 (1899)
T KOG4659|consen  570 RPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCF  649 (1899)
T ss_pred             CccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccc
Confidence            1                123445667899999999999999874   6789999999 889998765311      1   


Q ss_pred             CCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCC
Q 010579          187 GHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  230 (507)
Q Consensus       187 G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~  230 (507)
                      ...|..+..|.|+.|..+| +.++|.|||||.+|-|||+++...
T Consensus       650 s~~~~~At~A~lnsp~ala-VsPdg~v~IAD~gN~rIr~Vs~~~  692 (1899)
T KOG4659|consen  650 SLRDVAATQAKLNSPYALA-VSPDGDVIIADSGNSRIRKVSARM  692 (1899)
T ss_pred             cccchhhhccccCCcceEE-ECCCCcEEEecCCchhhhhhhhcc
Confidence            2334468899999999998 689999999999999999998654

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=99.46  E-value=1.5e-12  Score=148.04  Aligned_cols=167  Identities=26%  Similarity=0.330  Sum_probs=120.5

Q ss_pred             eCCeeeEEeecCCCCCCCeeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCC--CCccEEEecCCCCc------cccCCCCc
Q 010579           67 EGGYTVETVFEGSKFGMEPFSVAVSP-SGELLVLDSENSNIYKISTSLSP--YSRPKLVAGSPEGY------YGHVDGRP  137 (507)
Q Consensus        67 ~~G~~~~~~~~G~~~~~~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~--~g~i~~vaG~~~G~------~G~~dG~~  137 (507)
                      .+|.......-+...-.+-+.||++| ||.|||+|+..++|+|+......  .....+++|.++-|      ||+ .+.+
T Consensus       391 ~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGD-GalA  469 (1899)
T KOG4659|consen  391 QDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGD-GALA  469 (1899)
T ss_pred             CCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCc-chhc
Confidence            34443333333333445788999999 99999999999999999743222  34567899988654      553 5568


Q ss_pred             ccccCCCcceEEEcCCCCEEEEeCCCCeEEEEcCCC-cEEEecCcccC--CCCCCCC-CccCccCCCCceEEEEcCCCeE
Q 010579          138 RGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG-VTTIAGGKWSR--GVGHVDG-PSEDAKFSNDFDVVYVGSSCSL  213 (507)
Q Consensus       138 ~~a~fn~P~GIaVd~dGnIYVADs~N~rIrk~d~~G-VstIaGG~~g~--~~G~~dg-~~~~a~f~~P~gIa~vd~~G~L  213 (507)
                      .+|+|..|+||++|.+|+||+||..  +||++|.+| |+|+.|...-.  .-.+... ...+.+|.+|.++++.+-+++|
T Consensus       470 ~dA~L~~PkGIa~dk~g~lYfaD~t--~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl  547 (1899)
T KOG4659|consen  470 QDAQLIFPKGIAFDKMGNLYFADGT--RIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSL  547 (1899)
T ss_pred             ccceeccCCceeEccCCcEEEeccc--EEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeE
Confidence            8999999999999999999999965  499999999 78886643211  1112222 2345678999999988889999


Q ss_pred             EEEeC-------CCCeEEEEECCCCceeeC
Q 010579          214 LVIDR-------GNQAIREIQLHDDDCSDN  236 (507)
Q Consensus       214 yVaD~-------gn~rIr~I~l~~~~~~~~  236 (507)
                      ||.|.       -+++|+.|.-....|...
T Consensus       548 ~Vld~nvvlrit~~~rV~Ii~GrP~hC~~a  577 (1899)
T KOG4659|consen  548 LVLDTNVVLRITVVHRVRIILGRPTHCDLA  577 (1899)
T ss_pred             EEeecceEEEEccCccEEEEcCCccccccC
Confidence            99995       366677666666667653

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.34  E-value=7.5e-11  Score=115.89  Aligned_cols=132  Identities=23%  Similarity=0.269  Sum_probs=96.2

Q ss_pred             CCCCeeEEEEcCCCcEEEEeCCC--------CeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC
Q 010579           81 FGMEPFSVAVSPSGELLVLDSEN--------SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD  152 (507)
Q Consensus        81 ~~~~P~gIaVd~dG~LYVaDs~n--------~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~  152 (507)
                      ....|+++++|++|+|||+|...        ++|++++++    +.+..+..                .|..|+||++++
T Consensus        84 ~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~----~~~~~~~~----------------~~~~pNGi~~s~  143 (246)
T PF08450_consen   84 PFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD----GKVTVVAD----------------GLGFPNGIAFSP  143 (246)
T ss_dssp             CTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT----SEEEEEEE----------------EESSEEEEEEET
T ss_pred             ccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC----CeEEEEec----------------CcccccceEECC
Confidence            55789999999999999999875        579999986    44444432                367899999999


Q ss_pred             CCC-EEEEeCCCCeEEEEcCC--C--c---EEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEE
Q 010579          153 RGN-IYIADTMNMAIRKISDT--G--V---TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIR  224 (507)
Q Consensus       153 dGn-IYVADs~N~rIrk~d~~--G--V---stIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr  224 (507)
                      +|+ |||+|+.+++|++++.+  +  +   .+++....              ....|.|++ +|.+|+|||++.++++|+
T Consensus       144 dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~--------------~~g~pDG~~-vD~~G~l~va~~~~~~I~  208 (246)
T PF08450_consen  144 DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG--------------GPGYPDGLA-VDSDGNLWVADWGGGRIV  208 (246)
T ss_dssp             TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS--------------SSCEEEEEE-EBTTS-EEEEEETTTEEE
T ss_pred             cchheeecccccceeEEEeccccccceeeeeeEEEcCC--------------CCcCCCcce-EcCCCCEEEEEcCCCEEE
Confidence            997 99999999999999942  3  2   12221110              013588998 699999999999999999


Q ss_pred             EEECCCCceeeCC-CCCccceEEE
Q 010579          225 EIQLHDDDCSDNY-DDTFHLGIFV  247 (507)
Q Consensus       225 ~I~l~~~~~~~~~-~~G~p~gIa~  247 (507)
                      ++++++..+.... ....|+.+++
T Consensus       209 ~~~p~G~~~~~i~~p~~~~t~~~f  232 (246)
T PF08450_consen  209 VFDPDGKLLREIELPVPRPTNCAF  232 (246)
T ss_dssp             EEETTSCEEEEEE-SSSSEEEEEE
T ss_pred             EECCCccEEEEEcCCCCCEEEEEE
Confidence            9999976554322 2235666666

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.22  E-value=9.7e-10  Score=108.01  Aligned_cols=134  Identities=26%  Similarity=0.370  Sum_probs=97.2

Q ss_pred             eeEEEEc-CCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579           85 PFSVAVS-PSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  163 (507)
Q Consensus        85 P~gIaVd-~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N  163 (507)
                      |.+++++ ++|.|||++..  .+.+++..   .+.+..++....          ....++.|+++++|++|+|||+|...
T Consensus        42 ~~G~~~~~~~g~l~v~~~~--~~~~~d~~---~g~~~~~~~~~~----------~~~~~~~~ND~~vd~~G~ly~t~~~~  106 (246)
T PF08450_consen   42 PNGMAFDRPDGRLYVADSG--GIAVVDPD---TGKVTVLADLPD----------GGVPFNRPNDVAVDPDGNLYVTDSGG  106 (246)
T ss_dssp             EEEEEEECTTSEEEEEETT--CEEEEETT---TTEEEEEEEEET----------TCSCTEEEEEEEE-TTS-EEEEEECC
T ss_pred             CceEEEEccCCEEEEEEcC--ceEEEecC---CCcEEEEeeccC----------CCcccCCCceEEEcCCCCEEEEecCC
Confidence            9999999 79999999975  44555766   366666654311          11257899999999999999999875


Q ss_pred             --------CeEEEEcCCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCce-
Q 010579          164 --------MAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC-  233 (507)
Q Consensus       164 --------~rIrk~d~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~-  233 (507)
                              .+|.+++.++ +..+..                 .+..|+||++..+...|||+|+.+++|++++++.... 
T Consensus       107 ~~~~~~~~g~v~~~~~~~~~~~~~~-----------------~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~  169 (246)
T PF08450_consen  107 GGASGIDPGSVYRIDPDGKVTVVAD-----------------GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE  169 (246)
T ss_dssp             BCTTCGGSEEEEEEETTSEEEEEEE-----------------EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC
T ss_pred             CccccccccceEEECCCCeEEEEec-----------------CcccccceEECCcchheeecccccceeEEEeccccccc
Confidence                    5689999877 444421                 3668999998666667999999999999999864332 


Q ss_pred             ------e--eCCCCCccceEEEEec
Q 010579          234 ------S--DNYDDTFHLGIFVLVA  250 (507)
Q Consensus       234 ------~--~~~~~G~p~gIa~~~~  250 (507)
                            .  .....|.|.|++++..
T Consensus       170 ~~~~~~~~~~~~~~g~pDG~~vD~~  194 (246)
T PF08450_consen  170 LSNRRVFIDFPGGPGYPDGLAVDSD  194 (246)
T ss_dssp             EEEEEEEEE-SSSSCEEEEEEEBTT
T ss_pred             eeeeeeEEEcCCCCcCCCcceEcCC
Confidence                  1  1233357999999874

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.82  E-value=3.9e-07  Score=94.06  Aligned_cols=125  Identities=18%  Similarity=0.210  Sum_probs=86.1

Q ss_pred             CCCeeEEEEcCCCcEEEEeCC-----------CCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEE
Q 010579           82 GMEPFSVAVSPSGELLVLDSE-----------NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAV  150 (507)
Q Consensus        82 ~~~P~gIaVd~dG~LYVaDs~-----------n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaV  150 (507)
                      .+.|+++.++++|.+||.|..           .++|+++++.    +....+...               .+..|+|||+
T Consensus       110 ~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~----g~~~~l~~~---------------~~~~~NGla~  170 (307)
T COG3386         110 LNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD----GGVVRLLDD---------------DLTIPNGLAF  170 (307)
T ss_pred             cCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC----CCEEEeecC---------------cEEecCceEE
Confidence            379999999999999999988           1578888875    333332211               2678999999


Q ss_pred             cCCC-CEEEEeCCCCeEEEEcCCCcEEEecCcccC-CCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCC-eEEEEE
Q 010579          151 DDRG-NIYIADTMNMAIRKISDTGVTTIAGGKWSR-GVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQ-AIREIQ  227 (507)
Q Consensus       151 d~dG-nIYVADs~N~rIrk~d~~GVstIaGG~~g~-~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~-rIr~I~  227 (507)
                      ++|| .+|++|+..++|.+++-+-...-.++.... -...        .=..|-|++ +|.+|+||++-..++ +|.+++
T Consensus       171 SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~--------~~G~PDG~~-vDadG~lw~~a~~~g~~v~~~~  241 (307)
T COG3386         171 SPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDE--------EPGLPDGMA-VDADGNLWVAAVWGGGRVVRFN  241 (307)
T ss_pred             CCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccC--------CCCCCCceE-EeCCCCEEEecccCCceEEEEC
Confidence            9999 599999999999999854200000111000 0000        013678887 699999997666554 999999


Q ss_pred             CCCCcee
Q 010579          228 LHDDDCS  234 (507)
Q Consensus       228 l~~~~~~  234 (507)
                      +++....
T Consensus       242 pdG~l~~  248 (307)
T COG3386         242 PDGKLLG  248 (307)
T ss_pred             CCCcEEE
Confidence            9865443

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.71  E-value=1.2e-06  Score=90.36  Aligned_cols=138  Identities=16%  Similarity=0.221  Sum_probs=97.9

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      .+.++.++..|.|++++.+-   ++++.+   .+.. +.++-..       +    ..+++.|+++.++++|.|||.|..
T Consensus        68 ~~~~~~~d~~g~Lv~~~~g~---~~~~~~---~~~~~t~~~~~~-------~----~~~~~r~ND~~v~pdG~~wfgt~~  130 (307)
T COG3386          68 FSSGALIDAGGRLIACEHGV---RLLDPD---TGGKITLLAEPE-------D----GLPLNRPNDGVVDPDGRIWFGDMG  130 (307)
T ss_pred             cccceeecCCCeEEEEcccc---EEEecc---CCceeEEecccc-------C----CCCcCCCCceeEcCCCCEEEeCCC
Confidence            36788899999999998654   333322   1333 4444332       1    235789999999999999999987


Q ss_pred             C-----------CeEEEEcCCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCC
Q 010579          163 N-----------MAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  230 (507)
Q Consensus       163 N-----------~rIrk~d~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~  230 (507)
                      +           .+|+++++.| +..+..+                .+..|+||++.+++..||++|+..++|++++.+.
T Consensus       131 ~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~----------------~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~  194 (307)
T COG3386         131 YFDLGKSEERPTGSLYRVDPDGGVVRLLDD----------------DLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDP  194 (307)
T ss_pred             ccccCccccCCcceEEEEcCCCCEEEeecC----------------cEEecCceEECCCCCEEEEEeCCCCeEEEEecCc
Confidence            2           3588888655 4444321                2668999998766669999999999999999873


Q ss_pred             ---Cc-----ee-eCCCCCccceEEEEecceeE
Q 010579          231 ---DD-----CS-DNYDDTFHLGIFVLVAAAFF  254 (507)
Q Consensus       231 ---~~-----~~-~~~~~G~p~gIa~~~~a~~~  254 (507)
                         ..     +. .....|.|.|++++.++.++
T Consensus       195 ~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw  227 (307)
T COG3386         195 ATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLW  227 (307)
T ss_pred             ccCccCCcceEEEccCCCCCCCceEEeCCCCEE
Confidence               11     11 12356899999999987766

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.60  E-value=3e-06  Score=89.72  Aligned_cols=141  Identities=21%  Similarity=0.323  Sum_probs=100.8

Q ss_pred             CCeeEEEEcCCC-cEEEEeC--CCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEE
Q 010579           83 MEPFSVAVSPSG-ELLVLDS--ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYI  158 (507)
Q Consensus        83 ~~P~gIaVd~dG-~LYVaDs--~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYV  158 (507)
                      ..|.+++++++| .+||+|.  .+++|.+|+....   .+...  ..       .|       ..|.+++++++|+ +||
T Consensus       116 ~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~---~~~~~--~~-------vG-------~~P~~~a~~p~g~~vyv  176 (381)
T COG3391         116 LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN---KVTAT--IP-------VG-------NTPTGVAVDPDGNKVYV  176 (381)
T ss_pred             cCCceEEECCCCCEEEEEecccCCceEEEEeCCCC---eEEEE--Ee-------cC-------CCcceEEECCCCCeEEE
Confidence            379999999987 7999999  4799999998732   22111  11       11       1689999999999 999


Q ss_pred             EeCCCCeEEEEcCCCcEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCC--CeEEEEECCCCceeeC
Q 010579          159 ADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN--QAIREIQLHDDDCSDN  236 (507)
Q Consensus       159 ADs~N~rIrk~d~~GVstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn--~rIr~I~l~~~~~~~~  236 (507)
                      +|..+++|.+|+..+...+- +..         ......+..|.++++.++...+||++..+  +.|.+++.........
T Consensus       177 ~~~~~~~v~vi~~~~~~v~~-~~~---------~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~  246 (381)
T COG3391         177 TNSDDNTVSVIDTSGNSVVR-GSV---------GSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT  246 (381)
T ss_pred             EecCCCeEEEEeCCCcceec-ccc---------ccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence            99999999999988754442 110         01234567899998644445599999988  7999999988776553


Q ss_pred             --CCCC-ccceEEEEecce
Q 010579          237 --YDDT-FHLGIFVLVAAA  252 (507)
Q Consensus       237 --~~~G-~p~gIa~~~~a~  252 (507)
                        .... .|.+++..-...
T Consensus       247 ~~~~~~~~~~~v~~~p~g~  265 (381)
T COG3391         247 DLPVGSGAPRGVAVDPAGK  265 (381)
T ss_pred             ccccccCCCCceeECCCCC
Confidence              1222 467777766544

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=98.52  E-value=1.1e-07  Score=63.72  Aligned_cols=28  Identities=46%  Similarity=0.794  Sum_probs=26.6

Q ss_pred             CCCcceEEEcCCCCEEEEeCCCCeEEEE
Q 010579          142 MNHPKGLAVDDRGNIYIADTMNMAIRKI  169 (507)
Q Consensus       142 fn~P~GIaVd~dGnIYVADs~N~rIrk~  169 (507)
                      |+.|.|||++++|+|||||++|+||++|
T Consensus         1 f~~P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    1 FNYPHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence            6789999999999999999999999986

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=98.50  E-value=6e-06  Score=86.80  Aligned_cols=140  Identities=16%  Similarity=0.148  Sum_probs=87.5

Q ss_pred             CCCCeeEEEEcCCCcEEEEeCCC------------CeEEEEeCCCC--CCCccEEEecCCCCccccCCCCcccccCCCcc
Q 010579           81 FGMEPFSVAVSPSGELLVLDSEN------------SNIYKISTSLS--PYSRPKLVAGSPEGYYGHVDGRPRGARMNHPK  146 (507)
Q Consensus        81 ~~~~P~gIaVd~dG~LYVaDs~n------------~rI~ki~~~g~--~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~  146 (507)
                      ...+|.+|++|++|+|||++..+            +||+++.....  ...+.++++.                .++.|.
T Consensus        12 ~~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~----------------~l~~p~   75 (367)
T TIGR02604        12 LLRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE----------------ELSMVT   75 (367)
T ss_pred             ccCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec----------------CCCCcc
Confidence            35689999999999999998532            48888865310  1112234432                267899


Q ss_pred             eEEEcCCCCEEEEeCCCCeEEEE-cCCC-------cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeC
Q 010579          147 GLAVDDRGNIYIADTMNMAIRKI-SDTG-------VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR  218 (507)
Q Consensus       147 GIaVd~dGnIYVADs~N~rIrk~-d~~G-------VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~  218 (507)
                      ||++.++| |||++.  .+|.++ +.++       ..+++.+-..     .+    ......+++++ .+.+|.|||++.
T Consensus        76 Gi~~~~~G-lyV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~-----~~----~~~~~~~~~l~-~gpDG~LYv~~G  142 (367)
T TIGR02604        76 GLAVAVGG-VYVATP--PDILFLRDKDGDDKADGEREVLLSGFGG-----QI----NNHHHSLNSLA-WGPDGWLYFNHG  142 (367)
T ss_pred             ceeEecCC-EEEeCC--CeEEEEeCCCCCCCCCCccEEEEEccCC-----CC----CcccccccCce-ECCCCCEEEecc
Confidence            99999999 999984  458877 4322       2334322100     00    00123577887 588999999887


Q ss_pred             CC-------------------CeEEEEECCCCceee-CCCCCccceEEEEe
Q 010579          219 GN-------------------QAIREIQLHDDDCSD-NYDDTFHLGIFVLV  249 (507)
Q Consensus       219 gn-------------------~rIr~I~l~~~~~~~-~~~~G~p~gIa~~~  249 (507)
                      .+                   +.|.++++++..... ..+.-.|.|+++..
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~  193 (367)
T TIGR02604       143 NTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDS  193 (367)
T ss_pred             cCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECC
Confidence            32                   568888887755433 22223466777654

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=98.44  E-value=3.2e-06  Score=85.10  Aligned_cols=133  Identities=20%  Similarity=0.209  Sum_probs=96.5

Q ss_pred             CCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEe-cCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeC
Q 010579           83 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVA-GSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT  161 (507)
Q Consensus        83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~va-G~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs  161 (507)
                      ..|..|+.++||.+|+++.+.+.|-++++.   +|++.++. |.+                .+|.+|.+++||+.||+|+
T Consensus        62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~---tGev~~ypLg~G----------------a~Phgiv~gpdg~~Witd~  122 (353)
T COG4257          62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPA---TGEVETYPLGSG----------------ASPHGIVVGPDGSAWITDT  122 (353)
T ss_pred             CCccccccCCCCceEEecCccccceecCCC---CCceEEEecCCC----------------CCCceEEECCCCCeeEecC
Confidence            469999999999999999999999999998   57777664 221                4899999999999999999


Q ss_pred             CCCeEEEEcCC-C-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee--CC
Q 010579          162 MNMAIRKISDT-G-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD--NY  237 (507)
Q Consensus       162 ~N~rIrk~d~~-G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~--~~  237 (507)
                      ++ .|++++.. + ++++.=          ......+.|+.    ++.|+.|+||++.. ++.-=++++.......  ..
T Consensus       123 ~~-aI~R~dpkt~evt~f~l----------p~~~a~~nlet----~vfD~~G~lWFt~q-~G~yGrLdPa~~~i~vfpaP  186 (353)
T COG4257         123 GL-AIGRLDPKTLEVTRFPL----------PLEHADANLET----AVFDPWGNLWFTGQ-IGAYGRLDPARNVISVFPAP  186 (353)
T ss_pred             cc-eeEEecCcccceEEeec----------ccccCCCcccc----eeeCCCccEEEeec-cccceecCcccCceeeeccC
Confidence            98 99999963 3 666521          11222334444    23599999999976 3333355655555443  23


Q ss_pred             CCCccceEEEEec
Q 010579          238 DDTFHLGIFVLVA  250 (507)
Q Consensus       238 ~~G~p~gIa~~~~  250 (507)
                      ..+.|.||++...
T Consensus       187 qG~gpyGi~atpd  199 (353)
T COG4257         187 QGGGPYGICATPD  199 (353)
T ss_pred             CCCCCcceEECCC
Confidence            4456889987664

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.33  E-value=1.6e-05  Score=84.21  Aligned_cols=135  Identities=21%  Similarity=0.226  Sum_probs=97.0

Q ss_pred             CCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCC-CEEEEe
Q 010579           83 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRG-NIYIAD  160 (507)
Q Consensus        83 ~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dG-nIYVAD  160 (507)
                      ..|.++++.++|+ +|+.+..+++|.+|+...   .++...+..     |           ..|.+++++++| .+||+|
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~---~~~~~~~~v-----G-----------~~P~~~~~~~~~~~vYV~n  134 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTAT---NTVLGSIPV-----G-----------LGPVGLAVDPDGKYVYVAN  134 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcCcc---cceeeEeee-----c-----------cCCceEEECCCCCEEEEEe
Confidence            5799999999887 999999999999999542   222222211     1           279999999988 599999


Q ss_pred             C--CCCeEEEEcCCCcEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCe-EEEEeCCCCeEEEEECCCCceee--
Q 010579          161 T--MNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCS-LLVIDRGNQAIREIQLHDDDCSD--  235 (507)
Q Consensus       161 s--~N~rIrk~d~~GVstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~-LyVaD~gn~rIr~I~l~~~~~~~--  235 (507)
                      .  .++.|.+||...-+.++....|               ..|.++++ +++|. +||+|..+++|..|+..+.....  
T Consensus       135 ~~~~~~~vsvid~~t~~~~~~~~vG---------------~~P~~~a~-~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~  198 (381)
T COG3391         135 AGNGNNTVSVIDAATNKVTATIPVG---------------NTPTGVAV-DPDGNKVYVTNSDDNTVSVIDTSGNSVVRGS  198 (381)
T ss_pred             cccCCceEEEEeCCCCeEEEEEecC---------------CCcceEEE-CCCCCeEEEEecCCCeEEEEeCCCcceeccc
Confidence            9  5799999997763333221111               15788885 55555 99999999999999988776552  


Q ss_pred             ----CCCCCccceEEEEecce
Q 010579          236 ----NYDDTFHLGIFVLVAAA  252 (507)
Q Consensus       236 ----~~~~G~p~gIa~~~~a~  252 (507)
                          ......|.++++..++.
T Consensus       199 ~~~~~~~~~~P~~i~v~~~g~  219 (381)
T COG3391         199 VGSLVGVGTGPAGIAVDPDGN  219 (381)
T ss_pred             cccccccCCCCceEEECCCCC
Confidence                22233577888866544

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=98.32  E-value=3.4e-05  Score=77.85  Aligned_cols=165  Identities=15%  Similarity=0.185  Sum_probs=99.7

Q ss_pred             CCCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEe----------------cCC-------CCccccCCCCc-
Q 010579           82 GMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVA----------------GSP-------EGYYGHVDGRP-  137 (507)
Q Consensus        82 ~~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~va----------------G~~-------~G~~G~~dG~~-  137 (507)
                      +..|++|.++|||..||+|.++ .|.|++....   .++.+-                +.+       .|..|-.|-.- 
T Consensus       103 Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~---evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~  178 (353)
T COG4257         103 GASPHGIVVGPDGSAWITDTGL-AIGRLDPKTL---EVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARN  178 (353)
T ss_pred             CCCCceEEECCCCCeeEecCcc-eeEEecCccc---ceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccC
Confidence            4589999999999999999988 9999998522   222221                000       11112111000 


Q ss_pred             -----ccccCCCcceEEEcCCCCEEEEeCCCCeEEEEcC-CC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCC
Q 010579          138 -----RGARMNHPKGLAVDDRGNIYIADTMNMAIRKISD-TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSS  210 (507)
Q Consensus       138 -----~~a~fn~P~GIaVd~dGnIYVADs~N~rIrk~d~-~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~  210 (507)
                           ..-+=..|.|||+.+||.+|++....+.|-+||+ ++ -..+.-              -++.-+.-..| -+|+-
T Consensus       179 ~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~--------------P~~~~~gsRri-wsdpi  243 (353)
T COG4257         179 VISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQ--------------PNALKAGSRRI-WSDPI  243 (353)
T ss_pred             ceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccCCcceecC--------------CCccccccccc-ccCcc
Confidence                 0012246889999999999999999999999995 33 222210              00000111233 36889


Q ss_pred             CeEEEEeCCCCeEEEEECCCCceeeC---CCCCccceEEEEe-cceeEEehhHHHhccc
Q 010579          211 CSLLVIDRGNQAIREIQLHDDDCSDN---YDDTFHLGIFVLV-AAAFFGYMLALLQRRV  265 (507)
Q Consensus       211 G~LyVaD~gn~rIr~I~l~~~~~~~~---~~~G~p~gIa~~~-~a~~~gy~~~~lq~~~  265 (507)
                      |.+++++.+++++.+|++........   ...-.|..+-++. +-+++-+..+-...||
T Consensus       244 g~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~agai~rf  302 (353)
T COG4257         244 GRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRF  302 (353)
T ss_pred             CcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeeccccCceeec
Confidence            99999999999999999887654332   2223455665554 2344434444333444

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=98.30  E-value=5.4e-06  Score=86.78  Aligned_cols=140  Identities=14%  Similarity=0.207  Sum_probs=102.1

Q ss_pred             CCeeEEEEcCCC-cEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeC
Q 010579           83 MEPFSVAVSPSG-ELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT  161 (507)
Q Consensus        83 ~~P~gIaVd~dG-~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs  161 (507)
                      -+|-||+++..| +|||||.. --+.++++.+   +....++...       +|    ..|...+++.|+++|.||++|+
T Consensus       115 GRPLGl~f~~~ggdL~VaDAY-lGL~~V~p~g---~~a~~l~~~~-------~G----~~~kf~N~ldI~~~g~vyFTDS  179 (376)
T KOG1520|consen  115 GRPLGIRFDKKGGDLYVADAY-LGLLKVGPEG---GLAELLADEA-------EG----KPFKFLNDLDIDPEGVVYFTDS  179 (376)
T ss_pred             CCcceEEeccCCCeEEEEecc-eeeEEECCCC---Ccceeccccc-------cC----eeeeecCceeEcCCCeEEEecc
Confidence            389999999865 99999976 5788999884   3333343332       33    3577788999999999999998


Q ss_pred             CC-----------------CeEEEEcCCC-c-EEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCe
Q 010579          162 MN-----------------MAIRKISDTG-V-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQA  222 (507)
Q Consensus       162 ~N-----------------~rIrk~d~~G-V-stIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~r  222 (507)
                      ..                 +|+.++|+.. + +++                 -..|..|+||++..+...|+++.+...|
T Consensus       180 Ssk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VL-----------------ld~L~F~NGlaLS~d~sfvl~~Et~~~r  242 (376)
T KOG1520|consen  180 SSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVL-----------------LDGLYFPNGLALSPDGSFVLVAETTTAR  242 (376)
T ss_pred             ccccchhheEEeeecCCCccceEEecCcccchhhh-----------------hhcccccccccCCCCCCEEEEEeeccce
Confidence            53                 3455555333 1 222                 2347889999987777789999999999


Q ss_pred             EEEEECCCCceee-----CCCCCccceEEEEecceeE
Q 010579          223 IREIQLHDDDCSD-----NYDDTFHLGIFVLVAAAFF  254 (507)
Q Consensus       223 Ir~I~l~~~~~~~-----~~~~G~p~gIa~~~~a~~~  254 (507)
                      |+++-+.+....+     ..-.|+|..|-....+.|+
T Consensus       243 i~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~fW  279 (376)
T KOG1520|consen  243 IKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGHFW  279 (376)
T ss_pred             eeeeEecCCccCchhhHhhcCCCCCcceeECCCCCEE
Confidence            9999999876632     3467889988887655454

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.29  E-value=6e-05  Score=78.45  Aligned_cols=124  Identities=19%  Similarity=0.276  Sum_probs=84.0

Q ss_pred             CCCCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEE---ecCCCCccccCCCCcccccCCCcceEEEcCCCC-
Q 010579           81 FGMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLV---AGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-  155 (507)
Q Consensus        81 ~~~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~~v---aG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-  155 (507)
                      .+..|..++++++|. +||++..++.|..++.+.. .+.+..+   .-.+.+.    .+      -+.|.+|++++||+ 
T Consensus       190 ~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~-~g~~~~~~~~~~~~~~~----~~------~~~~~~i~ispdg~~  258 (345)
T PF10282_consen  190 PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS-DGSLTEIQTISTLPEGF----TG------ENAPAEIAISPDGRF  258 (345)
T ss_dssp             TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT-TTEEEEEEEEESCETTS----CS------SSSEEEEEE-TTSSE
T ss_pred             cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc-CCceeEEEEeeeccccc----cc------cCCceeEEEecCCCE
Confidence            346799999999985 9999999999999876521 1333322   2111111    11      24899999999998 


Q ss_pred             EEEEeCCCCeEEEEcC---CC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECC
Q 010579          156 IYIADTMNMAIRKISD---TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH  229 (507)
Q Consensus       156 IYVADs~N~rIrk~d~---~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~  229 (507)
                      |||+..+.+.|.+|+-   +| ++.+..-..              .-..|.++++.++...|||++...+.|..|+.+
T Consensus       259 lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~--------------~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  259 LYVSNRGSNSISVFDLDPATGTLTLVQTVPT--------------GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             EEEEECTTTEEEEEEECTTTTTEEEEEEEEE--------------SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEEEeccCCEEEEEEEecCCCceEEEEEEeC--------------CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence            9999999999888773   34 443321100              112599999766666799999999999988764

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=98.29  E-value=3.7e-05  Score=80.83  Aligned_cols=116  Identities=14%  Similarity=0.172  Sum_probs=77.5

Q ss_pred             CCeeEEEEcCCCcEEEEeCCCCeEEEEe-CCC--CCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEE
Q 010579           83 MEPFSVAVSPSGELLVLDSENSNIYKIS-TSL--SPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIA  159 (507)
Q Consensus        83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki~-~~g--~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVA  159 (507)
                      ..|.+|++.++| |||++.  .+|+++. .++  ...+..++++......    +.    .....++++++++||.|||+
T Consensus        72 ~~p~Gi~~~~~G-lyV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~----~~----~~~~~~~~l~~gpDG~LYv~  140 (367)
T TIGR02604        72 SMVTGLAVAVGG-VYVATP--PDILFLRDKDGDDKADGEREVLLSGFGGQ----IN----NHHHSLNSLAWGPDGWLYFN  140 (367)
T ss_pred             CCccceeEecCC-EEEeCC--CeEEEEeCCCCCCCCCCccEEEEEccCCC----CC----cccccccCceECCCCCEEEe
Confidence            479999999998 999974  5798884 332  1122444444221100    00    01346889999999999999


Q ss_pred             eCCC-------------------CeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeC
Q 010579          160 DTMN-------------------MAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR  218 (507)
Q Consensus       160 Ds~N-------------------~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~  218 (507)
                      +..+                   .+|.+++++|  +..++.                 .+.+|+++++ +.+|.||++|.
T Consensus       141 ~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~-----------------G~rnp~Gl~~-d~~G~l~~tdn  202 (367)
T TIGR02604       141 HGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAH-----------------GFQNPYGHSV-DSWGDVFFCDN  202 (367)
T ss_pred             cccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEec-----------------CcCCCccceE-CCCCCEEEEcc
Confidence            8832                   4577888766  444432                 2678999995 77999999998


Q ss_pred             CCCeEEEEE
Q 010579          219 GNQAIREIQ  227 (507)
Q Consensus       219 gn~rIr~I~  227 (507)
                      .++...++.
T Consensus       203 ~~~~~~~i~  211 (367)
T TIGR02604       203 DDPPLCRVT  211 (367)
T ss_pred             CCCceeEEc
Confidence            766555443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.25  E-value=8e-05  Score=77.53  Aligned_cols=150  Identities=17%  Similarity=0.187  Sum_probs=94.1

Q ss_pred             CCCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEE
Q 010579           82 GMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIA  159 (507)
Q Consensus        82 ~~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVA  159 (507)
                      ..+|+.+.++|||. |||+|.+.++|++++.+... +.+...... .-..           -..|+.|+++++|. +||+
T Consensus       143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~-~~l~~~~~~-~~~~-----------G~GPRh~~f~pdg~~~Yv~  209 (345)
T PF10282_consen  143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDT-GKLTPVDSI-KVPP-----------GSGPRHLAFSPDGKYAYVV  209 (345)
T ss_dssp             STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS--TEEEEEEE-ECST-----------TSSEEEEEE-TTSSEEEEE
T ss_pred             cccceeEEECCCCCEEEEEecCCCEEEEEEEeCCC-ceEEEeecc-cccc-----------CCCCcEEEEcCCcCEEEEe
Confidence            46899999999986 99999999999999876321 122211100 0011           14799999999987 9999


Q ss_pred             eCCCCeEEEEcC---CC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCC--ce
Q 010579          160 DTMNMAIRKISD---TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD--DC  233 (507)
Q Consensus       160 Ds~N~rIrk~d~---~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~--~~  233 (507)
                      ...++.|.+|+-   +| ++.+..-...  .   .+   ...-+.|.+|++.++...|||++++.+.|..|+++..  ..
T Consensus       210 ~e~s~~v~v~~~~~~~g~~~~~~~~~~~--~---~~---~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l  281 (345)
T PF10282_consen  210 NELSNTVSVFDYDPSDGSLTEIQTISTL--P---EG---FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTL  281 (345)
T ss_dssp             ETTTTEEEEEEEETTTTEEEEEEEEESC--E---TT---SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTE
T ss_pred             cCCCCcEEEEeecccCCceeEEEEeeec--c---cc---ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCce
Confidence            999999998883   44 3222210000  0   00   0112478899976666679999999999999998543  22


Q ss_pred             ee---CC-CCCccceEEEEecce
Q 010579          234 SD---NY-DDTFHLGIFVLVAAA  252 (507)
Q Consensus       234 ~~---~~-~~G~p~gIa~~~~a~  252 (507)
                      ..   .. ....|.++++.....
T Consensus       282 ~~~~~~~~~G~~Pr~~~~s~~g~  304 (345)
T PF10282_consen  282 TLVQTVPTGGKFPRHFAFSPDGR  304 (345)
T ss_dssp             EEEEEEEESSSSEEEEEE-TTSS
T ss_pred             EEEEEEeCCCCCccEEEEeCCCC
Confidence            11   22 233588888866543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.20  E-value=0.00017  Score=73.78  Aligned_cols=145  Identities=13%  Similarity=0.102  Sum_probs=90.0

Q ss_pred             CCCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEE
Q 010579           82 GMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIA  159 (507)
Q Consensus        82 ~~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVA  159 (507)
                      +..|..++++++|. |||++...+.|..++.+.. .+.+..+.-.. .......+      -..|.+|+++++|+ |||+
T Consensus       174 g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~-~~~~~~~~~~~-~~p~~~~~------~~~~~~i~~~pdg~~lyv~  245 (330)
T PRK11028        174 GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP-HGEIECVQTLD-MMPADFSD------TRWAADIHITPDGRHLYAC  245 (330)
T ss_pred             CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCC-CCCEEEEEEEe-cCCCcCCC------CccceeEEECCCCCEEEEe
Confidence            34699999999986 8899988899988876511 12222211000 00000001      13577899999997 9999


Q ss_pred             eCCCCeEEEEc--CCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCC--Ccee
Q 010579          160 DTMNMAIRKIS--DTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD--DDCS  234 (507)
Q Consensus       160 Ds~N~rIrk~d--~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~--~~~~  234 (507)
                      +...+.|.+|+  .++ ..++.+...              .-..|.++++.++...|||++.+++.|..++.+.  +...
T Consensus       246 ~~~~~~I~v~~i~~~~~~~~~~~~~~--------------~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~  311 (330)
T PRK11028        246 DRTASLISVFSVSEDGSVLSFEGHQP--------------TETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLT  311 (330)
T ss_pred             cCCCCeEEEEEEeCCCCeEEEeEEEe--------------ccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEE
Confidence            98888888876  344 323322100              0136888887666668999999999999987653  2222


Q ss_pred             e---CCCCCccceEEEE
Q 010579          235 D---NYDDTFHLGIFVL  248 (507)
Q Consensus       235 ~---~~~~G~p~gIa~~  248 (507)
                      .   ......|.+|+++
T Consensus       312 ~~~~~~~g~~P~~~~~~  328 (330)
T PRK11028        312 ELGRYAVGQGPMWVSVL  328 (330)
T ss_pred             EccccccCCCceEEEEE
Confidence            2   1223467787773

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=98.16  E-value=3.1e-06  Score=56.77  Aligned_cols=27  Identities=33%  Similarity=0.455  Sum_probs=25.5

Q ss_pred             CCeeEEEEcCCCcEEEEeCCCCeEEEE
Q 010579           83 MEPFSVAVSPSGELLVLDSENSNIYKI  109 (507)
Q Consensus        83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki  109 (507)
                      ..|.||+++++|+|||+|++||||++|
T Consensus         2 ~~P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    2 NYPHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             SSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             cCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence            479999999999999999999999986

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=98.09  E-value=1.4e-05  Score=68.23  Aligned_cols=67  Identities=16%  Similarity=0.298  Sum_probs=52.5

Q ss_pred             EEEEcCC-CcEEEEeCCC-----------------CeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceE
Q 010579           87 SVAVSPS-GELLVLDSEN-----------------SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGL  148 (507)
Q Consensus        87 gIaVd~d-G~LYVaDs~n-----------------~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GI  148 (507)
                      +|+|+++ |.||++|+..                 +|+.++++.   +++..+++.+                |..|+||
T Consensus         2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~---t~~~~vl~~~----------------L~fpNGV   62 (89)
T PF03088_consen    2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPS---TKETTVLLDG----------------LYFPNGV   62 (89)
T ss_dssp             EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETT---TTEEEEEEEE----------------ESSEEEE
T ss_pred             ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECC---CCeEEEehhC----------------CCccCeE
Confidence            7899997 9999999753                 899999998   4666676643                7899999


Q ss_pred             EEcCCCC-EEEEeCCCCeEEEEcCC
Q 010579          149 AVDDRGN-IYIADTMNMAIRKISDT  172 (507)
Q Consensus       149 aVd~dGn-IYVADs~N~rIrk~d~~  172 (507)
                      ++++|+. |+||++...||.++--.
T Consensus        63 als~d~~~vlv~Et~~~Ri~rywl~   87 (89)
T PF03088_consen   63 ALSPDESFVLVAETGRYRILRYWLK   87 (89)
T ss_dssp             EE-TTSSEEEEEEGGGTEEEEEESS
T ss_pred             EEcCCCCEEEEEeccCceEEEEEEe
Confidence            9999998 99999999999997543

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=97.99  E-value=0.00065  Score=69.51  Aligned_cols=121  Identities=10%  Similarity=0.077  Sum_probs=81.0

Q ss_pred             CCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEe
Q 010579           83 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIAD  160 (507)
Q Consensus        83 ~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVAD  160 (507)
                      ..|..|+++++|+ ||++....++|..++.+.  .+.+.......       .      ....|.+++++++|+ +||++
T Consensus        80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~--~g~~~~~~~~~-------~------~~~~~~~~~~~p~g~~l~v~~  144 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDK--DGIPVAPIQII-------E------GLEGCHSANIDPDNRTLWVPC  144 (330)
T ss_pred             CCceEEEECCCCCEEEEEEcCCCeEEEEEECC--CCCCCCceeec-------c------CCCcccEeEeCCCCCEEEEee
Confidence            4799999999886 888888788988887641  12111111100       0      124689999999986 88999


Q ss_pred             CCCCeEEEEcC--CC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECC
Q 010579          161 TMNMAIRKISD--TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH  229 (507)
Q Consensus       161 s~N~rIrk~d~--~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~  229 (507)
                      .+.++|.+++.  .| +........       ..+    .-..|.++++.++...|||++...+.|..++++
T Consensus       145 ~~~~~v~v~d~~~~g~l~~~~~~~~-------~~~----~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~  205 (330)
T PRK11028        145 LKEDRIRLFTLSDDGHLVAQEPAEV-------TTV----EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK  205 (330)
T ss_pred             CCCCEEEEEEECCCCcccccCCCce-------ecC----CCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence            99999999884  33 211000000       000    013588898766667799999999999999886

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=97.98  E-value=8.7e-05  Score=83.29  Aligned_cols=119  Identities=20%  Similarity=0.171  Sum_probs=90.2

Q ss_pred             CCCCCeeEEEEcCC-CcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC-CCCEE
Q 010579           80 KFGMEPFSVAVSPS-GELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIY  157 (507)
Q Consensus        80 ~~~~~P~gIaVd~d-G~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~-dGnIY  157 (507)
                      ..+.+|.|||||.. -++|.+|+.+.+|-+-.++|++   -+++.-               ..|-+|++|++|+ .|+||
T Consensus      1065 ~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~---rkvLf~---------------tdLVNPR~iv~D~~rgnLY 1126 (1289)
T KOG1214|consen 1065 SGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSE---RKVLFY---------------TDLVNPRAIVVDPIRGNLY 1126 (1289)
T ss_pred             ccCCCccceeeeeccceeeeeccccchhheeecCCce---eeEEEe---------------ecccCcceEEeecccCcee
Confidence            34579999999984 4799999999999999888543   112211               2367899999999 78999


Q ss_pred             EEeCC--CCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCc
Q 010579          158 IADTM--NMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD  232 (507)
Q Consensus       158 VADs~--N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~  232 (507)
                      -+|..  |-.|-..+.+|  -.++.                +.-+..|+|+.+++-...|--+|.+++|+..+.+++..
T Consensus      1127 wtDWnRenPkIets~mDG~NrRili----------------n~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~g 1189 (1289)
T KOG1214|consen 1127 WTDWNRENPKIETSSMDGENRRILI----------------NTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTG 1189 (1289)
T ss_pred             eccccccCCcceeeccCCccceEEe----------------ecccCCCCCceeCcccceeeEEecCCcceeEecCCCCc
Confidence            99986  66788888777  22222                22355799999877777888899999999999887643

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=97.88  E-value=5.4e-05  Score=64.60  Aligned_cols=68  Identities=19%  Similarity=0.253  Sum_probs=50.9

Q ss_pred             ceEEEcCC-CCEEEEeCC-----------------CCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEE
Q 010579          146 KGLAVDDR-GNIYIADTM-----------------NMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVV  205 (507)
Q Consensus       146 ~GIaVd~d-GnIYVADs~-----------------N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa  205 (507)
                      ++|+|+++ |.||++|+.                 ++|+.++|+..  +++++.                 .|..|+||+
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~-----------------~L~fpNGVa   63 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD-----------------GLYFPNGVA   63 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE-----------------EESSEEEEE
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh-----------------CCCccCeEE
Confidence            47999998 999999993                 56899999766  555643                 267899999


Q ss_pred             EEcCCCeEEEEeCCCCeEEEEECCC
Q 010579          206 YVGSSCSLLVIDRGNQAIREIQLHD  230 (507)
Q Consensus       206 ~vd~~G~LyVaD~gn~rIr~I~l~~  230 (507)
                      +..+...|+|+.+...||.++-+.+
T Consensus        64 ls~d~~~vlv~Et~~~Ri~rywl~G   88 (89)
T PF03088_consen   64 LSPDESFVLVAETGRYRILRYWLKG   88 (89)
T ss_dssp             E-TTSSEEEEEEGGGTEEEEEESSS
T ss_pred             EcCCCCEEEEEeccCceEEEEEEeC
Confidence            7666667999999999999998865

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=97.88  E-value=7.5e-05  Score=83.78  Aligned_cols=134  Identities=18%  Similarity=0.139  Sum_probs=104.5

Q ss_pred             CCeeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCC-CEEEEe
Q 010579           83 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRG-NIYIAD  160 (507)
Q Consensus        83 ~~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dG-nIYVAD  160 (507)
                      .-|.||.+|- +-.+|.+|...+.|.+-+++|   ++.++++.+               .|..|.|||||--+ |||-+|
T Consensus      1025 ~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G---~Ep~ti~n~---------------~L~SPEGiAVDh~~Rn~ywtD 1086 (1289)
T KOG1214|consen 1025 SIIVGIDFDCRERMVYWTDVAGRSISRASLEG---AEPETIVNS---------------GLISPEGIAVDHIRRNMYWTD 1086 (1289)
T ss_pred             ceeeeeecccccceEEEeecCCCccccccccC---CCCceeecc---------------cCCCccceeeeeccceeeeec
Confidence            3578899986 556999999999999999885   455666544               37899999999754 699999


Q ss_pred             CCCCeEEEEcCCC-c-EEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeC--CCCeEEEEECCCCc--ee
Q 010579          161 TMNMAIRKISDTG-V-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR--GNQAIREIQLHDDD--CS  234 (507)
Q Consensus       161 s~N~rIrk~d~~G-V-stIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~--gn~rIr~I~l~~~~--~~  234 (507)
                      +.+.+|-+-.-+| . ..+.                ...|.+|.+|+++.-.++||-+|.  .|-.|-..++++..  ..
T Consensus      1087 S~lD~IevA~LdG~~rkvLf----------------~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRil 1150 (1289)
T KOG1214|consen 1087 SVLDKIEVALLDGSERKVLF----------------YTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRIL 1150 (1289)
T ss_pred             cccchhheeecCCceeeEEE----------------eecccCcceEEeecccCceeeccccccCCcceeeccCCccceEE
Confidence            9999998888777 2 2221                123779999998778999999995  67789899888866  34


Q ss_pred             eCCCCCccceEEEEec
Q 010579          235 DNYDDTFHLGIFVLVA  250 (507)
Q Consensus       235 ~~~~~G~p~gIa~~~~  250 (507)
                      .+...|+|+|+.++.-
T Consensus      1151 in~DigLPNGLtfdpf 1166 (1289)
T KOG1214|consen 1151 INTDIGLPNGLTFDPF 1166 (1289)
T ss_pred             eecccCCCCCceeCcc
Confidence            4677899999887653

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=97.66  E-value=0.011  Score=57.62  Aligned_cols=135  Identities=13%  Similarity=0.177  Sum_probs=86.3

Q ss_pred             CCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEE
Q 010579           83 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIA  159 (507)
Q Consensus        83 ~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVA  159 (507)
                      ..|..++++++|. ||++....++|+.++...   +.. ..+-...   .+.     . ..-..|.+++++++|+ +|++
T Consensus       157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~---~~~~~~~~~~~---~~~-----~-~~~~~~~~i~~s~dg~~~~~~  224 (300)
T TIGR03866       157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVAT---RKVIKKITFEI---PGV-----H-PEAVQPVGIKLTKDGKTAFVA  224 (300)
T ss_pred             CCccEEEECCCCCEEEEEcCCCCEEEEEEcCc---ceeeeeeeecc---ccc-----c-cccCCccceEECCCCCEEEEE
Confidence            3678899999987 556655568999999863   222 1111110   000     0 0112578999999998 5888


Q ss_pred             eCCCCeEEEEcCCC--cE-EEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceeeC
Q 010579          160 DTMNMAIRKISDTG--VT-TIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN  236 (507)
Q Consensus       160 Ds~N~rIrk~d~~G--Vs-tIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~~  236 (507)
                      ...+++|.++|...  +. .+..+                  ..+.++++.++...||++....+.|+.+++.+..+...
T Consensus       225 ~~~~~~i~v~d~~~~~~~~~~~~~------------------~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~  286 (300)
T TIGR03866       225 LGPANRVAVVDAKTYEVLDYLLVG------------------QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKS  286 (300)
T ss_pred             cCCCCeEEEEECCCCcEEEEEEeC------------------CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEE
Confidence            88888999999543  22 22110                  13567776555556777777788999999998876442


Q ss_pred             -CCCCccceEEE
Q 010579          237 -YDDTFHLGIFV  247 (507)
Q Consensus       237 -~~~G~p~gIa~  247 (507)
                       .....|.+|++
T Consensus       287 ~~~~~~~~~~~~  298 (300)
T TIGR03866       287 IKVGRLPWGVVV  298 (300)
T ss_pred             EEcccccceeEe
Confidence             23346778775

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=97.54  E-value=0.01  Score=62.85  Aligned_cols=172  Identities=18%  Similarity=0.192  Sum_probs=97.1

Q ss_pred             ceEeEEEecCCcEEEEEeCCCCeEEecCcceEeeCCeeeEEeecCCCCCCCeeEEEEcCCCc-EEEEeCCCCeEEEEeCC
Q 010579           34 GIVSNVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDSENSNIYKISTS  112 (507)
Q Consensus        34 G~l~~va~ag~~~I~~~d~~t~~i~aG~~~~~~~~G~~~~~~~~G~~~~~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~  112 (507)
                      +.+..++..+.+.|+.+|..+.++.     ..+..|..            -+.++++++||+ +||+.. .+.|.+||+.
T Consensus         5 ~~l~~V~~~~~~~v~viD~~t~~~~-----~~i~~~~~------------~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~   66 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDGATNKVV-----ARIPTGGA------------PHAGLKFSPDGRYLYVANR-DGTVSVIDLA   66 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEETTT-SEE-----EEEE-STT------------EEEEEE-TT-SSEEEEEET-TSEEEEEETT
T ss_pred             ccEEEEEecCCCEEEEEECCCCeEE-----EEEcCCCC------------ceeEEEecCCCCEEEEEcC-CCeEEEEECC
Confidence            3455577888899999999887765     22222221            245678899886 999975 5799999987


Q ss_pred             CCCCCc-cEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeCCCCeEEEEcCCC---cEEEecCcccCCCC
Q 010579          113 LSPYSR-PKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDTG---VTTIAGGKWSRGVG  187 (507)
Q Consensus       113 g~~~g~-i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs~N~rIrk~d~~G---VstIaGG~~g~~~G  187 (507)
                      .   .+ +..+.-.                 ..|.||++++||+ +||+....+.|.++|...   +.+|..+....   
T Consensus        67 ~---~~~v~~i~~G-----------------~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~---  123 (369)
T PF02239_consen   67 T---GKVVATIKVG-----------------GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV---  123 (369)
T ss_dssp             S---SSEEEEEE-S-----------------SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-T---
T ss_pred             c---ccEEEEEecC-----------------CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccc---
Confidence            3   33 2222211                 2689999999998 999999999999999655   55664332110   


Q ss_pred             CCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCc-e--eeCCCCCccceEEEEeccee
Q 010579          188 HVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD-C--SDNYDDTFHLGIFVLVAAAF  253 (507)
Q Consensus       188 ~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~-~--~~~~~~G~p~gIa~~~~a~~  253 (507)
                        ++     .-....+|...+.....+|+-...+.|+.++..... .  ......-+|.+..+....-+
T Consensus       124 --~~-----~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry  185 (369)
T PF02239_consen  124 --DG-----PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRY  185 (369)
T ss_dssp             --TT-----S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSE
T ss_pred             --cc-----cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccce
Confidence              00     112334554333333344455667788888755432 1  11222335666666655433

...

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=97.39  E-value=0.046  Score=53.24  Aligned_cols=115  Identities=17%  Similarity=0.176  Sum_probs=70.7

Q ss_pred             CeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeC
Q 010579           84 EPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT  161 (507)
Q Consensus        84 ~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs  161 (507)
                      .|.+++++++|. ||++....+.|+.++...   ++.....-.     +           ..|..++++++|+ +|++..
T Consensus        32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~---~~~~~~~~~-----~-----------~~~~~~~~~~~g~~l~~~~~   92 (300)
T TIGR03866        32 RPRGITLSKDGKLLYVCASDSDTIQVIDLAT---GEVIGTLPS-----G-----------PDPELFALHPNGKILYIANE   92 (300)
T ss_pred             CCCceEECCCCCEEEEEECCCCeEEEEECCC---CcEEEeccC-----C-----------CCccEEEECCCCCEEEEEcC
Confidence            467899999987 678888888999999762   322211100     0           1356789999987 778877


Q ss_pred             CCCeEEEEcCCCcEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEE-EEeCCCCeEEEEECCCCce
Q 010579          162 MNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLL-VIDRGNQAIREIQLHDDDC  233 (507)
Q Consensus       162 ~N~rIrk~d~~GVstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~Ly-VaD~gn~rIr~I~l~~~~~  233 (507)
                      ..++|+.+|...-..+..-.    .           -..|.++++ ++++.++ ++......+..++..+..+
T Consensus        93 ~~~~l~~~d~~~~~~~~~~~----~-----------~~~~~~~~~-~~dg~~l~~~~~~~~~~~~~d~~~~~~  149 (300)
T TIGR03866        93 DDNLVTVIDIETRKVLAEIP----V-----------GVEPEGMAV-SPDGKIVVNTSETTNMAHFIDTKTYEI  149 (300)
T ss_pred             CCCeEEEEECCCCeEEeEee----C-----------CCCcceEEE-CCCCCEEEEEecCCCeEEEEeCCCCeE
Confidence            67789999965422221000    0           013567775 5555544 4444445666777765544

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=97.38  E-value=0.0046  Score=65.18  Aligned_cols=101  Identities=17%  Similarity=0.244  Sum_probs=70.2

Q ss_pred             CCCcceEEEcCCC-CEEEEeCCCCeEEEEcCCC-cE-EEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeC
Q 010579          142 MNHPKGLAVDDRG-NIYIADTMNMAIRKISDTG-VT-TIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR  218 (507)
Q Consensus       142 fn~P~GIaVd~dG-nIYVADs~N~rIrk~d~~G-Vs-tIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~  218 (507)
                      -..|.||+++..| +|||||..- -+.+++..| .. .++.-        .+|    ..+...+++. ++++|.||++|+
T Consensus       114 CGRPLGl~f~~~ggdL~VaDAYl-GL~~V~p~g~~a~~l~~~--------~~G----~~~kf~N~ld-I~~~g~vyFTDS  179 (376)
T KOG1520|consen  114 CGRPLGIRFDKKGGDLYVADAYL-GLLKVGPEGGLAELLADE--------AEG----KPFKFLNDLD-IDPEGVVYFTDS  179 (376)
T ss_pred             cCCcceEEeccCCCeEEEEecce-eeEEECCCCCcceecccc--------ccC----eeeeecCcee-EcCCCeEEEecc
Confidence            3589999999987 899999864 578999766 43 33221        111    2344555666 356999999986


Q ss_pred             C-----------------CCeEEEEECCCCcee-eCCCCCccceEEEEecceeEEe
Q 010579          219 G-----------------NQAIREIQLHDDDCS-DNYDDTFHLGIFVLVAAAFFGY  256 (507)
Q Consensus       219 g-----------------n~rIr~I~l~~~~~~-~~~~~G~p~gIa~~~~a~~~gy  256 (507)
                      .                 ++|+.++|+.+.... ....-.+|+|+|+.-+..|+..
T Consensus       180 Ssk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~  235 (376)
T KOG1520|consen  180 SSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLV  235 (376)
T ss_pred             ccccchhheEEeeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEE
Confidence            3                 578888888776653 3566678999999877666543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=97.33  E-value=0.013  Score=61.08  Aligned_cols=157  Identities=13%  Similarity=0.190  Sum_probs=97.5

Q ss_pred             cEEEEEeCCCCeEEecCcceEeeCCeeeEEeecCCCCCCCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCcc---E
Q 010579           45 KWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRP---K  120 (507)
Q Consensus        45 ~~I~~~d~~t~~i~aG~~~~~~~~G~~~~~~~~G~~~~~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i---~  120 (507)
                      +.|+..|+.+..+.    ++.+.+|........--..+.-|.-|+|.|+|. .|+..--|++|-++.-+.. .+++   .
T Consensus       157 ~~l~v~DLG~Dri~----~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ  231 (346)
T COG2706         157 RYLVVPDLGTDRIF----LYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQ  231 (346)
T ss_pred             CEEEEeecCCceEE----EEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEee
Confidence            46777777777655    355556654333322234557799999999987 6888888899888765532 2333   3


Q ss_pred             EEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeCCCCeEEEE--cCC-C-cEEEecCcccCCCCCCCCCccC
Q 010579          121 LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKI--SDT-G-VTTIAGGKWSRGVGHVDGPSED  195 (507)
Q Consensus       121 ~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs~N~rIrk~--d~~-G-VstIaGG~~g~~~G~~dg~~~~  195 (507)
                      ++.-.++++.|          -++-..|.+++||+ ||++|.+.+.|..|  +.+ | +.++..-.            .+
T Consensus       232 ~i~tlP~dF~g----------~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~------------te  289 (346)
T COG2706         232 TIDTLPEDFTG----------TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITP------------TE  289 (346)
T ss_pred             eeccCccccCC----------CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEec------------cC
Confidence            34434444433          24556899999998 99999998877655  455 4 34432211            11


Q ss_pred             ccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCC
Q 010579          196 AKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  230 (507)
Q Consensus       196 a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~  230 (507)
                        -..|.+..+.+....|+++....+.|.++..+.
T Consensus       290 --g~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~  322 (346)
T COG2706         290 --GQFPRDFNINPSGRFLIAANQKSDNITVFERDK  322 (346)
T ss_pred             --CcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence              124666665555566777766666666665544

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.23  E-value=0.0016  Score=65.59  Aligned_cols=76  Identities=24%  Similarity=0.458  Sum_probs=46.3

Q ss_pred             CCeeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeC
Q 010579           83 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT  161 (507)
Q Consensus        83 ~~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs  161 (507)
                      ..|.+|+++| .|+|||....+++|..++..    |++.-..--..|..|      ....+..|.|||+|++|+|||+.-
T Consensus       171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d~~----G~~~~~~~L~~g~~g------l~~~~~QpEGIa~d~~G~LYIvsE  240 (248)
T PF06977_consen  171 RDLSGLSYDPRTGHLLILSDESRLLLELDRQ----GRVVSSLSLDRGFHG------LSKDIPQPEGIAFDPDGNLYIVSE  240 (248)
T ss_dssp             S---EEEEETTTTEEEEEETTTTEEEEE-TT------EEEEEE-STTGGG-------SS---SEEEEEE-TT--EEEEET
T ss_pred             ccccceEEcCCCCeEEEEECCCCeEEEECCC----CCEEEEEEeCCcccC------cccccCCccEEEECCCCCEEEEcC
Confidence            5799999999 78999999999999999987    444332222112222      223688999999999999999987


Q ss_pred             CCCeEEEE
Q 010579          162 MNMAIRKI  169 (507)
Q Consensus       162 ~N~rIrk~  169 (507)
                      .| +..+|
T Consensus       241 pN-lfy~f  247 (248)
T PF06977_consen  241 PN-LFYRF  247 (248)
T ss_dssp             TT-EEEEE
T ss_pred             Cc-eEEEe
Confidence            55 55554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.22  E-value=0.007  Score=63.05  Aligned_cols=124  Identities=21%  Similarity=0.250  Sum_probs=74.1

Q ss_pred             CCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCccccCCCCcccccCCCcceEEEcCC----CCEE
Q 010579           83 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDR----GNIY  157 (507)
Q Consensus        83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~d----GnIY  157 (507)
                      ..|.+|++.|||.|||++. .++|++++.+    +.. ..+..... ...        .......||+++++    +.||
T Consensus         2 ~~P~~~a~~pdG~l~v~e~-~G~i~~~~~~----g~~~~~v~~~~~-v~~--------~~~~gllgia~~p~f~~n~~lY   67 (331)
T PF07995_consen    2 NNPRSMAFLPDGRLLVAER-SGRIWVVDKD----GSLKTPVADLPE-VFA--------DGERGLLGIAFHPDFASNGYLY   67 (331)
T ss_dssp             SSEEEEEEETTSCEEEEET-TTEEEEEETT----TEECEEEEE-TT-TBT--------STTBSEEEEEE-TTCCCC-EEE
T ss_pred             CCceEEEEeCCCcEEEEeC-CceEEEEeCC----CcCcceeccccc-ccc--------cccCCcccceeccccCCCCEEE
Confidence            4799999999999999998 8999999965    332 23332211 100        11346789999994    8899


Q ss_pred             EEeCCC--------CeEEEEc--CCC-----cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEe-----
Q 010579          158 IADTMN--------MAIRKIS--DTG-----VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVID-----  217 (507)
Q Consensus       158 VADs~N--------~rIrk~d--~~G-----VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD-----  217 (507)
                      |+-+..        .+|.++.  .+.     ..+|.-+...          .....-.-..|+ .+++|.|||+-     
T Consensus        68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~----------~~~~~H~g~~l~-fgpDG~LYvs~G~~~~  136 (331)
T PF07995_consen   68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPD----------TSSGNHNGGGLA-FGPDGKLYVSVGDGGN  136 (331)
T ss_dssp             EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-----------CSSSS-EEEEE-E-TTSEEEEEEB-TTT
T ss_pred             EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCC----------CCCCCCCCcccc-CCCCCcEEEEeCCCCC
Confidence            987732        4666665  221     2233221110          001112234566 58899999982     


Q ss_pred             --------CCCCeEEEEECCCC
Q 010579          218 --------RGNQAIREIQLHDD  231 (507)
Q Consensus       218 --------~gn~rIr~I~l~~~  231 (507)
                              ...++|.+|++++.
T Consensus       137 ~~~~~~~~~~~G~ilri~~dG~  158 (331)
T PF07995_consen  137 DDNAQDPNSLRGKILRIDPDGS  158 (331)
T ss_dssp             GGGGCSTTSSTTEEEEEETTSS
T ss_pred             cccccccccccceEEEecccCc
Confidence                    23578999998775

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.07  E-value=0.046  Score=55.08  Aligned_cols=74  Identities=12%  Similarity=0.257  Sum_probs=45.7

Q ss_pred             cCCCcceEEEcC-CCCEEEEeCCCCeEEEEcCCC--cEEE--ecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEE
Q 010579          141 RMNHPKGLAVDD-RGNIYIADTMNMAIRKISDTG--VTTI--AGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLV  215 (507)
Q Consensus       141 ~fn~P~GIaVd~-dGnIYVADs~N~rIrk~d~~G--VstI--aGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyV  215 (507)
                      .+..|.+|++|+ .|+|||-...+++|..+|.+|  +..+  ..|..|          ....+..|-||++ |++|+|||
T Consensus       169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~g----------l~~~~~QpEGIa~-d~~G~LYI  237 (248)
T PF06977_consen  169 FVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHG----------LSKDIPQPEGIAF-DPDGNLYI  237 (248)
T ss_dssp             -SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-----------SS---SEEEEEE--TT--EEE
T ss_pred             eeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccC----------cccccCCccEEEE-CCCCCEEE
Confidence            467799999998 578999999999999999988  3333  222111          1235778999995 78999999


Q ss_pred             EeCCCCeEEEE
Q 010579          216 IDRGNQAIREI  226 (507)
Q Consensus       216 aD~gn~rIr~I  226 (507)
                      +..- |+..+|
T Consensus       238 vsEp-Nlfy~f  247 (248)
T PF06977_consen  238 VSEP-NLFYRF  247 (248)
T ss_dssp             EETT-TEEEEE
T ss_pred             EcCC-ceEEEe
Confidence            9985 466665

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.76  E-value=0.038  Score=57.10  Aligned_cols=136  Identities=18%  Similarity=0.174  Sum_probs=86.1

Q ss_pred             eEEEEcC---CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEE---
Q 010579           86 FSVAVSP---SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIA---  159 (507)
Q Consensus        86 ~gIaVd~---dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVA---  159 (507)
                      .|+|+..   ...||.+|..++||-+|+..-   ..+ .+.|...      |-. ..+. -.|.+|..- .|+|||+   
T Consensus       141 kGLAi~~~~~~~~LYaadF~~g~IDVFd~~f---~~~-~~~g~F~------DP~-iPag-yAPFnIqni-g~~lyVtYA~  207 (336)
T TIGR03118       141 KGLAVGPTGGGDYLYAANFRQGRIDVFKGSF---RPP-PLPGSFI------DPA-LPAG-YAPFNVQNL-GGTLYVTYAQ  207 (336)
T ss_pred             eeeEEeecCCCceEEEeccCCCceEEecCcc---ccc-cCCCCcc------CCC-CCCC-CCCcceEEE-CCeEEEEEEe
Confidence            3666653   236999999999999998652   212 2222221      100 0001 246777655 4789996   


Q ss_pred             -e---------CCCCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEc-----CCCeEEEEeCCCCe
Q 010579          160 -D---------TMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVG-----SSCSLLVIDRGNQA  222 (507)
Q Consensus       160 -D---------s~N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd-----~~G~LyVaD~gn~r  222 (507)
                       |         .+..-|-+||.+|  +.+++.+               ..|+.|++|+..+     -.|.|+|-+-+.++
T Consensus       208 qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~---------------g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~  272 (336)
T TIGR03118       208 QDADRNDEVAGAGLGYVNVFTLNGQLLRRVASS---------------GRLNAPWGLAIAPESFGSLSGALLVGNFGDGT  272 (336)
T ss_pred             cCCcccccccCCCcceEEEEcCCCcEEEEeccC---------------CcccCCceeeeChhhhCCCCCCeEEeecCCce
Confidence             2         2456788999888  5666532               3589999999643     34689999999999


Q ss_pred             EEEEECCCCcee-e-CCCCCccceEEEEe
Q 010579          223 IREIQLHDDDCS-D-NYDDTFHLGIFVLV  249 (507)
Q Consensus       223 Ir~I~l~~~~~~-~-~~~~G~p~gIa~~~  249 (507)
                      |-.|++...... . ....|.|.-|-.+.
T Consensus       273 InaFD~~sG~~~g~L~~~~G~pi~i~GLW  301 (336)
T TIGR03118       273 INAYDPQSGAQLGQLLDPDNHPVKVDGLW  301 (336)
T ss_pred             eEEecCCCCceeeeecCCCCCeEEecCeE
Confidence            999998754422 2 34555555444444

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=96.75  E-value=0.11  Score=56.66  Aligned_cols=89  Identities=21%  Similarity=0.319  Sum_probs=56.7

Q ss_pred             CCeeeEEeecCCCCCCCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcce
Q 010579           68 GGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKG  147 (507)
Q Consensus        68 ~G~~~~~~~~G~~~~~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~G  147 (507)
                      .++.++.+..|   +..|++|++.|||+|||++...++|++++..+   +....+.+...-.        .......+.|
T Consensus        18 ~~f~~~~va~G---L~~Pw~maflPDG~llVtER~~G~I~~v~~~~---~~~~~~~~l~~v~--------~~~ge~GLlg   83 (454)
T TIGR03606        18 ENFDKKVLLSG---LNKPWALLWGPDNQLWVTERATGKILRVNPET---GEVKVVFTLPEIV--------NDAQHNGLLG   83 (454)
T ss_pred             CCcEEEEEECC---CCCceEEEEcCCCeEEEEEecCCEEEEEeCCC---CceeeeecCCcee--------ccCCCCceee
Confidence            34444444432   45899999999999999998779999998753   2223333322100        0012456789


Q ss_pred             EEEcCCC-------CEEEEeC---------CCCeEEEEc
Q 010579          148 LAVDDRG-------NIYIADT---------MNMAIRKIS  170 (507)
Q Consensus       148 IaVd~dG-------nIYVADs---------~N~rIrk~d  170 (507)
                      ||++|+-       .|||+=+         ...+|.++.
T Consensus        84 lal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~  122 (454)
T TIGR03606        84 LALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYT  122 (454)
T ss_pred             EEECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEE
Confidence            9998763       5999832         245777765

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.64  E-value=0.011  Score=58.96  Aligned_cols=81  Identities=20%  Similarity=0.306  Sum_probs=55.7

Q ss_pred             CeeEEEEcCCC-cEEEEeCCCCeEEEE--eCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEe
Q 010579           84 EPFSVAVSPSG-ELLVLDSENSNIYKI--STSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIAD  160 (507)
Q Consensus        84 ~P~gIaVd~dG-~LYVaDs~n~rI~ki--~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVAD  160 (507)
                      -|+||+.|.+- .+|+.|+.|..|.-+  +..++.......+......         ..-.=-.|.|+++|.+|+||||-
T Consensus       159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~---------~~~e~~~PDGm~ID~eG~L~Va~  229 (310)
T KOG4499|consen  159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKS---------QPFESLEPDGMTIDTEGNLYVAT  229 (310)
T ss_pred             CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccC---------CCcCCCCCCcceEccCCcEEEEE
Confidence            57899998754 599999999999444  4554433333333322100         00012358899999999999999


Q ss_pred             CCCCeEEEEcC-CC
Q 010579          161 TMNMAIRKISD-TG  173 (507)
Q Consensus       161 s~N~rIrk~d~-~G  173 (507)
                      ....+|.++|. .|
T Consensus       230 ~ng~~V~~~dp~tG  243 (310)
T KOG4499|consen  230 FNGGTVQKVDPTTG  243 (310)
T ss_pred             ecCcEEEEECCCCC
Confidence            99999999994 55

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=96.61  E-value=0.024  Score=62.89  Aligned_cols=95  Identities=24%  Similarity=0.355  Sum_probs=59.3

Q ss_pred             CCCCCCeeEEEEcC-CCcEEEEeCCCC-------------------eEEEEeCCCCC----CCccEE--EecCCCCcccc
Q 010579           79 SKFGMEPFSVAVSP-SGELLVLDSENS-------------------NIYKISTSLSP----YSRPKL--VAGSPEGYYGH  132 (507)
Q Consensus        79 ~~~~~~P~gIaVd~-dG~LYVaDs~n~-------------------rI~ki~~~g~~----~g~i~~--vaG~~~G~~G~  132 (507)
                      ...+..|.+|++++ +|.|||+.+.++                   +|+++.+.+.-    ..++.+  ++|........
T Consensus       346 AT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~  425 (524)
T PF05787_consen  346 ATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGN  425 (524)
T ss_pred             cccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccc
Confidence            34458999999999 689999987766                   89999876431    112333  33332111111


Q ss_pred             CCCCcccccCCCcceEEEcCCCCEEEE-eCCCCe--EEEEcCCC
Q 010579          133 VDGRPRGARMNHPKGLAVDDRGNIYIA-DTMNMA--IRKISDTG  173 (507)
Q Consensus       133 ~dG~~~~a~fn~P~GIaVd~dGnIYVA-Ds~N~r--Irk~d~~G  173 (507)
                      ..+......|+.|-+|++|++|+|||+ |..++.  |.-.+.+|
T Consensus       426 ~~~~~~~~~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G  469 (524)
T PF05787_consen  426 GSNKCDDNGFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDG  469 (524)
T ss_pred             ccCcccCCCcCCCCceEECCCCCEEEEeCCCCCCcccccccccC
Confidence            122234567999999999999999997 444332  33334444

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.60  E-value=0.023  Score=59.23  Aligned_cols=127  Identities=20%  Similarity=0.284  Sum_probs=67.1

Q ss_pred             CeeEEEEcCC----CcEEEEeCCC--------CeEEEEeCCCC--CCCccEEEe-cCCCCccccCCCCcccccCCCcceE
Q 010579           84 EPFSVAVSPS----GELLVLDSEN--------SNIYKISTSLS--PYSRPKLVA-GSPEGYYGHVDGRPRGARMNHPKGL  148 (507)
Q Consensus        84 ~P~gIaVd~d----G~LYVaDs~n--------~rI~ki~~~g~--~~g~i~~va-G~~~G~~G~~dG~~~~a~fn~P~GI  148 (507)
                      ...+|+++|+    +.|||+-+..        .+|.++..+..  ..+...+++ +.+. .         ......-.+|
T Consensus        50 gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~-~---------~~~~H~g~~l  119 (331)
T PF07995_consen   50 GLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPD-T---------SSGNHNGGGL  119 (331)
T ss_dssp             SEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-----------CSSSS-EEEE
T ss_pred             CcccceeccccCCCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCC-C---------CCCCCCCccc
Confidence            5789999994    8899987743        57888876532  111122222 2111 0         0112344579


Q ss_pred             EEcCCCCEEEEeCC-------------CCeEEEEcCCCcEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEE
Q 010579          149 AVDDRGNIYIADTM-------------NMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLV  215 (507)
Q Consensus       149 aVd~dGnIYVADs~-------------N~rIrk~d~~GVstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyV  215 (507)
                      ++++||.|||+=..             ...|.+|+.+|.  +.......+....+...-...|.+|+++++.+..|.||+
T Consensus       120 ~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~--~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~  197 (331)
T PF07995_consen  120 AFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGS--IPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWA  197 (331)
T ss_dssp             EE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSS--B-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEE
T ss_pred             cCCCCCcEEEEeCCCCCcccccccccccceEEEecccCc--CCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEE
Confidence            99999999997332             246777877661  111100000000011112234889999998655599999


Q ss_pred             EeCCCCe
Q 010579          216 IDRGNQA  222 (507)
Q Consensus       216 aD~gn~r  222 (507)
                      +|.+...
T Consensus       198 ~d~G~~~  204 (331)
T PF07995_consen  198 ADNGPDG  204 (331)
T ss_dssp             EEE-SSS
T ss_pred             EccCCCC
Confidence            9977643

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=96.50  E-value=0.072  Score=56.34  Aligned_cols=112  Identities=16%  Similarity=0.147  Sum_probs=75.1

Q ss_pred             CcEEEEeCC----CCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeC-------
Q 010579           94 GELLVLDSE----NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT-------  161 (507)
Q Consensus        94 G~LYVaDs~----n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs-------  161 (507)
                      .++||.|..    .++|.+||.+.   .++.-.+-.+                ..|.++ +++||. ||||.+       
T Consensus        13 ~~v~V~d~~~~~~~~~v~ViD~~~---~~v~g~i~~G----------------~~P~~~-~spDg~~lyva~~~~~R~~~   72 (352)
T TIGR02658        13 RRVYVLDPGHFAATTQVYTIDGEA---GRVLGMTDGG----------------FLPNPV-VASDGSFFAHASTVYSRIAR   72 (352)
T ss_pred             CEEEEECCcccccCceEEEEECCC---CEEEEEEEcc----------------CCCcee-ECCCCCEEEEEecccccccc
Confidence            369999987    38999999862   3322211111                368897 999987 999999       


Q ss_pred             --CCCeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCC-CCeEEEEECCCCceee
Q 010579          162 --MNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG-NQAIREIQLHDDDCSD  235 (507)
Q Consensus       162 --~N~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~g-n~rIr~I~l~~~~~~~  235 (507)
                        ....|.+||...   +..|.-+..         | .......|..+++.+++..|||++.. .+.|-+||+.......
T Consensus        73 G~~~d~V~v~D~~t~~~~~~i~~p~~---------p-~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~  142 (352)
T TIGR02658        73 GKRTDYVEVIDPQTHLPIADIELPEG---------P-RFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVR  142 (352)
T ss_pred             CCCCCEEEEEECccCcEEeEEccCCC---------c-hhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEE
Confidence              788999999665   333321110         0 11124467777765555679999966 8999999998866544

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=96.49  E-value=0.026  Score=57.85  Aligned_cols=151  Identities=19%  Similarity=0.195  Sum_probs=86.8

Q ss_pred             EeEEEecCCcEEEEEeCCCCeEE---ecCcceE-------eeCCeeeEEeecCCCCCCCeeEEEEcC---CC-cEEEEeC
Q 010579           36 VSNVVSALVKWLWSLKDSPKTAV---SSSSMIK-------FEGGYTVETVFEGSKFGMEPFSVAVSP---SG-ELLVLDS  101 (507)
Q Consensus        36 l~~va~ag~~~I~~~d~~t~~i~---aG~~~~~-------~~~G~~~~~~~~G~~~~~~P~gIaVd~---dG-~LYVaDs  101 (507)
                      +..+++++...|.++|..+++..   .+ .+..       ..+|... ...      ..-.||+..+   +| .||+.--
T Consensus        79 ~aYItD~~~~glIV~dl~~~~s~Rv~~~-~~~~~p~~~~~~i~g~~~-~~~------dg~~gial~~~~~d~r~LYf~~l  150 (287)
T PF03022_consen   79 FAYITDSGGPGLIVYDLATGKSWRVLHN-SFSPDPDAGPFTIGGESF-QWP------DGIFGIALSPISPDGRWLYFHPL  150 (287)
T ss_dssp             EEEEEETTTCEEEEEETTTTEEEEEETC-GCTTS-SSEEEEETTEEE-EET------TSEEEEEE-TTSTTS-EEEEEET
T ss_pred             EEEEeCCCcCcEEEEEccCCcEEEEecC-CcceeccccceeccCceE-ecC------CCccccccCCCCCCccEEEEEeC
Confidence            44488888889999999888743   11 1000       0112111 111      1256788866   43 4999988


Q ss_pred             CCCeEEEEeCCCCCCCccEEEe--cCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCCeEEEEcCCC------
Q 010579          102 ENSNIYKISTSLSPYSRPKLVA--GSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG------  173 (507)
Q Consensus       102 ~n~rI~ki~~~g~~~g~i~~va--G~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~rIrk~d~~G------  173 (507)
                      ...+++++...--.......-.  ....-..|.        +-..-.|+++|++|+||++|..+++|.+.++++      
T Consensus       151 ss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~--------k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~  222 (287)
T PF03022_consen  151 SSRKLYRVPTSVLRDPSLSDAQALASQVQDLGD--------KGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPEN  222 (287)
T ss_dssp             T-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE-----------SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCC
T ss_pred             CCCcEEEEEHHHhhCccccccccccccceeccc--------cCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccc
Confidence            8889999974210000000000  000000010        012345999999999999999999999999876      


Q ss_pred             cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcC--CCeEEEEe
Q 010579          174 VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGS--SCSLLVID  217 (507)
Q Consensus       174 VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~--~G~LyVaD  217 (507)
                      +.+++-.              ...|.+|.++. ++.  +|.|||..
T Consensus       223 ~~~l~~d--------------~~~l~~pd~~~-i~~~~~g~L~v~s  253 (287)
T PF03022_consen  223 FEILAQD--------------PRTLQWPDGLK-IDPEGDGYLWVLS  253 (287)
T ss_dssp             EEEEEE---------------CC-GSSEEEEE-E-T--TS-EEEEE
T ss_pred             hheeEEc--------------Cceeeccceee-eccccCceEEEEE
Confidence            4555421              12388999998 577  89999986

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=96.48  E-value=0.33  Score=51.43  Aligned_cols=68  Identities=12%  Similarity=0.138  Sum_probs=49.5

Q ss_pred             EEEcCCCC-EEEE-eCC--------CCeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCC-eE
Q 010579          148 LAVDDRGN-IYIA-DTM--------NMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SL  213 (507)
Q Consensus       148 IaVd~dGn-IYVA-Ds~--------N~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G-~L  213 (507)
                      ++++++|+ +||+ ...        .+.|.+||...   +..|.-|                  ..|.+|++..+.. .|
T Consensus       253 ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG------------------~~~~~iavS~Dgkp~l  314 (352)
T TIGR02658       253 VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG------------------HEIDSINVSQDAKPLL  314 (352)
T ss_pred             EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC------------------CceeeEEECCCCCeEE
Confidence            99998866 9994 322        26899999655   4444322                  1678998766666 78


Q ss_pred             EEEeCCCCeEEEEECCCCce
Q 010579          214 LVIDRGNQAIREIQLHDDDC  233 (507)
Q Consensus       214 yVaD~gn~rIr~I~l~~~~~  233 (507)
                      |+++..++.|..||..+...
T Consensus       315 yvtn~~s~~VsViD~~t~k~  334 (352)
T TIGR02658       315 YALSTGDKTLYIFDAETGKE  334 (352)
T ss_pred             EEeCCCCCcEEEEECcCCeE
Confidence            99998999999999876543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.29  E-value=0.59  Score=47.60  Aligned_cols=116  Identities=13%  Similarity=0.104  Sum_probs=71.6

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  163 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N  163 (507)
                      .-.||++-.| .||..-..++..++++.+.  ...+..+.-.+                 ...|||.|. ..||++|. +
T Consensus        91 FgEGit~~~d-~l~qLTWk~~~~f~yd~~t--l~~~~~~~y~~-----------------EGWGLt~dg-~~Li~SDG-S  148 (264)
T PF05096_consen   91 FGEGITILGD-KLYQLTWKEGTGFVYDPNT--LKKIGTFPYPG-----------------EGWGLTSDG-KRLIMSDG-S  148 (264)
T ss_dssp             -EEEEEEETT-EEEEEESSSSEEEEEETTT--TEEEEEEE-SS-----------------S--EEEECS-SCEEEE-S-S
T ss_pred             cceeEEEECC-EEEEEEecCCeEEEEcccc--ceEEEEEecCC-----------------cceEEEcCC-CEEEEECC-c
Confidence            4668888754 8999999999999999862  12222222111                 345999763 46999996 7


Q ss_pred             CeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee
Q 010579          164 MAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD  235 (507)
Q Consensus       164 ~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~  235 (507)
                      .+|+.+|+..   +.+|.-..        ++    ..+..=+.+-++  +|.||.-=...++|.+|++.++.|..
T Consensus       149 ~~L~~~dP~~f~~~~~i~V~~--------~g----~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~~  209 (264)
T PF05096_consen  149 SRLYFLDPETFKEVRTIQVTD--------NG----RPVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVVG  209 (264)
T ss_dssp             SEEEEE-TTT-SEEEEEE-EE--------TT----EE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEEE
T ss_pred             cceEEECCcccceEEEEEEEE--------CC----EECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEEE
Confidence            7999999765   33332111        11    012233455554  68899888889999999999887643

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.25  E-value=0.039  Score=55.17  Aligned_cols=83  Identities=16%  Similarity=0.211  Sum_probs=57.6

Q ss_pred             cCCCcceEEEcCCCC-EEEEeCCCCeEEEEc---CCC-c---EEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCe
Q 010579          141 RMNHPKGLAVDDRGN-IYIADTMNMAIRKIS---DTG-V---TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCS  212 (507)
Q Consensus       141 ~fn~P~GIaVd~dGn-IYVADs~N~rIrk~d---~~G-V---stIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~  212 (507)
                      ++.-|+||+.|.+-. +|+.|+.|..|..++   ..| +   ..|.--....        +.+  --.|.|++ +|.+|+
T Consensus       156 ~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~--------~~e--~~~PDGm~-ID~eG~  224 (310)
T KOG4499|consen  156 CVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQ--------PFE--SLEPDGMT-IDTEGN  224 (310)
T ss_pred             hccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCC--------CcC--CCCCCcce-EccCCc
Confidence            356789999998654 999999999996555   344 2   1221111000        001  12588988 589999


Q ss_pred             EEEEeCCCCeEEEEECCCCcee
Q 010579          213 LLVIDRGNQAIREIQLHDDDCS  234 (507)
Q Consensus       213 LyVaD~gn~rIr~I~l~~~~~~  234 (507)
                      |||+-..+++|.++++.++...
T Consensus       225 L~Va~~ng~~V~~~dp~tGK~L  246 (310)
T KOG4499|consen  225 LYVATFNGGTVQKVDPTTGKIL  246 (310)
T ss_pred             EEEEEecCcEEEEECCCCCcEE
Confidence            9999999999999999876543

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=96.14  E-value=0.15  Score=53.07  Aligned_cols=135  Identities=21%  Similarity=0.333  Sum_probs=76.7

Q ss_pred             CCeeEEEEcCCCcEEEEeCCC------CeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-
Q 010579           83 MEPFSVAVSPSGELLVLDSEN------SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-  155 (507)
Q Consensus        83 ~~P~gIaVd~dG~LYVaDs~n------~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-  155 (507)
                      ..+.+|++.++|.+||++-..      ++|++++.+|.....+.+    +....-...+...-..=....+||+.++|. 
T Consensus        85 ~D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~v----P~~~~~~~~~~~~~~~N~G~E~la~~~dG~~  160 (326)
T PF13449_consen   85 LDPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPV----PAAFLPDANGTSGRRNNRGFEGLAVSPDGRT  160 (326)
T ss_pred             CChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEcc----ccccccccCccccccCCCCeEEEEECCCCCE
Confidence            378899998899999999999      999999988433222111    111100000000000112467999999999 


Q ss_pred             EEEEeCC---------------CCeEEEEcCC--C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEE
Q 010579          156 IYIADTM---------------NMAIRKISDT--G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVI  216 (507)
Q Consensus       156 IYVADs~---------------N~rIrk~d~~--G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVa  216 (507)
                      ||++=-.               ..||..++..  +  +..++--        .+.+.....-..+.+++++ +++.|||.
T Consensus       161 l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~--------ld~~~~~~~~~~isd~~al-~d~~lLvL  231 (326)
T PF13449_consen  161 LFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYP--------LDPPPTAPGDNGISDIAAL-PDGRLLVL  231 (326)
T ss_pred             EEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEe--------CCccccccCCCCceeEEEE-CCCcEEEE
Confidence            8876221               1467777743  3  2221110        0110111134467788865 56779999


Q ss_pred             eCC-------CCeEEEEECCC
Q 010579          217 DRG-------NQAIREIQLHD  230 (507)
Q Consensus       217 D~g-------n~rIr~I~l~~  230 (507)
                      .+.       ..+|+++++..
T Consensus       232 ER~~~~~~~~~~ri~~v~l~~  252 (326)
T PF13449_consen  232 ERDFSPGTGNYKRIYRVDLSD  252 (326)
T ss_pred             EccCCCCccceEEEEEEEccc
Confidence            987       34667777653

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=96.04  E-value=0.61  Score=51.05  Aligned_cols=118  Identities=18%  Similarity=0.288  Sum_probs=65.8

Q ss_pred             CeeEEEEcCC-------CcEEEEeC---------CCCeEEEEeCCCC--CCCccE-EEecCCCCccccCCCCcccccCCC
Q 010579           84 EPFSVAVSPS-------GELLVLDS---------ENSNIYKISTSLS--PYSRPK-LVAGSPEGYYGHVDGRPRGARMNH  144 (507)
Q Consensus        84 ~P~gIaVd~d-------G~LYVaDs---------~n~rI~ki~~~g~--~~g~i~-~vaG~~~G~~G~~dG~~~~a~fn~  144 (507)
                      -+.+|+++|+       +.|||+-+         ...+|.|+..+..  ...... ++.+.+.+ ..|           .
T Consensus        80 GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~-~~H-----------~  147 (454)
T TIGR03606        80 GLLGLALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAG-NDH-----------N  147 (454)
T ss_pred             ceeeEEECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCC-CCc-----------C
Confidence            5789999875       35999842         2468988876421  111122 33333211 111           2


Q ss_pred             cceEEEcCCCCEEEEeCCC--------------------------------CeEEEEcCCCcEEEecCcccCCCCCCCCC
Q 010579          145 PKGLAVDDRGNIYIADTMN--------------------------------MAIRKISDTGVTTIAGGKWSRGVGHVDGP  192 (507)
Q Consensus       145 P~GIaVd~dGnIYVADs~N--------------------------------~rIrk~d~~GVstIaGG~~g~~~G~~dg~  192 (507)
                      -..|++++||.|||+-...                                ..|.+|+.+|  ++..+     ..+.++.
T Consensus       148 GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DG--siP~d-----NPf~~g~  220 (454)
T TIGR03606       148 GGRLVFGPDGKIYYTIGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDG--SIPKD-----NPSINGV  220 (454)
T ss_pred             CceEEECCCCcEEEEECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCCC--CCCCC-----CCccCCC
Confidence            2368899999999963322                                1355555554  11100     0011111


Q ss_pred             ---ccCccCCCCceEEEEcCCCeEEEEeCCCC
Q 010579          193 ---SEDAKFSNDFDVVYVGSSCSLLVIDRGNQ  221 (507)
Q Consensus       193 ---~~~a~f~~P~gIa~vd~~G~LyVaD~gn~  221 (507)
                         .-.-.+.+|+++++ +++|.||++|-+-.
T Consensus       221 ~~eIyA~G~RNp~Gla~-dp~G~Lw~~e~Gp~  251 (454)
T TIGR03606       221 VSHIFTYGHRNPQGLAF-TPDGTLYASEQGPN  251 (454)
T ss_pred             cceEEEEeccccceeEE-CCCCCEEEEecCCC
Confidence               01224789999996 56899999997763

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=95.99  E-value=0.17  Score=52.98  Aligned_cols=165  Identities=15%  Similarity=0.196  Sum_probs=99.4

Q ss_pred             CeeEEEEcCCC-cEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeC
Q 010579           84 EPFSVAVSPSG-ELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT  161 (507)
Q Consensus        84 ~P~gIaVd~dG-~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs  161 (507)
                      .++..-++|+| .|+++|-+..||..++.+   .|..... ....-..|           ..|+-|++.|+|. .|+.--
T Consensus       146 h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~---dg~L~~~-~~~~v~~G-----------~GPRHi~FHpn~k~aY~v~E  210 (346)
T COG2706         146 HVHSANFTPDGRYLVVPDLGTDRIFLYDLD---DGKLTPA-DPAEVKPG-----------AGPRHIVFHPNGKYAYLVNE  210 (346)
T ss_pred             ccceeeeCCCCCEEEEeecCCceEEEEEcc---cCccccc-cccccCCC-----------CCcceEEEcCCCcEEEEEec
Confidence            37788899998 589999999999999987   2332211 11101111           3699999999998 899999


Q ss_pred             CCCeEEEEc--CC-C-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCc--eee
Q 010579          162 MNMAIRKIS--DT-G-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD--CSD  235 (507)
Q Consensus       162 ~N~rIrk~d--~~-G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~--~~~  235 (507)
                      .|+.|-++.  .. | +..+.--..-. .+ .+|      -++-..|.+..+...||++|++-+.|..|..+...  ...
T Consensus       211 L~stV~v~~y~~~~g~~~~lQ~i~tlP-~d-F~g------~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~  282 (346)
T COG2706         211 LNSTVDVLEYNPAVGKFEELQTIDTLP-ED-FTG------TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLEL  282 (346)
T ss_pred             cCCEEEEEEEcCCCceEEEeeeeccCc-cc-cCC------CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEE
Confidence            999988766  32 3 34332211000 00 111      22334566544555699999999999888766542  221


Q ss_pred             ---CCCCC-ccceEEEEecceeEEehhHHHhcccCcccccccC
Q 010579          236 ---NYDDT-FHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDD  274 (507)
Q Consensus       236 ---~~~~G-~p~gIa~~~~a~~~gy~~~~lq~~~g~~~~~~~~  274 (507)
                         ...-| +|.+..+..++.|+   .++-|.-..-.+|....
T Consensus       283 ~~~~~teg~~PR~F~i~~~g~~L---iaa~q~sd~i~vf~~d~  322 (346)
T COG2706         283 VGITPTEGQFPRDFNINPSGRFL---IAANQKSDNITVFERDK  322 (346)
T ss_pred             EEEeccCCcCCccceeCCCCCEE---EEEccCCCcEEEEEEcC
Confidence               22333 47777776665554   44445444434444333

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=95.97  E-value=0.046  Score=46.44  Aligned_cols=30  Identities=17%  Similarity=0.438  Sum_probs=26.9

Q ss_pred             cCCCcceEEEcCCCC-EEEEeCCCCeEEEEc
Q 010579          141 RMNHPKGLAVDDRGN-IYIADTMNMAIRKIS  170 (507)
Q Consensus       141 ~fn~P~GIaVd~dGn-IYVADs~N~rIrk~d  170 (507)
                      .|..|+||+++++++ |||||...+.|+++.
T Consensus        52 g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~   82 (86)
T PF01731_consen   52 GFSFANGIAISPDKKYLYVASSLAHSIHVYK   82 (86)
T ss_pred             cCCCCceEEEcCCCCEEEEEeccCCeEEEEE
Confidence            378999999999876 999999999999875

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=95.30  E-value=0.14  Score=54.42  Aligned_cols=100  Identities=15%  Similarity=0.195  Sum_probs=66.0

Q ss_pred             cEEEEeCCCCeEEEEeCCCCCCCc-cEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeCCCCeEEEEcCC
Q 010579           95 ELLVLDSENSNIYKISTSLSPYSR-PKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDT  172 (507)
Q Consensus        95 ~LYVaDs~n~rI~ki~~~g~~~g~-i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs~N~rIrk~d~~  172 (507)
                      -+||++...+.|..|+...   .+ +..+....                +-+.++++.+||+ +||+.. .+.|.+||..
T Consensus         7 l~~V~~~~~~~v~viD~~t---~~~~~~i~~~~----------------~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~   66 (369)
T PF02239_consen    7 LFYVVERGSGSVAVIDGAT---NKVVARIPTGG----------------APHAGLKFSPDGRYLYVANR-DGTVSVIDLA   66 (369)
T ss_dssp             EEEEEEGGGTEEEEEETTT----SEEEEEE-ST----------------TEEEEEE-TT-SSEEEEEET-TSEEEEEETT
T ss_pred             EEEEEecCCCEEEEEECCC---CeEEEEEcCCC----------------CceeEEEecCCCCEEEEEcC-CCeEEEEECC
Confidence            3568898899999998762   22 22332111                1245788999997 999976 5789999954


Q ss_pred             C---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCc
Q 010579          173 G---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD  232 (507)
Q Consensus       173 G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~  232 (507)
                      .   +.+|.-|.                  .|.+|++..+...|||++...+.|..+|..+..
T Consensus        67 ~~~~v~~i~~G~------------------~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle  111 (369)
T PF02239_consen   67 TGKVVATIKVGG------------------NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLE  111 (369)
T ss_dssp             SSSEEEEEE-SS------------------EEEEEEE--TTTEEEEEEEETTEEEEEETTT--
T ss_pred             cccEEEEEecCC------------------CcceEEEcCCCCEEEEEecCCCceeEecccccc
Confidence            3   55664332                  577888765666799999999999999987644

...

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=95.13  E-value=0.38  Score=51.70  Aligned_cols=133  Identities=21%  Similarity=0.294  Sum_probs=77.6

Q ss_pred             CCeeEEEEcCC-CcEEEEeCCCCeEEEEe-----CCCCCCCccEEEecCCCCcccc--CCCCcccccC----------CC
Q 010579           83 MEPFSVAVSPS-GELLVLDSENSNIYKIS-----TSLSPYSRPKLVAGSPEGYYGH--VDGRPRGARM----------NH  144 (507)
Q Consensus        83 ~~P~gIaVd~d-G~LYVaDs~n~rI~ki~-----~~g~~~g~i~~vaG~~~G~~G~--~dG~~~~a~f----------n~  144 (507)
                      .+|.|++++|. |.||++|.+...++--+     ..|..+|=+....|..  ..|.  .++ ...+.+          -.
T Consensus       239 RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~--~~g~~~~~~-~~~~~~~~p~~~~~~h~A  315 (399)
T COG2133         239 RNPQGLAWHPVTGALWTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQN--YDGRAIPDG-TVVAGAIQPVYTWAPHIA  315 (399)
T ss_pred             CCccceeecCCCCcEEEEecCCCcccCcccccccccCCccCCceeccCcc--cCccccCCC-cccccccCCceeeccccc
Confidence            58999999994 99999998875551111     1122222222221110  0010  011 011111          34


Q ss_pred             cceEEEcCC-------CCEEEEeCCCCeEEEEcCCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEE
Q 010579          145 PKGLAVDDR-------GNIYIADTMNMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVI  216 (507)
Q Consensus       145 P~GIaVd~d-------GnIYVADs~N~rIrk~d~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVa  216 (507)
                      |.||++-.-       |.+||+--+...+...+.+| ...+..+--   .+  |.      -..|.+|+ +..||.|||+
T Consensus       316 psGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl---~~--d~------~gR~~dV~-v~~DGallv~  383 (399)
T COG2133         316 PSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFL---SG--DL------GGRPRDVA-VAPDGALLVL  383 (399)
T ss_pred             cceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEE---ec--CC------CCcccceE-ECCCCeEEEe
Confidence            589999842       68999988887777777766 232221110   00  00      14899998 6899999999


Q ss_pred             eCC-CCeEEEEECCC
Q 010579          217 DRG-NQAIREIQLHD  230 (507)
Q Consensus       217 D~g-n~rIr~I~l~~  230 (507)
                      |-. +++|+++...+
T Consensus       384 ~D~~~g~i~Rv~~~~  398 (399)
T COG2133         384 TDQGDGRILRVSYAG  398 (399)
T ss_pred             ecCCCCeEEEecCCC
Confidence            877 77999998653

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.89  E-value=1  Score=46.78  Aligned_cols=161  Identities=11%  Similarity=0.058  Sum_probs=84.8

Q ss_pred             CCCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCC---CCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEE
Q 010579           82 GMEPFSVAVSPSGELLVLDSENSNIYKISTSLSP---YSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYI  158 (507)
Q Consensus        82 ~~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~---~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYV  158 (507)
                      +.+|+||++.|.|-+||+|.+.+....++.+...   .... +++..+ ...+       ...-..|+||++.....+-|
T Consensus        22 L~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~-L~vtiP-~~~~-------~~~~~~PTGiVfN~~~~F~v   92 (336)
T TIGR03118        22 LRNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDP-LVVVIP-APPP-------LAAEGTPTGQVFNGSDTFVV   92 (336)
T ss_pred             ccccceeEecCCCCEEEecCCcceEEeecCCcccccCCccc-eEEEec-CCCC-------CCCCCCccEEEEeCCCceEE
Confidence            4689999999999999999999998888865110   1111 111111 0000       01224699999986544444


Q ss_pred             EeCCCC--eEEEE-cCCC-cEEEecCcccCCCCCCCCC---ccCccCC-CC-----ceEEEE--cCCCeEEEEeCCCCeE
Q 010579          159 ADTMNM--AIRKI-SDTG-VTTIAGGKWSRGVGHVDGP---SEDAKFS-ND-----FDVVYV--GSSCSLLVIDRGNQAI  223 (507)
Q Consensus       159 ADs~N~--rIrk~-d~~G-VstIaGG~~g~~~G~~dg~---~~~a~f~-~P-----~gIa~v--d~~G~LyVaD~gn~rI  223 (507)
                      +-.+..  ....| +.+| |+--....        +-.   .....+. ..     .|+|+.  .....||.+|-.+++|
T Consensus        93 t~~g~~~~a~Fif~tEdGTisaW~p~v--------~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~I  164 (336)
T TIGR03118        93 SGEGITGPSRFLFVTEDGTLSGWAPAL--------GTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRI  164 (336)
T ss_pred             cCCCcccceeEEEEeCCceEEeecCcC--------CcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCce
Confidence            432221  11222 2444 22111100        000   0000010 01     244432  2356899999999999


Q ss_pred             EEEECCCCceeeC-------CCCC-ccceEEEEecceeEEehhH
Q 010579          224 REIQLHDDDCSDN-------YDDT-FHLGIFVLVAAAFFGYMLA  259 (507)
Q Consensus       224 r~I~l~~~~~~~~-------~~~G-~p~gIa~~~~a~~~gy~~~  259 (507)
                      .+++.........       -..| -|-+|..+.+..|+-|+.-
T Consensus       165 DVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~q  208 (336)
T TIGR03118       165 DVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQ  208 (336)
T ss_pred             EEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEec
Confidence            9998665433221       1112 2557777777777777543

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=94.86  E-value=0.091  Score=53.89  Aligned_cols=64  Identities=22%  Similarity=0.388  Sum_probs=47.9

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCC-ccEEEecCCCCccccCCCCcccccCCCcceEEEcC--CCCEEEEe
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYS-RPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD--RGNIYIAD  160 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g-~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~--dGnIYVAD  160 (507)
                      .-.|+++|++|+||+++...+.|.++++.+.+.. ...+++-..             ..|..|.+++++.  +|.|||.-
T Consensus       187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~-------------~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDP-------------RTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-C-------------C-GSSEEEEEE-T--TS-EEEEE
T ss_pred             CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcC-------------ceeeccceeeeccccCceEEEEE
Confidence            4569999999999999999999999999843321 345555322             2389999999999  99999985

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=94.53  E-value=0.37  Score=53.53  Aligned_cols=81  Identities=25%  Similarity=0.307  Sum_probs=52.4

Q ss_pred             CCCeeEEEEcC-CCcEEEEeCCCC----------------eEEEEeCCCC-C---CCccEEE--ecCCCCccccCCCCcc
Q 010579           82 GMEPFSVAVSP-SGELLVLDSENS----------------NIYKISTSLS-P---YSRPKLV--AGSPEGYYGHVDGRPR  138 (507)
Q Consensus        82 ~~~P~gIaVd~-dG~LYVaDs~n~----------------rI~ki~~~g~-~---~g~i~~v--aG~~~G~~G~~dG~~~  138 (507)
                      ..+|.+|++.| .|++|++.+.|.                +|+|+-+... .   ..+..++  +|.+.-..+.......
T Consensus       416 mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~  495 (616)
T COG3211         416 MDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANIN  495 (616)
T ss_pred             ccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCcc
Confidence            37999999999 678999988765                5777766532 1   1133333  3433211111111223


Q ss_pred             cccCCCcceEEEcCCCCEEEEeCC
Q 010579          139 GARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus       139 ~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      ...|+.|-+|+||+.|+|||+.-+
T Consensus       496 ~~~f~~PDnl~fD~~GrLWi~TDg  519 (616)
T COG3211         496 ANWFNSPDNLAFDPWGRLWIQTDG  519 (616)
T ss_pred             cccccCCCceEECCCCCEEEEecC
Confidence            356999999999999999998533

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=94.49  E-value=1.3  Score=46.21  Aligned_cols=139  Identities=18%  Similarity=0.194  Sum_probs=81.4

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs~  162 (507)
                      .-+.|++ .++.+|+..+.-+++..+++.-++.-....-     ...    ..+ ...=++-+|+|+.+ |. -||+-.+
T Consensus       104 diHdia~-~~~~l~fVNT~fSCLatl~~~~SF~P~WkPp-----FIs----~la-~eDRCHLNGlA~~~-g~p~yVTa~~  171 (335)
T TIGR03032       104 DAHDLAL-GAGRLLFVNTLFSCLATVSPDYSFVPLWKPP-----FIS----KLA-PEDRCHLNGMALDD-GEPRYVTALS  171 (335)
T ss_pred             chhheee-cCCcEEEEECcceeEEEECCCCccccccCCc-----ccc----ccC-ccCceeecceeeeC-CeEEEEEEee
Confidence            4678899 6779999999999999999875542222110     000    000 00114566999985 55 7876332


Q ss_pred             C------CeEEEEcCCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECC-CCcee
Q 010579          163 N------MAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH-DDDCS  234 (507)
Q Consensus       163 N------~rIrk~d~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~-~~~~~  234 (507)
                      .      .|=.+. .+| +--|..+.           .....|..|.+--.  -+|+|||.|.+.+.|.+++++ +....
T Consensus       172 ~sD~~~gWR~~~~-~gG~vidv~s~e-----------vl~~GLsmPhSPRW--hdgrLwvldsgtGev~~vD~~~G~~e~  237 (335)
T TIGR03032       172 QSDVADGWREGRR-DGGCVIDIPSGE-----------VVASGLSMPHSPRW--YQGKLWLLNSGRGELGYVDPQAGKFQP  237 (335)
T ss_pred             ccCCccccccccc-CCeEEEEeCCCC-----------EEEcCccCCcCCcE--eCCeEEEEECCCCEEEEEcCCCCcEEE
Confidence            1      111111 122 22221111           01112555666554  468999999999999999998 44434


Q ss_pred             eCCCCCccceEEEE
Q 010579          235 DNYDDTFHLGIFVL  248 (507)
Q Consensus       235 ~~~~~G~p~gIa~~  248 (507)
                      ...-.|+|.|++..
T Consensus       238 Va~vpG~~rGL~f~  251 (335)
T TIGR03032       238 VAFLPGFTRGLAFA  251 (335)
T ss_pred             EEECCCCCccccee
Confidence            44556788888877

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.48  E-value=0.13  Score=53.02  Aligned_cols=73  Identities=25%  Similarity=0.438  Sum_probs=47.4

Q ss_pred             EEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCCe
Q 010579           87 SVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMA  165 (507)
Q Consensus        87 gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~r  165 (507)
                      ++.+++ .|.|+|.-...++++.++..|...+.+.+..|.    .|      .....-.|.|||+|++|+|||+.--| .
T Consensus       237 gl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~----~g------L~~dipqaEGiamDd~g~lYIvSEPn-l  305 (316)
T COG3204         237 GLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGN----HG------LSSDIPQAEGIAMDDDGNLYIVSEPN-L  305 (316)
T ss_pred             cceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCC----CC------CcccCCCcceeEECCCCCEEEEecCC-c
Confidence            445554 567888877888889998875443333333332    22      12346689999999999999987554 3


Q ss_pred             EEEEc
Q 010579          166 IRKIS  170 (507)
Q Consensus       166 Irk~d  170 (507)
                      -.+|.
T Consensus       306 fy~F~  310 (316)
T COG3204         306 FYRFT  310 (316)
T ss_pred             ceecc
Confidence            34444

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=94.34  E-value=0.14  Score=37.36  Aligned_cols=41  Identities=27%  Similarity=0.386  Sum_probs=31.7

Q ss_pred             CcEEEEeCCCC-eEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC
Q 010579           94 GELLVLDSENS-NIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD  152 (507)
Q Consensus        94 G~LYVaDs~n~-rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~  152 (507)
                      |+||.+|...+ .|.+.+.+|+.   ..+++..               .+.+|.|||||+
T Consensus         1 ~~iYWtD~~~~~~I~~a~~dGs~---~~~vi~~---------------~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANLDGSN---RRTVISD---------------DLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETTTTEEEEEEETTSTS---EEEEEES---------------STSSEEEEEEET
T ss_pred             CEEEEEECCCCcEEEEEECCCCC---eEEEEEC---------------CCCCcCEEEECC
Confidence            57999999999 99999998632   3444432               378999999984

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.29  E-value=7.8  Score=40.28  Aligned_cols=154  Identities=14%  Similarity=0.206  Sum_probs=82.6

Q ss_pred             CCCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCC-CCEEEEe
Q 010579           82 GMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDR-GNIYIAD  160 (507)
Q Consensus        82 ~~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~d-GnIYVAD  160 (507)
                      ...|.+|+.-.+|...++|-...+++++..+-.  +++..+. ...-.-|..++  .+..|   .|+|.|+. +.+|||-
T Consensus       128 ~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~--t~~~~~~-~~~i~L~~~~k--~N~Gf---EGlA~d~~~~~l~~aK  199 (316)
T COG3204         128 FSDPETIEYIGGNQFVIVDERDRALYLFTVDAD--TTVISAK-VQKIPLGTTNK--KNKGF---EGLAWDPVDHRLFVAK  199 (316)
T ss_pred             cCChhHeEEecCCEEEEEehhcceEEEEEEcCC--ccEEecc-ceEEeccccCC--CCcCc---eeeecCCCCceEEEEE
Confidence            357999999888888899988899999876521  1111111 10000010011  01123   49999995 4588885


Q ss_pred             CCC-CeEEEEcC--CCcEEEecCcccCCCCCCCCCccC--ccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee
Q 010579          161 TMN-MAIRKISD--TGVTTIAGGKWSRGVGHVDGPSED--AKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD  235 (507)
Q Consensus       161 s~N-~rIrk~d~--~GVstIaGG~~g~~~G~~dg~~~~--a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~  235 (507)
                      -.| -+|.+++.  +..+.-+..          .+...  --+..-.++.+....++|+|..-..++|.+++..++....
T Consensus       200 Er~P~~I~~~~~~~~~l~~~~~~----------~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~  269 (316)
T COG3204         200 ERNPIGIFEVTQSPSSLSVHASL----------DPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIEL  269 (316)
T ss_pred             ccCCcEEEEEecCCccccccccc----------CcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeee
Confidence            543 35655551  122211111          01111  1123344566555567777777777777777777764322


Q ss_pred             ----CCCCC------ccceEEEEeccee
Q 010579          236 ----NYDDT------FHLGIFVLVAAAF  253 (507)
Q Consensus       236 ----~~~~G------~p~gIa~~~~a~~  253 (507)
                          -...|      -+.|||++....+
T Consensus       270 lsL~~g~~gL~~dipqaEGiamDd~g~l  297 (316)
T COG3204         270 LSLTKGNHGLSSDIPQAEGIAMDDDGNL  297 (316)
T ss_pred             EEeccCCCCCcccCCCcceeEECCCCCE
Confidence                11122      2569999876543

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=93.62  E-value=0.16  Score=35.68  Aligned_cols=33  Identities=36%  Similarity=0.442  Sum_probs=28.6

Q ss_pred             cCCCcceEEEcCC-CCEEEEeCCCCeEEEEcCCC
Q 010579          141 RMNHPKGLAVDDR-GNIYIADTMNMAIRKISDTG  173 (507)
Q Consensus       141 ~fn~P~GIaVd~d-GnIYVADs~N~rIrk~d~~G  173 (507)
                      .+..|+||++|+. +.||.+|.....|.+.+-+|
T Consensus         7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g   40 (43)
T smart00135        7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG   40 (43)
T ss_pred             CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence            4678999999996 45999999999999988666

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=93.50  E-value=4.9  Score=44.10  Aligned_cols=166  Identities=13%  Similarity=0.171  Sum_probs=80.4

Q ss_pred             eEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEE-EecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCC
Q 010579           86 FSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKL-VAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM  164 (507)
Q Consensus        86 ~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~-vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~  164 (507)
                      ..|.+...|.||+-|..+.+|-+++-++........ ..-.+..+       +.+-.+..-.-|++-+.|..||-+...+
T Consensus       279 krIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~psky-------ledfa~~~Gd~ia~VSRGkaFi~~~~~~  351 (668)
T COG4946         279 KRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKY-------LEDFAVVNGDYIALVSRGKAFIMRPWDG  351 (668)
T ss_pred             cEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHh-------hhhhccCCCcEEEEEecCcEEEECCCCC
Confidence            367888888999999999999998865322100000 00000000       0000011112355555666666666544


Q ss_pred             eEEEEcCCC-cE----------EEecCcccCC---CCCCCC--CccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEEC
Q 010579          165 AIRKISDTG-VT----------TIAGGKWSRG---VGHVDG--PSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQL  228 (507)
Q Consensus       165 rIrk~d~~G-Vs----------tIaGG~~g~~---~G~~dg--~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l  228 (507)
                      -+..+...| |.          .+.|...|..   .+...+  ...+..|.+-..|. ++.+|.-.|+-..+..|+.|++
T Consensus       352 ~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~-vs~dGK~~vvaNdr~el~vidi  430 (668)
T COG4946         352 YSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVK-VSPDGKKVVVANDRFELWVIDI  430 (668)
T ss_pred             eeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEE-EcCCCcEEEEEcCceEEEEEEe
Confidence            433333222 21          1111111100   011111  11222344444554 4555553334344555666666


Q ss_pred             CCCceee--CCCCCccceEEEEecceeEEehhH
Q 010579          229 HDDDCSD--NYDDTFHLGIFVLVAAAFFGYMLA  259 (507)
Q Consensus       229 ~~~~~~~--~~~~G~p~gIa~~~~a~~~gy~~~  259 (507)
                      +.+....  ...-|+.+++++--.+-|++|+++
T Consensus       431 dngnv~~idkS~~~lItdf~~~~nsr~iAYafP  463 (668)
T COG4946         431 DNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFP  463 (668)
T ss_pred             cCCCeeEecccccceeEEEEEcCCceeEEEecC
Confidence            6555443  344567788888888889999888

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=93.50  E-value=1.8  Score=47.14  Aligned_cols=113  Identities=20%  Similarity=0.242  Sum_probs=79.3

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCC-ccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYS-RPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g-~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      .-.++++.++|...++-+....|+.++...  .+ .+.++.|..                +....+++.++|+++++=+.
T Consensus       205 ~v~~~~fs~d~~~l~s~s~D~tiriwd~~~--~~~~~~~l~gH~----------------~~v~~~~f~p~g~~i~Sgs~  266 (456)
T KOG0266|consen  205 GVSDVAFSPDGSYLLSGSDDKTLRIWDLKD--DGRNLKTLKGHS----------------TYVTSVAFSPDGNLLVSGSD  266 (456)
T ss_pred             ceeeeEECCCCcEEEEecCCceEEEeeccC--CCeEEEEecCCC----------------CceEEEEecCCCCEEEEecC
Confidence            356889999999888888889999998731  12 234544432                34579999999999998888


Q ss_pred             CCeEEEEcCC-C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCc
Q 010579          163 NMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD  232 (507)
Q Consensus       163 N~rIrk~d~~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~  232 (507)
                      .+.||..+.. |  +.++.+-.        +         .-.+++ ...+++++++-...+.|+.+++.+..
T Consensus       267 D~tvriWd~~~~~~~~~l~~hs--------~---------~is~~~-f~~d~~~l~s~s~d~~i~vwd~~~~~  321 (456)
T KOG0266|consen  267 DGTVRIWDVRTGECVRKLKGHS--------D---------GISGLA-FSPDGNLLVSASYDGTIRVWDLETGS  321 (456)
T ss_pred             CCcEEEEeccCCeEEEeeeccC--------C---------ceEEEE-ECCCCCEEEEcCCCccEEEEECCCCc
Confidence            8889999844 3  44443321        1         123455 46677777776778888888888777

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=93.23  E-value=3.1  Score=43.27  Aligned_cols=30  Identities=30%  Similarity=0.558  Sum_probs=28.5

Q ss_pred             CcceEEEcCCCCEEEEeCCC------CeEEEEcCCC
Q 010579          144 HPKGLAVDDRGNIYIADTMN------MAIRKISDTG  173 (507)
Q Consensus       144 ~P~GIaVd~dGnIYVADs~N------~rIrk~d~~G  173 (507)
                      .+.||++.++|.+||++-+.      ++|++++.+|
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G  121 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDG  121 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCC
Confidence            78999998899999999999      9999999888

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=92.55  E-value=3.7  Score=41.97  Aligned_cols=111  Identities=12%  Similarity=0.136  Sum_probs=69.0

Q ss_pred             CeeEEEEcCCCcEEEEeCCC--CeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeC
Q 010579           84 EPFSVAVSPSGELLVLDSEN--SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT  161 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n--~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs  161 (507)
                      .-.|+.+..+|.||.+-...  ++|++++..+   |++....--+...+|              .||++-. +.||.--.
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~t---g~~~~~~~l~~~~Fg--------------EGit~~~-d~l~qLTW  107 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLET---GKVLQSVPLPPRYFG--------------EGITILG-DKLYQLTW  107 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTT---SSEEEEEE-TTT--E--------------EEEEEET-TEEEEEES
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCC---CcEEEEEECCccccc--------------eeEEEEC-CEEEEEEe
Confidence            35688887888999997654  6899999883   554433333323333              4999984 47999999


Q ss_pred             CCCeEEEEcCCCcEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCC
Q 010579          162 MNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  230 (507)
Q Consensus       162 ~N~rIrk~d~~GVstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~  230 (507)
                      .++...++|.+....+.--..               -...+|++.  ++..|+++| |..+|+.+++..
T Consensus       108 k~~~~f~yd~~tl~~~~~~~y---------------~~EGWGLt~--dg~~Li~SD-GS~~L~~~dP~~  158 (264)
T PF05096_consen  108 KEGTGFVYDPNTLKKIGTFPY---------------PGEGWGLTS--DGKRLIMSD-GSSRLYFLDPET  158 (264)
T ss_dssp             SSSEEEEEETTTTEEEEEEE----------------SSS--EEEE--CSSCEEEE--SSSEEEEE-TTT
T ss_pred             cCCeEEEEccccceEEEEEec---------------CCcceEEEc--CCCEEEEEC-CccceEEECCcc
Confidence            999999999877433311000               013467762  344666666 367777777654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=92.41  E-value=0.58  Score=52.14  Aligned_cols=81  Identities=21%  Similarity=0.433  Sum_probs=52.4

Q ss_pred             cccCCCcceEEEcC-CCCEEEEeCCCC-------------------eEEEEcCCC---------cEE-EecCcccCCCCC
Q 010579          139 GARMNHPKGLAVDD-RGNIYIADTMNM-------------------AIRKISDTG---------VTT-IAGGKWSRGVGH  188 (507)
Q Consensus       139 ~a~fn~P~GIaVd~-dGnIYVADs~N~-------------------rIrk~d~~G---------Vst-IaGG~~g~~~G~  188 (507)
                      .+.|+.|.+|++++ +|.||||-+.|.                   +|.+++..+         ..+ +.+|........
T Consensus       346 AT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~  425 (524)
T PF05787_consen  346 ATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGN  425 (524)
T ss_pred             cccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccc
Confidence            35799999999998 588999988776                   688888432         111 222221110111


Q ss_pred             CCCCccCccCCCCceEEEEcCCCeEEEEeCCC
Q 010579          189 VDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN  220 (507)
Q Consensus       189 ~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn  220 (507)
                      .........|.+|-.|++ +..|+|||+.-++
T Consensus       426 ~~~~~~~~~f~sPDNL~~-d~~G~LwI~eD~~  456 (524)
T PF05787_consen  426 GSNKCDDNGFASPDNLAF-DPDGNLWIQEDGG  456 (524)
T ss_pred             ccCcccCCCcCCCCceEE-CCCCCEEEEeCCC
Confidence            122334567999999985 7889999885433

>PRK02888 nitrous-oxide reductase; Validated

Probab=92.25  E-value=5.1  Score=45.57  Aligned_cols=82  Identities=9%  Similarity=0.135  Sum_probs=54.7

Q ss_pred             CCcceEEEcCCCC-EEEEeCCCCeEEEEcCCCcE-EEecCcccCCCCCCCCCccCccC-CCCceEEEEcCCCeEEEEeCC
Q 010579          143 NHPKGLAVDDRGN-IYIADTMNMAIRKISDTGVT-TIAGGKWSRGVGHVDGPSEDAKF-SNDFDVVYVGSSCSLLVIDRG  219 (507)
Q Consensus       143 n~P~GIaVd~dGn-IYVADs~N~rIrk~d~~GVs-tIaGG~~g~~~G~~dg~~~~a~f-~~P~gIa~vd~~G~LyVaD~g  219 (507)
                      +.|.||+++|||. +||+....+.|.+||...+. .+++.-.     ..+--..+..+ ..|...++ |.+|+.|++=..
T Consensus       321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~-----~~~~vvaevevGlGPLHTaF-Dg~G~aytslf~  394 (635)
T PRK02888        321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK-----PRDAVVAEPELGLGPLHTAF-DGRGNAYTTLFL  394 (635)
T ss_pred             CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC-----ccceEEEeeccCCCcceEEE-CCCCCEEEeEee
Confidence            5899999999998 89988888899999965522 2221100     00000011111 26888886 788899988777


Q ss_pred             CCeEEEEECCC
Q 010579          220 NQAIREIQLHD  230 (507)
Q Consensus       220 n~rIr~I~l~~  230 (507)
                      ...|-++++..
T Consensus       395 dsqv~kwn~~~  405 (635)
T PRK02888        395 DSQIVKWNIEA  405 (635)
T ss_pred             cceeEEEehHH
Confidence            78888888765

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=91.78  E-value=1.9  Score=50.66  Aligned_cols=141  Identities=17%  Similarity=0.153  Sum_probs=103.6

Q ss_pred             CCeeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC-CCCEEEEe
Q 010579           83 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIAD  160 (507)
Q Consensus        83 ~~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~-dGnIYVAD  160 (507)
                      ..|.++++|- .+++|.+|..+..|.+.+.+++.   ..+++..               .+..|..+++++ .|.+|.+|
T Consensus       480 ~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~---~~vl~~~---------------~l~~~r~~~v~p~~g~~~wtd  541 (877)
T KOG1215|consen  480 CIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSS---RKVLVSK---------------DLDLPRSIAVDPEKGLMFWTD  541 (877)
T ss_pred             cccCcEEEEeccCCceecccCCceeEEEEccCCc---eeEEEec---------------CCCCccceeeccccCeeEEec
Confidence            4689999997 67899999999999999976422   2333333               146899999999 67899999


Q ss_pred             CC-CCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCC-eEEEEECCCCce--e
Q 010579          161 TM-NMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQ-AIREIQLHDDDC--S  234 (507)
Q Consensus       161 s~-N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~-rIr~I~l~~~~~--~  234 (507)
                      .+ ..+|.+-..+|  ..++..                ..+..|++++..-.+..+|-+|.-.. .|.++..++..-  .
T Consensus       542 ~~~~~~i~ra~~dg~~~~~l~~----------------~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~~~  605 (877)
T KOG1215|consen  542 WGQPPRIERASLDGSERAVLVT----------------NGILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNRRVV  605 (877)
T ss_pred             CCCCchhhhhcCCCCCceEEEe----------------CCccCCCcceEEeecceeEEEcccCCcceeeeecCCCceEEe
Confidence            98 45777777777  344421                11568999998777889999999888 788988887654  2


Q ss_pred             eCCCCCccceEEEEecceeEEeh
Q 010579          235 DNYDDTFHLGIFVLVAAAFFGYM  257 (507)
Q Consensus       235 ~~~~~G~p~gIa~~~~a~~~gy~  257 (507)
                      .......|-++++..+..|.-+.
T Consensus       606 ~~~~~~~p~~~~~~~~~iyw~d~  628 (877)
T KOG1215|consen  606 DSEDLPHPFGLSVFEDYIYWTDW  628 (877)
T ss_pred             ccccCCCceEEEEecceeEEeec
Confidence            23445567888887766655443

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=91.38  E-value=0.64  Score=32.52  Aligned_cols=35  Identities=14%  Similarity=0.043  Sum_probs=31.0

Q ss_pred             cCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 010579          197 KFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD  231 (507)
Q Consensus       197 ~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~  231 (507)
                      .+..|.++++....+.||.+|...+.|.+.++++.
T Consensus         7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~   41 (43)
T smart00135        7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT   41 (43)
T ss_pred             CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence            46789999988888999999999999999998764

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=91.33  E-value=5.3  Score=42.86  Aligned_cols=78  Identities=19%  Similarity=0.320  Sum_probs=50.2

Q ss_pred             CCeeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEe-cCCCCccccCCCCcccccCCCcceEEEc--C--CCCE
Q 010579           83 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVA-GSPEGYYGHVDGRPRGARMNHPKGLAVD--D--RGNI  156 (507)
Q Consensus        83 ~~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~~va-G~~~G~~G~~dG~~~~a~fn~P~GIaVd--~--dGnI  156 (507)
                      .+|.|+++|. .|.|||++-. .-|+++..+-........++ ..+.+            -.....||++-  .  +|.|
T Consensus       208 sQ~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep~~~~~~~~v~~~~g~~------------l~aDvEGlaly~~~~g~gYL  274 (381)
T PF02333_consen  208 SQPEGCVVDDETGRLYVGEED-VGIWRYDAEPEGGNDRTLVASADGDG------------LVADVEGLALYYGSDGKGYL  274 (381)
T ss_dssp             S-EEEEEEETTTTEEEEEETT-TEEEEEESSCCC-S--EEEEEBSSSS------------B-S-EEEEEEEE-CCC-EEE
T ss_pred             CcceEEEEecccCCEEEecCc-cEEEEEecCCCCCCcceeeecccccc------------cccCccceEEEecCCCCeEE
Confidence            3799999997 7899999864 79999987632211122221 11111            12356788883  3  4569


Q ss_pred             EEEeCCCCeEEEEcCCC
Q 010579          157 YIADTMNMAIRKISDTG  173 (507)
Q Consensus       157 YVADs~N~rIrk~d~~G  173 (507)
                      .|++-+++...+++..+
T Consensus       275 ivSsQG~~sf~Vy~r~~  291 (381)
T PF02333_consen  275 IVSSQGDNSFAVYDREG  291 (381)
T ss_dssp             EEEEGGGTEEEEEESST
T ss_pred             EEEcCCCCeEEEEecCC
Confidence            99999999999999554

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=91.27  E-value=12  Score=38.86  Aligned_cols=74  Identities=19%  Similarity=0.207  Sum_probs=51.8

Q ss_pred             eecCCCCCCCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCC
Q 010579           75 VFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRG  154 (507)
Q Consensus        75 ~~~G~~~~~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dG  154 (507)
                      .+.|...  .=..|++.|-++.|++-+....|+.++...   .+          +.|-       -.+..+--+|+||+|
T Consensus        95 YF~GH~~--~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~---~~----------cqg~-------l~~~~~pi~AfDp~G  152 (311)
T KOG1446|consen   95 YFPGHKK--RVNSLSVSPKDDTFLSSSLDKTVRLWDLRV---KK----------CQGL-------LNLSGRPIAAFDPEG  152 (311)
T ss_pred             EcCCCCc--eEEEEEecCCCCeEEecccCCeEEeeEecC---CC----------CceE-------EecCCCcceeECCCC
Confidence            3444444  455788888778888888888888888751   11          1111       123345568999999


Q ss_pred             CEEEEeCCCCeEEEEc
Q 010579          155 NIYIADTMNMAIRKIS  170 (507)
Q Consensus       155 nIYVADs~N~rIrk~d  170 (507)
                      .|+.+-.++..|..+|
T Consensus       153 LifA~~~~~~~IkLyD  168 (311)
T KOG1446|consen  153 LIFALANGSELIKLYD  168 (311)
T ss_pred             cEEEEecCCCeEEEEE
Confidence            9999888888999999

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=90.57  E-value=14  Score=34.13  Aligned_cols=112  Identities=20%  Similarity=0.227  Sum_probs=66.7

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  163 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N  163 (507)
                      ....+.+.+++.++++...++.|..++...   +.......      +         .-.....+++++++.++++-..+
T Consensus        95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~------~---------~~~~i~~~~~~~~~~~l~~~~~~  156 (289)
T cd00200          95 YVSSVAFSPDGRILSSSSRDKTIKVWDVET---GKCLTTLR------G---------HTDWVNSVAFSPDGTFVASSSQD  156 (289)
T ss_pred             cEEEEEEcCCCCEEEEecCCCeEEEEECCC---cEEEEEec------c---------CCCcEEEEEEcCcCCEEEEEcCC
Confidence            466788888878888777678888888751   22111111      0         11246789999988877776667


Q ss_pred             CeEEEEcCC-C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCC-eEEEEeCCCCeEEEEECCCCc
Q 010579          164 MAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDDD  232 (507)
Q Consensus       164 ~rIrk~d~~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G-~LyVaD~gn~rIr~I~l~~~~  232 (507)
                      +.|+.++.. +  +..+...                 -.....+.+ .+++ .|+++.. ++.|+.++.....
T Consensus       157 ~~i~i~d~~~~~~~~~~~~~-----------------~~~i~~~~~-~~~~~~l~~~~~-~~~i~i~d~~~~~  210 (289)
T cd00200         157 GTIKLWDLRTGKCVATLTGH-----------------TGEVNSVAF-SPDGEKLLSSSS-DGTIKLWDLSTGK  210 (289)
T ss_pred             CcEEEEEccccccceeEecC-----------------ccccceEEE-CCCcCEEEEecC-CCcEEEEECCCCc
Confidence            788888854 2  3333210                 012345554 4444 4544444 7778888776543

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=90.48  E-value=28  Score=37.45  Aligned_cols=64  Identities=14%  Similarity=0.105  Sum_probs=42.1

Q ss_pred             CCceEEEEcCCCeEEEEeCCCCeEEEEECCCCcee------eCCCCCc---cceEEEEecceeEEehhHHHhcc
Q 010579          200 NDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS------DNYDDTF---HLGIFVLVAAAFFGYMLALLQRR  264 (507)
Q Consensus       200 ~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~------~~~~~G~---p~gIa~~~~a~~~gy~~~~lq~~  264 (507)
                      .+-++++++..+.|||++.. .-||++..+.+.-.      ...+.++   ..||++..+..--||.++.-|..
T Consensus       209 Q~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~  281 (381)
T PF02333_consen  209 QPEGCVVDDETGRLYVGEED-VGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGD  281 (381)
T ss_dssp             -EEEEEEETTTTEEEEEETT-TEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGG
T ss_pred             cceEEEEecccCCEEEecCc-cEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCC
Confidence            56788888889999999985 79999998754311      1222333   45888876555557777776654

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=90.00  E-value=1.2  Score=37.93  Aligned_cols=33  Identities=18%  Similarity=0.112  Sum_probs=28.6

Q ss_pred             CCCCceEEEEcCCCeEEEEeCCCCeEEEEECCC
Q 010579          198 FSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  230 (507)
Q Consensus       198 f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~  230 (507)
                      |..|+||++.++...|||++...+.|+.+..+.
T Consensus        53 ~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~   85 (86)
T PF01731_consen   53 FSFANGIAISPDKKYLYVASSLAHSIHVYKRHK   85 (86)
T ss_pred             CCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence            678999997667789999999999999988654

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]

Probab=89.72  E-value=1.2  Score=48.39  Aligned_cols=127  Identities=17%  Similarity=0.184  Sum_probs=83.5

Q ss_pred             CCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           83 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      .-|++..+|.+|+.+++|-.-|.+.++.+.   ...+.++.|.+ -..|     .....|+.|..++|..+|-|+|+|..
T Consensus       168 qvhyg~t~df~~~~d~TgV~mH~t~kp~pk---la~~~L~l~~~-tvp~-----~~~~~f~~~tsc~v~~n~~ihvfa~r  238 (501)
T KOG3567|consen  168 QVHYGLTIDFDGNYDVTGVGMHQTEKPQPK---LAKTMLLLGDG-TVPG-----EGTKHFETPTSCAVEENGPIHVFAYR  238 (501)
T ss_pred             EeccccccCCCCCcccccceeeeeccCCch---hhceEEeecCC-ccCC-----CCccccCCCceEEEecCcceeeEEee
Confidence            478899999999999999999999999886   34555555442 1112     23356889999999999999999987


Q ss_pred             -CCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcC-CCeEEEEeCCCCeEEEEECC
Q 010579          163 -NMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGS-SCSLLVIDRGNQAIREIQLH  229 (507)
Q Consensus       163 -N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~-~G~LyVaD~gn~rIr~I~l~  229 (507)
                       |.+|.+.+-.|  |.-.--|.+..     -| .     ..|.-.-++.+ ...|-|+|..|.++|.+.-.
T Consensus       239 ~hTh~Lgk~vsG~lv~q~~~g~w~~-----ig-~-----r~Pq~pqlf~~v~~~~~iadgD~~~vrC~~~s  298 (501)
T KOG3567|consen  239 CHTHILGKVVSGYLVAQKHEGHWTL-----IG-R-----RDPQLPQLFEPVNHIVCVADGDNQRVRCFFQS  298 (501)
T ss_pred             eeehhhcceeeeeEeeeccCcceee-----cc-c-----cCCCchhhhcCCCcceeeecCCceEEEEEEcc
Confidence             55677777666  11110111100     00 0     02332222233 34788899999999999755

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=89.23  E-value=32  Score=37.58  Aligned_cols=112  Identities=15%  Similarity=0.135  Sum_probs=68.2

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  163 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N  163 (507)
                      .=+..+|.|||.||.+-..++.|..++...   +.  .++    .+.|+ .|        --..|++..+|...++-+..
T Consensus       349 ~~ts~~fHpDgLifgtgt~d~~vkiwdlks---~~--~~a----~Fpgh-t~--------~vk~i~FsENGY~Lat~add  410 (506)
T KOG0289|consen  349 EYTSAAFHPDGLIFGTGTPDGVVKIWDLKS---QT--NVA----KFPGH-TG--------PVKAISFSENGYWLATAADD  410 (506)
T ss_pred             eeEEeeEcCCceEEeccCCCceEEEEEcCC---cc--ccc----cCCCC-CC--------ceeEEEeccCceEEEEEecC
Confidence            456789999999999999999999998752   11  111    12222 11        23579999999877777777


Q ss_pred             CeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCC
Q 010579          164 MAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  230 (507)
Q Consensus       164 ~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~  230 (507)
                      ..|+.+|-.-   +.++.--                .+..-..+.+ |..|..+++-...=+|..+...+
T Consensus       411 ~~V~lwDLRKl~n~kt~~l~----------------~~~~v~s~~f-D~SGt~L~~~g~~l~Vy~~~k~~  463 (506)
T KOG0289|consen  411 GSVKLWDLRKLKNFKTIQLD----------------EKKEVNSLSF-DQSGTYLGIAGSDLQVYICKKKT  463 (506)
T ss_pred             CeEEEEEehhhcccceeecc----------------ccccceeEEE-cCCCCeEEeecceeEEEEEeccc
Confidence            7799999433   4555321                1112334554 56666555553334455554333

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=88.34  E-value=11  Score=39.00  Aligned_cols=132  Identities=17%  Similarity=0.161  Sum_probs=79.1

Q ss_pred             CCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCC-CCccccCCCCcccccCCCcceEEEc----CCCCEE
Q 010579           83 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSP-EGYYGHVDGRPRGARMNHPKGLAVD----DRGNIY  157 (507)
Q Consensus        83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~-~G~~G~~dG~~~~a~fn~P~GIaVd----~dGnIY  157 (507)
                      .+-++|..+++|+++|+-...+.|++|+..   +|.+.-..|.. .+.+..     ....|..-.+..+-    +++.|-
T Consensus       144 ~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~---tG~I~W~lgG~~~~df~~-----~~~~f~~QHdar~~~~~~~~~~Is  215 (299)
T PF14269_consen  144 FHINSVDKDDDGDYLISSRNTSTIYKIDPS---TGKIIWRLGGKRNSDFTL-----PATNFSWQHDARFLNESNDDGTIS  215 (299)
T ss_pred             cEeeeeeecCCccEEEEecccCEEEEEECC---CCcEEEEeCCCCCCcccc-----cCCcEeeccCCEEeccCCCCCEEE
Confidence            577888899999999999999999999976   46666555543 111111     22345544455554    566677


Q ss_pred             EEeC----------CCCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEE
Q 010579          158 IADT----------MNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIRE  225 (507)
Q Consensus       158 VADs----------~N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~  225 (507)
                      |-|-          ...+|..+|...  ++.+..-. ....+.......+++         .=++|+++|....+++|..
T Consensus       216 lFDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~-~~~~~~~s~~~G~~Q---------~L~nGn~li~~g~~g~~~E  285 (299)
T PF14269_consen  216 LFDNANSDFNGTEPSRGLVLELDPETMTVTLVREYS-DHPDGFYSPSQGSAQ---------RLPNGNVLIGWGNNGRISE  285 (299)
T ss_pred             EEcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEee-cCCCcccccCCCcce---------ECCCCCEEEecCCCceEEE
Confidence            7665          245677777554  33221110 000000000011111         2256999999999999999


Q ss_pred             EECCCCc
Q 010579          226 IQLHDDD  232 (507)
Q Consensus       226 I~l~~~~  232 (507)
                      ++.++..
T Consensus       286 ~~~~G~v  292 (299)
T PF14269_consen  286 FTPDGEV  292 (299)
T ss_pred             ECCCCCE
Confidence            9988754

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=88.33  E-value=34  Score=35.41  Aligned_cols=88  Identities=20%  Similarity=0.287  Sum_probs=59.2

Q ss_pred             cCCCcceEEEcCCCCEEEEeCCCCeEEEEc-CCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEE---cCCCeEEE
Q 010579          141 RMNHPKGLAVDDRGNIYIADTMNMAIRKIS-DTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYV---GSSCSLLV  215 (507)
Q Consensus       141 ~fn~P~GIaVd~dGnIYVADs~N~rIrk~d-~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~v---d~~G~LyV  215 (507)
                      -.-+.++|..+.+|+++|+-...+.|.+|+ .+| |.=..||+.+.  .+..   ....|..-++..++   +.++.|.|
T Consensus       142 D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~--df~~---~~~~f~~QHdar~~~~~~~~~~Isl  216 (299)
T PF14269_consen  142 DYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNS--DFTL---PATNFSWQHDARFLNESNDDGTISL  216 (299)
T ss_pred             CccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCC--cccc---cCCcEeeccCCEEeccCCCCCEEEE
Confidence            356788999999999999999999999999 666 43333554221  1111   44557777776665   36778888


Q ss_pred             EeC----------CCCeEEEEECCCCce
Q 010579          216 IDR----------GNQAIREIQLHDDDC  233 (507)
Q Consensus       216 aD~----------gn~rIr~I~l~~~~~  233 (507)
                      .|.          ..++|..+++....+
T Consensus       217 FDN~~~~~~~~~~s~~~v~~ld~~~~~~  244 (299)
T PF14269_consen  217 FDNANSDFNGTEPSRGLVLELDPETMTV  244 (299)
T ss_pred             EcCCCCCCCCCcCCCceEEEEECCCCEE
Confidence            887          345666666654433

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=88.08  E-value=0.42  Score=34.28  Aligned_cols=21  Identities=43%  Similarity=0.749  Sum_probs=17.3

Q ss_pred             CCcceEEEcCCCCEEEEeCCC
Q 010579          143 NHPKGLAVDDRGNIYIADTMN  163 (507)
Q Consensus       143 n~P~GIaVd~dGnIYVADs~N  163 (507)
                      ..+.+|++|++|||||+=..+
T Consensus        13 ~~~~~IavD~~GNiYv~G~T~   33 (38)
T PF06739_consen   13 DYGNGIAVDSNGNIYVTGYTN   33 (38)
T ss_pred             eeEEEEEECCCCCEEEEEeec
Confidence            368899999999999985443

SBBP stands for Seven Bladed Beta Propeller.

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=87.22  E-value=26  Score=36.53  Aligned_cols=121  Identities=12%  Similarity=0.030  Sum_probs=74.8

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  163 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N  163 (507)
                      .+--+|+||+|-++.+-.++..|..++...-..|-..++.-             .......=++|-+.+||...+.-+.+
T Consensus       142 ~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i-------------~~~~~~ew~~l~FS~dGK~iLlsT~~  208 (311)
T KOG1446|consen  142 GRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSI-------------TDNDEAEWTDLEFSPDGKSILLSTNA  208 (311)
T ss_pred             CCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEcc-------------CCCCccceeeeEEcCCCCEEEEEeCC
Confidence            45567899999998888887788888864110111111110             11223445689999999966666677


Q ss_pred             CeEEEEc-CCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCc
Q 010579          164 MAIRKIS-DTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD  232 (507)
Q Consensus       164 ~rIrk~d-~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~  232 (507)
                      +-|+.+| -+|  ..++.+-.+              ..+.|-+-+ ..+++..++.-.+.++|....++.+.
T Consensus       209 s~~~~lDAf~G~~~~tfs~~~~--------------~~~~~~~a~-ftPds~Fvl~gs~dg~i~vw~~~tg~  265 (311)
T KOG1446|consen  209 SFIYLLDAFDGTVKSTFSGYPN--------------AGNLPLSAT-FTPDSKFVLSGSDDGTIHVWNLETGK  265 (311)
T ss_pred             CcEEEEEccCCcEeeeEeeccC--------------CCCcceeEE-ECCCCcEEEEecCCCcEEEEEcCCCc
Confidence            8889998 456  455543211              112333333 45677777777778888888876533

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=86.78  E-value=3.4  Score=44.61  Aligned_cols=77  Identities=21%  Similarity=0.288  Sum_probs=54.3

Q ss_pred             CCeeEEEEcCC-------CcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC
Q 010579           83 MEPFSVAVSPS-------GELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN  155 (507)
Q Consensus        83 ~~P~gIaVd~d-------G~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn  155 (507)
                      ..|.|++|-..       |.|||+-.....+.+.++++    ...++....  ..+  |.      -..|.+|++.+||.
T Consensus       314 ~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g----~~~~~~~~f--l~~--d~------~gR~~dV~v~~DGa  379 (399)
T COG2133         314 IAPSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDG----NYKVVLTGF--LSG--DL------GGRPRDVAVAPDGA  379 (399)
T ss_pred             cccceeEEecCCcCccccCcEEEEeecceeEEEeccCC----CcceEEEEE--Eec--CC------CCcccceEECCCCe
Confidence            45789999742       68999999888888888873    333332211  111  11      14899999999999


Q ss_pred             EEEEeCC-CCeEEEEcCCC
Q 010579          156 IYIADTM-NMAIRKISDTG  173 (507)
Q Consensus       156 IYVADs~-N~rIrk~d~~G  173 (507)
                      |||+|-. +.+|.++...+
T Consensus       380 llv~~D~~~g~i~Rv~~~~  398 (399)
T COG2133         380 LLVLTDQGDGRILRVSYAG  398 (399)
T ss_pred             EEEeecCCCCeEEEecCCC
Confidence            9999877 66999988643

>PTZ00421 coronin; Provisional

Probab=86.59  E-value=26  Score=38.85  Aligned_cols=115  Identities=17%  Similarity=0.172  Sum_probs=67.8

Q ss_pred             eeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCC-----CccEEEecCCCCccccCCCCcccccCCCcceEEEcCCC-CEE
Q 010579           85 PFSVAVSP-SGELLVLDSENSNIYKISTSLSPY-----SRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRG-NIY  157 (507)
Q Consensus        85 P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~-----g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dG-nIY  157 (507)
                      -.+|+++| +++++++-+..+.|+.++......     ..+..+.|       +         -.....|++.+++ +++
T Consensus        78 V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~g-------H---------~~~V~~l~f~P~~~~iL  141 (493)
T PTZ00421         78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQG-------H---------TKKVGIVSFHPSAMNVL  141 (493)
T ss_pred             EEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecC-------C---------CCcEEEEEeCcCCCCEE
Confidence            46899998 888888888889999998652100     00111111       1         1234578888875 577


Q ss_pred             EEeCCCCeEEEEcCC-C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCce
Q 010579          158 IADTMNMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  233 (507)
Q Consensus       158 VADs~N~rIrk~d~~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~  233 (507)
                      ++=+..+.|+.+|-. +  +.++.+..                 ..-.+|++ ..+|.++++-..++.|+.+++....+
T Consensus       142 aSgs~DgtVrIWDl~tg~~~~~l~~h~-----------------~~V~sla~-spdG~lLatgs~Dg~IrIwD~rsg~~  202 (493)
T PTZ00421        142 ASAGADMVVNVWDVERGKAVEVIKCHS-----------------DQITSLEW-NLDGSLLCTTSKDKKLNIIDPRDGTI  202 (493)
T ss_pred             EEEeCCCEEEEEECCCCeEEEEEcCCC-----------------CceEEEEE-ECCCCEEEEecCCCEEEEEECCCCcE
Confidence            776667888888843 3  33332110                 01234443 44566666666667777777665443

>PRK04792 tolB translocation protein TolB; Provisional

Probab=86.17  E-value=55  Score=35.54  Aligned_cols=67  Identities=13%  Similarity=0.213  Sum_probs=38.3

Q ss_pred             EEEEcCCCc-EEEEeC--CCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-E-EEEeC
Q 010579           87 SVAVSPSGE-LLVLDS--ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-I-YIADT  161 (507)
Q Consensus        87 gIaVd~dG~-LYVaDs--~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-I-YVADs  161 (507)
                      ..+++|||. |+++..  ++..|++++..+   +.+..+....                ......++++||. | |.+|.
T Consensus       266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t---g~~~~lt~~~----------------~~~~~p~wSpDG~~I~f~s~~  326 (448)
T PRK04792        266 APRFSPDGKKLALVLSKDGQPEIYVVDIAT---KALTRITRHR----------------AIDTEPSWHPDGKSLIFTSER  326 (448)
T ss_pred             CeeECCCCCEEEEEEeCCCCeEEEEEECCC---CCeEECccCC----------------CCccceEECCCCCEEEEEECC
Confidence            468899987 655432  334799998763   3333322110                1223467888887 4 44443


Q ss_pred             -CCCeEEEEcCC
Q 010579          162 -MNMAIRKISDT  172 (507)
Q Consensus       162 -~N~rIrk~d~~  172 (507)
                       ++..|..++.+
T Consensus       327 ~g~~~Iy~~dl~  338 (448)
T PRK04792        327 GGKPQIYRVNLA  338 (448)
T ss_pred             CCCceEEEEECC
Confidence             34578888854

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=85.91  E-value=57  Score=35.50  Aligned_cols=115  Identities=19%  Similarity=0.241  Sum_probs=75.7

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      .-+.++|+++|+++++-+..+.|+.++...   +.. ..+.+..                ..-.++++.++|+++++-+.
T Consensus       248 ~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~---~~~~~~l~~hs----------------~~is~~~f~~d~~~l~s~s~  308 (456)
T KOG0266|consen  248 YVTSVAFSPDGNLLVSGSDDGTVRIWDVRT---GECVRKLKGHS----------------DGISGLAFSPDGNLLVSASY  308 (456)
T ss_pred             ceEEEEecCCCCEEEEecCCCcEEEEeccC---CeEEEeeeccC----------------CceEEEEECCCCCEEEEcCC
Confidence            458999999999999999999999999863   222 2222221                13458999999998887787


Q ss_pred             CCeEEEEcCCC-cE----EEecCcccCCCCCCCCCccCccCCCC-ceEEEEcCCCeEEEEeCCCCeEEEEECCCCcee
Q 010579          163 NMAIRKISDTG-VT----TIAGGKWSRGVGHVDGPSEDAKFSND-FDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS  234 (507)
Q Consensus       163 N~rIrk~d~~G-Vs----tIaGG~~g~~~G~~dg~~~~a~f~~P-~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~  234 (507)
                      .+.|+++|..+ ..    ++.+...               -. | ..+. ...++..+++-..++.|+..++....|.
T Consensus       309 d~~i~vwd~~~~~~~~~~~~~~~~~---------------~~-~~~~~~-fsp~~~~ll~~~~d~~~~~w~l~~~~~~  369 (456)
T KOG0266|consen  309 DGTIRVWDLETGSKLCLKLLSGAEN---------------SA-PVTSVQ-FSPNGKYLLSASLDRTLKLWDLRSGKSV  369 (456)
T ss_pred             CccEEEEECCCCceeeeecccCCCC---------------CC-ceeEEE-ECCCCcEEEEecCCCeEEEEEccCCcce
Confidence            99999999654 31    2222110               00 2 2333 4566666666666777777777655443

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=85.77  E-value=29  Score=32.00  Aligned_cols=111  Identities=18%  Similarity=0.214  Sum_probs=64.6

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT  161 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs  161 (507)
                      ....+++++++.++++-..++.|+.++...   +.. ..+..                .-.....++++++|+ |+++. 
T Consensus       137 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~---~~~~~~~~~----------------~~~~i~~~~~~~~~~~l~~~~-  196 (289)
T cd00200         137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRT---GKCVATLTG----------------HTGEVNSVAFSPDGEKLLSSS-  196 (289)
T ss_pred             cEEEEEEcCcCCEEEEEcCCCcEEEEEccc---cccceeEec----------------CccccceEEECCCcCEEEEec-
Confidence            466777888777666666567777777641   111 11111                012456899999986 55554 


Q ss_pred             CCCeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCc
Q 010579          162 MNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD  232 (507)
Q Consensus       162 ~N~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~  232 (507)
                      .++.|+.++...   +..+.+                 .-.....+++ .+++.++++...++.|+.++.....
T Consensus       197 ~~~~i~i~d~~~~~~~~~~~~-----------------~~~~i~~~~~-~~~~~~~~~~~~~~~i~i~~~~~~~  252 (289)
T cd00200         197 SDGTIKLWDLSTGKCLGTLRG-----------------HENGVNSVAF-SPDGYLLASGSEDGTIRVWDLRTGE  252 (289)
T ss_pred             CCCcEEEEECCCCceecchhh-----------------cCCceEEEEE-cCCCcEEEEEcCCCcEEEEEcCCce
Confidence            478899988543   222211                 0113345554 4446777776667788888876543

>PRK02888 nitrous-oxide reductase; Validated

Probab=85.39  E-value=19  Score=41.12  Aligned_cols=32  Identities=9%  Similarity=0.072  Sum_probs=27.8

Q ss_pred             CCCceEEEEcCCCeEEEEeCCCCeEEEEECCC
Q 010579          199 SNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  230 (507)
Q Consensus       199 ~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~  230 (507)
                      .+|+||.+.++...+||+....+.|..|+...
T Consensus       321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k  352 (635)
T PRK02888        321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK  352 (635)
T ss_pred             CCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence            47999997666667999999999999999877

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=85.27  E-value=8.3  Score=45.46  Aligned_cols=133  Identities=17%  Similarity=0.177  Sum_probs=93.0

Q ss_pred             CeeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC-CCCEEEEeC
Q 010579           84 EPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADT  161 (507)
Q Consensus        84 ~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~-dGnIYVADs  161 (507)
                      ....+.++. ++.+|-+|....+|.+...++...-   -+.+               .....|.++++|- .+++|.+|.
T Consensus       438 ~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~---~~~~---------------~g~~~~~~lavD~~~~~~y~tDe  499 (877)
T KOG1215|consen  438 NAVALDFDVLNNRIYWADLSDEKICRASQDGSSEC---ELCG---------------DGLCIPEGLAVDWIGDNIYWTDE  499 (877)
T ss_pred             cceEEEEEecCCEEEEEeccCCeEeeeccCCCccc---eEec---------------cCccccCcEEEEeccCCceeccc
Confidence            344444543 4579999998888888887643211   1122               1256899999997 567999999


Q ss_pred             CCCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCC-CCeEEEEECCCCceee--C
Q 010579          162 MNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG-NQAIREIQLHDDDCSD--N  236 (507)
Q Consensus       162 ~N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~g-n~rIr~I~l~~~~~~~--~  236 (507)
                      .+..|.+.+.+|  ..+++..                .+..|..+++.+..+.+|..|.+ ..+|.+-.+++.....  .
T Consensus       500 ~~~~i~v~~~~g~~~~vl~~~----------------~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~  563 (877)
T KOG1215|consen  500 GNCLIEVADLDGSSRKVLVSK----------------DLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLVT  563 (877)
T ss_pred             CCceeEEEEccCCceeEEEec----------------CCCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceEEEe
Confidence            999999998555  2344332                13467788877788999999998 5578888888866544  2


Q ss_pred             CCCCccceEEEEec
Q 010579          237 YDDTFHLGIFVLVA  250 (507)
Q Consensus       237 ~~~G~p~gIa~~~~  250 (507)
                      .+..+|+|++.+..
T Consensus       564 ~~~~~p~glt~d~~  577 (877)
T KOG1215|consen  564 NGILWPNGLTIDYE  577 (877)
T ss_pred             CCccCCCcceEEee
Confidence            33568999888764

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=84.08  E-value=22  Score=39.51  Aligned_cols=132  Identities=17%  Similarity=0.227  Sum_probs=80.6

Q ss_pred             CCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           83 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      ..|+.-++++||.++.+-+.++.|+.++.. +..-++...++..     +.+|       ..-+.|+++.||+++.+-.+
T Consensus       318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~-~~~v~p~~~vk~A-----H~~g-------~~Itsi~FS~dg~~LlSRg~  384 (641)
T KOG0772|consen  318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKG-SRTVRPVMKVKDA-----HLPG-------QDITSISFSYDGNYLLSRGF  384 (641)
T ss_pred             cCceeeecCCCcchhhhcccCCceeeeecC-CcccccceEeeec-----cCCC-------CceeEEEeccccchhhhccC
Confidence            367788899999999998999999999863 2222222222221     1111       25678999999999999888


Q ss_pred             CCeEEEEcCCC----cEEEecCcccCCCCCCCCCccCccCCCCceEEEE-------cCCCeEEEEeCCC-CeEEEEECCC
Q 010579          163 NMAIRKISDTG----VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYV-------GSSCSLLVIDRGN-QAIREIQLHD  230 (507)
Q Consensus       163 N~rIrk~d~~G----VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~v-------d~~G~LyVaD~gn-~rIr~I~l~~  230 (507)
                      .+.+++.|-..    +.+..|-.+-       -+..++.|+-..-|++.       ...|.|+|.|+.. ..|++|+..+
T Consensus       385 D~tLKvWDLrq~kkpL~~~tgL~t~-------~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~  457 (641)
T KOG0772|consen  385 DDTLKVWDLRQFKKPLNVRTGLPTP-------FPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIST  457 (641)
T ss_pred             CCceeeeeccccccchhhhcCCCcc-------CCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCC
Confidence            88888887433    2222221111       12234444333333321       2345799998754 5778888776


Q ss_pred             Ccee
Q 010579          231 DDCS  234 (507)
Q Consensus       231 ~~~~  234 (507)
                      ..|.
T Consensus       458 aSvv  461 (641)
T KOG0772|consen  458 ASVV  461 (641)
T ss_pred             ceEE
Confidence            5543

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=83.50  E-value=4.9  Score=42.12  Aligned_cols=55  Identities=24%  Similarity=0.300  Sum_probs=41.4

Q ss_pred             CCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEE
Q 010579           83 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIA  159 (507)
Q Consensus        83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVA  159 (507)
                      ..|++..+. +|.|||+|++.+.|.+++++   .|+...++--+                ..|.||++.  |++.|.
T Consensus       203 smPhSPRWh-dgrLwvldsgtGev~~vD~~---~G~~e~Va~vp----------------G~~rGL~f~--G~llvV  257 (335)
T TIGR03032       203 SMPHSPRWY-QGKLWLLNSGRGELGYVDPQ---AGKFQPVAFLP----------------GFTRGLAFA--GDFAFV  257 (335)
T ss_pred             cCCcCCcEe-CCeEEEEECCCCEEEEEcCC---CCcEEEEEECC----------------CCCccccee--CCEEEE
Confidence            367777764 68999999999999999987   36666665332                268899998  776655

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=82.42  E-value=9.8  Score=38.13  Aligned_cols=114  Identities=13%  Similarity=0.234  Sum_probs=58.5

Q ss_pred             EEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc----EEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           87 SVAVSPSGELLVLDSENSNIYKISTSLSPYSRP----KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        87 gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i----~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      .|++++.|.||..+. ++.++|.....+.....    ...+|              ....+...-|..+++|.||.-+..
T Consensus        85 ~i~~d~~G~LYaV~~-~G~lyR~~~~~~~~~~W~~~~~~~iG--------------~~GW~~f~~vfa~~~GvLY~i~~d  149 (229)
T PF14517_consen   85 FIFFDPTGVLYAVTP-DGKLYRHPRPTNGSDNWIGGSGKKIG--------------GTGWNDFDAVFAGPNGVLYAITPD  149 (229)
T ss_dssp             EEEE-TTS-EEEEET-T-EEEEES---STT--HHH-HSEEEE---------------SSGGGEEEEEE-TTS-EEEEETT
T ss_pred             EEEecCCccEEEecc-ccceeeccCCCccCcchhhccceecc--------------cCCCccceEEEeCCCccEEEEcCC
Confidence            899999999998876 57888887653221111    01111              112455678999999999999965


Q ss_pred             CCeEEEEc-CCC-------cEEEec-CcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCce
Q 010579          163 NMAIRKIS-DTG-------VTTIAG-GKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  233 (507)
Q Consensus       163 N~rIrk~d-~~G-------VstIaG-G~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~  233 (507)
                      . |+.+.. +.+       .+.+++ +.                ...+.-|. ..+++.||.+| .+++|.+-......|
T Consensus       150 g-~~~~~~~p~~~~~~W~~~s~~v~~~g----------------w~~~~~i~-~~~~g~L~~V~-~~G~lyr~~~p~~~~  210 (229)
T PF14517_consen  150 G-RLYRRYRPDGGSDRWLSGSGLVGGGG----------------WDSFHFIF-FSPDGNLWAVK-SNGKLYRGRPPQNGC  210 (229)
T ss_dssp             E--EEEE---SSTT--HHHH-EEEESSS----------------GGGEEEEE-E-TTS-EEEE--ETTEEEEES---STT
T ss_pred             C-ceEEeCCCCCCCCccccccceeccCC----------------cccceEEe-eCCCCcEEEEe-cCCEEeccCCcccCC
Confidence            5 666663 221       233322 21                12234454 57889999994 578888777665554


Q ss_pred             e
Q 010579          234 S  234 (507)
Q Consensus       234 ~  234 (507)
                      .
T Consensus       211 ~  211 (229)
T PF14517_consen  211 P  211 (229)
T ss_dssp             -
T ss_pred             c
Confidence            3

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=82.25  E-value=2.8  Score=30.01  Aligned_cols=22  Identities=23%  Similarity=0.235  Sum_probs=18.4

Q ss_pred             CCeeEEEEcCCCcEEEEeCCCC
Q 010579           83 MEPFSVAVSPSGELLVLDSENS  104 (507)
Q Consensus        83 ~~P~gIaVd~dG~LYVaDs~n~  104 (507)
                      ..+.+|++|++|++||+-..++
T Consensus        13 ~~~~~IavD~~GNiYv~G~T~~   34 (38)
T PF06739_consen   13 DYGNGIAVDSNGNIYVTGYTNG   34 (38)
T ss_pred             eeEEEEEECCCCCEEEEEeecC
Confidence            4699999999999999876543

SBBP stands for Seven Bladed Beta Propeller.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=81.84  E-value=4.1  Score=28.44  Aligned_cols=39  Identities=15%  Similarity=0.254  Sum_probs=27.1

Q ss_pred             CCCeEEEEeCCCCeEEEEECCCCceee-CCCCCccceEEE
Q 010579          209 SSCSLLVIDRGNQAIREIQLHDDDCSD-NYDDTFHLGIFV  247 (507)
Q Consensus       209 ~~G~LyVaD~gn~rIr~I~l~~~~~~~-~~~~G~p~gIa~  247 (507)
                      +.+.|||++.+.+.|..|++....... ......|.+|++
T Consensus         2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            456899999999999999987655433 222335666654

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=81.70  E-value=95  Score=34.79  Aligned_cols=151  Identities=20%  Similarity=0.232  Sum_probs=84.9

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCc---------cEEEecCCCC---ccccC----------CCCccc--
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSR---------PKLVAGSPEG---YYGHV----------DGRPRG--  139 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~---------i~~vaG~~~G---~~G~~----------dG~~~~--  139 (507)
                      .=+.+++.+||.-+++-+..++|..++.......+         +..++-...+   ..|-.          +|....  
T Consensus       322 ~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~  401 (603)
T KOG0318|consen  322 SITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEV  401 (603)
T ss_pred             ceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccce
Confidence            45688899988877777777889888865332111         1111111101   01110          111111  


Q ss_pred             ccC-CCcceEEEcCCCCEEEEeCCCCeEEEEc-CCCcEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEe
Q 010579          140 ARM-NHPKGLAVDDRGNIYIADTMNMAIRKIS-DTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVID  217 (507)
Q Consensus       140 a~f-n~P~GIaVd~dGnIYVADs~N~rIrk~d-~~GVstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD  217 (507)
                      ..| ..|.++|+.++|.+.|.-...+ |..+. ..+++++--                  -..|.++| +.++++....-
T Consensus       402 ~~lg~QP~~lav~~d~~~avv~~~~~-iv~l~~~~~~~~~~~------------------~y~~s~vA-v~~~~~~vaVG  461 (603)
T KOG0318|consen  402 VKLGSQPKGLAVLSDGGTAVVACISD-IVLLQDQTKVSSIPI------------------GYESSAVA-VSPDGSEVAVG  461 (603)
T ss_pred             eecCCCceeEEEcCCCCEEEEEecCc-EEEEecCCcceeecc------------------ccccceEE-EcCCCCEEEEe
Confidence            133 5899999999987555544333 55555 444666521                  12566777 56777777776


Q ss_pred             CCCCeEEEEECCCCc-eee---CCCCCccceEEEEecceeE
Q 010579          218 RGNQAIREIQLHDDD-CSD---NYDDTFHLGIFVLVAAAFF  254 (507)
Q Consensus       218 ~gn~rIr~I~l~~~~-~~~---~~~~G~p~gIa~~~~a~~~  254 (507)
                      -..++|+.+++.++. |..   ....+-++.|+......|+
T Consensus       462 G~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yl  502 (603)
T KOG0318|consen  462 GQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYL  502 (603)
T ss_pred             cccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEE
Confidence            667789999988855 322   2333445555555444443

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=80.95  E-value=6.3  Score=28.64  Aligned_cols=38  Identities=18%  Similarity=0.142  Sum_probs=31.4

Q ss_pred             CeEEEEeCCCC-eEEEEECCCCceee--CCCCCccceEEEE
Q 010579          211 CSLLVIDRGNQ-AIREIQLHDDDCSD--NYDDTFHLGIFVL  248 (507)
Q Consensus       211 G~LyVaD~gn~-rIr~I~l~~~~~~~--~~~~G~p~gIa~~  248 (507)
                      ++||-+|.+.+ .|.+.++++.....  ......|.|||++
T Consensus         1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD   41 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVD   41 (42)
T ss_dssp             TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEE
T ss_pred             CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEEC
Confidence            57999999999 99999999987544  4456679999986

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=80.58  E-value=42  Score=36.21  Aligned_cols=119  Identities=19%  Similarity=0.205  Sum_probs=76.9

Q ss_pred             eEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCCe
Q 010579           86 FSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMA  165 (507)
Q Consensus        86 ~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~r  165 (507)
                      -.+.|.|+|...++-++...++.+|.++   .++.-.+      .|+         -+.-.-|+..|||....+-+.++.
T Consensus       119 l~~~fsp~g~~l~tGsGD~TvR~WD~~T---eTp~~t~------KgH---------~~WVlcvawsPDgk~iASG~~dg~  180 (480)
T KOG0271|consen  119 LSVQFSPTGSRLVTGSGDTTVRLWDLDT---ETPLFTC------KGH---------KNWVLCVAWSPDGKKIASGSKDGS  180 (480)
T ss_pred             EEEEecCCCceEEecCCCceEEeeccCC---CCcceee------cCC---------ccEEEEEEECCCcchhhccccCCe
Confidence            3678899999999999999999999873   2222211      222         356668999999999999999999


Q ss_pred             EEEEcCC--C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee
Q 010579          166 IRKISDT--G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD  235 (507)
Q Consensus       166 Irk~d~~--G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~  235 (507)
                      |+..|+.  +  ...+.|-+..          ..+--..|..+   ++.++++...+..+.|+..+.....|..
T Consensus       181 I~lwdpktg~~~g~~l~gH~K~----------It~Lawep~hl---~p~~r~las~skDg~vrIWd~~~~~~~~  241 (480)
T KOG0271|consen  181 IRLWDPKTGQQIGRALRGHKKW----------ITALAWEPLHL---VPPCRRLASSSKDGSVRIWDTKLGTCVR  241 (480)
T ss_pred             EEEecCCCCCcccccccCcccc----------eeEEeeccccc---CCCccceecccCCCCEEEEEccCceEEE
Confidence            9999943  2  2333321110          00111234333   3556666666667777777777666654

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=80.38  E-value=7.9  Score=43.43  Aligned_cols=81  Identities=21%  Similarity=0.240  Sum_probs=51.0

Q ss_pred             cccCCCcceEEEcC-CCCEEEEeCCCC----------------eEEEEc-CCC----------cEEEecCcccCCCCCCC
Q 010579          139 GARMNHPKGLAVDD-RGNIYIADTMNM----------------AIRKIS-DTG----------VTTIAGGKWSRGVGHVD  190 (507)
Q Consensus       139 ~a~fn~P~GIaVd~-dGnIYVADs~N~----------------rIrk~d-~~G----------VstIaGG~~g~~~G~~d  190 (507)
                      .+.|..|.+|++.+ .|.+|++.+.|.                .|.++- .++          +...+|.......+. .
T Consensus       413 AT~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~-~  491 (616)
T COG3211         413 ATPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGA-S  491 (616)
T ss_pred             CccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCcccccccc-c
Confidence            46799999999998 577999999876                244443 221          233333221111111 1


Q ss_pred             CCccCccCCCCceEEEEcCCCeEEEEeCCCC
Q 010579          191 GPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQ  221 (507)
Q Consensus       191 g~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~  221 (507)
                      .......|+.|.+|+ +|+.|+|||+.-+++
T Consensus       492 ~~~~~~~f~~PDnl~-fD~~GrLWi~TDg~~  521 (616)
T COG3211         492 ANINANWFNSPDNLA-FDPWGRLWIQTDGSG  521 (616)
T ss_pred             cCcccccccCCCceE-ECCCCCEEEEecCCC
Confidence            122235689999998 599999999865543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	507
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	9e-36
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	6e-07
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	2e-04
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	2e-35
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	6e-18
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	1e-17
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	2e-17
3kya_A	496	Putative phosphatase; structural genomics, joint c	9e-28
3kya_A	496	Putative phosphatase; structural genomics, joint c	2e-16
3kya_A	496	Putative phosphatase; structural genomics, joint c	5e-06
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	1e-17
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	4e-16
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	4e-15
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	4e-13
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	3e-12
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	1e-11
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	1e-11
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	1e-10
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	1e-12
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	2e-12
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	3e-12
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	4e-11
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	1e-05
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	3e-12
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	1e-11
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	2e-09
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	4e-08
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	3e-05
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	1e-10
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	4e-10
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	2e-09
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	3e-07
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	6e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-10
2p4o_A	306	Hypothetical protein; putative lactonase, structur	8e-05
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	7e-04

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430

 Score =  137 bits (345), Expect = 9e-36
 Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 15/189 (7%)

Query: 56  TAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELL-VLDSENSNIYKISTSLS 114
            + ++  + +++      T     +     F +   PSG    ++      I +      
Sbjct: 243 NSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWK 302

Query: 115 --PYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLA---------VDDRGNIYIADTMN 163
               + P +V G   G    VDG  + ARM+ P+              D  + Y  D  N
Sbjct: 303 TKRLTTPYIVCGQQ-GAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDREN 361

Query: 164 MAIRKISDTG-VTTIAGGKWSRGVGHVDG-PSEDAKFSNDFDVVYVGSSCSLLVIDRGNQ 221
             IR ++  G VTT AG   +   G+ DG   ++A+F++   +VY        + DR N+
Sbjct: 362 HCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENR 421

Query: 222 AIREIQLHD 230
            IR+I   +
Sbjct: 422 RIRKIGYEE 430

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430

 Score = 50.9 bits (121), Expect = 6e-07
 Identities = 30/179 (16%), Positives = 50/179 (27%), Gaps = 30/179 (16%)

Query: 54  PKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSG-ELLVLDSENSNIYKISTS 112
           P   V  S     EGG     +  G  FG +   + V+  G +  V+ ++  ++Y +   
Sbjct: 14  PNKPVVISEFSPKEGGLGTRMLLYGENFGSDISKIKVTIGGQDSKVVGAKGKSLYCVV-- 71

Query: 113 LSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDT 172
                                   P  A     K   ++D G        N         
Sbjct: 72  ------------------------PAKAYDGDIKLSILNDEGEEIANTEANEKFVYQKKM 107

Query: 173 GVTTIAGGKWSRG--VGHVDGP-SEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQL 228
            VTT  G  +         DGP  +   F     + +   + + L +       R I  
Sbjct: 108 LVTTFLGTMYDGNTKYDLKDGPFDDCGGFGGAVWLSFDPKNHNHLYLVGEQHPTRLIDF 166

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 18/174 (10%), Positives = 35/174 (20%), Gaps = 47/174 (27%)

Query: 85  PFSVAVSPSGE-LLVLDSENSNIYKI-------STSLSPYSRPKLVAGSPEG-------- 128
              ++  P     L L  E      I       ST  S  S+ + +  + E         
Sbjct: 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITND 198

Query: 129 -------------YYGHVDGRPRGARMNHPKGLAVDDR-GNIYIADTMNMAIRKISDTG- 173
                                    +  +  G       G +Y        + +   T  
Sbjct: 199 QNNNDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ 258

Query: 174 -VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI 226
             T +                       +F + +  S     ++      I   
Sbjct: 259 ETTPLFTI---------------QDSGWEFHIQFHPSGNYAYIVVVNQHYILRS 297

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score =  135 bits (341), Expect = 2e-35
 Identities = 35/145 (24%), Positives = 58/145 (40%), Gaps = 11/145 (7%)

Query: 85  PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNH 144
           P+ +         + D   S++YKI+         +   GS        DG    A    
Sbjct: 270 PYLIYYFVDSNFYMSDQNLSSVYKITPD----GECEWFCGSA-TQKTVQDGLREEALFAQ 324

Query: 145 PKGLAVDDRGNIYIADTM-NMAIRKI--SDTGVTTIAGGKWSRGVGHVDGPSEDAKFSND 201
           P G+ VD+ GN YI D      +RK+   D  V+T+A G+       +DG   +A F+  
Sbjct: 325 PNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA-GQVDVA-SQIDGTPLEATFNYP 382

Query: 202 FDVVYVGSSCSLLVIDRGNQAIREI 226
           +D+          + +   +AIR+ 
Sbjct: 383 YDIC-YDGEGGYWIAEAWGKAIRKY 406

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score = 85.0 bits (210), Expect = 6e-18
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 84  EPFSVAVSPSGELLVLDS-ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARM 142
           +P  + V   G   ++D  +   + K+       S    VAG        +DG P  A  
Sbjct: 324 QPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS---TVAGQV-DVASQIDGTPLEATF 379

Query: 143 NHPKGLAVDDRGNIYIADTMNMAIRKIS 170
           N+P  +  D  G  +IA+    AIRK +
Sbjct: 380 NYPYDICYDGEGGYWIAEAWGKAIRKYA 407

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score = 83.9 bits (207), Expect = 1e-17
 Identities = 29/180 (16%), Positives = 54/180 (30%), Gaps = 30/180 (16%)

Query: 53  SPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSG-----ELLVLDSENSNIY 107
            P   V+  S +  EG    + + +GS FG +   V V            V+  +N+ +Y
Sbjct: 13  DPNQPVTVESFMPVEGKLREKVIVKGSNFGTDKSKVKVYFVDEAAERLSTVIGIDNNTLY 72

Query: 108 KISTSLSPYSRPKLV------------------------AGSPEGYYGHVDGRPRGARMN 143
            ++    P      V                        +GS     G+ DG    A+  
Sbjct: 73  CLAPRQLPGGNRIKVIVDGKEVTTDGTFKYEQAQNVSTISGSA-SKDGNDDGDLASAKFK 131

Query: 144 HPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFD 203
           +  G+A      +      +  +R IS             +G        +   +S  ++
Sbjct: 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWE 191

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score = 83.5 bits (206), Expect = 2e-17
 Identities = 28/159 (17%), Positives = 54/159 (33%), Gaps = 16/159 (10%)

Query: 78  GSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRP 137
           GS F  +  +VA+  + E L     N N  + +      +   L+           +   
Sbjct: 214 GSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT---LIKQL--------ELSG 262

Query: 138 RGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDA 196
                  P  +      N Y++D    ++ KI+  G      G    +     DG  E+A
Sbjct: 263 SLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQK--TVQDGLREEA 320

Query: 197 KFSNDFDVVYVGSSCSLLVIDR-GNQAIREIQLHDDDCS 234
            F+    +  V    +  ++D      +R++ + D   S
Sbjct: 321 LFAQPNGMT-VDEDGNFYIVDGFKGYCLRKLDILDGYVS 358

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Length = 496

 Score =  115 bits (288), Expect = 9e-28
 Identities = 38/192 (19%), Positives = 60/192 (31%), Gaps = 20/192 (10%)

Query: 56  TAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDSENSNIYKIS--TS 112
                S     +                  F + + P+G+        N    +      
Sbjct: 283 IKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEI 342

Query: 113 LSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHP--------KGLAVDDRGNIYIADTMNM 164
              +  P    G      G+ D     ARMN+P             ++  + Y  D +N 
Sbjct: 343 KKEFITPYNFVGGY-KQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNF 401

Query: 165 AIRKISDTG-VTTIAGGKWSRG------VGHVDG-PSEDAKFSNDFDVVYVGSSCSLLVI 216
            +RK++  G V+T AG   S         G  DG   E A+F +   +VY        V 
Sbjct: 402 CVRKVTPEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVH 461

Query: 217 DRGNQAIREIQL 228
           D+    IR I +
Sbjct: 462 DQVGHTIRTISM 473

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Length = 496

 Score = 81.1 bits (199), Expect = 2e-16
 Identities = 24/128 (18%), Positives = 42/128 (32%), Gaps = 21/128 (16%)

Query: 83  MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPE-------GYYGHVDG 135
           ++          +   +D  N  + K++            AG            +G  DG
Sbjct: 380 VKNPDYTGEEEYDFYFVDRLNFCVRKVTPE----GIVSTYAGRGASTSLADGNQWGTDDG 435

Query: 136 RPRG-ARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPS 193
             R  AR     GL  DD     Y+ D +   IR IS      +AG +        + P 
Sbjct: 436 DLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAGDE--------NIPE 487

Query: 194 EDAKFSND 201
           +++   ++
Sbjct: 488 DESTVESN 495

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Length = 496

 Score = 48.0 bits (113), Expect = 5e-06
 Identities = 17/172 (9%), Positives = 34/172 (19%), Gaps = 10/172 (5%)

Query: 64  IKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPK--L 121
           I  +    + +    +                    D     I  I         P   +
Sbjct: 167 IDLKNR-MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYI 225

Query: 122 VAGSPEGYYGHVDGRPRGARMNHPKGLAVDDR-GNIYIADTMNMAIRKIS-DTGVTTIAG 179
           +  + +G +         A      G  +    G +Y        + ++       TI  
Sbjct: 226 IKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKN 285

Query: 180 G-----KWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI 226
           G                    A  S +F +    +          N      
Sbjct: 286 GGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRS 337

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 81.5 bits (202), Expect = 1e-17
 Identities = 34/178 (19%), Positives = 65/178 (36%), Gaps = 41/178 (23%)

Query: 65  KFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAG 124
           K   G   +TV   +    +P  VAV  SG + V D++N+ + K+               
Sbjct: 133 KLAAGSKTQTVLPFTGLN-DPDGVAVDNSGNVYVTDTDNNRVVKLE-------------- 177

Query: 125 SPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKI-SDTGVTTIAGGKWS 183
             E     V        +  P G+AVD+ G +Y+ +     + K+ + +  +T+      
Sbjct: 178 -AESNNQVVLP---FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPF--- 230

Query: 184 RGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTF 241
                ++ P            V V S  ++ V DRGN  + ++        +++    
Sbjct: 231 ---TGLNTPLA----------VAVDSDRTVYVADRGNDRVVKL-----TSLEHHHHHH 270

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 77.7 bits (192), Expect = 4e-16
 Identities = 34/164 (20%), Positives = 62/164 (37%), Gaps = 37/164 (22%)

Query: 64  IKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVA 123
           +K   G T  TV   +    +P  +AV  +G + V D  N  +   + S +    P    
Sbjct: 49  VKLATGSTGTTVLPFNGL-YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP---- 103

Query: 124 GSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKIS-DTGVTTIAGGKW 182
                             +N+P+GLAVD +G +Y+AD  N  + K++  +   T+     
Sbjct: 104 ---------------FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF-- 146

Query: 183 SRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI 226
                           ++   V  V +S ++ V D  N  + ++
Sbjct: 147 -------------TGLNDPDGVA-VDNSGNVYVTDTDNNRVVKL 176

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 74.6 bits (184), Expect = 4e-15
 Identities = 33/174 (18%), Positives = 58/174 (33%), Gaps = 42/174 (24%)

Query: 54  PKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSN-IYKISTS 112
           P  + + +S      G TV   F G  F + P  VAV  +G + V        + K++T 
Sbjct: 2   PSWSPTQAS------GQTVLP-FTGIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATG 54

Query: 113 LSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDT 172
                                        +  P+GLAVD  G +Y+ D  N  +   + +
Sbjct: 55  ------------------STGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGS 96

Query: 173 GVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI 226
              T+                     +    +  V +  ++ V DRGN  + ++
Sbjct: 97  NNQTVLPF---------------DGLNYPEGLA-VDTQGAVYVADRGNNRVVKL 134

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 68.9 bits (169), Expect = 4e-13
 Identities = 21/156 (13%), Positives = 47/156 (30%), Gaps = 33/156 (21%)

Query: 71  TVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYY 130
                ++    G  P  + +     L   +++N++I +I+ +                  
Sbjct: 134 GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNT------------------ 175

Query: 131 GHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVD 190
           G ++  P       P G+   + G ++  + M   I +I+ TG  +              
Sbjct: 176 GKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDIP-----TPNA 230

Query: 191 GPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI 226
            P            +  G +  +   + G   I  I
Sbjct: 231 RPHA----------ITAGKNSEIWFTEWGANQIGRI 256

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 25/154 (16%), Positives = 45/154 (29%), Gaps = 35/154 (22%)

Query: 74  TVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHV 133
             FE      +   + VS  G++   ++  + I K+S                    G  
Sbjct: 53  KEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK------------------GGF 94

Query: 134 DGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKIS-DTGVTTIAGGKWSRGVGHVDGP 192
              P     + P G+     G+I+        I K++ D  +                  
Sbjct: 95  TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDL------------- 141

Query: 193 SEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI 226
               K S    +  +GS  +L   +  N +I  I
Sbjct: 142 --PNKGSYPAFIT-LGSDNALWFTENQNNSIGRI 172

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 18/143 (12%), Positives = 36/143 (25%), Gaps = 35/143 (24%)

Query: 85  PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNH 144
           P+ +  S  G++     + + I  +  S                  G +           
Sbjct: 22  PYGITSSEDGKVWFTQHKANKISSLDQS------------------GRIKEFEVPTPDAK 63

Query: 145 PKGLAVDDRGNIYIADTMNMAIRKIS-DTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFD 203
              L V   G+I+  +     I K+S   G T                       S  + 
Sbjct: 64  VMCLIVSSLGDIWFTENGANKIGKLSKKGGFTEYPLP---------------QPDSGPYG 108

Query: 204 VVYVGSSCSLLVIDRGNQAIREI 226
           +   G +  +         I ++
Sbjct: 109 IT-EGLNGDIWFTQLNGDRIGKL 130

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 17/157 (10%), Positives = 46/157 (29%), Gaps = 35/157 (22%)

Query: 71  TVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYY 130
              T +   +    P+ +    +G++         I K++                    
Sbjct: 92  GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD------------------ 133

Query: 131 GHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG-VTTIAGGKWSRGVGHV 189
           G +       + ++P  + +     ++  +  N +I +I++TG +             + 
Sbjct: 134 GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNTGKLEEYPLP------TNA 187

Query: 190 DGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI 226
             P            +  G+  +L  ++     I  I
Sbjct: 188 AAPVG----------ITSGNDGALWFVEIMGNKIGRI 214

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 11/103 (10%), Positives = 26/103 (25%), Gaps = 18/103 (17%)

Query: 74  TVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHV 133
             +        P  +     G L  ++   + I +I+T+                  G +
Sbjct: 179 EEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT------------------GEI 220

Query: 134 DGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTT 176
                      P  +       I+  +     I +I++     
Sbjct: 221 SEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITNDNTIQ 263

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 67.4 bits (165), Expect = 1e-12
 Identities = 18/142 (12%), Positives = 40/142 (28%), Gaps = 33/142 (23%)

Query: 85  PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNH 144
           P+ + VS  G++ +   + + I  I+                    G +   P       
Sbjct: 17  PYGITVSDKGKVWITQHKANMISCINLD------------------GKITEYPLPTPDAK 58

Query: 145 PKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDV 204
              L +   G ++  +     I +I+  G+                 P+     S  + +
Sbjct: 59  VMCLTISSDGEVWFTENAANKIGRITKKGIIKE-----------YTLPNP---DSAPYGI 104

Query: 205 VYVGSSCSLLVIDRGNQAIREI 226
              G +  +   +     I  I
Sbjct: 105 T-EGPNGDIWFTEMNGNRIGRI 125

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 19/153 (12%), Positives = 43/153 (28%), Gaps = 33/153 (21%)

Query: 74  TVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHV 133
             +E    G  P  + +     L   +++N+ I +I+ S                  G +
Sbjct: 132 REYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITES------------------GDI 173

Query: 134 DGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPS 193
                    + P G+   +   ++  + +   I +I+ +G  T                 
Sbjct: 174 TEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEITEFKI--PTPNARPHA-- 229

Query: 194 EDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI 226
                      +  G+   L   + G   I  +
Sbjct: 230 -----------ITAGAGIDLWFTEWGANKIGRL 251

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 66.2 bits (162), Expect = 3e-12
 Identities = 24/154 (15%), Positives = 47/154 (30%), Gaps = 35/154 (22%)

Query: 74  TVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHV 133
           T +       +   + +S  GE+   ++  + I +I+                    G +
Sbjct: 48  TEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK------------------GII 89

Query: 134 DGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG-VTTIAGGKWSRGVGHVDGP 192
                    + P G+     G+I+  +     I +I+D G +                  
Sbjct: 90  KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELP------------ 137

Query: 193 SEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI 226
               K S    +  +GS  +L   +  N AI  I
Sbjct: 138 ---NKGSYPSFIT-LGSDNALWFTENQNNAIGRI 167

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 11/103 (10%), Positives = 28/103 (27%), Gaps = 18/103 (17%)

Query: 74  TVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHV 133
           T F+       P  +       L  ++   + I +I+TS                  G +
Sbjct: 174 TEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTS------------------GEI 215

Query: 134 DGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTT 176
                      P  +      +++  +     I +++   +  
Sbjct: 216 TEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSNNIIE 258

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 13/103 (12%), Positives = 32/103 (31%), Gaps = 20/103 (19%)

Query: 74  TVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHV 133
           T F+       P ++      +L   +   + I +++++                    +
Sbjct: 216 TEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN------------------NII 257

Query: 134 DGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTT 176
           +  P   +   P G+  D    I+ A   +  I K++      
Sbjct: 258 EEYPIQIKSAEPHGICFDG-ETIWFAMECD-KIGKLTLIKDNM 298

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 66.8 bits (163), Expect = 3e-12
 Identities = 20/144 (13%), Positives = 40/144 (27%), Gaps = 14/144 (9%)

Query: 77  EGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGR 136
                G +   VA+     L++    +      S       + + +    E     +D  
Sbjct: 19  VYLLPG-QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPN 77

Query: 137 PRG-------ARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG-----VTTIAGGKWSR 184
                          P GL++D  GN ++ D     + K+         +      +   
Sbjct: 78  NAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGS 137

Query: 185 GVGHVDGPSEDAKFSNDFDVVYVG 208
              H   P++ A        V+V 
Sbjct: 138 DQNHFCQPTDVA-VEPSTGAVFVS 160

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 64.5 bits (157), Expect = 1e-11
 Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 19/144 (13%)

Query: 85  PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPE-GYYGHVDGRPRGARMN 143
           P  +++   G   V D     ++K+     P+S+   +         G            
Sbjct: 93  PHGLSIDTDGNYWVTDVALHQVFKLD----PHSKEGPLLILGRSMQPGSDQNH-----FC 143

Query: 144 HPKGLAVD-DRGNIYIADTM-NMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSN 200
            P  +AV+   G ++++D   N  I + S +G   T  G + S             +FS 
Sbjct: 144 QPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESS------GSSPRPGQFSV 197

Query: 201 DFDVVYVGSSCSLLVIDRGNQAIR 224
              +  V     L V DR N  I+
Sbjct: 198 PHSLALVPHLDQLCVADRENGRIQ 221

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 57.9 bits (140), Expect = 2e-09
 Identities = 18/113 (15%), Positives = 35/113 (30%), Gaps = 22/113 (19%)

Query: 67  EGGYTVETVFEGSKFGMEPFS------VAVSPSGELLVLDSENSNIYKISTSLSPYSRPK 120
           +    V  +   S FG   F+         + +G+    D E    + ++ S        
Sbjct: 226 DTKEFVREIKHAS-FGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFS-------- 276

Query: 121 LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG 173
             +G     +      P     + P  +   + G +YI D     + K + T 
Sbjct: 277 --SGEIIDVFK-----PVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 54.1 bits (130), Expect = 4e-08
 Identities = 22/141 (15%), Positives = 41/141 (29%), Gaps = 23/141 (16%)

Query: 85  PFSVAVSPS-GELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMN 143
           P S+A+ P   +L V D EN  I    T    + R    A      +           ++
Sbjct: 198 PHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFA----------IS 247

Query: 144 HPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFD 203
           +  G      G  Y  D   +    ++ +    I    +     H D P +         
Sbjct: 248 YIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEII--DVFKPVRKHFDMPHD--------- 296

Query: 204 VVYVGSSCSLLVIDRGNQAIR 224
            +      ++ + D     + 
Sbjct: 297 -IVASEDGTVYIGDAHTNTVW 316

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 11/108 (10%), Positives = 23/108 (21%), Gaps = 12/108 (11%)

Query: 128 GYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGV- 186
                +D            G+A+D + N+ I    +      S                 
Sbjct: 9   HVEEELDWPGVYLLPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEE 68

Query: 187 ----------GHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIR 224
                       +   S    F     +  + +  +  V D     + 
Sbjct: 69  DTILVIDPNNAEILQSSGKNLFYLPHGLS-IDTDGNYWVTDVALHQVF 115

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 61.4 bits (150), Expect = 1e-10
 Identities = 25/153 (16%), Positives = 46/153 (30%), Gaps = 36/153 (23%)

Query: 71  TVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYY 130
            V   F  SK    P  V V+   E+ + D+    +   +                EG Y
Sbjct: 152 NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFN---------------YEGQY 196

Query: 131 GHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMA-IRKISDTG--VTTIAGGKWSRGVG 187
               G       N+P G+ ++  G I IAD  N   +   +  G  ++ +          
Sbjct: 197 LRQIGGEG--ITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESK------V 248

Query: 188 HVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN 220
                 +          V +    S+++  +  
Sbjct: 249 KHAQCFD----------VALMDDGSVVLASKDY 271

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 59.9 bits (146), Expect = 4e-10
 Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 19/104 (18%)

Query: 78  GSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRP 137
           G+     P  V V   G ++V++ +   +                     G   H  G  
Sbjct: 116 GATILQHPRGVTVDNKGRIIVVECKVMRVIIFD---------------QNGNVLHKFGCS 160

Query: 138 RGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG--VTTIAG 179
               +  P G+ V+D+  I+I+D     ++  +  G  +  I G
Sbjct: 161 --KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGG 202

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 57.6 bits (140), Expect = 2e-09
 Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 38/146 (26%)

Query: 83  MEPFSVAVSPSGELLVL--DSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGA 140
           + P  VAV  +   +++   S    I   +     Y +     G+               
Sbjct: 77  LYPNRVAVVRNSGDIIVTERSPTHQIQIYN----QYGQFVRKFGATI------------- 119

Query: 141 RMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKF 198
            + HP+G+ VD++G I + +   M +      G  +    G        H++ P+     
Sbjct: 120 -LQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKF-GCS-----KHLEFPN----- 167

Query: 199 SNDFDVVYVGSSCSLLVIDRGNQAIR 224
                 V V     + + D     ++
Sbjct: 168 -----GVVVNDKQEIFISDNRAHCVK 188

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 50.6 bits (122), Expect = 3e-07
 Identities = 16/68 (23%), Positives = 29/68 (42%)

Query: 141 RMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSN 200
           +   P G+AV+ + +I +ADT N  I+     G      G+  +    +  P+  A   N
Sbjct: 28  QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRN 87

Query: 201 DFDVVYVG 208
             D++   
Sbjct: 88  SGDIIVTE 95

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 49.9 bits (120), Expect = 6e-07
 Identities = 27/156 (17%), Positives = 48/156 (30%), Gaps = 40/156 (25%)

Query: 77  EGSKFGM--EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVD 134
            G   G   EP  VAV+   +++V D+ N  I                    EG +    
Sbjct: 22  FGVMEGQFTEPSGVAVNAQNDIIVADTNNHRIQIF---------------DKEGRFKFQF 66

Query: 135 GR--PRGARMNHPKGLAVDDRGN--IYIADTMNMAIRKISDTG--VTTIAGGKWSRGVGH 188
           G    R +++ +P  +AV       I    +    I+  +  G  V          G   
Sbjct: 67  GECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKF-------GATI 119

Query: 189 VDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIR 224
           +  P            V V +   ++V++     + 
Sbjct: 120 LQHPRG----------VTVDNKGRIIVVECKVMRVI 145

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.6 bits (146), Expect = 7e-10
 Identities = 55/484 (11%), Positives = 109/484 (22%), Gaps = 167/484 (34%)

Query: 35  IVSNVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGS-KFGMEPFSV-AVSP 92
           +  + VS  ++  W+L    +  V      KF     VE V   + KF M P       P
Sbjct: 56  MSKDAVSGTLRLFWTLLSKQEEMVQ-----KF-----VEEVLRINYKFLMSPIKTEQRQP 105

Query: 93  SGELLVLDSENSNIYKISTSLSPY--SRPKLVAG--------SPEGYYGHVDGRPRGARM 142
           S    +   +   +Y  +   + Y  SR +             P      +DG      +
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL-IDG------V 158

Query: 143 NHPKG-----LAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGK--WSRGVGHVDGPSED 195
               G     +A+D                      V      K  W   + + + P   
Sbjct: 159 ---LGSGKTWVALD-------------VCL---SYKVQCKMDFKIFWLN-LKNCNSPETV 198

Query: 196 AKFSNDFDVVYVGSSCSL--------LVIDRGNQAIREIQLH----------DDDCSDNY 237
            +           +  S         L I      +R +              +  +   
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 238 DDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPRTQMKRGPPAVAPYQRPPKSAR 297
            + F+L   +L+                    +++             V  +     +  
Sbjct: 259 WNAFNLSCKILL--------------------TTRF----------KQVTDFLSAATTTH 288

Query: 298 PPLVPTEDDFEKPE-EGFFG---------------SIGRLVLNTGSTVGEIFGGLFSMFR 341
             L          E +                   +     L   S + E         R
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL---SIIAE-------SIR 338

Query: 342 RKPVHYQRQHQYQQRNVPPSTWHMQESYVIPDEDEPPPLETRTPTPKKSYHPYTI--KDL 399
                +     ++  N    T  ++ S      +   P E R     K +   ++     
Sbjct: 339 DGLATWDN---WKHVNCDKLTTIIESSL-----NVLEPAEYR-----KMFDRLSVFPPSA 385

Query: 400 -----------------DKRQYTKQ--SKSYYNGWEVDYH---HGQQQQMPIHHQQQQHH 437
                            D      +    S       +          ++ +  + +   
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445

Query: 438 HRQF 441
           HR  
Sbjct: 446 HRSI 449

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306

 Score = 43.8 bits (103), Expect = 8e-05
 Identities = 27/156 (17%), Positives = 42/156 (26%), Gaps = 33/156 (21%)

Query: 71  TVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYY 130
             + +           ++A +P G + V + E   I  I    +P    ++ A       
Sbjct: 21  PAKIITSFPV-NTFLENLASAPDGTIFVTNHEVGEIVSI----TPDGNQQIHATVEGK-- 73

Query: 131 GHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVD 190
                           GLA    G++        +I  +S            S G     
Sbjct: 74  --------------VSGLAFTSNGDLVATGWNADSIPVVSLVK---------SDGTVETL 110

Query: 191 GPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI 226
               DA F N    +   S    L  D    AI  I
Sbjct: 111 LTLPDAIFLNG---ITPLSDTQYLTADSYRGAIWLI 143

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} Length = 255

 Score = 40.4 bits (94), Expect = 7e-04
 Identities = 25/149 (16%), Positives = 46/149 (30%), Gaps = 13/149 (8%)

Query: 19  FSSVSASTPPAKIVAGIVSNVVSALVKWLWSLK-DSPKTAVSSSSMIKFEGGYTVETVFE 77
              +      +    G      S      W  K  +P      + ++     +  +    
Sbjct: 107 LKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKAL 166

Query: 78  GSKFGMEPFS-VAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDG 135
             +F ++  S    +     LLVL  E+  + +++          L  GS          
Sbjct: 167 QRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGS---------- 216

Query: 136 RPRGARMNHPKGLAVDDRGNIYIADTMNM 164
           R     +   +G+A+D  GNIYI    N 
Sbjct: 217 RGLSHNIKQAEGVAMDASGNIYIVSEPNR 245

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	507
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.89
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.85
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.82
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.81
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.67
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.67
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.65
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.64
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.62
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.61
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.58
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.58
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.56
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.56
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.55
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.54
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.52
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.51
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.51
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.48
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.48
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.47
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.46
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.46
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.45
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.44
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.44
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.43
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.42
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.41
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.39
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.37
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.34
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.33
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.29
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.26
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.26
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.22
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.21
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.21
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.16
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.16
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.16
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.14
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.09
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.08
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.06
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.02
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.0
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.0
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.97
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.9
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.9
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.87
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.86
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.85
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.84
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.82
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.81
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.76
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.75
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.75
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.71
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.64
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.64
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.56
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.56
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.52
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	98.52
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.51
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.46
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.45
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	98.43
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.42
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	98.36
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.35
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.34
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.33
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.32
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.26
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.21
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.2
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.19
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.17
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.17
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.16
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.13
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	98.13
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.12
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.08
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.01
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	97.97
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.95
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	97.93
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	97.91
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.9
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.87
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	97.84
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	97.78
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.75
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	97.69
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	97.67
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	97.67
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.66
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.65
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	97.58
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.57
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.56
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	97.5
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.43
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.4
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	97.33
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.32
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.31
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	97.29
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	97.14
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.09
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	96.91
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	96.88
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	96.86
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	96.86
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	96.83
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	96.82
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	96.81
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.48
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.46
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	96.39
2ece_A	462	462AA long hypothetical selenium-binding protein;	96.35
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	96.31
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.18
2ece_A	462	462AA long hypothetical selenium-binding protein;	96.12
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	96.0
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	95.93
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.84
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	95.8
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	95.62
3ow8_A	321	WD repeat-containing protein 61; structural genomi	95.5
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.3
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	95.24
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	95.19
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	95.03
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	94.98
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	94.94
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	94.91
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	94.69
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	94.37
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	94.3
4a2l_A	795	BT_4663, two-component system sensor histidine kin	94.27
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	94.14
3v9f_A	781	Two-component system sensor histidine kinase/RESP	94.11
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	94.09
3v9f_A	781	Two-component system sensor histidine kinase/RESP	93.93
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	93.83
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	93.72
3ow8_A	321	WD repeat-containing protein 61; structural genomi	93.66
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	93.57
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	93.41
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	93.37
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	93.31
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	93.24
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	93.24
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	93.16
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	93.13
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	93.08
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	93.05
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	93.03
4a2l_A	795	BT_4663, two-component system sensor histidine kin	93.01
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	92.95
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	92.87
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	92.82
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	92.66
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	92.61
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	92.56
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	92.48
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	92.07
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	92.01
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	92.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	91.91
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	91.91
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	91.71
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	91.65
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	91.52
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	91.4
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	91.32
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	91.26
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	91.22
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	91.22
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	91.1
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	91.08
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	90.92
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	90.58
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	90.51
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	90.46
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	90.35
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	90.28
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	90.09
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	90.06
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	89.99
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	89.93
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	89.85
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	89.76
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	89.51
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	89.5
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	89.47
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	89.24
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	89.1
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	88.93
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	88.92
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	88.89
3ott_A	758	Two-component system sensor histidine kinase; beta	88.56
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	88.36
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	88.35
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	88.27
2pm7_B	297	Protein transport protein SEC13, protein transport	87.91
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	87.76
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	87.41
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	87.39
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	87.32
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	87.17
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	86.62
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	86.49
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	86.47
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	86.46
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	86.44
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	86.35
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	86.25
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	86.1
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	85.88
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	85.64
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	85.46
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	85.32
3jrp_A	379	Fusion protein of protein transport protein SEC13	85.2
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	84.94
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	84.58
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	84.3
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	84.3
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	83.98
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	83.7
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	82.66
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	82.28
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	81.27
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	81.21
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	81.19
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	80.73
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	80.68
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	80.3
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	80.17
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	80.06

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.89  E-value=1.6e-22  Score=217.76  Aligned_cols=151  Identities=25%  Similarity=0.339  Sum_probs=124.5

Q ss_pred             CCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCc---cEEEecCCCCccccCCCCcccccCCCcc-eEEEc------
Q 010579           83 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSR---PKLVAGSPEGYYGHVDGRPRGARMNHPK-GLAVD------  151 (507)
Q Consensus        83 ~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~---i~~vaG~~~G~~G~~dG~~~~a~fn~P~-GIaVd------  151 (507)
                      ..|.+|+++++|+ |||+|+.+|+|++++.++.. +.   ..+++|.. |..|..||.+..++|+.|. ++++|      
T Consensus       310 ~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~-~~~~~~~~~aG~~-g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~  387 (496)
T 3kya_A          310 SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIK-KEFITPYNFVGGY-KQSGYRDDVGTEARMNNPCQGVFVKNPDYTG  387 (496)
T ss_dssp             SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTT-TEECCCEEEEEBT-TBCCCBCCBGGGCBCSSEEEEEEEECTTCCS
T ss_pred             CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCc-ceecccEEecCCC-CCCcccCCcccccccCCCeEEEEEccccccc
Confidence            4699999999998 89999999999998876422 22   36788863 4566668989999999999 89998      


Q ss_pred             -CCCCEEEEeCCCCeEEEEcCCC-cEEEecCcc------cCCCCCCCC-CccCccCCCCceEEEEcCCCeEEEEeCCCCe
Q 010579          152 -DRGNIYIADTMNMAIRKISDTG-VTTIAGGKW------SRGVGHVDG-PSEDAKFSNDFDVVYVGSSCSLLVIDRGNQA  222 (507)
Q Consensus       152 -~dGnIYVADs~N~rIrk~d~~G-VstIaGG~~------g~~~G~~dg-~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~r  222 (507)
                       .+|+|||||+.|||||+|+.+| ++|++|...      +..+|+.|| ++..++|+.|.+|++...+|+|||+|++|+|
T Consensus       388 ~~~g~lyVaD~~N~rIr~i~~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~r  467 (496)
T 3kya_A          388 EEEYDFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHT  467 (496)
T ss_dssp             SCCEEEEEEEGGGTEEEEECTTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTE
T ss_pred             cCCCeEEEEECCCCEEEEEeCCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCE
Confidence             6899999999999999999999 899998532      122366677 8899999999999964335999999999999


Q ss_pred             EEEEECCCCceee
Q 010579          223 IREIQLHDDDCSD  235 (507)
Q Consensus       223 Ir~I~l~~~~~~~  235 (507)
                      ||+|+++++.|..
T Consensus       468 Irki~~~~~~~~~  480 (496)
T 3kya_A          468 IRTISMEQEENVA  480 (496)
T ss_dssp             EEEEEECCCC---
T ss_pred             EEEEECCCCcccc
Confidence            9999999988864

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.85  E-value=1.9e-20  Score=197.78  Aligned_cols=179  Identities=23%  Similarity=0.323  Sum_probs=135.9

Q ss_pred             ceEeEEEecCCcEEEEEeCCCCeEEecCcceEeeCCeeeEEeecCCCCCCCeeEEEEcCCCc-EEEEeCCCCeEEEEeCC
Q 010579           34 GIVSNVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDSENSNIYKISTS  112 (507)
Q Consensus        34 G~l~~va~ag~~~I~~~d~~t~~i~aG~~~~~~~~G~~~~~~~~G~~~~~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~  112 (507)
                      |.++ +++..+++|+++++.++++..    ...         ..+.  ...+.+|+++++|+ |||+|..+++|++++.+
T Consensus       240 G~ly-v~d~~~~~V~~~d~~~g~~~~----~~~---------~~~~--~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          240 GKIY-YTRYHHAMISSYDPATGTLTE----EEV---------MMDT--KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             CCEE-ECBTTCSEEEEECTTTCCEEE----EEE---------ECSC--CSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             CeEE-EEECCCCEEEEEECCCCeEEE----EEe---------ccCC--CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            4454 666667777777776554310    001         1111  12467899999998 99999999999999876


Q ss_pred             C--CCCCccEEEecCCCCccccCCCCcccccCCCcceEEE---------cCCCCEEEEeCCCCeEEEEcCCC-cEEEecC
Q 010579          113 L--SPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAV---------DDRGNIYIADTMNMAIRKISDTG-VTTIAGG  180 (507)
Q Consensus       113 g--~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaV---------d~dGnIYVADs~N~rIrk~d~~G-VstIaGG  180 (507)
                      +  .....+.+++|.. +..|..+|.+..++|+.|.||++         |++|+|||||+.|+||++|+.+| +++++|.
T Consensus       304 ~~~~~~~~~~~~ag~~-g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~G~v~t~~G~  382 (433)
T 4hw6_A          304 RETGKLAVPYIVCGQH-SSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEGRVTTYAGR  382 (433)
T ss_dssp             TTTCCBCCCEEEEECT-TCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTTSEEEEEECC
T ss_pred             CCCcccCcEEEEEecC-CCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCCCCEEEEEeC
Confidence            3  2223456788763 44566677788899999999999         89999999999999999999999 8889875


Q ss_pred             cccCCCCCCCC-CccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECC
Q 010579          181 KWSRGVGHVDG-PSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH  229 (507)
Q Consensus       181 ~~g~~~G~~dg-~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~  229 (507)
                      ......|+.|| .+..++|+.|.+|++.+.+|+|||+|.+|+|||+|+++
T Consensus       383 g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          383 GNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             CTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            32112455677 77889999999999644899999999999999999975

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.82  E-value=2.1e-19  Score=189.37  Aligned_cols=145  Identities=30%  Similarity=0.450  Sum_probs=117.7

Q ss_pred             CCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCC--CCccEEEecCCCCccccCCCCcccccCCCcc-eEEE--------
Q 010579           83 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSP--YSRPKLVAGSPEGYYGHVDGRPRGARMNHPK-GLAV--------  150 (507)
Q Consensus        83 ~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~--~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~-GIaV--------  150 (507)
                      ..|.+|+++++|+ |||+|..+++|++++.++..  ...+.+++|.. +..|..+|....++|+.|. |+++        
T Consensus       270 ~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~-g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~  348 (430)
T 3tc9_A          270 GWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQ-GAKDWVDGVGKKARMHAPRQGTFVKNPAYKGS  348 (430)
T ss_dssp             SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECT-TCBCCBCEEGGGCBBSSEEEEEEEECGGGTTS
T ss_pred             CcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccC-CCCCCCCCCCcceEeCCCcceEEEcccccccc
Confidence            3699999999998 99999999999999876421  12356778763 4455557777788999999 8999        


Q ss_pred             cCCCCEEEEeCCCCeEEEEcCCC-cEEEecCc-ccCCCCCCCC-CccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEE
Q 010579          151 DDRGNIYIADTMNMAIRKISDTG-VTTIAGGK-WSRGVGHVDG-PSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQ  227 (507)
Q Consensus       151 d~dGnIYVADs~N~rIrk~d~~G-VstIaGG~-~g~~~G~~dg-~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~  227 (507)
                      |++|+|||||+.|+||++|+.+| +++++|.. .+. .|+.|| ++..++|+.|.+|++.+.++.|||+|.+|+|||+|+
T Consensus       349 D~~g~lyvaD~~n~~I~~i~~~G~v~~~~g~g~~~~-~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~  427 (430)
T 3tc9_A          349 SDEYDFYFCDRENHCIRILTPQGRVTTFAGRGSNGT-SGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIG  427 (430)
T ss_dssp             SCCEEEEEEEGGGTEEEEECTTSEEEEEEECCTTSS-SSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred             CCCCeEEEEECCCcEEEEECCCCcEEEEEeCCCCCC-CcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEc
Confidence            46799999999999999999999 78888742 122 345566 778899999999996444799999999999999999


Q ss_pred             CC
Q 010579          228 LH  229 (507)
Q Consensus       228 l~  229 (507)
                      ++
T Consensus       428 ~e  429 (430)
T 3tc9_A          428 YE  429 (430)
T ss_dssp             EC
T ss_pred             cC
Confidence            75

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.81  E-value=1e-18  Score=182.52  Aligned_cols=139  Identities=25%  Similarity=0.400  Sum_probs=118.4

Q ss_pred             CCee-EEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEe
Q 010579           83 MEPF-SVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIAD  160 (507)
Q Consensus        83 ~~P~-gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVAD  160 (507)
                      ..|. +|++++ +|+|||+|..+++|++++.+    +.+.+++|.. +..|..+|....++|+.|.||++|++|+|||||
T Consensus       266 ~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~----g~~~~~~g~~-~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad  340 (409)
T 3hrp_A          266 TNPGPYLIYYFVDSNFYMSDQNLSSVYKITPD----GECEWFCGSA-TQKTVQDGLREEALFAQPNGMTVDEDGNFYIVD  340 (409)
T ss_dssp             CSSCCEEEEETTTTEEEEEETTTTEEEEECTT----CCEEEEEECT-TCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEE
T ss_pred             CCccccEEEeCCCCEEEEEeCCCCEEEEEecC----CCEEEEEeCC-CCCCcCCCcccccEeCCCeEEEEeCCCCEEEEe
Confidence            3577 999999 68999999999999999987    5677888864 344555777778899999999999999999999


Q ss_pred             C-CCCeEEEEc-CCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECC
Q 010579          161 T-MNMAIRKIS-DTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH  229 (507)
Q Consensus       161 s-~N~rIrk~d-~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~  229 (507)
                      + .|++|++++ .+| +++++|....  .++.+|.+..+.|+.|.+|+ ++.+|.|||+|.+|++||+|+++
T Consensus       341 ~~~~~~I~~~~~~~G~v~~~~g~~~~--~g~~~g~~~~~~~~~P~gia-vd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          341 GFKGYCLRKLDILDGYVSTVAGQVDV--ASQIDGTPLEATFNYPYDIC-YDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             TTTTCEEEEEETTTTEEEEEEECTTC--BSCCCBSTTTCCBSSEEEEE-ECSSSEEEEEESTTCEEEEEEEC
T ss_pred             CCCCCEEEEEECCCCEEEEEeCCCCC--CCcCCCChhceEeCCceEEE-EcCCCCEEEEECCCCeEEEEEeC
Confidence            9 999999999 788 7888874221  45667778889999999999 57779999999999999999863

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.67  E-value=2.1e-14  Score=143.49  Aligned_cols=140  Identities=20%  Similarity=0.285  Sum_probs=102.5

Q ss_pred             CCCCCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC-CCCEEE
Q 010579           80 KFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYI  158 (507)
Q Consensus        80 ~~~~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~-dGnIYV  158 (507)
                      ..+..|.+|+++++|+|||+|..+++|++++.++.. ..+..+...  +..|.     ....|+.|.+|++|+ +|+|||
T Consensus        88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~-~~~~~~~~~--~~~g~-----~~~~~~~P~~ia~~~~~g~lyv  159 (329)
T 3fvz_A           88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKE-GPLLILGRS--MQPGS-----DQNHFCQPTDVAVEPSTGAVFV  159 (329)
T ss_dssp             TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSS-CCSEEESBT--TBCCC-----STTCCSSEEEEEECTTTCCEEE
T ss_pred             CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCe-EEEEEeccc--CCCCC-----CccccCCCcEEEEeCCCCeEEE
Confidence            445689999999999999999999999999987421 123333221  22221     124689999999999 899999


Q ss_pred             EeC-CCCeEEEEcCCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCce
Q 010579          159 ADT-MNMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  233 (507)
Q Consensus       159 ADs-~N~rIrk~d~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~  233 (507)
                      +|+ .+++|++++.+| +....+ ..+.     ........|..|.+|++.++.+.|||+|.++++|++++++++.+
T Consensus       160 ~d~~~~~~I~~~~~~g~~~~~~~-~~g~-----~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~  230 (329)
T 3fvz_A          160 SDGYCNSRIVQFSPSGKFVTQWG-EESS-----GSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF  230 (329)
T ss_dssp             EECSSCCEEEEECTTSCEEEEEC-EECC-----SSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE
T ss_pred             EeCCCCCeEEEEcCCCCEEEEec-cCCC-----CCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcE
Confidence            997 799999999888 333322 1111     11223457889999996444499999999999999999984433

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.67  E-value=1.1e-15  Score=161.40  Aligned_cols=164  Identities=15%  Similarity=0.130  Sum_probs=121.7

Q ss_pred             CCCeeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEE
Q 010579           82 GMEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYI  158 (507)
Q Consensus        82 ~~~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYV  158 (507)
                      +..|.+|++++ +|+|||+|..+++|++++++   .+.+ ..+...+              ....+.+|++|++|+ |||
T Consensus       227 ~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~---~g~~~~~~~~~~--------------~~~~~~~ia~dpdG~~LYv  289 (433)
T 4hw6_A          227 ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA---TGTLTEEEVMMD--------------TKGSNFHIVWHPTGDWAYI  289 (433)
T ss_dssp             CSSBCCCEECTTTCCEEECBTTCSEEEEECTT---TCCEEEEEEECS--------------CCSSCEEEEECTTSSEEEE
T ss_pred             cCCCCEEEEeCCCCeEEEEECCCCEEEEEECC---CCeEEEEEeccC--------------CCCCcccEEEeCCCCEEEE
Confidence            46899999999 89999999999999999987   2444 3332221              012456899999998 999


Q ss_pred             EeCCCCeEEEEcCC---C----cEEEecCcccCCCCCCCCCccCccCCCCceEEEE--------cCCCeEEEEeCCCCeE
Q 010579          159 ADTMNMAIRKISDT---G----VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYV--------GSSCSLLVIDRGNQAI  223 (507)
Q Consensus       159 ADs~N~rIrk~d~~---G----VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~v--------d~~G~LyVaD~gn~rI  223 (507)
                      +|..+++|++++.+   +    +.+++|.. +. .|+.||+...++|+.|.+|+++        +.+|+|||+|++|++|
T Consensus       290 ad~~~~~I~~~~~d~~~~~~~~~~~~ag~~-g~-~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I  367 (433)
T 4hw6_A          290 IYNGKHCIYRVDYNRETGKLAVPYIVCGQH-SS-PGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTV  367 (433)
T ss_dssp             EETTTTEEEEEEBCTTTCCBCCCEEEEECT-TC-CCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEE
T ss_pred             EeCCCCEEEEEeCCCCCcccCcEEEEEecC-CC-CccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEE
Confidence            99999999998843   2    35777631 11 3556788888999999999953        8899999999999999


Q ss_pred             EEEECCCCceeeCCC------------------CCccceEEEE--ecceeEEehhHHHhcc
Q 010579          224 REIQLHDDDCSDNYD------------------DTFHLGIFVL--VAAAFFGYMLALLQRR  264 (507)
Q Consensus       224 r~I~l~~~~~~~~~~------------------~G~p~gIa~~--~~a~~~gy~~~~lq~~  264 (507)
                      ++|++++...+....                  ...|.+||+.  .+..|+++...-..++
T Consensus       368 ~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~  428 (433)
T 4hw6_A          368 RVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRK  428 (433)
T ss_dssp             EEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEE
T ss_pred             EEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEE
Confidence            999987633322110                  1248899998  5667777765443333

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.65  E-value=1.8e-15  Score=159.30  Aligned_cols=165  Identities=16%  Similarity=0.147  Sum_probs=121.3

Q ss_pred             CCCeeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEE
Q 010579           82 GMEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIA  159 (507)
Q Consensus        82 ~~~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVA  159 (507)
                      +..|.+|++++ +|+|||+|..+++|+++++++   +....+...+              ....|++|++|++|+ |||+
T Consensus       225 ~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~---~~~~~~~~~~--------------~~~~P~gia~~pdG~~lyv~  287 (430)
T 3tc9_A          225 GQNCNGAETHPINGELYFNSWNAGQVFRYDFTT---QETTPLFTIQ--------------DSGWEFHIQFHPSGNYAYIV  287 (430)
T ss_dssp             CSSCCCEEECTTTCCEEEEETTTTEEEEEETTT---TEEEEEEECS--------------SSSCCEEEEECTTSSEEEEE
T ss_pred             CCCceEEEEeCCCCEEEEEECCCCEEEEEECCC---CcEEEEEEcC--------------CCCcceeEEEcCCCCEEEEE
Confidence            46899999999 899999999999999999973   3332332211              124799999999999 9999


Q ss_pred             eCCCCeEEEEcCCC-------cEEEecCcccCCCCCCCCCccCccCCCCc-eEEEE-------cCCCeEEEEeCCCCeEE
Q 010579          160 DTMNMAIRKISDTG-------VTTIAGGKWSRGVGHVDGPSEDAKFSNDF-DVVYV-------GSSCSLLVIDRGNQAIR  224 (507)
Q Consensus       160 Ds~N~rIrk~d~~G-------VstIaGG~~g~~~G~~dg~~~~a~f~~P~-gIa~v-------d~~G~LyVaD~gn~rIr  224 (507)
                      |..+++|++++.++       +.+++|.. +. .|+.++....+.|+.|. ++++.       |.+|+|||+|++|++|+
T Consensus       288 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~-g~-~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~  365 (430)
T 3tc9_A          288 VVNQHYILRSDYDWKTKRLTTPYIVCGQQ-GA-KDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIR  365 (430)
T ss_dssp             ETTTTEEEEEEEETTTTEECCCEEEEECT-TC-BCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEE
T ss_pred             ECCCCEEEEEeCCcccccccceEEEeccC-CC-CCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEE
Confidence            99999999998553       45677631 11 34557777788999999 67643       46799999999999999


Q ss_pred             EEECCCCceeeCCC---------CC---------ccceEEEEe--cceeEEehhHHHhccc
Q 010579          225 EIQLHDDDCSDNYD---------DT---------FHLGIFVLV--AAAFFGYMLALLQRRV  265 (507)
Q Consensus       225 ~I~l~~~~~~~~~~---------~G---------~p~gIa~~~--~a~~~gy~~~~lq~~~  265 (507)
                      +|++++........         .|         .|.+|++..  +..|+++...-..+++
T Consensus       366 ~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i  426 (430)
T 3tc9_A          366 ILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKI  426 (430)
T ss_dssp             EECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred             EECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence            99977643322111         12         589999985  5677777655444443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.64  E-value=1.9e-14  Score=150.17  Aligned_cols=161  Identities=19%  Similarity=0.191  Sum_probs=119.2

Q ss_pred             CCCCeeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcc-eEEEcC-CCCEE
Q 010579           81 FGMEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPK-GLAVDD-RGNIY  157 (507)
Q Consensus        81 ~~~~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~-GIaVd~-dGnIY  157 (507)
                      .+..|.++++++ +|+|||+|. +++|++++.++   +...++++..  ..+.        .-..|. +|++++ +|+||
T Consensus       217 ~~~~p~~iav~p~~g~lyv~d~-~~~I~~~d~~~---~~~~~~~~~~--~~g~--------~~~~P~~~ia~~p~~g~ly  282 (409)
T 3hrp_A          217 FSGKIGAVALDETEEWLYFVDS-NKNFGRFNVKT---QEVTLIKQLE--LSGS--------LGTNPGPYLIYYFVDSNFY  282 (409)
T ss_dssp             SCSCCCBCEECTTSSEEEEECT-TCEEEEEETTT---CCEEEEEECC--CCSC--------CCCSSCCEEEEETTTTEEE
T ss_pred             hcCCcEEEEEeCCCCeEEEEEC-CCcEEEEECCC---CCEEEEeccc--ccCC--------CCCCccccEEEeCCCCEEE
Confidence            346899999999 899999886 78999999873   4455554432  1111        012377 999999 68999


Q ss_pred             EEeCCCCeEEEEcCCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeC-CCCeEEEEECCCCceee
Q 010579          158 IADTMNMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR-GNQAIREIQLHDDDCSD  235 (507)
Q Consensus       158 VADs~N~rIrk~d~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~-gn~rIr~I~l~~~~~~~  235 (507)
                      |+|..+++|++++.+| +.+++|....  .|+.+++...++|+.|.+|+ ++++|+|||+|. +|++|++|++.......
T Consensus       283 v~d~~~~~I~~~~~~g~~~~~~g~~~~--~g~~dg~~~~~~~~~P~gia-~d~dG~lyvad~~~~~~I~~~~~~~G~v~~  359 (409)
T 3hrp_A          283 MSDQNLSSVYKITPDGECEWFCGSATQ--KTVQDGLREEALFAQPNGMT-VDEDGNFYIVDGFKGYCLRKLDILDGYVST  359 (409)
T ss_dssp             EEETTTTEEEEECTTCCEEEEEECTTC--CSCBCEEGGGCBCSSEEEEE-ECTTCCEEEEETTTTCEEEEEETTTTEEEE
T ss_pred             EEeCCCCEEEEEecCCCEEEEEeCCCC--CCcCCCcccccEeCCCeEEE-EeCCCCEEEEeCCCCCEEEEEECCCCEEEE
Confidence            9999999999999888 7777764311  35667777888999999998 588899999999 99999999955444332


Q ss_pred             CCC----------------CCccceEEEEe-cceeEEehh
Q 010579          236 NYD----------------DTFHLGIFVLV-AAAFFGYML  258 (507)
Q Consensus       236 ~~~----------------~G~p~gIa~~~-~a~~~gy~~  258 (507)
                      ..+                ...|.+|++.. +..|+++..
T Consensus       360 ~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~  399 (409)
T 3hrp_A          360 VAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAW  399 (409)
T ss_dssp             EEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEEST
T ss_pred             EeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECC
Confidence            111                13588899887 445665544

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.62  E-value=1.8e-15  Score=162.94  Aligned_cols=166  Identities=16%  Similarity=0.149  Sum_probs=119.3

Q ss_pred             CCeeEEEEcC-CCcEEEEeCCCCeEEEEeCC-------CCCCCc---------cEEEecCCCCccccCCCCcccccCCCc
Q 010579           83 MEPFSVAVSP-SGELLVLDSENSNIYKISTS-------LSPYSR---------PKLVAGSPEGYYGHVDGRPRGARMNHP  145 (507)
Q Consensus        83 ~~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~-------g~~~g~---------i~~vaG~~~G~~G~~dG~~~~a~fn~P  145 (507)
                      ..|.+|++++ +|.|||+|..+++|++++++       +.....         ...+.-.              ..-..|
T Consensus       247 ~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~--------------~~~~~p  312 (496)
T 3kya_A          247 KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI--------------ADPSWE  312 (496)
T ss_dssp             SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC--------------SSSSCC
T ss_pred             CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEec--------------CCCCCc
Confidence            5799999999 78999999999999999975       221100         0011100              012468


Q ss_pred             ceEEEcCCCC-EEEEeCCCCeEEEEcCCC----c---EEEecCcccCCCCCCCCCccCccCCCCc-eEEEEc-------C
Q 010579          146 KGLAVDDRGN-IYIADTMNMAIRKISDTG----V---TTIAGGKWSRGVGHVDGPSEDAKFSNDF-DVVYVG-------S  209 (507)
Q Consensus       146 ~GIaVd~dGn-IYVADs~N~rIrk~d~~G----V---stIaGG~~g~~~G~~dg~~~~a~f~~P~-gIa~vd-------~  209 (507)
                      .+||++++|+ |||||+.+|+|++++.++    +   ++++|.. +. .|+.||++..++|+.|. +++ ++       .
T Consensus       313 ~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~-g~-~G~~DG~~~~a~f~~P~~gv~-vd~~~~~~~~  389 (496)
T 3kya_A          313 FQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGY-KQ-SGYRDDVGTEARMNNPCQGVF-VKNPDYTGEE  389 (496)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBT-TB-CCCBCCBGGGCBCSSEEEEEE-EECTTCCSSC
T ss_pred             eEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCC-CC-CcccCCcccccccCCCeEEEE-EccccccccC
Confidence            9999999999 899999999999988554    1   5777732 21 45568999999999999 555 55       6


Q ss_pred             CCeEEEEeCCCCeEEEEECCCCceeeCC---------------CCC---------ccceEEEEe--cceeEEehhHHHhc
Q 010579          210 SCSLLVIDRGNQAIREIQLHDDDCSDNY---------------DDT---------FHLGIFVLV--AAAFFGYMLALLQR  263 (507)
Q Consensus       210 ~G~LyVaD~gn~rIr~I~l~~~~~~~~~---------------~~G---------~p~gIa~~~--~a~~~gy~~~~lq~  263 (507)
                      +++|||+|++|+|||+|++++...+...               ..|         .|.||+++.  +..|+++..--..+
T Consensus       390 ~g~lyVaD~~N~rIr~i~~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIr  469 (496)
T 3kya_A          390 EYDFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIR  469 (496)
T ss_dssp             CEEEEEEEGGGTEEEEECTTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCeEEEEECCCCEEEEEeCCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEE
Confidence            8999999999999999997763322210               011         377888885  56777776655555


Q ss_pred             cc
Q 010579          264 RV  265 (507)
Q Consensus       264 ~~  265 (507)
                      ++
T Consensus       470 ki  471 (496)
T 3kya_A          470 TI  471 (496)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.61  E-value=1.2e-13  Score=141.00  Aligned_cols=144  Identities=18%  Similarity=0.151  Sum_probs=112.7

Q ss_pred             CCeeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC-CCCEEEEe
Q 010579           83 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIAD  160 (507)
Q Consensus        83 ~~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~-dGnIYVAD  160 (507)
                      ..|.+|++|+ +|+||++|..+++|.+++.++..   ..++..               ..+..|++|++|+ +|.||++|
T Consensus       116 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~---~~~l~~---------------~~l~~P~~iavdp~~g~ly~td  177 (349)
T 3v64_C          116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH---RKVLLW---------------QSLEKPRAIALHPMEGTIYWTD  177 (349)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEEC---------------TTCSCEEEEEEETTTTEEEEEE
T ss_pred             CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc---eEEEEe---------------CCCCCcceEEEecCcCeEEEec
Confidence            4799999997 78999999999999999998422   222221               1367899999997 67899999


Q ss_pred             CCC-CeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee--
Q 010579          161 TMN-MAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD--  235 (507)
Q Consensus       161 s~N-~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~--  235 (507)
                      .++ ++|.+++.+|  ..++..                ..+..|++|++...++.||++|..+++|+++++++.....  
T Consensus       178 ~~~~~~I~r~~~dG~~~~~~~~----------------~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~  241 (349)
T 3v64_C          178 WGNTPRIEASSMDGSGRRIIAD----------------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVI  241 (349)
T ss_dssp             CSSSCEEEEEETTSCSCEESCC----------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             cCCCCEEEEEeCCCCCcEEEEE----------------CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEE
Confidence            998 9999999887  333321                2367899999765799999999999999999999865332  


Q ss_pred             CCCCCccceEEEEecceeEEehhHH
Q 010579          236 NYDDTFHLGIFVLVAAAFFGYMLAL  260 (507)
Q Consensus       236 ~~~~G~p~gIa~~~~a~~~gy~~~~  260 (507)
                      ....+.|.||++..+..|+.+....
T Consensus       242 ~~~~~~P~giav~~~~ly~td~~~~  266 (349)
T 3v64_C          242 SQGLPHPFAITVFEDSLYWTDWHTK  266 (349)
T ss_dssp             CSSCSSEEEEEEETTEEEEEETTTT
T ss_pred             eCCCCCceEEEEECCEEEEecCCCC
Confidence            3345689999998777777775543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.58  E-value=1.6e-13  Score=141.97  Aligned_cols=176  Identities=17%  Similarity=0.114  Sum_probs=125.3

Q ss_pred             CcEEEEEeCCCCeEEecCcceEeeCCeeeEEeecCCCCCCCeeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEE
Q 010579           44 VKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLV  122 (507)
Q Consensus        44 ~~~I~~~d~~t~~i~aG~~~~~~~~G~~~~~~~~G~~~~~~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~~v  122 (507)
                      ...||..|...+.+.     ....+|...+....  ..+..|.+|++|+ +|+||++|..+++|.++++++..   ..++
T Consensus       127 ~~~ly~~D~~~~~I~-----r~~~~g~~~~~~~~--~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~---~~~l  196 (386)
T 3v65_B          127 RELVFWSDVTLDRIL-----RANLNGSNVEEVVS--TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH---RKVL  196 (386)
T ss_dssp             TTEEEEEETTTTEEE-----EEETTSCCEEEEEC--SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS---CEEE
T ss_pred             CCeEEEEeCCCCcEE-----EEecCCCCcEEEEe--CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc---eEEe
Confidence            455666665555443     11223332333222  1234799999997 78899999999999999998422   2233


Q ss_pred             ecCCCCccccCCCCcccccCCCcceEEEcC-CCCEEEEeCCC-CeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccC
Q 010579          123 AGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTMN-MAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKF  198 (507)
Q Consensus       123 aG~~~G~~G~~dG~~~~a~fn~P~GIaVd~-dGnIYVADs~N-~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f  198 (507)
                      +.               ..|..|+||++|+ +|.||++|..+ ++|.+++.+|  ..++..                ..+
T Consensus       197 ~~---------------~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~----------------~~~  245 (386)
T 3v65_B          197 LW---------------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD----------------THL  245 (386)
T ss_dssp             EC---------------SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC----------------SSC
T ss_pred             ec---------------CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE----------------CCC
Confidence            21               1367999999997 67899999998 9999999887  444432                126


Q ss_pred             CCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee--CCCCCccceEEEEecceeEEehhHH
Q 010579          199 SNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD--NYDDTFHLGIFVLVAAAFFGYMLAL  260 (507)
Q Consensus       199 ~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~--~~~~G~p~gIa~~~~a~~~gy~~~~  260 (507)
                      ..|++|++...++.|||+|..+++|+++++++.....  ....+.|.||++..+..|+.+...-
T Consensus       246 ~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~  309 (386)
T 3v65_B          246 FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTK  309 (386)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTT
T ss_pred             CCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEECCEEEEeeCCCC
Confidence            6899999765889999999999999999998865332  3345679999998877777775443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.58  E-value=2.1e-13  Score=138.11  Aligned_cols=175  Identities=14%  Similarity=0.060  Sum_probs=124.5

Q ss_pred             CcEEEEEeCCCCeEEecCcceEeeCCee-eEEeecCCCCCCCeeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEE
Q 010579           44 VKWLWSLKDSPKTAVSSSSMIKFEGGYT-VETVFEGSKFGMEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKL  121 (507)
Q Consensus        44 ~~~I~~~d~~t~~i~aG~~~~~~~~G~~-~~~~~~G~~~~~~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~~  121 (507)
                      ...||..|...+.+..     ...+|.. ......  ..+..|.+|++|+ +|+||++|..+++|.++++++..   ..+
T Consensus        46 ~~~lyw~D~~~~~I~r-----~~~~g~~~~~~~~~--~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~---~~~  115 (318)
T 3sov_A           46 HGLIYWSDVSEEAIKR-----TEFNKTESVQNVVV--SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL---RKV  115 (318)
T ss_dssp             GTEEEEEETTTTEEEE-----EETTSSSCCCEEEE--ECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEE
T ss_pred             CCEEEEEECCCCcEEE-----EEccCCCceEEEEc--CCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc---EEE
Confidence            4677777776665541     1112221 111111  1234799999996 78999999999999999998421   233


Q ss_pred             EecCCCCccccCCCCcccccCCCcceEEEcC-CCCEEEEeCC-CCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCcc
Q 010579          122 VAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTM-NMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAK  197 (507)
Q Consensus       122 vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~-dGnIYVADs~-N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~  197 (507)
                      +..               ..+..|+||++|+ .|.||++|.+ +.+|.+++.+|  ..++..                ..
T Consensus       116 l~~---------------~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~----------------~~  164 (318)
T 3sov_A          116 LFW---------------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN----------------SE  164 (318)
T ss_dssp             EEC---------------SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEEC----------------SS
T ss_pred             EEe---------------CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEE----------------CC
Confidence            321               1367899999997 5889999976 79999999887  344431                13


Q ss_pred             CCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee--CCCCCccceEEEEecceeEEehhH
Q 010579          198 FSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD--NYDDTFHLGIFVLVAAAFFGYMLA  259 (507)
Q Consensus       198 f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~--~~~~G~p~gIa~~~~a~~~gy~~~  259 (507)
                      +..|++|++...++.||++|+.+++|+++++++.....  ....+.|.||++..+..|+.+...
T Consensus       165 l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~  228 (318)
T 3sov_A          165 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWST  228 (318)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTT
T ss_pred             CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCC
Confidence            67899999765789999999999999999998855432  234568999999887777766543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.56  E-value=5.6e-13  Score=138.84  Aligned_cols=142  Identities=16%  Similarity=0.137  Sum_probs=111.0

Q ss_pred             CCCeeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC-CCCEEEE
Q 010579           82 GMEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIA  159 (507)
Q Consensus        82 ~~~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~-dGnIYVA  159 (507)
                      +..|.+||||. .|+||++|..+++|.++++++.   ...+++.               ..+..|.+|++|+ .|.||++
T Consensus       158 ~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~---~~~~l~~---------------~~~~~P~~iavdp~~g~ly~t  219 (400)
T 3p5b_L          158 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV---KRKTLFR---------------ENGSKPRAIVVDPVHGFMYWT  219 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTC---SEEEEEE---------------CSSCCEEEEEEETTTTEEEEE
T ss_pred             CCCcccEEEEecCCceEEEECCCCeEEEEeCCCC---ceEEEEe---------------CCCCCcceEEEecccCeEEEE
Confidence            35799999998 7899999999999999999842   2233321               1367899999998 6789999


Q ss_pred             eCC-CCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceeeC
Q 010579          160 DTM-NMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN  236 (507)
Q Consensus       160 Ds~-N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~~  236 (507)
                      |.+ +++|.+++.+|  ..++..                ..+..|++|++...++.||++|..+++|+++++++......
T Consensus       220 d~~~~~~I~~~~~dG~~~~~~~~----------------~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~  283 (400)
T 3p5b_L          220 DWGTPAKIKKGGLNGVDIYSLVT----------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI  283 (400)
T ss_dssp             ECSSSCCEEEEETTSCSCEEEEC----------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEE
T ss_pred             eCCCCCEEEEEeCCCCccEEEEE----------------CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEE
Confidence            987 58999999888  444421                13678999997668899999999999999999998664331


Q ss_pred             ----CCCCccceEEEEecceeEEeh
Q 010579          237 ----YDDTFHLGIFVLVAAAFFGYM  257 (507)
Q Consensus       237 ----~~~G~p~gIa~~~~a~~~gy~  257 (507)
                          .....|.+|++..+..|+.+.
T Consensus       284 ~~~~~~l~~P~gl~v~~~~lywtd~  308 (400)
T 3p5b_L          284 LEDEKRLAHPFSLAVFEDKVFWTDI  308 (400)
T ss_dssp             EECSSTTSSEEEEEEETTEEEEEES
T ss_pred             EeCCCCCCCCEEEEEeCCEEEEecC
Confidence                234578899998777777663

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.56  E-value=1.1e-13  Score=138.22  Aligned_cols=152  Identities=15%  Similarity=0.197  Sum_probs=110.3

Q ss_pred             CCCCeeEEEEcCCCcEEEEeCCCC------------------------eEEEEeCCCCCCCccEEEecCCCCccccCCCC
Q 010579           81 FGMEPFSVAVSPSGELLVLDSENS------------------------NIYKISTSLSPYSRPKLVAGSPEGYYGHVDGR  136 (507)
Q Consensus        81 ~~~~P~gIaVd~dG~LYVaDs~n~------------------------rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~  136 (507)
                      .+..|.+|+++++|+|||+|..++                        +|++++..   .+++....+.           
T Consensus        22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~---~g~~~~~~~~-----------   87 (329)
T 3fvz_A           22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPN---NAEILQSSGK-----------   87 (329)
T ss_dssp             CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTT---TCCEEEEECT-----------
T ss_pred             ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECC---CCeEEeccCC-----------
Confidence            345899999999999999999884                        58888875   2444433332           


Q ss_pred             cccccCCCcceEEEcCCCCEEEEeCCCCeEEEEcCCC----cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcC-CC
Q 010579          137 PRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG----VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGS-SC  211 (507)
Q Consensus       137 ~~~a~fn~P~GIaVd~dGnIYVADs~N~rIrk~d~~G----VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~-~G  211 (507)
                         ..|+.|.+|++|++|+|||+|..+++|++++.+|    +.++.  ..+. .|     .....|..|.+|++ ++ ++
T Consensus        88 ---~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~--~~~~-~g-----~~~~~~~~P~~ia~-~~~~g  155 (329)
T 3fvz_A           88 ---NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILG--RSMQ-PG-----SDQNHFCQPTDVAV-EPSTG  155 (329)
T ss_dssp             ---TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEES--BTTB-CC-----CSTTCCSSEEEEEE-CTTTC
T ss_pred             ---CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEec--ccCC-CC-----CCccccCCCcEEEE-eCCCC
Confidence               2578999999999999999999999999999876    23332  1111 01     12346889999995 65 89


Q ss_pred             eEEEEeC-CCCeEEEEECCCCceeeCC--C---------CCccceEEEEe--cceeEEehh
Q 010579          212 SLLVIDR-GNQAIREIQLHDDDCSDNY--D---------DTFHLGIFVLV--AAAFFGYML  258 (507)
Q Consensus       212 ~LyVaD~-gn~rIr~I~l~~~~~~~~~--~---------~G~p~gIa~~~--~a~~~gy~~  258 (507)
                      .|||+|. .+++|++++.++.......  +         ...|.+|++..  +..|+.+..
T Consensus       156 ~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~  216 (329)
T 3fvz_A          156 AVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE  216 (329)
T ss_dssp             CEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT
T ss_pred             eEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC
Confidence            9999997 8999999998776544321  1         12488999985  344555543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.55  E-value=1.1e-12  Score=131.70  Aligned_cols=144  Identities=16%  Similarity=0.144  Sum_probs=111.0

Q ss_pred             CCCeeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC-CCCEEEE
Q 010579           82 GMEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIA  159 (507)
Q Consensus        82 ~~~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~-dGnIYVA  159 (507)
                      +..|.+|++|. +|+||++|..+++|.++++++.   ...+++.               ..+..|.+|++|+ +|.||++
T Consensus        76 ~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~---~~~~~~~---------------~~~~~P~~iavdp~~g~ly~~  137 (316)
T 1ijq_A           76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV---KRKTLFR---------------ENGSKPRAIVVDPVHGFMYWT  137 (316)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS---SEEEEEE---------------CTTCCEEEEEEETTTTEEEEE
T ss_pred             CCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC---ceEEEEE---------------CCCCCcceEEeCCCCCEEEEE
Confidence            35799999996 7789999999999999998742   2233321               1367899999997 6789999


Q ss_pred             eCCC-CeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceeeC
Q 010579          160 DTMN-MAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN  236 (507)
Q Consensus       160 Ds~N-~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~~  236 (507)
                      |.++ ++|.+++.+|  ..++..                ..+..|++|++...++.||++|..+++|.++++++......
T Consensus       138 d~~~~~~I~~~~~dG~~~~~~~~----------------~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~  201 (316)
T 1ijq_A          138 DWGTPAKIKKGGLNGVDIYSLVT----------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI  201 (316)
T ss_dssp             ECSSSCEEEEEETTSCCEEEEEC----------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             ccCCCCeEEEEcCCCCCeEEEEE----------------CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEE
Confidence            9986 8999999888  333321                13678999997657899999999999999999988554321


Q ss_pred             ----CCCCccceEEEEecceeEEehhH
Q 010579          237 ----YDDTFHLGIFVLVAAAFFGYMLA  259 (507)
Q Consensus       237 ----~~~G~p~gIa~~~~a~~~gy~~~  259 (507)
                          ...+.|.||++..+..|+.+...
T Consensus       202 ~~~~~~~~~P~giav~~~~ly~~d~~~  228 (316)
T 1ijq_A          202 LEDEKRLAHPFSLAVFEDKVFWTDIIN  228 (316)
T ss_dssp             EECTTTTSSEEEEEEETTEEEEEETTT
T ss_pred             eecCCccCCcEEEEEECCEEEEEECCC
Confidence                23457999999877777776543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.54  E-value=1.4e-12  Score=125.94  Aligned_cols=142  Identities=15%  Similarity=0.182  Sum_probs=106.9

Q ss_pred             CCeeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC-CCCEEEEe
Q 010579           83 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIAD  160 (507)
Q Consensus        83 ~~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~-dGnIYVAD  160 (507)
                      ..|.+|++|+ .|+|||+|..+++|.+++.++..   ...+...               .+..|.+|++|+ +|+|||+|
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~---~~~~~~~---------------~~~~P~~i~vd~~~g~lyv~~  140 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ---RRVLFDT---------------GLVNPRGIVTDPVRGNLYWTD  140 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEECS---------------SCSSEEEEEEETTTTEEEEEE
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC---EEEEEEC---------------CCCCccEEEEeeCCCEEEEEE
Confidence            5899999998 57899999999999999987422   2233211               257899999999 57899999


Q ss_pred             CC--CCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee-
Q 010579          161 TM--NMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD-  235 (507)
Q Consensus       161 s~--N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~-  235 (507)
                      ..  +++|.+++.+|  ..++..                ..+..|.+|++..+.+.|||+|.++++|+++++++..... 
T Consensus       141 ~~~~~~~I~~~~~dg~~~~~~~~----------------~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~  204 (267)
T 1npe_A          141 WNRDNPKIETSHMDGTNRRILAQ----------------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV  204 (267)
T ss_dssp             CCSSSCEEEEEETTSCCCEEEEC----------------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEE
T ss_pred             CCCCCcEEEEEecCCCCcEEEEE----------------CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEE
Confidence            87  68999999777  333321                1356899999755578999999999999999998754322 


Q ss_pred             CCCCCccceEEEEecceeEEehh
Q 010579          236 NYDDTFHLGIFVLVAAAFFGYML  258 (507)
Q Consensus       236 ~~~~G~p~gIa~~~~a~~~gy~~  258 (507)
                      ......|.+|++..+..|+.+..
T Consensus       205 ~~~~~~P~gi~~d~~~lyva~~~  227 (267)
T 1npe_A          205 LEGLQYPFAVTSYGKNLYYTDWK  227 (267)
T ss_dssp             EECCCSEEEEEEETTEEEEEETT
T ss_pred             ecCCCCceEEEEeCCEEEEEECC
Confidence            23345789999886666665543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.52  E-value=1.7e-12  Score=143.18  Aligned_cols=175  Identities=13%  Similarity=0.111  Sum_probs=127.2

Q ss_pred             CcEEEEEeCCCCeEEecCcceEeeCCeeeEEeecCCCCCCCeeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEE
Q 010579           44 VKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLV  122 (507)
Q Consensus        44 ~~~I~~~d~~t~~i~aG~~~~~~~~G~~~~~~~~G~~~~~~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~~v  122 (507)
                      ...|+..|...+.+.     ....+|...+.....  .+..|.|||||. .|+||++|..+++|.+++++|..   ..++
T Consensus       360 ~~~ly~sD~~~~~I~-----r~~~~g~~~~~v~~~--~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~---~~~l  429 (619)
T 3s94_A          360 EGYIYWTDDEVRAIR-----RSFIDGSGSQFVVTA--QIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM---RKIL  429 (619)
T ss_dssp             TTEEEEEETTTTEEE-----EEETTSCSCEEEECS--SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEE
T ss_pred             CCeEEEEeCCCCeEE-----EEEcCCCccEEEEEC--CCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe---EEEE
Confidence            456666666555544     222334333333321  235899999996 78899999999999999998532   2333


Q ss_pred             ecCCCCccccCCCCcccccCCCcceEEEcC-CCCEEEEeCCC-CeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccC
Q 010579          123 AGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTMN-MAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKF  198 (507)
Q Consensus       123 aG~~~G~~G~~dG~~~~a~fn~P~GIaVd~-dGnIYVADs~N-~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f  198 (507)
                      +.               ..|+.|++|++|+ +|.||++|.++ .+|.+++.+|  ..++..                ..|
T Consensus       430 ~~---------------~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~----------------~~l  478 (619)
T 3s94_A          430 IS---------------EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVN----------------TSL  478 (619)
T ss_dssp             EC---------------TTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC----------------SSC
T ss_pred             EE---------------CCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEe----------------CCC
Confidence            32               1378999999998 49999999875 8999999888  344431                237


Q ss_pred             CCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee--CCCCCccceEEEEecceeEEehhH
Q 010579          199 SNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD--NYDDTFHLGIFVLVAAAFFGYMLA  259 (507)
Q Consensus       199 ~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~--~~~~G~p~gIa~~~~a~~~gy~~~  259 (507)
                      ..|+||+++..+++||++|.++++|+++++++.....  ......|.|||+..+-.|+.+...
T Consensus       479 ~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~P~glav~~~~ly~tD~~~  541 (619)
T 3s94_A          479 GWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQR  541 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCCSSCCEEEETTEEEEECTTS
T ss_pred             CCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCCCCcEEEEEECCEEEEeecCC
Confidence            7999999766789999999999999999999876543  234457899999888777777543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.51  E-value=1.8e-12  Score=146.89  Aligned_cols=144  Identities=16%  Similarity=0.133  Sum_probs=111.1

Q ss_pred             CCCeeEEEEcCC-CcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCC-CCEEEE
Q 010579           82 GMEPFSVAVSPS-GELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDR-GNIYIA  159 (507)
Q Consensus        82 ~~~P~gIaVd~d-G~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~d-GnIYVA  159 (507)
                      +..|.|||||.. ++||++|..+++|.++++++.   ...+++..               .|..|.|||||+. |.||++
T Consensus       470 l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~---~~~~l~~~---------------~l~~P~gIaVDp~~g~LYwt  531 (791)
T 3m0c_C          470 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV---KRKTLFRE---------------NGSKPRAIVVDPVHGFMYWT  531 (791)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS---SEEEEEEC---------------TTCCEEEEEEETTTTEEEEE
T ss_pred             CCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC---eEEEEEeC---------------CCCCcceEEEecCCCCEEEe
Confidence            458999999974 589999999999999999842   23333321               3678999999985 889999


Q ss_pred             eCCC-CeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceeeC
Q 010579          160 DTMN-MAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN  236 (507)
Q Consensus       160 Ds~N-~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~~  236 (507)
                      |.++ ++|.+++.+|  +.++..                ..|..|++|++...+++|||+|..+++|+++++++......
T Consensus       532 D~g~~~~I~~~~~dG~~~~~lv~----------------~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v  595 (791)
T 3m0c_C          532 DWGTPAKIKKGGLNGVDIYSLVT----------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI  595 (791)
T ss_dssp             ECSSSCEEEEEETTSCCEEEEEC----------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             cCCCCCeEEEEecCCCceEEEEe----------------CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEE
Confidence            9986 8999999888  344421                23679999997658899999999999999999998765432


Q ss_pred             --C--CCCccceEEEEecceeEEehhH
Q 010579          237 --Y--DDTFHLGIFVLVAAAFFGYMLA  259 (507)
Q Consensus       237 --~--~~G~p~gIa~~~~a~~~gy~~~  259 (507)
                        .  ....|.+|++..+..|+.+...
T Consensus       596 ~~~~~~l~~P~glav~~~~lYwtD~~~  622 (791)
T 3m0c_C          596 LEDEKRLAHPFSLAVFEDKVFWTDIIN  622 (791)
T ss_dssp             EECTTTTSSEEEEEEETTEEEEEETTT
T ss_pred             ecCCCccCCCCEEEEeCCEEEEEECCC
Confidence              1  2335778888777777777443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.51  E-value=1.7e-12  Score=132.55  Aligned_cols=132  Identities=18%  Similarity=0.232  Sum_probs=98.8

Q ss_pred             CCCeeEEEEcC-CCcEEEEeCCC-CeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC-CCCEEE
Q 010579           82 GMEPFSVAVSP-SGELLVLDSEN-SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYI  158 (507)
Q Consensus        82 ~~~P~gIaVd~-dG~LYVaDs~n-~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~-dGnIYV  158 (507)
                      +..|.+|++|| +|.||++|..+ ++|.+++++|    .....+..              ..+..|+||++|+ ++.|||
T Consensus       158 l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG----~~~~~~~~--------------~~~~~PnGla~d~~~~~lY~  219 (349)
T 3v64_C          158 LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG----SGRRIIAD--------------THLFWPNGLTIDYAGRRMYW  219 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS----CSCEESCC--------------SSCSCEEEEEEETTTTEEEE
T ss_pred             CCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC----CCcEEEEE--------------CCCCCcceEEEeCCCCEEEE
Confidence            46899999998 78899999998 9999999984    22222211              1367899999996 678999


Q ss_pred             EeCCCCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEEC-CCCceee
Q 010579          159 ADTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQL-HDDDCSD  235 (507)
Q Consensus       159 ADs~N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l-~~~~~~~  235 (507)
                      +|+.+++|.+++.+|  ..++...                .+..|.+|++  .++.||++|.++++|++++. .+.....
T Consensus       220 aD~~~~~I~~~~~dG~~~~~~~~~----------------~~~~P~giav--~~~~ly~td~~~~~V~~~~~~~G~~~~~  281 (349)
T 3v64_C          220 VDAKHHVIERANLDGSHRKAVISQ----------------GLPHPFAITV--FEDSLYWTDWHTKSINSANKFTGKNQEI  281 (349)
T ss_dssp             EETTTTEEEEEETTSCSCEEEECS----------------SCSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred             EECCCCEEEEEeCCCCceEEEEeC----------------CCCCceEEEE--ECCEEEEecCCCCeEEEEEccCCCccEE
Confidence            999999999999777  3444321                2568999996  46899999999999999994 4443332


Q ss_pred             -CCCCCccceEEEEe
Q 010579          236 -NYDDTFHLGIFVLV  249 (507)
Q Consensus       236 -~~~~G~p~gIa~~~  249 (507)
                       ......|.+|++..
T Consensus       282 i~~~~~~p~gi~v~~  296 (349)
T 3v64_C          282 IRNKLHFPMDIHTLH  296 (349)
T ss_dssp             EECSCSCCCCEEEEC
T ss_pred             eccCCCCCceEEEEc
Confidence             22334567777654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.48  E-value=2.7e-12  Score=132.83  Aligned_cols=132  Identities=20%  Similarity=0.260  Sum_probs=98.6

Q ss_pred             CCCeeEEEEcC-CCcEEEEeCCC-CeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC-CCCEEE
Q 010579           82 GMEPFSVAVSP-SGELLVLDSEN-SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYI  158 (507)
Q Consensus        82 ~~~P~gIaVd~-dG~LYVaDs~n-~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~-dGnIYV  158 (507)
                      +..|.+|++|+ +|.||++|..+ ++|+++++++.   ...+++..               .+..|+||++|+ +++|||
T Consensus       201 l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~---~~~~~~~~---------------~~~~PnGlavd~~~~~lY~  262 (386)
T 3v65_B          201 LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS---GRRIIADT---------------HLFWPNGLTIDYAGRRMYW  262 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---SCEEEECS---------------SCSCEEEEEEEGGGTEEEE
T ss_pred             CCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC---CcEEEEEC---------------CCCCeeeEEEeCCCCEEEE
Confidence            46899999997 67899999998 99999999842   22233221               367899999995 678999


Q ss_pred             EeCCCCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEEC-CCCceee
Q 010579          159 ADTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQL-HDDDCSD  235 (507)
Q Consensus       159 ADs~N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l-~~~~~~~  235 (507)
                      +|+.+++|++++.+|  ..++..                ..+..|.+|++  .++.||++|.++++|++++. .+.....
T Consensus       263 aD~~~~~I~~~d~dG~~~~~~~~----------------~~~~~P~giav--~~~~ly~td~~~~~V~~~~~~~G~~~~~  324 (386)
T 3v65_B          263 VDAKHHVIERANLDGSHRKAVIS----------------QGLPHPFAITV--FEDSLYWTDWHTKSINSANKFTGKNQEI  324 (386)
T ss_dssp             EETTTTEEEEECTTSCSCEEEEC----------------SSCSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred             EECCCCEEEEEeCCCCeeEEEEE----------------CCCCCceEEEE--ECCEEEEeeCCCCeEEEEECCCCcceEE
Confidence            999999999999777  344432                12568999996  56799999999999999994 4433322


Q ss_pred             -CCCCCccceEEEEe
Q 010579          236 -NYDDTFHLGIFVLV  249 (507)
Q Consensus       236 -~~~~G~p~gIa~~~  249 (507)
                       ......|.+|++..
T Consensus       325 i~~~~~~p~gi~v~~  339 (386)
T 3v65_B          325 IRNKLHFPMDIHTLH  339 (386)
T ss_dssp             EECSCSCCCCEEEES
T ss_pred             EccCCCCCceEEEEc
Confidence             22334567777653

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.48  E-value=4.3e-12  Score=140.22  Aligned_cols=175  Identities=17%  Similarity=0.089  Sum_probs=126.4

Q ss_pred             CCcEEEEEeCCCCeEEecCcceEeeCCeeeEEeecCCCCCCCeeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEE
Q 010579           43 LVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKL  121 (507)
Q Consensus        43 g~~~I~~~d~~t~~i~aG~~~~~~~~G~~~~~~~~G~~~~~~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~~  121 (507)
                      ....||..|...+.+.     ....+|...+.....  .+..|.|||+|. .|+||++|..+++|.+++++|..   ..+
T Consensus        47 ~~~~lywtD~~~~~I~-----r~~~~g~~~~~v~~~--g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~---~~~  116 (628)
T 4a0p_A           47 TDNRIYWTDISLKTIS-----RAFMNGSALEHVVEF--GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH---RQV  116 (628)
T ss_dssp             TTTEEEEEETTTTEEE-----EEETTSCSCEEEECS--SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT---CEE
T ss_pred             CCCEEEEEECCCCeEE-----EEECCCCCcEEEEeC--CCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc---EEE
Confidence            3456666666655544     112233333333321  124799999996 67899999999999999998432   233


Q ss_pred             EecCCCCccccCCCCcccccCCCcceEEEcC-CCCEEEEeCC-CCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCcc
Q 010579          122 VAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTM-NMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAK  197 (507)
Q Consensus       122 vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~-dGnIYVADs~-N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~  197 (507)
                      +..               ..|..|.+|++|+ +|.||++|.+ +.+|.+++.+|  +.+++.                 .
T Consensus       117 l~~---------------~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-----------------~  164 (628)
T 4a0p_A          117 LVW---------------KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-----------------N  164 (628)
T ss_dssp             EEC---------------SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-----------------S
T ss_pred             EEe---------------CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-----------------C
Confidence            321               1378899999997 7899999987 88999999887  455531                 2


Q ss_pred             CCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee-CCCCCccceEEEEecceeEEehhH
Q 010579          198 FSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD-NYDDTFHLGIFVLVAAAFFGYMLA  259 (507)
Q Consensus       198 f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~-~~~~G~p~gIa~~~~a~~~gy~~~  259 (507)
                      +..|++|++...+++||++|..+++|+++++++..... ......|.||++..+..|+.+...
T Consensus       165 ~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~~~ly~tD~~~  227 (628)
T 4a0p_A          165 VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSR  227 (628)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEETTEEEEEETTT
T ss_pred             CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEECCEEEEecCCC
Confidence            66899999766689999999999999999998865432 233456889999988778877543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.47  E-value=7.7e-12  Score=120.55  Aligned_cols=135  Identities=16%  Similarity=0.295  Sum_probs=102.4

Q ss_pred             CCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           83 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      ..|.+|+++++|+|||+|..+++|++++.+    +......+..             ..+..|.+|++|++|+|||+|..
T Consensus       121 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~----g~~~~~~~~~-------------~~~~~p~~i~~~~~g~l~v~~~~  183 (286)
T 1q7f_A          121 QHPRGVTVDNKGRIIVVECKVMRVIIFDQN----GNVLHKFGCS-------------KHLEFPNGVVVNDKQEIFISDNR  183 (286)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECTT----SCEEEEEECT-------------TTCSSEEEEEECSSSEEEEEEGG
T ss_pred             CCceEEEEeCCCCEEEEECCCCEEEEEcCC----CCEEEEeCCC-------------CccCCcEEEEECCCCCEEEEECC
Confidence            579999999999999999999999999986    3333333221             13678999999999999999999


Q ss_pred             CCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCC-eEEEEECCCCceeeC---
Q 010579          163 NMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQ-AIREIQLHDDDCSDN---  236 (507)
Q Consensus       163 N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~-rIr~I~l~~~~~~~~---  236 (507)
                      +++|++++.+|  +.++..               ...+..|.+|+ ++.+|+|||++..++ +|++++.++......   
T Consensus       184 ~~~i~~~~~~g~~~~~~~~---------------~g~~~~p~~i~-~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~  247 (286)
T 1q7f_A          184 AHCVKVFNYEGQYLRQIGG---------------EGITNYPIGVG-INSNGEILIADNHNNFNLTIFTQDGQLISALESK  247 (286)
T ss_dssp             GTEEEEEETTCCEEEEESC---------------TTTSCSEEEEE-ECTTCCEEEEECSSSCEEEEECTTSCEEEEEEES
T ss_pred             CCEEEEEcCCCCEEEEEcc---------------CCccCCCcEEE-ECCCCCEEEEeCCCCEEEEEECCCCCEEEEEccc
Confidence            99999999877  344421               11256899998 588999999999987 999999876543321   


Q ss_pred             CCCCccceEEEEec
Q 010579          237 YDDTFHLGIFVLVA  250 (507)
Q Consensus       237 ~~~G~p~gIa~~~~  250 (507)
                      .....|.+|++...
T Consensus       248 ~~~~~~~~i~~~~~  261 (286)
T 1q7f_A          248 VKHAQCFDVALMDD  261 (286)
T ss_dssp             SCCSCEEEEEEETT
T ss_pred             CCCCcceeEEECCC
Confidence            12224667877654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.46  E-value=7e-12  Score=125.83  Aligned_cols=114  Identities=21%  Similarity=0.254  Sum_probs=90.3

Q ss_pred             CCCeeEEEEcC-CCcEEEEeCCC-CeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC-CCCEEE
Q 010579           82 GMEPFSVAVSP-SGELLVLDSEN-SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYI  158 (507)
Q Consensus        82 ~~~P~gIaVd~-dG~LYVaDs~n-~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~-dGnIYV  158 (507)
                      +..|.+|++|| +|.||++|..+ ++|.+++++|    ....+...              ..+..|+||++|+ ++.||+
T Consensus       119 ~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG----~~~~~~~~--------------~~~~~P~gla~d~~~~~lY~  180 (316)
T 1ijq_A          119 GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG----VDIYSLVT--------------ENIQWPNGITLDLLSGRLYW  180 (316)
T ss_dssp             TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS----CCEEEEEC--------------SSCSCEEEEEEETTTTEEEE
T ss_pred             CCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC----CCeEEEEE--------------CCCCCceEEEEeccCCEEEE
Confidence            46899999998 78899999986 8999999984    33332221              1367999999996 567999


Q ss_pred             EeCCCCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECC
Q 010579          159 ADTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH  229 (507)
Q Consensus       159 ADs~N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~  229 (507)
                      +|+.+++|.+++.+|  ..+++..              ...+..|.+|++ + ++.||++|.++++|.++++.
T Consensus       181 ~D~~~~~I~~~d~dg~~~~~~~~~--------------~~~~~~P~giav-~-~~~ly~~d~~~~~V~~~~~~  237 (316)
T 1ijq_A          181 VDSKLHSISSIDVNGGNRKTILED--------------EKRLAHPFSLAV-F-EDKVFWTDIINEAIFSANRL  237 (316)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEEC--------------TTTTSSEEEEEE-E-TTEEEEEETTTTEEEEEETT
T ss_pred             EECCCCeEEEEecCCCceEEEeec--------------CCccCCcEEEEE-E-CCEEEEEECCCCeEEEEeCC
Confidence            999999999999877  5555321              123668999996 4 58999999999999999974

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.46  E-value=8.1e-12  Score=120.58  Aligned_cols=133  Identities=17%  Similarity=0.198  Sum_probs=99.6

Q ss_pred             CCeeEEEEcC-CCcEEEEeCC--CCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCC-CCEEE
Q 010579           83 MEPFSVAVSP-SGELLVLDSE--NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDR-GNIYI  158 (507)
Q Consensus        83 ~~P~gIaVd~-dG~LYVaDs~--n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~d-GnIYV  158 (507)
                      ..|.+|++|+ +|.|||+|..  +++|.+++.++..   ..++..               ..+..|+||++|++ +.|||
T Consensus       122 ~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~---~~~~~~---------------~~~~~P~gia~d~~~~~lyv  183 (267)
T 1npe_A          122 VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN---RRILAQ---------------DNLGLPNGLTFDAFSSQLCW  183 (267)
T ss_dssp             SSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC---CEEEEC---------------TTCSCEEEEEEETTTTEEEE
T ss_pred             CCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC---cEEEEE---------------CCCCCCcEEEEcCCCCEEEE
Confidence            5899999999 6889999987  6899999987421   222221               13578999999996 56999


Q ss_pred             EeCCCCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee-
Q 010579          159 ADTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD-  235 (507)
Q Consensus       159 ADs~N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~-  235 (507)
                      +|..+++|.+++.+|  +.++..                 .+..|.+|++ + ++.|||+|.++++|+++++.+..... 
T Consensus       184 ~d~~~~~I~~~~~~g~~~~~~~~-----------------~~~~P~gi~~-d-~~~lyva~~~~~~v~~~d~~~g~~~~~  244 (267)
T 1npe_A          184 VDAGTHRAECLNPAQPGRRKVLE-----------------GLQYPFAVTS-Y-GKNLYYTDWKTNSVIAMDLAISKEMDT  244 (267)
T ss_dssp             EETTTTEEEEEETTEEEEEEEEE-----------------CCCSEEEEEE-E-TTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EECCCCEEEEEecCCCceEEEec-----------------CCCCceEEEE-e-CCEEEEEECCCCeEEEEeCCCCCceEE
Confidence            999999999999877  233311                 1457899984 5 68999999999999999998655332 


Q ss_pred             C-CC-CCccceEEEEecce
Q 010579          236 N-YD-DTFHLGIFVLVAAA  252 (507)
Q Consensus       236 ~-~~-~G~p~gIa~~~~a~  252 (507)
                      . .+ ...|.||++....+
T Consensus       245 i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          245 FHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             ECCSSCCCCCCEEEECSCC
T ss_pred             EccccccccceeeecCccC
Confidence            2 22 22588998876544

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.45  E-value=9.4e-12  Score=137.48  Aligned_cols=178  Identities=13%  Similarity=0.112  Sum_probs=127.1

Q ss_pred             cCCcEEEEEeCCCCeEEecCcceEeeCCeeeEEeecC----CCCCCCeeEEEEcCC-CcEEEEeCCCCeEEEEeCCCCCC
Q 010579           42 ALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEG----SKFGMEPFSVAVSPS-GELLVLDSENSNIYKISTSLSPY  116 (507)
Q Consensus        42 ag~~~I~~~d~~t~~i~aG~~~~~~~~G~~~~~~~~G----~~~~~~P~gIaVd~d-G~LYVaDs~n~rI~ki~~~g~~~  116 (507)
                      ...+.|+..|...+.+.     ....+|...+.+...    ......|.|||+|.. ++||++|+.+++|.+++.+|   
T Consensus       349 ~~~~~iy~sD~~~~~I~-----r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G---  420 (628)
T 4a0p_A          349 PLDKQLYWIDSRQNMIR-----KAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDG---  420 (628)
T ss_dssp             TTTTEEEEEETTTTEEE-----EEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTS---
T ss_pred             cCCCeEEEEecCcceEE-----EEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCC---
Confidence            34466666666655554     222334333333221    112458999999985 67999999999999999984   


Q ss_pred             CccEEEecCCCCccccCCCCcccccCCCcceEEEcC-CCCEEEEeCCCC--eEEEEcCCC--cEEEecCcccCCCCCCCC
Q 010579          117 SRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTMNM--AIRKISDTG--VTTIAGGKWSRGVGHVDG  191 (507)
Q Consensus       117 g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~-dGnIYVADs~N~--rIrk~d~~G--VstIaGG~~g~~~G~~dg  191 (507)
                       ....++..              ..++.|++|++|+ +|.||++|.+++  +|.+++.+|  ..++..            
T Consensus       421 -~~~~~l~~--------------~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~------------  473 (628)
T 4a0p_A          421 -RSVGVVLK--------------GEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFF------------  473 (628)
T ss_dssp             -CEEEEEEE--------------CTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEEC------------
T ss_pred             -CeEEEEEe--------------CCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEe------------
Confidence             33322211              1367899999999 899999999987  799999888  455532            


Q ss_pred             CccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceeeC--CCCCccceEEEEecceeEEehh
Q 010579          192 PSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN--YDDTFHLGIFVLVAAAFFGYML  258 (507)
Q Consensus       192 ~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~~--~~~G~p~gIa~~~~a~~~gy~~  258 (507)
                          ..+..|++|+++..+++||++|..+++|+++++++..-...  .....|.|||+..+..|+.+..
T Consensus       474 ----~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~~~~~~~~~~P~glav~~~~ly~tD~~  538 (628)
T 4a0p_A          474 ----SGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVFENWLYWIDKQ  538 (628)
T ss_dssp             ----SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCEEEEEEETTEEEEEETT
T ss_pred             ----ccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceEEEEcCCCCCcEEEEEECCEEEEEECC
Confidence                13779999997666799999999999999999998664432  3345689999988877777743

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.44  E-value=1.2e-11  Score=119.19  Aligned_cols=135  Identities=17%  Similarity=0.295  Sum_probs=102.4

Q ss_pred             CCCeeEEEE-cCCCcEEEEeCC-CCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEE
Q 010579           82 GMEPFSVAV-SPSGELLVLDSE-NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIA  159 (507)
Q Consensus        82 ~~~P~gIaV-d~dG~LYVaDs~-n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVA  159 (507)
                      ...|.+|++ +++|+|||++.. +++|++++.+    +......+.              ..+..|.+|++|++|+|||+
T Consensus        76 ~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~----g~~~~~~~~--------------~~~~~~~~i~~~~~g~l~v~  137 (286)
T 1q7f_A           76 LLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY----GQFVRKFGA--------------TILQHPRGVTVDNKGRIIVV  137 (286)
T ss_dssp             BSSEEEEEEETTTTEEEEEECGGGCEEEEECTT----SCEEEEECT--------------TTCSCEEEEEECTTSCEEEE
T ss_pred             ccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC----CcEEEEecC--------------ccCCCceEEEEeCCCCEEEE
Confidence            357999999 579999999975 7999999976    433322221              13568999999999999999


Q ss_pred             eCCCCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceeeCC
Q 010579          160 DTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNY  237 (507)
Q Consensus       160 Ds~N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~~~  237 (507)
                      |..+++|++++.+|  +.++..               ...+..|.+|+ ++.+|+|||+|..+++|+++++++.......
T Consensus       138 ~~~~~~i~~~~~~g~~~~~~~~---------------~~~~~~p~~i~-~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~  201 (286)
T 1q7f_A          138 ECKVMRVIIFDQNGNVLHKFGC---------------SKHLEFPNGVV-VNDKQEIFISDNRAHCVKVFNYEGQYLRQIG  201 (286)
T ss_dssp             ETTTTEEEEECTTSCEEEEEEC---------------TTTCSSEEEEE-ECSSSEEEEEEGGGTEEEEEETTCCEEEEES
T ss_pred             ECCCCEEEEEcCCCCEEEEeCC---------------CCccCCcEEEE-ECCCCCEEEEECCCCEEEEEcCCCCEEEEEc
Confidence            99999999999877  333311               12356799998 5888999999999999999999776544322


Q ss_pred             CC---CccceEEEEec
Q 010579          238 DD---TFHLGIFVLVA  250 (507)
Q Consensus       238 ~~---G~p~gIa~~~~  250 (507)
                      ..   ..|.+|++...
T Consensus       202 ~~g~~~~p~~i~~d~~  217 (286)
T 1q7f_A          202 GEGITNYPIGVGINSN  217 (286)
T ss_dssp             CTTTSCSEEEEEECTT
T ss_pred             cCCccCCCcEEEECCC
Confidence            22   46888888654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.44  E-value=1.1e-11  Score=125.40  Aligned_cols=132  Identities=19%  Similarity=0.198  Sum_probs=98.0

Q ss_pred             CCCeeEEEEcC-CCcEEEEeCC-CCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC-CCCEEE
Q 010579           82 GMEPFSVAVSP-SGELLVLDSE-NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYI  158 (507)
Q Consensus        82 ~~~P~gIaVd~-dG~LYVaDs~-n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~-dGnIYV  158 (507)
                      +..|.+|++|+ .|.||++|.. +++|.+++++|..   ..+++..               .+..|+||++|+ +++||+
T Consensus       121 ~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~---~~~~~~~---------------~l~~Pnglavd~~~~~lY~  182 (318)
T 3sov_A          121 LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS---RFIIINS---------------EIYWPNGLTLDYEEQKLYW  182 (318)
T ss_dssp             CSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS---CEEEECS---------------SCSCEEEEEEETTTTEEEE
T ss_pred             CCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC---eEEEEEC---------------CCCCccEEEEeccCCEEEE
Confidence            46899999998 6899999975 7999999998421   2233211               377999999997 677999


Q ss_pred             EeCCCCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCC-Cceee
Q 010579          159 ADTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD-DDCSD  235 (507)
Q Consensus       159 ADs~N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~-~~~~~  235 (507)
                      +|+.+++|++++.+|  ..+++.                ..+..|.+|++ + .+.||++|.++++|.++++.. .....
T Consensus       183 aD~~~~~I~~~d~dG~~~~~~~~----------------~~~~~P~glav-~-~~~lywtd~~~~~V~~~~~~~G~~~~~  244 (318)
T 3sov_A          183 ADAKLNFIHKSNLDGTNRQAVVK----------------GSLPHPFALTL-F-EDILYWTDWSTHSILACNKYTGEGLRE  244 (318)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEC----------------SCCSCEEEEEE-E-TTEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred             EECCCCEEEEEcCCCCceEEEec----------------CCCCCceEEEE-e-CCEEEEEecCCCeEEEEECCCCCceEE
Confidence            999999999999877  455531                13668999995 4 569999999999999999853 32221


Q ss_pred             -CCCCCccceEEEEe
Q 010579          236 -NYDDTFHLGIFVLV  249 (507)
Q Consensus       236 -~~~~G~p~gIa~~~  249 (507)
                       ......|.+|++.-
T Consensus       245 i~~~~~~P~~i~v~~  259 (318)
T 3sov_A          245 IHSDIFSPMDIHAFS  259 (318)
T ss_dssp             EECCCSSCCCEEEEC
T ss_pred             EeCCCCCCcEEEEec
Confidence             22233566666543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.43  E-value=9.9e-12  Score=129.42  Aligned_cols=134  Identities=19%  Similarity=0.208  Sum_probs=98.0

Q ss_pred             CCCeeEEEEcC-CCcEEEEeCC-CCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC-CCCEEE
Q 010579           82 GMEPFSVAVSP-SGELLVLDSE-NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYI  158 (507)
Q Consensus        82 ~~~P~gIaVd~-dG~LYVaDs~-n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~-dGnIYV  158 (507)
                      +..|.+|++|+ +|.||++|.+ +++|.+++++|.   ...+++.               ..|..|+|||+|+ +++||+
T Consensus       201 ~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~---~~~~~~~---------------~~l~~P~glavd~~~~~lY~  262 (400)
T 3p5b_L          201 GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---DIYSLVT---------------ENIQWPNGITLDLLSGRLYW  262 (400)
T ss_dssp             SCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC---SCEEEEC---------------SSCSCEEEEEEETTTTEEEE
T ss_pred             CCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC---ccEEEEE---------------CCCCceEEEEEEeCCCEEEE
Confidence            46799999998 7889999987 589999999842   2223321               1377999999996 577999


Q ss_pred             EeCCCCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECC-CCceee
Q 010579          159 ADTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH-DDDCSD  235 (507)
Q Consensus       159 ADs~N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~-~~~~~~  235 (507)
                      ||+.+++|++++.+|  ..+++.+              ...+..|.+|++  .++.||++|.++++|++++.. +.....
T Consensus       263 aD~~~~~I~~~d~dG~~~~~~~~~--------------~~~l~~P~gl~v--~~~~lywtd~~~~~V~~~~~~~G~~~~~  326 (400)
T 3p5b_L          263 VDSKLHSISSIDVNGGNRKTILED--------------EKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRLTGSDVNL  326 (400)
T ss_dssp             EETTTTEEEEEETTSCCCEEEEEC--------------SSTTSSEEEEEE--ETTEEEEEESSSCSEEEEESSSCCCCEE
T ss_pred             EECCCCEEEEEeCCCCccEEEEeC--------------CCCCCCCEEEEE--eCCEEEEecCCCCeEEEEEcCCCCceEE
Confidence            999999999999877  4555321              124678999985  467999999999999999954 333322


Q ss_pred             -CCCCCccceEEEEe
Q 010579          236 -NYDDTFHLGIFVLV  249 (507)
Q Consensus       236 -~~~~G~p~gIa~~~  249 (507)
                       ......|.+|++.-
T Consensus       327 i~~~~~~p~~i~v~~  341 (400)
T 3p5b_L          327 LAENLLSPEDMVLFH  341 (400)
T ss_dssp             EECSCSCEEEEEEES
T ss_pred             EecCCCCCceEEEEe
Confidence             22223466666543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.42  E-value=1.4e-11  Score=135.88  Aligned_cols=143  Identities=15%  Similarity=0.105  Sum_probs=109.0

Q ss_pred             CCeeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCC-CCEEEEe
Q 010579           83 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDR-GNIYIAD  160 (507)
Q Consensus        83 ~~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~d-GnIYVAD  160 (507)
                      ..|.|||+|. .|+||++|..+++|.+++.+|.   ...+++.               ..|+.|.+|++|+. |.||++|
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~---~~~~l~~---------------~~l~~P~~Iavdp~~g~ly~tD  145 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS---LRKVLFW---------------QELDQPRAIALDPSSGFMYWTD  145 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEEC---------------SSCSCCCCEEEETTTTEEEEEE
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC---CEEEEEe---------------CCCCCCceEEEecCCCeEEEec
Confidence            4799999998 6789999999999999999842   2233332               13789999999985 7899999


Q ss_pred             CC-CCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceeeC-
Q 010579          161 TM-NMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN-  236 (507)
Q Consensus       161 s~-N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~~-  236 (507)
                      .+ +.+|.+++.+|  ..++..                ..+..|+||++...+++||++|..+++|+++++++..-... 
T Consensus       146 ~g~~~~I~r~~~dG~~~~~l~~----------------~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~  209 (619)
T 3s94_A          146 WGEVPKIERAGMDGSSRFIIIN----------------SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV  209 (619)
T ss_dssp             CSSSCEEEEEETTSCSCEEEEC----------------SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---
T ss_pred             cCCCCEEEEEECCCCceEEEEe----------------CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEE
Confidence            87 67999999888  445532                13678999997667899999999999999999998654332 


Q ss_pred             -CCCCccceEEEEecceeEEehhH
Q 010579          237 -YDDTFHLGIFVLVAAAFFGYMLA  259 (507)
Q Consensus       237 -~~~G~p~gIa~~~~a~~~gy~~~  259 (507)
                       .....|.||++..+..|+.+...
T Consensus       210 ~~~~~~P~gi~~~~~~ly~td~~~  233 (619)
T 3s94_A          210 KGSLPHPFALTLFEDILYWTDWST  233 (619)
T ss_dssp             ------CCCEEESSSEEEEECTTT
T ss_pred             eCCCCCceEEEEeCCEEEEecCCC
Confidence             23446899999887777776543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.41  E-value=1.4e-11  Score=139.58  Aligned_cols=134  Identities=19%  Similarity=0.210  Sum_probs=98.2

Q ss_pred             CCCeeEEEEcC-CCcEEEEeCCC-CeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC-CCCEEE
Q 010579           82 GMEPFSVAVSP-SGELLVLDSEN-SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYI  158 (507)
Q Consensus        82 ~~~P~gIaVd~-dG~LYVaDs~n-~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~-dGnIYV  158 (507)
                      +..|.+|+||+ .|.||++|.++ ++|.+++++|.   ...+++.               ..|..|+|||+|+ +|+|||
T Consensus       513 l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~---~~~~lv~---------------~~l~~P~GLavD~~~~~LYw  574 (791)
T 3m0c_C          513 GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---DIYSLVT---------------ENIQWPNGITLDLLSGRLYW  574 (791)
T ss_dssp             TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---CEEEEEC---------------SSCSCEEEEEEETTTTEEEE
T ss_pred             CCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC---ceEEEEe---------------CCCCCceEEEEecCCCeEEE
Confidence            45799999998 58999999886 89999999842   2223321               1378999999995 678999


Q ss_pred             EeCCCCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCC-ceee
Q 010579          159 ADTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD-DCSD  235 (507)
Q Consensus       159 ADs~N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~-~~~~  235 (507)
                      ||..+++|++++.+|  +.+++.+              ...|..|.+|++  ..+.||++|..+++|++++...+ ....
T Consensus       575 aD~~~~~I~~~d~dG~~~~~v~~~--------------~~~l~~P~glav--~~~~lYwtD~~~~~I~~~dk~tG~~~~~  638 (791)
T 3m0c_C          575 VDSKLHSISSIDVNGGNRKTILED--------------EKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRLTGSDVNL  638 (791)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEEC--------------TTTTSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCCCCEE
T ss_pred             EeCCCCcEEEEecCCCceEEEecC--------------CCccCCCCEEEE--eCCEEEEEECCCCEEEEEeCCCCcceEE
Confidence            999999999999887  4555321              124778999985  45699999999999999986433 2222


Q ss_pred             -CCCCCccceEEEEe
Q 010579          236 -NYDDTFHLGIFVLV  249 (507)
Q Consensus       236 -~~~~G~p~gIa~~~  249 (507)
                       ......|.+|++.-
T Consensus       639 l~~~l~~P~~i~v~h  653 (791)
T 3m0c_C          639 LAENLLSPEDMVLFH  653 (791)
T ss_dssp             EECSCSCCCCEEEES
T ss_pred             eecCCCCceeEeeec
Confidence             22233466666543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.39  E-value=2.8e-11  Score=114.83  Aligned_cols=141  Identities=18%  Similarity=0.261  Sum_probs=102.9

Q ss_pred             CCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           83 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      ..|.+|+++++|+|||+|..+++|++++...   ... ....              ...+..|.+|++|++|+|||+|..
T Consensus       108 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~---~~~-~~~~--------------~~~~~~p~~i~~~~~g~l~v~~~~  169 (270)
T 1rwi_B          108 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGS---KTQ-TVLP--------------FTGLNDPDGVAVDNSGNVYVTDTD  169 (270)
T ss_dssp             SSEEEEEECTTCCEEEEEGGGTEEEEECTTC---CSC-EECC--------------CCSCCSCCCEEECTTCCEEEEEGG
T ss_pred             CCCcceEECCCCCEEEEECCCCEEEEEECCC---cee-Eeec--------------cccCCCceeEEEeCCCCEEEEECC
Confidence            5799999999999999999999999996531   111 1110              113568999999999999999999


Q ss_pred             CCeEEEEcCCCcEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceeeCCCC--C
Q 010579          163 NMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDD--T  240 (507)
Q Consensus       163 N~rIrk~d~~GVstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~~~~~--G  240 (507)
                      +++|.+++.++-......              ...+..|.+|+ ++.+|+|||++..+++|+++++++.........  .
T Consensus       170 ~~~i~~~~~~~~~~~~~~--------------~~~~~~p~~i~-~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~  234 (270)
T 1rwi_B          170 NNRVVKLEAESNNQVVLP--------------FTDITAPWGIA-VDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLN  234 (270)
T ss_dssp             GTEEEEECTTTCCEEECC--------------CSSCCSEEEEE-ECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCS
T ss_pred             CCEEEEEecCCCceEeec--------------ccCCCCceEEE-ECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCC
Confidence            999999997762211100              11246789998 588899999999999999999988665543322  3


Q ss_pred             ccceEEEEec-ceeEEe
Q 010579          241 FHLGIFVLVA-AAFFGY  256 (507)
Q Consensus       241 ~p~gIa~~~~-a~~~gy  256 (507)
                      .|.+|++... ..++++
T Consensus       235 ~p~~i~~~~~g~l~v~~  251 (270)
T 1rwi_B          235 TPLAVAVDSDRTVYVAD  251 (270)
T ss_dssp             CEEEEEECTTCCEEEEE
T ss_pred             CceeEEECCCCCEEEEE
Confidence            5778887643 334443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.37  E-value=4.2e-11  Score=113.63  Aligned_cols=139  Identities=24%  Similarity=0.321  Sum_probs=102.6

Q ss_pred             CCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           83 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      ..|.+|+++++|+|||++. +++|++++.++.   ....+. .              ..+..|.+|++|++|+|||+|..
T Consensus        67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~---~~~~~~-~--------------~~~~~p~~i~~~~~g~l~v~~~~  127 (270)
T 1rwi_B           67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSN---NQTVLP-F--------------DGLNYPEGLAVDTQGAVYVADRG  127 (270)
T ss_dssp             CSCCCEEECTTCCEEEEET-TTEEEEECTTCS---CCEECC-C--------------CSCSSEEEEEECTTCCEEEEEGG
T ss_pred             CCcceeEECCCCCEEEEcC-CCEEEEEeCCCc---eEeeee-c--------------CCcCCCcceEECCCCCEEEEECC
Confidence            5799999999999999999 889999998732   222211 0              12568999999999999999999


Q ss_pred             CCeEEEEcCCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceeeCC--CC
Q 010579          163 NMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNY--DD  239 (507)
Q Consensus       163 N~rIrk~d~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~~~--~~  239 (507)
                      +++|.+++... ......               ...+..|.+|+ ++.+|+|||+|..+++|.++++.+.......  ..
T Consensus       128 ~~~i~~~~~~~~~~~~~~---------------~~~~~~p~~i~-~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~  191 (270)
T 1rwi_B          128 NNRVVKLAAGSKTQTVLP---------------FTGLNDPDGVA-VDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDI  191 (270)
T ss_dssp             GTEEEEECTTCCSCEECC---------------CCSCCSCCCEE-ECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSC
T ss_pred             CCEEEEEECCCceeEeec---------------cccCCCceeEE-EeCCCCEEEEECCCCEEEEEecCCCceEeecccCC
Confidence            99999998654 222210               12356799998 5788899999999999999999887654432  22


Q ss_pred             CccceEEEEec-ceeEEe
Q 010579          240 TFHLGIFVLVA-AAFFGY  256 (507)
Q Consensus       240 G~p~gIa~~~~-a~~~gy  256 (507)
                      ..|.+|++... ..+++.
T Consensus       192 ~~p~~i~~d~~g~l~v~~  209 (270)
T 1rwi_B          192 TAPWGIAVDEAGTVYVTE  209 (270)
T ss_dssp             CSEEEEEECTTCCEEEEE
T ss_pred             CCceEEEECCCCCEEEEE
Confidence            45788888654 334443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.34  E-value=3.2e-10  Score=108.25  Aligned_cols=140  Identities=15%  Similarity=0.265  Sum_probs=104.4

Q ss_pred             CCCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeC
Q 010579           82 GMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT  161 (507)
Q Consensus        82 ~~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs  161 (507)
                      ...|.+|+++++|+|||++..+++|++++.+    +....+...              ..+..|.+|++|++|+|||++.
T Consensus       145 ~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~----g~~~~~~~~--------------~~~~~~~~i~~d~~g~l~v~~~  206 (300)
T 2qc5_A          145 GSYPAFITLGSDNALWFTENQNNSIGRITNT----GKLEEYPLP--------------TNAAAPVGITSGNDGALWFVEI  206 (300)
T ss_dssp             TCCEEEEEECTTSSEEEEETTTTEEEEECTT----CCEEEEECS--------------STTCCEEEEEECTTSSEEEEET
T ss_pred             CCCceeEEECCCCCEEEEecCCCeEEEECCC----CcEEEeeCC--------------CCCCCcceEEECCCCCEEEEcc
Confidence            4589999999999999999999999999985    444433211              1256899999999999999999


Q ss_pred             CCCeEEEEcCCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceeeC--CC
Q 010579          162 MNMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN--YD  238 (507)
Q Consensus       162 ~N~rIrk~d~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~~--~~  238 (507)
                      .+++|.+++.+| +..+..               ...+..|.+|+ .+.+|+|||++.++++|.++++.+....+.  ..
T Consensus       207 ~~~~i~~~~~~g~~~~~~~---------------~~~~~~~~~i~-~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~  270 (300)
T 2qc5_A          207 MGNKIGRITTTGEISEYDI---------------PTPNARPHAIT-AGKNSEIWFTEWGANQIGRITNDNTIQEYQLQTE  270 (300)
T ss_dssp             TTTEEEEECTTCCEEEEEC---------------SSTTCCEEEEE-ECSTTCEEEEETTTTEEEEECTTSCEEEEECCST
T ss_pred             CCCEEEEEcCCCcEEEEEC---------------CCCCCCceEEE-ECCCCCEEEeccCCCeEEEECCCCcEEEEECCcc
Confidence            999999999877 443321               01255789998 588899999999999999999865443332  22


Q ss_pred             CCccceEEEEec-ceeEE
Q 010579          239 DTFHLGIFVLVA-AAFFG  255 (507)
Q Consensus       239 ~G~p~gIa~~~~-a~~~g  255 (507)
                      ...|.+|++... ..+++
T Consensus       271 ~~~~~~i~~~~~g~l~v~  288 (300)
T 2qc5_A          271 NAEPHGITFGKDGSVWFA  288 (300)
T ss_dssp             TCCCCCEEECTTSCEEEE
T ss_pred             CCccceeEeCCCCCEEEE
Confidence            345778887643 33444

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.33  E-value=6.4e-12  Score=140.28  Aligned_cols=142  Identities=16%  Similarity=0.163  Sum_probs=106.9

Q ss_pred             CCeeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC-CCCEEEEe
Q 010579           83 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIAD  160 (507)
Q Consensus        83 ~~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~-dGnIYVAD  160 (507)
                      ..|.+|+||. .|+|||+|..+++|.++++++.   ...+++..               .+..|.||++|+ .|.||++|
T Consensus       453 ~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~---~~~~l~~~---------------~~~~P~giavDp~~g~ly~td  514 (699)
T 1n7d_A          453 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV---KRKTLFRE---------------QGSKPRAIVVDPVHGFMYWTD  514 (699)
T ss_dssp             --CCCEECCCSSSBCEECCTTTSCEEEEBSSSC---CEEEECCC---------------SSCCCCCEECCSSSSCCEECC
T ss_pred             CCcceEEEEeeCCcEEEEeccCCeEEEEecCCC---ceEEEEeC---------------CCCCcceEEEccCCCcEEEcc
Confidence            4799999995 7899999999999999998732   23333221               367899999998 57899999


Q ss_pred             CCC-CeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceeeC-
Q 010579          161 TMN-MAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN-  236 (507)
Q Consensus       161 s~N-~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~~-  236 (507)
                      .++ ++|.+++.+|  ..+++                ...|..|++|++....+.|||+|..+++|+++++++...... 
T Consensus       515 ~~~~~~I~~~~~dG~~~~~l~----------------~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~  578 (699)
T 1n7d_A          515 WGTPAKIKKGGLNGVDIYSLV----------------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL  578 (699)
T ss_dssp             CSSSCCEEBCCSSSCCCCEES----------------CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEEC
T ss_pred             cCCCCeEEEEeCCCCCeeEEE----------------eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEE
Confidence            876 8999999877  33332                124678999996546799999999999999999987543331 


Q ss_pred             ---CCCCccceEEEEecceeEEehh
Q 010579          237 ---YDDTFHLGIFVLVAAAFFGYML  258 (507)
Q Consensus       237 ---~~~G~p~gIa~~~~a~~~gy~~  258 (507)
                         ...+.|.+|++..+..|+.+..
T Consensus       579 ~~~~~~~~P~glavd~~~lywtd~~  603 (699)
T 1n7d_A          579 EDEKRLAHPFSLAVFEDKVFWTDII  603 (699)
T ss_dssp             CCSSSCSSCCCCEEETTEEEEECST
T ss_pred             ecCCcCCCceEeEEECCEEEEEeCC
Confidence               2235688999988777776643

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.29  E-value=1.1e-09  Score=104.40  Aligned_cols=141  Identities=11%  Similarity=0.165  Sum_probs=104.5

Q ss_pred             CCCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeC
Q 010579           82 GMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT  161 (507)
Q Consensus        82 ~~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs  161 (507)
                      +..|.+|+++++|+|||++..+++|.+++++    +.+..+...              ..+..|.+|++|++|+|||++.
T Consensus       103 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~----g~~~~~~~~--------------~~~~~~~~i~~d~~g~l~v~~~  164 (300)
T 2qc5_A          103 DSGPYGITEGLNGDIWFTQLNGDRIGKLTAD----GTIYEYDLP--------------NKGSYPAFITLGSDNALWFTEN  164 (300)
T ss_dssp             TCCEEEEEECSTTCEEEEETTTTEEEEECTT----SCEEEEECS--------------STTCCEEEEEECTTSSEEEEET
T ss_pred             CCCCccceECCCCCEEEEccCCCeEEEECCC----CCEEEccCC--------------CCCCCceeEEECCCCCEEEEec
Confidence            3579999999999999999988999999986    444433211              1245899999999999999999


Q ss_pred             CCCeEEEEcCCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceeeC--CC
Q 010579          162 MNMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN--YD  238 (507)
Q Consensus       162 ~N~rIrk~d~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~~--~~  238 (507)
                      .+++|.+++.++ +..+..               ...+..|.+|+ .+.+|+|||++..+++|.++++.+......  ..
T Consensus       165 ~~~~i~~~~~~g~~~~~~~---------------~~~~~~~~~i~-~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~  228 (300)
T 2qc5_A          165 QNNSIGRITNTGKLEEYPL---------------PTNAAAPVGIT-SGNDGALWFVEIMGNKIGRITTTGEISEYDIPTP  228 (300)
T ss_dssp             TTTEEEEECTTCCEEEEEC---------------SSTTCCEEEEE-ECTTSSEEEEETTTTEEEEECTTCCEEEEECSST
T ss_pred             CCCeEEEECCCCcEEEeeC---------------CCCCCCcceEE-ECCCCCEEEEccCCCEEEEEcCCCcEEEEECCCC
Confidence            999999999877 443321               01245789998 578899999999999999999855443332  22


Q ss_pred             CCccceEEEEec-ceeEEe
Q 010579          239 DTFHLGIFVLVA-AAFFGY  256 (507)
Q Consensus       239 ~G~p~gIa~~~~-a~~~gy  256 (507)
                      ...|.+|++... ..+++.
T Consensus       229 ~~~~~~i~~d~~g~l~v~~  247 (300)
T 2qc5_A          229 NARPHAITAGKNSEIWFTE  247 (300)
T ss_dssp             TCCEEEEEECSTTCEEEEE
T ss_pred             CCCceEEEECCCCCEEEec
Confidence            345778887643 344444

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.26  E-value=2.1e-09  Score=102.48  Aligned_cols=140  Identities=14%  Similarity=0.211  Sum_probs=102.1

Q ss_pred             CCCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeC
Q 010579           82 GMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT  161 (507)
Q Consensus        82 ~~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs  161 (507)
                      +..|.+|+++++|+|||++..++.|.+++.+    +.+..+...              ..+..|.+|++|++|+|||++.
T Consensus       140 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~----g~~~~~~~~--------------~~~~~~~~i~~~~~g~l~v~~~  201 (299)
T 2z2n_A          140 GSYPSFITLGSDNALWFTENQNNAIGRITES----GDITEFKIP--------------TPASGPVGITKGNDDALWFVEI  201 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT----CCEEEEECS--------------STTCCEEEEEECTTSSEEEEET
T ss_pred             CCCCceEEEcCCCCEEEEeCCCCEEEEEcCC----CcEEEeeCC--------------CCCCcceeEEECCCCCEEEEcc
Confidence            4579999999999999999988999999984    444443211              1246799999999999999999


Q ss_pred             CCCeEEEEcCCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceeeC--CC
Q 010579          162 MNMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN--YD  238 (507)
Q Consensus       162 ~N~rIrk~d~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~~--~~  238 (507)
                      .+++|.+++.++ +..+...               ..+..|.+|+ .+.+|+|||++..++.|.++++++....+.  ..
T Consensus       202 ~~~~i~~~~~~g~~~~~~~~---------------~~~~~~~~i~-~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~  265 (299)
T 2z2n_A          202 IGNKIGRITTSGEITEFKIP---------------TPNARPHAIT-AGAGIDLWFTEWGANKIGRLTSNNIIEEYPIQIK  265 (299)
T ss_dssp             TTTEEEEECTTCCEEEEECS---------------STTCCEEEEE-ECSTTCEEEEETTTTEEEEEETTTEEEEEECSSS
T ss_pred             CCceEEEECCCCcEEEEECC---------------CCCCCceeEE-ECCCCCEEEeccCCceEEEECCCCceEEEeCCCC
Confidence            999999999866 4433210               1245788998 588899999999999999999865333221  22


Q ss_pred             CCccceEEEEecceeEE
Q 010579          239 DTFHLGIFVLVAAAFFG  255 (507)
Q Consensus       239 ~G~p~gIa~~~~a~~~g  255 (507)
                      ...|.++++..+..+++
T Consensus       266 ~~~~~~i~~~~g~l~v~  282 (299)
T 2z2n_A          266 SAEPHGICFDGETIWFA  282 (299)
T ss_dssp             SCCEEEEEECSSCEEEE
T ss_pred             CCccceEEecCCCEEEE
Confidence            23567777622333444

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.26  E-value=3.1e-11  Score=134.68  Aligned_cols=115  Identities=21%  Similarity=0.257  Sum_probs=89.0

Q ss_pred             CCCeeEEEEcC-CCcEEEEeCCC-CeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCC-CCEEE
Q 010579           82 GMEPFSVAVSP-SGELLVLDSEN-SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDR-GNIYI  158 (507)
Q Consensus        82 ~~~P~gIaVd~-dG~LYVaDs~n-~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~d-GnIYV  158 (507)
                      +..|.+|+||+ .|.||++|..+ ++|.++++++..   ..+++ .              ..|..|+|||+|++ +.|||
T Consensus       495 ~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~---~~~l~-~--------------~~l~~PnGlavd~~~~~LY~  556 (699)
T 1n7d_A          495 GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IYSLV-T--------------ENIQWPNGITLDLLSGRLYW  556 (699)
T ss_dssp             SCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC---CCEES-C--------------SSCSSCCCEEECTTTCCEEE
T ss_pred             CCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC---eeEEE-e--------------CCCCCccEEEEeccCCEEEE
Confidence            35799999998 67899999876 899999987421   11221 1              14779999999975 77999


Q ss_pred             EeCCCCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCC
Q 010579          159 ADTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  230 (507)
Q Consensus       159 ADs~N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~  230 (507)
                      +|+.+++|.+++.+|  ..+++..              ...+..|.+|++ +. +.|||+|..+++|+++++.+
T Consensus       557 aD~~~~~I~~~d~dG~~~~~~~~~--------------~~~~~~P~glav-d~-~~lywtd~~~~~V~~~d~~~  614 (699)
T 1n7d_A          557 VDSKLHSISSIDVNGGNRKTILED--------------EKRLAHPFSLAV-FE-DKVFWTDIINEAIFSANRLT  614 (699)
T ss_dssp             EETTTTEEEEECSSSSCCEEECCC--------------SSSCSSCCCCEE-ET-TEEEEECSTTTCEEEEETTT
T ss_pred             EecCCCeEEEEccCCCceEEEEec--------------CCcCCCceEeEE-EC-CEEEEEeCCCCeEEEEEccC
Confidence            999999999999877  4555321              124678999985 44 49999999999999999753

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.22  E-value=1.1e-10  Score=115.73  Aligned_cols=134  Identities=13%  Similarity=0.101  Sum_probs=97.0

Q ss_pred             CCeeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC-CCCEEEEe
Q 010579           83 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIAD  160 (507)
Q Consensus        83 ~~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~-dGnIYVAD  160 (507)
                      ..|.+|++++ +|+|||+|.. +.|+++++.+   +.+..++...       ++    ..++.|++|++|+ +|+|||+|
T Consensus        80 ~~p~gi~~~~~~g~l~v~d~~-~~i~~~d~~~---g~~~~~~~~~-------~~----~~~~~p~~i~~d~~~G~l~v~d  144 (322)
T 2fp8_A           80 GRTYDISYNLQNNQLYIVDCY-YHLSVVGSEG---GHATQLATSV-------DG----VPFKWLYAVTVDQRTGIVYFTD  144 (322)
T ss_dssp             CCEEEEEEETTTTEEEEEETT-TEEEEECTTC---EECEEEESEE-------TT----EECSCEEEEEECTTTCCEEEEE
T ss_pred             CCCceEEEcCCCCcEEEEECC-CCEEEEeCCC---CEEEEecccC-------CC----CcccccceEEEecCCCEEEEEC
Confidence            3799999997 8999999986 5699999762   4455554321       11    2578899999999 99999999


Q ss_pred             CCC-----------------CeEEEEcCC-C-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCC-eEEEEeCCC
Q 010579          161 TMN-----------------MAIRKISDT-G-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGN  220 (507)
Q Consensus       161 s~N-----------------~rIrk~d~~-G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G-~LyVaD~gn  220 (507)
                      ..+                 ++|.+++.+ + +..+..                 .+..|++|++ ++++ .|||+|..+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-----------------~~~~p~gia~-~~dg~~lyv~d~~~  206 (322)
T 2fp8_A          145 VSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK-----------------ELHVPGGAEV-SADSSFVLVAEFLS  206 (322)
T ss_dssp             SCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE-----------------EESCCCEEEE-CTTSSEEEEEEGGG
T ss_pred             CcccccccccceehcccCCCceEEEEeCCCCEEEEecc-----------------CCccCcceEE-CCCCCEEEEEeCCC
Confidence            763                 578888865 4 443321                 2568999985 6665 599999999


Q ss_pred             CeEEEEECCCCc---e-eeCCCCCccceEEEEec
Q 010579          221 QAIREIQLHDDD---C-SDNYDDTFHLGIFVLVA  250 (507)
Q Consensus       221 ~rIr~I~l~~~~---~-~~~~~~G~p~gIa~~~~  250 (507)
                      ++|+++++++..   . ......| |.+|+++..
T Consensus       207 ~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~  239 (322)
T 2fp8_A          207 HQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNAD  239 (322)
T ss_dssp             TEEEEEESSSTTTTCEEEEEECSS-EEEEEECTT
T ss_pred             CeEEEEECCCCcCCccceEEeCCC-CCCeEECCC
Confidence            999999988632   1 1111234 888877654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.21  E-value=4.5e-09  Score=100.18  Aligned_cols=141  Identities=13%  Similarity=0.215  Sum_probs=103.2

Q ss_pred             CCCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeC
Q 010579           82 GMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT  161 (507)
Q Consensus        82 ~~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs  161 (507)
                      ...|.+|+++++|.|||++..+++|.+++++    +....+...              .....|.+|++|++|+|||++.
T Consensus        98 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~----g~~~~~~~~--------------~~~~~~~~i~~~~~g~l~v~~~  159 (299)
T 2z2n_A           98 DSAPYGITEGPNGDIWFTEMNGNRIGRITDD----GKIREYELP--------------NKGSYPSFITLGSDNALWFTEN  159 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT----CCEEEEECS--------------STTCCEEEEEECTTSCEEEEET
T ss_pred             CCCceeeEECCCCCEEEEecCCceEEEECCC----CCEEEecCC--------------CCCCCCceEEEcCCCCEEEEeC
Confidence            4589999999999999999989999999985    444443221              1245799999999999999999


Q ss_pred             CCCeEEEEcCCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee--CCC
Q 010579          162 MNMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD--NYD  238 (507)
Q Consensus       162 ~N~rIrk~d~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~--~~~  238 (507)
                      .++.|.+++.+| +..+...               ..+..|.+|+ .+.+|.|||++..++.|.++++.+....+  ...
T Consensus       160 ~~~~i~~~~~~g~~~~~~~~---------------~~~~~~~~i~-~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~  223 (299)
T 2z2n_A          160 QNNAIGRITESGDITEFKIP---------------TPASGPVGIT-KGNDDALWFVEIIGNKIGRITTSGEITEFKIPTP  223 (299)
T ss_dssp             TTTEEEEECTTCCEEEEECS---------------STTCCEEEEE-ECTTSSEEEEETTTTEEEEECTTCCEEEEECSST
T ss_pred             CCCEEEEEcCCCcEEEeeCC---------------CCCCcceeEE-ECCCCCEEEEccCCceEEEECCCCcEEEEECCCC
Confidence            999999999876 4443210               1245788998 57889999999999999999994433322  112


Q ss_pred             CCccceEEEEec-ceeEEe
Q 010579          239 DTFHLGIFVLVA-AAFFGY  256 (507)
Q Consensus       239 ~G~p~gIa~~~~-a~~~gy  256 (507)
                      ...|.+|++... ..+++.
T Consensus       224 ~~~~~~i~~~~~g~l~v~~  242 (299)
T 2z2n_A          224 NARPHAITAGAGIDLWFTE  242 (299)
T ss_dssp             TCCEEEEEECSTTCEEEEE
T ss_pred             CCCceeEEECCCCCEEEec
Confidence            345777877643 344443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.21  E-value=6.1e-10  Score=110.45  Aligned_cols=117  Identities=11%  Similarity=0.072  Sum_probs=87.1

Q ss_pred             CCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeC
Q 010579           83 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT  161 (507)
Q Consensus        83 ~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs  161 (507)
                      ..|.+|+++++|+ |||+|..+++|++++.++...+...++..                 +..|.||++|++|+||||+.
T Consensus       185 ~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-----------------~~gP~gi~~d~~G~l~va~~  247 (322)
T 2fp8_A          185 HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-----------------IPNPGNIKRNADGHFWVSSS  247 (322)
T ss_dssp             SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-----------------CSSEEEEEECTTSCEEEEEE
T ss_pred             ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-----------------CCCCCCeEECCCCCEEEEec
Confidence            4799999999986 99999999999999987433233333221                 11299999999999999997


Q ss_pred             C----------CCeEEEEcCCC-c-EEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECC
Q 010579          162 M----------NMAIRKISDTG-V-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH  229 (507)
Q Consensus       162 ~----------N~rIrk~d~~G-V-stIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~  229 (507)
                      .          +++|.+|+.+| + ..+.. .        ++    ..+..|.+++.  .++.|||++..+++|.+++++
T Consensus       248 ~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~-~--------~g----~~~~~~~~~~~--~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          248 EELDGNMHGRVDPKGIKFDEFGNILEVIPL-P--------PP----FAGEHFEQIQE--HDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             EETTSSTTSCEEEEEEEECTTSCEEEEEEC-C--------TT----TTTSCCCEEEE--ETTEEEEECSSCSEEEEEEC-
T ss_pred             CcccccccCCCccEEEEECCCCCEEEEEEC-C--------CC----CccccceEEEE--eCCEEEEeecCCCceEEEecc
Confidence            6          67899999888 3 33321 1        11    12667888874  578999999999999999986


Q ss_pred             CC
Q 010579          230 DD  231 (507)
Q Consensus       230 ~~  231 (507)
                      ..
T Consensus       313 ~~  314 (322)
T 2fp8_A          313 KK  314 (322)
T ss_dssp             --
T ss_pred             cc
Confidence            43

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.16  E-value=4.1e-09  Score=102.29  Aligned_cols=136  Identities=15%  Similarity=0.201  Sum_probs=99.6

Q ss_pred             CCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           83 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      ..|.+|+++++|+|||++..+++|.+++..   .+++..+....       .    ...++.|++|++|++|+|||+|..
T Consensus        69 ~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~---~g~~~~~~~~~-------~----~~~~~~~~~i~~d~~G~l~vtd~~  134 (296)
T 3e5z_A           69 HHQNGHCLNKQGHLIACSHGLRRLERQREP---GGEWESIADSF-------E----GKKLNSPNDVCLAPDGSLWFSDPT  134 (296)
T ss_dssp             SSEEEEEECTTCCEEEEETTTTEEEEECST---TCCEEEEECEE-------T----TEECCCCCCEEECTTSCEEEEECS
T ss_pred             CCcceeeECCCCcEEEEecCCCeEEEEcCC---CCcEEEEeecc-------C----CCCCCCCCCEEECCCCCEEEECCc
Confidence            369999999999999999998999999984   25555554321       0    124678999999999999999862


Q ss_pred             -----------------CCeEEEEcCCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEE
Q 010579          163 -----------------NMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIR  224 (507)
Q Consensus       163 -----------------N~rIrk~d~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr  224 (507)
                                       ..+|.+++.+| +..+..                 .+..|++|++ +++++++|+|..+++|+
T Consensus       135 ~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~-----------------~~~~~~gi~~-s~dg~~lv~~~~~~~i~  196 (296)
T 3e5z_A          135 YGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIR-----------------DRVKPNGLAF-LPSGNLLVSDTGDNATH  196 (296)
T ss_dssp             HHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEEC-----------------CCSSEEEEEE-CTTSCEEEEETTTTEEE
T ss_pred             cccccccccccccccCCCcEEEEECCCCCEEEeec-----------------CCCCCccEEE-CCCCCEEEEeCCCCeEE
Confidence                             45899999777 444432                 2456889985 77777669999999999


Q ss_pred             EEECCC-Cce-----eeCCCCCccceEEEEec
Q 010579          225 EIQLHD-DDC-----SDNYDDTFHLGIFVLVA  250 (507)
Q Consensus       225 ~I~l~~-~~~-----~~~~~~G~p~gIa~~~~  250 (507)
                      ++++.. +.+     ......+.|.+|+++..
T Consensus       197 ~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~  228 (296)
T 3e5z_A          197 RYCLNARGETEYQGVHFTVEPGKTDGLRVDAG  228 (296)
T ss_dssp             EEEECSSSCEEEEEEEECCSSSCCCSEEEBTT
T ss_pred             EEEECCCCcCcCCCeEeeCCCCCCCeEEECCC
Confidence            999862 222     11223456788887654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.16  E-value=9.3e-10  Score=108.88  Aligned_cols=113  Identities=19%  Similarity=0.162  Sum_probs=86.5

Q ss_pred             CCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           83 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      ..|.+|+++++|+|||+|..+++|++++++    +....++..+                ..|.+|+++++|+|||||..
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~----g~~~~~~~~~----------------~~p~gia~~~dG~l~vad~~   91 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPD----GNQQIHATVE----------------GKVSGLAFTSNGDLVATGWN   91 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT----CCEEEEEECS----------------SEEEEEEECTTSCEEEEEEC
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCC----CceEEEEeCC----------------CCceeEEEcCCCcEEEEecc
Confidence            379999999999999999999999999987    3344443221                25999999999999999987


Q ss_pred             CC--eEEEEc-CCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 010579          163 NM--AIRKIS-DTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD  231 (507)
Q Consensus       163 N~--rIrk~d-~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~  231 (507)
                      ++  +|.+++ .+| +..++...               ....|.+++ +..++.+||+|..+++|+++++.+.
T Consensus        92 ~~~~~v~~~d~~~g~~~~~~~~~---------------~~~~~~g~~-~~~~~~~~v~d~~~g~i~~~d~~~~  148 (306)
T 2p4o_A           92 ADSIPVVSLVKSDGTVETLLTLP---------------DAIFLNGIT-PLSDTQYLTADSYRGAIWLIDVVQP  148 (306)
T ss_dssp             TTSCEEEEEECTTSCEEEEEECT---------------TCSCEEEEE-ESSSSEEEEEETTTTEEEEEETTTT
T ss_pred             CCcceEEEEcCCCCeEEEEEeCC---------------CccccCccc-ccCCCcEEEEECCCCeEEEEeCCCC
Confidence            54  588887 455 65554311               123467777 4678889999999999999998753

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.16  E-value=6.9e-09  Score=102.62  Aligned_cols=140  Identities=12%  Similarity=0.026  Sum_probs=97.3

Q ss_pred             CeeEEEEcCCCcEEEEeCCCC--eEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeC
Q 010579           84 EPFSVAVSPSGELLVLDSENS--NIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT  161 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~--rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs  161 (507)
                      .|.+|+++++|+|||+|..++  +|++++..   .+.+..++...              ....|.|+++.+++.+||+|.
T Consensus        73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~---~g~~~~~~~~~--------------~~~~~~g~~~~~~~~~~v~d~  135 (306)
T 2p4o_A           73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKS---DGTVETLLTLP--------------DAIFLNGITPLSDTQYLTADS  135 (306)
T ss_dssp             EEEEEEECTTSCEEEEEECTTSCEEEEEECT---TSCEEEEEECT--------------TCSCEEEEEESSSSEEEEEET
T ss_pred             CceeEEEcCCCcEEEEeccCCcceEEEEcCC---CCeEEEEEeCC--------------CccccCcccccCCCcEEEEEC
Confidence            699999999999999997654  59998865   36666665432              134578999988888999999


Q ss_pred             CCCeEEEEcCCC----cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCC-cee--
Q 010579          162 MNMAIRKISDTG----VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD-DCS--  234 (507)
Q Consensus       162 ~N~rIrk~d~~G----VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~-~~~--  234 (507)
                      .+++|++++.++    +....+.  .. .     ......|..|++|  ..+.+.|||+|+.+++|++|+++.. ...  
T Consensus       136 ~~g~i~~~d~~~~~~~v~~~~~~--~~-~-----~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~  205 (306)
T 2p4o_A          136 YRGAIWLIDVVQPSGSIWLEHPM--LA-R-----SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEP  205 (306)
T ss_dssp             TTTEEEEEETTTTEEEEEEECGG--GS-C-----SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCC
T ss_pred             CCCeEEEEeCCCCcEeEEEECCc--cc-c-----ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCcc
Confidence            999999999753    2222211  00 0     0112346789998  3456799999999999999998752 111  


Q ss_pred             -eCCCCCccceEEEEec
Q 010579          235 -DNYDDTFHLGIFVLVA  250 (507)
Q Consensus       235 -~~~~~G~p~gIa~~~~  250 (507)
                       .......|.+|+++..
T Consensus       206 ~~~~~~~~P~gi~vd~d  222 (306)
T 2p4o_A          206 EIFVEQTNIDDFAFDVE  222 (306)
T ss_dssp             EEEEESCCCSSEEEBTT
T ss_pred             EEEeccCCCCCeEECCC
Confidence             1111246888988864

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.14  E-value=1e-09  Score=112.15  Aligned_cols=163  Identities=10%  Similarity=0.065  Sum_probs=96.2

Q ss_pred             CCeeEEEEcCC----CcEEEEeCCC-----CeEEEEeCCCCCCCccEEEec-CCCCccccCCCCcccccCCCcceEEEcC
Q 010579           83 MEPFSVAVSPS----GELLVLDSEN-----SNIYKISTSLSPYSRPKLVAG-SPEGYYGHVDGRPRGARMNHPKGLAVDD  152 (507)
Q Consensus        83 ~~P~gIaVd~d----G~LYVaDs~n-----~rI~ki~~~g~~~g~i~~vaG-~~~G~~G~~dG~~~~a~fn~P~GIaVd~  152 (507)
                      ..|.+|+++++    |.|||++..+     ++|.+++.++.......+++. .+.          .......|.+|++++
T Consensus        75 ~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~----------~~~~~h~~~~l~~~p  144 (352)
T 2ism_A           75 SGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPA----------RPHGLHSGGRIAFGP  144 (352)
T ss_dssp             CSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECC----------CTTCCCCCCCEEECT
T ss_pred             CCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCC----------CCCCCcCCceEEECC
Confidence            57999999997    8899999865     799999976321112222221 110          011346788999999


Q ss_pred             CCCEEEEeCC-------------CCeEEEEcCCCcEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCC
Q 010579          153 RGNIYIADTM-------------NMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG  219 (507)
Q Consensus       153 dGnIYVADs~-------------N~rIrk~d~~GVstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~g  219 (507)
                      ||+|||++..             +.+|.+|+.+|-  +..+....+........-...+.+|++|++.+.++.|||+|.+
T Consensus       145 dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~--~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g  222 (352)
T 2ism_A          145 DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGE--PAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHG  222 (352)
T ss_dssp             TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSS--BCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEEC
T ss_pred             CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCC--CCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcC
Confidence            9999999742             358999998771  1111000000000001111236789999964448999999999


Q ss_pred             CCe--------EEEEECCCCc----ee-------------eCCCCCccceEEEEecceeEEeh
Q 010579          220 NQA--------IREIQLHDDD----CS-------------DNYDDTFHLGIFVLVAAAFFGYM  257 (507)
Q Consensus       220 n~r--------Ir~I~l~~~~----~~-------------~~~~~G~p~gIa~~~~a~~~gy~  257 (507)
                      +++        |.+|...++.    |.             .......|.|+++..+..|++..
T Consensus       223 ~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~~~G~l~v~~~  285 (352)
T 2ism_A          223 PSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAFFRGDLYVAGL  285 (352)
T ss_dssp             C------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEEETTEEEEEET
T ss_pred             CCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCCCCCcceEEECCEEEEEEC
Confidence            887        6666543210    00             01112347788887666666553

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.09  E-value=4.4e-09  Score=103.22  Aligned_cols=134  Identities=12%  Similarity=0.080  Sum_probs=95.6

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC-
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM-  162 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~-  162 (507)
                      .|.+|+++++|+|||+.  .++|++++..   .+.+..++....       +    ..++.|++|++|++|+|||++.. 
T Consensus        55 ~~~~i~~~~dG~l~v~~--~~~l~~~d~~---~g~~~~~~~~~~-------~----~~~~~~~di~~d~dG~l~~~~~~~  118 (297)
T 3g4e_A           55 PVSSVALRQSGGYVATI--GTKFCALNWK---EQSAVVLATVDN-------D----KKNNRFNDGKVDPAGRYFAGTMAE  118 (297)
T ss_dssp             CEEEEEEBTTSSEEEEE--TTEEEEEETT---TTEEEEEEECCT-------T----CSSEEEEEEEECTTSCEEEEEEEC
T ss_pred             ceEEEEECCCCCEEEEE--CCeEEEEECC---CCcEEEEEecCC-------C----CCCCCCCCEEECCCCCEEEecCCc
Confidence            68999999999999997  5799999987   356665553321       1    13567999999999999999843 


Q ss_pred             ----------CCeEEEEcCCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECC--
Q 010579          163 ----------NMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH--  229 (507)
Q Consensus       163 ----------N~rIrk~d~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~--  229 (507)
                                ..+|.+++.+| +..+..                 .+..|++|++.++...|||+|+.+++|++++.+  
T Consensus       119 ~~~~~~~~~~~~~l~~~d~~g~~~~~~~-----------------~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~  181 (297)
T 3g4e_A          119 ETAPAVLERHQGALYSLFPDHHVKKYFD-----------------QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQ  181 (297)
T ss_dssp             CSBTTBCCTTCEEEEEECTTSCEEEEEE-----------------EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTT
T ss_pred             ccccccccCCCcEEEEEECCCCEEEEee-----------------ccccccceEEcCCCCEEEEecCCCCcEEEEeccCC
Confidence                      35799999877 444321                 245688999644444699999999999999874  


Q ss_pred             CCcee-------eCCCCCccceEEEEec
Q 010579          230 DDDCS-------DNYDDTFHLGIFVLVA  250 (507)
Q Consensus       230 ~~~~~-------~~~~~G~p~gIa~~~~  250 (507)
                      .....       .....+.|.+++++..
T Consensus       182 ~G~~~~~~~~~~~~~~~~~p~g~~~d~~  209 (297)
T 3g4e_A          182 TGQISNRRSVYKLEKEEQIPDGMCIDAE  209 (297)
T ss_dssp             TCCEEEEEEEEECCGGGCEEEEEEEBTT
T ss_pred             CCcccCcEEEEECCCCCCCCCeeEECCC
Confidence            22221       1122357888888654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.08  E-value=8.5e-09  Score=101.40  Aligned_cols=136  Identities=17%  Similarity=0.246  Sum_probs=99.1

Q ss_pred             CCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           83 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      ..|.+++++++|+||+++..+++|.+++.+    +.+..++...       .+    ..++.|++|++|++|+|||+|..
T Consensus        86 ~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~----g~~~~~~~~~-------~~----~~~~~~~~i~~d~dG~l~~td~~  150 (305)
T 3dr2_A           86 AFTNGNAVDAQQRLVHCEHGRRAITRSDAD----GQAHLLVGRY-------AG----KRLNSPNDLIVARDGAIWFTDPP  150 (305)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECTT----SCEEEEECEE-------TT----EECSCCCCEEECTTSCEEEECCS
T ss_pred             CccceeeECCCCCEEEEECCCCEEEEECCC----CCEEEEEecc-------CC----CccCCCCCEEECCCCCEEEeCcC
Confidence            369999999999999999998999999986    5555554321       11    24788999999999999999851


Q ss_pred             -----------------CCeEEEEcC-CC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCC-eEEEEeCCC--
Q 010579          163 -----------------NMAIRKISD-TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGN--  220 (507)
Q Consensus       163 -----------------N~rIrk~d~-~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G-~LyVaD~gn--  220 (507)
                                       ...|.+++. .| +..+.                  .+..|+++++ ++++ .|||+|+.+  
T Consensus       151 ~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~------------------~~~~p~gl~~-spdg~~lyv~~~~~~~  211 (305)
T 3dr2_A          151 FGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA------------------DLDHPNGLAF-SPDEQTLYVSQTPEQG  211 (305)
T ss_dssp             GGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE------------------EESSEEEEEE-CTTSSEEEEEECCC--
T ss_pred             CCccccccccccccccCCCeEEEEcCCCCcEEEEe------------------cCCCCcceEE-cCCCCEEEEEecCCcC
Confidence                             357899986 44 55442                  1347889986 5555 599999974  


Q ss_pred             ---CeEEEEECCCCcee-----eCCCCCccceEEEEecce
Q 010579          221 ---QAIREIQLHDDDCS-----DNYDDTFHLGIFVLVAAA  252 (507)
Q Consensus       221 ---~rIr~I~l~~~~~~-----~~~~~G~p~gIa~~~~a~  252 (507)
                         ++|++++++.+...     .....+.|.+|+++....
T Consensus       212 ~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~  251 (305)
T 3dr2_A          212 HGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW  251 (305)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC
T ss_pred             CCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC
Confidence               89999998754311     122356788888775433

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.06  E-value=5e-09  Score=101.64  Aligned_cols=136  Identities=14%  Similarity=0.125  Sum_probs=101.9

Q ss_pred             CCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeC
Q 010579           83 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT  161 (507)
Q Consensus        83 ~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs  161 (507)
                      ..|.+++++++|+ ||++|..+++|+++++.+   + ...+...                ...|.+|+++++|+|||++.
T Consensus        28 ~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~---~-~~~~~~~----------------~~~~~~l~~~~dg~l~v~~~   87 (296)
T 3e5z_A           28 TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDG---Q-LSPEMHP----------------SHHQNGHCLNKQGHLIACSH   87 (296)
T ss_dssp             SSEEEEEEEGGGTEEEEEEGGGTEEEEEETTS---C-EEEEESS----------------CSSEEEEEECTTCCEEEEET
T ss_pred             ccccCCeEeCCCCEEEEEeCCCCEEEEEECCC---C-eEEEECC----------------CCCcceeeECCCCcEEEEec
Confidence            4699999999998 999999999999999873   3 4444321                24689999999999999999


Q ss_pred             CCCeEEEEcC-CC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeC-----------------CCCe
Q 010579          162 MNMAIRKISD-TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR-----------------GNQA  222 (507)
Q Consensus       162 ~N~rIrk~d~-~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~-----------------gn~r  222 (507)
                      .+++|.+++. +| +..+....            ....++.|++|+ ++++|+|||+|.                 ..++
T Consensus        88 ~~~~i~~~d~~~g~~~~~~~~~------------~~~~~~~~~~i~-~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~  154 (296)
T 3e5z_A           88 GLRRLERQREPGGEWESIADSF------------EGKKLNSPNDVC-LAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRW  154 (296)
T ss_dssp             TTTEEEEECSTTCCEEEEECEE------------TTEECCCCCCEE-ECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCE
T ss_pred             CCCeEEEEcCCCCcEEEEeecc------------CCCCCCCCCCEE-ECCCCCEEEECCccccccccccccccccCCCcE
Confidence            9999999996 66 55443211            112356789998 588999999976                 2468


Q ss_pred             EEEEECCCCceeeCCCCCccceEEEEecc
Q 010579          223 IREIQLHDDDCSDNYDDTFHLGIFVLVAA  251 (507)
Q Consensus       223 Ir~I~l~~~~~~~~~~~G~p~gIa~~~~a  251 (507)
                      |+++++.+...........|.+|++....
T Consensus       155 l~~~~~~g~~~~~~~~~~~~~gi~~s~dg  183 (296)
T 3e5z_A          155 VFRLAPDGTLSAPIRDRVKPNGLAFLPSG  183 (296)
T ss_dssp             EEEECTTSCEEEEECCCSSEEEEEECTTS
T ss_pred             EEEECCCCCEEEeecCCCCCccEEECCCC
Confidence            99999874433334455678888886543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.02  E-value=1.2e-08  Score=100.24  Aligned_cols=131  Identities=10%  Similarity=0.078  Sum_probs=93.4

Q ss_pred             CCeeEEEEcCCCcEEEEeC-----------CCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEc
Q 010579           83 MEPFSVAVSPSGELLVLDS-----------ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVD  151 (507)
Q Consensus        83 ~~P~gIaVd~dG~LYVaDs-----------~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd  151 (507)
                      ..|+++++|++|+|||++.           ..++|++++.+    +.+..+..                .+..|+||+++
T Consensus        98 ~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~----g~~~~~~~----------------~~~~pngi~~s  157 (297)
T 3g4e_A           98 NRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD----HHVKKYFD----------------QVDISNGLDWS  157 (297)
T ss_dssp             EEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT----SCEEEEEE----------------EESBEEEEEEC
T ss_pred             CCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC----CCEEEEee----------------ccccccceEEc
Confidence            5689999999999999984           34689999876    44443332                25679999999


Q ss_pred             CCCC-EEEEeCCCCeEEEEc---CCC-cE---EEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeE
Q 010579          152 DRGN-IYIADTMNMAIRKIS---DTG-VT---TIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAI  223 (507)
Q Consensus       152 ~dGn-IYVADs~N~rIrk~d---~~G-Vs---tIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rI  223 (507)
                      ++|+ |||+|+.+++|.+++   .+| +.   .++...              .....|.+|+ +|.+|+|||++.++++|
T Consensus       158 pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~--------------~~~~~p~g~~-~d~~G~lwva~~~~~~v  222 (297)
T 3g4e_A          158 LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLE--------------KEEQIPDGMC-IDAEGKLWVACYNGGRV  222 (297)
T ss_dssp             TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECC--------------GGGCEEEEEE-EBTTSCEEEEEETTTEE
T ss_pred             CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECC--------------CCCCCCCeeE-ECCCCCEEEEEcCCCEE
Confidence            9997 999999999999997   344 21   121100              0123688998 58899999999999999


Q ss_pred             EEEECCCCceee-C-CCCCccceEEEE
Q 010579          224 REIQLHDDDCSD-N-YDDTFHLGIFVL  248 (507)
Q Consensus       224 r~I~l~~~~~~~-~-~~~G~p~gIa~~  248 (507)
                      .+++++++.+.. . .....|+++++.
T Consensus       223 ~~~d~~tG~~~~~i~~p~~~~t~~~f~  249 (297)
T 3g4e_A          223 IRLDPVTGKRLQTVKLPVDKTTSCCFG  249 (297)
T ss_dssp             EEECTTTCCEEEEEECSSSBEEEEEEE
T ss_pred             EEEcCCCceEEEEEECCCCCceEEEEe
Confidence            999998544332 2 222356666664

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.00  E-value=1.3e-08  Score=101.68  Aligned_cols=134  Identities=8%  Similarity=0.134  Sum_probs=91.0

Q ss_pred             CCeeEEEEcCCCcEEEEeCCC----------CeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC
Q 010579           83 MEPFSVAVSPSGELLVLDSEN----------SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD  152 (507)
Q Consensus        83 ~~P~gIaVd~dG~LYVaDs~n----------~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~  152 (507)
                      ..|.+|+++++|+|||++..+          ++|.+|++.+   +++......+       .|       ..|.+|++++
T Consensus       172 ~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t---~~v~~~~~~~-------~g-------~~p~~la~~~  234 (328)
T 3dsm_A          172 IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAET---FTVEKQFKFK-------LG-------DWPSEVQLNG  234 (328)
T ss_dssp             SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTT---TEEEEEEECC-------TT-------CCCEEEEECT
T ss_pred             CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCC---CeEEEEEecC-------CC-------CCceeEEEec
Confidence            369999999999999999876          8999999862   4443222211       01       3799999999


Q ss_pred             CCC-EEEEeCCCCeEEEEcCCCcEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEe----CCCCeEEEEE
Q 010579          153 RGN-IYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVID----RGNQAIREIQ  227 (507)
Q Consensus       153 dGn-IYVADs~N~rIrk~d~~GVstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD----~gn~rIr~I~  227 (507)
                      +|. |||++.   .|.++|...-.... ..    .  ..     .....|.+|++.+.++.|||++    ..+++|.+|+
T Consensus       235 d~~~lyv~~~---~v~~~d~~t~~~~~-~~----~--~~-----~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d  299 (328)
T 3dsm_A          235 TRDTLYWINN---DIWRMPVEADRVPV-RP----F--LE-----FRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS  299 (328)
T ss_dssp             TSCEEEEESS---SEEEEETTCSSCCS-SC----S--BC-----CCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred             CCCEEEEEcc---EEEEEECCCCceee-ee----e--ec-----CCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence            765 999986   79999964411110 00    0  00     0145799998644589999999    8899999999


Q ss_pred             CCCCceeeCCCCCccceEEEE
Q 010579          228 LHDDDCSDNYDDTFHLGIFVL  248 (507)
Q Consensus       228 l~~~~~~~~~~~G~p~gIa~~  248 (507)
                      +++...........|.+|+.-
T Consensus       300 ~~g~~~~~i~~G~~P~~~~~~  320 (328)
T 3dsm_A          300 PQGKLIDEFYVGIIPGAFCWK  320 (328)
T ss_dssp             TTCCEEEEEEEEESEEEEEEE
T ss_pred             CCCCEEEEEEeccCcceEEEe
Confidence            985444332222346666654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.00  E-value=7.9e-09  Score=101.63  Aligned_cols=134  Identities=12%  Similarity=0.102  Sum_probs=100.4

Q ss_pred             CeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           84 EPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      .+.+++++++|+ ||++|..+++|++++.+    +....+...                -..|+++++|++|+|||++..
T Consensus        46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~~----g~~~~~~~~----------------~~~~~gl~~d~dG~l~v~~~~  105 (305)
T 3dr2_A           46 WSEGPAWWEAQRTLVWSDLVGRRVLGWRED----GTVDVLLDA----------------TAFTNGNAVDAQQRLVHCEHG  105 (305)
T ss_dssp             SEEEEEEEGGGTEEEEEETTTTEEEEEETT----SCEEEEEES----------------CSCEEEEEECTTSCEEEEETT
T ss_pred             CccCCeEeCCCCEEEEEECCCCEEEEEeCC----CCEEEEeCC----------------CCccceeeECCCCCEEEEECC
Confidence            688999999987 99999999999999886    444444321                136899999999999999999


Q ss_pred             CCeEEEEcCCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeC-----------------CCCeEE
Q 010579          163 NMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR-----------------GNQAIR  224 (507)
Q Consensus       163 N~rIrk~d~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~-----------------gn~rIr  224 (507)
                      +++|.+++.+| +++++....            ...++.|++|+ ++++|+|||+|.                 ..+.|.
T Consensus       106 ~~~v~~~~~~g~~~~~~~~~~------------~~~~~~~~~i~-~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~  172 (305)
T 3dr2_A          106 RRAITRSDADGQAHLLVGRYA------------GKRLNSPNDLI-VARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVY  172 (305)
T ss_dssp             TTEEEEECTTSCEEEEECEET------------TEECSCCCCEE-ECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEE
T ss_pred             CCEEEEECCCCCEEEEEeccC------------CCccCCCCCEE-ECCCCCEEEeCcCCCccccccccccccccCCCeEE
Confidence            99999999778 555543211            12467899998 588999999984                 246899


Q ss_pred             EEECCCCceeeCCCCCccceEEEEec
Q 010579          225 EIQLHDDDCSDNYDDTFHLGIFVLVA  250 (507)
Q Consensus       225 ~I~l~~~~~~~~~~~G~p~gIa~~~~  250 (507)
                      ++++.++.+........|+++++...
T Consensus       173 ~~d~~~g~~~~~~~~~~p~gl~~spd  198 (305)
T 3dr2_A          173 RLPPDGSPLQRMADLDHPNGLAFSPD  198 (305)
T ss_dssp             EECSSSCCCEEEEEESSEEEEEECTT
T ss_pred             EEcCCCCcEEEEecCCCCcceEEcCC
Confidence            99986544332113446788887654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.97  E-value=5.9e-08  Score=96.99  Aligned_cols=161  Identities=11%  Similarity=0.085  Sum_probs=110.1

Q ss_pred             EEecCCcEEEEEeCCCCeEEecCcceEeeCCeeeEEeecCCCCCCCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCc
Q 010579           39 VVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSR  118 (507)
Q Consensus        39 va~ag~~~I~~~d~~t~~i~aG~~~~~~~~G~~~~~~~~G~~~~~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~  118 (507)
                      ++....+.|.++|..+++..              ... .   .+..|.+|+++++|.|||++...++|.+|++.+   ++
T Consensus        58 v~~~~~~~v~viD~~t~~~~--------------~~i-~---~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t---~~  116 (328)
T 3dsm_A           58 IVVNNSHVIFAIDINTFKEV--------------GRI-T---GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT---YE  116 (328)
T ss_dssp             EEEGGGTEEEEEETTTCCEE--------------EEE-E---CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTT---TE
T ss_pred             EEEcCCCEEEEEECcccEEE--------------EEc-C---CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCC---Ce
Confidence            44445566666676665543              111 1   124799999988899999997789999999872   44


Q ss_pred             cEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC-CCeEEEEcCCC---cEEEecCcccCCCCCCCCCcc
Q 010579          119 PKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM-NMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSE  194 (507)
Q Consensus       119 i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~-N~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~  194 (507)
                      +...+..+.          ...++..|.+|++ .++.|||++.+ .++|.+||...   +.++..+              
T Consensus       117 ~~~~i~~g~----------~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g--------------  171 (328)
T 3dsm_A          117 ITGYIECPD----------MDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG--------------  171 (328)
T ss_dssp             EEEEEECTT----------CCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS--------------
T ss_pred             EEEEEEcCC----------ccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC--------------
Confidence            432222110          0123568999999 57889999984 88999999653   3344211              


Q ss_pred             CccCCCCceEEEEcCCCeEEEEeCCC----------CeEEEEECCCCceee--CCC-CCccceEEEEec
Q 010579          195 DAKFSNDFDVVYVGSSCSLLVIDRGN----------QAIREIQLHDDDCSD--NYD-DTFHLGIFVLVA  250 (507)
Q Consensus       195 ~a~f~~P~gIa~vd~~G~LyVaD~gn----------~rIr~I~l~~~~~~~--~~~-~G~p~gIa~~~~  250 (507)
                          ..|.+|+ .+.+|+|||++.++          +.|.+|++.+..+..  ... ...|.++++...
T Consensus       172 ----~~p~~i~-~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d  235 (328)
T 3dsm_A          172 ----IQPTSLV-MDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGT  235 (328)
T ss_dssp             ----SCBCCCE-ECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTT
T ss_pred             ----CCccceE-EcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecC
Confidence                2578887 58899999999986          899999998766542  111 236889998853

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.90  E-value=3.4e-08  Score=100.89  Aligned_cols=148  Identities=16%  Similarity=0.155  Sum_probs=97.9

Q ss_pred             CCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCC----CCEEE
Q 010579           83 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDR----GNIYI  158 (507)
Q Consensus        83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~d----GnIYV  158 (507)
                      ..|.+|+++++|+|||+|.. ++|++++ +    +....++.....          ...+..|.||+++++    |.|||
T Consensus        31 ~~P~~ia~~pdG~l~V~e~~-g~I~~i~-~----g~~~~~~~~~v~----------~~g~~~p~gia~~pdf~~~g~lYv   94 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIAERP-GRIRLFR-E----GRLSTYAELSVY----------HRGESGLLGLALHPRFPQEPYVYA   94 (352)
T ss_dssp             SCEEEEEECTTSCEEEEETT-TEEEEEE-T----TEEEEEEECCCC----------CSTTCSEEEEEECTTTTTSCEEEE
T ss_pred             CCceEEEEcCCCeEEEEeCC-CeEEEEE-C----CCccEeecceEe----------ecCCCCceeEEECCCCCCCCEEEE
Confidence            47999999999999999986 8999998 5    444555433200          112568999999997    78999


Q ss_pred             EeCCC-----CeEEEEcCCC--c---EEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeC----------
Q 010579          159 ADTMN-----MAIRKISDTG--V---TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR----------  218 (507)
Q Consensus       159 ADs~N-----~rIrk~d~~G--V---stIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~----------  218 (507)
                      +++.+     ++|.+++.++  +   .++..+.          +........|.+|+ ++++|.|||++.          
T Consensus        95 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~----------p~~~~~~h~~~~l~-~~pdG~Lyv~~G~~~~~~~~~d  163 (352)
T 2ism_A           95 YRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGI----------PARPHGLHSGGRIA-FGPDGMLYVTTGEVYERELAQD  163 (352)
T ss_dssp             EEEECTTSSEEEEEEEEECSSCEEEEEEEEEEE----------CCCTTCCCCCCCEE-ECTTSCEEEECCCTTCGGGGGC
T ss_pred             EEecCCCCCccEEEEEEeCCCCcCceEEEEEeC----------CCCCCCCcCCceEE-ECCCCCEEEEECCCCCCccccC
Confidence            99865     7899998543  2   2222110          00011245678888 588999999973          


Q ss_pred             ---CCCeEEEEECCCCc--------------eeeCCCCCccceEEEEe--cceeEEeh
Q 010579          219 ---GNQAIREIQLHDDD--------------CSDNYDDTFHLGIFVLV--AAAFFGYM  257 (507)
Q Consensus       219 ---gn~rIr~I~l~~~~--------------~~~~~~~G~p~gIa~~~--~a~~~gy~  257 (507)
                         ..++|.+|++++..              -.+..+...|.||++..  +..|+.+.
T Consensus       164 ~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~  221 (352)
T 2ism_A          164 LASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEH  221 (352)
T ss_dssp             TTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEE
T ss_pred             CCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEc
Confidence               23799999988621              11112223477888875  34455543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.90  E-value=8e-08  Score=92.72  Aligned_cols=114  Identities=16%  Similarity=0.230  Sum_probs=84.7

Q ss_pred             CCeeEEEEcCC-CcEEEEeCCCCeEEEEeCCCCCCCccEEE-ecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEe
Q 010579           83 MEPFSVAVSPS-GELLVLDSENSNIYKISTSLSPYSRPKLV-AGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIAD  160 (507)
Q Consensus        83 ~~P~gIaVd~d-G~LYVaDs~n~rI~ki~~~g~~~g~i~~v-aG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVAD  160 (507)
                      ..|.+|+++++ |+|||++..+ .|++++.+    +++..+ ....       .+    ..++.|.+|++|++|+|||++
T Consensus        71 ~~~~~i~~~~~~g~l~v~~~~~-~l~~~d~~----g~~~~~~~~~~-------~~----~~~~~~~~i~~d~~g~l~v~~  134 (314)
T 1pjx_A           71 GIPAGCQCDRDANQLFVADMRL-GLLVVQTD----GTFEEIAKKDS-------EG----RRMQGCNDCAFDYEGNLWITA  134 (314)
T ss_dssp             CCEEEEEECSSSSEEEEEETTT-EEEEEETT----SCEEECCSBCT-------TS----CBCBCCCEEEECTTSCEEEEE
T ss_pred             CCCceEEEecCCCcEEEEECCC-CEEEEeCC----CCEEEEEeccC-------CC----ccccCCcCEEECCCCCEEEEe
Confidence            36999999999 9999999754 89999986    444443 3211       00    135679999999999999999


Q ss_pred             CCC---------------CeEEEEcCCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEE---cCCC-eEEEEeCCC
Q 010579          161 TMN---------------MAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYV---GSSC-SLLVIDRGN  220 (507)
Q Consensus       161 s~N---------------~rIrk~d~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~v---d~~G-~LyVaD~gn  220 (507)
                      ..+               .+|.+++.++ +..+..                 .+..|.++++.   +.++ .|||+|..+
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~-----------------~~~~~~~i~~~~~~d~dg~~l~v~~~~~  197 (314)
T 1pjx_A          135 PAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDT-----------------AFQFPNGIAVRHMNDGRPYQLIVAETPT  197 (314)
T ss_dssp             CBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEE-----------------EESSEEEEEEEECTTSCEEEEEEEETTT
T ss_pred             cCcccccccccccccCCCCeEEEECCCCCEEEecc-----------------CCCCcceEEEecccCCCCCEEEEEECCC
Confidence            865               6899999767 433321                 13467888864   0555 799999999


Q ss_pred             CeEEEEECC
Q 010579          221 QAIREIQLH  229 (507)
Q Consensus       221 ~rIr~I~l~  229 (507)
                      ++|++++++
T Consensus       198 ~~i~~~~~~  206 (314)
T 1pjx_A          198 KKLWSYDIK  206 (314)
T ss_dssp             TEEEEEEEE
T ss_pred             CeEEEEECC
Confidence            999999975

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.87  E-value=6.5e-08  Score=99.12  Aligned_cols=127  Identities=15%  Similarity=0.192  Sum_probs=81.8

Q ss_pred             CCeeEEEEcCC----CcEEEEeCC---C----CeEEEEeCCCCC--CCccEEEe-cCCCCccccCCCCcccccCCCcceE
Q 010579           83 MEPFSVAVSPS----GELLVLDSE---N----SNIYKISTSLSP--YSRPKLVA-GSPEGYYGHVDGRPRGARMNHPKGL  148 (507)
Q Consensus        83 ~~P~gIaVd~d----G~LYVaDs~---n----~rI~ki~~~g~~--~g~i~~va-G~~~G~~G~~dG~~~~a~fn~P~GI  148 (507)
                      ..|.+|+++|+    |.|||++..   +    ++|.+++.++..  .....+++ +.+            ......|.+|
T Consensus        73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~------------~~~~h~~~~l  140 (354)
T 3a9g_A           73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIP------------GAYIHNGGRI  140 (354)
T ss_dssp             CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEE------------CCSSCCCCCE
T ss_pred             CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCC------------CCCCcCCceE
Confidence            46999999996    899999974   3    799999876321  01122222 111            0124578899


Q ss_pred             EEcCCCCEEEEeCC-------------CCeEEEEcCCCcEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEE
Q 010579          149 AVDDRGNIYIADTM-------------NMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLV  215 (507)
Q Consensus       149 aVd~dGnIYVADs~-------------N~rIrk~d~~GVstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyV  215 (507)
                      ++++||.|||++..             +.+|.+|+.+|-  +..+.     .+.....-...+.+|++|++.+.+|.|||
T Consensus       141 ~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~--~p~~n-----pf~~~~i~a~G~rnp~Gla~d~~~g~l~v  213 (354)
T 3a9g_A          141 RFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR--PPADN-----PFPNSPIWSYGHRNPQGIDWHRASGVMVA  213 (354)
T ss_dssp             EECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC--CCTTS-----SSTTCCEEEECCSCCCEEEECTTTCCEEE
T ss_pred             EECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC--CCCCC-----CCCCCcEEEEccCCcceEEEeCCCCCEEE
Confidence            99999999999642             358999998771  11000     00001111123678999996444899999


Q ss_pred             EeCCCCe---EEEEEC
Q 010579          216 IDRGNQA---IREIQL  228 (507)
Q Consensus       216 aD~gn~r---Ir~I~l  228 (507)
                      +|.+.++   |.+|..
T Consensus       214 ~d~g~~~~dei~~i~~  229 (354)
T 3a9g_A          214 TEHGPVGHDEVNIILK  229 (354)
T ss_dssp             EECCSSSCCEEEEECT
T ss_pred             EecCCCCCcEEEEecC
Confidence            9998875   666653

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.86  E-value=5.3e-08  Score=99.80  Aligned_cols=157  Identities=19%  Similarity=0.135  Sum_probs=101.6

Q ss_pred             CeeeEEeecCCCCCCCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceE
Q 010579           69 GYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGL  148 (507)
Q Consensus        69 G~~~~~~~~G~~~~~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GI  148 (507)
                      ++.++.+..+   +..|.+|+++++|+|||+|.. ++|++++.+    +. ..+....  ..        ......|.||
T Consensus        18 ~~~~~~va~~---l~~P~~ia~~pdG~l~V~e~~-g~I~~~d~~----G~-~~~~~~~--v~--------~~g~~g~~gi   78 (354)
T 3a9g_A           18 KFKISEVASD---LEVPWSIAPLGGGRYLVTERP-GRLVLISPS----GK-KLVASFD--VA--------NVGEAGLLGL   78 (354)
T ss_dssp             CEEEEEEECS---CSCEEEEEEEETTEEEEEETT-TEEEEECSS----CE-EEEEECC--CC--------CSTTCSEEEE
T ss_pred             CeEEEEEeCC---CCCCeEEEEcCCCeEEEEeCC-CEEEEEeCC----Cc-eEeeccc--ee--------ecCCCceeeE
Confidence            3444444432   357999999999999999987 899999865    54 4454322  00        0124579999


Q ss_pred             EEcCC----CCEEEEeCC---C----CeEEEEcCCC-------cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCC
Q 010579          149 AVDDR----GNIYIADTM---N----MAIRKISDTG-------VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSS  210 (507)
Q Consensus       149 aVd~d----GnIYVADs~---N----~rIrk~d~~G-------VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~  210 (507)
                      +++++    |.|||+++.   +    ++|.+++.++       ..++..+..            ......|.+|+ .+++
T Consensus        79 a~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~------------~~~~h~~~~l~-~~pD  145 (354)
T 3a9g_A           79 ALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIP------------GAYIHNGGRIR-FGPD  145 (354)
T ss_dssp             EECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEE------------CCSSCCCCCEE-ECTT
T ss_pred             EeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCC------------CCCCcCCceEE-ECCC
Confidence            99996    889999974   3    7899988432       122221110            11234678888 5889


Q ss_pred             CeEEEEeC-------------CCCeEEEEECCCCc---------eeeCCCCCccceEEEEe--cceeEEeh
Q 010579          211 CSLLVIDR-------------GNQAIREIQLHDDD---------CSDNYDDTFHLGIFVLV--AAAFFGYM  257 (507)
Q Consensus       211 G~LyVaD~-------------gn~rIr~I~l~~~~---------~~~~~~~G~p~gIa~~~--~a~~~gy~  257 (507)
                      |.|||++.             .+++|.+|++++..         -.+..+.-.|.||++..  +..|+.+.
T Consensus       146 G~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~  216 (354)
T 3a9g_A          146 GMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEH  216 (354)
T ss_dssp             SCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEEC
T ss_pred             CcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEec
Confidence            99999963             24689999988741         12222333477888875  34455443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.85  E-value=4.9e-08  Score=98.03  Aligned_cols=158  Identities=16%  Similarity=0.095  Sum_probs=98.2

Q ss_pred             CCCCeeEEEEcCCCcEEEEeCC-----CCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC-CC
Q 010579           81 FGMEPFSVAVSPSGELLVLDSE-----NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RG  154 (507)
Q Consensus        81 ~~~~P~gIaVd~dG~LYVaDs~-----n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~-dG  154 (507)
                      .+..|.+|++|++|+|||+|.+     .++|.++++.   .+++...+..+...     +    .....|++|++|+ +|
T Consensus        65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~---tg~~~~~~~~~~~~-----~----~~~~~~~~v~vd~~~g  132 (343)
T 2qe8_A           65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTL---NNQLSRVIYLPPPI-----T----LSNSFVNDLAVDLIHN  132 (343)
T ss_dssp             CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETT---TTEEEEEEECCTTT-----S----CTTCCCCEEEEETTTT
T ss_pred             ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECC---CCeEEEEEECChhh-----c----ccccccceEEEecCCC
Confidence            4568999999999999999987     5899999986   35533222211000     0    1235789999996 57


Q ss_pred             CEEEEeC---CCCeEEEEcCC-C-cEEEecCcccCCC----CCCCCCc-----cCc----cCCCCceEEEEcCCCeEEEE
Q 010579          155 NIYIADT---MNMAIRKISDT-G-VTTIAGGKWSRGV----GHVDGPS-----EDA----KFSNDFDVVYVGSSCSLLVI  216 (507)
Q Consensus       155 nIYVADs---~N~rIrk~d~~-G-VstIaGG~~g~~~----G~~dg~~-----~~a----~f~~P~gIa~vd~~G~LyVa  216 (507)
                      .+||+|.   .++.|.+++.. | +..+..+......    -..+|..     ...    ....|++|++.++...||++
T Consensus       133 ~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~  212 (343)
T 2qe8_A          133 FVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLS  212 (343)
T ss_dssp             EEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEE
T ss_pred             EEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEE
Confidence            8999999   88999999954 4 4443322100000    0001100     000    01358899964444479999


Q ss_pred             eCCCCeEEEEECCC---Cc---------eeeCCCCCccceEEEEec
Q 010579          217 DRGNQAIREIQLHD---DD---------CSDNYDDTFHLGIFVLVA  250 (507)
Q Consensus       217 D~gn~rIr~I~l~~---~~---------~~~~~~~G~p~gIa~~~~  250 (507)
                      +..+++|++++...   ..         .......+.|.||+++..
T Consensus       213 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~  258 (343)
T 2qe8_A          213 PMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKD  258 (343)
T ss_dssp             ESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTT
T ss_pred             eCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCC
Confidence            99999999998531   10         011122357889998764

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.84  E-value=4.9e-08  Score=100.21  Aligned_cols=137  Identities=17%  Similarity=0.148  Sum_probs=90.0

Q ss_pred             CCeeEEEE---cCCCcEEE-EeC------------CCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcc
Q 010579           83 MEPFSVAV---SPSGELLV-LDS------------ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPK  146 (507)
Q Consensus        83 ~~P~gIaV---d~dG~LYV-aDs------------~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~  146 (507)
                      ..|.||.+   |++|.||| +|.            +.+.|.+++++++.+++....+.-..-..+.  -......+..|+
T Consensus        63 ~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~--~~~~g~~~~~~n  140 (334)
T 2p9w_A           63 QQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEF--EKKAGKRPFGVV  140 (334)
T ss_dssp             EEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHH--HHHHSSCCEEEE
T ss_pred             ceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccc--cccccccccCCc
Confidence            36899999   78999998 562            3578999998744434444433221000000  000001244689


Q ss_pred             eEEEcCCCCEEEEeCCC-CeEEEEcCCCcEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEE
Q 010579          147 GLAVDDRGNIYIADTMN-MAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIRE  225 (507)
Q Consensus       147 GIaVd~dGnIYVADs~N-~rIrk~d~~GVstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~  225 (507)
                      +|++|++||+||+|+.. ..|.+++.+|....+....        .+ .......++||++.++...|+|++. .++|.+
T Consensus       141 DvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~--------~~-~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~  210 (334)
T 2p9w_A          141 QSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWE--------SG-NGGQRPGYSGITFDPHSNKLIAFGG-PRALTA  210 (334)
T ss_dssp             EEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEEC--------CC-CSSSCCSCSEEEEETTTTEEEEESS-SSSEEE
T ss_pred             eeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeec--------CC-CcccccCcceEEEeCCCCEEEEEcC-CCeEEE
Confidence            99999999999999999 9999999999322221110        00 1123457899998766667888888 999999


Q ss_pred             EECCCC
Q 010579          226 IQLHDD  231 (507)
Q Consensus       226 I~l~~~  231 (507)
                      |++...
T Consensus       211 fD~~~p  216 (334)
T 2p9w_A          211 FDVSKP  216 (334)
T ss_dssp             EECSSS
T ss_pred             EcCCCC
Confidence            998853

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.82  E-value=2.2e-07  Score=91.03  Aligned_cols=136  Identities=10%  Similarity=0.093  Sum_probs=93.2

Q ss_pred             CCeeEEEEcCCCcEEEEeCC------CCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-
Q 010579           83 MEPFSVAVSPSGELLVLDSE------NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-  155 (507)
Q Consensus        83 ~~P~gIaVd~dG~LYVaDs~------n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-  155 (507)
                      ..|.+|+++++|+|||++..      +.+|++++.++   +.+..+..                .+..|.+|+++++|+ 
T Consensus       135 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~----------------~~~~~~~i~~~~dg~~  195 (333)
T 2dg1_A          135 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF---RTVTPIIQ----------------NISVANGIALSTDEKV  195 (333)
T ss_dssp             CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS---CCEEEEEE----------------EESSEEEEEECTTSSE
T ss_pred             CcccceEECCCCCEEEEeccccccCCCceEEEEeCCC---CEEEEeec----------------CCCcccceEECCCCCE
Confidence            57999999999999999875      47899998763   33333321                134689999999997 


Q ss_pred             EEEEeCCCCeEEEEcC--CC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 010579          156 IYIADTMNMAIRKISD--TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD  231 (507)
Q Consensus       156 IYVADs~N~rIrk~d~--~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~  231 (507)
                      |||+|..+++|++++.  +|  +..+......    ...      ....|.+|+ ++.+|+|||++..+++|+++++++.
T Consensus       196 l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~----~~~------~~~~~~~i~-~d~~G~l~v~~~~~~~v~~~d~~g~  264 (333)
T 2dg1_A          196 LWVTETTANRLHRIALEDDGVTIQPFGATIPY----YFT------GHEGPDSCC-IDSDDNLYVAMYGQGRVLVFNKRGY  264 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE----ECC------SSSEEEEEE-EBTTCCEEEEEETTTEEEEECTTSC
T ss_pred             EEEEeCCCCeEEEEEecCCCcCcccccceEEE----ecC------CCCCCCceE-ECCCCCEEEEEcCCCEEEEECCCCC
Confidence            9999999999999985  44  2222100000    000      113678887 5889999999999999999998655


Q ss_pred             ceeeC-CCC---C---ccceEEEE
Q 010579          232 DCSDN-YDD---T---FHLGIFVL  248 (507)
Q Consensus       232 ~~~~~-~~~---G---~p~gIa~~  248 (507)
                      ..... ...   |   .|.++++.
T Consensus       265 ~~~~~~~~~~~~g~~~~~~~~~~~  288 (333)
T 2dg1_A          265 PIGQILIPGRDEGHMLRSTHPQFI  288 (333)
T ss_dssp             EEEEEECTTGGGTCSCBCCEEEEC
T ss_pred             EEEEEEcCCCccccccCcceEEEC
Confidence            43221 111   1   56677764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.81  E-value=6.1e-08  Score=93.59  Aligned_cols=138  Identities=14%  Similarity=0.190  Sum_probs=96.7

Q ss_pred             CCeeEEEEcCCCcEEEE-------eCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCC-C
Q 010579           83 MEPFSVAVSPSGELLVL-------DSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDR-G  154 (507)
Q Consensus        83 ~~P~gIaVd~dG~LYVa-------Ds~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~d-G  154 (507)
                      ..|.+++++++|+|||+       |..+++|++++..   .+++..+...  ..    .+     ....|.+|++|++ |
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~---~g~~~~~~~~--~~----~~-----~~~~~~~i~~~~~~g   83 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLK---TGKKTVICKP--EV----NG-----YGGIPAGCQCDRDAN   83 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTT---TCCEEEEECC--EE----TT-----EECCEEEEEECSSSS
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCC---CCcEEEEEec--cc----CC-----CCCCCceEEEecCCC
Confidence            47999999999999999       8888999999965   2555444320  00    00     1357999999999 9


Q ss_pred             CEEEEeCCCCeEEEEcCCC-cEEE-ecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCC------------
Q 010579          155 NIYIADTMNMAIRKISDTG-VTTI-AGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN------------  220 (507)
Q Consensus       155 nIYVADs~N~rIrk~d~~G-VstI-aGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn------------  220 (507)
                      +|||++..+ +|.+++.+| +..+ ....            ....+..|.+|+ .+.+|+|||++..+            
T Consensus        84 ~l~v~~~~~-~l~~~d~~g~~~~~~~~~~------------~~~~~~~~~~i~-~d~~g~l~v~~~~~~~~~~~~~~~~~  149 (314)
T 1pjx_A           84 QLFVADMRL-GLLVVQTDGTFEEIAKKDS------------EGRRMQGCNDCA-FDYEGNLWITAPAGEVAPADYTRSMQ  149 (314)
T ss_dssp             EEEEEETTT-EEEEEETTSCEEECCSBCT------------TSCBCBCCCEEE-ECTTSCEEEEECBCBCTTSCCCBTTS
T ss_pred             cEEEEECCC-CEEEEeCCCCEEEEEeccC------------CCccccCCcCEE-ECCCCCEEEEecCccccccccccccc
Confidence            999999855 899999667 4333 2110            012346789998 58899999999876            


Q ss_pred             ---CeEEEEECCCCceeeCCCCCccceEEEE
Q 010579          221 ---QAIREIQLHDDDCSDNYDDTFHLGIFVL  248 (507)
Q Consensus       221 ---~rIr~I~l~~~~~~~~~~~G~p~gIa~~  248 (507)
                         +.|.++++++...........|.++++.
T Consensus       150 ~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~  180 (314)
T 1pjx_A          150 EKFGSIYCFTTDGQMIQVDTAFQFPNGIAVR  180 (314)
T ss_dssp             SSCEEEEEECTTSCEEEEEEEESSEEEEEEE
T ss_pred             CCCCeEEEECCCCCEEEeccCCCCcceEEEe
Confidence               6899998874322222233457788776

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.76  E-value=1.3e-06  Score=85.35  Aligned_cols=114  Identities=17%  Similarity=0.222  Sum_probs=84.5

Q ss_pred             CCeeEEEEcCCCcEEEEeCCC----CeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEE
Q 010579           83 MEPFSVAVSPSGELLVLDSEN----SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYI  158 (507)
Q Consensus        83 ~~P~gIaVd~dG~LYVaDs~n----~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYV  158 (507)
                      ..|.+|+++++|+|||++..+    +.|++++.++   +.+..+....             ...+.|.+|++|++|+|||
T Consensus        87 ~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~---~~~~~~~~~~-------------~~~~~~~~i~~d~~g~l~v  150 (333)
T 2dg1_A           87 ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG---DNLQDIIEDL-------------STAYCIDDMVFDSKGGFYF  150 (333)
T ss_dssp             SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS---CSCEEEECSS-------------SSCCCEEEEEECTTSCEEE
T ss_pred             CCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCC---CEEEEEEccC-------------ccCCcccceEECCCCCEEE
Confidence            479999999999999999876    7999999873   3343222110             0124789999999999999


Q ss_pred             EeCC------CCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCC-eEEEEeCCCCeEEEEECC
Q 010579          159 ADTM------NMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLH  229 (507)
Q Consensus       159 ADs~------N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G-~LyVaD~gn~rIr~I~l~  229 (507)
                      ++..      +.+|.+++.++  +..+..                 .+..|.++++ ++++ .|||++..+++|++++++
T Consensus       151 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------------~~~~~~~i~~-~~dg~~l~v~~~~~~~i~~~d~~  212 (333)
T 2dg1_A          151 TDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-----------------NISVANGIAL-STDEKVLWVTETTANRLHRIALE  212 (333)
T ss_dssp             EECCCBTTBCCEEEEEECTTSCCEEEEEE-----------------EESSEEEEEE-CTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             EeccccccCCCceEEEEeCCCCEEEEeec-----------------CCCcccceEE-CCCCCEEEEEeCCCCeEEEEEec
Confidence            9975      46899999664  333321                 1335788885 6666 599999999999999985


Q ss_pred             C
Q 010579          230 D  230 (507)
Q Consensus       230 ~  230 (507)
                      .
T Consensus       213 ~  213 (333)
T 2dg1_A          213 D  213 (333)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.75  E-value=1.4e-07  Score=94.61  Aligned_cols=125  Identities=11%  Similarity=0.075  Sum_probs=88.1

Q ss_pred             CCeeEEEEcCCCcEEEEeCC--C--CeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEE
Q 010579           83 MEPFSVAVSPSGELLVLDSE--N--SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYI  158 (507)
Q Consensus        83 ~~P~gIaVd~dG~LYVaDs~--n--~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYV  158 (507)
                      ..|.+|+++++|++||+...  .  .+|.+++ +    +.+..+.....      +   ....|..|.+|++|++|+|||
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~-~----g~~~~~p~~~~------~---~~~~~~~p~gv~~d~~g~L~v   82 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT-Q----DGLIPFPPQSG------N---AIITFDTVLGIKSDGNGIVWM   82 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE-T----TEEEESCCCCS------S---CCCCCSCEEEEEECSSSEEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEEC-C----CCeecCCCccc------C---cccceeEeeEEEEcCCCcEEE
Confidence            37999999999999999752  2  3888888 4    44332221100      0   123588999999999999999


Q ss_pred             EeCC-----CCeEEEEcCC-C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeC---CCCeEEEEE
Q 010579          159 ADTM-----NMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR---GNQAIREIQ  227 (507)
Q Consensus       159 ADs~-----N~rIrk~d~~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~---gn~rIr~I~  227 (507)
                      +|.+     ..+|.++|.. |  +.++.....       .    ......|++|++...++.+||+|.   .++.|.+++
T Consensus        83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~-------~----~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d  151 (343)
T 2qe8_A           83 LDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPP-------I----TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVD  151 (343)
T ss_dssp             EECHHHHTSCCEEEEEETTTTEEEEEEECCTT-------T----SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEE
T ss_pred             EcCCCCcCCCCeEEEEECCCCeEEEEEECChh-------h----cccccccceEEEecCCCEEEEEcCccCCCCeEEEEE
Confidence            9987     5899999954 5  344432110       0    012346889996446789999999   899999999


Q ss_pred             CCCCc
Q 010579          228 LHDDD  232 (507)
Q Consensus       228 l~~~~  232 (507)
                      +.+..
T Consensus       152 ~~~g~  156 (343)
T 2qe8_A          152 LQTGL  156 (343)
T ss_dssp             TTTCC
T ss_pred             CCCCC
Confidence            87543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.75  E-value=2.3e-06  Score=83.24  Aligned_cols=141  Identities=18%  Similarity=0.214  Sum_probs=92.2

Q ss_pred             CeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeC
Q 010579           84 EPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT  161 (507)
Q Consensus        84 ~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs  161 (507)
                      .|.+++++++|. |||++...+.|.+++...   +++........+.      .........|.+++++++|+ +||++.
T Consensus        90 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~---~~~~~~~~~~~~~------~~~~~~~~~~~~~~~s~dg~~l~~~~~  160 (353)
T 3vgz_A           90 KPFGATINNTTQTLWFGNTVNSAVTAIDAKT---GEVKGRLVLDDRK------RTEEVRPLQPRELVADDATNTVYISGI  160 (353)
T ss_dssp             CCCSEEEETTTTEEEEEETTTTEEEEEETTT---CCEEEEEESCCCC------CCSSCCCCEEEEEEEETTTTEEEEEEE
T ss_pred             CcceEEECCCCCEEEEEecCCCEEEEEeCCC---CeeEEEEecCCCc------cccccCCCCCceEEECCCCCEEEEEec
Confidence            589999999987 999999999999999863   4433222211000      00011223588999999988 999994


Q ss_pred             -CCCeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceeeC-
Q 010579          162 -MNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN-  236 (507)
Q Consensus       162 -~N~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~~-  236 (507)
                       .+++|.++|...   +.++...                 -..|.++++.++...||+++. ++.|..+++........ 
T Consensus       161 ~~~~~i~~~d~~~~~~~~~~~~~-----------------~~~~~~~~~s~dg~~l~~~~~-~~~i~~~d~~~~~~~~~~  222 (353)
T 3vgz_A          161 GKESVIWVVDGGNIKLKTAIQNT-----------------GKMSTGLALDSEGKRLYTTNA-DGELITIDTADNKILSRK  222 (353)
T ss_dssp             SSSCEEEEEETTTTEEEEEECCC-----------------CTTCCCCEEETTTTEEEEECT-TSEEEEEETTTTEEEEEE
T ss_pred             CCCceEEEEcCCCCceEEEecCC-----------------CCccceEEECCCCCEEEEEcC-CCeEEEEECCCCeEEEEE
Confidence             478899999654   2333100                 114677887666667888876 68899999887665431 


Q ss_pred             -C----CCCccceEEEEecc
Q 010579          237 -Y----DDTFHLGIFVLVAA  251 (507)
Q Consensus       237 -~----~~G~p~gIa~~~~a  251 (507)
                       .    ....+.++++....
T Consensus       223 ~~~~~~~~~~~~~~~~s~dg  242 (353)
T 3vgz_A          223 KLLDDGKEHFFINISLDTAR  242 (353)
T ss_dssp             ECCCSSSCCCEEEEEEETTT
T ss_pred             EcCCCCCCcccceEEECCCC
Confidence             1    12345667776543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.71  E-value=1.2e-07  Score=98.11  Aligned_cols=140  Identities=13%  Similarity=0.095  Sum_probs=98.5

Q ss_pred             CCeeEEEEcC--CC--cEEEEeCC--CCe--EEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCC
Q 010579           83 MEPFSVAVSP--SG--ELLVLDSE--NSN--IYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRG  154 (507)
Q Consensus        83 ~~P~gIaVd~--dG--~LYVaDs~--n~r--I~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dG  154 (507)
                      .+|+||.+..  +|  +|||++..  +++  |++++..    +...+++...       .+    ..|+.|++++++++|
T Consensus       112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~----~~~~~~~~~~-------~g----~~~~~pND~~v~~~G  176 (355)
T 3sre_A          112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEE----EKSLLHLKTI-------RH----KLLPSVNDIVAVGPE  176 (355)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETT----TTEEEEEEEE-------CC----TTCSSEEEEEEEETT
T ss_pred             eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECC----CCEEEEEecc-------cc----CCCCCCceEEEeCCC
Confidence            4899999965  45  59999987  455  5555554    2333333221       11    258999999999999


Q ss_pred             CEEEEeC-----------------CCCeEEEEcCCCcEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEe
Q 010579          155 NIYIADT-----------------MNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVID  217 (507)
Q Consensus       155 nIYVADs-----------------~N~rIrk~d~~GVstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD  217 (507)
                      .+||++.                 ...+|.+++.+.++.++.                 .+..|+||++.++...|||+|
T Consensus       177 ~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~~-----------------~l~~pNGia~spDg~~lYvad  239 (355)
T 3sre_A          177 HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE-----------------GFDFANGINISPDGKYVYIAE  239 (355)
T ss_dssp             EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEEEE-----------------EESSEEEEEECTTSSEEEEEE
T ss_pred             CEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEeec-----------------CCcccCcceECCCCCEEEEEe
Confidence            9999875                 235788888755665542                 266899999755556899999


Q ss_pred             CCCCeEEEEECCCCc-ee---eCCCCCccceEEEEe--cceeE
Q 010579          218 RGNQAIREIQLHDDD-CS---DNYDDTFHLGIFVLV--AAAFF  254 (507)
Q Consensus       218 ~gn~rIr~I~l~~~~-~~---~~~~~G~p~gIa~~~--~a~~~  254 (507)
                      +..++|++++++.+. ..   .....+.|.|++++.  |..++
T Consensus       240 t~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwv  282 (355)
T 3sre_A          240 LLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWV  282 (355)
T ss_dssp             GGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEE
T ss_pred             CCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEE
Confidence            999999999987532 11   113357899999997  44555

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.64  E-value=2.1e-06  Score=84.34  Aligned_cols=131  Identities=12%  Similarity=0.044  Sum_probs=94.2

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  163 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N  163 (507)
                      .|.+++++++|+++|++..+++|+.++++    |+..-..+..                ..|.+++++++|+++|++..+
T Consensus       126 ~~~~v~~~~~G~~lv~~~~~~~v~~~d~~----G~~~w~~~~~----------------~~~~~~~~~~~g~~~v~~~~~  185 (276)
T 3no2_A          126 QFRQINKNKKGNYLVPLFATSEVREIAPN----GQLLNSVKLS----------------GTPFSSAFLDNGDCLVACGDA  185 (276)
T ss_dssp             SCSCCEECTTSCEEEEETTTTEEEEECTT----SCEEEEEECS----------------SCCCEEEECTTSCEEEECBTT
T ss_pred             cccCceECCCCCEEEEecCCCEEEEECCC----CCEEEEEECC----------------CCccceeEcCCCCEEEEeCCC
Confidence            57788999999999999999999999987    3333222211                257889999999999999999


Q ss_pred             CeEEEEcCC-C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCC----------CCeEEEEECCC
Q 010579          164 MAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG----------NQAIREIQLHD  230 (507)
Q Consensus       164 ~rIrk~d~~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~g----------n~rIr~I~l~~  230 (507)
                      ++|..||.+ |  +..+....           .....|..|.+++ ...+|++||++..          +.++.+|+.++
T Consensus       186 ~~v~~~d~~tG~~~w~~~~~~-----------~~~~~l~~~~~~~-~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g  253 (276)
T 3no2_A          186 HCFVQLNLESNRIVRRVNAND-----------IEGVQLFFVAQLF-PLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEG  253 (276)
T ss_dssp             SEEEEECTTTCCEEEEEEGGG-----------SBSCCCSEEEEEE-ECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTS
T ss_pred             CeEEEEeCcCCcEEEEecCCC-----------CCCccccccccce-EcCCCCEEEEeccCccccccccCCceEEEECCCC
Confidence            999999977 7  45553211           0112477889988 5789999999962          44688888766


Q ss_pred             Cce-ee--CCCCCccceEE
Q 010579          231 DDC-SD--NYDDTFHLGIF  246 (507)
Q Consensus       231 ~~~-~~--~~~~G~p~gIa  246 (507)
                      +.+ .+  ....|.+.+|+
T Consensus       254 ~~~W~~~~~~~~~~~~~~~  272 (276)
T 3no2_A          254 KVVWQLNDKVKFGMISTIC  272 (276)
T ss_dssp             BEEEEECCTTTSCCCCEEE
T ss_pred             CEEEEecCcccccceeeee
Confidence            543 12  23344555554

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.64  E-value=2.4e-06  Score=85.13  Aligned_cols=132  Identities=12%  Similarity=0.082  Sum_probs=90.9

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC-
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM-  162 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~-  162 (507)
                      .|.+|+++++|++||+.  .+.|++++..   .+.+..+.....       +    ...+.|+++++|++|++||++.. 
T Consensus        91 ~v~~i~~~~dg~l~v~~--~~gl~~~d~~---~g~~~~~~~~~~-------~----~~~~~~~~i~~d~~G~l~v~~~~~  154 (326)
T 2ghs_A           91 MGSALAKISDSKQLIAS--DDGLFLRDTA---TGVLTLHAELES-------D----LPGNRSNDGRMHPSGALWIGTMGR  154 (326)
T ss_dssp             CEEEEEEEETTEEEEEE--TTEEEEEETT---TCCEEEEECSST-------T----CTTEEEEEEEECTTSCEEEEEEET
T ss_pred             cceEEEEeCCCeEEEEE--CCCEEEEECC---CCcEEEEeeCCC-------C----CCCCCCCCEEECCCCCEEEEeCCC
Confidence            68899999999999997  4579999986   255555543210       0    12457889999999999999863 


Q ss_pred             -----CCeEEEEcCCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCC-eEEEEeCCCCeEEEEECC--CC-c
Q 010579          163 -----NMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLH--DD-D  232 (507)
Q Consensus       163 -----N~rIrk~d~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G-~LyVaD~gn~rIr~I~l~--~~-~  232 (507)
                           ..+|.+++ +| +..+..                 .+..|+++++ +.++ .|||+|..+++|++++.+  ++ .
T Consensus       155 ~~~~~~~~l~~~~-~g~~~~~~~-----------------~~~~~~~i~~-s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~  215 (326)
T 2ghs_A          155 KAETGAGSIYHVA-KGKVTKLFA-----------------DISIPNSICF-SPDGTTGYFVDTKVNRLMRVPLDARTGLP  215 (326)
T ss_dssp             TCCTTCEEEEEEE-TTEEEEEEE-----------------EESSEEEEEE-CTTSCEEEEEETTTCEEEEEEBCTTTCCB
T ss_pred             cCCCCceEEEEEe-CCcEEEeeC-----------------CCcccCCeEE-cCCCCEEEEEECCCCEEEEEEcccccCCc
Confidence                 46788998 66 443321                 1235778886 5555 699999999999999985  33 2


Q ss_pred             e-----e--eCCCCCccceEEEEec
Q 010579          233 C-----S--DNYDDTFHLGIFVLVA  250 (507)
Q Consensus       233 ~-----~--~~~~~G~p~gIa~~~~  250 (507)
                      .     .  .....+.|.+++++..
T Consensus       216 ~~~~~~~~~~~~~~~~p~gi~~d~~  240 (326)
T 2ghs_A          216 TGKAEVFIDSTGIKGGMDGSVCDAE  240 (326)
T ss_dssp             SSCCEEEEECTTSSSEEEEEEECTT
T ss_pred             ccCceEEEECCCCCCCCCeeEECCC
Confidence            1     1  1123456778777654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.56  E-value=1.5e-06  Score=85.47  Aligned_cols=146  Identities=18%  Similarity=0.166  Sum_probs=93.0

Q ss_pred             CeeEEEEcCCCcEEEEeCC--CCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEe
Q 010579           84 EPFSVAVSPSGELLVLDSE--NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIAD  160 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~--n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVAD  160 (507)
                      .|.+|+++|||.||+++..  ++.|++++.++   +....+....             .....|.+|+++++|+ ||+++
T Consensus        41 ~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~---g~~~~~~~~~-------------~~~~~p~~~a~spdg~~l~~~~  104 (347)
T 3hfq_A           41 NPTYLALSAKDCLYSVDKEDDEGGIAAWQIDG---QTAHKLNTVV-------------APGTPPAYVAVDEARQLVYSAN  104 (347)
T ss_dssp             CCCCEEECTTCEEEEEEEETTEEEEEEEEEET---TEEEEEEEEE-------------EESCCCSEEEEETTTTEEEEEE
T ss_pred             CcceEEEccCCeEEEEEecCCCceEEEEEecC---CcEEEeeeee-------------cCCCCCEEEEECCCCCEEEEEe
Confidence            6999999999999999864  67899998752   3333322100             0124799999999998 99999


Q ss_pred             CCCCeEEEEc--CCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCC-Cceee-
Q 010579          161 TMNMAIRKIS--DTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD-DDCSD-  235 (507)
Q Consensus       161 s~N~rIrk~d--~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~-~~~~~-  235 (507)
                      ..++.|++++  .+| ...+.....   .+  .++........|.++++ +++|.||+++.+++.|+.+++.. +.+.. 
T Consensus       105 ~~~~~v~v~~~~~~g~~~~~~~~~~---~~--~~p~~~~~~~~~~~~~~-spdg~l~v~~~~~~~v~~~~~~~~g~~~~~  178 (347)
T 3hfq_A          105 YHKGTAEVMKIAADGALTLTDTVQH---SG--HGPRPEQDGSHIHYTDL-TPDNRLAVIDLGSDKVYVYNVSDAGQLSEQ  178 (347)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEEEC---CC--CCSSTTCSSCCEEEEEE-CTTSCEEEEETTTTEEEEEEECTTSCEEEE
T ss_pred             CCCCEEEEEEeCCCCCeeecceeec---CC--CCCCccccCCCceEEEE-CCCCcEEEEeCCCCEEEEEEECCCCcEEEe
Confidence            8888888887  344 333221100   00  01111123456778885 67777999999999999999873 32221 


Q ss_pred             ---CC-CCCccceEEEEecc
Q 010579          236 ---NY-DDTFHLGIFVLVAA  251 (507)
Q Consensus       236 ---~~-~~G~p~gIa~~~~a  251 (507)
                         .. ....|.++++....
T Consensus       179 ~~~~~~~g~~p~~~~~spdg  198 (347)
T 3hfq_A          179 SVLTMEAGFGPRHLVFSPDG  198 (347)
T ss_dssp             EEEECCTTCCEEEEEECTTS
T ss_pred             eeEEcCCCCCCceEEECCCC
Confidence               11 12246666665543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.56  E-value=1.8e-06  Score=86.13  Aligned_cols=130  Identities=12%  Similarity=0.137  Sum_probs=89.8

Q ss_pred             CCeeEEEEcCCCcEEEEeCC------CCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-
Q 010579           83 MEPFSVAVSPSGELLVLDSE------NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-  155 (507)
Q Consensus        83 ~~P~gIaVd~dG~LYVaDs~------n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-  155 (507)
                      ..|.++++|++|+|||++..      .++|++++ +    +.+..+..                .+..|++|+++++|+ 
T Consensus       134 ~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~----g~~~~~~~----------------~~~~~~~i~~s~dg~~  192 (326)
T 2ghs_A          134 NRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-K----GKVTKLFA----------------DISIPNSICFSPDGTT  192 (326)
T ss_dssp             EEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-T----TEEEEEEE----------------EESSEEEEEECTTSCE
T ss_pred             CCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-C----CcEEEeeC----------------CCcccCCeEEcCCCCE
Confidence            46889999999999999863      46899998 5    44444321                134688999999996 


Q ss_pred             EEEEeCCCCeEEEEcC---CC-c----EEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEE
Q 010579          156 IYIADTMNMAIRKISD---TG-V----TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQ  227 (507)
Q Consensus       156 IYVADs~N~rIrk~d~---~G-V----stIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~  227 (507)
                      |||+|+.+++|.+++.   +| .    ..+...         +     .....|.+++ +|.+|+|||++.++++|.+++
T Consensus       193 lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~---------~-----~~~~~p~gi~-~d~~G~lwva~~~~~~v~~~d  257 (326)
T 2ghs_A          193 GYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDS---------T-----GIKGGMDGSV-CDAEGHIWNARWGEGAVDRYD  257 (326)
T ss_dssp             EEEEETTTCEEEEEEBCTTTCCBSSCCEEEEEC---------T-----TSSSEEEEEE-ECTTSCEEEEEETTTEEEEEC
T ss_pred             EEEEECCCCEEEEEEcccccCCcccCceEEEEC---------C-----CCCCCCCeeE-ECCCCCEEEEEeCCCEEEEEC
Confidence            9999999999999984   34 1    112110         0     0113577887 689999999999889999999


Q ss_pred             CCCCceeeC-CCCCccceEEEE
Q 010579          228 LHDDDCSDN-YDDTFHLGIFVL  248 (507)
Q Consensus       228 l~~~~~~~~-~~~G~p~gIa~~  248 (507)
                      +++...... .....+.++++.
T Consensus       258 ~~g~~~~~i~~~~~~~~~~af~  279 (326)
T 2ghs_A          258 TDGNHIARYEVPGKQTTCPAFI  279 (326)
T ss_dssp             TTCCEEEEEECSCSBEEEEEEE
T ss_pred             CCCCEEEEEECCCCCcEEEEEe
Confidence            865543322 122235555554

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.52  E-value=1.9e-06  Score=88.07  Aligned_cols=136  Identities=10%  Similarity=0.105  Sum_probs=86.3

Q ss_pred             CCeeeEEeecCCCCCCCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccE-EEecCCCCccccCCCCcccccCCCc
Q 010579           68 GGYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPK-LVAGSPEGYYGHVDGRPRGARMNHP  145 (507)
Q Consensus        68 ~G~~~~~~~~G~~~~~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~-~vaG~~~G~~G~~dG~~~~a~fn~P  145 (507)
                      .|+.++.+..+   +..|.+|+++++|+ |||++.. ++|++++.+    +... .+.+...-.         ......|
T Consensus         6 ~g~~~~~va~~---l~~P~~i~~~pdG~~l~V~e~~-G~i~~~~~~----g~~~~~~~~~~~v~---------~~g~~g~   68 (353)
T 2g8s_A            6 ATVNVEVLQDK---LDHPWALAFLPDNHGMLITLRG-GELRHWQAG----KGLSAPLSGVPDVW---------AHGQGGL   68 (353)
T ss_dssp             CCSEEEEEEEE---ESSEEEEEECSTTCCEEEEETT-TEEEEEETT----TEECCCCBSCCCCC---------CSTTCSE
T ss_pred             CCcEEEEEECC---CCCcEEEEEcCCCCEEEEEeCC-ceEEEEeCC----CceeeEecCCcccc---------cCCCCCc
Confidence            34444444432   34899999999999 9999974 899999876    3221 222221000         0113467


Q ss_pred             ceEEEcC----CCCEEEEeCC-------CCeEEEEcCC---C----cEEEecCcccCCCCCCCCCccCccCCCCceEEEE
Q 010579          146 KGLAVDD----RGNIYIADTM-------NMAIRKISDT---G----VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYV  207 (507)
Q Consensus       146 ~GIaVd~----dGnIYVADs~-------N~rIrk~d~~---G----VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~v  207 (507)
                      .||++++    +|.|||+++.       .++|.+++.+   +    ..++..+.          +........+.+|+ .
T Consensus        69 ~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~----------p~~~~~~h~~~~l~-~  137 (353)
T 2g8s_A           69 LDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQM----------PKLSTGNHFGGRLV-F  137 (353)
T ss_dssp             EEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECS----------SCCBSSSCCCCCEE-E
T ss_pred             eeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEEC----------CCCCCCcccCccEE-E
Confidence            8999998    5889999875       4688887632   1    22222111          00111234577888 4


Q ss_pred             cCCCeEEEEeCC-------------CCeEEEEECCCC
Q 010579          208 GSSCSLLVIDRG-------------NQAIREIQLHDD  231 (507)
Q Consensus       208 d~~G~LyVaD~g-------------n~rIr~I~l~~~  231 (507)
                      +++|.|||+.-.             .++|.+|++++.
T Consensus       138 ~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~  174 (353)
T 2g8s_A          138 DGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE  174 (353)
T ss_dssp             CSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred             CCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence            889999999632             368999998864

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=98.52  E-value=1.9e-06  Score=91.45  Aligned_cols=123  Identities=17%  Similarity=0.240  Sum_probs=79.6

Q ss_pred             CCeeeEEeecCCCCCCCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcce
Q 010579           68 GGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKG  147 (507)
Q Consensus        68 ~G~~~~~~~~G~~~~~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~G  147 (507)
                      .++.++.+..+   +..|++|+++++|+|||++...++|++++..   .+....+.........       ......+.|
T Consensus        15 ~gf~~~~~a~~---l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~---~g~~~~~~~~~~~~~~-------~~g~~Gllg   81 (454)
T 1cru_A           15 ENFDKKVILSN---LNKPHALLWGPDNQIWLTERATGKILRVNPE---SGSVKTVFQVPEIVND-------ADGQNGLLG   81 (454)
T ss_dssp             TTSCEEEEECC---CSSEEEEEECTTSCEEEEETTTCEEEEECTT---TCCEEEEEECTTCCCC-------TTSSCSEEE
T ss_pred             CCeEEEEEECC---CCCceEEEEcCCCcEEEEEcCCCEEEEEECC---CCcEeEEecCCccccc-------cCCCCceeE
Confidence            45555555543   4589999999999999999987899999875   2455555443211100       001245779


Q ss_pred             EEEcC----CCCEEEEeCC------------CCeEEEEcCC---C----cEEEecCcccCCCCCCCCCccCccCCCCceE
Q 010579          148 LAVDD----RGNIYIADTM------------NMAIRKISDT---G----VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDV  204 (507)
Q Consensus       148 IaVd~----dGnIYVADs~------------N~rIrk~d~~---G----VstIaGG~~g~~~G~~dg~~~~a~f~~P~gI  204 (507)
                      |++++    +|.|||+++.            ..+|.+++.+   +    ..+|.-+..          .  ...-.+.+|
T Consensus        82 ia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p----------~--~~~H~~~~l  149 (454)
T 1cru_A           82 FAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP----------S--SKDHQSGRL  149 (454)
T ss_dssp             EEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC----------C--CSSCCEEEE
T ss_pred             EEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCC----------C--CCCCCCCeE
Confidence            99999    7889999974            4688888731   1    123321110          0  113457788


Q ss_pred             EEEcCCCeEEEE
Q 010579          205 VYVGSSCSLLVI  216 (507)
Q Consensus       205 a~vd~~G~LyVa  216 (507)
                      + .+.+|.|||+
T Consensus       150 ~-f~pDG~Lyv~  160 (454)
T 1cru_A          150 V-IGPDQKIYYT  160 (454)
T ss_dssp             E-ECTTSCEEEE
T ss_pred             e-ECCCCeEEEE
Confidence            8 5889999998

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.51  E-value=1.7e-07  Score=96.95  Aligned_cols=113  Identities=14%  Similarity=0.114  Sum_probs=79.5

Q ss_pred             CCCCCeeEEEEcCCCcEEEEeC-----------------CCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccC
Q 010579           80 KFGMEPFSVAVSPSGELLVLDS-----------------ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARM  142 (507)
Q Consensus        80 ~~~~~P~gIaVd~dG~LYVaDs-----------------~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~f  142 (507)
                      ..+..|++++++++|.+||++.                 ..++|+++++.     .+..++.                .|
T Consensus       162 ~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~-----~~~~~~~----------------~l  220 (355)
T 3sre_A          162 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN-----DVRVVAE----------------GF  220 (355)
T ss_dssp             TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT-----CCEEEEE----------------EE
T ss_pred             CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC-----eEEEeec----------------CC
Confidence            3467999999999999999875                 24689999862     3444432                26


Q ss_pred             CCcceEEEcCCCC-EEEEeCCCCeEEEEc--CCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcC-CCeEEEEe
Q 010579          143 NHPKGLAVDDRGN-IYIADTMNMAIRKIS--DTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGS-SCSLLVID  217 (507)
Q Consensus       143 n~P~GIaVd~dGn-IYVADs~N~rIrk~d--~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~-~G~LyVaD  217 (507)
                      ..|+||++++||. |||||+..++|++++  .+| +...   ..   . .        .-..|.+++ +|. +|+|||+.
T Consensus       221 ~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~---~~---~-~--------~~g~PDGi~-vD~e~G~lwva~  284 (355)
T 3sre_A          221 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPL---RV---L-S--------FDTLVDNIS-VDPVTGDLWVGC  284 (355)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEE---EE---E-E--------CSSEEEEEE-ECTTTCCEEEEE
T ss_pred             cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecC---EE---E-e--------CCCCCceEE-EeCCCCcEEEEe
Confidence            7899999999995 999999999999998  344 2211   00   0 0        013688988 588 59999976


Q ss_pred             -CCCCeEEEEECC
Q 010579          218 -RGNQAIREIQLH  229 (507)
Q Consensus       218 -~gn~rIr~I~l~  229 (507)
                       .+..+|.+++++
T Consensus       285 ~~~g~~v~~~~P~  297 (355)
T 3sre_A          285 HPNGMRIFFYDAE  297 (355)
T ss_dssp             ESCHHHHHSCCTT
T ss_pred             cCCceEEEEECCC
Confidence             344455555443

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.46  E-value=1.4e-05  Score=78.54  Aligned_cols=122  Identities=13%  Similarity=0.168  Sum_probs=81.9

Q ss_pred             CCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEE---ecCCCCccccCCCCcccccCCCcceEEEcCCCC-EE
Q 010579           83 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLV---AGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IY  157 (507)
Q Consensus        83 ~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~~v---aG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IY  157 (507)
                      ..|..++++|||. ||+++...++|.+++.+.. .+.+..+   .....+.          .....|.+|++++||+ ||
T Consensus       187 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-~g~~~~~~~~~~~~~~~----------~~~~~~~~i~~spdG~~l~  255 (347)
T 3hfq_A          187 FGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ-TGAFTQLGIVKTIPADY----------TAHNGAAAIRLSHDGHFLY  255 (347)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEEETT-TTEEEEEEEEESSCTTC----------CSCCEEEEEEECTTSCEEE
T ss_pred             CCCceEEECCCCCEEEEEeCCCCEEEEEEecCC-CCceEEeeeeeecCCCC----------CCCCcceeEEECCCCCEEE
Confidence            4799999999998 9999999999888876521 1333222   1111110          1135689999999998 89


Q ss_pred             EEeCCCCeEEEEcC--CC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECC
Q 010579          158 IADTMNMAIRKISD--TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH  229 (507)
Q Consensus       158 VADs~N~rIrk~d~--~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~  229 (507)
                      |++..+++|.+++.  +| +..+.....              .-..|.++++.++...|||++..++.|..++.+
T Consensus       256 v~~~~~~~v~v~~~~~~g~~~~~~~~~~--------------~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          256 VSNRGYNTLAVFAVTADGHLTLIQQIST--------------EGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             EEEETTTEEEEEEECGGGCEEEEEEEEC--------------SSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EEeCCCCEEEEEEECCCCcEEEeEEEec--------------CCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence            99998999998883  34 333321000              012578998644444699999999999888554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.45  E-value=2.8e-06  Score=83.49  Aligned_cols=135  Identities=15%  Similarity=0.178  Sum_probs=95.2

Q ss_pred             CeeEEEEcCCCcEEEEeCC-CCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           84 EPFSVAVSPSGELLVLDSE-NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~-n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      ...++.+.++|+++|++.. +++|+.++++    |+..--.+...+.         ...+..|.+++++++|+++|++..
T Consensus        78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~----Gk~l~~~~~~~~~---------~~~~~~~~~v~~~~~G~~lv~~~~  144 (276)
T 3no2_A           78 EMQTARILPDGNALVAWCGHPSTILEVNMK----GEVLSKTEFETGI---------ERPHAQFRQINKNKKGNYLVPLFA  144 (276)
T ss_dssp             EEEEEEECTTSCEEEEEESTTEEEEEECTT----SCEEEEEEECCSC---------SSGGGSCSCCEECTTSCEEEEETT
T ss_pred             cccccEECCCCCEEEEecCCCCEEEEEeCC----CCEEEEEeccCCC---------CcccccccCceECCCCCEEEEecC
Confidence            4567888999999999998 8999999987    4332222111011         113456889999999999999999


Q ss_pred             CCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceeeCC---
Q 010579          163 NMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNY---  237 (507)
Q Consensus       163 N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~~~---  237 (507)
                      +++|..+|.+|  +.++..+                  ..|.+++ ...+|+++|++..+++|..+++.++......   
T Consensus       145 ~~~v~~~d~~G~~~w~~~~~------------------~~~~~~~-~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~  205 (276)
T 3no2_A          145 TSEVREIAPNGQLLNSVKLS------------------GTPFSSA-FLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAN  205 (276)
T ss_dssp             TTEEEEECTTSCEEEEEECS------------------SCCCEEE-ECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGG
T ss_pred             CCEEEEECCCCCEEEEEECC------------------CCcccee-EcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCC
Confidence            99999999888  3444211                  2466776 4678999999999999999999954443211   


Q ss_pred             -----CCCccceEEEEec
Q 010579          238 -----DDTFHLGIFVLVA  250 (507)
Q Consensus       238 -----~~G~p~gIa~~~~  250 (507)
                           ....|.+++++.+
T Consensus       206 ~~~~~~l~~~~~~~~~~~  223 (276)
T 3no2_A          206 DIEGVQLFFVAQLFPLQN  223 (276)
T ss_dssp             GSBSCCCSEEEEEEECTT
T ss_pred             CCCCccccccccceEcCC
Confidence                 1123667776654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=98.43  E-value=4.9e-06  Score=85.77  Aligned_cols=149  Identities=16%  Similarity=0.129  Sum_probs=94.4

Q ss_pred             CCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC----CCCEEE
Q 010579           83 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD----RGNIYI  158 (507)
Q Consensus        83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~----dGnIYV  158 (507)
                      ..|++|++.+||.|||++...++|++++.++   +....+.+...-.         ......|.||++++    +|.|||
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~---g~~~~v~~~~~v~---------~~g~~GllGia~~Pdf~~~g~lYv   99 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKT---GRKTELGEVPGVS---------PSGEGGLLGIALSPDYASDHMVYA   99 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTT---CCEEEEEECTTCC---------CBTTBSEEEEEECTTHHHHCEEEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCC---CcEeeecccCcee---------ecCCCCceeeEeccccccCCEEEE
Confidence            4799999999999999999889999998752   4444443322100         01245789999998    488999


Q ss_pred             EeC--CCCeEEEEcCCC----------cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEe---------
Q 010579          159 ADT--MNMAIRKISDTG----------VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVID---------  217 (507)
Q Consensus       159 ADs--~N~rIrk~d~~G----------VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD---------  217 (507)
                      +.+  ..++|.++..++          ..+|.-+..          .  ...-....|+ .+.+|.|||+-         
T Consensus       100 ~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p----------~--~~~H~g~~l~-fgpDG~Lyvt~Gd~~~~~~~  166 (347)
T 3das_A          100 YFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIP----------K--GVIHNGGRIA-FGPDKMLYAGTGESGDTGLS  166 (347)
T ss_dssp             EEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEEC----------C--CSSCCCCCEE-ECTTSCEEEECBCTTCGGGT
T ss_pred             EEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCC----------C--CCCccCcccc-CCCCCCEEEEECCCCCCccc
Confidence            865  457888886322          233321110          0  1122455677 48899999993         


Q ss_pred             ----CCCCeEEEEECCCCc---------eeeCCCCCccceEEEEe-cceeEEe
Q 010579          218 ----RGNQAIREIQLHDDD---------CSDNYDDTFHLGIFVLV-AAAFFGY  256 (507)
Q Consensus       218 ----~gn~rIr~I~l~~~~---------~~~~~~~G~p~gIa~~~-~a~~~gy  256 (507)
                          ...++|.+|++++..         -.+..+.-.|.|+++.. +..|+.+
T Consensus       167 qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d  219 (347)
T 3das_A          167 QDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASE  219 (347)
T ss_dssp             TCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEE
T ss_pred             cCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEe
Confidence                246899999988752         11222233477887764 3334444

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.42  E-value=4.7e-05  Score=73.90  Aligned_cols=134  Identities=13%  Similarity=0.171  Sum_probs=90.7

Q ss_pred             CCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEe
Q 010579           83 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIAD  160 (507)
Q Consensus        83 ~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVAD  160 (507)
                      ..|.+++++++|+ ||+++. ++.|.+++...   ++.......+  .    .+     .-..|.+|+++++|+ ||+++
T Consensus       185 ~~~~~~~~s~dg~~l~~~~~-~~~i~~~d~~~---~~~~~~~~~~--~----~~-----~~~~~~~~~~s~dg~~l~~~~  249 (353)
T 3vgz_A          185 KMSTGLALDSEGKRLYTTNA-DGELITIDTAD---NKILSRKKLL--D----DG-----KEHFFINISLDTARQRAFITD  249 (353)
T ss_dssp             TTCCCCEEETTTTEEEEECT-TSEEEEEETTT---TEEEEEEECC--C----SS-----SCCCEEEEEEETTTTEEEEEE
T ss_pred             CccceEEECCCCCEEEEEcC-CCeEEEEECCC---CeEEEEEEcC--C----CC-----CCcccceEEECCCCCEEEEEe
Confidence            3689999999987 777765 78999999862   4433222111  0    01     124678999999998 99999


Q ss_pred             CCCCeEEEEcCC-C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee-C
Q 010579          161 TMNMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD-N  236 (507)
Q Consensus       161 s~N~rIrk~d~~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~-~  236 (507)
                      ..++.|.++|.. +  +.++..                   ..|.++++.++...|||++..++.|..+++.+..... .
T Consensus       250 ~~~~~v~~~d~~~~~~~~~~~~-------------------~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~  310 (353)
T 3vgz_A          250 SKAAEVLVVDTRNGNILAKVAA-------------------PESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF  310 (353)
T ss_dssp             SSSSEEEEEETTTCCEEEEEEC-------------------SSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCCCEEEEEECCCCcEEEEEEc-------------------CCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence            998999999954 3  333321                   1345677655555699999999999999998765443 2


Q ss_pred             CCCCccceEEEEec
Q 010579          237 YDDTFHLGIFVLVA  250 (507)
Q Consensus       237 ~~~G~p~gIa~~~~  250 (507)
                      .....|.++++...
T Consensus       311 ~~~~~~~~~~~s~d  324 (353)
T 3vgz_A          311 DTPTHPNSLALSAD  324 (353)
T ss_dssp             ECCSEEEEEEECTT
T ss_pred             ecCCCCCeEEEcCC
Confidence            22334666665443

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=98.36  E-value=5e-05  Score=78.26  Aligned_cols=126  Identities=15%  Similarity=0.210  Sum_probs=79.9

Q ss_pred             CCeeEEEEcC----CCcEEEEeC--CCCeEEEEeCCCC-----CCCccEEEe-cCCCCccccCCCCcccccCCCcceEEE
Q 010579           83 MEPFSVAVSP----SGELLVLDS--ENSNIYKISTSLS-----PYSRPKLVA-GSPEGYYGHVDGRPRGARMNHPKGLAV  150 (507)
Q Consensus        83 ~~P~gIaVd~----dG~LYVaDs--~n~rI~ki~~~g~-----~~g~i~~va-G~~~G~~G~~dG~~~~a~fn~P~GIaV  150 (507)
                      ..|.+|+++|    +|.|||+.+  ..++|.|+..+..     ......++. +.+.            ........|++
T Consensus        80 ~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~------------~~~H~g~~l~f  147 (347)
T 3das_A           80 GGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPK------------GVIHNGGRIAF  147 (347)
T ss_dssp             BSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECC------------CSSCCCCCEEE
T ss_pred             CCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCC------------CCCccCccccC
Confidence            4689999998    488999764  4579999987641     112233332 2211            01235678999


Q ss_pred             cCCCCEEEEeC-------------CCCeEEEEcCCCcEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEe
Q 010579          151 DDRGNIYIADT-------------MNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVID  217 (507)
Q Consensus       151 d~dGnIYVADs-------------~N~rIrk~d~~GVstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD  217 (507)
                      ++||.|||+-.             ...+|.+|+.+|-  +.-+     ..+.+...-...+.+|+++++ +.+|.||++|
T Consensus       148 gpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~--ip~~-----nPf~~~~i~a~G~RNp~Gla~-dp~G~L~~~d  219 (347)
T 3das_A          148 GPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE--PAPG-----NPFPGSPVYSYGHRNVQGLAW-DDKQRLFASE  219 (347)
T ss_dssp             CTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS--BCTT-----CSSTTCCEEEBCCSBCCEEEE-CTTCCEEEEE
T ss_pred             CCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC--ccCC-----CCCCCCeEEeeCCCCcceEEE-CCCCCEEEEe
Confidence            99999999942             2467999998771  1100     001111111224778999996 6689999999


Q ss_pred             CCCC---eEEEEEC
Q 010579          218 RGNQ---AIREIQL  228 (507)
Q Consensus       218 ~gn~---rIr~I~l  228 (507)
                      .+..   .|.+|..
T Consensus       220 ~g~~~~deln~i~~  233 (347)
T 3das_A          220 FGQDTWDELNAIKP  233 (347)
T ss_dssp             CCSSSCEEEEEECT
T ss_pred             cCCCCCceeeEEcC
Confidence            8764   5666653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.35  E-value=3.1e-06  Score=86.86  Aligned_cols=123  Identities=16%  Similarity=0.071  Sum_probs=83.7

Q ss_pred             CeeEEEEcCCCcEEEEeCCC-CeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeC
Q 010579           84 EPFSVAVSPSGELLVLDSEN-SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT  161 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n-~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs  161 (507)
                      .|.+|++|++|++||+|+.. +.|+|+++++.   .+..+.-.. .         .......++||+++++|+ |+|+|+
T Consensus       138 ~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~---~~~~~~~~~-~---------~~~~~~G~nGIv~~pdg~~Liv~~~  204 (334)
T 2p9w_A          138 GVVQSAQDRDGNSYVAFALGMPAIARVSADGK---TVSTFAWES-G---------NGGQRPGYSGITFDPHSNKLIAFGG  204 (334)
T ss_dssp             EEEEEEECTTSCEEEEEEESSCEEEEECTTSC---CEEEEEECC-C---------CSSSCCSCSEEEEETTTTEEEEESS
T ss_pred             CCceeEECCCCCEEEeCCCCCCeEEEEeCCCC---EEeeeeecC-C---------CcccccCcceEEEeCCCCEEEEEcC
Confidence            48899999999999999999 99999999842   123222111 0         011245688999999997 777777


Q ss_pred             CCCeEEEEcCCC-cE-EEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeE-EEEeCCCCeEEEEECCC
Q 010579          162 MNMAIRKISDTG-VT-TIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSL-LVIDRGNQAIREIQLHD  230 (507)
Q Consensus       162 ~N~rIrk~d~~G-Vs-tIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~L-yVaD~gn~rIr~I~l~~  230 (507)
                       .++|.+||... +. .+.-...|          ....|..|.+|..+..+|.+ +|++..++++...+.++
T Consensus       205 -~g~L~~fD~~~pv~~~v~~~~~G----------~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          205 -PRALTAFDVSKPYAWPEPVKING----------DFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             -SSSEEEEECSSSSCCCEECEESS----------CCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred             -CCeEEEEcCCCCcceeecccccC----------CcccccCcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence             99999999654 22 12100000          01356778886334556666 99998888877777766

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.34  E-value=2.8e-05  Score=77.28  Aligned_cols=156  Identities=10%  Similarity=-0.055  Sum_probs=101.1

Q ss_pred             CcEEEEEeCCCCeEEecCcceEeeCCeeeEEeecCCCCCCCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEE
Q 010579           44 VKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLV  122 (507)
Q Consensus        44 ~~~I~~~d~~t~~i~aG~~~~~~~~G~~~~~~~~G~~~~~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i-~~v  122 (507)
                      .+.|.++|+.++++..              ...-+.  ...+.+++++. +.||+++..+++|.+++...   .++ ..+
T Consensus        43 ~s~v~~iD~~tg~v~~--------------~i~l~~--~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t---~~v~~~i  102 (266)
T 2iwa_A           43 RSSVRQVALQTGKVEN--------------IHKMDD--SYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRT---LSNIKNF  102 (266)
T ss_dssp             TCEEEEEETTTCCEEE--------------EEECCT--TCCEEEEEEET-TEEEEEETTCSEEEEEETTT---TEEEEEE
T ss_pred             CCEEEEEECCCCCEEE--------------EEecCC--CcceEEEEEeC-CEEEEEEecCCEEEEEECCC---CcEEEEE
Confidence            4677777777766551              111111  23567888874 58999999999999999862   222 222


Q ss_pred             ecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCCeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCC
Q 010579          123 AGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFS  199 (507)
Q Consensus       123 aG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~  199 (507)
                      .-   +             ...+.||+.| .+.+||+| +.++|.+||...   +.+|.-+..+            ..+.
T Consensus       103 ~~---g-------------~~~g~glt~D-g~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~------------~p~~  152 (266)
T 2iwa_A          103 TH---Q-------------MKDGWGLATD-GKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNG------------HRVI  152 (266)
T ss_dssp             EC---C-------------SSSCCEEEEC-SSSEEEEC-SSSEEEEECTTTCCEEEEEECEETT------------EECC
T ss_pred             EC---C-------------CCCeEEEEEC-CCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCC------------cccc
Confidence            10   0             0123456654 24699999 688999999766   4455322211            1245


Q ss_pred             CCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceeeCC-CC--------------CccceEEEEecc
Q 010579          200 NDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNY-DD--------------TFHLGIFVLVAA  251 (507)
Q Consensus       200 ~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~~~-~~--------------G~p~gIa~~~~a  251 (507)
                      .|+++.+.  +|.||+.....+.|.+|++.+..+.... ..              .-|+|||...+.
T Consensus       153 ~~nele~~--dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~  217 (266)
T 2iwa_A          153 RLNELEYI--NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQEN  217 (266)
T ss_dssp             CEEEEEEE--TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTT
T ss_pred             cceeEEEE--CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCC
Confidence            68888875  6799999999999999999887764321 11              246799988654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.33  E-value=5.1e-05  Score=75.07  Aligned_cols=125  Identities=10%  Similarity=0.116  Sum_probs=83.1

Q ss_pred             CCCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEE
Q 010579           82 GMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIA  159 (507)
Q Consensus        82 ~~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVA  159 (507)
                      +..|..++++|||. ||+++..+++|.+++.+   .+.+..+.... ..         ...+..|.+|++++||+ ||++
T Consensus       210 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~---~g~~~~~~~~~-~~---------~~~~~~~~~i~~spdg~~l~v~  276 (361)
T 3scy_A          210 GSGPRHLIFNSDGKFAYLINEIGGTVIAFRYA---DGMLDEIQTVA-AD---------TVNAQGSGDIHLSPDGKYLYAS  276 (361)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTCEEEEEEEE---TTEEEEEEEEE-SC---------SSCCCCEEEEEECTTSSEEEEE
T ss_pred             CCCCeEEEEcCCCCEEEEEcCCCCeEEEEEec---CCceEEeEEEe-cC---------CCCCCCcccEEECCCCCEEEEE
Confidence            35799999999996 89999888999999875   24433222110 00         01245788999999998 8999


Q ss_pred             eCC-CCeEEEEcC---CC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEE--CCCCc
Q 010579          160 DTM-NMAIRKISD---TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQ--LHDDD  232 (507)
Q Consensus       160 Ds~-N~rIrk~d~---~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~--l~~~~  232 (507)
                      +.. +++|.+++-   +| +..+.....               -..|.++++.++...||+++..++.|..+.  +.++.
T Consensus       277 ~~~~~~~i~v~~~~~~~g~~~~~~~~~~---------------g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~  341 (361)
T 3scy_A          277 NRLKADGVAIFKVDETNGTLTKVGYQLT---------------GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGL  341 (361)
T ss_dssp             ECSSSCEEEEEEECTTTCCEEEEEEEEC---------------SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCC
T ss_pred             CCCCCCEEEEEEEcCCCCcEEEeeEecC---------------CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCc
Confidence            998 788888663   34 333321000               126788886444445999998889888854  44444


Q ss_pred             ee
Q 010579          233 CS  234 (507)
Q Consensus       233 ~~  234 (507)
                      +.
T Consensus       342 ~~  343 (361)
T 3scy_A          342 LT  343 (361)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.32  E-value=1.1e-05  Score=82.20  Aligned_cols=158  Identities=9%  Similarity=0.081  Sum_probs=90.9

Q ss_pred             CCeeEEEEcCCCcEEEEeCC-------------CCeEEEEeCCCCCCCccEEEecCCCCccccCCC---CcccccCCCcc
Q 010579           83 MEPFSVAVSPSGELLVLDSE-------------NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDG---RPRGARMNHPK  146 (507)
Q Consensus        83 ~~P~gIaVd~dG~LYVaDs~-------------n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG---~~~~a~fn~P~  146 (507)
                      ..|.+|++++||.|||+...             .++|+||+++++.      -.+++  ..+. .+   ..-...+.+|.
T Consensus       130 h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~------p~~np--f~~~-~~~~~~i~a~G~rnp~  200 (353)
T 2g8s_A          130 HFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI------PDDNP--FIKE-SGVRAEIWSYGIRNPQ  200 (353)
T ss_dssp             CCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC------CTTCT--TTTS-TTSCTTEEEECCSEEE
T ss_pred             ccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC------CCCCC--CcCC-CCCCccEEEEcCcCcc
Confidence            56889999999999999633             3689999998431      01111  0010 00   01112478899


Q ss_pred             eEEEcC-CCCEEEEeCCCC---eEEEEcCCCcE---EEecCcccCCCCCCC-----CCccCc------cCCCCceEEEEc
Q 010579          147 GLAVDD-RGNIYIADTMNM---AIRKISDTGVT---TIAGGKWSRGVGHVD-----GPSEDA------KFSNDFDVVYVG  208 (507)
Q Consensus       147 GIaVd~-dGnIYVADs~N~---rIrk~d~~GVs---tIaGG~~g~~~G~~d-----g~~~~a------~f~~P~gIa~vd  208 (507)
                      ||++|+ +|+||++|.+.+   +|.++...+-.   ...++..-.+....+     .+....      ....|.++++..
T Consensus       201 gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~  280 (353)
T 2g8s_A          201 GMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYN  280 (353)
T ss_dssp             EEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEEC
T ss_pred             ceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEEC
Confidence            999999 899999998753   55555443310   001110000000000     000000      113688898754


Q ss_pred             C------CCeEEEEeCCCCeEEEEECCCCceee----C-CCCCccceEEEEe
Q 010579          209 S------SCSLLVIDRGNQAIREIQLHDDDCSD----N-YDDTFHLGIFVLV  249 (507)
Q Consensus       209 ~------~G~LyVaD~gn~rIr~I~l~~~~~~~----~-~~~G~p~gIa~~~  249 (507)
                      .      +|.|||+|..+++|++++++++....    . ...+.|.++++..
T Consensus       281 g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p  332 (353)
T 2g8s_A          281 SDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP  332 (353)
T ss_dssp             CSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECT
T ss_pred             CccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECC
Confidence            3      48999999999999999988643211    1 1123567777654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.26  E-value=4.1e-05  Score=74.13  Aligned_cols=127  Identities=13%  Similarity=0.230  Sum_probs=87.6

Q ss_pred             CCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCcc----EEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-E
Q 010579           83 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRP----KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-I  156 (507)
Q Consensus        83 ~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i----~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-I  156 (507)
                      ..|.+++++++|. ||+++..++.|.+++...   ++.    ..+..                 -..|.+++++++|+ |
T Consensus       176 ~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~---~~~~~~~~~~~~-----------------~~~~~~~~~spdg~~l  235 (331)
T 3u4y_A          176 TRPFNITFTPDGNFAFVANLIGNSIGILETQN---PENITLLNAVGT-----------------NNLPGTIVVSRDGSTV  235 (331)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEECSS---TTSCEEEEEEEC-----------------SSCCCCEEECTTSSEE
T ss_pred             CCccceEECCCCCEEEEEeCCCCeEEEEECCC---CcccceeeeccC-----------------CCCCceEEECCCCCEE
Confidence            5699999999997 999999999999999863   332    22211                 13688999999999 9


Q ss_pred             EEEeCCCCeEEEEcCC-C-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCcee
Q 010579          157 YIADTMNMAIRKISDT-G-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS  234 (507)
Q Consensus       157 YVADs~N~rIrk~d~~-G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~  234 (507)
                      ||++...+.|.+++.. + +..+......  . ..+.    .......++++.++...|||++..++.|..+++....+.
T Consensus       236 ~v~~~~~~~i~~~d~~~~~~~~~~~~~~~--~-~~~~----~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~  308 (331)
T 3u4y_A          236 YVLTESTVDVFNFNQLSGTLSFVKSFGHG--L-LIDP----RPLFGANQMALNKTETKLFISANISRELKVFTISGKVVG  308 (331)
T ss_dssp             EEECSSEEEEEEEETTTTEEEEEEEEECC--C-CCCC----GGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEE
T ss_pred             EEEEcCCCEEEEEECCCCceeeecccccc--c-ccCC----CCcccccceEECCCCCEEEEecCCCCcEEEEEecCCccc
Confidence            9999888899999954 4 3323211000  0 0000    111122567765555679999999999999999877665


Q ss_pred             eC
Q 010579          235 DN  236 (507)
Q Consensus       235 ~~  236 (507)
                      +.
T Consensus       309 ~~  310 (331)
T 3u4y_A          309 YV  310 (331)
T ss_dssp             EC
T ss_pred             ce
Confidence            53

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.21  E-value=9.5e-05  Score=71.54  Aligned_cols=136  Identities=13%  Similarity=0.173  Sum_probs=87.0

Q ss_pred             CeeE-EEEcCCCcEEEEeCCC-C--eEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEE
Q 010579           84 EPFS-VAVSPSGELLVLDSEN-S--NIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYI  158 (507)
Q Consensus        84 ~P~g-IaVd~dG~LYVaDs~n-~--rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYV  158 (507)
                      .|.. ++++++|..+++.... +  .|.+++...   +........                -..|.+++++++|+ ||+
T Consensus        84 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~---~~~~~~~~~----------------~~~~~~~~~spdg~~l~~  144 (331)
T 3u4y_A           84 SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK---NKFISTIPI----------------PYDAVGIAISPNGNGLIL  144 (331)
T ss_dssp             SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTT---TEEEEEEEC----------------CTTEEEEEECTTSSCEEE
T ss_pred             CCccceEECCCCCEEEEecCCCCcccEEEEECCC---CCeEEEEEC----------------CCCccceEECCCCCEEEE
Confidence            5778 9999999843344444 4  999999862   333222211                13578999999997 999


Q ss_pred             EeCCCCe-EEEEc--CCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCC-eEEEEeCCCCeEEEEECCCCce
Q 010579          159 ADTMNMA-IRKIS--DTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDDDC  233 (507)
Q Consensus       159 ADs~N~r-Irk~d--~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G-~LyVaD~gn~rIr~I~l~~~~~  233 (507)
                      ++...+. |.+++  .+| +.... ...-            ..-..|.++++ +++| .|||++..++.|+.+++....+
T Consensus       145 ~~~~~~~~i~~~~~~~~g~~~~~~-~~~~------------~~~~~~~~~~~-spdg~~l~v~~~~~~~v~v~d~~~~~~  210 (331)
T 3u4y_A          145 IDRSSANTVRRFKIDADGVLFDTG-QEFI------------SGGTRPFNITF-TPDGNFAFVANLIGNSIGILETQNPEN  210 (331)
T ss_dssp             EEETTTTEEEEEEECTTCCEEEEE-EEEE------------CSSSSEEEEEE-CTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred             EecCCCceEEEEEECCCCcEeecC-Cccc------------cCCCCccceEE-CCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence            9998777 77665  444 32221 1100            01124788885 5566 5999999999999999987654


Q ss_pred             ---ee-CCCCCccceEEEEecce
Q 010579          234 ---SD-NYDDTFHLGIFVLVAAA  252 (507)
Q Consensus       234 ---~~-~~~~G~p~gIa~~~~a~  252 (507)
                         .. ......|.++++.....
T Consensus       211 ~~~~~~~~~~~~~~~~~~spdg~  233 (331)
T 3u4y_A          211 ITLLNAVGTNNLPGTIVVSRDGS  233 (331)
T ss_dssp             CEEEEEEECSSCCCCEEECTTSS
T ss_pred             cceeeeccCCCCCceEEECCCCC
Confidence               22 22334566777665433

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.20  E-value=0.00028  Score=69.95  Aligned_cols=129  Identities=21%  Similarity=0.293  Sum_probs=89.8

Q ss_pred             CeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeC
Q 010579           84 EPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT  161 (507)
Q Consensus        84 ~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs  161 (507)
                      .+.+++++++|. ||++....+.|++++...   ++........                ..+.+++++++|+ ||++..
T Consensus        75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~---~~~~~~~~~~----------------~~~~~~~~s~dg~~l~~~~~  135 (391)
T 1l0q_A           75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTS---NTVAGTVKTG----------------KSPLGLALSPDGKKLYVTNN  135 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTT---TEEEEEEECS----------------SSEEEEEECTTSSEEEEEET
T ss_pred             CccceEECCCCCEEEEEECCCCEEEEEECCC---CeEEEEEeCC----------------CCcceEEECCCCCEEEEEeC
Confidence            689999999887 888988889999999873   3333222111                2578999999998 779999


Q ss_pred             CCCeEEEEcCC-C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceeeC-C
Q 010579          162 MNMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN-Y  237 (507)
Q Consensus       162 ~N~rIrk~d~~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~~-~  237 (507)
                      .++.|+++|.. +  +.++..+                  ..|.++++.++...||++...++.|+.+++....+... .
T Consensus       136 ~~~~v~~~d~~~~~~~~~~~~~------------------~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~  197 (391)
T 1l0q_A          136 GDKTVSVINTVTKAVINTVSVG------------------RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK  197 (391)
T ss_dssp             TTTEEEEEETTTTEEEEEEECC------------------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             CCCEEEEEECCCCcEEEEEecC------------------CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence            99999999954 3  3333221                  13567776444556889999999999999988765442 2


Q ss_pred             CCCccceEEEEe
Q 010579          238 DDTFHLGIFVLV  249 (507)
Q Consensus       238 ~~G~p~gIa~~~  249 (507)
                      ....+.++++..
T Consensus       198 ~~~~~~~~~~~~  209 (391)
T 1l0q_A          198 VEAAPSGIAVNP  209 (391)
T ss_dssp             CSSEEEEEEECT
T ss_pred             cCCCccceEECC
Confidence            223445555543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.19  E-value=0.00016  Score=71.44  Aligned_cols=144  Identities=13%  Similarity=0.138  Sum_probs=91.2

Q ss_pred             CCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCC----c-cEEE-----ecCCCCccccCCCCcccccCCCcceEEEc
Q 010579           83 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYS----R-PKLV-----AGSPEGYYGHVDGRPRGARMNHPKGLAVD  151 (507)
Q Consensus        83 ~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g----~-i~~v-----aG~~~G~~G~~dG~~~~a~fn~P~GIaVd  151 (507)
                      ..|++++++|+|. ||+++...++|.+++.+... +    . +...     .-.              ..-..|.+++++
T Consensus       155 ~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~-~~~~~~~l~~~~~~~~~~~--------------~~~~~~~~~~~s  219 (361)
T 3scy_A          155 PHLHCVRITPDGKYLLADDLGTDQIHKFNINPNA-NADNKEKFLTKGTPEAFKV--------------APGSGPRHLIFN  219 (361)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTC-CTTTCCCCEEEEEEEEEEC--------------CTTCCEEEEEEC
T ss_pred             CcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCC-Ccccccceeecccccceec--------------CCCCCCeEEEEc
Confidence            3568999999997 99999988999888755211 1    1 1111     000              012468899999


Q ss_pred             CCCC-EEEEeCCCCeEEEEcC-CC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCC-CCeEEEEE
Q 010579          152 DRGN-IYIADTMNMAIRKISD-TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG-NQAIREIQ  227 (507)
Q Consensus       152 ~dGn-IYVADs~N~rIrk~d~-~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~g-n~rIr~I~  227 (507)
                      +||+ |||++..+++|++++. +| +..+.....           ....+..|.+|++.++...||+++.+ .+.|+.++
T Consensus       220 pdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~-----------~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~  288 (361)
T 3scy_A          220 SDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAA-----------DTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFK  288 (361)
T ss_dssp             TTSSEEEEEETTTCEEEEEEEETTEEEEEEEEES-----------CSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEE
T ss_pred             CCCCEEEEEcCCCCeEEEEEecCCceEEeEEEec-----------CCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEE
Confidence            9997 9999988899999984 44 332221000           01123467888864444458999998 89999988


Q ss_pred             CC--CCcee---eCCCCCccceEEEEecce
Q 010579          228 LH--DDDCS---DNYDDTFHLGIFVLVAAA  252 (507)
Q Consensus       228 l~--~~~~~---~~~~~G~p~gIa~~~~a~  252 (507)
                      ++  ++...   .......|.++++.....
T Consensus       289 ~~~~~g~~~~~~~~~~g~~~~~~~~spdg~  318 (361)
T 3scy_A          289 VDETNGTLTKVGYQLTGIHPRNFIITPNGK  318 (361)
T ss_dssp             ECTTTCCEEEEEEEECSSCCCEEEECTTSC
T ss_pred             EcCCCCcEEEeeEecCCCCCceEEECCCCC
Confidence            75  22211   111233577777765543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.17  E-value=6.6e-05  Score=74.78  Aligned_cols=130  Identities=12%  Similarity=0.006  Sum_probs=87.9

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      ...||+++. +.||+++..+++|.++|...   .+. ..+.-.                 ..+.|++.|. +.||++| +
T Consensus        97 FgeGit~~g-~~Ly~ltw~~~~v~V~D~~T---l~~~~ti~~~-----------------~eGwGLt~Dg-~~L~vSd-G  153 (268)
T 3nok_A           97 FAEGLASDG-ERLYQLTWTEGLLFTWSGMP---PQRERTTRYS-----------------GEGWGLCYWN-GKLVRSD-G  153 (268)
T ss_dssp             CEEEEEECS-SCEEEEESSSCEEEEEETTT---TEEEEEEECS-----------------SCCCCEEEET-TEEEEEC-S
T ss_pred             ceeEEEEeC-CEEEEEEccCCEEEEEECCc---CcEEEEEeCC-----------------CceeEEecCC-CEEEEEC-C
Confidence            456788875 48999999999999999862   222 222211                 1345788763 5799999 5


Q ss_pred             CCeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceeeC-C-
Q 010579          163 NMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN-Y-  237 (507)
Q Consensus       163 N~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~~-~-  237 (507)
                      .++|+++|+..   +.+|.-+..+            ..+..++.+.++  +|.||+.....+.|.+||+.++.+... . 
T Consensus       154 s~~l~~iDp~T~~v~~~I~V~~~g------------~~v~~lNeLe~~--dG~lyanvw~s~~I~vIDp~TG~V~~~Idl  219 (268)
T 3nok_A          154 GTMLTFHEPDGFALVGAVQVKLRG------------QPVELINELECA--NGVIYANIWHSSDVLEIDPATGTVVGVIDA  219 (268)
T ss_dssp             SSEEEEECTTTCCEEEEEECEETT------------EECCCEEEEEEE--TTEEEEEETTCSEEEEECTTTCBEEEEEEC
T ss_pred             CCEEEEEcCCCCeEEEEEEeCCCC------------cccccccccEEe--CCEEEEEECCCCeEEEEeCCCCcEEEEEEC
Confidence            88999999765   3444322111            124456677764  779999999999999999988775431 0 


Q ss_pred             -------------CCCccceEEEEec
Q 010579          238 -------------DDTFHLGIFVLVA  250 (507)
Q Consensus       238 -------------~~G~p~gIa~~~~  250 (507)
                                   ....++|||.+.+
T Consensus       220 ~~L~~~~~~~~~~~~~vlNGIA~dp~  245 (268)
T 3nok_A          220 SALTRAVAGQVTNPEAVLNGIAVEPG  245 (268)
T ss_dssp             HHHHHHHTTTCCCTTCCEEEEEECTT
T ss_pred             CCCcccccccccCcCCceEEEEEcCC
Confidence                         1125788988764

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.17  E-value=0.00028  Score=69.85  Aligned_cols=142  Identities=15%  Similarity=0.296  Sum_probs=96.7

Q ss_pred             EEecCCcEEEEEeCCCCeEEecCcceEeeCCeeeEEeecCCCCCCCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCC
Q 010579           39 VVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYS  117 (507)
Q Consensus        39 va~ag~~~I~~~d~~t~~i~aG~~~~~~~~G~~~~~~~~G~~~~~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g  117 (507)
                      ++....+.|+..+..+++..     ..+          .+.   ..|.+++++++|. ||++....+.|+.++...   +
T Consensus         6 vs~~~d~~v~v~d~~~~~~~-----~~~----------~~~---~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~---~   64 (391)
T 1l0q_A            6 IANSESDNISVIDVTSNKVT-----ATI----------PVG---SNPMGAVISPDGTKVYVANAHSNDVSIIDTAT---N   64 (391)
T ss_dssp             EEETTTTEEEEEETTTTEEE-----EEE----------ECS---SSEEEEEECTTSSEEEEEEGGGTEEEEEETTT---T
T ss_pred             EEcCCCCEEEEEECCCCeEE-----EEe----------ecC---CCcceEEECCCCCEEEEECCCCCeEEEEECCC---C
Confidence            34455577777787766544     111          111   2488999999987 778988889999999862   4


Q ss_pred             ccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeCCCCeEEEEcCCC---cEEEecCcccCCCCCCCCCc
Q 010579          118 RPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPS  193 (507)
Q Consensus       118 ~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs~N~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~  193 (507)
                      +........                ..+.+++++++|+ ||++....+.|+++|...   +.++..+             
T Consensus        65 ~~~~~~~~~----------------~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-------------  115 (391)
T 1l0q_A           65 NVIATVPAG----------------SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-------------  115 (391)
T ss_dssp             EEEEEEECS----------------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-------------
T ss_pred             eEEEEEECC----------------CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-------------
Confidence            433322111                1678999999998 889998889999999554   2333211             


Q ss_pred             cCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee
Q 010579          194 EDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD  235 (507)
Q Consensus       194 ~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~  235 (507)
                           ..+.++++.++...||++...++.|+.+++....+..
T Consensus       116 -----~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~  152 (391)
T 1l0q_A          116 -----KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN  152 (391)
T ss_dssp             -----SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             -----CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence                 1356777644444588899989999999988766544

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.16  E-value=4e-05  Score=76.14  Aligned_cols=112  Identities=10%  Similarity=0.088  Sum_probs=79.8

Q ss_pred             CeeEEEEcCCCcEEEEeC--CCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeC
Q 010579           84 EPFSVAVSPSGELLVLDS--ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT  161 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs--~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs  161 (507)
                      .|+||+++++|.||++..  +.+.|.+++..   ++++....-.+.              -..+.|++++. +.||+++.
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~---tg~v~~~i~l~~--------------~~fgeGi~~~g-~~lyv~t~   83 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQ---TGKVENIHKMDD--------------SYFGEGLTLLN-EKLYQVVW   83 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETT---TCCEEEEEECCT--------------TCCEEEEEEET-TEEEEEET
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECC---CCCEEEEEecCC--------------CcceEEEEEeC-CEEEEEEe
Confidence            589999999999999974  47899999987   354433221111              12455888883 58999999


Q ss_pred             CCCeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCce
Q 010579          162 MNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  233 (507)
Q Consensus       162 ~N~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~  233 (507)
                      .+++|.++|...   +.+|.-+ .                ..+.+++  .+.+.|||+| +.++|..|++.+...
T Consensus        84 ~~~~v~viD~~t~~v~~~i~~g-~----------------~~g~glt--~Dg~~l~vs~-gs~~l~viD~~t~~v  138 (266)
T 2iwa_A           84 LKNIGFIYDRRTLSNIKNFTHQ-M----------------KDGWGLA--TDGKILYGSD-GTSILYEIDPHTFKL  138 (266)
T ss_dssp             TCSEEEEEETTTTEEEEEEECC-S----------------SSCCEEE--ECSSSEEEEC-SSSEEEEECTTTCCE
T ss_pred             cCCEEEEEECCCCcEEEEEECC-C----------------CCeEEEE--ECCCEEEEEC-CCCeEEEEECCCCcE
Confidence            999999999665   3444321 0                0234554  4567899999 789999999987553

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.13  E-value=0.00018  Score=70.67  Aligned_cols=154  Identities=13%  Similarity=0.041  Sum_probs=98.8

Q ss_pred             CcEEEEEeCCCCeEEecCcceEeeCCeeeEEeecCCCCCCCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCc-cEEE
Q 010579           44 VKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSR-PKLV  122 (507)
Q Consensus        44 ~~~I~~~d~~t~~i~aG~~~~~~~~G~~~~~~~~G~~~~~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~-i~~v  122 (507)
                      .+.|.++|+.++++..     ..        .++   ......||+++. +.||+++..+++|+++|...   .+ +.++
T Consensus        42 ~S~v~~vD~~tgkv~~-----~~--------~l~---~~~fgeGi~~~~-~~ly~ltw~~~~v~v~D~~t---l~~~~ti  101 (243)
T 3mbr_X           42 RSSVRKVDLETGRILQ-----RA--------EVP---PPYFGAGIVAWR-DRLIQLTWRNHEGFVYDLAT---LTPRARF  101 (243)
T ss_dssp             SCEEEEEETTTCCEEE-----EE--------ECC---TTCCEEEEEEET-TEEEEEESSSSEEEEEETTT---TEEEEEE
T ss_pred             CceEEEEECCCCCEEE-----EE--------eCC---CCcceeEEEEeC-CEEEEEEeeCCEEEEEECCc---CcEEEEE
Confidence            3577777777776551     01        111   012456777764 58999999999999999862   22 2222


Q ss_pred             ecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCCeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCC
Q 010579          123 AGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFS  199 (507)
Q Consensus       123 aG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~  199 (507)
                      .-.                 ..+.||+.| .+.||++|. .++|.++|+..   +.+|.-+..+            ..+.
T Consensus       102 ~~~-----------------~~Gwglt~d-g~~L~vSdg-s~~l~~iDp~t~~~~~~I~V~~~g------------~~~~  150 (243)
T 3mbr_X          102 RYP-----------------GEGWALTSD-DSHLYMSDG-TAVIRKLDPDTLQQVGSIKVTAGG------------RPLD  150 (243)
T ss_dssp             ECS-----------------SCCCEEEEC-SSCEEEECS-SSEEEEECTTTCCEEEEEECEETT------------EECC
T ss_pred             eCC-----------------CCceEEeeC-CCEEEEECC-CCeEEEEeCCCCeEEEEEEEccCC------------cccc
Confidence            211                 135678766 357999995 88999999766   3444322111            1233


Q ss_pred             CCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceeeC---------------CCCCccceEEEEec
Q 010579          200 NDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN---------------YDDTFHLGIFVLVA  250 (507)
Q Consensus       200 ~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~~---------------~~~G~p~gIa~~~~  250 (507)
                      ..+.+.++  +|.||+.....+.|.+||+.++.+...               .....++|||.+..
T Consensus       151 ~lNeLe~~--~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~  214 (243)
T 3mbr_X          151 NLNELEWV--NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAE  214 (243)
T ss_dssp             CEEEEEEE--TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETT
T ss_pred             cceeeEEe--CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCC
Confidence            45666653  789999998899999999998776431               01125788998864

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=98.13  E-value=2.1e-05  Score=85.98  Aligned_cols=121  Identities=22%  Similarity=0.243  Sum_probs=81.2

Q ss_pred             CCCeeEEEEcC-CCcEEEEeCCC---------------------CeEEEEeCCCCC----CCccE--EEecCCCCcc---
Q 010579           82 GMEPFSVAVSP-SGELLVLDSEN---------------------SNIYKISTSLSP----YSRPK--LVAGSPEGYY---  130 (507)
Q Consensus        82 ~~~P~gIaVd~-dG~LYVaDs~n---------------------~rI~ki~~~g~~----~g~i~--~vaG~~~G~~---  130 (507)
                      ...|.+|+++| +|.||++-+.|                     ++|+++...++-    ..+..  +++|.+....   
T Consensus       383 mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~~  462 (592)
T 4a9v_A          383 MDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTP  462 (592)
T ss_dssp             EECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSG
T ss_pred             ccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccccc
Confidence            36899999998 89999996643                     679999764321    11123  3444432111   


Q ss_pred             -ccCCCCcccccCCCcceEEEcCCCCEEE-EeCC-----------CCeEEEEcC-CC-cEEEecCcccCCCCCCCCCccC
Q 010579          131 -GHVDGRPRGARMNHPKGLAVDDRGNIYI-ADTM-----------NMAIRKISD-TG-VTTIAGGKWSRGVGHVDGPSED  195 (507)
Q Consensus       131 -G~~dG~~~~a~fn~P~GIaVd~dGnIYV-ADs~-----------N~rIrk~d~-~G-VstIaGG~~g~~~G~~dg~~~~  195 (507)
                       ....+......|+.|.+|++|++|+||| +|..           |+.|..+++ .| +..++.+.              
T Consensus       463 ~~g~~~~~~~~~fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P--------------  528 (592)
T 4a9v_A          463 KGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP--------------  528 (592)
T ss_dssp             GGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECC--------------
T ss_pred             ccCccCccccCccCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCC--------------
Confidence             0001112235799999999999999999 8863           568999996 45 66665321              


Q ss_pred             ccCCCCceEEEEcCCCeEEEEe
Q 010579          196 AKFSNDFDVVYVGSSCSLLVID  217 (507)
Q Consensus       196 a~f~~P~gIa~vd~~G~LyVaD  217 (507)
                       .+..|+|+++.++...|||+-
T Consensus       529 -~~aEpnGiafSPD~ktLfV~v  549 (592)
T 4a9v_A          529 -IGCEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             -TTCEEEEEEECTTSSEEEEEE
T ss_pred             -CCccccCCEECCCCCEEEEEE
Confidence             134689999877777899884

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.12  E-value=0.00022  Score=70.76  Aligned_cols=131  Identities=11%  Similarity=0.008  Sum_probs=87.7

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCc-cEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSR-PKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~-i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      ...||+++. +.||+++..++++.++|...   .+ +..+.-.                 ..+.|++.| .+.||++|. 
T Consensus        88 FgeGit~~g-~~ly~ltw~~~~v~v~D~~t---~~~~~ti~~~-----------------~eG~glt~d-g~~L~~SdG-  144 (262)
T 3nol_A           88 FGEGISDWK-DKIVGLTWKNGLGFVWNIRN---LRQVRSFNYD-----------------GEGWGLTHN-DQYLIMSDG-  144 (262)
T ss_dssp             CEEEEEEET-TEEEEEESSSSEEEEEETTT---CCEEEEEECS-----------------SCCCCEEEC-SSCEEECCS-
T ss_pred             ceeEEEEeC-CEEEEEEeeCCEEEEEECcc---CcEEEEEECC-----------------CCceEEecC-CCEEEEECC-
Confidence            356788874 48999999999999999862   22 2222211                 034577766 357999995 


Q ss_pred             CCeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceeeC-CC
Q 010579          163 NMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN-YD  238 (507)
Q Consensus       163 N~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~~-~~  238 (507)
                      .++|+++|+..   +.+|.-+..+            ..+..++.+.++  +|.||+.....+.|.+||+.++.+... ..
T Consensus       145 s~~i~~iDp~T~~v~~~I~V~~~g------------~~~~~lNELe~~--~G~lyan~w~~~~I~vIDp~tG~V~~~Id~  210 (262)
T 3nol_A          145 TPVLRFLDPESLTPVRTITVTAHG------------EELPELNELEWV--DGEIFANVWQTNKIVRIDPETGKVTGIIDL  210 (262)
T ss_dssp             SSEEEEECTTTCSEEEEEECEETT------------EECCCEEEEEEE--TTEEEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred             CCeEEEEcCCCCeEEEEEEeccCC------------ccccccceeEEE--CCEEEEEEccCCeEEEEECCCCcEEEEEEC
Confidence            78999999765   3444322111            123455667764  689999999999999999988776431 11


Q ss_pred             -------------CCccceEEEEecc
Q 010579          239 -------------DTFHLGIFVLVAA  251 (507)
Q Consensus       239 -------------~G~p~gIa~~~~a  251 (507)
                                   ...++|||.+.+.
T Consensus       211 ~~L~~~~~~~~~~~~vlNGIA~dp~~  236 (262)
T 3nol_A          211 NGILAEAGPLPSPIDVLNGIAWDKEH  236 (262)
T ss_dssp             TTGGGGSCSCCSSCCCEEEEEEETTT
T ss_pred             CcCccccccccCcCCceEEEEEcCCC
Confidence                         1256889988653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.08  E-value=0.00067  Score=65.06  Aligned_cols=141  Identities=11%  Similarity=0.064  Sum_probs=88.3

Q ss_pred             CCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccE---EEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EE
Q 010579           83 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPK---LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IY  157 (507)
Q Consensus        83 ~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~---~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IY  157 (507)
                      ..|.+++++++|. ||+++..+++|..++.+.. .+...   .+.....+.          .....|.+|+++++|. ||
T Consensus       178 ~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~-~g~~~~~~~~~~~~~~~----------~~~~~~~~i~~s~dg~~l~  246 (343)
T 1ri6_A          178 AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDP-HGNIECVQTLDMMPENF----------SDTRWAADIHITPDGRHLY  246 (343)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEESSCT-TSCCEEEEEEECSCTTC----------CSCCCEEEEEECTTSSEEE
T ss_pred             CCcceEEECCCCCEEEEEeCCCCEEEEEEecCC-CCcEEEEeeccccCccc----------cccCCccceEECCCCCEEE
Confidence            4789999999997 8899988899999997521 13322   111111111          1235688999999996 88


Q ss_pred             EEeCCCCeEEEEcCC---C-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEEC--CCC
Q 010579          158 IADTMNMAIRKISDT---G-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQL--HDD  231 (507)
Q Consensus       158 VADs~N~rIrk~d~~---G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l--~~~  231 (507)
                      |++..++.|.+++.+   + ...+.....               -..|.++++.++...||+++...+.|..++.  .++
T Consensus       247 v~~~~~~~i~v~d~~~~~~~~~~~~~~~~---------------~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g  311 (343)
T 1ri6_A          247 ACDRTASLITVFSVSEDGSVLSKEGFQPT---------------ETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQG  311 (343)
T ss_dssp             EEETTTTEEEEEEECTTSCCEEEEEEEEC---------------SSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTT
T ss_pred             EEecCCCEEEEEEEcCCCCceEEeeeecC---------------CCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCc
Confidence            899888999998843   2 232211000               0136788864444458999988888888744  343


Q ss_pred             ceee---CCCCCccceEEEEe
Q 010579          232 DCSD---NYDDTFHLGIFVLV  249 (507)
Q Consensus       232 ~~~~---~~~~G~p~gIa~~~  249 (507)
                      ....   ......|.+|++..
T Consensus       312 ~~~~~~~~~~g~~p~~i~~~~  332 (343)
T 1ri6_A          312 LLHEKGRYAVGQGPMWVVVNA  332 (343)
T ss_dssp             EEEEEEEEECSSSCCEEEEEE
T ss_pred             eeeEccccccCCCCeeEEEEc
Confidence            2211   12223577777654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.01  E-value=0.00053  Score=67.61  Aligned_cols=79  Identities=9%  Similarity=0.204  Sum_probs=56.9

Q ss_pred             CCCcceEEEcC-CCCEEEEeCCCCeEEEEcCCC-c-EEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeC
Q 010579          142 MNHPKGLAVDD-RGNIYIADTMNMAIRKISDTG-V-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR  218 (507)
Q Consensus       142 fn~P~GIaVd~-dGnIYVADs~N~rIrk~d~~G-V-stIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~  218 (507)
                      +..+.+|++|+ .|.+||....+++|..+|.+| + ..+. -..+  .   .+  ....+..|-||+ +|.+|+|||+..
T Consensus       172 ~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~-L~~g--~---~~--l~~~~~qpEGia-~d~~G~lyIvsE  242 (255)
T 3qqz_A          172 LDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMS-LTKG--S---RG--LSHNIKQAEGVA-MDASGNIYIVSE  242 (255)
T ss_dssp             SSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEE-CSTT--G---GG--CSSCCCSEEEEE-ECTTCCEEEEET
T ss_pred             cCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEE-cCCc--c---CC--cccccCCCCeeE-ECCCCCEEEEcC
Confidence            45789999998 578999999999999999888 3 3221 1100  0   01  123467899999 588999999987


Q ss_pred             CCCeEEEEECCC
Q 010579          219 GNQAIREIQLHD  230 (507)
Q Consensus       219 gn~rIr~I~l~~  230 (507)
                      . |.+++|....
T Consensus       243 ~-n~~y~f~~~~  253 (255)
T 3qqz_A          243 P-NRFYRFTPQS  253 (255)
T ss_dssp             T-TEEEEEEC--
T ss_pred             C-ceEEEEEecC
Confidence            7 4999998653

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=97.97  E-value=0.00037  Score=66.69  Aligned_cols=145  Identities=10%  Similarity=0.075  Sum_probs=88.9

Q ss_pred             EecCCcEEEEEeCCCCeEEecCcceEeeCCeeeEEeecCCCCCCCeeEEEEcCCC-cEEEEeCCCCeEEEEeCCCCCCCc
Q 010579           40 VSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSG-ELLVLDSENSNIYKISTSLSPYSR  118 (507)
Q Consensus        40 a~ag~~~I~~~d~~t~~i~aG~~~~~~~~G~~~~~~~~G~~~~~~P~gIaVd~dG-~LYVaDs~n~rI~ki~~~g~~~g~  118 (507)
                      +....+.|+.+|..+++..     ..+.        .. .. ...|.+++++++| .||+++...+.|.+++...   ++
T Consensus         6 ~~~~~~~v~~~d~~~~~~~-----~~~~--------~~-~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~---~~   67 (337)
T 1pby_B            6 APARPDKLVVIDTEKMAVD-----KVIT--------IA-DA-GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT---GE   67 (337)
T ss_dssp             EEETTTEEEEEETTTTEEE-----EEEE--------CT-TC-TTCCCCEEECTTSSEEEEEETTTTEEEEEETTT---CC
T ss_pred             EcCCCCeEEEEECCCCcEE-----EEEE--------cC-CC-CCCccceEEcCCCCEEEEEeCCCCeEEEEECCC---CC
Confidence            3455678888888776543     1111        11 00 0048899999998 5899999889999999863   33


Q ss_pred             cEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeC-----------CCCeEEEEcCCC---cEEEecCccc
Q 010579          119 PKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT-----------MNMAIRKISDTG---VTTIAGGKWS  183 (507)
Q Consensus       119 i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs-----------~N~rIrk~d~~G---VstIaGG~~g  183 (507)
                      .......+  ..+        ..-..|.+++++++|+ ||+++.           .++.|++++..+   +..+..+   
T Consensus        68 ~~~~~~~~--~~~--------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---  134 (337)
T 1pby_B           68 TLGRIDLS--TPE--------ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP---  134 (337)
T ss_dssp             EEEEEECC--BTT--------EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC---
T ss_pred             eEeeEEcC--Ccc--------cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC---
Confidence            33222111  000        0012588999999995 999863           358899999654   2333211   


Q ss_pred             CCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCce
Q 010579          184 RGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  233 (507)
Q Consensus       184 ~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~  233 (507)
                                     ..|.++++.++...||++   ++.|+.+++.+..+
T Consensus       135 ---------------~~~~~~~~s~dg~~l~~~---~~~i~~~d~~~~~~  166 (337)
T 1pby_B          135 ---------------RQITMLAWARDGSKLYGL---GRDLHVMDPEAGTL  166 (337)
T ss_dssp             ---------------SSCCCEEECTTSSCEEEE---SSSEEEEETTTTEE
T ss_pred             ---------------CCcceeEECCCCCEEEEe---CCeEEEEECCCCcE
Confidence                           136677753333448888   47788888875543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.95  E-value=6.9e-05  Score=79.44  Aligned_cols=121  Identities=16%  Similarity=0.166  Sum_probs=73.8

Q ss_pred             CeeEEEEcC----CCcEEEEeCC------------CCeEEEEeCCCCC--CCccEEEe-cCCCCccccCCCCcccccCCC
Q 010579           84 EPFSVAVSP----SGELLVLDSE------------NSNIYKISTSLSP--YSRPKLVA-GSPEGYYGHVDGRPRGARMNH  144 (507)
Q Consensus        84 ~P~gIaVd~----dG~LYVaDs~------------n~rI~ki~~~g~~--~g~i~~va-G~~~G~~G~~dG~~~~a~fn~  144 (507)
                      .+.+|+++|    +|.|||+++.            .++|.+++.+...  .+...+++ +.+.            .....
T Consensus        78 Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~------------~~~H~  145 (454)
T 1cru_A           78 GLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS------------SKDHQ  145 (454)
T ss_dssp             SEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC------------CSSCC
T ss_pred             ceeEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC------------CCCCC
Confidence            577999999    7899999974            4689999864211  01122232 2110            12356


Q ss_pred             cceEEEcCCCCEEEEeC--C------------------------------CCeEEEEcCCCcEEEecCcccCCCCCCCCC
Q 010579          145 PKGLAVDDRGNIYIADT--M------------------------------NMAIRKISDTGVTTIAGGKWSRGVGHVDGP  192 (507)
Q Consensus       145 P~GIaVd~dGnIYVADs--~------------------------------N~rIrk~d~~GVstIaGG~~g~~~G~~dg~  192 (507)
                      +.+|++++||+|||+-.  +                              ..+|.+|+.+|-  +.-+.... .+ ....
T Consensus       146 ~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~--ip~~Npf~-~~-~~~e  221 (454)
T 1cru_A          146 SGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGS--IPKDNPSF-NG-VVSH  221 (454)
T ss_dssp             EEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSC--CCTTCCEE-TT-EECS
T ss_pred             CCeEeECCCCeEEEEECCCCCCCccccccccccccccccccccccCCCCCCeeEEEEeCCCC--CCCCCCCC-CC-Ccce
Confidence            88999999999999833  2                              257888887771  11000000 00 0000


Q ss_pred             ccCccCCCCceEEEEcCCCeEEEEeCCCC
Q 010579          193 SEDAKFSNDFDVVYVGSSCSLLVIDRGNQ  221 (507)
Q Consensus       193 ~~~a~f~~P~gIa~vd~~G~LyVaD~gn~  221 (507)
                      .-...+.+|+++++ +.+|.||++|.+.+
T Consensus       222 i~a~G~RNp~gla~-dp~G~L~~~d~g~~  249 (454)
T 1cru_A          222 IYTLGHRNPQGLAF-TPNGKLLQSEQGPN  249 (454)
T ss_dssp             EEEBCCSEEEEEEE-CTTSCEEEEEECSS
T ss_pred             EEEECCCCcceEEE-CCCCCEEEEecCCC
Confidence            11123678999996 56899999998654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=97.93  E-value=0.00039  Score=66.71  Aligned_cols=117  Identities=13%  Similarity=0.083  Sum_probs=78.9

Q ss_pred             CeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeC
Q 010579           84 EPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT  161 (507)
Q Consensus        84 ~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs  161 (507)
                      .|.+++++++|. ||+++..++.|..++.+.. .+....+....    .          -..|.+|+++++|+ ||+++.
T Consensus        39 ~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~----~----------~~~~~~~~~s~dg~~l~~~~~  103 (343)
T 1ri6_A           39 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD-DGALTFAAESA----L----------PGSLTHISTDHQGQFVFVGSY  103 (343)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEEECTT-TCCEEEEEEEE----C----------SSCCSEEEECTTSSEEEEEET
T ss_pred             CCceEEECCCCCEEEEeecCCCeEEEEEecCC-CCceeeccccc----c----------CCCCcEEEEcCCCCEEEEEec
Confidence            688999999987 8999887789988776411 13333221110    0          12688999999998 889998


Q ss_pred             CCCeEEEEcC-CC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCC
Q 010579          162 MNMAIRKISD-TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  230 (507)
Q Consensus       162 ~N~rIrk~d~-~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~  230 (507)
                      ..+.|.+++. +|  ...+..-.               ....|.++++.++...||+++...+.|+.+++..
T Consensus       104 ~~~~i~~~d~~~~~~~~~~~~~~---------------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~  160 (343)
T 1ri6_A          104 NAGNVSVTRLEDGLPVGVVDVVE---------------GLDGCHSANISPDNRTLWVPALKQDRICLFTVSD  160 (343)
T ss_dssp             TTTEEEEEEEETTEEEEEEEEEC---------------CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             CCCeEEEEECCCCcccccccccc---------------CCCCceEEEECCCCCEEEEecCCCCEEEEEEecC
Confidence            8888998885 33  11111000               0124677876444456999998889999999876

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=97.91  E-value=0.00071  Score=67.64  Aligned_cols=133  Identities=17%  Similarity=0.148  Sum_probs=80.2

Q ss_pred             CCCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccE----EEecCCCCccccCCCCcccccCCCcceEE-EcCCCC
Q 010579           82 GMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPK----LVAGSPEGYYGHVDGRPRGARMNHPKGLA-VDDRGN  155 (507)
Q Consensus        82 ~~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~----~vaG~~~G~~G~~dG~~~~a~fn~P~GIa-Vd~dGn  155 (507)
                      +..|.+++++|||. ||+++..+++|..++.+.. .|...    .+...+.+..|. .+..  .....|.+|+ +++||+
T Consensus       192 g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-~g~~~~~~~~~~~~~~~~~g~-~~~~--~~~~~~~~i~~~spdG~  267 (365)
T 1jof_A          192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA-THMPVYTHHSFPLIPPGIPDR-DPET--GKGLYRADVCALTFSGK  267 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-TCCEEEEEEEEESSCTTCCCB-CTTT--SSBSEEEEEEEECTTSS
T ss_pred             CCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCC-CCcEEEccceEEcCCCCcCCc-cccc--ccccccccEEEECCCCC
Confidence            34699999999995 8899887788888764311 13322    122111111111 0000  0112588999 999997


Q ss_pred             -EEEEeCCCC-----eEEEEc--CCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEc---CCCeEEEEeCCCCeE
Q 010579          156 -IYIADTMNM-----AIRKIS--DTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVG---SSCSLLVIDRGNQAI  223 (507)
Q Consensus       156 -IYVADs~N~-----rIrk~d--~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd---~~G~LyVaD~gn~rI  223 (507)
                       ||+++...+     +|.+++  .+| +..+......             .-..|.++++.+   +...||+++..++.|
T Consensus       268 ~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~-------------~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v  334 (365)
T 1jof_A          268 YMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT-------------PTSGGHSNAVSPCPWSDEWMAITDDQEGWL  334 (365)
T ss_dssp             EEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC-------------SSCCTTCCCEEECTTCTTEEEEECSSSCEE
T ss_pred             EEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeec-------------CCCCcccceecCCCcCCCEEEEEEcCCCeE
Confidence             899987665     788776  345 4332110000             012456677655   567899999888999


Q ss_pred             EEEECCCC
Q 010579          224 REIQLHDD  231 (507)
Q Consensus       224 r~I~l~~~  231 (507)
                      +.++.+..
T Consensus       335 ~v~~~~~~  342 (365)
T 1jof_A          335 EIYRWKDE  342 (365)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEchh
Confidence            88887655

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.90  E-value=0.00055  Score=67.94  Aligned_cols=123  Identities=16%  Similarity=0.165  Sum_probs=81.2

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      .+++++.|. +.||++|. .++|..+|+.+   .++ ..+.-.   .    +|    ..+..++.+... +|.||++...
T Consensus       128 eG~glt~dg-~~L~~SdG-s~~i~~iDp~T---~~v~~~I~V~---~----~g----~~~~~lNELe~~-~G~lyan~w~  190 (262)
T 3nol_A          128 EGWGLTHND-QYLIMSDG-TPVLRFLDPES---LTPVRTITVT---A----HG----EELPELNELEWV-DGEIFANVWQ  190 (262)
T ss_dssp             CCCCEEECS-SCEEECCS-SSEEEEECTTT---CSEEEEEECE---E----TT----EECCCEEEEEEE-TTEEEEEETT
T ss_pred             CceEEecCC-CEEEEECC-CCeEEEEcCCC---CeEEEEEEec---c----CC----ccccccceeEEE-CCEEEEEEcc
Confidence            466777653 57999995 78999999873   222 222110   0    11    135667778776 7999999999


Q ss_pred             CCeEEEEcC-CC-c-EEEec-CcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECC
Q 010579          163 NMAIRKISD-TG-V-TTIAG-GKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH  229 (507)
Q Consensus       163 N~rIrk~d~-~G-V-stIaG-G~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~  229 (507)
                      .+.|.+||. +| | .+|.- +.... .   .  .......-|+|||+++..++|||+...=-++.+|.+.
T Consensus       191 ~~~I~vIDp~tG~V~~~Id~~~L~~~-~---~--~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~~~  255 (262)
T 3nol_A          191 TNKIVRIDPETGKVTGIIDLNGILAE-A---G--PLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEITLT  255 (262)
T ss_dssp             SSEEEEECTTTCBEEEEEECTTGGGG-S---C--SCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred             CCeEEEEECCCCcEEEEEECCcCccc-c---c--cccCcCCceEEEEEcCCCCEEEEECCCCCceEEEEEe
Confidence            999999995 44 3 44422 11100 0   0  0112345789999988889999999888888888763

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.87  E-value=0.0021  Score=63.12  Aligned_cols=125  Identities=15%  Similarity=0.159  Sum_probs=82.1

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      .+++++-| .+.||++|. .++|..+|+.+   .++ ..+. .  +.    +|    ..+..++.+... +|.||++...
T Consensus       106 ~Gwglt~d-g~~L~vSdg-s~~l~~iDp~t---~~~~~~I~-V--~~----~g----~~~~~lNeLe~~-~G~lyanvw~  168 (243)
T 3mbr_X          106 EGWALTSD-DSHLYMSDG-TAVIRKLDPDT---LQQVGSIK-V--TA----GG----RPLDNLNELEWV-NGELLANVWL  168 (243)
T ss_dssp             CCCEEEEC-SSCEEEECS-SSEEEEECTTT---CCEEEEEE-C--EE----TT----EECCCEEEEEEE-TTEEEEEETT
T ss_pred             CceEEeeC-CCEEEEECC-CCeEEEEeCCC---CeEEEEEE-E--cc----CC----cccccceeeEEe-CCEEEEEECC
Confidence            56788865 358999995 89999999873   222 2221 1  00    11    134566777766 7899999999


Q ss_pred             CCeEEEEcC-CC-c-EEEec-CcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCC
Q 010579          163 NMAIRKISD-TG-V-TTIAG-GKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  230 (507)
Q Consensus       163 N~rIrk~d~-~G-V-stIaG-G~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~  230 (507)
                      .+.|.+||. +| | .+|.- +.... ...    .......-|+|||+++..++|||+...=-++.+|.+..
T Consensus       169 s~~I~vIDp~tG~V~~~idl~~l~~~-~~~----~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~~~~  235 (243)
T 3mbr_X          169 TSRIARIDPASGKVVAWIDLQALVPD-ADA----LTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIRLTP  235 (243)
T ss_dssp             TTEEEEECTTTCBEEEEEECGGGSTT-TTS----CCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEEECC
T ss_pred             CCeEEEEECCCCCEEEEEECCcCccc-ccc----ccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEEEec
Confidence            999999995 45 3 44421 11100 000    00123457899999888899999999888999988753

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=97.84  E-value=0.0013  Score=70.81  Aligned_cols=144  Identities=10%  Similarity=-0.004  Sum_probs=92.9

Q ss_pred             CeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCccccCCCCcccccCCCcceEEEcC----CCC-E
Q 010579           84 EPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD----RGN-I  156 (507)
Q Consensus        84 ~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~----dGn-I  156 (507)
                      .|++++++|||. ||+++.. +.|.+|+.+.. .+++ ..+..      |           ..|.+|++++    ||+ |
T Consensus       180 ~~~~v~~spdg~~l~v~~~d-~~V~v~D~~~~-t~~~~~~i~~------g-----------~~p~~va~sp~~~~dg~~l  240 (543)
T 1nir_A          180 AVHISRMSASGRYLLVIGRD-ARIDMIDLWAK-EPTKVAEIKI------G-----------IEARSVESSKFKGYEDRYT  240 (543)
T ss_dssp             TEEEEEECTTSCEEEEEETT-SEEEEEETTSS-SCEEEEEEEC------C-----------SEEEEEEECCSTTCTTTEE
T ss_pred             ccceEEECCCCCEEEEECCC-CeEEEEECcCC-CCcEEEEEec------C-----------CCcceEEeCCCcCCCCCEE
Confidence            388999999986 8888876 99999998310 1222 22211      1           2589999999    987 9


Q ss_pred             EEEeCCCCeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCce
Q 010579          157 YIADTMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  233 (507)
Q Consensus       157 YVADs~N~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~  233 (507)
                      ||++...+.|.++|...   +.++......     .++. .-..-..+.+|++.++...+||+....+.|+.++.....+
T Consensus       241 ~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~-----~~~~-~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~  314 (543)
T 1nir_A          241 IAGAYWPPQFAIMDGETLEPKQIVSTRGMT-----VDTQ-TYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN  314 (543)
T ss_dssp             EEEEEESSEEEEEETTTCCEEEEEECCEEC-----SSSC-CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSS
T ss_pred             EEEEccCCeEEEEeccccccceeecccCcc-----cCcc-ccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCc
Confidence            99998888999999543   4555431110     0000 0000124567776556778999999999999999876443


Q ss_pred             e---eCCCCCccceEEEEecce
Q 010579          234 S---DNYDDTFHLGIFVLVAAA  252 (507)
Q Consensus       234 ~---~~~~~G~p~gIa~~~~a~  252 (507)
                      .   ......+|.++++.....
T Consensus       315 l~~~~i~~~~~~~~~~~spdg~  336 (543)
T 1nir_A          315 LTVTSIGAAPFLHDGGWDSSHR  336 (543)
T ss_dssp             CEEEEEECCSSCCCEEECTTSC
T ss_pred             ceeEEeccCcCccCceECCCCC
Confidence            2   122234677777765544

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=97.78  E-value=0.00071  Score=65.22  Aligned_cols=145  Identities=15%  Similarity=0.173  Sum_probs=88.9

Q ss_pred             EEecCCcEEEEEeCCCCeEEecCcceEeeCCeeeEEeecCCCCCCCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCC
Q 010579           39 VVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYS  117 (507)
Q Consensus        39 va~ag~~~I~~~d~~t~~i~aG~~~~~~~~G~~~~~~~~G~~~~~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g  117 (507)
                      +.....+.|+.+|..+++..     ..+..         +.  ...|.+++++++|. +|++...++.|++++..+   +
T Consensus        15 v~~~~~~~v~~~d~~~~~~~-----~~~~~---------~~--~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t---~   75 (349)
T 1jmx_B           15 IVTNYPNNLHVVDVASDTVY-----KSCVM---------PD--KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT---C   75 (349)
T ss_dssp             EEEETTTEEEEEETTTTEEE-----EEEEC---------SS--CCSSCEEEECTTSSEEEEEETTTTEEEEEETTT---T
T ss_pred             EEeCCCCeEEEEECCCCcEE-----EEEec---------CC--CCCCceeEECCCCCEEEEEeCCCCcEEEEeCCC---C
Confidence            55566788888888776544     11110         10  01488999999986 899998899999999862   4


Q ss_pred             ccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeCC-----------CCeEEEEcCCC---c---EEEec
Q 010579          118 RPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTM-----------NMAIRKISDTG---V---TTIAG  179 (507)
Q Consensus       118 ~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs~-----------N~rIrk~d~~G---V---stIaG  179 (507)
                      +.......... .        ...-..|.+++++++|+ ||+++..           ++.|.++|...   .   .++..
T Consensus        76 ~~~~~~~~~~~-~--------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~  146 (349)
T 1jmx_B           76 KNTFHANLSSV-P--------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM  146 (349)
T ss_dssp             EEEEEEESCCS-T--------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC
T ss_pred             cEEEEEEcccc-c--------ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC
Confidence            43322211100 0        00123588999999997 8888754           57888888432   1   11110


Q ss_pred             CcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCce
Q 010579          180 GKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  233 (507)
Q Consensus       180 G~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~  233 (507)
                                  +      ..+.++++ +++|.||+++   +.|+.+++.+..+
T Consensus       147 ------------~------~~~~~~~~-s~dg~l~~~~---~~i~~~d~~~~~~  178 (349)
T 1jmx_B          147 ------------P------RQVYLMRA-ADDGSLYVAG---PDIYKMDVKTGKY  178 (349)
T ss_dssp             ------------C------SSCCCEEE-CTTSCEEEES---SSEEEECTTTCCE
T ss_pred             ------------C------CcccceeE-CCCCcEEEcc---CcEEEEeCCCCce
Confidence                        0      13556664 5666677753   3488888766554

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.75  E-value=0.00099  Score=70.29  Aligned_cols=97  Identities=8%  Similarity=0.030  Sum_probs=65.0

Q ss_pred             cEEEEEeCCCCeEEecCcceEeeCCeeeEEeecCCCCCCCeeEEEEcCCCc-EEEEeC---------CCCeEEEEeCCCC
Q 010579           45 KWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDS---------ENSNIYKISTSLS  114 (507)
Q Consensus        45 ~~I~~~d~~t~~i~aG~~~~~~~~G~~~~~~~~G~~~~~~P~gIaVd~dG~-LYVaDs---------~n~rI~ki~~~g~  114 (507)
                      +.|.++|..+.++.              .....    +..| +|+++|||. |||++.         ..+.|.+||... 
T Consensus        99 ~~VsVID~~t~~vv--------------~~I~v----G~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t-  158 (426)
T 3c75_H           99 TQQFVIDGSTGRIL--------------GMTDG----GFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT-  158 (426)
T ss_dssp             EEEEEEETTTTEEE--------------EEEEE----CSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT-
T ss_pred             CeEEEEECCCCEEE--------------EEEEC----CCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC-
Confidence            67777777776655              11111    1369 999999985 999986         356899999863 


Q ss_pred             CCCcc-EEE-ecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeCC-CCeEEEEcCCC
Q 010579          115 PYSRP-KLV-AGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTM-NMAIRKISDTG  173 (507)
Q Consensus       115 ~~g~i-~~v-aG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs~-N~rIrk~d~~G  173 (507)
                        .++ ..+ ++.....          .....|.++++++||. +||++.. .+.|.+||...
T Consensus       159 --~~vv~~I~v~g~~r~----------~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t  209 (426)
T 3c75_H          159 --FLPIADIELPDAPRF----------LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEG  209 (426)
T ss_dssp             --CCEEEEEEETTCCCC----------CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTT
T ss_pred             --CcEEEEEECCCcccc----------ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCC
Confidence              332 222 2211000          0125799999999997 9999875 78999999655

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=97.69  E-value=0.0023  Score=64.14  Aligned_cols=109  Identities=13%  Similarity=0.088  Sum_probs=78.6

Q ss_pred             CeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeC
Q 010579           84 EPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT  161 (507)
Q Consensus        84 ~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs  161 (507)
                      .|.+++++++|. ||++....++|+.++...   ++.......                ...|.+++++++|. ||+++.
T Consensus       304 ~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~---~~~~~~~~~----------------~~~~~~~~~s~dg~~l~~~~~  364 (433)
T 3bws_A          304 NKRHIVSGNTENKIYVSDMCCSKIEVYDLKE---KKVQKSIPV----------------FDKPNTIALSPDGKYLYVSCR  364 (433)
T ss_dssp             CEEEEEECSSTTEEEEEETTTTEEEEEETTT---TEEEEEEEC----------------SSSEEEEEECTTSSEEEEEEC
T ss_pred             CcceEEECCCCCEEEEEecCCCEEEEEECCC---CcEEEEecC----------------CCCCCeEEEcCCCCEEEEEec
Confidence            588999999984 999999999999999862   333322211                13578999999997 888887


Q ss_pred             CCC--------------eEEEEcCC-C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEE
Q 010579          162 MNM--------------AIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIR  224 (507)
Q Consensus       162 ~N~--------------rIrk~d~~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr  224 (507)
                      .++              .|++++.. +  +.++.+                  -..|.++++.++...|++++..++.|+
T Consensus       365 ~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~------------------~~~~~~~~~s~dg~~l~~~~~~d~~i~  426 (433)
T 3bws_A          365 GPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA------------------GNQPTGLDVSPDNRYLVISDFLDHQIR  426 (433)
T ss_dssp             CCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC------------------SSSEEEEEECTTSCEEEEEETTTTEEE
T ss_pred             CCCccccccccccccceEEEEEECCCCcEEEEecC------------------CCCCceEEEcCCCCEEEEEECCCCeEE
Confidence            643              89999954 3  333321                  124678886555556788888889999


Q ss_pred             EEECC
Q 010579          225 EIQLH  229 (507)
Q Consensus       225 ~I~l~  229 (507)
                      .++++
T Consensus       427 v~~~~  431 (433)
T 3bws_A          427 VYRRD  431 (433)
T ss_dssp             EEEET
T ss_pred             EEEec
Confidence            99875

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=97.67  E-value=0.00032  Score=67.69  Aligned_cols=118  Identities=8%  Similarity=0.012  Sum_probs=79.2

Q ss_pred             eeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeCCC
Q 010579           85 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMN  163 (507)
Q Consensus        85 P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs~N  163 (507)
                      ++|+++.+++.+||+...++.|++++...   +++......+              ....|.+++++++|+ +||++..+
T Consensus         2 ~~g~~~~~~~~~~v~~~~~~~v~~~d~~~---~~~~~~~~~~--------------~~~~~~~~~~s~dg~~~~v~~~~~   64 (349)
T 1jmx_B            2 DTGPALKAGHEYMIVTNYPNNLHVVDVAS---DTVYKSCVMP--------------DKFGPGTAMMAPDNRTAYVLNNHY   64 (349)
T ss_dssp             --CCCCCTTCEEEEEEETTTEEEEEETTT---TEEEEEEECS--------------SCCSSCEEEECTTSSEEEEEETTT
T ss_pred             CccccccCCCEEEEEeCCCCeEEEEECCC---CcEEEEEecC--------------CCCCCceeEECCCCCEEEEEeCCC
Confidence            35677888899999999999999999862   4333222111              012488999999997 89999999


Q ss_pred             CeEEEEcCC-C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCC-----------CCeEEEEECC
Q 010579          164 MAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG-----------NQAIREIQLH  229 (507)
Q Consensus       164 ~rIrk~d~~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~g-----------n~rIr~I~l~  229 (507)
                      +.|.+++.. +  +.++..+..         +  ...-..|.++++.++...||+++..           ++.|+.+++.
T Consensus        65 ~~i~~~d~~t~~~~~~~~~~~~---------~--~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~  133 (349)
T 1jmx_B           65 GDIYGIDLDTCKNTFHANLSSV---------P--GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA  133 (349)
T ss_dssp             TEEEEEETTTTEEEEEEESCCS---------T--TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGG
T ss_pred             CcEEEEeCCCCcEEEEEEcccc---------c--ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECC
Confidence            999999954 3  233321110         0  0012357888865445578888854           6899999987


Q ss_pred             C
Q 010579          230 D  230 (507)
Q Consensus       230 ~  230 (507)
                      +
T Consensus       134 ~  134 (349)
T 1jmx_B          134 D  134 (349)
T ss_dssp             G
T ss_pred             C
Confidence            6

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=97.67  E-value=0.0011  Score=66.23  Aligned_cols=130  Identities=18%  Similarity=0.135  Sum_probs=80.1

Q ss_pred             CCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEe
Q 010579           83 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIAD  160 (507)
Q Consensus        83 ~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVAD  160 (507)
                      ..|++++++|||. ||++|.+.++|+.++.+.  .++...+...    ... .      .-..|.++++++||+ |||++
T Consensus       145 ~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~--~g~~~~~~~~----~~~-~------~g~~p~~~~~spdg~~l~v~~  211 (365)
T 1jof_A          145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLA--SGEVELVGSV----DAP-D------PGDHPRWVAMHPTGNYLYALM  211 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECT--TSCEEEEEEE----ECS-S------TTCCEEEEEECTTSSEEEEEE
T ss_pred             CcceEEEECCCCCEEEEEcCCCCEEEEEEECC--CCCEEEeeeE----ecC-C------CCCCCCEeEECCCCCEEEEEE
Confidence            5799999999996 899998889999998751  1333322110    000 0      013699999999996 89999


Q ss_pred             CCCCeEEEEc--C-CC-cE----EEecCcccCCCCCCCCCccCccCCCCceEE-EEcCCCeEEEEeCCCC-----eEEEE
Q 010579          161 TMNMAIRKIS--D-TG-VT----TIAGGKWSRGVGHVDGPSEDAKFSNDFDVV-YVGSSCSLLVIDRGNQ-----AIREI  226 (507)
Q Consensus       161 s~N~rIrk~d--~-~G-Vs----tIaGG~~g~~~G~~dg~~~~a~f~~P~gIa-~vd~~G~LyVaD~gn~-----rIr~I  226 (507)
                      ..+++|.+++  . .| +.    ++.....+. .+. .++..  ....|.+++ +.++...||+++++.+     .|+.+
T Consensus       212 ~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~-~g~-~~~~~--~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~  287 (365)
T 1jof_A          212 EAGNRICEYVIDPATHMPVYTHHSFPLIPPGI-PDR-DPETG--KGLYRADVCALTFSGKYMFASSRANKFELQGYIAGF  287 (365)
T ss_dssp             TTTTEEEEEEECTTTCCEEEEEEEEESSCTTC-CCB-CTTTS--SBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEE
T ss_pred             CCCCeEEEEEEeCCCCcEEEccceEEcCCCCc-CCc-ccccc--cccccccEEEECCCCCEEEEECCCCCCCCCCeEEEE
Confidence            8888888875  2 35 22    121111000 000 00000  122577888 6444446999998766     89999


Q ss_pred             ECC
Q 010579          227 QLH  229 (507)
Q Consensus       227 ~l~  229 (507)
                      +++
T Consensus       288 ~~~  290 (365)
T 1jof_A          288 KLR  290 (365)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            875

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.66  E-value=0.00021  Score=70.56  Aligned_cols=79  Identities=20%  Similarity=0.304  Sum_probs=59.6

Q ss_pred             CCeeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeC
Q 010579           83 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT  161 (507)
Q Consensus        83 ~~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs  161 (507)
                      ..+.+|++|| .|+|||+...+++|..++..    |++.-+.--..|+.|      ....+..|.|||+|++|+|||+.-
T Consensus       173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~----g~~~~~~~L~~g~~~------l~~~~~qpEGia~d~~G~lyIvsE  242 (255)
T 3qqz_A          173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLV----GEVIGEMSLTKGSRG------LSHNIKQAEGVAMDASGNIYIVSE  242 (255)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEECTT----CCEEEEEECSTTGGG------CSSCCCSEEEEEECTTCCEEEEET
T ss_pred             CCceeEEEcCCCCeEEEEECCCCeEEEEcCC----CCEEEEEEcCCccCC------cccccCCCCeeEECCCCCEEEEcC
Confidence            5789999999 78999999999999999997    444433322223322      123478999999999999999965


Q ss_pred             CCCeEEEEcCC
Q 010579          162 MNMAIRKISDT  172 (507)
Q Consensus       162 ~N~rIrk~d~~  172 (507)
                      .| .+++|...
T Consensus       243 ~n-~~y~f~~~  252 (255)
T 3qqz_A          243 PN-RFYRFTPQ  252 (255)
T ss_dssp             TT-EEEEEEC-
T ss_pred             Cc-eEEEEEec
Confidence            54 89999753

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.65  E-value=0.0034  Score=64.25  Aligned_cols=109  Identities=8%  Similarity=-0.030  Sum_probs=69.0

Q ss_pred             CeeEEEEcCCCc-EEEEeC---------CCCeEEEEeCCCCCCCcc-EEE-ecCCCCccccCCCCcccccCCCcceEEEc
Q 010579           84 EPFSVAVSPSGE-LLVLDS---------ENSNIYKISTSLSPYSRP-KLV-AGSPEGYYGHVDGRPRGARMNHPKGLAVD  151 (507)
Q Consensus        84 ~P~gIaVd~dG~-LYVaDs---------~n~rI~ki~~~g~~~g~i-~~v-aG~~~G~~G~~dG~~~~a~fn~P~GIaVd  151 (507)
                      .| +|+++|||. |||++.         ..+.|.+|+...   .++ ..+ ++..        +  .......|.+++++
T Consensus        68 ~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t---~~~~~~i~~~~~--------~--~~~~g~~p~~~~~s  133 (373)
T 2mad_H           68 LP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT---FLPIADIELPDA--------P--RFDVGPYSWMNANT  133 (373)
T ss_pred             CC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC---CcEEEEEECCCc--------c--ccccCCCccceEEC
Confidence            58 999999985 999985         246789998752   221 111 1100        0  00012479999999


Q ss_pred             CCCC-EEEEeCC-CCeEEEEcCCC---cEE-EecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEE
Q 010579          152 DRGN-IYIADTM-NMAIRKISDTG---VTT-IAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIRE  225 (507)
Q Consensus       152 ~dGn-IYVADs~-N~rIrk~d~~G---Vst-IaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~  225 (507)
                      +||+ |||+... .+.|.+|| ..   +.+ +.                     .|.++.+.+....+|++....+++..
T Consensus       134 pDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~---------------------~~~~~~~~~~~~~~~~~~~~dg~~~~  191 (373)
T 2mad_H          134 PNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS---------------------SPTCYHIHPGAPSTFYLLCAQGGLAK  191 (373)
T ss_pred             CCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC---------------------CCceEEEEeCCCceEEEEcCCCCEEE
Confidence            9998 9999865 68899999 65   223 21                     12223334455566777777777777


Q ss_pred             EEC
Q 010579          226 IQL  228 (507)
Q Consensus       226 I~l  228 (507)
                      |+.
T Consensus       192 vd~  194 (373)
T 2mad_H          192 TDH  194 (373)
T ss_pred             EEC
Confidence            776

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=97.58  E-value=0.0052  Score=61.54  Aligned_cols=130  Identities=16%  Similarity=0.138  Sum_probs=85.3

Q ss_pred             CeeEEEEcCCCc-EEEEeC-------CCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC
Q 010579           84 EPFSVAVSPSGE-LLVLDS-------ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN  155 (507)
Q Consensus        84 ~P~gIaVd~dG~-LYVaDs-------~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn  155 (507)
                      .|.+++++++|. |+++..       .++.|+.++...   +......+.                -..|.+++++++|+
T Consensus       255 ~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~---~~~~~~~~~----------------~~~~~~~~~~~~g~  315 (433)
T 3bws_A          255 LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK---EKLIDTIGP----------------PGNKRHIVSGNTEN  315 (433)
T ss_dssp             EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTT---TEEEEEEEE----------------EECEEEEEECSSTT
T ss_pred             CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCC---CcEEeeccC----------------CCCcceEEECCCCC
Confidence            589999999985 666664       356899999762   333222211                12577999999995


Q ss_pred             -EEEEeCCCCeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCC-----------
Q 010579          156 -IYIADTMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN-----------  220 (507)
Q Consensus       156 -IYVADs~N~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn-----------  220 (507)
                       ||++...+++|++++...   +.++..                  ...|.++++.++...||+++..+           
T Consensus       316 ~l~~~~~~~~~v~v~d~~~~~~~~~~~~------------------~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g  377 (433)
T 3bws_A          316 KIYVSDMCCSKIEVYDLKEKKVQKSIPV------------------FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKG  377 (433)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEEC------------------SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCC
T ss_pred             EEEEEecCCCEEEEEECCCCcEEEEecC------------------CCCCCeEEEcCCCCEEEEEecCCCcccccccccc
Confidence             999999999999999654   233311                  12466787644444688888764           


Q ss_pred             ---CeEEEEECCCCceeeC-CCCCccceEEEEec
Q 010579          221 ---QAIREIQLHDDDCSDN-YDDTFHLGIFVLVA  250 (507)
Q Consensus       221 ---~rIr~I~l~~~~~~~~-~~~G~p~gIa~~~~  250 (507)
                         +.|+.+++....+... .....+.++++...
T Consensus       378 ~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~d  411 (433)
T 3bws_A          378 LVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPD  411 (433)
T ss_dssp             SSCCEEEEEETTTTEEEEEEECSSSEEEEEECTT
T ss_pred             ccceEEEEEECCCCcEEEEecCCCCCceEEEcCC
Confidence               4899999877654432 22334556665443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.57  E-value=0.003  Score=65.88  Aligned_cols=143  Identities=10%  Similarity=0.018  Sum_probs=88.0

Q ss_pred             ceEeEEEecC----CcEEEEEeCCCCeEEecCcceEeeCCeeeEEeecCCCCCCCeeEEEEcCCCc-EEEEeC-------
Q 010579           34 GIVSNVVSAL----VKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDS-------  101 (507)
Q Consensus        34 G~l~~va~ag----~~~I~~~d~~t~~i~aG~~~~~~~~G~~~~~~~~G~~~~~~P~gIaVd~dG~-LYVaDs-------  101 (507)
                      +....+++..    .+.|+++|..+.++.     ..+.         .    +..|. |+++|||. |||++.       
T Consensus        44 ~~~vyV~~~~~~~~~~~V~ViD~~t~~v~-----~~I~---------v----G~~P~-va~spDG~~lyVan~~~~r~~~  104 (386)
T 3sjl_D           44 ARRVYVNDPAHFAAVTQQFVIDGEAGRVI-----GMID---------G----GFLPN-PVVADDGSFIAHASTVFSRIAR  104 (386)
T ss_dssp             TTEEEEEECGGGCSSEEEEEEETTTTEEE-----EEEE---------E----CSSCE-EEECTTSSCEEEEEEEEEETTE
T ss_pred             CCEEEEEcCcccCCCCEEEEEECCCCeEE-----EEEE---------C----CCCCc-EEECCCCCEEEEEccccccccc
Confidence            4444466654    578888888887765     1111         1    23585 99999986 999985       


Q ss_pred             --CCCeEEEEeCCCCCCCcc-EEE-ecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeCC-CCeEEEEcCCC--
Q 010579          102 --ENSNIYKISTSLSPYSRP-KLV-AGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTM-NMAIRKISDTG--  173 (507)
Q Consensus       102 --~n~rI~ki~~~g~~~g~i-~~v-aG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs~-N~rIrk~d~~G--  173 (507)
                        ..+.|.+||..+   .++ ..+ ++.+..  .        ..-..|.++++++||. +||++.. .+.|.+||...  
T Consensus       105 G~~~~~VsviD~~t---~~v~~~I~v~~g~r--~--------~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~  171 (386)
T 3sjl_D          105 GERTDYVEVFDPVT---LLPTADIELPDAPR--F--------LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA  171 (386)
T ss_dssp             EEEEEEEEEECTTT---CCEEEEEEETTCCC--C--------CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred             CCCCCEEEEEECCC---CeEEEEEECCCccc--c--------ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCc
Confidence              246799999873   332 222 221100  0        0124799999999998 9999874 78999999654  


Q ss_pred             -cEEEec-CcccCCCCCCCCCccCccCCCCce---EEEEcCCCeEEEEeCCC-CeE
Q 010579          174 -VTTIAG-GKWSRGVGHVDGPSEDAKFSNDFD---VVYVGSSCSLLVIDRGN-QAI  223 (507)
Q Consensus       174 -VstIaG-G~~g~~~G~~dg~~~~a~f~~P~g---Ia~vd~~G~LyVaD~gn-~rI  223 (507)
                       +.+|.- +..               ...|.+   .+.+..+|.+++.|... +++
T Consensus       172 vv~tI~v~g~~---------------~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v  212 (386)
T 3sjl_D          172 FKRMLDVPDCY---------------HIFPTAPDTFFMHCRDGSLAKVAFGTEGTP  212 (386)
T ss_dssp             EEEEEECCSEE---------------EEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred             EEEEEECCCcc---------------eeecCCCceeEEECCCCCEEEEECCCCCeE
Confidence             455532 110               112333   12345677777777764 565

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.56  E-value=0.00088  Score=66.70  Aligned_cols=108  Identities=13%  Similarity=0.137  Sum_probs=76.9

Q ss_pred             eeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCC
Q 010579           85 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM  164 (507)
Q Consensus        85 P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~  164 (507)
                      -.||.++ ++.||++....++|+++++..   +++..-. .+...              ...||+++. +.||+++..++
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~T---gkv~~~~-l~~~~--------------FgeGit~~g-~~Ly~ltw~~~  116 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLES---AQPVWME-RLGNI--------------FAEGLASDG-ERLYQLTWTEG  116 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSC---SSCSEEE-ECTTC--------------CEEEEEECS-SCEEEEESSSC
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCC---CcEEeEE-CCCCc--------------ceeEEEEeC-CEEEEEEccCC
Confidence            4799998 479999999999999999873   4432222 11111              234788874 47999999999


Q ss_pred             eEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCce
Q 010579          165 AIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  233 (507)
Q Consensus       165 rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~  233 (507)
                      ++.++|...   +.+|.-.                  ..+++++.  +.+.||++| +.++|+.||+.+...
T Consensus       117 ~v~V~D~~Tl~~~~ti~~~------------------~eGwGLt~--Dg~~L~vSd-Gs~~l~~iDp~T~~v  167 (268)
T 3nok_A          117 LLFTWSGMPPQRERTTRYS------------------GEGWGLCY--WNGKLVRSD-GGTMLTFHEPDGFAL  167 (268)
T ss_dssp             EEEEEETTTTEEEEEEECS------------------SCCCCEEE--ETTEEEEEC-SSSEEEEECTTTCCE
T ss_pred             EEEEEECCcCcEEEEEeCC------------------CceeEEec--CCCEEEEEC-CCCEEEEEcCCCCeE
Confidence            999999765   3444321                  13467763  467999999 689999999887543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=97.50  E-value=0.0048  Score=67.16  Aligned_cols=99  Identities=10%  Similarity=0.056  Sum_probs=67.9

Q ss_pred             EEecCCcEEEEEeCCCCeEEecCcceEeeCCeeeEEeecCCCCCCCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCC
Q 010579           39 VVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYS  117 (507)
Q Consensus        39 va~ag~~~I~~~d~~t~~i~aG~~~~~~~~G~~~~~~~~G~~~~~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g  117 (507)
                      ++....+.|+.+|..++++.     ..+..             +..|+++++++||. |||++. .+.|.+|+.......
T Consensus       171 V~~~~~~~V~viD~~t~~v~-----~~i~~-------------g~~p~~v~~SpDGr~lyv~~~-dg~V~viD~~~~t~~  231 (567)
T 1qks_A          171 VTLRDAGQIALIDGSTYEIK-----TVLDT-------------GYAVHISRLSASGRYLFVIGR-DGKVNMIDLWMKEPT  231 (567)
T ss_dssp             EEETTTTEEEEEETTTCCEE-----EEEEC-------------SSCEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCC
T ss_pred             EEeCCCCeEEEEECCCCeEE-----EEEeC-------------CCCccceEECCCCCEEEEEcC-CCeEEEEECCCCCCc
Confidence            66667788888888777655     11111             23689999999986 788864 679999998300001


Q ss_pred             ccEEEecCCCCccccCCCCcccccCCCcceEEEc----CCCC-EEEEeCCCCeEEEEcCCC
Q 010579          118 RPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVD----DRGN-IYIADTMNMAIRKISDTG  173 (507)
Q Consensus       118 ~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd----~dGn-IYVADs~N~rIrk~d~~G  173 (507)
                      .+..+..      |           ..|.+|+++    +||. +||++...+.|.+||...
T Consensus       232 ~v~~i~~------G-----------~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t  275 (567)
T 1qks_A          232 TVAEIKI------G-----------SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET  275 (567)
T ss_dssp             EEEEEEC------C-----------SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred             EeEEEec------C-----------CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence            1222211      1           258999999    5886 999999999999999544

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.43  E-value=0.0013  Score=68.05  Aligned_cols=112  Identities=5%  Similarity=-0.054  Sum_probs=72.9

Q ss_pred             CeeEEEEcCCC-cEEEEeC---------CCCeEEEEeCCCCCCCcc-EEE-ecCCCCccccCCCCcccccCCCcceEEEc
Q 010579           84 EPFSVAVSPSG-ELLVLDS---------ENSNIYKISTSLSPYSRP-KLV-AGSPEGYYGHVDGRPRGARMNHPKGLAVD  151 (507)
Q Consensus        84 ~P~gIaVd~dG-~LYVaDs---------~n~rI~ki~~~g~~~g~i-~~v-aG~~~G~~G~~dG~~~~a~fn~P~GIaVd  151 (507)
                      .| +|++++|| .|||++.         ..+.|.+||+..   +++ ..+ +|.+.+          ......|.+|+++
T Consensus        67 ~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T---~~vv~~I~v~~~~~----------~~~g~~P~~ia~S  132 (368)
T 1mda_H           67 LS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT---FLPIADIELPDAPR----------FSVGPRVHIIGNC  132 (368)
T ss_dssp             TC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT---CCEEEEEEETTSCS----------CCBSCCTTSEEEC
T ss_pred             CC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC---CCEEEEEECCCccc----------cccCCCcceEEEc
Confidence            69 99999988 5999984         357899999873   332 233 221100          0112579999999


Q ss_pred             CCCC-EEEEeCC-CCeEEE--EcCCCcEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEE
Q 010579          152 DRGN-IYIADTM-NMAIRK--ISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQ  227 (507)
Q Consensus       152 ~dGn-IYVADs~-N~rIrk--~d~~GVstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~  227 (507)
                      +||. +||++.. .+.|.+  ||...+.+|.-+      +    .         ..+  .+....+|++....+++..++
T Consensus       133 pDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~------~----~---------~~~--~p~g~~~~~~~~~dg~~~~vd  191 (368)
T 1mda_H          133 ASSACLLFFLFGSSAAAGLSVPGASDDQLTKSA------S----C---------FHI--HPGAAATHYLGSCPASLAASD  191 (368)
T ss_dssp             TTSSCEEEEECSSSCEEEEEETTTEEEEEEECS------S----C---------CCC--EEEETTEEECCCCTTSCEEEE
T ss_pred             CCCCEEEEEccCCCCeEEEEEEchhhceEEECC------C----c---------eEE--ccCCCeEEEEEcCCCCEEEEE
Confidence            9996 9999876 677888  886555555311      0    0         011  234456777777777777777


Q ss_pred             CCC
Q 010579          228 LHD  230 (507)
Q Consensus       228 l~~  230 (507)
                      +..
T Consensus       192 ~~~  194 (368)
T 1mda_H          192 LAA  194 (368)
T ss_dssp             CCS
T ss_pred             Ccc
Confidence            764

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.40  E-value=0.0012  Score=69.01  Aligned_cols=115  Identities=17%  Similarity=0.152  Sum_probs=76.5

Q ss_pred             cCCC-cEEEEeCC----CCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeCC--
Q 010579           91 SPSG-ELLVLDSE----NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTM--  162 (507)
Q Consensus        91 d~dG-~LYVaDs~----n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs~--  162 (507)
                      .|+| .|||+|..    .++|.+||...   +++...+-.     |           ..| +|++++||. +||+++.  
T Consensus        41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t---~~v~~~I~v-----G-----------~~P-~va~spDG~~lyVan~~~~  100 (386)
T 3sjl_D           41 APDARRVYVNDPAHFAAVTQQFVIDGEA---GRVIGMIDG-----G-----------FLP-NPVVADDGSFIAHASTVFS  100 (386)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTT---TEEEEEEEE-----C-----------SSC-EEEECTTSSCEEEEEEEEE
T ss_pred             CCCCCEEEEEcCcccCCCCEEEEEECCC---CeEEEEEEC-----C-----------CCC-cEEECCCCCEEEEEccccc
Confidence            4565 59999986    68999999862   333222211     1           247 499999998 9999852  


Q ss_pred             -------CCeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCC-CCeEEEEECCCC
Q 010579          163 -------NMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG-NQAIREIQLHDD  231 (507)
Q Consensus       163 -------N~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~g-n~rIr~I~l~~~  231 (507)
                             .+.|.+||...   +.+|.-+.         |.. ...-..|.++++.++...|||++.. .+.|..||+.+.
T Consensus       101 r~~~G~~~~~VsviD~~t~~v~~~I~v~~---------g~r-~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~  170 (386)
T 3sjl_D          101 RIARGERTDYVEVFDPVTLLPTADIELPD---------APR-FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK  170 (386)
T ss_dssp             ETTEEEEEEEEEEECTTTCCEEEEEEETT---------CCC-CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT
T ss_pred             ccccCCCCCEEEEEECCCCeEEEEEECCC---------ccc-cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCC
Confidence                   45699999655   34442110         000 0012378999976666679999975 799999999887


Q ss_pred             ceee
Q 010579          232 DCSD  235 (507)
Q Consensus       232 ~~~~  235 (507)
                      ....
T Consensus       171 ~vv~  174 (386)
T 3sjl_D          171 AFKR  174 (386)
T ss_dssp             EEEE
T ss_pred             cEEE
Confidence            6543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=97.33  E-value=0.013  Score=59.09  Aligned_cols=81  Identities=10%  Similarity=0.121  Sum_probs=52.7

Q ss_pred             EEEcCCCC-EEEEeC----------CCCeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeE
Q 010579          148 LAVDDRGN-IYIADT----------MNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSL  213 (507)
Q Consensus       148 IaVd~dGn-IYVADs----------~N~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~L  213 (507)
                      ++++++|+ +||+..          ..+.|.+||...   +.++..+                  . |.+|++.++...|
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~------------------~-p~~ia~spdg~~l  319 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR------------------D-ALSMTIDQQRNLM  319 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT------------------T-CCEEEEETTTTEE
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC------------------C-eeEEEECCCCCEE
Confidence            77777644 777653          134677777543   3333211                  1 8899987666788


Q ss_pred             EEEeCCCCeEEEEECCCC--ceeeC-CC-CCccceEEEEe
Q 010579          214 LVIDRGNQAIREIQLHDD--DCSDN-YD-DTFHLGIFVLV  249 (507)
Q Consensus       214 yVaD~gn~rIr~I~l~~~--~~~~~-~~-~G~p~gIa~~~  249 (507)
                      |+++.  +.|..|+..+.  .+... .. ...|.++++.-
T Consensus       320 ~v~n~--~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p  357 (361)
T 2oiz_A          320 LTLDG--GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHP  357 (361)
T ss_dssp             EEECS--SCEEEEECSSSSCEEEEEETTSCSSEEEEEECC
T ss_pred             EEeCC--CeEEEEECCCCcceeeEEeccCCCCcEEEEecC
Confidence            98885  99999999887  65443 23 34678887654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.32  E-value=0.0015  Score=68.98  Aligned_cols=109  Identities=13%  Similarity=0.099  Sum_probs=74.7

Q ss_pred             cEEEEeCCC----CeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeC--------
Q 010579           95 ELLVLDSEN----SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT--------  161 (507)
Q Consensus        95 ~LYVaDs~n----~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs--------  161 (507)
                      .+||++...    +.|.+||...   .++...+-.     |           ..| ||++++||+ |||+++        
T Consensus        86 ~vyV~n~~~~~~~~~VsVID~~t---~~vv~~I~v-----G-----------~~P-gia~SpDgk~lyVan~~~~~~~~G  145 (426)
T 3c75_H           86 RVYIQDPAHFAAITQQFVIDGST---GRILGMTDG-----G-----------FLP-HPVAAEDGSFFAQASTVFERIARG  145 (426)
T ss_dssp             EEEEEECTTTCSSEEEEEEETTT---TEEEEEEEE-----C-----------SSC-EEEECTTSSCEEEEEEEEEETTEE
T ss_pred             EEEEECCCcCCCCCeEEEEECCC---CEEEEEEEC-----C-----------CCC-ceEECCCCCEEEEEeccccccccC
Confidence            599999865    7999999862   333221111     1           258 999999997 999986        


Q ss_pred             -CCCeEEEEcCCC---cEEEe-cCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCC-CCeEEEEECCCCcee
Q 010579          162 -MNMAIRKISDTG---VTTIA-GGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG-NQAIREIQLHDDDCS  234 (507)
Q Consensus       162 -~N~rIrk~d~~G---VstIa-GG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~g-n~rIr~I~l~~~~~~  234 (507)
                       ..+.|.+||...   +.+|. ++..           .......|.++++.++...|||++.. .+.|.+||+......
T Consensus       146 ~~~~~VsviD~~t~~vv~~I~v~g~~-----------r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv  213 (426)
T 3c75_H          146 KRTDYVEVFDPVTFLPIADIELPDAP-----------RFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFD  213 (426)
T ss_dssp             EEEEEEEEECTTTCCEEEEEEETTCC-----------CCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred             CCCCEEEEEECCCCcEEEEEECCCcc-----------ccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEE
Confidence             355799999654   44443 2110           00012468899876566689999975 799999999886654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.31  E-value=0.0094  Score=60.94  Aligned_cols=83  Identities=11%  Similarity=0.146  Sum_probs=52.5

Q ss_pred             EEEcCCCC-EEEEeC---------CCCeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCC-eE
Q 010579          148 LAVDDRGN-IYIADT---------MNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SL  213 (507)
Q Consensus       148 IaVd~dGn-IYVADs---------~N~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G-~L  213 (507)
                      ++++++|+ |||+..         ..+.|.+||...   +.+|..+                  ..|.+|++..+.. .|
T Consensus       272 ~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g------------------~~p~~i~~s~Dg~~~l  333 (373)
T 2mad_H          272 VAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG------------------HDVDAISVAQDGGPDL  333 (373)
T ss_pred             EEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC------------------CCcCeEEECCCCCeEE
Confidence            67777654 777643         234677777544   3444221                  1588998644444 47


Q ss_pred             EEEeCCCCeEEEEECCCCceeeC-CC-CCccceEEEE
Q 010579          214 LVIDRGNQAIREIQLHDDDCSDN-YD-DTFHLGIFVL  248 (507)
Q Consensus       214 yVaD~gn~rIr~I~l~~~~~~~~-~~-~G~p~gIa~~  248 (507)
                      |++..+.+.|..|+..+...... .. ...|.+|...
T Consensus       334 ~v~~~~~~~V~ViD~~t~~vv~~i~~vG~~P~~~~~~  370 (373)
T 2mad_H          334 YALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVM  370 (373)
T ss_pred             EEEcCCCCeEEEEECCCCCEEeeecCCCCCCcEEEEc
Confidence            88887899999999988665543 22 3357766654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=97.29  E-value=0.015  Score=62.32  Aligned_cols=127  Identities=13%  Similarity=0.073  Sum_probs=85.0

Q ss_pred             CCCeeEEEEcC----CCc-EEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCccccCCCCcccccCCCcceEEEcCCCC
Q 010579           82 GMEPFSVAVSP----SGE-LLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN  155 (507)
Q Consensus        82 ~~~P~gIaVd~----dG~-LYVaDs~n~rI~ki~~~g~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn  155 (507)
                      +..|.+|+++|    ||. ||+++...+.|..++...   +++ .++...+  ...  ++.. -..-..+.+|+++++|.
T Consensus       221 g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t---~~~~~~i~~~g--~~~--~~~~-~~~~~~v~~i~~s~~~~  292 (543)
T 1nir_A          221 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET---LEPKQIVSTRG--MTV--DTQT-YHPEPRVAAIIASHEHP  292 (543)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT---CCEEEEEECCE--ECS--SSCC-EESCCCEEEEEECSSSS
T ss_pred             CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc---cccceeecccC--ccc--Cccc-cccCCceEEEEECCCCC
Confidence            35799999999    886 888887788999998752   333 2332211  100  1000 00012577999999765


Q ss_pred             -EEEEeCCCCeEEEEcCCC---c--EEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCe-EEEEeCCCCeEEEEEC
Q 010579          156 -IYIADTMNMAIRKISDTG---V--TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCS-LLVIDRGNQAIREIQL  228 (507)
Q Consensus       156 -IYVADs~N~rIrk~d~~G---V--stIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~-LyVaD~gn~rIr~I~l  228 (507)
                       +||+....++|..++...   +  +++..+                  ..|.++++ +++|+ ||++....+.|..+++
T Consensus       293 ~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~------------------~~~~~~~~-spdg~~l~va~~~~~~v~v~D~  353 (543)
T 1nir_A          293 EFIVNVKETGKVLLVNYKDIDNLTVTSIGAA------------------PFLHDGGW-DSSHRYFMTAANNSNKVAVIDS  353 (543)
T ss_dssp             EEEEEETTTTEEEEEECTTSSSCEEEEEECC------------------SSCCCEEE-CTTSCEEEEEEGGGTEEEEEET
T ss_pred             EEEEEECCCCeEEEEEecCCCcceeEEeccC------------------cCccCceE-CCCCCEEEEEecCCCeEEEEEC
Confidence             888888899999999433   2  243211                  25778886 55554 8999998999999999


Q ss_pred             CCCceee
Q 010579          229 HDDDCSD  235 (507)
Q Consensus       229 ~~~~~~~  235 (507)
                      .+..|..
T Consensus       354 ~tg~l~~  360 (543)
T 1nir_A          354 KDRRLSA  360 (543)
T ss_dssp             TTTEEEE
T ss_pred             CCCeEEE
Confidence            8877654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=97.14  E-value=0.0076  Score=60.77  Aligned_cols=98  Identities=10%  Similarity=0.060  Sum_probs=63.2

Q ss_pred             CcEEEEEeCCCCeEEecCcceEeeCCeeeEEeecCCCCCCCeeEEEEcCCCc-EEEEeC---------CCCeEEEEeCCC
Q 010579           44 VKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDS---------ENSNIYKISTSL  113 (507)
Q Consensus        44 ~~~I~~~d~~t~~i~aG~~~~~~~~G~~~~~~~~G~~~~~~P~gIaVd~dG~-LYVaDs---------~n~rI~ki~~~g  113 (507)
                      .+.|+.+|..++++.     .....|             ..| +|++++||. |||++.         ..+.|.+|+...
T Consensus        30 d~~v~v~D~~t~~~~-----~~i~~g-------------~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t   90 (361)
T 2oiz_A           30 ESRVHVYDYTNGKFL-----GMVPTA-------------FNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK   90 (361)
T ss_dssp             GCEEEEEETTTCCEE-----EEEECC-------------EEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred             cCeEEEEECCCCeEE-----EEecCC-------------CCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence            357788887766544     111111             258 999999985 999974         235699998752


Q ss_pred             CCCCcc-EEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeCC-CCeEEEEcCCC
Q 010579          114 SPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTM-NMAIRKISDTG  173 (507)
Q Consensus       114 ~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs~-N~rIrk~d~~G  173 (507)
                         .++ ..+.... +..         ..-..|.+|++++||+ |||+... .+.|.+||...
T Consensus        91 ---~~~~~~i~~~~-~~~---------~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~  140 (361)
T 2oiz_A           91 ---LTFEKEISLPP-KRV---------QGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAK  140 (361)
T ss_dssp             ---CCEEEEEEECT-TBC---------CBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTT
T ss_pred             ---CcEEEEEEcCc-ccc---------ccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCC
Confidence               222 2221110 000         0125799999999997 9999876 68899999544

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.09  E-value=0.0094  Score=58.06  Aligned_cols=111  Identities=21%  Similarity=0.224  Sum_probs=69.2

Q ss_pred             CCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCC---ccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEE
Q 010579           83 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYS---RPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIA  159 (507)
Q Consensus        83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g---~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVA  159 (507)
                      .+-..|+++|+|.||.+  .++.++++++......   ...+.+|.. |..+          |   ..+.+|++|+||++
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~-Gw~~----------F---~a~~fD~~G~LYav  104 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNG-GWNQ----------F---QFLFFDPNGYLYAV  104 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECS-CGGG----------C---SEEEECTTSCEEEE
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccc-cccc----------c---eEEEECCCCCEEEe
Confidence            35669999999999999  5678999998532110   012333331 1111          2   37999999999999


Q ss_pred             eCCCCeEEEEcC--CCc------EEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECC
Q 010579          160 DTMNMAIRKISD--TGV------TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH  229 (507)
Q Consensus       160 Ds~N~rIrk~d~--~GV------stIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~  229 (507)
                        .+.+|+++++  ++-      .+..|..     |.       ..|   .. ++.+++|.||.++  ++++.+-.+.
T Consensus       105 --~dG~iyr~~pP~~~~~~Wl~~a~~vg~~-----gw-------~~~---~~-lff~p~G~Lyav~--dg~lyr~~~P  162 (236)
T 1tl2_A          105 --SKDKLYKASPPQSDTDNWIARATEVGSG-----GW-------SGF---KF-LFFHPNGYLYAVH--GQQFYKALPP  162 (236)
T ss_dssp             --ETTEEEEESCCCSTTCCHHHHSEEEECS-----SG-------GGE---EE-EEECTTSCEEEEE--TTEEEEECCC
T ss_pred             --CCCEEEEeCCCcCCCCceeccccEeccC-----CC-------Cce---EE-EEECCCceEEEEe--CCcEEecCCC
Confidence              3589999995  441      1222210     00       011   33 4579999999999  5567664443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=96.91  E-value=0.021  Score=62.64  Aligned_cols=185  Identities=8%  Similarity=-0.034  Sum_probs=107.2

Q ss_pred             cceEeEEEecCCcEEEEEeCCCCeEEecCcceEeeCCeeeEEeecCCCCCCCeeEEEE-c-CCC-cEEEEe---------
Q 010579           33 AGIVSNVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAV-S-PSG-ELLVLD---------  100 (507)
Q Consensus        33 sG~l~~va~ag~~~I~~~d~~t~~i~aG~~~~~~~~G~~~~~~~~G~~~~~~P~gIaV-d-~dG-~LYVaD---------  100 (507)
                      +|....+.+..+.+|.++|+.+.++..          . + ..    ..+..|+++++ . |++ .||++.         
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~----------i-i-~i----p~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~d  163 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDA----------I-L-EI----PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVND  163 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEE----------E-E-EC----SSCCSEEEEEECCSSBCSEEEEEECSCEESSCS
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEee----------E-E-eC----CCCCCCcceeeeecCCCcEEEEecccccccCCC
Confidence            455555777777888888887766541          0 0 11    11236999998 4 665 488884         


Q ss_pred             --------CCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeCCC--------
Q 010579          101 --------SENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMN--------  163 (507)
Q Consensus       101 --------s~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs~N--------  163 (507)
                              ...+.|-.|+.+.   .++.-.+-.        +        ..|.+++++++|. +|++....        
T Consensus       164 g~~l~~~~~~~~~vtvID~~t---~~v~~qI~V--------g--------g~pd~~~~spdGk~~~vt~~~se~~~~i~~  224 (595)
T 1fwx_A          164 GTNMEDVANYVNVFTAVDADK---WEVAWQVLV--------S--------GNLDNCDADYEGKWAFSTSYNSEKGMTLPE  224 (595)
T ss_dssp             SSSTTCGGGEEEEEEEEETTT---TEEEEEEEE--------S--------SCCCCEEECSSSSEEEEEESCTTCCSSHHH
T ss_pred             CcccccccccCceEEEEECCC---CeEEEEEEe--------C--------CCccceEECCCCCEEEEEecCcccCcchhh
Confidence                    3345788888762   222211111        0        1588999999988 88888765        


Q ss_pred             ------CeEEEEcC--------CC-------cEEEecCcccCCCCCCCCC-ccCc-cCCCCceEEEEcCCCeEEEEeCCC
Q 010579          164 ------MAIRKISD--------TG-------VTTIAGGKWSRGVGHVDGP-SEDA-KFSNDFDVVYVGSSCSLLVIDRGN  220 (507)
Q Consensus       164 ------~rIrk~d~--------~G-------VstIaGG~~g~~~G~~dg~-~~~a-~f~~P~gIa~vd~~G~LyVaD~gn  220 (507)
                            ..|.+++.        +|       |+.|-+.+. .     ... .... .=..|.||.+.++...+||++.+.
T Consensus       225 ~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~-~-----~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s  298 (595)
T 1fwx_A          225 MTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKE-A-----SSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLS  298 (595)
T ss_dssp             HTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG-G-----CCSSEEEEEEESSCCCEEECTTSSEEEEECTTS
T ss_pred             ccccccceEEEeeccceeEeccCCCeeEECcEEEEeCccc-C-----CceeEEEEecCCCceEEEEcCCCCEEEEeCCCC
Confidence                  33666651        12       333321110 0     000 0000 114799999765566799999999


Q ss_pred             CeEEEEECCCCc------------eeeCCCCC-ccceEEEEecceeEEehhHH
Q 010579          221 QAIREIQLHDDD------------CSDNYDDT-FHLGIFVLVAAAFFGYMLAL  260 (507)
Q Consensus       221 ~rIr~I~l~~~~------------~~~~~~~G-~p~gIa~~~~a~~~gy~~~~  260 (507)
                      +.|..|+..+..            .......| .|..+++...+  .+|....
T Consensus       299 ~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG--~aY~t~~  349 (595)
T 1fwx_A          299 PTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG--NAYTSLF  349 (595)
T ss_dssp             SBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS--EEEEEET
T ss_pred             CeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC--eEEEEEe
Confidence            999999998642            12222223 47777776643  3454443

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=96.88  E-value=0.0068  Score=65.93  Aligned_cols=106  Identities=11%  Similarity=-0.054  Sum_probs=75.4

Q ss_pred             EcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeCCCCeEEE
Q 010579           90 VSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRK  168 (507)
Q Consensus        90 Vd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs~N~rIrk  168 (507)
                      .|+.+.+||+....+.|.+|+..+   +++...+..+                ..|.++++++||+ +||++. .+.|.+
T Consensus       163 ~d~~~~~~V~~~~~~~V~viD~~t---~~v~~~i~~g----------------~~p~~v~~SpDGr~lyv~~~-dg~V~v  222 (567)
T 1qks_A          163 WDLENLFSVTLRDAGQIALIDGST---YEIKTVLDTG----------------YAVHISRLSASGRYLFVIGR-DGKVNM  222 (567)
T ss_dssp             CCGGGEEEEEETTTTEEEEEETTT---CCEEEEEECS----------------SCEEEEEECTTSCEEEEEET-TSEEEE
T ss_pred             cCCCceEEEEeCCCCeEEEEECCC---CeEEEEEeCC----------------CCccceEECCCCCEEEEEcC-CCeEEE
Confidence            445567999999999999999873   4333222211                2578999999998 899874 568999


Q ss_pred             EcCC---C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEE----cCCCeEEEEeCCCCeEEEEECCCCce
Q 010579          169 ISDT---G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYV----GSSCSLLVIDRGNQAIREIQLHDDDC  233 (507)
Q Consensus       169 ~d~~---G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~v----d~~G~LyVaD~gn~rIr~I~l~~~~~  233 (507)
                      ||..   +  +.+|..|                  ..|.+|++.    ++...|||++...+.|..|+..+...
T Consensus       223 iD~~~~t~~~v~~i~~G------------------~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~  278 (567)
T 1qks_A          223 IDLWMKEPTTVAEIKIG------------------SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP  278 (567)
T ss_dssp             EETTSSSCCEEEEEECC------------------SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE
T ss_pred             EECCCCCCcEeEEEecC------------------CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE
Confidence            9973   3  3344221                  147888864    24558999999999999999766443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=96.86  E-value=0.0057  Score=63.10  Aligned_cols=107  Identities=10%  Similarity=-0.094  Sum_probs=71.7

Q ss_pred             CcEEEEeCCCC----eEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeC-------
Q 010579           94 GELLVLDSENS----NIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT-------  161 (507)
Q Consensus        94 G~LYVaDs~n~----rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs-------  161 (507)
                      ..+||++...+    +|.+||...   +++.-.+-.     |           ..| +|++++||. +||+++       
T Consensus        32 ~~~yV~~~~~~~~~d~vsvID~~t---~~v~~~i~v-----G-----------~~P-~i~~spDg~~lyVan~~~~r~~~   91 (368)
T 1mda_H           32 RRSHITLPAYFAGTTENWVSCAGC---GVTLGHSLG-----A-----------FLS-LAVAGHSGSDFALASTSFARSAK   91 (368)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTT---TEEEEEEEE-----C-----------TTC-EEEECTTSSCEEEEEEEETTTTS
T ss_pred             CeEEEECCccCCccceEEEEECCC---CeEEEEEeC-----C-----------CCC-ceEECCCCCEEEEEccccccccc
Confidence            47999999877    888999863   332211111     1           248 999999986 999985       


Q ss_pred             --CCCeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCC-CCeEEE--EECCC
Q 010579          162 --MNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG-NQAIRE--IQLHD  230 (507)
Q Consensus       162 --~N~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~g-n~rIr~--I~l~~  230 (507)
                        ..+.|.+||...   +.+|.-+...          .......|.++++.++...|||++.. .+.|..  ||+.+
T Consensus        92 G~~~~~VsviD~~T~~vv~~I~v~~~~----------~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H           92 GKRTDYVEVFDPVTFLPIADIELPDAP----------RFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             SSEEEEEEEECTTTCCEEEEEEETTSC----------SCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCcc----------ccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence              357899999654   4555321000          00112479999976666689999976 678888  87754

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=96.86  E-value=0.023  Score=54.06  Aligned_cols=128  Identities=10%  Similarity=0.011  Sum_probs=76.3

Q ss_pred             cEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeCCCCeEEEEcCC-
Q 010579           95 ELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDT-  172 (507)
Q Consensus        95 ~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs~N~rIrk~d~~-  172 (507)
                      .++|+....+.|..++...   ++.......+        +     ....|.+++++++|+ +||++...+.|.++|.. 
T Consensus         2 ~~~v~~~~~~~v~~~d~~~---~~~~~~~~~~--------~-----~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~   65 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEK---MAVDKVITIA--------D-----AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT   65 (337)
T ss_dssp             EEEEEEETTTEEEEEETTT---TEEEEEEECT--------T-----CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             cEEEEcCCCCeEEEEECCC---CcEEEEEEcC--------C-----CCCCccceEEcCCCCEEEEEeCCCCeEEEEECCC
Confidence            3566666777788887652   3322211111        0     001488999999995 89999999999999953 


Q ss_pred             C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeC-----------CCCeEEEEECCCCceeeC-CC
Q 010579          173 G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR-----------GNQAIREIQLHDDDCSDN-YD  238 (507)
Q Consensus       173 G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~-----------gn~rIr~I~l~~~~~~~~-~~  238 (507)
                      +  +.++..+..+            ..-..|.++++.++...||+++.           .++.|+.+++.+..+... ..
T Consensus        66 ~~~~~~~~~~~~~------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~  133 (337)
T 1pby_B           66 GETLGRIDLSTPE------------ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA  133 (337)
T ss_dssp             CCEEEEEECCBTT------------EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC
T ss_pred             CCeEeeEEcCCcc------------cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC
Confidence            3  3334321100            00125778886434447899863           358999999987654432 22


Q ss_pred             CCccceEEEEec
Q 010579          239 DTFHLGIFVLVA  250 (507)
Q Consensus       239 ~G~p~gIa~~~~  250 (507)
                      ...+.++++...
T Consensus       134 ~~~~~~~~~s~d  145 (337)
T 1pby_B          134 PRQITMLAWARD  145 (337)
T ss_dssp             CSSCCCEEECTT
T ss_pred             CCCcceeEECCC
Confidence            334667776544

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=96.83  E-value=0.031  Score=59.44  Aligned_cols=140  Identities=14%  Similarity=0.199  Sum_probs=79.8

Q ss_pred             CeeeEEeecCCCCCCCeeEEEEcCCCc--EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcc
Q 010579           69 GYTVETVFEGSKFGMEPFSVAVSPSGE--LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPK  146 (507)
Q Consensus        69 G~~~~~~~~G~~~~~~P~gIaVd~dG~--LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~  146 (507)
                      |+.++.+..|   +..|++|++.|||.  |||++. .++|++++.++...  ...+++...-..   .|. .......+.
T Consensus         3 gf~v~~va~g---L~~P~~~a~~pdG~~rl~V~er-~G~i~~~~~~g~~~--~~~~~~~~~~~~---~g~-~~~~e~Gll   72 (463)
T 2wg3_C            3 CFCIQEVVSG---LRQPVGALHSGDGSQRLFILEK-EGYVKILTPEGEIF--KEPYLDIHKLVQ---SGI-KGGDERGLL   72 (463)
T ss_dssp             CEEEEEEEEE---ESSEEEEECCSSSSCCEEEEET-TTEEEEECTTSCBC--SSCSEECTTTBC---CCC-SSSCCCSEE
T ss_pred             ceEEEEeccC---CCCceEEEECCCCCeEEEEEeC-CceEEEEeCCCCee--eeeecCCcceec---cCc-cccCCCcce
Confidence            4444444442   34899999999985  999997 58999998764211  112222211000   000 001124567


Q ss_pred             eEEEcCC----CCEEEEeCCC------------CeEEEEcCC-----C-----cEEEecCcccCCCCCCCCCccCccCCC
Q 010579          147 GLAVDDR----GNIYIADTMN------------MAIRKISDT-----G-----VTTIAGGKWSRGVGHVDGPSEDAKFSN  200 (507)
Q Consensus       147 GIaVd~d----GnIYVADs~N------------~rIrk~d~~-----G-----VstIaGG~~g~~~G~~dg~~~~a~f~~  200 (507)
                      |||++++    |.|||+-+..            .+|.++...     .     ..+|......            ..--.
T Consensus        73 gia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~------------~~~H~  140 (463)
T 2wg3_C           73 SLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAEL------------HRKHL  140 (463)
T ss_dssp             EEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEES------------SSSSC
T ss_pred             eeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCC------------CCccc
Confidence            9999985    8899985421            367666521     1     2233211100            00112


Q ss_pred             CceEEEEcCCCeEEEE--eCC---------------CCeEEEEECCCC
Q 010579          201 DFDVVYVGSSCSLLVI--DRG---------------NQAIREIQLHDD  231 (507)
Q Consensus       201 P~gIa~vd~~G~LyVa--D~g---------------n~rIr~I~l~~~  231 (507)
                      ...|+ .+++|.|||+  |.+               .++|.+|++++.
T Consensus       141 g~~l~-fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~  187 (463)
T 2wg3_C          141 GGQLL-FGPDGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTD  187 (463)
T ss_dssp             EEEEE-ECTTSCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCC
T ss_pred             CCcEe-ECCCCcEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCC
Confidence            34566 4889999998  433               468999999884

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=96.82  E-value=0.05  Score=56.58  Aligned_cols=151  Identities=16%  Similarity=0.246  Sum_probs=93.9

Q ss_pred             eEeEEEecCCcEEEEEeCCCCeEEe--cCcceEeeCCeeeEEeecCCCC--CCCeeEEEEcCC----C-cEEEEeCCCCe
Q 010579           35 IVSNVVSALVKWLWSLKDSPKTAVS--SSSMIKFEGGYTVETVFEGSKF--GMEPFSVAVSPS----G-ELLVLDSENSN  105 (507)
Q Consensus        35 ~l~~va~ag~~~I~~~d~~t~~i~a--G~~~~~~~~G~~~~~~~~G~~~--~~~P~gIaVd~d----G-~LYVaDs~n~r  105 (507)
                      ....+++++...|.++|..+++...  ...+ ..+...  ....+|...  ...-.||+++++    + .||+.-..+.+
T Consensus       171 ~~aYItD~~~~gLIVydl~~~~swRv~~~~~-~pd~~~--~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~  247 (381)
T 3q6k_A          171 TFVYITNFLRGALFIYDHKKQDSWNVTHPTF-KAERPT--KFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIK  247 (381)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEECGGG-SCCSCE--EEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSE
T ss_pred             cEEEEEcCCCCcEEEEECCCCcEEEEccCCC-ccccCc--ceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCc
Confidence            3344888888899999998887441  1111 111111  111222111  124568999886    3 59999998889


Q ss_pred             EEEEeCC----CCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEc-CCCCEEEEeCCCCeEEEEcCCC-------
Q 010579          106 IYKISTS----LSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVD-DRGNIYIADTMNMAIRKISDTG-------  173 (507)
Q Consensus       106 I~ki~~~----g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd-~dGnIYVADs~N~rIrk~d~~G-------  173 (507)
                      ++++...    .+....+..+ |.    .|         ......++++| .+|+||+++..+++|.+.++++       
T Consensus       248 ly~V~T~~L~~~~~~~~v~~~-G~----kg---------~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n  313 (381)
T 3q6k_A          248 VYSVNTKELKQKGGKLNPELL-GN----RG---------KYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKN  313 (381)
T ss_dssp             EEEEEHHHHSSTTCCCCCEEE-EE----CC---------TTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGG
T ss_pred             EEEEEHHHhhCcchhhceEEe-ee----cC---------CCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCc
Confidence            9999732    1111112211 11    00         01233478897 7899999999999999999765       


Q ss_pred             cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeC
Q 010579          174 VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR  218 (507)
Q Consensus       174 VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~  218 (507)
                      +.+++-               +..|..|.++. ++.+|.|||...
T Consensus       314 ~~~l~~---------------d~~l~~pd~~~-i~~~g~Lwv~sn  342 (381)
T 3q6k_A          314 TDVVYT---------------SSRFVFGTDIS-VDSKGGLWFMSN  342 (381)
T ss_dssp             EEEEEE---------------CTTCCSEEEEE-ECTTSCEEEEEC
T ss_pred             eEEEEE---------------CCCccccCeEE-ECCCCeEEEEEC
Confidence            355542               22688999998 688999999874

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=96.81  E-value=0.013  Score=64.47  Aligned_cols=122  Identities=21%  Similarity=0.254  Sum_probs=76.0

Q ss_pred             CCCCCeeEEEEcC-CCcEEEEeCCC---------------------CeEEEEeCCCCCCC----c--cEEEecCCCCcc-
Q 010579           80 KFGMEPFSVAVSP-SGELLVLDSEN---------------------SNIYKISTSLSPYS----R--PKLVAGSPEGYY-  130 (507)
Q Consensus        80 ~~~~~P~gIaVd~-dG~LYVaDs~n---------------------~rI~ki~~~g~~~g----~--i~~vaG~~~G~~-  130 (507)
                      ..+..|.+|++++ +|.|||+-+.+                     ++|+++........    +  +.+++|.+.... 
T Consensus       381 T~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~  460 (592)
T 3zwu_A          381 TRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG  460 (592)
T ss_dssp             CCEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred             EEEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCcccccc
Confidence            3457999999998 89999997753                     57999976432111    1  223444332111 


Q ss_pred             ---ccCCCCcccccCCCcceEEEcCCCCEEEE-eC-----------CCCeEEEEcCC-C-cEEEecCcccCCCCCCCCCc
Q 010579          131 ---GHVDGRPRGARMNHPKGLAVDDRGNIYIA-DT-----------MNMAIRKISDT-G-VTTIAGGKWSRGVGHVDGPS  193 (507)
Q Consensus       131 ---G~~dG~~~~a~fn~P~GIaVd~dGnIYVA-Ds-----------~N~rIrk~d~~-G-VstIaGG~~g~~~G~~dg~~  193 (507)
                         +..........|+.|-+|+||++|+|||+ |.           +|+.+..++.. | +..++-+..+          
T Consensus       461 ~~~~~~~~~~~~~~f~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~g----------  530 (592)
T 3zwu_A          461 TPKGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIG----------  530 (592)
T ss_dssp             SGGGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTT----------
T ss_pred             cccccccccCCCCCccCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCC----------
Confidence               11111123456999999999999999997 43           35677888743 4 6766543221          


Q ss_pred             cCccCCCCceEEEEcCCCeEEEE
Q 010579          194 EDAKFSNDFDVVYVGSSCSLLVI  216 (507)
Q Consensus       194 ~~a~f~~P~gIa~vd~~G~LyVa  216 (507)
                           ....|+++.++...|||.
T Consensus       531 -----aE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          531 -----CEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             -----CEEEEEEECTTSSEEEEE
T ss_pred             -----ccCcCeeECCCCCEEEEE
Confidence                 134577876666677775

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.48  E-value=0.14  Score=52.78  Aligned_cols=140  Identities=13%  Similarity=0.130  Sum_probs=79.8

Q ss_pred             cEEEEeCC--CCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEE--cCC-CC--EEEEeCCCCeEE
Q 010579           95 ELLVLDSE--NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAV--DDR-GN--IYIADTMNMAIR  167 (507)
Q Consensus        95 ~LYVaDs~--n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaV--d~d-Gn--IYVADs~N~rIr  167 (507)
                      .+|+++..  +++|..|+.+.. .+.+..+.... -        .....+..|.|||+  +++ |.  +||.+.. .++.
T Consensus        88 la~as~R~~~~n~l~vf~iDp~-~~~l~~i~~~~-~--------pv~t~~~~pyGlcly~~~~~g~~yafV~~k~-G~~~  156 (355)
T 3amr_A           88 IAAASNRSEGKNTIEIYAIDGK-NGTLQSMTDPD-H--------PIATAINEVYGFTLYHSQKTGKYYAMVTGKE-GEFE  156 (355)
T ss_dssp             EEEEEECSTTCCEEEEEEECTT-TCCEEECSCTT-S--------CEECCCSSCCCEEEEECTTTCCEEEEEECSS-SEEE
T ss_pred             EEEEeCCCCCCCeEEEEEECCC-CCceeeccccc-c--------CcCCCCCCeeEEEEEecCCCCcEEEEEECCC-CeEE
Confidence            36899998  899988854311 13333321110 0        00123678999999  774 53  7888775 5666


Q ss_pred             EEc----CCC-c-----EEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCc-----
Q 010579          168 KIS----DTG-V-----TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD-----  232 (507)
Q Consensus       168 k~d----~~G-V-----stIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~-----  232 (507)
                      .+.    .+| +     .++.-+                  ..|-++++.+..+.|||++...+ ||+|+.+...     
T Consensus       157 q~~l~~~~~g~~~~~lVR~f~lg------------------sq~EgcvvDd~~g~Lyv~eEd~G-Iw~~da~p~~~~~~~  217 (355)
T 3amr_A          157 QYELKADKNGYISGKKVRAFKMN------------------SQTEGMAADDEYGRLYIAEEDEA-IWKFSAEPDGGSNGT  217 (355)
T ss_dssp             EEEEEECTTSCEEEEEEEEEECS------------------SCEEEEEEETTTTEEEEEETTTE-EEEEECSTTSCSCCE
T ss_pred             EEEEEeCCCCcccceEEEEecCC------------------CCcceEEEcCCCCeEEEecccce-EEEEeCCcCCCCCce
Confidence            533    233 2     222110                  15678887778899999999855 9999965322     


Q ss_pred             eee-CCCCC---ccceEEEEecceeEEehhHHHhcc
Q 010579          233 CSD-NYDDT---FHLGIFVLVAAAFFGYMLALLQRR  264 (507)
Q Consensus       233 ~~~-~~~~G---~p~gIa~~~~a~~~gy~~~~lq~~  264 (507)
                      ... ....+   -+.||++..+..--||.++.-|..
T Consensus       218 ~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~  253 (355)
T 3amr_A          218 VIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN  253 (355)
T ss_dssp             EEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred             EEEEecCCccccCcceEEEEecCCCCEEEEEEcCCC
Confidence            111 22222   357888764432234545544443

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.46  E-value=0.092  Score=52.41  Aligned_cols=105  Identities=10%  Similarity=0.117  Sum_probs=68.0

Q ss_pred             EEcCC-CcEEEEe---CCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCC-CEEEEeCCC
Q 010579           89 AVSPS-GELLVLD---SENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRG-NIYIADTMN  163 (507)
Q Consensus        89 aVd~d-G~LYVaD---s~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dG-nIYVADs~N  163 (507)
                      ++.++ +.||++|   ..+..|++++.+|+.   ...+....               .     ++++++| .||.+|.+.
T Consensus       110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~---~~~lt~~~---------------~-----~~~~~~g~~iy~t~~g~  166 (302)
T 3s25_A          110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEE---KKKIKNHY---------------L-----FTCNTSDRYFYYNNPKN  166 (302)
T ss_dssp             EEEEETTEEEEEEESSSSCEEEEEEETTSCC---CEEEESSC---------------C-----CCSEEETTEEEEECTTT
T ss_pred             EEEEeCCEEEEEeecCCCCceEEEEECCCCC---eEEEeCCC---------------c-----eEeeEECCEEEEEeCCC
Confidence            34443 4699999   678899999998532   23333211               0     2234444 599999988


Q ss_pred             CeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCC-CeEEEEECCCCceeeC
Q 010579          164 MAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN-QAIREIQLHDDDCSDN  236 (507)
Q Consensus       164 ~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn-~rIr~I~l~~~~~~~~  236 (507)
                      .+|.+++.+|  ..++..+                    +..+++.+..+.||.+|..+ .+|.++++++......
T Consensus       167 ~~Iy~~~l~g~~~~~l~~~--------------------~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~L  222 (302)
T 3s25_A          167 GQLYRYDTASQSEALFYDC--------------------NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVL  222 (302)
T ss_dssp             CCEEEEETTTTEEEEEECS--------------------CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEEC
T ss_pred             ceEEEEECCCCCEEEEeCC--------------------CccceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEE
Confidence            8999999776  4444211                    11122345788999998754 6999999998765543

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=96.39  E-value=0.0072  Score=66.11  Aligned_cols=62  Identities=11%  Similarity=0.220  Sum_probs=49.8

Q ss_pred             CCCCeeEEEEcCCCcEEE-EeCC-----------CCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceE
Q 010579           81 FGMEPFSVAVSPSGELLV-LDSE-----------NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGL  148 (507)
Q Consensus        81 ~~~~P~gIaVd~dG~LYV-aDs~-----------n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GI  148 (507)
                      .+++|.+|+||++|+||| +|..           ++.|+++++.   .|++..++..+              .+..|+||
T Consensus       474 ~fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~---tGel~~fl~~P--------------~~aEpnGi  536 (592)
T 4a9v_A          474 MFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPA---TGEIRRFMVGP--------------IGCEVTGI  536 (592)
T ss_dssp             CCCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTT---TCCEEEEEECC--------------TTCEEEEE
T ss_pred             ccCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCC---CCeEEEEEeCC--------------CCccccCC
Confidence            468999999999999999 8863           5689999886   46777776432              13578999


Q ss_pred             EEcCCCC-EEEE
Q 010579          149 AVDDRGN-IYIA  159 (507)
Q Consensus       149 aVd~dGn-IYVA  159 (507)
                      ++++|+. |||+
T Consensus       537 afSPD~ktLfV~  548 (592)
T 4a9v_A          537 SFSPDQKTLFVG  548 (592)
T ss_dssp             EECTTSSEEEEE
T ss_pred             EECCCCCEEEEE
Confidence            9999987 8887

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=96.35  E-value=0.074  Score=56.66  Aligned_cols=136  Identities=10%  Similarity=0.027  Sum_probs=77.2

Q ss_pred             CeeEEEE--cCCCc-EEEEeC-----CCCeEEEEeCCCCCCCccEEE--ecCCCCccccCCCCcc------cccCCCcce
Q 010579           84 EPFSVAV--SPSGE-LLVLDS-----ENSNIYKISTSLSPYSRPKLV--AGSPEGYYGHVDGRPR------GARMNHPKG  147 (507)
Q Consensus        84 ~P~gIaV--d~dG~-LYVaDs-----~n~rI~ki~~~g~~~g~i~~v--aG~~~G~~G~~dG~~~------~a~fn~P~G  147 (507)
                      .|..|.+  +|+|. +||+..     .++.|.++..+.   |.....  +......   ..+...      .+.-+.|.+
T Consensus       252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~---g~~~~~~vIdi~~~~---v~~~lp~~~~~f~~~~~~pa~  325 (462)
T 2ece_A          252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED---GKWNAEKVIEIPAEP---LEGNLPEILKPFKAVPPLVTD  325 (462)
T ss_dssp             EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET---TEEEEEEEEEECCEE---CCSSCCGGGGGGTEECCCCCC
T ss_pred             ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC---CceeEEEEEeCCCcc---ccccccccccccccCCCceeE
Confidence            5888877  88885 888887     778887766542   222111  1011000   000000      000257999


Q ss_pred             EEEcCCCC-EEEEeCCCCeEEEEcC--CC-c---EEEe-cCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEe--
Q 010579          148 LAVDDRGN-IYIADTMNMAIRKISD--TG-V---TTIA-GGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVID--  217 (507)
Q Consensus       148 IaVd~dGn-IYVADs~N~rIrk~d~--~G-V---stIa-GG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD--  217 (507)
                      |.+++||+ |||++.+.+.|.+|+-  .+ .   ..+. ||...    ..+-+.....-..|.++++..+...|||++  
T Consensus       326 I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~----~~~~~~G~~~~ggPr~~~lSpDGk~LyVaNsl  401 (462)
T 2ece_A          326 IDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFH----RADHPAGHKLTGAPQMLEISRDGRRVYVTNSL  401 (462)
T ss_dssp             EEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTT----CBCCTTSCCCCSCCCCEEECTTSSEEEEECCC
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeec----cccccccccCCCCCCEEEEcCCCCEEEEEcCC
Confidence            99999998 9999999999999983  22 2   2222 22110    001110111123699999765666899999  


Q ss_pred             ------C-----CCCeEEEEECC
Q 010579          218 ------R-----GNQAIREIQLH  229 (507)
Q Consensus       218 ------~-----gn~rIr~I~l~  229 (507)
                            .     .+..+.+++.+
T Consensus       402 ~~~wd~Qfyp~~~~~~~~~~~vd  424 (462)
T 2ece_A          402 YSTWDNQFYPEGLKGWMVKLNAN  424 (462)
T ss_dssp             CHHHHHHHSTTCCCCEEEEEEEC
T ss_pred             cccccccccCCCCceEEEEEEec
Confidence                  2     45666666543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=96.31  E-value=0.026  Score=60.05  Aligned_cols=119  Identities=17%  Similarity=0.174  Sum_probs=68.1

Q ss_pred             CeeEEEEcCC----CcEEEEeCCC------------CeEEEEeCCCCC-----CCccEEEecCCCCccccCCCCcccccC
Q 010579           84 EPFSVAVSPS----GELLVLDSEN------------SNIYKISTSLSP-----YSRPKLVAGSPEGYYGHVDGRPRGARM  142 (507)
Q Consensus        84 ~P~gIaVd~d----G~LYVaDs~n------------~rI~ki~~~g~~-----~g~i~~vaG~~~G~~G~~dG~~~~a~f  142 (507)
                      .+.+|+++|+    |.|||+-+..            .+|.++......     .....++.......           .-
T Consensus        70 Gllgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~-----------~~  138 (463)
T 2wg3_C           70 GLLSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELH-----------RK  138 (463)
T ss_dssp             SEEEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESS-----------SS
T ss_pred             cceeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCC-----------Cc
Confidence            4679999995    8899986521            488888765211     01223333211000           11


Q ss_pred             CCcceEEEcCCCCEEEE--eCC---------------CCeEEEEcCCCcE-----EEecCcccCCCCCCCC-----CccC
Q 010579          143 NHPKGLAVDDRGNIYIA--DTM---------------NMAIRKISDTGVT-----TIAGGKWSRGVGHVDG-----PSED  195 (507)
Q Consensus       143 n~P~GIaVd~dGnIYVA--Ds~---------------N~rIrk~d~~GVs-----tIaGG~~g~~~G~~dg-----~~~~  195 (507)
                      ..-..|++++||.|||+  |..               ...|.+|+.+|-.     .|.-+.     .+.+.     ..-.
T Consensus       139 H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dN-----Pf~~~~~~~~eI~a  213 (463)
T 2wg3_C          139 HLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSN-----PHFNSTNQPPEVFA  213 (463)
T ss_dssp             SCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTS-----TTTTCSSSCTTEEE
T ss_pred             ccCCcEeECCCCcEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCC-----CCcCCCCCcccEEE
Confidence            23458999999999998  433               2468888877621     121110     01111     0112


Q ss_pred             ccCCCCceEEEEcCC----C--eEEEEeC
Q 010579          196 AKFSNDFDVVYVGSS----C--SLLVIDR  218 (507)
Q Consensus       196 a~f~~P~gIa~vd~~----G--~LyVaD~  218 (507)
                      ..+.+|+++++.+.+    |  .||++|.
T Consensus       214 ~G~RNp~gla~dp~tg~~~G~l~~~~~D~  242 (463)
T 2wg3_C          214 HGLHDPGRCAVDRHPTDININLTILCSDS  242 (463)
T ss_dssp             ECCSSCCBEEEESSCSSTTCSEEEEEECC
T ss_pred             ECCCCcceEEECCCCCCcccceEEEeccc
Confidence            247899999976554    4  5778886

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.18  E-value=0.13  Score=53.10  Aligned_cols=75  Identities=15%  Similarity=0.186  Sum_probs=52.8

Q ss_pred             CCeeEEEEcC-CCcEEEEeCCCCeEEEEeCCCC--CCCccEEEecCCCCccccCCCCcccccCC-CcceEEEc--CC--C
Q 010579           83 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLS--PYSRPKLVAGSPEGYYGHVDGRPRGARMN-HPKGLAVD--DR--G  154 (507)
Q Consensus        83 ~~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~--~~g~i~~vaG~~~G~~G~~dG~~~~a~fn-~P~GIaVd--~d--G  154 (507)
                      ..|.++++|+ .|.|||++-.. .|++|+....  ..+++...++.+              .|. .+.||++.  ++  |
T Consensus       180 sq~EgcvvDd~~g~Lyv~eEd~-GIw~~da~p~~~~~~~~v~~~~~g--------------~l~aDvEGLai~~~~~g~g  244 (355)
T 3amr_A          180 SQTEGMAADDEYGRLYIAEEDE-AIWKFSAEPDGGSNGTVIDRADGR--------------HLTRDIEGLTIYYAADGKG  244 (355)
T ss_dssp             SCEEEEEEETTTTEEEEEETTT-EEEEEECSTTSCSCCEEEEEBSSS--------------SBCSCEEEEEEEECGGGCE
T ss_pred             CCcceEEEcCCCCeEEEecccc-eEEEEeCCcCCCCCceEEEEecCC--------------ccccCcceEEEEecCCCCE
Confidence            4799999997 68999999874 5999995421  112222222211              133 79999995  33  4


Q ss_pred             CEEEEeCCCCeEEEEcCC
Q 010579          155 NIYIADTMNMAIRKISDT  172 (507)
Q Consensus       155 nIYVADs~N~rIrk~d~~  172 (507)
                      .|+|++-+++...+|+..
T Consensus       245 yLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          245 YLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEEEEGGGTEEEEEESS
T ss_pred             EEEEEcCCCCEEEEEECC
Confidence            599999999999999975

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=96.12  E-value=0.22  Score=53.01  Aligned_cols=129  Identities=12%  Similarity=-0.057  Sum_probs=76.0

Q ss_pred             CeeEEEEcCCCcE-EEEeC------------------CCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCC
Q 010579           84 EPFSVAVSPSGEL-LVLDS------------------ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNH  144 (507)
Q Consensus        84 ~P~gIaVd~dG~L-YVaDs------------------~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~  144 (507)
                      .++++.+.|++++ |+++.                  ..++|..++...   +++.-.+-.  +..|           ..
T Consensus       189 ~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~---~k~~~tI~v--g~~g-----------~~  252 (462)
T 2ece_A          189 LAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK---RKRIHSLTL--GEEN-----------RM  252 (462)
T ss_dssp             CCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT---TEEEEEEES--CTTE-----------EE
T ss_pred             ccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC---CcEeeEEec--CCCC-----------Cc
Confidence            5778999998874 55542                  379999999873   322211111  1111           25


Q ss_pred             cceEEE--cCCCC-EEEEeC-----CCCeEEEEc-CCC----cEEEecCcccCCCCCCC-CCc-cCccCCCCceEEEEcC
Q 010579          145 PKGLAV--DDRGN-IYIADT-----MNMAIRKIS-DTG----VTTIAGGKWSRGVGHVD-GPS-EDAKFSNDFDVVYVGS  209 (507)
Q Consensus       145 P~GIaV--d~dGn-IYVADs-----~N~rIrk~d-~~G----VstIaGG~~g~~~G~~d-g~~-~~a~f~~P~gIa~vd~  209 (507)
                      |.+|.+  +++|. +||+..     .++.|.++. ++|    +.+|--..... .+... -+. ..+.-..|.+|.+..+
T Consensus       253 P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v-~~~lp~~~~~f~~~~~~pa~I~lS~D  331 (462)
T 2ece_A          253 ALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPL-EGNLPEILKPFKAVPPLVTDIDISLD  331 (462)
T ss_dssp             EEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEEC-CSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred             cceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccc-cccccccccccccCCCceeEEEECCC
Confidence            788877  89987 999887     777777655 224    12221000000 00000 000 0001246899997666


Q ss_pred             CCeEEEEeCCCCeEEEEECC
Q 010579          210 SCSLLVIDRGNQAIREIQLH  229 (507)
Q Consensus       210 ~G~LyVaD~gn~rIr~I~l~  229 (507)
                      +..|||++++.+.|+.++..
T Consensus       332 GrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          332 DKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             SCEEEEEETTTTEEEEEECS
T ss_pred             CCEEEEEeCCCCEEEEEEec
Confidence            67899999999999999975

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=96.00  E-value=0.11  Score=49.65  Aligned_cols=67  Identities=16%  Similarity=0.245  Sum_probs=43.1

Q ss_pred             CcceEEEcCCCCEEEEeCCCCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCC
Q 010579          144 HPKGLAVDDRGNIYIADTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQ  221 (507)
Q Consensus       144 ~P~GIaVd~dGnIYVADs~N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~  221 (507)
                      ....+++|++|+|||+.. ++.|.+++.+|  +..+....                 ..+..++ ++.++.|||+.. ++
T Consensus       216 ~~~~~~~~~~g~l~v~t~-~~gl~~~~~~g~~~~~~~~~~-----------------~~~~~~~-~~~~g~l~v~t~-~g  275 (330)
T 3hxj_A          216 TVTRPAISEDGTIYVTSL-DGHLYAINPDGTEKWRFKTGK-----------------RIESSPV-IGNTDTIYFGSY-DG  275 (330)
T ss_dssp             CCSCCEECTTSCEEEEET-TTEEEEECTTSCEEEEEECSS-----------------CCCSCCE-ECTTSCEEEECT-TC
T ss_pred             ceeceEECCCCeEEEEcC-CCeEEEECCCCCEeEEeeCCC-----------------Cccccce-EcCCCeEEEecC-CC
Confidence            456889999999999975 56788888777  22221110                 0112334 467788888765 35


Q ss_pred             eEEEEECCC
Q 010579          222 AIREIQLHD  230 (507)
Q Consensus       222 rIr~I~l~~  230 (507)
                      .|.+++.++
T Consensus       276 gl~~~d~~g  284 (330)
T 3hxj_A          276 HLYAINPDG  284 (330)
T ss_dssp             EEEEECTTS
T ss_pred             CEEEECCCC
Confidence            788887643

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=95.93  E-value=0.0089  Score=65.63  Aligned_cols=74  Identities=23%  Similarity=0.345  Sum_probs=55.7

Q ss_pred             CCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCC---CCc----cEEEecCCCCccccCCCCcccccCCCcceEEEcCCC
Q 010579           83 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSP---YSR----PKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRG  154 (507)
Q Consensus        83 ~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~---~g~----i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dG  154 (507)
                      .+|+++.++|||. +||++...++|.+|+.....   .+.    -.+++ ..  ..|           ..|.++++|++|
T Consensus       277 ~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~-~v--~vG-----------~gP~h~aF~~dG  342 (595)
T 1fwx_A          277 NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA-EP--ELG-----------LGPLHTAFDGRG  342 (595)
T ss_dssp             SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE-CC--BCC-----------SCEEEEEECTTS
T ss_pred             CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEE-Ec--CCC-----------CCcceEEECCCC
Confidence            5899999999997 99999999999999975110   000    00111 10  011           369999999999


Q ss_pred             CEEEEeCCCCeEEEEc
Q 010579          155 NIYIADTMNMAIRKIS  170 (507)
Q Consensus       155 nIYVADs~N~rIrk~d  170 (507)
                      ++|++-...+.|.+++
T Consensus       343 ~aY~t~~ldsqV~kwd  358 (595)
T 1fwx_A          343 NAYTSLFLDSQVVKWN  358 (595)
T ss_dssp             EEEEEETTTTEEEEEE
T ss_pred             eEEEEEecCCcEEEEE
Confidence            9999999999999999

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.84  E-value=0.17  Score=50.46  Aligned_cols=105  Identities=9%  Similarity=0.066  Sum_probs=66.6

Q ss_pred             eeEEEEcCCCcEEEEeCC-------------CCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEc
Q 010579           85 PFSVAVSPSGELLVLDSE-------------NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVD  151 (507)
Q Consensus        85 P~gIaVd~dG~LYVaDs~-------------n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd  151 (507)
                      +..|.++. +.||.++..             .+.|++++.+++.   ...+...                    .+.++.
T Consensus        57 ~~~i~~~g-~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~---~~~l~~~--------------------~~~~~s  112 (302)
T 3s25_A           57 AMYINADK-NYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHG---STVLDPD--------------------PCIYAS  112 (302)
T ss_dssp             EEEEEECS-SEEEEEEECC------CCSSCCSEEEEEEETTSCC---CEEEECS--------------------CEEEEE
T ss_pred             eeeEEEcC-CEEEEEECCCCcccccceeccCCCeEEEEeCCCCc---ceEeecC--------------------CccEEE
Confidence            45666553 468877654             3689999998532   2222211                    122344


Q ss_pred             CCC-CEEEEe---CCCCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEE
Q 010579          152 DRG-NIYIAD---TMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIRE  225 (507)
Q Consensus       152 ~dG-nIYVAD---s~N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~  225 (507)
                      ++| .||++|   .++..|.+++.+|  ...|....              +   .|.    ....+.||.+|.+...|.+
T Consensus       113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~--------------~---~~~----~~~g~~iy~t~~g~~~Iy~  171 (302)
T 3s25_A          113 LIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHY--------------L---FTC----NTSDRYFYYNNPKNGQLYR  171 (302)
T ss_dssp             EETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSC--------------C---CCS----EEETTEEEEECTTTCCEEE
T ss_pred             EeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCC--------------c---eEe----eEECCEEEEEeCCCceEEE
Confidence            444 599999   6788999999877  55553210              0   122    2345689999988899999


Q ss_pred             EECCCCcee
Q 010579          226 IQLHDDDCS  234 (507)
Q Consensus       226 I~l~~~~~~  234 (507)
                      +++++....
T Consensus       172 ~~l~g~~~~  180 (302)
T 3s25_A          172 YDTASQSEA  180 (302)
T ss_dssp             EETTTTEEE
T ss_pred             EECCCCCEE
Confidence            998876543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=95.80  E-value=0.17  Score=48.39  Aligned_cols=106  Identities=13%  Similarity=0.168  Sum_probs=59.5

Q ss_pred             EEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCCeE
Q 010579           87 SVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAI  166 (507)
Q Consensus        87 gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~rI  166 (507)
                      .++++++|.|||+. .++.|+.++..    +........               .-.....+++|.+|+|||+.   +.|
T Consensus       141 ~~~~~~~g~l~vgt-~~~~l~~~d~~----g~~~~~~~~---------------~~~~~~~~~~d~~g~l~v~t---~~l  197 (330)
T 3hxj_A          141 TPIVSEDGTIYVGS-NDNYLYAINPD----GTEKWRFKT---------------NDAITSAASIGKDGTIYFGS---DKV  197 (330)
T ss_dssp             CCEECTTSCEEEEC-TTSEEEEECTT----SCEEEEEEC---------------SSCCCSCCEECTTCCEEEES---SSE
T ss_pred             eeEEcCCCEEEEEc-CCCEEEEECCC----CCEeEEEec---------------CCCceeeeEEcCCCEEEEEe---CEE
Confidence            44566666676654 23566666654    221111100               01234467889999999998   679


Q ss_pred             EEEcCCCcEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCc
Q 010579          167 RKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD  232 (507)
Q Consensus       167 rk~d~~GVstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~  232 (507)
                      .+++.+|.....-..    .           -.....++ .+.+|.|||+.. ++.|.+++..+..
T Consensus       198 ~~~d~~g~~~~~~~~----~-----------~~~~~~~~-~~~~g~l~v~t~-~~gl~~~~~~g~~  246 (330)
T 3hxj_A          198 YAINPDGTEKWNFYA----G-----------YWTVTRPA-ISEDGTIYVTSL-DGHLYAINPDGTE  246 (330)
T ss_dssp             EEECTTSCEEEEECC----S-----------SCCCSCCE-ECTTSCEEEEET-TTEEEEECTTSCE
T ss_pred             EEECCCCcEEEEEcc----C-----------CcceeceE-ECCCCeEEEEcC-CCeEEEECCCCCE
Confidence            999977622211000    0           01234455 477788888875 4567777655443

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=95.62  E-value=0.64  Score=48.27  Aligned_cols=147  Identities=9%  Similarity=0.056  Sum_probs=89.4

Q ss_pred             CCeeEEEEc-C-------CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcc---c--cCCCCcccccCCCcceEE
Q 010579           83 MEPFSVAVS-P-------SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYY---G--HVDGRPRGARMNHPKGLA  149 (507)
Q Consensus        83 ~~P~gIaVd-~-------dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~---G--~~dG~~~~a~fn~P~GIa  149 (507)
                      ..-.+|+|| -       ++.+||+|.....|.+++...   ++...+.... -.+   +  ..+|..- .....-.|||
T Consensus       152 S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~---~~swRv~~~~-~~pd~~~~~~i~G~~~-~~~~Gi~gIa  226 (381)
T 3q6k_A          152 TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKK---QDSWNVTHPT-FKAERPTKFDYGGKEY-EFKAGIFGIT  226 (381)
T ss_dssp             GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTT---TEEEEEECGG-GSCCSCEEEEETTEEE-EECCCEEEEE
T ss_pred             CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCC---CcEEEEccCC-CccccCcceEECCEEe-EeccCceEEE
Confidence            356789999 2       457999999999999999873   4443333210 000   0  0112100 0124667999


Q ss_pred             EcCC----C-CEEEEeCCCCeEEEEcC----CC-----cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEE
Q 010579          150 VDDR----G-NIYIADTMNMAIRKISD----TG-----VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLV  215 (507)
Q Consensus       150 Vd~d----G-nIYVADs~N~rIrk~d~----~G-----VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyV  215 (507)
                      ++++    + .||+.--...++..+.+    +.     |..+ |.+ |        +     .....++++++.+|.||+
T Consensus       227 Lsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~-G~k-g--------~-----~s~~~~~~~D~~~G~ly~  291 (381)
T 3q6k_A          227 LGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELL-GNR-G--------K-----YNDAIALAYDPKTKVIFF  291 (381)
T ss_dssp             ECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEE-EEC-C--------T-----TCCEEEEEECTTTCEEEE
T ss_pred             ecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEe-eec-C--------C-----CCCcceEEEeCCCCeEEE
Confidence            9986    4 49999988888998872    11     2222 111 0        0     011123443248999999


Q ss_pred             EeCCCCeEEEEECCC-Cc-------eeeCCCCCccceEEEEe
Q 010579          216 IDRGNQAIREIQLHD-DD-------CSDNYDDTFHLGIFVLV  249 (507)
Q Consensus       216 aD~gn~rIr~I~l~~-~~-------~~~~~~~G~p~gIa~~~  249 (507)
                      ++...+.|.+++.++ ..       .......-+|.++++..
T Consensus       292 ~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~  333 (381)
T 3q6k_A          292 AEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDS  333 (381)
T ss_dssp             EESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECT
T ss_pred             EeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECC
Confidence            999999999999987 21       12223344788888753

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=95.50  E-value=0.58  Score=45.63  Aligned_cols=115  Identities=14%  Similarity=0.198  Sum_probs=76.7

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccE-EEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPK-LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~-~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      ....++++|+|.++++-...+.|+.++...   ++.. .+-+.                -.....|+++++|.++++=+.
T Consensus       166 ~v~~~~~spdg~~lasg~~dg~i~iwd~~~---~~~~~~~~~h----------------~~~v~~l~~spd~~~l~s~s~  226 (321)
T 3ow8_A          166 FILSIAYSPDGKYLASGAIDGIINIFDIAT---GKLLHTLEGH----------------AMPIRSLTFSPDSQLLVTASD  226 (321)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTT---TEEEEEECCC----------------SSCCCEEEECTTSCEEEEECT
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCC---CcEEEEEccc----------------CCceeEEEEcCCCCEEEEEcC
Confidence            456889999999888878888999998762   3322 22111                113468999999998888777


Q ss_pred             CCeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee
Q 010579          163 NMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD  235 (507)
Q Consensus       163 N~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~  235 (507)
                      .+.|+.+|...   +.++.+-.                 .....+++ .+++.++++-...+.|+..++....|..
T Consensus       227 dg~i~iwd~~~~~~~~~~~~h~-----------------~~v~~~~~-sp~~~~l~s~s~D~~v~iwd~~~~~~~~  284 (321)
T 3ow8_A          227 DGYIKIYDVQHANLAGTLSGHA-----------------SWVLNVAF-CPDDTHFVSSSSDKSVKVWDVGTRTCVH  284 (321)
T ss_dssp             TSCEEEEETTTCCEEEEECCCS-----------------SCEEEEEE-CTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             CCeEEEEECCCcceeEEEcCCC-----------------CceEEEEE-CCCCCEEEEEeCCCcEEEEeCCCCEEEE
Confidence            88899998443   33442210                 12345664 5566666666677888888887776654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.30  E-value=0.32  Score=47.32  Aligned_cols=111  Identities=20%  Similarity=0.195  Sum_probs=68.3

Q ss_pred             EEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc---EEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579           87 SVAVSPSGELLVLDSENSNIYKISTSLSPYSRP---KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  163 (507)
Q Consensus        87 gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i---~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N  163 (507)
                      .|.+|++|.||++  .+++|+|+++..+.....   .+.+|.. +             ...=.-|+++++|+||.++  +
T Consensus        92 a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~-g-------------w~~~~~lff~p~G~Lyav~--d  153 (236)
T 1tl2_A           92 FLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSG-G-------------WSGFKFLFFHPNGYLYAVH--G  153 (236)
T ss_dssp             EEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECS-S-------------GGGEEEEEECTTSCEEEEE--T
T ss_pred             EEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccC-C-------------CCceEEEEECCCceEEEEe--C
Confidence            7899999999999  348999999853221111   1222221 1             1222689999999999999  5


Q ss_pred             CeEEEEc-CCC-------cEEEec-CcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCcee
Q 010579          164 MAIRKIS-DTG-------VTTIAG-GKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS  234 (507)
Q Consensus       164 ~rIrk~d-~~G-------VstIaG-G~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~  234 (507)
                      .++.+-. +.+       -.++.| +.+.             .  .+ -++ .+.++.||.++  +++|.+...+...|.
T Consensus       154 g~lyr~~~P~~~~~~wl~~~~~~g~~g~~-------------~--yr-~l~-f~~~G~l~~v~--~g~~Y~~~~p~~~~~  214 (236)
T 1tl2_A          154 QQFYKALPPVSNQDNWLARATKIGQGGWD-------------T--FK-FLF-FSSVGTLFGVQ--GGKFYEDYPPSYAYD  214 (236)
T ss_dssp             TEEEEECCCSSTTCCHHHHCEEEESSSGG-------------G--EE-EEE-ECTTSCEEEEE--TTEEEEESCCCSTTC
T ss_pred             CcEEecCCCCCCCcccccccceeccCCcc-------------e--EE-EEE-ECCCCcEEEEe--CCeEEecCCccccCc
Confidence            5565533 321       122222 1110             0  11 133 68999999999  789999977655443

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=95.24  E-value=0.43  Score=49.41  Aligned_cols=110  Identities=13%  Similarity=0.230  Sum_probs=69.2

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  163 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N  163 (507)
                      .-.+|+++||+.++++-..++.|+.++.++   ..+..+.+.                -.....++++++|.++++=..+
T Consensus       428 ~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~---~~~~~~~~~----------------~~~v~~~~~spd~~~las~~~d  488 (577)
T 2ymu_A          428 SVWGVAFSPDDQTIASASDDKTVKLWNRNG---QLLQTLTGH----------------SSSVRGVAFSPDGQTIASASDD  488 (577)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTS---CEEEEEECC----------------SSCEEEEEECTTSCEEEEEETT
T ss_pred             CeEEEEECCCCCEEEEEcCCCEEEEEECCC---CEEEEEcCC----------------CCCEEEEEEcCCCCEEEEEeCC
Confidence            456788999888888777788898888752   223333322                1235689999999988877778


Q ss_pred             CeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCC
Q 010579          164 MAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  230 (507)
Q Consensus       164 ~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~  230 (507)
                      ..|+.++.+|  +.++.+-.                 .....|++ .+++.++++-...+.|+.++..+
T Consensus       489 ~~i~iw~~~~~~~~~~~~h~-----------------~~v~~l~~-s~dg~~l~s~~~dg~v~lwd~~~  539 (577)
T 2ymu_A          489 KTVKLWNRNGQLLQTLTGHS-----------------SSVRGVAF-SPDGQTIASASDDKTVKLWNRNG  539 (577)
T ss_dssp             SEEEEEETTSCEEEEEECCS-----------------SCEEEEEE-CTTSSCEEEEETTSEEEEECTTS
T ss_pred             CEEEEEcCCCCEEEEEeCCC-----------------CCEEEEEE-cCCCCEEEEEECcCEEEEEeCCC
Confidence            8899999777  44443211                 12234553 44455444444455666666543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=95.19  E-value=1.7  Score=44.07  Aligned_cols=116  Identities=15%  Similarity=0.125  Sum_probs=65.9

Q ss_pred             CeeEEEEcCCCc-EEEEeCC--CCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEE
Q 010579           84 EPFSVAVSPSGE-LLVLDSE--NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIA  159 (507)
Q Consensus        84 ~P~gIaVd~dG~-LYVaDs~--n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVA  159 (507)
                      ....++++|||. |+++...  +.+|+.++..+   +....+.+..                .....+++++||+ |+++
T Consensus       224 ~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~---~~~~~l~~~~----------------~~~~~~~~spdg~~l~~~  284 (415)
T 2hqs_A          224 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS---GQIRQVTDGR----------------SNNTEPTWFPDSQNLAFT  284 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTT---CCEEECCCCS----------------SCEEEEEECTTSSEEEEE
T ss_pred             cccCEEEcCCCCEEEEEEecCCCceEEEEECCC---CCEEeCcCCC----------------CcccceEECCCCCEEEEE
Confidence            467899999998 5545433  45799999863   3443332211                1345789999998 5554


Q ss_pred             eC--CCCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCC--CCeEEEEECCCCce
Q 010579          160 DT--MNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG--NQAIREIQLHDDDC  233 (507)
Q Consensus       160 Ds--~N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~g--n~rIr~I~l~~~~~  233 (507)
                      ..  +..+|+.++.++  +..+....                 .....+++.++...|+++...  ...|+.+++.+..+
T Consensus       285 s~~~g~~~i~~~d~~~~~~~~l~~~~-----------------~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~  347 (415)
T 2hqs_A          285 SDQAGRPQVYKVNINGGAPQRITWEG-----------------SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV  347 (415)
T ss_dssp             ECTTSSCEEEEEETTSSCCEECCCSS-----------------SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE
T ss_pred             ECCCCCcEEEEEECCCCCEEEEecCC-----------------CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE
Confidence            42  334788888544  33332110                 012344543333345554433  35788888777665


Q ss_pred             ee
Q 010579          234 SD  235 (507)
Q Consensus       234 ~~  235 (507)
                      ..
T Consensus       348 ~~  349 (415)
T 2hqs_A          348 QV  349 (415)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=95.03  E-value=2  Score=39.09  Aligned_cols=73  Identities=25%  Similarity=0.322  Sum_probs=44.9

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEE-EEeC-
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIY-IADT-  161 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIY-VADs-  161 (507)
                      ....++++|+|..+++.. .+.|++++..+.  +....+....              .-..+..++++++|..+ ++.. 
T Consensus        43 ~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~--~~~~~~~~~~--------------~~~~~~~~~~spdg~~l~~~~~~  105 (297)
T 2ojh_A           43 LFEAPNWSPDGKYLLLNS-EGLLYRLSLAGD--PSPEKVDTGF--------------ATICNNDHGISPDGALYAISDKV  105 (297)
T ss_dssp             CCEEEEECTTSSEEEEEE-TTEEEEEESSSC--CSCEECCCTT--------------CCCBCSCCEECTTSSEEEEEECT
T ss_pred             ceEeeEECCCCCEEEEEc-CCeEEEEeCCCC--CCceEecccc--------------ccccccceEECCCCCEEEEEEeC
Confidence            466899999998666654 679999998630  2232222110              01235678999999844 4432 


Q ss_pred             --CCCeEEEEcCCC
Q 010579          162 --MNMAIRKISDTG  173 (507)
Q Consensus       162 --~N~rIrk~d~~G  173 (507)
                        ...+|..++..+
T Consensus       106 ~~~~~~l~~~~~~~  119 (297)
T 2ojh_A          106 EFGKSAIYLLPSTG  119 (297)
T ss_dssp             TTSSCEEEEEETTC
T ss_pred             CCCcceEEEEECCC
Confidence              356788887543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=94.98  E-value=2.4  Score=39.71  Aligned_cols=115  Identities=7%  Similarity=-0.038  Sum_probs=74.9

Q ss_pred             CCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           83 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      .....++++++|.++++-...+.|+.++...   ++.......                -.....++++++|+++++-..
T Consensus       184 ~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~---~~~~~~~~~----------------~~~v~~~~~s~~~~~l~~~~~  244 (337)
T 1gxr_A          184 DGASCIDISNDGTKLWTGGLDNTVRSWDLRE---GRQLQQHDF----------------TSQIFSLGYCPTGEWLAVGME  244 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTT---TEEEEEEEC----------------SSCEEEEEECTTSSEEEEEET
T ss_pred             CceEEEEECCCCCEEEEEecCCcEEEEECCC---CceEeeecC----------------CCceEEEEECCCCCEEEEEcC
Confidence            3577889999988777777788999998762   322222111                124568999999997777777


Q ss_pred             CCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCcee
Q 010579          163 NMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS  234 (507)
Q Consensus       163 N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~  234 (507)
                      ++.|+.++...  ...+.+.                 -.....+++ .+++.++++-..++.|+.+++....+.
T Consensus       245 ~~~i~~~~~~~~~~~~~~~~-----------------~~~v~~~~~-~~~~~~l~~~~~dg~i~~~~~~~~~~~  300 (337)
T 1gxr_A          245 SSNVEVLHVNKPDKYQLHLH-----------------ESCVLSLKF-AYCGKWFVSTGKDNLLNAWRTPYGASI  300 (337)
T ss_dssp             TSCEEEEETTSSCEEEECCC-----------------SSCEEEEEE-CTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             CCcEEEEECCCCCeEEEcCC-----------------ccceeEEEE-CCCCCEEEEecCCCcEEEEECCCCeEE
Confidence            88899999544  3333110                 113445664 556666666666788888887765544

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=94.94  E-value=2.9  Score=40.54  Aligned_cols=115  Identities=12%  Similarity=0.119  Sum_probs=76.7

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      .-..+++.++|.++++-...+.|+.++...   +.. .++.+.                -.....|+++++|+++++=+.
T Consensus       186 ~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~---~~~~~~~~~h----------------~~~v~~v~~~p~~~~l~s~s~  246 (340)
T 1got_B          186 DVMSLSLAPDTRLFVSGACDASAKLWDVRE---GMCRQTFTGH----------------ESDINAICFFPNGNAFATGSD  246 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTT---CSEEEEECCC----------------SSCEEEEEECTTSSEEEEEET
T ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEECCC---CeeEEEEcCC----------------cCCEEEEEEcCCCCEEEEEcC
Confidence            467899999999999988889999999762   322 222221                124568999999998888888


Q ss_pred             CCeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCce
Q 010579          163 NMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  233 (507)
Q Consensus       163 N~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~  233 (507)
                      .+.|+.+|...   +.++....               .......+++ .+++.++++-..++.|+.++.....+
T Consensus       247 d~~v~iwd~~~~~~~~~~~~~~---------------~~~~v~~~~~-s~~g~~l~~g~~d~~i~vwd~~~~~~  304 (340)
T 1got_B          247 DATCRLFDLRADQELMTYSHDN---------------IICGITSVSF-SKSGRLLLAGYDDFNCNVWDALKADR  304 (340)
T ss_dssp             TSCEEEEETTTTEEEEEECCTT---------------CCSCEEEEEE-CTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             CCcEEEEECCCCcEEEEEccCC---------------cccceEEEEE-CCCCCEEEEECCCCeEEEEEcccCcE
Confidence            88999999543   22321100               0112345554 56777777777778888888765544

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=94.91  E-value=4  Score=41.99  Aligned_cols=75  Identities=15%  Similarity=0.217  Sum_probs=53.5

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  163 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N  163 (507)
                      ...+|+++++|.++++-...+.|+.++.++   ..+..+.+..                ....+|++++++.++++-..+
T Consensus       387 ~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~---~~~~~~~~~~----------------~~v~~~~~s~d~~~l~~~~~d  447 (577)
T 2ymu_A          387 SVRGVAFSPDGQTIASASDDKTVKLWNRNG---QLLQTLTGHS----------------SSVWGVAFSPDDQTIASASDD  447 (577)
T ss_dssp             CEEEEEECTTSSCEEEEETTSEEEEECTTC---CEEEEEECCS----------------SCEEEEEECTTSSEEEEEETT
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEeCCC---CEEEEecCCC----------------CCeEEEEECCCCCEEEEEcCC
Confidence            567899999998877777778999998752   2233333221                134579999999988777778


Q ss_pred             CeEEEEcCCC--cEEE
Q 010579          164 MAIRKISDTG--VTTI  177 (507)
Q Consensus       164 ~rIrk~d~~G--VstI  177 (507)
                      +.|+.++.++  +.++
T Consensus       448 ~~v~~w~~~~~~~~~~  463 (577)
T 2ymu_A          448 KTVKLWNRNGQLLQTL  463 (577)
T ss_dssp             SEEEEEETTSCEEEEE
T ss_pred             CEEEEEECCCCEEEEE
Confidence            8899998766  4444

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=94.69  E-value=2.1  Score=42.39  Aligned_cols=116  Identities=11%  Similarity=0.085  Sum_probs=74.2

Q ss_pred             eeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeCC
Q 010579           85 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTM  162 (507)
Q Consensus        85 P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs~  162 (507)
                      -..|+++++|.++++-+..+.|+.++...   ++. .++.|.                -.....+++.++|. ++++=+.
T Consensus       130 V~~v~~spdg~~l~sgs~d~~i~iwd~~~---~~~~~~~~~h----------------~~~V~~~~~~~~~~~~l~s~s~  190 (344)
T 4gqb_B          130 VSTVSVLSSGTQAVSGSKDICIKVWDLAQ---QVVLSSYRAH----------------AAQVTCVAASPHKDSVFLSCSE  190 (344)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTT---TEEEEEECCC----------------SSCEEEEEECSSCTTEEEEEET
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCC---CcEEEEEcCc----------------CCceEEEEecCCCCCceeeecc
Confidence            46899999999988888889999999862   333 222221                12345788988874 7777777


Q ss_pred             CCeEEEEcCC-C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCcee
Q 010579          163 NMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS  234 (507)
Q Consensus       163 N~rIrk~d~~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~  234 (507)
                      .+.|+.+|.. +  +.++....               .-.....+++.+.++.++++-..++.|+.+++....|.
T Consensus       191 D~~v~iwd~~~~~~~~~~~~~~---------------~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~  250 (344)
T 4gqb_B          191 DNRILLWDTRCPKPASQIGCSA---------------PGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV  250 (344)
T ss_dssp             TSCEEEEETTSSSCEEECC-------------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CC
T ss_pred             ccccccccccccceeeeeecce---------------eeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEE
Confidence            7889999843 3  33331110               00123456655556777777777788888888766554

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=94.37  E-value=1.9  Score=42.78  Aligned_cols=122  Identities=11%  Similarity=0.015  Sum_probs=79.7

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  163 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N  163 (507)
                      .-..|++.|+|.++++-+..+.|+.++...   +............        ..........++++++|.++++-+.+
T Consensus       251 ~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~---~~~~~~~~~~~~~--------~~~~~~~v~~~~~s~~g~~l~~g~~d  319 (380)
T 3iz6_a          251 DINSVKFFPDGQRFGTGSDDGTCRLFDMRT---GHQLQVYNREPDR--------NDNELPIVTSVAFSISGRLLFAGYSN  319 (380)
T ss_dssp             CCCEEEECTTSSEEEEECSSSCEEEEETTT---TEEEEEECCCCSS--------SCCSSCSCSEEEECSSSSEEEEECTT
T ss_pred             CeEEEEEecCCCeEEEEcCCCeEEEEECCC---CcEEEEecccccc--------cccccCceEEEEECCCCCEEEEEECC
Confidence            356899999999999988889999999862   3322222111000        01123345789999999999988889


Q ss_pred             CeEEEEcCC-C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCC
Q 010579          164 MAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  230 (507)
Q Consensus       164 ~rIrk~d~~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~  230 (507)
                      +.|+.+|.. +  +..+..-..    +         .-..-.++++ .++|.++++-...+.|+..++.+
T Consensus       320 g~i~vwd~~~~~~~~~~~~~~~----~---------h~~~v~~l~~-s~dg~~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          320 GDCYVWDTLLAEMVLNLGTLQN----S---------HEGRISCLGL-SSDGSALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             SCEEEEETTTCCEEEEECCSCS----S---------CCCCCCEEEE-CSSSSEEEEECTTSCEEEEECCS
T ss_pred             CCEEEEECCCCceEEEEecccC----C---------CCCceEEEEE-CCCCCEEEEeeCCCCEEEEecCC
Confidence            999999953 3  333311100    0         1113456774 67888888888888999888764

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=94.30  E-value=3.5  Score=38.56  Aligned_cols=113  Identities=11%  Similarity=0.126  Sum_probs=71.6

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  163 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N  163 (507)
                      ....++++++|.++++-..++.|+.++...   +........               .-.....++++++|+++++-+.+
T Consensus       143 ~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~---~~~~~~~~~---------------~~~~i~~~~~~~~~~~l~~~~~d  204 (337)
T 1gxr_A          143 ACYALAISPDSKVCFSCCSDGNIAVWDLHN---QTLVRQFQG---------------HTDGASCIDISNDGTKLWTGGLD  204 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTT---TEEEEEECC---------------CSSCEEEEEECTTSSEEEEEETT
T ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCC---Cceeeeeec---------------ccCceEEEEECCCCCEEEEEecC
Confidence            467899999998777777788999999762   332222111               01246789999999877777778


Q ss_pred             CeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCce
Q 010579          164 MAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  233 (507)
Q Consensus       164 ~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~  233 (507)
                      +.|+.+|...   +..+...                  .....+++ .+++.++++-..++.|+.+++.....
T Consensus       205 g~i~~~d~~~~~~~~~~~~~------------------~~v~~~~~-s~~~~~l~~~~~~~~i~~~~~~~~~~  258 (337)
T 1gxr_A          205 NTVRSWDLREGRQLQQHDFT------------------SQIFSLGY-CPTGEWLAVGMESSNVEVLHVNKPDK  258 (337)
T ss_dssp             SEEEEEETTTTEEEEEEECS------------------SCEEEEEE-CTTSSEEEEEETTSCEEEEETTSSCE
T ss_pred             CcEEEEECCCCceEeeecCC------------------CceEEEEE-CCCCCEEEEEcCCCcEEEEECCCCCe
Confidence            8999999543   2222110                  12344553 45555555555567777777766544

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=94.27  E-value=1.5  Score=48.55  Aligned_cols=115  Identities=4%  Similarity=-0.015  Sum_probs=68.8

Q ss_pred             CCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           83 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      ..-..|+.|++|.|||.-.  +.+.+++..   .++...+....       ..     .......|+.|++|+|||+-. 
T Consensus        88 n~I~~i~~d~~g~lWigT~--~Gl~~yd~~---~~~f~~~~~~~-------~~-----~~~~i~~i~~d~~g~lwi~t~-  149 (795)
T 4a2l_A           88 DISRIVKTDSQGRVWIGTR--DGLSRYDEE---KDIFQNFFYEK-------NG-----KHLQVNGIEEISPEQLLISTP-  149 (795)
T ss_dssp             SCEEEEEECTTSCEEEEES--SCEEEEETT---TTEEEEECCEE-------TT-----EECCCCEEEEEETTEEEEEET-
T ss_pred             cceeEEEECCCCCEEEEeC--CchheeCCC---CCeEEeccccc-------cC-----CCceEEEEEECCCCCEEEEEC-
Confidence            4566889999999999864  468999875   23444332110       00     001156799999999999875 


Q ss_pred             CCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCC-CceEEEEcCCCeEEEEeCCCCeEEEEECCCCce
Q 010579          163 NMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSN-DFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  233 (507)
Q Consensus       163 N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~-P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~  233 (507)
                       +.|.+++...  +..+..           +.    .... ...|+ .+.++.|||....+ .|.++++.+..+
T Consensus       150 -~gl~~~~~~~~~~~~~~~-----------~~----~~~~~i~~i~-~d~~g~lwigt~~~-Gl~~~~~~~~~~  205 (795)
T 4a2l_A          150 -EGLIMFDIKESKFIDDSF-----------ST----AMHKTIASTL-YRQGDQIYIGTSTD-GLYTYSITQKTF  205 (795)
T ss_dssp             -TEEEEEETTTTEEECSSS-----------CH----HHHTCCEEEE-EEETTEEEEEESSS-CEEEEETTTCCE
T ss_pred             -CceEEEECCCCEEEeccC-----------CC----CCCcceEEEE-ECCCCCEEEEECCC-CEEEEeCCCCeE
Confidence             5688888543  221110           00    0011 34554 56788898876433 477777655443

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=94.14  E-value=4.7  Score=40.76  Aligned_cols=114  Identities=18%  Similarity=0.238  Sum_probs=66.1

Q ss_pred             CeeEEEEcCCCc-EEEEeCC--CCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEE
Q 010579           84 EPFSVAVSPSGE-LLVLDSE--NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIA  159 (507)
Q Consensus        84 ~P~gIaVd~dG~-LYVaDs~--n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVA  159 (507)
                      ....++++|||. |+++...  +..|+.++..+   ++...+.+..                .....++++|||+ |+++
T Consensus       180 ~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~t---g~~~~l~~~~----------------~~~~~~~~spdg~~la~~  240 (415)
T 2hqs_A          180 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN---GAVRQVASFP----------------RHNGAPAFSPDGSKLAFA  240 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTT---CCEEEEECCS----------------SCEEEEEECTTSSEEEEE
T ss_pred             cceeeEEcCCCCEEEEEEecCCCcEEEEEECCC---CcEEEeecCC----------------CcccCEEEcCCCCEEEEE
Confidence            356889999997 4444332  35999999873   4444443321                1356899999998 5545


Q ss_pred             eC--CCCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCe-EEEEeC--CCCeEEEEECCCCc
Q 010579          160 DT--MNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCS-LLVIDR--GNQAIREIQLHDDD  232 (507)
Q Consensus       160 Ds--~N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~-LyVaD~--gn~rIr~I~l~~~~  232 (507)
                      -.  ++..|+.++..+  +..+.+..                 .....+++ .++|. |+++..  +..+|+.+++.+..
T Consensus       241 ~~~~g~~~i~~~d~~~~~~~~l~~~~-----------------~~~~~~~~-spdg~~l~~~s~~~g~~~i~~~d~~~~~  302 (415)
T 2hqs_A          241 LSKTGSLNLYVMDLASGQIRQVTDGR-----------------SNNTEPTW-FPDSQNLAFTSDQAGRPQVYKVNINGGA  302 (415)
T ss_dssp             ECTTSSCEEEEEETTTCCEEECCCCS-----------------SCEEEEEE-CTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred             EecCCCceEEEEECCCCCEEeCcCCC-----------------CcccceEE-CCCCCEEEEEECCCCCcEEEEEECCCCC
Confidence            43  245799998543  43332210                 12234554 44444 554442  33478888887765


Q ss_pred             ee
Q 010579          233 CS  234 (507)
Q Consensus       233 ~~  234 (507)
                      +.
T Consensus       303 ~~  304 (415)
T 2hqs_A          303 PQ  304 (415)
T ss_dssp             CE
T ss_pred             EE
Confidence            43

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=94.11  E-value=4.2  Score=44.78  Aligned_cols=126  Identities=10%  Similarity=0.051  Sum_probs=80.1

Q ss_pred             CCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           83 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      ....+|+.|++|+|||+-.. +.|.++++.+   +.+..+.. .       ++.    .-+....|+.|++|+|||+.. 
T Consensus       495 ~~i~~i~~d~~g~lWigt~~-~Gl~~~~~~~---~~~~~~~~-~-------~~l----~~~~i~~i~~d~~g~lWi~T~-  557 (781)
T 3v9f_A          495 NFVRSIAQDSEGRFWIGTFG-GGVGIYTPDM---QLVRKFNQ-Y-------EGF----CSNTINQIYRSSKGQMWLATG-  557 (781)
T ss_dssp             SCEEEEEECTTCCEEEEESS-SCEEEECTTC---CEEEEECT-T-------TTC----SCSCEEEEEECTTSCEEEEET-
T ss_pred             ceeEEEEEcCCCCEEEEEcC-CCEEEEeCCC---CeEEEccC-C-------CCC----CCCeeEEEEECCCCCEEEEEC-
Confidence            46788999999999999754 4588898762   34443321 1       110    123567899999999999976 


Q ss_pred             CCeE-EEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee-CCC
Q 010579          163 NMAI-RKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD-NYD  238 (507)
Q Consensus       163 N~rI-rk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~-~~~  238 (507)
                       ..+ .+++...  +..+. ..        +|...    +...+|+ .|.+|+||++.  ++-|.++++....+.. ...
T Consensus       558 -~Glv~~~d~~~~~~~~~~-~~--------~gl~~----~~i~~i~-~d~~g~lW~~t--~~Gl~~~~~~~~~~~~~~~~  620 (781)
T 3v9f_A          558 -EGLVCFPSARNFDYQVFQ-RK--------EGLPN----THIRAIS-EDKNGNIWAST--NTGISCYITSKKCFYTYDHS  620 (781)
T ss_dssp             -TEEEEESCTTTCCCEEEC-GG--------GTCSC----CCCCEEE-ECSSSCEEEEC--SSCEEEEETTTTEEEEECGG
T ss_pred             -CCceEEECCCCCcEEEcc-cc--------CCCCC----ceEEEEE-ECCCCCEEEEc--CCceEEEECCCCceEEeccc
Confidence             345 8888644  44431 11        12111    1234666 68899999996  4559999988765543 333


Q ss_pred             CCcc
Q 010579          239 DTFH  242 (507)
Q Consensus       239 ~G~p  242 (507)
                      .|++
T Consensus       621 dGl~  624 (781)
T 3v9f_A          621 NNIP  624 (781)
T ss_dssp             GTCC
T ss_pred             CCcc
Confidence            4544

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=94.09  E-value=1.1  Score=44.71  Aligned_cols=113  Identities=16%  Similarity=0.121  Sum_probs=74.2

Q ss_pred             eeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCC
Q 010579           85 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM  164 (507)
Q Consensus        85 P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~  164 (507)
                      -..|+++++|.++++-...+.|+.++...   ++......      |+         -.....|++.++|+.+++-+..+
T Consensus       126 v~~v~~s~dg~~l~s~~~d~~i~iwd~~~---~~~~~~~~------~h---------~~~v~~~~~~p~~~~l~s~s~d~  187 (393)
T 1erj_A          126 IRSVCFSPDGKFLATGAEDRLIRIWDIEN---RKIVMILQ------GH---------EQDIYSLDYFPSGDKLVSGSGDR  187 (393)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTT---TEEEEEEC------CC---------SSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEECCC---CcEEEEEc------cC---------CCCEEEEEEcCCCCEEEEecCCC
Confidence            45899999999888888889999999862   33322221      11         12356899999999888877888


Q ss_pred             eEEEEcCC-C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCce
Q 010579          165 AIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  233 (507)
Q Consensus       165 rIrk~d~~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~  233 (507)
                      .|+.+|.. +  +.++...                  .....+++.+.++.++++-...+.|+.+++....+
T Consensus       188 ~v~iwd~~~~~~~~~~~~~------------------~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~  241 (393)
T 1erj_A          188 TVRIWDLRTGQCSLTLSIE------------------DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL  241 (393)
T ss_dssp             EEEEEETTTTEEEEEEECS------------------SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCE
T ss_pred             cEEEEECCCCeeEEEEEcC------------------CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcE
Confidence            99999843 3  2233110                  01234554334677777777777888888766544

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=93.93  E-value=4.2  Score=44.70  Aligned_cols=129  Identities=8%  Similarity=0.052  Sum_probs=80.7

Q ss_pred             CCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           83 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      .....|+.|++|+|||+-.  +.|.++++..   +++..+....       +..   ..-+....|+.|++|+|||+-.+
T Consensus       450 ~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~---~~~~~~~~~~-------~~~---~~~~~i~~i~~d~~g~lWigt~~  514 (781)
T 3v9f_A          450 LDVRVFYEDKNKKIWIGTH--AGVFVIDLAS---KKVIHHYDTS-------NSQ---LLENFVRSIAQDSEGRFWIGTFG  514 (781)
T ss_dssp             CCEEEEEECTTSEEEEEET--TEEEEEESSS---SSCCEEECTT-------TSS---CSCSCEEEEEECTTCCEEEEESS
T ss_pred             CeEEEEEECCCCCEEEEEC--CceEEEeCCC---CeEEecccCc-------ccc---cccceeEEEEEcCCCCEEEEEcC
Confidence            4567899999999999975  5899999863   3343332111       000   01246789999999999999763


Q ss_pred             CCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee-CCCC
Q 010579          163 NMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD-NYDD  239 (507)
Q Consensus       163 N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~-~~~~  239 (507)
                      + .|.+++.++  +..+.. .        ++..    -+...+|+ .|.+|.|||+.. ++.|.++++.+..+.. ....
T Consensus       515 ~-Gl~~~~~~~~~~~~~~~-~--------~~l~----~~~i~~i~-~d~~g~lWi~T~-~Glv~~~d~~~~~~~~~~~~~  578 (781)
T 3v9f_A          515 G-GVGIYTPDMQLVRKFNQ-Y--------EGFC----SNTINQIY-RSSKGQMWLATG-EGLVCFPSARNFDYQVFQRKE  578 (781)
T ss_dssp             S-CEEEECTTCCEEEEECT-T--------TTCS----CSCEEEEE-ECTTSCEEEEET-TEEEEESCTTTCCCEEECGGG
T ss_pred             C-CEEEEeCCCCeEEEccC-C--------CCCC----CCeeEEEE-ECCCCCEEEEEC-CCceEEECCCCCcEEEccccC
Confidence            3 488898654  343321 0        1111    12335665 688999999987 5554888887654432 3334


Q ss_pred             Ccc
Q 010579          240 TFH  242 (507)
Q Consensus       240 G~p  242 (507)
                      |+|
T Consensus       579 gl~  581 (781)
T 3v9f_A          579 GLP  581 (781)
T ss_dssp             TCS
T ss_pred             CCC
Confidence            444

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=93.83  E-value=5.1  Score=39.52  Aligned_cols=80  Identities=11%  Similarity=0.019  Sum_probs=53.3

Q ss_pred             CcceEEEcCCCCEEEEeCCCCeEEEEcCC-C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCC
Q 010579          144 HPKGLAVDDRGNIYIADTMNMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN  220 (507)
Q Consensus       144 ~P~GIaVd~dGnIYVADs~N~rIrk~d~~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn  220 (507)
                      ....|+++++|+.+++=+..+.|+.+|.. +  +.++.....     .     ..........+++ ..+|.++++-..+
T Consensus       251 ~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~-----~-----~~~~~~~v~~~~~-s~~g~~l~~g~~d  319 (380)
T 3iz6_a          251 DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPD-----R-----NDNELPIVTSVAF-SISGRLLFAGYSN  319 (380)
T ss_dssp             CCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCS-----S-----SCCSSCSCSEEEE-CSSSSEEEEECTT
T ss_pred             CeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccc-----c-----cccccCceEEEEE-CCCCCEEEEEECC
Confidence            35689999999999988888899999953 4  333322110     0     0111223456774 6778888888888


Q ss_pred             CeEEEEECCCCcee
Q 010579          221 QAIREIQLHDDDCS  234 (507)
Q Consensus       221 ~rIr~I~l~~~~~~  234 (507)
                      +.|+.++.....+.
T Consensus       320 g~i~vwd~~~~~~~  333 (380)
T 3iz6_a          320 GDCYVWDTLLAEMV  333 (380)
T ss_dssp             SCEEEEETTTCCEE
T ss_pred             CCEEEEECCCCceE
Confidence            99999988765543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=93.72  E-value=1.6  Score=43.11  Aligned_cols=117  Identities=12%  Similarity=0.137  Sum_probs=74.1

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEe---
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIAD---  160 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVAD---  160 (507)
                      ....|+++++|.++++-+..+.|+.++...   +........     ++ .       -..+..+++.++|.++++-   
T Consensus       178 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~-----~~-~-------~~~~~~~~~~~~~~~l~~g~~~  241 (402)
T 2aq5_A          178 TIYSVDWSRDGALICTSCRDKRVRVIEPRK---GTVVAEKDR-----PH-E-------GTRPVHAVFVSEGKILTTGFSR  241 (402)
T ss_dssp             CEEEEEECTTSSCEEEEETTSEEEEEETTT---TEEEEEEEC-----SS-C-------SSSCCEEEECSTTEEEEEEECT
T ss_pred             ceEEEEECCCCCEEEEEecCCcEEEEeCCC---Cceeeeecc-----CC-C-------CCcceEEEEcCCCcEEEEeccC
Confidence            457788888888777766778888888752   332222100     00 0       0135789999999877776   


Q ss_pred             CCCCeEEEEcCCC----cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCc
Q 010579          161 TMNMAIRKISDTG----VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD  232 (507)
Q Consensus       161 s~N~rIrk~d~~G----VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~  232 (507)
                      ..++.|+.+|...    +.+.....                -.....+++.++...|+++....+.|+.+++....
T Consensus       242 ~~d~~i~iwd~~~~~~~~~~~~~~~----------------~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          242 MSERQVALWDTKHLEEPLSLQELDT----------------SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             TCCEEEEEEETTBCSSCSEEEECCC----------------CSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred             CCCceEEEEcCccccCCceEEeccC----------------CCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence            5678899999543    22221100                11245667655556677788788899999987755

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=93.66  E-value=5.4  Score=38.55  Aligned_cols=114  Identities=12%  Similarity=0.209  Sum_probs=76.0

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccE-EEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPK-LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~-~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      ....++++|+|.++++-...+.|..++...   +... .+.+.                -.....++++++|+++++=..
T Consensus       124 ~~~~~~~spdg~~l~~g~~dg~v~i~~~~~---~~~~~~~~~~----------------~~~v~~~~~spdg~~lasg~~  184 (321)
T 3ow8_A          124 DAWTLAFSPDSQYLATGTHVGKVNIFGVES---GKKEYSLDTR----------------GKFILSIAYSPDGKYLASGAI  184 (321)
T ss_dssp             CCCCEEECTTSSEEEEECTTSEEEEEETTT---CSEEEEEECS----------------SSCEEEEEECTTSSEEEEEET
T ss_pred             cEEEEEECCCCCEEEEEcCCCcEEEEEcCC---CceeEEecCC----------------CceEEEEEECCCCCEEEEEcC
Confidence            345789999999888888889999998762   2222 22111                123568999999998887777


Q ss_pred             CCeEEEEcCC-C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCcee
Q 010579          163 NMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS  234 (507)
Q Consensus       163 N~rIrk~d~~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~  234 (507)
                      ++.|+.+|.. +  +.++.+-.                 .....+++ .+++.++++-...+.|+.+++....+.
T Consensus       185 dg~i~iwd~~~~~~~~~~~~h~-----------------~~v~~l~~-spd~~~l~s~s~dg~i~iwd~~~~~~~  241 (321)
T 3ow8_A          185 DGIINIFDIATGKLLHTLEGHA-----------------MPIRSLTF-SPDSQLLVTASDDGYIKIYDVQHANLA  241 (321)
T ss_dssp             TSCEEEEETTTTEEEEEECCCS-----------------SCCCEEEE-CTTSCEEEEECTTSCEEEEETTTCCEE
T ss_pred             CCeEEEEECCCCcEEEEEcccC-----------------CceeEEEE-cCCCCEEEEEcCCCeEEEEECCCccee
Confidence            8889999943 4  33442210                 12345664 567777777777788888888765544

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=93.57  E-value=5.7  Score=38.54  Aligned_cols=112  Identities=9%  Similarity=0.009  Sum_probs=74.9

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs~  162 (507)
                      ....+++.++|.++++-...+.|+.++..+   ..+..+.+.                -.....|+++++|. ++++-+.
T Consensus       165 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~h----------------~~~v~~~~~~~~~~~~l~s~~~  225 (383)
T 3ei3_B          165 WYCCVDVSVSRQMLATGDSTGRLLLLGLDG---HEIFKEKLH----------------KAKVTHAEFNPRCDWLMATSSV  225 (383)
T ss_dssp             CEEEEEEETTTTEEEEEETTSEEEEEETTS---CEEEEEECS----------------SSCEEEEEECSSCTTEEEEEET
T ss_pred             CeEEEEECCCCCEEEEECCCCCEEEEECCC---CEEEEeccC----------------CCcEEEEEECCCCCCEEEEEeC
Confidence            367888999988888877888999998752   223333221                13456899999998 8887777


Q ss_pred             CCeEEEEcCC-----C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcC-CCeEEEEeCCCCeEEEEECCCCce
Q 010579          163 NMAIRKISDT-----G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGS-SCSLLVIDRGNQAIREIQLHDDDC  233 (507)
Q Consensus       163 N~rIrk~d~~-----G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~-~G~LyVaD~gn~rIr~I~l~~~~~  233 (507)
                      .+.|+.+|..     +  +.++ +.                 -.....|++ .+ ++.++++-...+.|+.+++....+
T Consensus       226 d~~i~iwd~~~~~~~~~~~~~~-~~-----------------~~~v~~~~~-s~~~~~~l~~~~~d~~i~iwd~~~~~~  285 (383)
T 3ei3_B          226 DATVKLWDLRNIKDKNSYIAEM-PH-----------------EKPVNAAYF-NPTDSTKLLTTDQRNEIRVYSSYDWSK  285 (383)
T ss_dssp             TSEEEEEEGGGCCSTTCEEEEE-EC-----------------SSCEEEEEE-CTTTSCEEEEEESSSEEEEEETTBTTS
T ss_pred             CCEEEEEeCCCCCcccceEEEe-cC-----------------CCceEEEEE-cCCCCCEEEEEcCCCcEEEEECCCCcc
Confidence            8889999832     2  2222 10                 113356665 45 677666666778899998876543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=93.41  E-value=1.5  Score=43.28  Aligned_cols=118  Identities=11%  Similarity=0.020  Sum_probs=74.6

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs~  162 (507)
                      .-..|++.|+|.++++-...+.|+.++...   +......-      ++         -.....|++.+++. ++++-..
T Consensus       141 ~V~~v~~spdg~~l~sgs~dg~v~iwd~~~---~~~~~~~~------~h---------~~~v~~v~~s~~~~~~~~s~~~  202 (357)
T 4g56_B          141 IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ---KAVLKSYN------AH---------SSEVNCVAACPGKDTIFLSCGE  202 (357)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCEEEEETTT---TEEEEEEC------CC---------SSCEEEEEECTTCSSCEEEEET
T ss_pred             CEEEEEECCCCCEEEEEeCCCeEEEEECCC---CcEEEEEc------CC---------CCCEEEEEEccCCCceeeeecc
Confidence            346789999999888888889999999762   33222211      11         12356788988775 7777777


Q ss_pred             CCeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCcee
Q 010579          163 NMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS  234 (507)
Q Consensus       163 N~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~  234 (507)
                      ++.|+.+|...   +..+...               ..-..+..|++.+.++.++++-..++.|+.+++....+.
T Consensus       203 dg~v~~wd~~~~~~~~~~~~~---------------~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~  262 (357)
T 4g56_B          203 DGRILLWDTRKPKPATRIDFC---------------ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA  262 (357)
T ss_dssp             TSCEEECCTTSSSCBCBCCCT---------------TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGC
T ss_pred             CCceEEEECCCCceeeeeeec---------------cccccccchhhhhcccceEEEeecccceeEEECCCCcEe
Confidence            78899988432   1111110               001134566665555677776666788888888765543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=93.37  E-value=1.7  Score=43.00  Aligned_cols=118  Identities=13%  Similarity=0.144  Sum_probs=71.5

Q ss_pred             CeeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCC-----CccEEEecCCCCccccCCCCcccccCCCcceEEEcCCC-CE
Q 010579           84 EPFSVAVSP-SGELLVLDSENSNIYKISTSLSPY-----SRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRG-NI  156 (507)
Q Consensus        84 ~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~-----g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dG-nI  156 (507)
                      .-..|++++ +++++++-+..+.|+.++......     ..+..+.+.                -.....|++.++| ++
T Consensus        83 ~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h----------------~~~v~~~~~~p~~~~~  146 (402)
T 2aq5_A           83 PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH----------------TKRVGIVAWHPTAQNV  146 (402)
T ss_dssp             CEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECC----------------SSCEEEEEECSSBTTE
T ss_pred             CEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCC----------------CCeEEEEEECcCCCCE
Confidence            457899999 888888888889999999763210     112222221                1345689999998 67


Q ss_pred             EEEeCCCCeEEEEcCC-C--cEEEe-cCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCc
Q 010579          157 YIADTMNMAIRKISDT-G--VTTIA-GGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD  232 (507)
Q Consensus       157 YVADs~N~rIrk~d~~-G--VstIa-GG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~  232 (507)
                      +++-+..+.|+.+|.. +  +.++. .+.                -....++++ .+++.++++-...+.|+.+++....
T Consensus       147 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----------------~~~v~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~  209 (402)
T 2aq5_A          147 LLSAGCDNVILVWDVGTGAAVLTLGPDVH----------------PDTIYSVDW-SRDGALICTSCRDKRVRVIEPRKGT  209 (402)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECTTTC----------------CSCEEEEEE-CTTSSCEEEEETTSEEEEEETTTTE
T ss_pred             EEEEcCCCEEEEEECCCCCccEEEecCCC----------------CCceEEEEE-CCCCCEEEEEecCCcEEEEeCCCCc
Confidence            7776677789999843 3  33331 110                012345553 4455555554556677777766655


Q ss_pred             ee
Q 010579          233 CS  234 (507)
Q Consensus       233 ~~  234 (507)
                      +.
T Consensus       210 ~~  211 (402)
T 2aq5_A          210 VV  211 (402)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=93.31  E-value=4.4  Score=38.31  Aligned_cols=72  Identities=8%  Similarity=0.049  Sum_probs=50.6

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  163 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N  163 (507)
                      ....++++++|.++++-..++.|+.++..... ..+..+.+.                -.....++++++|+++++-+.+
T Consensus       177 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~----------------~~~v~~~~~~~~~~~l~~~~~d  239 (369)
T 3zwl_B          177 AATVAGWSTKGKYIIAGHKDGKISKYDVSNNY-EYVDSIDLH----------------EKSISDMQFSPDLTYFITSSRD  239 (369)
T ss_dssp             CEEEEEECGGGCEEEEEETTSEEEEEETTTTT-EEEEEEECC----------------SSCEEEEEECTTSSEEEEEETT
T ss_pred             ceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc-EeEEEEecC----------------CCceeEEEECCCCCEEEEecCC
Confidence            67788999999877777778999999986210 112222211                1245689999999977777778


Q ss_pred             CeEEEEcCC
Q 010579          164 MAIRKISDT  172 (507)
Q Consensus       164 ~rIrk~d~~  172 (507)
                      +.|+.+|..
T Consensus       240 ~~i~v~d~~  248 (369)
T 3zwl_B          240 TNSFLVDVS  248 (369)
T ss_dssp             SEEEEEETT
T ss_pred             ceEEEEECC
Confidence            889999943

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=93.24  E-value=5.6  Score=37.46  Aligned_cols=114  Identities=18%  Similarity=0.239  Sum_probs=73.2

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEE-EecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKL-VAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~-vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      .-..|+++++|.++++-...+.|+.++...   +.... +.+.                -.....|+++++|+++++=..
T Consensus        25 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~---~~~~~~~~~h----------------~~~v~~~~~~~~~~~l~s~~~   85 (312)
T 4ery_A           25 AVSSVKFSPNGEWLASSSADKLIKIWGAYD---GKFEKTISGH----------------KLGISDVAWSSDSNLLVSASD   85 (312)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTT---CCEEEEECCC----------------SSCEEEEEECTTSSEEEEEET
T ss_pred             cEEEEEECCCCCEEEEeeCCCeEEEEeCCC---cccchhhccC----------------CCceEEEEEcCCCCEEEEECC
Confidence            456899999999888877788999998752   33322 2211                123568999999998888777


Q ss_pred             CCeEEEEcCC-C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCcee
Q 010579          163 NMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS  234 (507)
Q Consensus       163 N~rIrk~d~~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~  234 (507)
                      ++.|+.++.. +  +.++.+..                 ..-..+++ .+++.++++-...+.|+.+++....+.
T Consensus        86 d~~i~vwd~~~~~~~~~~~~~~-----------------~~v~~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~  142 (312)
T 4ery_A           86 DKTLKIWDVSSGKCLKTLKGHS-----------------NYVFCCNF-NPQSNLIVSGSFDESVRIWDVKTGKCL  142 (312)
T ss_dssp             TSEEEEEETTTCCEEEEEECCS-----------------SCEEEEEE-CSSSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             CCEEEEEECCCCcEEEEEcCCC-----------------CCEEEEEE-cCCCCEEEEEeCCCcEEEEECCCCEEE
Confidence            8889999843 3  44443211                 01234443 455566666556677777777665544

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=93.24  E-value=6.4  Score=38.09  Aligned_cols=109  Identities=6%  Similarity=0.054  Sum_probs=69.6

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  163 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N  163 (507)
                      ....|+++|+|+++++-+..+.|+.++...   +.........             ........++++++|.++++=+.+
T Consensus       228 ~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~---~~~~~~~~~~-------------~~~~~v~~~~~s~~g~~l~~g~~d  291 (340)
T 1got_B          228 DINAICFFPNGNAFATGSDDATCRLFDLRA---DQELMTYSHD-------------NIICGITSVSFSKSGRLLLAGYDD  291 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTT---TEEEEEECCT-------------TCCSCEEEEEECTTSSEEEEEETT
T ss_pred             CEEEEEEcCCCCEEEEEcCCCcEEEEECCC---CcEEEEEccC-------------CcccceEEEEECCCCCEEEEECCC
Confidence            467899999999988888889999999762   2222211110             011235689999999988888888


Q ss_pred             CeEEEEcCC-C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEE
Q 010579          164 MAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI  226 (507)
Q Consensus       164 ~rIrk~d~~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I  226 (507)
                      +.|+.+|.. +  +.++.+-.                 ..-.+|++ .+++.++++-...+.|+..
T Consensus       292 ~~i~vwd~~~~~~~~~~~~h~-----------------~~v~~~~~-s~dg~~l~s~s~D~~i~iW  339 (340)
T 1got_B          292 FNCNVWDALKADRAGVLAGHD-----------------NRVSCLGV-TDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             SEEEEEETTTCCEEEEEECCS-----------------SCEEEEEE-CTTSSCEEEEETTSCEEEE
T ss_pred             CeEEEEEcccCcEeeEeecCC-----------------CcEEEEEE-cCCCCEEEEEcCCccEEec
Confidence            899999943 3  44443211                 12235554 5566655555555666554

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=93.16  E-value=3.4  Score=41.76  Aligned_cols=116  Identities=12%  Similarity=0.170  Sum_probs=71.0

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCc--cEEEecCCCCccccCCCCcccccCCCcceEEEcCC---CCEEE
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSR--PKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDR---GNIYI  158 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~--i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~d---GnIYV  158 (507)
                      .+..|+++++|.++++-...+.|+.++........  ...+       .+         .-.....|+++++   |.+++
T Consensus       151 ~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~-------~~---------h~~~v~~~~~sp~~~~~~~l~  214 (450)
T 2vdu_B          151 RPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPI-------LG---------HVSMLTDVHLIKDSDGHQFII  214 (450)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCS-------EE---------CSSCEEEEEEEECTTSCEEEE
T ss_pred             CceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceee-------ec---------ccCceEEEEEcCCCCCCcEEE
Confidence            57899999999866665567899999875211100  0011       11         1234678999999   87666


Q ss_pred             EeCCCCeEEEEcC-CC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCce
Q 010579          159 ADTMNMAIRKISD-TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  233 (507)
Q Consensus       159 ADs~N~rIrk~d~-~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~  233 (507)
                      +-...+.|++++. .+  +.++..+.                -....++++ . ++.++++-...+.|+.+++....+
T Consensus       215 s~~~d~~i~vwd~~~~~~~~~~~~~h----------------~~~v~~~~~-s-d~~~l~s~~~d~~v~vwd~~~~~~  274 (450)
T 2vdu_B          215 TSDRDEHIKISHYPQCFIVDKWLFGH----------------KHFVSSICC-G-KDYLLLSAGGDDKIFAWDWKTGKN  274 (450)
T ss_dssp             EEETTSCEEEEEESCTTCEEEECCCC----------------SSCEEEEEE-C-STTEEEEEESSSEEEEEETTTCCE
T ss_pred             EEcCCCcEEEEECCCCceeeeeecCC----------------CCceEEEEE-C-CCCEEEEEeCCCeEEEEECCCCcE
Confidence            6556778888883 33  33332111                113456665 4 666666666778888888765443

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=93.13  E-value=5  Score=40.23  Aligned_cols=116  Identities=17%  Similarity=0.171  Sum_probs=78.1

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  163 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N  163 (507)
                      .-..|+++++|.++++-+..+.|+.++..+   +......      .|+         -.....++++++|+.+++=+..
T Consensus       152 ~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~---~~~~~~~------~~h---------~~~V~~v~~~p~~~~l~s~s~D  213 (410)
T 1vyh_C          152 SVQDISFDHSGKLLASCSADMTIKLWDFQG---FECIRTM------HGH---------DHNVSSVSIMPNGDHIVSASRD  213 (410)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCCCEEETTS---SCEEECC------CCC---------SSCEEEEEECSSSSEEEEEETT
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---CceeEEE------cCC---------CCCEEEEEEeCCCCEEEEEeCC
Confidence            456899999999988888889999998762   2211111      111         1235689999999988887788


Q ss_pred             CeEEEEcC-CC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee
Q 010579          164 MAIRKISD-TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD  235 (507)
Q Consensus       164 ~rIrk~d~-~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~  235 (507)
                      +.|+.+|. .+  +.++.+..                 ..-..+. ...++.++++-...+.|+.+++....|..
T Consensus       214 ~~i~~wd~~~~~~~~~~~~h~-----------------~~v~~~~-~~~~g~~l~s~s~D~~v~vwd~~~~~~~~  270 (410)
T 1vyh_C          214 KTIKMWEVQTGYCVKTFTGHR-----------------EWVRMVR-PNQDGTLIASCSNDQTVRVWVVATKECKA  270 (410)
T ss_dssp             SEEEEEETTTCCEEEEEECCS-----------------SCEEEEE-ECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred             CeEEEEECCCCcEEEEEeCCC-----------------ccEEEEE-ECCCCCEEEEEcCCCeEEEEECCCCceee
Confidence            89999994 34  44553311                 0123444 46677777777778889999887766543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=93.08  E-value=1.8  Score=40.99  Aligned_cols=110  Identities=15%  Similarity=0.115  Sum_probs=71.0

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      .-..|+++++|.++++-..++.|+.++...   +.. ..+.+.                -.....|+++++|+++++-..
T Consensus        34 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~---~~~~~~~~~h----------------~~~v~~~~~~~~~~~l~s~~~   94 (369)
T 3zwl_B           34 PLTQVKYNKEGDLLFSCSKDSSASVWYSLN---GERLGTLDGH----------------TGTIWSIDVDCFTKYCVTGSA   94 (369)
T ss_dssp             CEEEEEECTTSCEEEEEESSSCEEEEETTT---CCEEEEECCC----------------SSCEEEEEECTTSSEEEEEET
T ss_pred             eEEEEEEcCCCCEEEEEeCCCEEEEEeCCC---chhhhhhhhc----------------CCcEEEEEEcCCCCEEEEEeC
Confidence            466899999999888777788999998752   332 222211                123568999999997777777


Q ss_pred             CCeEEEEcCC-C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCC-----CeEEEEECCCC
Q 010579          163 NMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN-----QAIREIQLHDD  231 (507)
Q Consensus       163 N~rIrk~d~~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn-----~rIr~I~l~~~  231 (507)
                      ++.|+.++.. +  +.++...                  .....+++ .+++..+++-..+     +.|+.+++...
T Consensus        95 dg~i~iwd~~~~~~~~~~~~~------------------~~v~~~~~-~~~~~~l~~~~~~~~~~~g~i~~~d~~~~  152 (369)
T 3zwl_B           95 DYSIKLWDVSNGQCVATWKSP------------------VPVKRVEF-SPCGNYFLAILDNVMKNPGSINIYEIERD  152 (369)
T ss_dssp             TTEEEEEETTTCCEEEEEECS------------------SCEEEEEE-CTTSSEEEEEECCBTTBCCEEEEEEEEEC
T ss_pred             CCeEEEEECCCCcEEEEeecC------------------CCeEEEEE-ccCCCEEEEecCCccCCCCEEEEEEecCC
Confidence            8889999843 3  3333210                  12345664 4555555555555     77887776554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=93.05  E-value=4.9  Score=42.99  Aligned_cols=118  Identities=9%  Similarity=0.077  Sum_probs=63.9

Q ss_pred             CeeEEEEcCCCc-EEEEeCCC----CeEEEEeCCCCCCC-ccEEEecCCCCccccCCCCcccccCCCcceEEEcC--CCC
Q 010579           84 EPFSVAVSPSGE-LLVLDSEN----SNIYKISTSLSPYS-RPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD--RGN  155 (507)
Q Consensus        84 ~P~gIaVd~dG~-LYVaDs~n----~rI~ki~~~g~~~g-~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~--dGn  155 (507)
                      .+..++++|||. |+++....    ..|+.++..+   + ....+....  .    .     ...+....+++++  ||.
T Consensus       259 ~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~---g~~~~~~~~~~--~----~-----~~~~~~~~~~~sp~~dg~  324 (706)
T 2z3z_A          259 FLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET---GRFVRTLFVET--D----K-----HYVEPLHPLTFLPGSNNQ  324 (706)
T ss_dssp             EEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTT---CCEEEEEEEEE--C----S-----SCCCCCSCCEECTTCSSE
T ss_pred             eEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCC---CceeeEEEEcc--C----C-----CeECccCCceeecCCCCE
Confidence            467899999998 55543221    3888998863   4 333333210  0    0     0112235788998  888


Q ss_pred             EEE-EeC-CCCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCce-EEEEcCCCeEEEEeCCCC----eEEEE
Q 010579          156 IYI-ADT-MNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFD-VVYVGSSCSLLVIDRGNQ----AIREI  226 (507)
Q Consensus       156 IYV-ADs-~N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~g-Ia~vd~~G~LyVaD~gn~----rIr~I  226 (507)
                      +++ ++. +..+|..++.++  +..+..+..                 .... +++.++...||++....+    .|+.+
T Consensus       325 ~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~-----------------~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~  387 (706)
T 2z3z_A          325 FIWQSRRDGWNHLYLYDTTGRLIRQVTKGEW-----------------EVTNFAGFDPKGTRLYFESTEASPLERHFYCI  387 (706)
T ss_dssp             EEEEECTTSSCEEEEEETTSCEEEECCCSSS-----------------CEEEEEEECTTSSEEEEEESSSCTTCBEEEEE
T ss_pred             EEEEEccCCccEEEEEECCCCEEEecCCCCe-----------------EEEeeeEEcCCCCEEEEEecCCCCceEEEEEE
Confidence            444 433 245777887444  444432210                 0112 343333345777665544    78888


Q ss_pred             ECCCCc
Q 010579          227 QLHDDD  232 (507)
Q Consensus       227 ~l~~~~  232 (507)
                      ++.+..
T Consensus       388 d~~~~~  393 (706)
T 2z3z_A          388 DIKGGK  393 (706)
T ss_dssp             ETTCCC
T ss_pred             EcCCCC
Confidence            876644

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=93.03  E-value=1.9  Score=40.61  Aligned_cols=116  Identities=16%  Similarity=0.127  Sum_probs=65.5

Q ss_pred             eeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579           85 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  163 (507)
Q Consensus        85 P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N  163 (507)
                      -..|+++|+|.++++-...+.|+.++...   ... ..+.+.                 .....+++.+++.+..+- ..
T Consensus       218 v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~---~~~~~~~~~~-----------------~~v~~~~~~~~~~~~~~~-~d  276 (340)
T 4aow_A          218 LNTVTVSPDGSLCASGGKDGQAMLWDLNE---GKHLYTLDGG-----------------DIINALCFSPNRYWLCAA-TG  276 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTCEEEEEETTT---TEEEEEEECS-----------------SCEEEEEECSSSSEEEEE-ET
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEEecc---CceeeeecCC-----------------ceEEeeecCCCCceeecc-CC
Confidence            45778888888777777777888887652   221 111111                 234577888887766554 36


Q ss_pred             CeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCC
Q 010579          164 MAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  230 (507)
Q Consensus       164 ~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~  230 (507)
                      +.|+.++..+   +..+......        ....+.-..-.+|++ .+++.++++-...+.|+..++.+
T Consensus       277 ~~i~iwd~~~~~~~~~~~~~~~~--------~~~~~h~~~v~~l~~-s~dg~~l~sgs~Dg~v~iW~~~t  337 (340)
T 4aow_A          277 PSIKIWDLEGKIIVDELKQEVIS--------TSSKAEPPQCTSLAW-SADGQTLFAGYTDNLVRVWQVTI  337 (340)
T ss_dssp             TEEEEEETTTTEEEEEECCC---------------CCCCCEEEEEE-CTTSSEEEEEETTSCEEEEEEEC
T ss_pred             CEEEEEECCCCeEEEecccccee--------eeccCCCCCEEEEEE-CCCCCEEEEEeCCCEEEEEeCCC
Confidence            7788888554   2222111000        000011112346664 67777777766778888887654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=93.01  E-value=9  Score=42.16  Aligned_cols=127  Identities=8%  Similarity=0.056  Sum_probs=79.5

Q ss_pred             CCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           83 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      .....|+.|++|+|||+-.  +.|.+++...   +.+ .+.... ..    ++    ..-+....|+.|++|+|||+-..
T Consensus       498 ~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~---~~~-~~~~~~-~~----~~----l~~~~i~~i~~d~~g~lWigT~~  562 (795)
T 4a2l_A          498 KQITTLFRDSHKRLWIGGE--EGLSVFKQEG---LDI-QKASIL-PV----SN----VTKLFTNCIYEASNGIIWVGTRE  562 (795)
T ss_dssp             CCEEEEEECTTCCEEEEES--SCEEEEEEET---TEE-EECCCS-CS----CG----GGGSCEEEEEECTTSCEEEEESS
T ss_pred             ceEEEEEECCCCCEEEEeC--CceEEEeCCC---CeE-EEecCC-CC----CC----CCCCeeEEEEECCCCCEEEEeCC
Confidence            3567899999999999986  5788988752   333 221100 00    00    01235678999999999999764


Q ss_pred             CCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee-CCCC
Q 010579          163 NMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD-NYDD  239 (507)
Q Consensus       163 N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~-~~~~  239 (507)
                        .|.+++...  +..+ ...        +|...    +...+|+ .|.+|+|||+.  ++-|.++++....+.. ....
T Consensus       563 --Gl~~~d~~~~~~~~~-~~~--------~gl~~----~~i~~i~-~d~~g~lWi~t--~~Gl~~~~~~~~~~~~~~~~d  624 (795)
T 4a2l_A          563 --GFYCFNEKDKQIKRY-NTT--------NGLPN----NVVYGIL-EDSFGRLWLST--NRGISCFNPETEKFRNFTESD  624 (795)
T ss_dssp             --CEEEEETTTTEEEEE-CGG--------GTCSC----SCEEEEE-ECTTSCEEEEE--TTEEEEEETTTTEEEEECGGG
T ss_pred             --CceeECCCCCcEEEe-CCC--------CCCch----hheEEEE-ECCCCCEEEEc--CCceEEEcCCCCcEEEcCCcC
Confidence              689998654  3333 111        12111    1234565 68899999998  4779999998766543 3344


Q ss_pred             Ccc
Q 010579          240 TFH  242 (507)
Q Consensus       240 G~p  242 (507)
                      |++
T Consensus       625 Gl~  627 (795)
T 4a2l_A          625 GLQ  627 (795)
T ss_dssp             TCS
T ss_pred             CCc
Confidence            554

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=92.95  E-value=2.8  Score=40.68  Aligned_cols=132  Identities=15%  Similarity=0.119  Sum_probs=74.0

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      ....++++++| ++++-..++.|+.++...   ++. ..+.+.    .++.      ..-.....|+++++|+++++-..
T Consensus       188 ~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~---~~~~~~~~~~----~~h~------~~~~~i~~i~~~~~~~~l~~~~~  253 (397)
T 1sq9_A          188 FATSVDISERG-LIATGFNNGTVQISELST---LRPLYNFESQ----HSMI------NNSNSIRSVKFSPQGSLLAIAHD  253 (397)
T ss_dssp             CCCEEEECTTS-EEEEECTTSEEEEEETTT---TEEEEEEECC----C---------CCCCCEEEEEECSSTTEEEEEEE
T ss_pred             CceEEEECCCc-eEEEEeCCCcEEEEECCC---CceeEEEecc----cccc------ccCCccceEEECCCCCEEEEEec
Confidence            46789999999 888888889999999862   322 222220    0000      00124578999999997776666


Q ss_pred             C---CeEEEEcC-CC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCcee
Q 010579          163 N---MAIRKISD-TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS  234 (507)
Q Consensus       163 N---~rIrk~d~-~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~  234 (507)
                      +   +.|+.+|. .+  +.++.+..... ....   ...+.-.....+++ .+++.++++-..++.|+.+++....+.
T Consensus       254 d~~~g~i~i~d~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~  326 (397)
T 1sq9_A          254 SNSFGCITLYETEFGERIGSLSVPTHSS-QASL---GEFAHSSWVMSLSF-NDSGETLCSAGWDGKLRFWDVKTKERI  326 (397)
T ss_dssp             ETTEEEEEEEETTTCCEEEEECBC------------CCBSBSSCEEEEEE-CSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             CCCCceEEEEECCCCcccceeccCcccc-cccc---cccccCCcEEEEEE-CCCCCEEEEEeCCCeEEEEEcCCCcee
Confidence            6   78999994 33  44443210000 0000   00000112345554 455566666556777888877665543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=92.87  E-value=5.2  Score=38.72  Aligned_cols=138  Identities=17%  Similarity=0.112  Sum_probs=76.6

Q ss_pred             CeeEEEEcCCCcEEEEeCCC---CeEEEEeCCCCCCCc-cEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEE
Q 010579           84 EPFSVAVSPSGELLVLDSEN---SNIYKISTSLSPYSR-PKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIA  159 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n---~rI~ki~~~g~~~g~-i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVA  159 (507)
                      ....|+++++|.++++-...   +.|+.++...   +. +..+.+......-...   ..+.-.....++++++|+++++
T Consensus       235 ~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~  308 (397)
T 1sq9_A          235 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF---GERIGSLSVPTHSSQASLG---EFAHSSWVMSLSFNDSGETLCS  308 (397)
T ss_dssp             CEEEEEECSSTTEEEEEEEETTEEEEEEEETTT---CCEEEEECBC--------C---CBSBSSCEEEEEECSSSSEEEE
T ss_pred             ccceEEECCCCCEEEEEecCCCCceEEEEECCC---CcccceeccCccccccccc---ccccCCcEEEEEECCCCCEEEE
Confidence            56789999999988777766   8999999762   33 2233221000000000   0001234568999999998888


Q ss_pred             eCCCCeEEEEcCC-C--cEEEecCcccCCCCC-CCCCccCc-----cCCCCceEEEEcCCC----------eEEEEeCCC
Q 010579          160 DTMNMAIRKISDT-G--VTTIAGGKWSRGVGH-VDGPSEDA-----KFSNDFDVVYVGSSC----------SLLVIDRGN  220 (507)
Q Consensus       160 Ds~N~rIrk~d~~-G--VstIaGG~~g~~~G~-~dg~~~~a-----~f~~P~gIa~vd~~G----------~LyVaD~gn  220 (507)
                      -+.++.|+.++.. +  +.++......  .++ .|......     .-....++++. +++          .++++-...
T Consensus       309 ~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~v~~~~~~-~~g~~~~~~~~~~~~l~s~~~d  385 (397)
T 1sq9_A          309 AGWDGKLRFWDVKTKERITTLNMHCDD--IEIEEDILAVDEHGDSLAEPGVFDVKFL-KKGWRSGMGADLNESLCCVCLD  385 (397)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCGGG--CSSGGGCCCBCTTSCBCSSCCEEEEEEE-CTTTSBSTTCTTSCEEEEEETT
T ss_pred             EeCCCeEEEEEcCCCceeEEEecccCc--ccchhhhhccccccccccCCceeEEEec-cccccccccccccceEEEecCC
Confidence            7788899999953 3  4455411000  000 00000000     01234577754 554          577776677


Q ss_pred             CeEEEEECCC
Q 010579          221 QAIREIQLHD  230 (507)
Q Consensus       221 ~rIr~I~l~~  230 (507)
                      +.|+.+++.+
T Consensus       386 g~i~iw~~~~  395 (397)
T 1sq9_A          386 RSIRWFREAG  395 (397)
T ss_dssp             TEEEEEEEEC
T ss_pred             CcEEEEEcCC
Confidence            8898888654

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=92.82  E-value=1.7  Score=43.68  Aligned_cols=114  Identities=18%  Similarity=0.237  Sum_probs=75.4

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      .-..++++|+|.++++-+..+.|+.++...   +.. .++.|.                -.....|+++++|+++++=+.
T Consensus       110 ~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~---~~~~~~l~~h----------------~~~V~~v~~~~~~~~l~sgs~  170 (410)
T 1vyh_C          110 PVTRVIFHPVFSVMVSASEDATIKVWDYET---GDFERTLKGH----------------TDSVQDISFDHSGKLLASCSA  170 (410)
T ss_dssp             CEEEEEECSSSSEEEEEESSSCEEEEETTT---CCCCEEECCC----------------SSCEEEEEECTTSSEEEEEET
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCC---CcEEEEEecc----------------CCcEEEEEEcCCCCEEEEEeC
Confidence            466899999999999988889999999763   322 232221                123568999999998888777


Q ss_pred             CCeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCcee
Q 010579          163 NMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS  234 (507)
Q Consensus       163 N~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~  234 (507)
                      .+.|+.+|..+   +.++.+        +.         ..-..+++ .+++..+++-...+.|+.+++....|.
T Consensus       171 D~~i~iwd~~~~~~~~~~~~--------h~---------~~V~~v~~-~p~~~~l~s~s~D~~i~~wd~~~~~~~  227 (410)
T 1vyh_C          171 DMTIKLWDFQGFECIRTMHG--------HD---------HNVSSVSI-MPNGDHIVSASRDKTIKMWEVQTGYCV  227 (410)
T ss_dssp             TSCCCEEETTSSCEEECCCC--------CS---------SCEEEEEE-CSSSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             CCeEEEEeCCCCceeEEEcC--------CC---------CCEEEEEE-eCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            88889888554   222211        00         12234553 455666666666777888887766654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=92.66  E-value=1.4  Score=42.12  Aligned_cols=116  Identities=8%  Similarity=-0.009  Sum_probs=69.4

Q ss_pred             eeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCC
Q 010579           85 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM  164 (507)
Q Consensus        85 P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~  164 (507)
                      -..++++++|+++++-..++.|+.++........+..+.+.                -.....|+++++|+++++-..++
T Consensus        11 i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h----------------~~~v~~~~~~~~~~~l~~~~~dg   74 (372)
T 1k8k_C           11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEH----------------NGQVTGVDWAPDSNRIVTCGTDR   74 (372)
T ss_dssp             CCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECC----------------SSCEEEEEEETTTTEEEEEETTS
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCC----------------CCcccEEEEeCCCCEEEEEcCCC
Confidence            45889999999888877789999998762100022333222                12456899999999777766677


Q ss_pred             eEEEEcC-CC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCc
Q 010579          165 AIRKISD-TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD  232 (507)
Q Consensus       165 rIrk~d~-~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~  232 (507)
                      .|+.++. .+  ...+....               .-.....+++ ..++.++++-..++.|+.+++....
T Consensus        75 ~i~vwd~~~~~~~~~~~~~~---------------~~~~v~~~~~-~~~~~~l~~~~~d~~v~i~d~~~~~  129 (372)
T 1k8k_C           75 NAYVWTLKGRTWKPTLVILR---------------INRAARCVRW-APNEKKFAVGSGSRVISICYFEQEN  129 (372)
T ss_dssp             CEEEEEEETTEEEEEEECCC---------------CSSCEEEEEE-CTTSSEEEEEETTSSEEEEEEETTT
T ss_pred             eEEEEECCCCeeeeeEEeec---------------CCCceeEEEE-CCCCCEEEEEeCCCEEEEEEecCCC
Confidence            8888883 33  22221100               0112445664 4455555555556777776665543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=92.61  E-value=7.9  Score=37.53  Aligned_cols=113  Identities=10%  Similarity=0.026  Sum_probs=75.0

Q ss_pred             CeeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           84 EPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      .-..|++.+ +++++++-...+.|+.++..+   ..+..+.+..    +         .-.....+++.++|+++++-..
T Consensus       120 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~----~---------~~~~v~~~~~~~~~~~l~~~~~  183 (383)
T 3ei3_B          120 AITGMKFNQFNTNQLFVSSIRGATTLRDFSG---SVIQVFAKTD----S---------WDYWYCCVDVSVSRQMLATGDS  183 (383)
T ss_dssp             BEEEEEEETTEEEEEEEEETTTEEEEEETTS---CEEEEEECCC----C---------SSCCEEEEEEETTTTEEEEEET
T ss_pred             ceeEEEeCCCCCCEEEEEeCCCEEEEEECCC---CceEEEeccC----C---------CCCCeEEEEECCCCCEEEEECC
Confidence            567899999 677777777789999999873   3344443321    0         0124568999999998887777


Q ss_pred             CCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCe-EEEEeCCCCeEEEEECCC
Q 010579          163 NMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCS-LLVIDRGNQAIREIQLHD  230 (507)
Q Consensus       163 N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~-LyVaD~gn~rIr~I~l~~  230 (507)
                      ++.|+.++..+  +.++.+..                 ....+|++ .+++. ++++-...+.|+.+++..
T Consensus       184 d~~i~i~d~~~~~~~~~~~h~-----------------~~v~~~~~-~~~~~~~l~s~~~d~~i~iwd~~~  236 (383)
T 3ei3_B          184 TGRLLLLGLDGHEIFKEKLHK-----------------AKVTHAEF-NPRCDWLMATSSVDATVKLWDLRN  236 (383)
T ss_dssp             TSEEEEEETTSCEEEEEECSS-----------------SCEEEEEE-CSSCTTEEEEEETTSEEEEEEGGG
T ss_pred             CCCEEEEECCCCEEEEeccCC-----------------CcEEEEEE-CCCCCCEEEEEeCCCEEEEEeCCC
Confidence            88999999766  44443211                 12345664 44454 666666677888888765

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=92.56  E-value=2.6  Score=40.18  Aligned_cols=111  Identities=8%  Similarity=0.060  Sum_probs=73.4

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCc-cEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSR-PKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~-i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      .-.+|+++|+|.++++-...+.|+.++...   +. +..+.+..                ..-..+++.++|+++++=+.
T Consensus        15 ~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~---~~~~~~~~~~~----------------~~v~~~~~~~~~~~l~s~s~   75 (304)
T 2ynn_A           15 RVKGIDFHPTEPWVLTTLYSGRVELWNYET---QVEVRSIQVTE----------------TPVRAGKFIARKNWIIVGSD   75 (304)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTT---TEEEEEEECCS----------------SCEEEEEEEGGGTEEEEEET
T ss_pred             ceEEEEECCCCCEEEEEcCCCcEEEEECCC---CceeEEeeccC----------------CcEEEEEEeCCCCEEEEECC
Confidence            356899999999888888889999999862   32 22222211                12347888899998888777


Q ss_pred             CCeEEEEcC-CC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 010579          163 NMAIRKISD-TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD  231 (507)
Q Consensus       163 N~rIrk~d~-~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~  231 (507)
                      .+.|+.+|. .+  +.++.+-.                 ..-.+|++ .+++.++++-...+.|+..++...
T Consensus        76 d~~i~vwd~~~~~~~~~~~~h~-----------------~~v~~~~~-~~~~~~l~sgs~D~~v~lWd~~~~  129 (304)
T 2ynn_A           76 DFRIRVFNYNTGEKVVDFEAHP-----------------DYIRSIAV-HPTKPYVLSGSDDLTVKLWNWENN  129 (304)
T ss_dssp             TSEEEEEETTTCCEEEEEECCS-----------------SCEEEEEE-CSSSSEEEEEETTSCEEEEEGGGT
T ss_pred             CCEEEEEECCCCcEEEEEeCCC-----------------CcEEEEEE-cCCCCEEEEECCCCeEEEEECCCC
Confidence            889999994 33  34443211                 12245554 556666666666778888887654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=92.48  E-value=2.4  Score=40.16  Aligned_cols=115  Identities=10%  Similarity=0.093  Sum_probs=71.2

Q ss_pred             CeeEEEEcCC---CcEEEEeCCCCeEEEEeCCCCCCCcc--EEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEE
Q 010579           84 EPFSVAVSPS---GELLVLDSENSNIYKISTSLSPYSRP--KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYI  158 (507)
Q Consensus        84 ~P~gIaVd~d---G~LYVaDs~n~rI~ki~~~g~~~g~i--~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYV  158 (507)
                      .-..|+++++   |.++++-..++.|+.++....  +..  ..+.+.                -.....|+++++|++++
T Consensus        41 ~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~h----------------~~~v~~~~~~~~~~~l~  102 (368)
T 3mmy_A           41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDS--GQTIPKAQQMH----------------TGPVLDVCWSDDGSKVF  102 (368)
T ss_dssp             CEEEEEECCTTSSSEEEEEEETTSEEEEEEECTT--SCEEEEEEEEC----------------SSCEEEEEECTTSSEEE
T ss_pred             ceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCC--CceeEEEeccc----------------cCCEEEEEECcCCCEEE
Confidence            4568899998   688887777889999987621  111  222221                12456899999998777


Q ss_pred             EeCCCCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEE-cCCCeEEEEeCCCCeEEEEECCCCce
Q 010579          159 ADTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYV-GSSCSLLVIDRGNQAIREIQLHDDDC  233 (507)
Q Consensus       159 ADs~N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~v-d~~G~LyVaD~gn~rIr~I~l~~~~~  233 (507)
                      +=+.++.|+.++...  +..+.+..                 ....++++. ..++.++++-..++.|+.+++....+
T Consensus       103 s~~~dg~v~iwd~~~~~~~~~~~~~-----------------~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  163 (368)
T 3mmy_A          103 TASCDKTAKMWDLSSNQAIQIAQHD-----------------APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP  163 (368)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECS-----------------SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC
T ss_pred             EEcCCCcEEEEEcCCCCceeecccc-----------------CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE
Confidence            766788899999544  22222110                 112344431 45666666666667777777765543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=92.07  E-value=6.7  Score=35.47  Aligned_cols=111  Identities=14%  Similarity=0.198  Sum_probs=60.0

Q ss_pred             CeeEEEEcCCCcEEEEeC----CCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEE
Q 010579           84 EPFSVAVSPSGELLVLDS----ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYI  158 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs----~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYV  158 (507)
                      ....++++++|..+++-.    ...+|+.++..+   +....+...                 .....++++++|+ |++
T Consensus        86 ~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~-----------------~~~~~~~~spdg~~l~~  145 (297)
T 2ojh_A           86 CNNDHGISPDGALYAISDKVEFGKSAIYLLPSTG---GTPRLMTKN-----------------LPSYWHGWSPDGKSFTY  145 (297)
T ss_dssp             BCSCCEECTTSSEEEEEECTTTSSCEEEEEETTC---CCCEECCSS-----------------SSEEEEEECTTSSEEEE
T ss_pred             cccceEECCCCCEEEEEEeCCCCcceEEEEECCC---CceEEeecC-----------------CCccceEECCCCCEEEE
Confidence            456789999997544433    357888888753   223222211                 1256789999998 554


Q ss_pred             EeCCCC--eEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCe-EEEEe--CCCCeEEEEECCCC
Q 010579          159 ADTMNM--AIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCS-LLVID--RGNQAIREIQLHDD  231 (507)
Q Consensus       159 ADs~N~--rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~-LyVaD--~gn~rIr~I~l~~~  231 (507)
                      +...+.  +|..++..+  +..+...                 -.....+++ .+++. |+++.  .+..+|+.+++.+.
T Consensus       146 ~~~~~~~~~l~~~~~~~~~~~~~~~~-----------------~~~~~~~~~-s~dg~~l~~~~~~~~~~~i~~~~~~~~  207 (297)
T 2ojh_A          146 CGIRDQVFDIYSMDIDSGVETRLTHG-----------------EGRNDGPDY-SPDGRWIYFNSSRTGQMQIWRVRVDGS  207 (297)
T ss_dssp             EEEETTEEEEEEEETTTCCEEECCCS-----------------SSCEEEEEE-CTTSSEEEEEECTTSSCEEEEEETTSS
T ss_pred             EECCCCceEEEEEECCCCcceEcccC-----------------CCccccceE-CCCCCEEEEEecCCCCccEEEECCCCC
Confidence            544444  555665443  3322111                 012345564 44444 55553  34556777765554


Q ss_pred             c
Q 010579          232 D  232 (507)
Q Consensus       232 ~  232 (507)
                      .
T Consensus       208 ~  208 (297)
T 2ojh_A          208 S  208 (297)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=92.01  E-value=0.97  Score=44.93  Aligned_cols=71  Identities=11%  Similarity=0.076  Sum_probs=51.2

Q ss_pred             CcceEEEcCCCCEEEEeCCCCeEEEEcCC-C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCC
Q 010579          144 HPKGLAVDDRGNIYIADTMNMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN  220 (507)
Q Consensus       144 ~P~GIaVd~dGnIYVADs~N~rIrk~d~~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn  220 (507)
                      .-..|+++|+|.++++=+..+.|+.+|.. +  +.++..+.                -..-.+|++ .++|.++++-+..
T Consensus       271 ~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH----------------~~~V~~v~f-Spdg~~laS~S~D  333 (365)
T 4h5i_A          271 GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH----------------SFAITEVTI-SPDSTYVASVSAA  333 (365)
T ss_dssp             CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS----------------SSCEEEEEE-CTTSCEEEEEETT
T ss_pred             CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc----------------cCCEEEEEE-CCCCCEEEEEeCC
Confidence            34689999999988776677889999954 4  33442211                113457775 7788999988889


Q ss_pred             CeEEEEECCCC
Q 010579          221 QAIREIQLHDD  231 (507)
Q Consensus       221 ~rIr~I~l~~~  231 (507)
                      +.||.+++..+
T Consensus       334 ~tvrvw~ip~~  344 (365)
T 4h5i_A          334 NTIHIIKLPLN  344 (365)
T ss_dssp             SEEEEEECCTT
T ss_pred             CeEEEEEcCCC
Confidence            99999998654

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=92.00  E-value=0.4  Score=52.62  Aligned_cols=61  Identities=13%  Similarity=0.253  Sum_probs=44.9

Q ss_pred             CCCeeEEEEcCCCcEEEEeCC------------CCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEE
Q 010579           82 GMEPFSVAVSPSGELLVLDSE------------NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLA  149 (507)
Q Consensus        82 ~~~P~gIaVd~dG~LYVaDs~------------n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIa  149 (507)
                      +.+|-.|+||+.|+|||+.-.            |+.++..++.   .+.+..|+-.+.+              .-..|++
T Consensus       475 f~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~---~g~~~rf~~~P~g--------------aE~TG~~  537 (592)
T 3zwu_A          475 FNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPA---TGEIRRFMVGPIG--------------CEVTGIS  537 (592)
T ss_dssp             CCCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTT---TCCEEEEEECCTT--------------CEEEEEE
T ss_pred             ccCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCC---CCeEEEEEeCCCC--------------ccCcCee
Confidence            579999999999999998643            4667777765   4667776654422              2456999


Q ss_pred             EcCCCC-EEEE
Q 010579          150 VDDRGN-IYIA  159 (507)
Q Consensus       150 Vd~dGn-IYVA  159 (507)
                      +++||. |||+
T Consensus       538 fspDg~tlfvn  548 (592)
T 3zwu_A          538 FSPDQKTLFVG  548 (592)
T ss_dssp             ECTTSSEEEEE
T ss_pred             ECCCCCEEEEE
Confidence            999987 7775

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=91.91  E-value=2.1  Score=42.10  Aligned_cols=109  Identities=13%  Similarity=0.132  Sum_probs=67.4

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  163 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N  163 (507)
                      .-..|+++|+|.++++-+..+.|+.++...   +.........             ........++++++|.+.++-+..
T Consensus       242 ~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~---~~~~~~~~~~-------------~~~~~~~~~~~s~~g~~l~~g~~d  305 (354)
T 2pbi_B          242 DVNSVRYYPSGDAFASGSDDATCRLYDLRA---DREVAIYSKE-------------SIIFGASSVDFSLSGRLLFAGYND  305 (354)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTT---TEEEEEECCT-------------TCCSCEEEEEECTTSSEEEEEETT
T ss_pred             CeEEEEEeCCCCEEEEEeCCCeEEEEECCC---CcEEEEEcCC-------------CcccceeEEEEeCCCCEEEEEECC
Confidence            355788888888777777778888888652   2221111110             011235688999999988887778


Q ss_pred             CeEEEEcC-CC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEE
Q 010579          164 MAIRKISD-TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI  226 (507)
Q Consensus       164 ~rIrk~d~-~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I  226 (507)
                      +.|+.+|. .+  +.++.+-.                 .....|++ .+++.++++-...+.|+..
T Consensus       306 ~~i~vwd~~~~~~~~~l~~h~-----------------~~v~~l~~-spdg~~l~sgs~D~~v~vW  353 (354)
T 2pbi_B          306 YTINVWDVLKGSRVSILFGHE-----------------NRVSTLRV-SPDGTAFCSGSWDHTLRVW  353 (354)
T ss_dssp             SCEEEEETTTCSEEEEECCCS-----------------SCEEEEEE-CTTSSCEEEEETTSEEEEE
T ss_pred             CcEEEEECCCCceEEEEECCC-----------------CcEEEEEE-CCCCCEEEEEcCCCCEEec
Confidence            88999984 44  44443211                 12346664 5667766666666777654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=91.91  E-value=3.5  Score=40.41  Aligned_cols=72  Identities=24%  Similarity=0.285  Sum_probs=50.9

Q ss_pred             CCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           83 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      ..-..|+++++|.++++-+..+.|+.++....  ..+..+.+.                -.....|+++++|+++++-+.
T Consensus       140 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~--~~~~~~~~h----------------~~~v~~~~~~~~~~~l~s~~~  201 (420)
T 3vl1_A          140 SEITKLKFFPSGEALISSSQDMQLKIWSVKDG--SNPRTLIGH----------------RATVTDIAIIDRGRNVLSASL  201 (420)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CCCEEEECC----------------SSCEEEEEEETTTTEEEEEET
T ss_pred             CccEEEEECCCCCEEEEEeCCCeEEEEeCCCC--cCceEEcCC----------------CCcEEEEEEcCCCCEEEEEcC
Confidence            35678999999998888788899999997631  122333221                123568999999987777667


Q ss_pred             CCeEEEEcCC
Q 010579          163 NMAIRKISDT  172 (507)
Q Consensus       163 N~rIrk~d~~  172 (507)
                      .+.|+.+|..
T Consensus       202 d~~v~iwd~~  211 (420)
T 3vl1_A          202 DGTIRLWECG  211 (420)
T ss_dssp             TSCEEEEETT
T ss_pred             CCcEEEeECC
Confidence            7788888843

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=91.71  E-value=2.9  Score=40.43  Aligned_cols=123  Identities=14%  Similarity=0.080  Sum_probs=68.4

Q ss_pred             CeeEEEEcCCCc-EEEEeCCCCeEEEEeC----CCCCCCc-------cEEEecCCCCccccCCCCcccccCCCcceEEEc
Q 010579           84 EPFSVAVSPSGE-LLVLDSENSNIYKIST----SLSPYSR-------PKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVD  151 (507)
Q Consensus        84 ~P~gIaVd~dG~-LYVaDs~n~rI~ki~~----~g~~~g~-------i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd  151 (507)
                      .-..++++|+|. ++++-..++.|+.++.    ..   +.       ...+.....+. ..     ....-.....|+++
T Consensus        47 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~v~~~~~s  117 (425)
T 1r5m_A           47 NIVSSTWNPLDESILAYGEKNSVARLARIVETDQE---GKKYWKLTIIAELRHPFALS-AS-----SGKTTNQVTCLAWS  117 (425)
T ss_dssp             CCSEEEECSSCTTEEEEEETBTEEEEEEEEEC---------CEEEEEEEEEECCCCCC------------CBCEEEEEEC
T ss_pred             ceEEEEECCCCCcEEEEecCCceEEEEEEecccCC---cccccccccccccccccccc-cc-----ccCCCCceEEEEEc
Confidence            356899999998 8777777789999887    52   33       11222111000 00     00011246789999


Q ss_pred             CCCCEEEEeCCCCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECC
Q 010579          152 DRGNIYIADTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH  229 (507)
Q Consensus       152 ~dGnIYVADs~N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~  229 (507)
                      ++|+++++=..++.|+.++.++  +..+.+..                 ....++++ .+++.++++-...+.|+.+++.
T Consensus       118 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~-----------------~~v~~~~~-~~~~~~l~~~~~d~~i~iwd~~  179 (425)
T 1r5m_A          118 HDGNSIVTGVENGELRLWNKTGALLNVLNFHR-----------------APIVSVKW-NKDGTHIISMDVENVTILWNVI  179 (425)
T ss_dssp             TTSSEEEEEETTSCEEEEETTSCEEEEECCCC-----------------SCEEEEEE-CTTSSEEEEEETTCCEEEEETT
T ss_pred             CCCCEEEEEeCCCeEEEEeCCCCeeeeccCCC-----------------ccEEEEEE-CCCCCEEEEEecCCeEEEEECC
Confidence            9999777766678899998666  34442210                 12334553 3444444444445667777765


Q ss_pred             CCce
Q 010579          230 DDDC  233 (507)
Q Consensus       230 ~~~~  233 (507)
                      ...+
T Consensus       180 ~~~~  183 (425)
T 1r5m_A          180 SGTV  183 (425)
T ss_dssp             TTEE
T ss_pred             CCcE
Confidence            5443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=91.65  E-value=5.2  Score=40.24  Aligned_cols=118  Identities=14%  Similarity=0.103  Sum_probs=73.0

Q ss_pred             eeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC-CCCEEEEeCC
Q 010579           85 PFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTM  162 (507)
Q Consensus        85 P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~-dGnIYVADs~  162 (507)
                      =+.|+++| +++++++-+..+.|+.++...   +....+.-    ..|+         -..-..|++.| +|+++++=+.
T Consensus       122 V~~l~~~P~~~~~lasGs~dg~i~lWd~~~---~~~~~~~~----~~gH---------~~~V~~l~f~p~~~~~l~s~s~  185 (435)
T 4e54_B          122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGI---KDKPTFIK----GIGA---------GGSITGLKFNPLNTNQFYASSM  185 (435)
T ss_dssp             EEEEEECSSCTTCEEEEETTSCEEEECSSC---CSCCEEEC----CCSS---------SCCCCEEEECSSCTTEEEEECS
T ss_pred             EEEEEEeCCCCCEEEEEeCCCEEEEEECCC---CCceeEEE----ccCC---------CCCEEEEEEeCCCCCEEEEEeC
Confidence            46799998 567877777789999998763   22222111    0111         11345899997 6888888777


Q ss_pred             CCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCce
Q 010579          163 NMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  233 (507)
Q Consensus       163 N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~  233 (507)
                      .+.|+..|-.+  +.++......              -..-..+++ ..++.++++-...+.|+.+++.+..+
T Consensus       186 D~~v~iwd~~~~~~~~~~~~~~~--------------~~~~~~~~~-~~~~~~l~~g~~dg~i~~wd~~~~~~  243 (435)
T 4e54_B          186 EGTTRLQDFKGNILRVFASSDTI--------------NIWFCSLDV-SASSRMVVTGDNVGNVILLNMDGKEL  243 (435)
T ss_dssp             SSCEEEEETTSCEEEEEECCSSC--------------SCCCCCEEE-ETTTTEEEEECSSSBEEEEESSSCBC
T ss_pred             CCEEEEeeccCCceeEEeccCCC--------------CccEEEEEE-CCCCCEEEEEeCCCcEeeeccCccee
Confidence            88899999655  3444322110              011234554 45666777766778888888876443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=91.52  E-value=1.5  Score=44.33  Aligned_cols=115  Identities=10%  Similarity=-0.008  Sum_probs=73.5

Q ss_pred             eeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579           85 PFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  163 (507)
Q Consensus        85 P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N  163 (507)
                      =.+|++.| +|+++++-+..+.|+.++..+   +....+.... .            .-.....++++++|+++++=...
T Consensus       167 V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~---~~~~~~~~~~-~------------~~~~~~~~~~~~~~~~l~~g~~d  230 (435)
T 4e54_B          167 ITGLKFNPLNTNQFYASSMEGTTRLQDFKG---NILRVFASSD-T------------INIWFCSLDVSASSRMVVTGDNV  230 (435)
T ss_dssp             CCEEEECSSCTTEEEEECSSSCEEEEETTS---CEEEEEECCS-S------------CSCCCCCEEEETTTTEEEEECSS
T ss_pred             EEEEEEeCCCCCEEEEEeCCCEEEEeeccC---CceeEEeccC-C------------CCccEEEEEECCCCCEEEEEeCC
Confidence            45899997 788888888889999999862   3344443321 0            01123468899999988887778


Q ss_pred             CeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCc
Q 010579          164 MAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD  232 (507)
Q Consensus       164 ~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~  232 (507)
                      +.|+.+|..+  +.++.+        +         -..-.+|++.+....++++-...+.|+.+++....
T Consensus       231 g~i~~wd~~~~~~~~~~~--------h---------~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~  284 (435)
T 4e54_B          231 GNVILLNMDGKELWNLRM--------H---------KKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR  284 (435)
T ss_dssp             SBEEEEESSSCBCCCSBC--------C---------SSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCC
T ss_pred             CcEeeeccCcceeEEEec--------c---------cceEEeeeecCCCceEEEEecCcceeeEEeccccc
Confidence            8899998665  222211        0         01224566544444566666667888888876543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=91.40  E-value=11  Score=36.73  Aligned_cols=114  Identities=10%  Similarity=0.087  Sum_probs=71.9

Q ss_pred             eeEEEEcC--CCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeC
Q 010579           85 PFSVAVSP--SGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT  161 (507)
Q Consensus        85 P~gIaVd~--dG~LYVaDs~n~rI~ki~~~g~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs  161 (507)
                      -..+++.+  +|+++++-+..+.|+.++...   +.. ..+.+.                -...+.|+++++|+++++=+
T Consensus       199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~---~~~~~~~~~h----------------~~~v~~v~~~p~~~~l~s~s  259 (354)
T 2pbi_B          199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRS---GQCVQAFETH----------------ESDVNSVRYYPSGDAFASGS  259 (354)
T ss_dssp             EEEEEECCCSSCCEEEEEETTSCEEEEETTT---CCEEEEECCC----------------SSCEEEEEECTTSSEEEEEE
T ss_pred             eEEEEEEeCCCCCEEEEEeCCCeEEEEECCC---CcEEEEecCC----------------CCCeEEEEEeCCCCEEEEEe
Confidence            44666765  577888878889999999762   332 222211                12356899999999888877


Q ss_pred             CCCeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCce
Q 010579          162 MNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  233 (507)
Q Consensus       162 ~N~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~  233 (507)
                      ..+.|+.+|...   +..+....               .......+++ ..++.++++-...+.|+.+++....+
T Consensus       260 ~D~~v~lwd~~~~~~~~~~~~~~---------------~~~~~~~~~~-s~~g~~l~~g~~d~~i~vwd~~~~~~  318 (354)
T 2pbi_B          260 DDATCRLYDLRADREVAIYSKES---------------IIFGASSVDF-SLSGRLLFAGYNDYTINVWDVLKGSR  318 (354)
T ss_dssp             TTSCEEEEETTTTEEEEEECCTT---------------CCSCEEEEEE-CTTSSEEEEEETTSCEEEEETTTCSE
T ss_pred             CCCeEEEEECCCCcEEEEEcCCC---------------cccceeEEEE-eCCCCEEEEEECCCcEEEEECCCCce
Confidence            788899999543   23321110               0112345553 56677776666777888888765544

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=91.32  E-value=10  Score=36.04  Aligned_cols=135  Identities=10%  Similarity=-0.004  Sum_probs=78.0

Q ss_pred             CCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCc-cEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeC
Q 010579           83 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSR-PKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT  161 (507)
Q Consensus        83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~-i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs  161 (507)
                      .....++++++|.++++-..++.|+.++........ ...+..      +         .-.....|+++++|+++++-+
T Consensus        97 ~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~------~---------~~~~i~~~~~~~~~~~l~~~~  161 (372)
T 1k8k_C           97 RAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKK------P---------IRSTVLSLDWHPNSVLLAAGS  161 (372)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECT------T---------CCSCEEEEEECTTSSEEEEEE
T ss_pred             CceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeec------c---------cCCCeeEEEEcCCCCEEEEEc
Confidence            357789999998877776777888887765211000 111110      0         123467899999999887777


Q ss_pred             CCCeEEEEcCC-------------------C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCC
Q 010579          162 MNMAIRKISDT-------------------G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN  220 (507)
Q Consensus       162 ~N~rIrk~d~~-------------------G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn  220 (507)
                      ..+.|+.++..                   +  +.++.+                 .-....++++ .+++.++++-...
T Consensus       162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~v~~~~~-~~~~~~l~~~~~d  223 (372)
T 1k8k_C          162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS-----------------SCGWVHGVCF-SANGSRVAWVSHD  223 (372)
T ss_dssp             TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC-----------------CSSCEEEEEE-CSSSSEEEEEETT
T ss_pred             CCCCEEEEEcccccccccccccccccccchhhheEecCC-----------------CCCeEEEEEE-CCCCCEEEEEeCC
Confidence            77889988832                   1  111110                 0112345664 5566666665667


Q ss_pred             CeEEEEECCCCceeeC--CCCCccceEEEEec
Q 010579          221 QAIREIQLHDDDCSDN--YDDTFHLGIFVLVA  250 (507)
Q Consensus       221 ~rIr~I~l~~~~~~~~--~~~G~p~gIa~~~~  250 (507)
                      +.|+.+++....+...  ...+....+++...
T Consensus       224 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~  255 (372)
T 1k8k_C          224 STVCLADADKKMAVATLASETLPLLAVTFITE  255 (372)
T ss_dssp             TEEEEEEGGGTTEEEEEECSSCCEEEEEEEET
T ss_pred             CEEEEEECCCCceeEEEccCCCCeEEEEEecC
Confidence            8888888876555432  22223345555543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=91.26  E-value=2.8  Score=42.28  Aligned_cols=114  Identities=11%  Similarity=0.075  Sum_probs=75.9

Q ss_pred             CeeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCC-CccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEe
Q 010579           84 EPFSVAVSP-SGELLVLDSENSNIYKISTSLSPY-SRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIAD  160 (507)
Q Consensus        84 ~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~-g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVAD  160 (507)
                      ....|++++ ++.++++....+.|+.++...... ..+..+.+.                -..++.|+++++|. ++++-
T Consensus       233 ~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~----------------~~~v~~i~~~p~~~~~l~tg  296 (430)
T 2xyi_A          233 VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH----------------TAEVNCLSFNPYSEFILATG  296 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC----------------SSCEEEEEECSSCTTEEEEE
T ss_pred             CEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC----------------CCCeEEEEeCCCCCCEEEEE
Confidence            467899998 678999988899999999863210 111222111                13467899999886 78777


Q ss_pred             CCCCeEEEEcCC--C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCC
Q 010579          161 TMNMAIRKISDT--G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  230 (507)
Q Consensus       161 s~N~rIrk~d~~--G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~  230 (507)
                      ...+.|++++..  +  +.++.+..                 .....|++.+....++++-...++|+.+++..
T Consensus       297 ~~dg~v~vwd~~~~~~~~~~~~~h~-----------------~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          297 SADKTVALWDLRNLKLKLHSFESHK-----------------DEIFQVQWSPHNETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             ETTSEEEEEETTCTTSCSEEEECCS-----------------SCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred             eCCCeEEEEeCCCCCCCeEEeecCC-----------------CCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence            778889999943  2  45553211                 12346665444446788877888899998865

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=91.22  E-value=2.6  Score=40.64  Aligned_cols=115  Identities=16%  Similarity=0.154  Sum_probs=68.7

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccE-EEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPK-LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~-~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      .-..++++|+|.++++-...+.|+.++...   ++.. .+.+.                 .....++++++|.++++-. 
T Consensus       198 ~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~-----------------~~v~~~~~sp~~~~la~~~-  256 (319)
T 3frx_A          198 NINTLTASPDGTLIASAGKDGEIMLWNLAA---KKAMYTLSAQ-----------------DEVFSLAFSPNRYWLAAAT-  256 (319)
T ss_dssp             CEEEEEECTTSSEEEEEETTCEEEEEETTT---TEEEEEEECC-----------------SCEEEEEECSSSSEEEEEE-
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCC---CcEEEEecCC-----------------CcEEEEEEcCCCCEEEEEc-
Confidence            456788999999888877888999998762   3222 22111                 2356899999998655543 


Q ss_pred             CCeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECC
Q 010579          163 NMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH  229 (507)
Q Consensus       163 N~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~  229 (507)
                      ...|++++-+.   +..+.....        +. ..+.-.....+++ .++|..+++-...+.|+..++.
T Consensus       257 ~~~i~v~~~~~~~~~~~~~~~~~--------~~-~~~~~~~v~~~~~-spdg~~l~sg~~Dg~i~vWd~~  316 (319)
T 3frx_A          257 ATGIKVFSLDPQYLVDDLRPEFA--------GY-SKAAEPHAVSLAW-SADGQTLFAGYTDNVIRVWQVM  316 (319)
T ss_dssp             TTEEEEEEETTEEEEEEECCCCT--------TC-CGGGCCCEEEEEE-CTTSSEEEEEETTSCEEEEEEE
T ss_pred             CCCcEEEEeCcCeeeeccCcccc--------cc-ccCcCcceeEEEE-CCCCCEEEEeecCceEEEEEEe
Confidence            34467666443   233321110        00 0001112346775 6778777777778888888754

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=91.22  E-value=8  Score=37.06  Aligned_cols=75  Identities=11%  Similarity=0.194  Sum_probs=54.5

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      .-..+++.++|.++++-+..+.|+.++...   ++. ..+.|..                .....|+++++|.++++=+.
T Consensus        67 ~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~---~~~~~~~~~h~----------------~~v~~~~~~~~~~~l~s~s~  127 (319)
T 3frx_A           67 IVQDCTLTADGAYALSASWDKTLRLWDVAT---GETYQRFVGHK----------------SDVMSVDIDKKASMIISGSR  127 (319)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTT---TEEEEEEECCS----------------SCEEEEEECTTSCEEEEEET
T ss_pred             cEEEEEECCCCCEEEEEeCCCEEEEEECCC---CCeeEEEccCC----------------CcEEEEEEcCCCCEEEEEeC
Confidence            345789999999888888889999999862   332 2333221                23467899999998888777


Q ss_pred             CCeEEEEcCCC--cEEE
Q 010579          163 NMAIRKISDTG--VTTI  177 (507)
Q Consensus       163 N~rIrk~d~~G--VstI  177 (507)
                      .+.|+.++..+  +.++
T Consensus       128 D~~i~vwd~~~~~~~~~  144 (319)
T 3frx_A          128 DKTIKVWTIKGQCLATL  144 (319)
T ss_dssp             TSCEEEEETTSCEEEEE
T ss_pred             CCeEEEEECCCCeEEEE
Confidence            88899998665  4444

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=91.10  E-value=2.8  Score=42.25  Aligned_cols=121  Identities=12%  Similarity=0.053  Sum_probs=74.6

Q ss_pred             CeeEEEEcCC-CcEEEEeCCCCeEEEEeCCCCC--------CCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCC
Q 010579           84 EPFSVAVSPS-GELLVLDSENSNIYKISTSLSP--------YSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRG  154 (507)
Q Consensus        84 ~P~gIaVd~d-G~LYVaDs~n~rI~ki~~~g~~--------~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dG  154 (507)
                      .+..|++.++ +.++++-..++.|+.++.....        ......+.+.                -....+|++++++
T Consensus       130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h----------------~~~v~~l~~~~~~  193 (430)
T 2xyi_A          130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGH----------------QKEGYGLSWNPNL  193 (430)
T ss_dssp             CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECC----------------SSCCCCEEECTTS
T ss_pred             cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCC----------------CCCeEEEEeCCCC
Confidence            5789999996 6788887888899999875210        0111122111                1245689999988


Q ss_pred             C-EEEEeCCCCeEEEEcCCC----cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECC
Q 010579          155 N-IYIADTMNMAIRKISDTG----VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH  229 (507)
Q Consensus       155 n-IYVADs~N~rIrk~d~~G----VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~  229 (507)
                      . ++++-...+.|+.++...    ...+.-...           ....-....+|++.+.++.++++....+.|+.+++.
T Consensus       194 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-----------~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~  262 (430)
T 2xyi_A          194 NGYLLSASDDHTICLWDINATPKEHRVIDAKNI-----------FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR  262 (430)
T ss_dssp             TTEEEEECTTSCEEEEETTSCCBGGGEEECSEE-----------ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred             CCeEEEEeCCCeEEEEeCCCCCCCCceecccee-----------ecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECC
Confidence            7 777777788888888432    011100000           000111345677644477888888888889999887


Q ss_pred             CC
Q 010579          230 DD  231 (507)
Q Consensus       230 ~~  231 (507)
                      ..
T Consensus       263 ~~  264 (430)
T 2xyi_A          263 NN  264 (430)
T ss_dssp             CS
T ss_pred             CC
Confidence            64

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=91.08  E-value=3.3  Score=40.08  Aligned_cols=110  Identities=9%  Similarity=-0.016  Sum_probs=69.8

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCc-cEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSR-PKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~-i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      ....++++++|.++++-...+.|+.++...   +. +..+.+.                -.....++++++| ++++-+.
T Consensus       249 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~----------------~~~i~~~~~~~~~-~l~~~~~  308 (425)
T 1r5m_A          249 PISVLEFNDTNKLLLSASDDGTLRIWHGGN---GNSQNCFYGH----------------SQSIVSASWVGDD-KVISCSM  308 (425)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEECSSS---BSCSEEECCC----------------SSCEEEEEEETTT-EEEEEET
T ss_pred             ceEEEEECCCCCEEEEEcCCCEEEEEECCC---CccceEecCC----------------CccEEEEEECCCC-EEEEEeC
Confidence            456788888888777777778888888652   22 2222111                1245689999998 7777777


Q ss_pred             CCeEEEEcCC-C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 010579          163 NMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD  231 (507)
Q Consensus       163 N~rIrk~d~~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~  231 (507)
                      .+.|+.++.. +  +.++.+..                 .....+++ .+++.++++-..++.|+.+++...
T Consensus       309 d~~i~i~d~~~~~~~~~~~~~~-----------------~~i~~~~~-s~~~~~l~~~~~dg~i~i~~~~~~  362 (425)
T 1r5m_A          309 DGSVRLWSLKQNTLLALSIVDG-----------------VPIFAGRI-SQDGQKYAVAFMDGQVNVYDLKKL  362 (425)
T ss_dssp             TSEEEEEETTTTEEEEEEECTT-----------------CCEEEEEE-CTTSSEEEEEETTSCEEEEECHHH
T ss_pred             CCcEEEEECCCCcEeEecccCC-----------------ccEEEEEE-cCCCCEEEEEECCCeEEEEECCCC
Confidence            8899999953 3  33332210                 12345554 556666666666788888887653

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=90.92  E-value=1.8  Score=41.07  Aligned_cols=111  Identities=12%  Similarity=0.032  Sum_probs=70.5

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCc----cEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEE
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSR----PKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYI  158 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~----i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYV  158 (507)
                      .-..++++++|.++++-...+.|+.++...   +.    ...+.+.                -.....++++++|+ +++
T Consensus        13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~---~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~~l~   73 (342)
T 1yfq_A           13 YISDIKIIPSKSLLLITSWDGSLTVYKFDI---QAKNVDLLQSLRY----------------KHPLLCCNFIDNTDLQIY   73 (342)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEEEET---TTTEEEEEEEEEC----------------SSCEEEEEEEESSSEEEE
T ss_pred             cEEEEEEcCCCCEEEEEcCCCeEEEEEeCC---CCccccceeeeec----------------CCceEEEEECCCCCcEEE
Confidence            456889999998777777778999988752   22    2222221                12456899999999 666


Q ss_pred             EeCCCCeEEEEcC-CC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCC
Q 010579          159 ADTMNMAIRKISD-TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  230 (507)
Q Consensus       159 ADs~N~rIrk~d~-~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~  230 (507)
                      +=..++.|+.++. .+  ..++.+..               .-....++++.+  +.++++-...+.|+.+++..
T Consensus        74 ~~~~dg~i~~wd~~~~~~~~~~~~~~---------------~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~  131 (342)
T 1yfq_A           74 VGTVQGEILKVDLIGSPSFQALTNNE---------------ANLGICRICKYG--DDKLIAASWDGLIEVIDPRN  131 (342)
T ss_dssp             EEETTSCEEEECSSSSSSEEECBSCC---------------CCSCEEEEEEET--TTEEEEEETTSEEEEECHHH
T ss_pred             EEcCCCeEEEEEeccCCceEeccccC---------------CCCceEEEEeCC--CCEEEEEcCCCeEEEEcccc
Confidence            6566778999986 54  33332100               001234666554  56666666678898888765

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=90.58  E-value=5.6  Score=45.63  Aligned_cols=69  Identities=4%  Similarity=0.036  Sum_probs=50.8

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      .-..++++++|.++++-...+.|+.++...   +.. ..+-+.                -.....++++++|++.++=+.
T Consensus       617 ~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~---~~~~~~~~~h----------------~~~v~~~~~s~~~~~l~s~~~  677 (1249)
T 3sfz_A          617 AVYHACFSQDGQRIASCGADKTLQVFKAET---GEKLLDIKAH----------------EDEVLCCAFSSDDSYIATCSA  677 (1249)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTT---CCEEEEECCC----------------SSCEEEEEECTTSSEEEEEET
T ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEECCC---CCEEEEeccC----------------CCCEEEEEEecCCCEEEEEeC
Confidence            456889999999888877888999999863   332 222211                124568999999998777777


Q ss_pred             CCeEEEEcC
Q 010579          163 NMAIRKISD  171 (507)
Q Consensus       163 N~rIrk~d~  171 (507)
                      ++.|+++|.
T Consensus       678 d~~v~vwd~  686 (1249)
T 3sfz_A          678 DKKVKIWDS  686 (1249)
T ss_dssp             TSEEEEEET
T ss_pred             CCeEEEEEC
Confidence            888999994

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=90.51  E-value=3.4  Score=40.29  Aligned_cols=116  Identities=8%  Similarity=0.049  Sum_probs=73.7

Q ss_pred             CeeEEEEcCCC-cEEEEeCCCC---eEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC-CCCEEE
Q 010579           84 EPFSVAVSPSG-ELLVLDSENS---NIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYI  158 (507)
Q Consensus        84 ~P~gIaVd~dG-~LYVaDs~n~---rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~-dGnIYV  158 (507)
                      ....++++++| .++++-...+   .|+.++..... .....+.      .+         .-.....|++++ +|++++
T Consensus       216 ~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~-~~~~~~~------~~---------~~~~v~~~~~s~~~~~~l~  279 (416)
T 2pm9_A          216 QLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN-TPLQTLN------QG---------HQKGILSLDWCHQDEHLLL  279 (416)
T ss_dssp             CEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-SCSBCCC------SC---------CSSCEEEEEECSSCSSCEE
T ss_pred             ceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-CCcEEee------cC---------ccCceeEEEeCCCCCCeEE
Confidence            46788999986 5666666666   88888875210 0011110      01         113467899998 888888


Q ss_pred             EeCCCCeEEEEcCC-C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCC-eEEEEeCCCCeEEEEECCCCce
Q 010579          159 ADTMNMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDDDC  233 (507)
Q Consensus       159 ADs~N~rIrk~d~~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G-~LyVaD~gn~rIr~I~l~~~~~  233 (507)
                      +-..++.|+.++.. +  +.++.+..                 ....++++ .+++ .++++-...+.|+.+++.....
T Consensus       280 s~~~dg~v~~wd~~~~~~~~~~~~~~-----------------~~v~~~~~-s~~~~~~l~s~~~d~~i~iw~~~~~~~  340 (416)
T 2pm9_A          280 SSGRDNTVLLWNPESAEQLSQFPARG-----------------NWCFKTKF-APEAPDLFACASFDNKIEVQTLQNLTN  340 (416)
T ss_dssp             EEESSSEEEEECSSSCCEEEEEECSS-----------------SCCCCEEE-CTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred             EEeCCCCEEEeeCCCCccceeecCCC-----------------CceEEEEE-CCCCCCEEEEEecCCcEEEEEccCCCC
Confidence            77778899999943 3  44443211                 12346675 4555 7888888889999999876543

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=90.46  E-value=14  Score=36.25  Aligned_cols=80  Identities=20%  Similarity=0.234  Sum_probs=48.8

Q ss_pred             CeeEEEEcCCC-cEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCC-CCEEEEeC
Q 010579           84 EPFSVAVSPSG-ELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDR-GNIYIADT  161 (507)
Q Consensus        84 ~P~gIaVd~dG-~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~d-GnIYVADs  161 (507)
                      .-..+++.++| .++++-+..+.|+.++...   ++........    .         .-..+..+++.++ ++++++=+
T Consensus       171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~---~~~~~~~~~~----~---------~~~~~~~~~~~p~~~~~l~sg~  234 (344)
T 4gqb_B          171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRC---PKPASQIGCS----A---------PGYLPTSLAWHPQQSEVFVFGD  234 (344)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEEETTS---SSCEEECC-----------------CCCEEEEEECSSCTTEEEEEE
T ss_pred             ceEEEEecCCCCCceeeeccccccccccccc---cceeeeeecc----e---------eeccceeeeecCCCCcceEEec
Confidence            34678888876 4777777778888888752   3322221110    0         1123567888874 56877766


Q ss_pred             CCCeEEEEcCC-C--cEEEec
Q 010579          162 MNMAIRKISDT-G--VTTIAG  179 (507)
Q Consensus       162 ~N~rIrk~d~~-G--VstIaG  179 (507)
                      .++.|+.+|.. +  +.++.+
T Consensus       235 ~dg~v~~wd~~~~~~~~~~~~  255 (344)
T 4gqb_B          235 ENGTVSLVDTKSTSCVLSSAV  255 (344)
T ss_dssp             TTSEEEEEESCC--CCEEEEC
T ss_pred             cCCcEEEEECCCCcEEEEEcC
Confidence            78889999843 3  555543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=90.35  E-value=8.7  Score=40.14  Aligned_cols=114  Identities=9%  Similarity=-0.029  Sum_probs=63.7

Q ss_pred             eEEEEcCCCcEEEE---eCCC-CeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEe
Q 010579           86 FSVAVSPSGELLVL---DSEN-SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIAD  160 (507)
Q Consensus        86 ~gIaVd~dG~LYVa---Ds~n-~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVAD  160 (507)
                      ..++++|||..++.   |..+ ..|++++..+   +....+.+..                .....++++|||. |+.++
T Consensus       153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~---g~~~~l~~~~----------------~~~~~~~~SpDG~~l~~~~  213 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS---GGLRVFDSGE----------------GSFSSASISPGMKVTAGLE  213 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEEEETTT---CCCEEECCSS----------------CEEEEEEECTTSCEEEEEE
T ss_pred             ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC---CCceEeecCC----------------CccccceECCCCCEEEEcc
Confidence            68899999985552   2222 6799999763   4555543321                1236899999998 55444


Q ss_pred             CCC-CeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEEC
Q 010579          161 TMN-MAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQL  228 (507)
Q Consensus       161 s~N-~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l  228 (507)
                      ... .+|+++|.++  .. +..+..        +......-..+...++ +++|.|+++-..++.++.+..
T Consensus       214 ~~~~~~i~~~d~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~~~-spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          214 TAREARLVTVDPRDGSVE-DLELPS--------KDFSSYRPTAITWLGY-LPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             CSSCEEEEEECTTTCCEE-ECCCSC--------SHHHHHCCSEEEEEEE-CTTSCEEEEEEETTEEEEEET
T ss_pred             CCCeeEEEEEcCCCCcEE-EccCCC--------cChhhhhhccccceeE-cCCCcEEEEEEcCCcEEEEEE
Confidence            432 3899999554  33 321110        0000000001112223 566688777766777877777

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=90.28  E-value=14  Score=36.06  Aligned_cols=79  Identities=15%  Similarity=0.147  Sum_probs=43.6

Q ss_pred             CeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCC-CCEEEEeC
Q 010579           84 EPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDR-GNIYIADT  161 (507)
Q Consensus        84 ~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~d-GnIYVADs  161 (507)
                      .-..|++.+++. ++++-..++.|+.++...   ++.....-.             ...-..+..|++.++ ++++++=.
T Consensus       183 ~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~---~~~~~~~~~-------------~~~~~~v~~v~~sp~~~~~la~g~  246 (357)
T 4g56_B          183 EVNCVAACPGKDTIFLSCGEDGRILLWDTRK---PKPATRIDF-------------CASDTIPTSVTWHPEKDDTFACGD  246 (357)
T ss_dssp             CEEEEEECTTCSSCEEEEETTSCEEECCTTS---SSCBCBCCC-------------TTCCSCEEEEEECTTSTTEEEEEE
T ss_pred             CEEEEEEccCCCceeeeeccCCceEEEECCC---Cceeeeeee-------------ccccccccchhhhhcccceEEEee
Confidence            345677777653 666666667777776542   111100000             001124568899886 45666655


Q ss_pred             CCCeEEEEcCC-C--cEEEe
Q 010579          162 MNMAIRKISDT-G--VTTIA  178 (507)
Q Consensus       162 ~N~rIrk~d~~-G--VstIa  178 (507)
                      .++.|+.+|.. +  +.++.
T Consensus       247 ~d~~i~~wd~~~~~~~~~~~  266 (357)
T 4g56_B          247 ETGNVSLVNIKNPDSAQTSA  266 (357)
T ss_dssp             SSSCEEEEESSCGGGCEEEC
T ss_pred             cccceeEEECCCCcEeEEEe
Confidence            67789998843 3  45553

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=90.09  E-value=5.3  Score=37.02  Aligned_cols=115  Identities=9%  Similarity=0.049  Sum_probs=68.4

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCC-c-cEEEecCCCCccccCCCCcccccCCCcceEEEcC--CCCEEEE
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYS-R-PKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD--RGNIYIA  159 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g-~-i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~--dGnIYVA  159 (507)
                      .-..|+++++|.++++-...+.|+.++....... + ...+.+.                -.....|++.+  +|+++++
T Consensus        13 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~----------------~~~v~~~~~~~~~d~~~l~s   76 (351)
T 3f3f_A           13 LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAH----------------DSSIVAIDWASPEYGRIIAS   76 (351)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECC----------------SSCEEEEEECCGGGCSEEEE
T ss_pred             ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccC----------------CCcEEEEEEcCCCCCCEEEE
Confidence            3568999999998888777889999987631100 1 1111111                12356788887  5887776


Q ss_pred             eCCCCeEEEEcCCC------------cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCC--CeEEEEeCCCCeEEE
Q 010579          160 DTMNMAIRKISDTG------------VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSS--CSLLVIDRGNQAIRE  225 (507)
Q Consensus       160 Ds~N~rIrk~d~~G------------VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~--G~LyVaD~gn~rIr~  225 (507)
                      =+..+.|+.++...            +.++.+.                 -....++++ .++  +.++++-..++.|+.
T Consensus        77 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~-----------------~~~v~~~~~-~~~~~~~~l~~~~~dg~v~i  138 (351)
T 3f3f_A           77 ASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDS-----------------KGSLYSVKF-APAHLGLKLACLGNDGILRL  138 (351)
T ss_dssp             EETTSCEEEEEECTTSCTTSSCSEEEEEEECCC-----------------SSCEEEEEE-CCGGGCSEEEEEETTCEEEE
T ss_pred             EcCCCeEEEEecCCCcccccccCcceeeeeccc-----------------CCceeEEEE-cCCCCCcEEEEecCCCcEEE
Confidence            66677788877322            1222110                 112345654 444  666666566778888


Q ss_pred             EECCCCc
Q 010579          226 IQLHDDD  232 (507)
Q Consensus       226 I~l~~~~  232 (507)
                      +++....
T Consensus       139 wd~~~~~  145 (351)
T 3f3f_A          139 YDALEPS  145 (351)
T ss_dssp             EECSSTT
T ss_pred             ecCCChH
Confidence            8876544

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=90.06  E-value=8.1  Score=41.49  Aligned_cols=71  Identities=11%  Similarity=0.102  Sum_probs=52.7

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      .-..|+++++|.++++-+..+.|+.++...   +.. ..+.+.                -.....|+++++|+.+++=+.
T Consensus       432 ~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~---~~~~~~~~~h----------------~~~v~~~~~s~~~~~l~s~s~  492 (694)
T 3dm0_A          432 FVEDVVLSSDGQFALSGSWDGELRLWDLAA---GVSTRRFVGH----------------TKDVLSVAFSLDNRQIVSASR  492 (694)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTT---TEEEEEEECC----------------SSCEEEEEECTTSSCEEEEET
T ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEECCC---CcceeEEeCC----------------CCCEEEEEEeCCCCEEEEEeC
Confidence            356899999999999888889999999862   322 223222                123468999999998887777


Q ss_pred             CCeEEEEcCCC
Q 010579          163 NMAIRKISDTG  173 (507)
Q Consensus       163 N~rIrk~d~~G  173 (507)
                      .+.|+..+..+
T Consensus       493 D~~i~iwd~~~  503 (694)
T 3dm0_A          493 DRTIKLWNTLG  503 (694)
T ss_dssp             TSCEEEECTTS
T ss_pred             CCEEEEEECCC
Confidence            88899999655

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=89.99  E-value=5  Score=39.28  Aligned_cols=112  Identities=12%  Similarity=0.129  Sum_probs=71.7

Q ss_pred             EEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCCeEE
Q 010579           88 VAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIR  167 (507)
Q Consensus        88 IaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~rIr  167 (507)
                      .++.++|+++++-..++.|+.++...   +.......      +         .-.....|+++++|+++++=+.++.|+
T Consensus       103 ~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~------~---------h~~~v~~~~~~~~~~~l~s~s~d~~i~  164 (420)
T 3vl1_A          103 DTAKLQMRRFILGTTEGDIKVLDSNF---NLQREIDQ------A---------HVSEITKLKFFPSGEALISSSQDMQLK  164 (420)
T ss_dssp             EEECSSSCEEEEEETTSCEEEECTTS---CEEEEETT------S---------SSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             EEEecCCCEEEEEECCCCEEEEeCCC---cceeeecc------c---------ccCccEEEEECCCCCEEEEEeCCCeEE
Confidence            35677888888877788999998762   33322210      1         123456899999999777777788899


Q ss_pred             EEcCC-C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee
Q 010579          168 KISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD  235 (507)
Q Consensus       168 k~d~~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~  235 (507)
                      .++.. +  +.++.+-.                 ....++++ .+++.++++-...+.|+.+++....+..
T Consensus       165 iwd~~~~~~~~~~~~h~-----------------~~v~~~~~-~~~~~~l~s~~~d~~v~iwd~~~~~~~~  217 (420)
T 3vl1_A          165 IWSVKDGSNPRTLIGHR-----------------ATVTDIAI-IDRGRNVLSASLDGTIRLWECGTGTTIH  217 (420)
T ss_dssp             EEETTTCCCCEEEECCS-----------------SCEEEEEE-ETTTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEeCCCCcCceEEcCCC-----------------CcEEEEEE-cCCCCEEEEEcCCCcEEEeECCCCceeE
Confidence            99943 3  45553211                 12345665 4455555565567788888887665543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=89.93  E-value=13  Score=35.12  Aligned_cols=112  Identities=8%  Similarity=0.055  Sum_probs=72.8

Q ss_pred             eeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579           85 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  163 (507)
Q Consensus        85 P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N  163 (507)
                      -..+++.++|+++++-+..+.|+.++...   ++. ..+.+.                -..-..|++.+++.++++=+..
T Consensus        58 v~~~~~~~~~~~l~s~s~d~~i~vwd~~~---~~~~~~~~~h----------------~~~v~~~~~~~~~~~l~sgs~D  118 (304)
T 2ynn_A           58 VRAGKFIARKNWIIVGSDDFRIRVFNYNT---GEKVVDFEAH----------------PDYIRSIAVHPTKPYVLSGSDD  118 (304)
T ss_dssp             EEEEEEEGGGTEEEEEETTSEEEEEETTT---CCEEEEEECC----------------SSCEEEEEECSSSSEEEEEETT
T ss_pred             EEEEEEeCCCCEEEEECCCCEEEEEECCC---CcEEEEEeCC----------------CCcEEEEEEcCCCCEEEEECCC
Confidence            34778889999888888889999999863   332 223222                1235689999999988887778


Q ss_pred             CeEEEEcC-CC--c-EEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCc
Q 010579          164 MAIRKISD-TG--V-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD  232 (507)
Q Consensus       164 ~rIrk~d~-~G--V-stIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~  232 (507)
                      +.|+.+|. .+  + .++.+..                 ..-..+++.+.++.++++-...+.|+..++....
T Consensus       119 ~~v~lWd~~~~~~~~~~~~~h~-----------------~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~  174 (304)
T 2ynn_A          119 LTVKLWNWENNWALEQTFEGHE-----------------HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST  174 (304)
T ss_dssp             SCEEEEEGGGTTEEEEEECCCC-----------------SCEEEEEECTTCTTEEEEEETTSEEEEEETTCSS
T ss_pred             CeEEEEECCCCcchhhhhcccC-----------------CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence            88999883 33  2 2332110                 1224556544466666666667788888876543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=89.85  E-value=15  Score=39.43  Aligned_cols=69  Identities=6%  Similarity=0.026  Sum_probs=48.6

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      .-..++++++|.++++-...+.|+.++...   +.. ..+.+.                -.....++++++|..+++-+.
T Consensus        57 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~---~~~~~~~~~~----------------~~~v~~~~~s~~~~~l~~~~~  117 (814)
T 3mkq_A           57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNT---GEKVVDFEAH----------------PDYIRSIAVHPTKPYVLSGSD  117 (814)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEETTT---CCEEEEEECC----------------SSCEEEEEECSSSSEEEEEET
T ss_pred             cEEEEEEeCCCCEEEEEeCCCeEEEEECCC---CcEEEEEecC----------------CCCEEEEEEeCCCCEEEEEcC
Confidence            456899999998777777789999999762   332 222221                124668999999986666556


Q ss_pred             CCeEEEEcC
Q 010579          163 NMAIRKISD  171 (507)
Q Consensus       163 N~rIrk~d~  171 (507)
                      ++.|+.++.
T Consensus       118 dg~i~vw~~  126 (814)
T 3mkq_A          118 DLTVKLWNW  126 (814)
T ss_dssp             TSEEEEEEG
T ss_pred             CCEEEEEEC
Confidence            778888883

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=89.76  E-value=15  Score=36.26  Aligned_cols=110  Identities=15%  Similarity=0.137  Sum_probs=64.2

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccE-EEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPK-LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT  161 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~-~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs  161 (507)
                      ...+++++++|.++++-...+.|+.++...   +... .+.+.                -.....|++.++|. ++++-.
T Consensus       219 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~---~~~~~~~~~~----------------~~~v~~~~~~p~~~~ll~~~~  279 (401)
T 4aez_A          219 EVCGLAWRSDGLQLASGGNDNVVQIWDARS---SIPKFTKTNH----------------NAAVKAVAWCPWQSNLLATGG  279 (401)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTC---SSEEEEECCC----------------SSCCCEEEECTTSTTEEEEEC
T ss_pred             CeeEEEEcCCCCEEEEEeCCCeEEEccCCC---CCccEEecCC----------------cceEEEEEECCCCCCEEEEec
Confidence            456778888887777766677888888752   2222 11111                12456899999764 666644


Q ss_pred             --CCCeEEEEcCC-C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEE--eCCCCeEEEEECCCC
Q 010579          162 --MNMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVI--DRGNQAIREIQLHDD  231 (507)
Q Consensus       162 --~N~rIrk~d~~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVa--D~gn~rIr~I~l~~~  231 (507)
                        .++.|+.+|.. +  +.++..+                  .....+++ .+++..+++  ...++.|+.++....
T Consensus       280 gs~d~~i~i~d~~~~~~~~~~~~~------------------~~v~~~~~-s~~~~~l~~~~g~~dg~i~v~~~~~~  337 (401)
T 4aez_A          280 GTMDKQIHFWNAATGARVNTVDAG------------------SQVTSLIW-SPHSKEIMSTHGFPDNNLSIWSYSSS  337 (401)
T ss_dssp             CTTTCEEEEEETTTCCEEEEEECS------------------SCEEEEEE-CSSSSEEEEEECTTTCEEEEEEEETT
T ss_pred             CCCCCEEEEEECCCCCEEEEEeCC------------------CcEEEEEE-CCCCCeEEEEeecCCCcEEEEecCCc
Confidence              57889999943 3  3333211                  02345554 444444444  335677777776653

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=89.51  E-value=4.6  Score=39.30  Aligned_cols=124  Identities=10%  Similarity=0.034  Sum_probs=74.8

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCC--ccEEEecCCCCccccCCCCcccccCCCcceEEEcCC-CCEEEEe
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYS--RPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDR-GNIYIAD  160 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g--~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~d-GnIYVAD  160 (507)
                      ....|+++++|.++++-..++.|+.++......+  .+..+.+.                -.....|+++++ ++++++=
T Consensus        69 ~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h----------------~~~v~~~~~~~~~~~~l~s~  132 (416)
T 2pm9_A           69 KFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNH----------------SSSVKTVKFNAKQDNVLASG  132 (416)
T ss_dssp             CEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCS----------------SSCCCEEEECSSSTTBEEEE
T ss_pred             ceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCC----------------ccceEEEEEcCCCCCEEEEE
Confidence            4668999999987777777789999987631111  11111111                124568999998 7777777


Q ss_pred             CCCCeEEEEcCCC-c------EEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCce
Q 010579          161 TMNMAIRKISDTG-V------TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  233 (507)
Q Consensus       161 s~N~rIrk~d~~G-V------stIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~  233 (507)
                      ..++.|+.++... -      ..+.-..            ....-....++++.++.+.++++-...+.|+.+++....+
T Consensus       133 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~------------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~  200 (416)
T 2pm9_A          133 GNNGEIFIWDMNKCTESPSNYTPLTPGQ------------SMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE  200 (416)
T ss_dssp             CSSSCEEBCBTTTTSSCTTTCCCBCCCC------------SCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE
T ss_pred             cCCCeEEEEECCCCcccccccccccccc------------ccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc
Confidence            7778899888443 1      1110000            0011123456765433367777777778888888877655


Q ss_pred             ee
Q 010579          234 SD  235 (507)
Q Consensus       234 ~~  235 (507)
                      ..
T Consensus       201 ~~  202 (416)
T 2pm9_A          201 VI  202 (416)
T ss_dssp             EE
T ss_pred             ce
Confidence            43

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=89.50  E-value=3  Score=40.67  Aligned_cols=112  Identities=19%  Similarity=0.198  Sum_probs=68.3

Q ss_pred             eeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccE--EEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           85 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPK--LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        85 P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~--~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      -..|+++|+|.++++-...+.|+.++..+   +...  ....     .|+         -..-..|+++++|+++++=+.
T Consensus        19 v~~l~~sp~g~~las~~~D~~i~iw~~~~---~~~~~~~~~~-----~~h---------~~~v~~~~~sp~g~~l~s~s~   81 (345)
T 3fm0_A           19 CWFLAWNPAGTLLASCGGDRRIRIWGTEG---DSWICKSVLS-----EGH---------QRTVRKVAWSPCGNYLASASF   81 (345)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEEEEET---TEEEEEEEEC-----SSC---------SSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEEcCC---Ccceeeeeec-----ccc---------CCcEEEEEECCCCCEEEEEEC
Confidence            46899999999888888888999998752   2211  1110     111         123468999999997777666


Q ss_pred             CCeEEEEcC--CC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 010579          163 NMAIRKISD--TG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD  231 (507)
Q Consensus       163 N~rIrk~d~--~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~  231 (507)
                      .+.|+..+.  ..   +.++.+-.                 ..-.+|++ .++++++++-...+.|+..++...
T Consensus        82 D~~v~iw~~~~~~~~~~~~~~~h~-----------------~~v~~v~~-sp~~~~l~s~s~D~~v~iwd~~~~  137 (345)
T 3fm0_A           82 DATTCIWKKNQDDFECVTTLEGHE-----------------NEVKSVAW-APSGNLLATCSRDKSVWVWEVDEE  137 (345)
T ss_dssp             TSCEEEEEECCC-EEEEEEECCCS-----------------SCEEEEEE-CTTSSEEEEEETTSCEEEEEECTT
T ss_pred             CCcEEEEEccCCCeEEEEEccCCC-----------------CCceEEEE-eCCCCEEEEEECCCeEEEEECCCC
Confidence            666777662  22   22332110                 12345554 556666666666677777776543

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=89.47  E-value=12  Score=39.65  Aligned_cols=139  Identities=13%  Similarity=0.013  Sum_probs=79.1

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCC-CCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSP-EGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~-~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      .-..|+++|+|.++++-+..+.|+.++...   +......... ....++         -....+|+++++|.++++=+.
T Consensus       192 ~V~~v~fspdg~~las~s~D~~i~lwd~~~---g~~~~~~~~~~~~~~~h---------~~~V~~v~~spdg~~l~s~s~  259 (611)
T 1nr0_A          192 FVHSVRYNPDGSLFASTGGDGTIVLYNGVD---GTKTGVFEDDSLKNVAH---------SGSVFGLTWSPDGTKIASASA  259 (611)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTT---CCEEEECBCTTSSSCSS---------SSCEEEEEECTTSSEEEEEET
T ss_pred             ceEEEEECCCCCEEEEEECCCcEEEEECCC---CcEeeeecccccccccc---------CCCEEEEEECCCCCEEEEEeC
Confidence            456889999999888888888999998652   3322221110 000011         234678999999998888777


Q ss_pred             CCeEEEEcCC-C--cEEEecCcccC-------------CCCCCCCCc---------c----CccCCCCceEEEEcCCCeE
Q 010579          163 NMAIRKISDT-G--VTTIAGGKWSR-------------GVGHVDGPS---------E----DAKFSNDFDVVYVGSSCSL  213 (507)
Q Consensus       163 N~rIrk~d~~-G--VstIaGG~~g~-------------~~G~~dg~~---------~----~a~f~~P~gIa~vd~~G~L  213 (507)
                      .+.|+..|.. +  +.++..+....             ..+..|+..         .    ...-..-.++++ .+++..
T Consensus       260 D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~-spdg~~  338 (611)
T 1nr0_A          260 DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSS-SADGKT  338 (611)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEE-CTTSSE
T ss_pred             CCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEE-eCCCCE
Confidence            8889999843 3  33332210000             000001100         0    001122345664 556666


Q ss_pred             EEEeCCCCeEEEEECCCCceee
Q 010579          214 LVIDRGNQAIREIQLHDDDCSD  235 (507)
Q Consensus       214 yVaD~gn~rIr~I~l~~~~~~~  235 (507)
                      +++-...+.|+..++....+..
T Consensus       339 l~s~s~D~~v~~Wd~~~~~~~~  360 (611)
T 1nr0_A          339 LFSADAEGHINSWDISTGISNR  360 (611)
T ss_dssp             EEEEETTSCEEEEETTTCCEEE
T ss_pred             EEEEeCCCcEEEEECCCCceee
Confidence            6666667888888887766654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=89.24  E-value=16  Score=35.07  Aligned_cols=116  Identities=8%  Similarity=-0.007  Sum_probs=73.9

Q ss_pred             CeeEEEEcC--CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeC
Q 010579           84 EPFSVAVSP--SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT  161 (507)
Q Consensus        84 ~P~gIaVd~--dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs  161 (507)
                      .-..+++++  +|+++++-+..+.|+.++...   +....+....              .-.....++++++|.++++=+
T Consensus       127 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~---~~~~~~~~~~--------------~~~~i~~~~~~pdg~~lasg~  189 (343)
T 3lrv_A          127 EIIYMYGHNEVNTEYFIWADNRGTIGFQSYED---DSQYIVHSAK--------------SDVEYSSGVLHKDSLLLALYS  189 (343)
T ss_dssp             CEEEEECCC---CCEEEEEETTCCEEEEESSS---SCEEEEECCC--------------SSCCCCEEEECTTSCEEEEEC
T ss_pred             CEEEEEcCCCCCCCEEEEEeCCCcEEEEECCC---CcEEEEEecC--------------CCCceEEEEECCCCCEEEEEc
Confidence            367889999  999988888889999999862   3332222110              011356899999999888867


Q ss_pred             CCCeEEEEcCC-C--c-EEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCcee
Q 010579          162 MNMAIRKISDT-G--V-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS  234 (507)
Q Consensus       162 ~N~rIrk~d~~-G--V-stIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~  234 (507)
                      .++.|+.+|.. +  + .++.++.                -.....|++ .+++.++++-..+ .|+.+++....+.
T Consensus       190 ~dg~i~iwd~~~~~~~~~~~~~~h----------------~~~v~~l~f-s~~g~~l~s~~~~-~v~iwd~~~~~~~  248 (343)
T 3lrv_A          190 PDGILDVYNLSSPDQASSRFPVDE----------------EAKIKEVKF-ADNGYWMVVECDQ-TVVCFDLRKDVGT  248 (343)
T ss_dssp             TTSCEEEEESSCTTSCCEECCCCT----------------TSCEEEEEE-CTTSSEEEEEESS-BEEEEETTSSTTC
T ss_pred             CCCEEEEEECCCCCCCccEEeccC----------------CCCEEEEEE-eCCCCEEEEEeCC-eEEEEEcCCCCcc
Confidence            78889999943 3  3 3332200                013356775 4555544444333 9999999876654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=89.10  E-value=6.7  Score=38.61  Aligned_cols=141  Identities=12%  Similarity=0.138  Sum_probs=76.3

Q ss_pred             CeeEEEEcCCC-cEEEEeCCCCeEEEEeCCCCCC--CccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEe
Q 010579           84 EPFSVAVSPSG-ELLVLDSENSNIYKISTSLSPY--SRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIAD  160 (507)
Q Consensus        84 ~P~gIaVd~dG-~LYVaDs~n~rI~ki~~~g~~~--g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVAD  160 (507)
                      ....++++|+| +++++-+..+.|+.++......  ..+.++-+....  .  ..............|+++++|.++++-
T Consensus       228 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~v~~~~~s~~g~~l~~~  303 (447)
T 3dw8_B          228 VITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDP--S--NRSFFSEIISSISDVKFSHSGRYMMTR  303 (447)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC---------CCHHHHHTTCEEEEEECTTSSEEEEE
T ss_pred             ceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCc--c--ccccccccCceEEEEEECCCCCEEEEe
Confidence            46789999998 8888888889999999763210  002333222100  0  000000011245689999999977765


Q ss_pred             CCCCeEEEEcCC--C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCc
Q 010579          161 TMNMAIRKISDT--G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD  232 (507)
Q Consensus       161 s~N~rIrk~d~~--G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~  232 (507)
                      .. +.|+.+|..  +  +.++.+.......  .........+.....+++ .+++..+++-..++.|+.+++....
T Consensus       304 ~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~i~~~~~~~~-s~~~~~l~s~s~dg~v~iwd~~~~~  375 (447)
T 3dw8_B          304 DY-LSVKVWDLNMENRPVETYQVHEYLRSK--LCSLYENDCIFDKFECCW-NGSDSVVMTGSYNNFFRMFDRNTKR  375 (447)
T ss_dssp             ES-SEEEEEETTCCSSCSCCEESCGGGTTT--HHHHHHTSGGGCCCCEEE-CTTSSEEEEECSTTEEEEEETTTCC
T ss_pred             eC-CeEEEEeCCCCccccceeecccccccc--ccccccccccccceEEEE-CCCCCEEEEeccCCEEEEEEcCCCc
Confidence            55 889999843  4  4444332110000  000000011112234664 5666666777778888888876543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=88.93  E-value=2.1  Score=41.50  Aligned_cols=132  Identities=11%  Similarity=-0.034  Sum_probs=70.3

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCC-CccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPY-SRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~-g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      ....++++++|.++++-...+.|+.++...... .....+.+.               .-.....|+++++|+++++-+.
T Consensus       102 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---------------h~~~v~~~~~~~~~~~l~~~~~  166 (377)
T 3dwl_C          102 AATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRP---------------LRSTILSLDWHPNNVLLAAGCA  166 (377)
T ss_dssp             CEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSS---------------CCSCEEEEEECTTSSEEEEEES
T ss_pred             ceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecc---------------cCCCeEEEEEcCCCCEEEEEeC
Confidence            466888888888777766778888888752110 012222210               1124568999999997777666


Q ss_pred             CCeEEEEcCC--CcEEE-ecCcccCCCCCCCC-Ccc-CccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCce
Q 010579          163 NMAIRKISDT--GVTTI-AGGKWSRGVGHVDG-PSE-DAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  233 (507)
Q Consensus       163 N~rIrk~d~~--GVstI-aGG~~g~~~G~~dg-~~~-~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~  233 (507)
                      .+.|+.++..  .+..- .....+.  ....+ ... -..-.....+++ .+++.++++-..++.|+.+++....+
T Consensus       167 d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~-sp~~~~l~~~~~d~~i~iwd~~~~~~  239 (377)
T 3dwl_C          167 DRKAYVLSAYVRDVDAKPEASVWGS--RLPFNTVCAEYPSGGWVHAVGF-SPSGNALAYAGHDSSVTIAYPSAPEQ  239 (377)
T ss_dssp             SSCEEEEEECCSSCC-CCCSCSSCS--CCCEEEEEECCCCSSSEEEEEE-CTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred             CCEEEEEEEEecccCCCcccccccc--ccchhhhhhcccCCceEEEEEE-CCCCCEEEEEeCCCcEEEEECCCCCC
Confidence            7778888842  11000 0000000  00000 000 001112356664 56777666666778999999887765

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=88.92  E-value=11  Score=37.75  Aligned_cols=126  Identities=9%  Similarity=0.014  Sum_probs=72.9

Q ss_pred             CeeEEEEcCC---CcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEE
Q 010579           84 EPFSVAVSPS---GELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIA  159 (507)
Q Consensus        84 ~P~gIaVd~d---G~LYVaDs~n~rI~ki~~~g~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVA  159 (507)
                      ....|+++++   |.++++-...+.|+.++...   +.. ..+..      |+         -.....|+++ +|.++++
T Consensus       197 ~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~---~~~~~~~~~------~h---------~~~v~~~~~s-d~~~l~s  257 (450)
T 2vdu_B          197 MLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ---CFIVDKWLF------GH---------KHFVSSICCG-KDYLLLS  257 (450)
T ss_dssp             CEEEEEEEECTTSCEEEEEEETTSCEEEEEESC---TTCEEEECC------CC---------SSCEEEEEEC-STTEEEE
T ss_pred             ceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC---Cceeeeeec------CC---------CCceEEEEEC-CCCEEEE
Confidence            4678899998   87777767778999998752   222 22110      11         1346789999 9988887


Q ss_pred             eCCCCeEEEEcC-CC--cEEEecCcccCCCC---CCC-----CCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEEC
Q 010579          160 DTMNMAIRKISD-TG--VTTIAGGKWSRGVG---HVD-----GPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQL  228 (507)
Q Consensus       160 Ds~N~rIrk~d~-~G--VstIaGG~~g~~~G---~~d-----g~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l  228 (507)
                      -+..+.|+.+|. .+  +.++.........-   ...     .......-....+|++.++...|+++....+.|+.+++
T Consensus       258 ~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          258 AGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             EESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             EeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence            778889999994 34  44443211000000   000     00000011223567765555567777767889999988

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=88.89  E-value=15  Score=34.45  Aligned_cols=113  Identities=13%  Similarity=0.109  Sum_probs=72.5

Q ss_pred             CeeEEEEcCC----CcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCccccCCCCcccccCCCcceEEEcC-CCCEE
Q 010579           84 EPFSVAVSPS----GELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIY  157 (507)
Q Consensus        84 ~P~gIaVd~d----G~LYVaDs~n~rI~ki~~~g~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~-dGnIY  157 (507)
                      .-..+++.++    |.++++-..++.|+.++...   ++. ..+.+.                -.....|++++ +++++
T Consensus        71 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~---~~~~~~~~~~----------------~~~i~~~~~~~~~~~~l  131 (366)
T 3k26_A           71 NFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT---MQCIKHYVGH----------------GNAINELKFHPRDPNLL  131 (366)
T ss_dssp             CEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT---CCEEEEEESC----------------CSCEEEEEECSSCTTEE
T ss_pred             cEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh---ceEeeeecCC----------------CCcEEEEEECCCCCCEE
Confidence            4568888887    66777777789999999762   322 222221                12456899999 88877


Q ss_pred             EEeCCCCeEEEEcCC-C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCC
Q 010579          158 IADTMNMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  230 (507)
Q Consensus       158 VADs~N~rIrk~d~~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~  230 (507)
                      ++=...+.|+.++.. +  +.++..-.              ..-....++++ .+++.++++-..++.|+.+++..
T Consensus       132 ~s~~~dg~i~iwd~~~~~~~~~~~~~~--------------~~~~~v~~~~~-~~~~~~l~~~~~dg~i~i~d~~~  192 (366)
T 3k26_A          132 LSVSKDHALRLWNIQTDTLVAIFGGVE--------------GHRDEVLSADY-DLLGEKIMSCGMDHSLKLWRINS  192 (366)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECSTT--------------SCSSCEEEEEE-CTTSSEEEEEETTSCEEEEESCS
T ss_pred             EEEeCCCeEEEEEeecCeEEEEecccc--------------cccCceeEEEE-CCCCCEEEEecCCCCEEEEECCC
Confidence            777778889999944 3  33331100              00123456665 55666666666678899998764

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=88.56  E-value=5.8  Score=43.41  Aligned_cols=116  Identities=16%  Similarity=0.146  Sum_probs=72.8

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  163 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N  163 (507)
                      ....|+.|++|+|||+...++.|.++++.   .+++..+...  +..          .-+.+..|+.|.+|+|||+-.  
T Consensus       473 ~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~---~~~~~~~~~~--~~~----------~~~~~~~i~~d~~g~lWigt~--  535 (758)
T 3ott_A          473 FINQIIPDNEGNVWVLLYNNKGIDKINPR---TREVTKLFAD--ELT----------GEKSPNYLLCDEDGLLWVGFH--  535 (758)
T ss_dssp             CEEEEEECTTSCEEEEETTCSSEEEEETT---TTEEEEECTT--TSC----------GGGCEEEEEECTTSCEEEEET--
T ss_pred             eeeeEEEcCCCCEEEEccCCCCcEEEeCC---CCceEEecCC--CcC----------CCcccceEEECCCCCEEEEec--
Confidence            46778999999999944445679999986   3444444211  000          013567899999999999963  


Q ss_pred             CeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCcee
Q 010579          164 MAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS  234 (507)
Q Consensus       164 ~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~  234 (507)
                      .-|.+++...  +..+.          .++...    +...+|+ . ++|+|||..  ++-|.++++....+.
T Consensus       536 ~Gl~~~~~~~~~~~~~~----------~~gl~~----~~i~~i~-~-~~g~lWi~t--~~Gl~~~~~~~~~~~  590 (758)
T 3ott_A          536 GGVMRINPKDESQQSIS----------FGSFSN----NEILSMT-C-VKNSIWVST--TNGLWIIDRKTMDAR  590 (758)
T ss_dssp             TEEEEECC--CCCCBCC----------CCC-------CCEEEEE-E-ETTEEEEEE--SSCEEEEETTTCCEE
T ss_pred             CceEEEecCCCceEEec----------ccCCCc----cceEEEE-E-CCCCEEEEC--CCCeEEEcCCCceeE
Confidence            4699999644  22221          011111    2345554 3 489999998  456899998876554

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=88.36  E-value=7.5  Score=41.69  Aligned_cols=69  Identities=10%  Similarity=0.110  Sum_probs=42.1

Q ss_pred             eeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeCC
Q 010579           85 PFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTM  162 (507)
Q Consensus        85 P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs~  162 (507)
                      ...++++|||. |+++..  +.|+.++..+.....+..+.+.                -..+..++++|||+ |+++.  
T Consensus       111 v~~~~~SpDg~~l~~~~~--~~i~~~d~~~~~~~~~~~l~~~----------------~~~~~~~~~SPDG~~la~~~--  170 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLG--GELYLYDLKQEGKAAVRQLTHG----------------EGFATDAKLSPKGGFVSFIR--  170 (741)
T ss_dssp             SCCCEECTTSSEEEEEET--TEEEEEESSSCSTTSCCBCCCS----------------SSCEEEEEECTTSSEEEEEE--
T ss_pred             cceeEECCCCCEEEEEeC--CcEEEEECCCCCcceEEEcccC----------------CcccccccCCCCCCEEEEEe--
Confidence            35789999998 444443  8999999873200022221111                12466899999998 44444  


Q ss_pred             CCeEEEEcCCC
Q 010579          163 NMAIRKISDTG  173 (507)
Q Consensus       163 N~rIrk~d~~G  173 (507)
                      ++.|++++.++
T Consensus       171 ~~~i~~~d~~~  181 (741)
T 2ecf_A          171 GRNLWVIDLAS  181 (741)
T ss_dssp             TTEEEEEETTT
T ss_pred             CCcEEEEecCC
Confidence            34788888544

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=88.35  E-value=17  Score=34.12  Aligned_cols=114  Identities=18%  Similarity=0.191  Sum_probs=73.9

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      .-..++++++|+++++-...+.|+.++...   ++. ..+-+.                -.....++++++|+++++=..
T Consensus        67 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~---~~~~~~~~~~----------------~~~v~~~~~~~~~~~l~s~~~  127 (312)
T 4ery_A           67 GISDVAWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLKGH----------------SNYVFCCNFNPQSNLIVSGSF  127 (312)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTT---CCEEEEEECC----------------SSCEEEEEECSSSSEEEEEET
T ss_pred             ceEEEEEcCCCCEEEEECCCCEEEEEECCC---CcEEEEEcCC----------------CCCEEEEEEcCCCCEEEEEeC
Confidence            456899999999888888889999999762   322 222221                123457889999998887777


Q ss_pred             CCeEEEEcCC-C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCcee
Q 010579          163 NMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS  234 (507)
Q Consensus       163 N~rIrk~d~~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~  234 (507)
                      ++.|+.+|.. +  +.++.+..                 ..-..+++ .+++.++++-...+.|+.+++....+.
T Consensus       128 d~~i~iwd~~~~~~~~~~~~~~-----------------~~v~~~~~-~~~~~~l~~~~~d~~i~~wd~~~~~~~  184 (312)
T 4ery_A          128 DESVRIWDVKTGKCLKTLPAHS-----------------DPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCL  184 (312)
T ss_dssp             TSCEEEEETTTCCEEEEECCCS-----------------SCEEEEEE-CTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             CCcEEEEECCCCEEEEEecCCC-----------------CcEEEEEE-cCCCCEEEEEeCCCcEEEEECCCCcee
Confidence            8889999843 3  33332110                 01234443 556666666666777888887765543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=88.27  E-value=31  Score=37.07  Aligned_cols=114  Identities=11%  Similarity=0.055  Sum_probs=67.4

Q ss_pred             CeeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC--CCCEEEEe
Q 010579           84 EPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD--RGNIYIAD  160 (507)
Q Consensus        84 ~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~--dGnIYVAD  160 (507)
                      ....++++| +|.++++-+..+.|+.++.....  ....+.+..               -.....+++.+  +|.++++-
T Consensus       142 ~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~--~~~~~~~~~---------------~~~v~~~~~~~~~~~~~l~~~  204 (814)
T 3mkq_A          142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST--PNFTLTTGQ---------------ERGVNYVDYYPLPDKPYMITA  204 (814)
T ss_dssp             CEEEEEEETTEEEEEEEEETTSEEEEEETTCSS--CSEEEECCC---------------TTCCCEEEECCSTTCCEEEEE
T ss_pred             cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--ceeEEecCC---------------CCCEEEEEEEECCCCCEEEEE
Confidence            467888998 78788877778899999875211  112222110               12345788887  88888877


Q ss_pred             CCCCeEEEEcCC-C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCc
Q 010579          161 TMNMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD  232 (507)
Q Consensus       161 s~N~rIrk~d~~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~  232 (507)
                      ..++.|+.++.. +  +.++.+..                 .....+++ .+++.++++-...+.|+.+++....
T Consensus       205 ~~dg~i~~~d~~~~~~~~~~~~~~-----------------~~v~~~~~-~~~~~~l~~~~~dg~v~vwd~~~~~  261 (814)
T 3mkq_A          205 SDDLTIKIWDYQTKSCVATLEGHM-----------------SNVSFAVF-HPTLPIIISGSEDGTLKIWNSSTYK  261 (814)
T ss_dssp             CTTSEEEEEETTTTEEEEEEECCS-----------------SCEEEEEE-CSSSSEEEEEETTSCEEEEETTTCS
T ss_pred             eCCCEEEEEECCCCcEEEEEcCCC-----------------CCEEEEEE-cCCCCEEEEEeCCCeEEEEECCCCc
Confidence            778899999843 3  34443211                 11234443 4455555554455666666665544

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=87.91  E-value=8.7  Score=36.31  Aligned_cols=113  Identities=9%  Similarity=0.078  Sum_probs=65.9

Q ss_pred             eeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC--CCCEEEEeCC
Q 010579           85 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD--RGNIYIADTM  162 (507)
Q Consensus        85 P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~--dGnIYVADs~  162 (507)
                      =..++++++|.++++-+..+.|+.++..+.....+.++.|..                ..-..|++.+  +|+++++=+.
T Consensus        12 V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~----------------~~V~~v~~s~~~~g~~l~s~s~   75 (297)
T 2pm7_B           12 IHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHE----------------GPVWRVDWAHPKFGTILASCSY   75 (297)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCS----------------SCEEEEEECCGGGCSEEEEEET
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEcccc----------------CCeEEEEecCCCcCCEEEEEcC
Confidence            357899999999888888899999987521111123332221                1234677754  4787777667


Q ss_pred             CCeEEEEcCC-C----cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcC-CCeEEEEeCCCCeEEEEECCC
Q 010579          163 NMAIRKISDT-G----VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGS-SCSLLVIDRGNQAIREIQLHD  230 (507)
Q Consensus       163 N~rIrk~d~~-G----VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~-~G~LyVaD~gn~rIr~I~l~~  230 (507)
                      .+.|+..+.. +    +.++.+..                 ..-..|++.+. .+.++++-...+.|+.+++..
T Consensus        76 D~~v~iWd~~~~~~~~~~~~~~h~-----------------~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~  132 (297)
T 2pm7_B           76 DGKVMIWKEENGRWSQIAVHAVHS-----------------ASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKE  132 (297)
T ss_dssp             TTEEEEEEBSSSCBCCCEEECCCS-----------------SCEEEEEECCGGGCSEEEEEETTSEEEEEEBCS
T ss_pred             CCEEEEEEcCCCceEEEEEeecCC-----------------CceeEEEeCcCCCCcEEEEEECCCcEEEEEecC
Confidence            7788888743 2    22221100                 01234554322 155566656667788887754

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=87.76  E-value=11  Score=40.40  Aligned_cols=85  Identities=11%  Similarity=0.118  Sum_probs=45.2

Q ss_pred             CCeeEEEEcCCCc-EEEEeCCCC-----eEEEEeCCCCCCCccEEEecCCCCcc-c---cCCCCccc--ccC---CCcce
Q 010579           83 MEPFSVAVSPSGE-LLVLDSENS-----NIYKISTSLSPYSRPKLVAGSPEGYY-G---HVDGRPRG--ARM---NHPKG  147 (507)
Q Consensus        83 ~~P~gIaVd~dG~-LYVaDs~n~-----rI~ki~~~g~~~g~i~~vaG~~~G~~-G---~~dG~~~~--a~f---n~P~G  147 (507)
                      ..+..++++|||. |+++....+     .|+.++..+   +....+........ |   ..++....  .++   .....
T Consensus        37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  113 (741)
T 2ecf_A           37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGS---GQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD  113 (741)
T ss_dssp             CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTT---CCEEEEECGGGTC--------------------CCEESCC
T ss_pred             CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCC---CceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence            3578999999997 455444234     899999873   44433332110000 0   00000000  000   12467


Q ss_pred             EEEcCCCC-EEEEeCCCCeEEEEcCC
Q 010579          148 LAVDDRGN-IYIADTMNMAIRKISDT  172 (507)
Q Consensus       148 IaVd~dGn-IYVADs~N~rIrk~d~~  172 (507)
                      +++++||. |+++..  ..|+.++.+
T Consensus       114 ~~~SpDg~~l~~~~~--~~i~~~d~~  137 (741)
T 2ecf_A          114 YQWSPDAQRLLFPLG--GELYLYDLK  137 (741)
T ss_dssp             CEECTTSSEEEEEET--TEEEEEESS
T ss_pred             eEECCCCCEEEEEeC--CcEEEEECC
Confidence            89999998 555553  778888844

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=87.41  E-value=16  Score=34.98  Aligned_cols=87  Identities=15%  Similarity=0.128  Sum_probs=49.1

Q ss_pred             CeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           84 EPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      .-..+++.++|. ++++-...+.|+.++..... ..+..+-... +......-......-.....++++++|+.+++-..
T Consensus       188 ~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  265 (408)
T 4a11_B          188 EILAVSWSPRYDYILATASADSRVKLWDVRRAS-GCLITLDQHN-GKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT  265 (408)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEEETTCSS-CCSEECCTTT-TCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET
T ss_pred             cEEEEEECCCCCcEEEEEcCCCcEEEEECCCCC-cccccccccc-cccceeeccccccccCceeEEEEcCCCCEEEEecC
Confidence            456788888876 67676677888888875221 1122221110 00000000000112234678999999997777667


Q ss_pred             CCeEEEEcCC
Q 010579          163 NMAIRKISDT  172 (507)
Q Consensus       163 N~rIrk~d~~  172 (507)
                      ++.|+.++..
T Consensus       266 dg~i~vwd~~  275 (408)
T 4a11_B          266 DNRMRLWNSS  275 (408)
T ss_dssp             TSCEEEEETT
T ss_pred             CCeEEEEECC
Confidence            7889999843

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=87.39  E-value=3.3  Score=43.98  Aligned_cols=117  Identities=12%  Similarity=0.106  Sum_probs=61.5

Q ss_pred             CeeEEEEcCCCc-EEEEeCC---------CCeEEEEeCCCCC---CCccEEEe-cCCCCccccCCCCcccccCCCcceEE
Q 010579           84 EPFSVAVSPSGE-LLVLDSE---------NSNIYKISTSLSP---YSRPKLVA-GSPEGYYGHVDGRPRGARMNHPKGLA  149 (507)
Q Consensus        84 ~P~gIaVd~dG~-LYVaDs~---------n~rI~ki~~~g~~---~g~i~~va-G~~~G~~G~~dG~~~~a~fn~P~GIa  149 (507)
                      ...+++++|||. |+++...         ...|++++.++..   .+....+. ...                ....+++
T Consensus       131 ~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~----------------~~~~~~~  194 (662)
T 3azo_A          131 RWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAH----------------RFVTGPR  194 (662)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCS----------------SEECCCE
T ss_pred             cccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCC----------------CcccCce
Confidence            456889999997 4443321         2588899886310   02333332 110                1234678


Q ss_pred             EcCCCC-EEEEeCC-------CCeEEEEcCC--C----cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEE
Q 010579          150 VDDRGN-IYIADTM-------NMAIRKISDT--G----VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLV  215 (507)
Q Consensus       150 Vd~dGn-IYVADs~-------N~rIrk~d~~--G----VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyV  215 (507)
                      +++||. |+++...       ...|+.++.+  |    ...+..+..                .....+++ .++|.||+
T Consensus       195 ~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~----------------~~~~~~~~-spdg~l~~  257 (662)
T 3azo_A          195 LSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE----------------EAIAQAEW-APDGSLIV  257 (662)
T ss_dssp             ECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT----------------BCEEEEEE-CTTSCEEE
T ss_pred             ECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC----------------ceEcceEE-CCCCeEEE
Confidence            999997 5544422       2478888733  4    233322110                12334554 44555655


Q ss_pred             EeCCCC--eEEEEECCCCce
Q 010579          216 IDRGNQ--AIREIQLHDDDC  233 (507)
Q Consensus       216 aD~gn~--rIr~I~l~~~~~  233 (507)
                      +...++  +|+++++.+..+
T Consensus       258 ~~~~~~~~~l~~~~~~~~~~  277 (662)
T 3azo_A          258 ATDRTGWWNLHRVDPATGAA  277 (662)
T ss_dssp             EECTTSSCEEEEECTTTCCE
T ss_pred             EECCCCCeEEEEEECCCCce
Confidence            544334  777777655443

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=87.32  E-value=2.4  Score=42.03  Aligned_cols=68  Identities=18%  Similarity=0.137  Sum_probs=51.0

Q ss_pred             eeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccE-EEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579           85 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPK-LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  163 (507)
Q Consensus        85 P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~-~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N  163 (507)
                      -..|+++|||.++++-+..+.|+.++..   .++.. .+.      .|+         -...+.|+++|||.++++=+..
T Consensus       272 V~~~~~Spdg~~lasgs~D~~V~iwd~~---~~~~~~~~~------~gH---------~~~V~~v~fSpdg~~laS~S~D  333 (365)
T 4h5i_A          272 ITSMDVDMKGELAVLASNDNSIALVKLK---DLSMSKIFK------QAH---------SFAITEVTISPDSTYVASVSAA  333 (365)
T ss_dssp             EEEEEECTTSCEEEEEETTSCEEEEETT---TTEEEEEET------TSS---------SSCEEEEEECTTSCEEEEEETT
T ss_pred             eEeEEECCCCCceEEEcCCCEEEEEECC---CCcEEEEec------Ccc---------cCCEEEEEECCCCCEEEEEeCC
Confidence            4678999999998888888899999976   23322 221      111         1245799999999999988888


Q ss_pred             CeEEEEc
Q 010579          164 MAIRKIS  170 (507)
Q Consensus       164 ~rIrk~d  170 (507)
                      +.||+++
T Consensus       334 ~tvrvw~  340 (365)
T 4h5i_A          334 NTIHIIK  340 (365)
T ss_dssp             SEEEEEE
T ss_pred             CeEEEEE
Confidence            8899988

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=87.17  E-value=20  Score=33.69  Aligned_cols=75  Identities=12%  Similarity=0.078  Sum_probs=52.9

Q ss_pred             CeeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           84 EPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      .-..|++.+ +++++++-...+.|+.++...   +.........   .+         .-.....|+++++|+.+++=..
T Consensus       117 ~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~---~~---------~~~~v~~~~~~~~~~~l~~~~~  181 (366)
T 3k26_A          117 AINELKFHPRDPNLLLSVSKDHALRLWNIQT---DTLVAIFGGV---EG---------HRDEVLSADYDLLGEKIMSCGM  181 (366)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEEETTT---TEEEEEECST---TS---------CSSCEEEEEECTTSSEEEEEET
T ss_pred             cEEEEEECCCCCCEEEEEeCCCeEEEEEeec---CeEEEEeccc---cc---------ccCceeEEEECCCCCEEEEecC
Confidence            567899999 888888877889999999862   3333332110   01         1235678999999997777777


Q ss_pred             CCeEEEEcCCC
Q 010579          163 NMAIRKISDTG  173 (507)
Q Consensus       163 N~rIrk~d~~G  173 (507)
                      ++.|+.++...
T Consensus       182 dg~i~i~d~~~  192 (366)
T 3k26_A          182 DHSLKLWRINS  192 (366)
T ss_dssp             TSCEEEEESCS
T ss_pred             CCCEEEEECCC
Confidence            88899998543

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=86.62  E-value=16  Score=35.74  Aligned_cols=125  Identities=11%  Similarity=-0.008  Sum_probs=73.8

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCe-EEEEeCCCCCCCcc-EEEe-cCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEe
Q 010579           84 EPFSVAVSPSGELLVLDSENSN-IYKISTSLSPYSRP-KLVA-GSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIAD  160 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~r-I~ki~~~g~~~g~i-~~va-G~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVAD  160 (507)
                      .-..|+++|+|.++++-+..+. |+.++...   ++. ..+. |..               -.....|+++++|+++++-
T Consensus       197 ~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~---~~~~~~~~~g~h---------------~~~v~~~~~s~~~~~l~s~  258 (355)
T 3vu4_A          197 PIKMVRLNRKSDMVATCSQDGTIIRVFKTED---GVLVREFRRGLD---------------RADVVDMKWSTDGSKLAVV  258 (355)
T ss_dssp             CEEEEEECTTSSEEEEEETTCSEEEEEETTT---CCEEEEEECTTC---------------CSCEEEEEECTTSCEEEEE
T ss_pred             ceEEEEECCCCCEEEEEeCCCCEEEEEECCC---CcEEEEEEcCCC---------------CCcEEEEEECCCCCEEEEE
Confidence            4578999999999988888887 99999862   332 2332 200               1245689999999988887


Q ss_pred             CCCCeEEEEcCCC-----cEEEecCcccCCCCCCCCCc--cCccCC----CCceEEEEcCCCeEEEEeCCCCeEEEEECC
Q 010579          161 TMNMAIRKISDTG-----VTTIAGGKWSRGVGHVDGPS--EDAKFS----NDFDVVYVGSSCSLLVIDRGNQAIREIQLH  229 (507)
Q Consensus       161 s~N~rIrk~d~~G-----VstIaGG~~g~~~G~~dg~~--~~a~f~----~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~  229 (507)
                      +..+.|+.++-..     ...+.+-..   ..+.+..-  ....+.    .+..++...+++..+++-..++++++++..
T Consensus       259 s~d~~v~iw~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~  335 (355)
T 3vu4_A          259 SDKWTLHVFEIFNDQDNKRHALKGWIN---MKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVV  335 (355)
T ss_dssp             ETTCEEEEEESSCCSCCCSEETTTTEE---CCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEE
T ss_pred             ECCCEEEEEEccCCCCcccccccceee---ccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence            7788899988321     121111000   00000000  000011    111333357788777777778888888754

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=86.49  E-value=26  Score=34.45  Aligned_cols=117  Identities=17%  Similarity=0.232  Sum_probs=72.6

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC-CCCEEEEeCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~-dGnIYVADs~  162 (507)
                      .-..|++.++|..+++-+..+.|+.++...   +.........                .....+++.+ +|+++++-+.
T Consensus       167 ~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~---~~~~~~~~~~----------------~~v~~~~~~~~~~~~l~~~s~  227 (393)
T 1erj_A          167 DIYSLDYFPSGDKLVSGSGDRTVRIWDLRT---GQCSLTLSIE----------------DGVTTVAVSPGDGKYIAAGSL  227 (393)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTT---TEEEEEEECS----------------SCEEEEEECSTTCCEEEEEET
T ss_pred             CEEEEEEcCCCCEEEEecCCCcEEEEECCC---CeeEEEEEcC----------------CCcEEEEEECCCCCEEEEEcC
Confidence            456899999999888888889999999762   3332222110                1355788888 8888888777


Q ss_pred             CCeEEEEcCC-C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCC
Q 010579          163 NMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  230 (507)
Q Consensus       163 N~rIrk~d~~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~  230 (507)
                      .+.|+.+|.. +  +..+..... .         ....-....+|++ .+++.++++-...+.|+.+++..
T Consensus       228 d~~v~iwd~~~~~~~~~~~~~~~-~---------~~~h~~~v~~v~~-~~~g~~l~s~s~d~~v~~wd~~~  287 (393)
T 1erj_A          228 DRAVRVWDSETGFLVERLDSENE-S---------GTGHKDSVYSVVF-TRDGQSVVSGSLDRSVKLWNLQN  287 (393)
T ss_dssp             TSCEEEEETTTCCEEEEEC----------------CCCSSCEEEEEE-CTTSSEEEEEETTSEEEEEEC--
T ss_pred             CCcEEEEECCCCcEEEeeccccc-C---------CCCCCCCEEEEEE-CCCCCEEEEEeCCCEEEEEECCC
Confidence            8889999843 3  333311000 0         0001113346664 56677667767778888888764

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=86.47  E-value=24  Score=34.01  Aligned_cols=114  Identities=17%  Similarity=0.152  Sum_probs=67.4

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  163 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N  163 (507)
                      .-..|+++|+|.++++-+..+.|+.++.+......+..+-|.                -.....|+++++|+++++=+..
T Consensus        63 ~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h----------------~~~v~~v~~sp~~~~l~s~s~D  126 (345)
T 3fm0_A           63 TVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGH----------------ENEVKSVAWAPSGNLLATCSRD  126 (345)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCC----------------SSCEEEEEECTTSSEEEEEETT
T ss_pred             cEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCC----------------CCCceEEEEeCCCCEEEEEECC
Confidence            356899999999888888788888887652110011222211                1235689999999988877777


Q ss_pred             CeEEEEcCC-C--cE---EEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 010579          164 MAIRKISDT-G--VT---TIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD  231 (507)
Q Consensus       164 ~rIrk~d~~-G--Vs---tIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~  231 (507)
                      +.|+.++.. +  ..   ++.+.                 -..-..+++ .+++.++++-...+.|+.++....
T Consensus       127 ~~v~iwd~~~~~~~~~~~~~~~h-----------------~~~v~~~~~-~p~~~~l~s~s~d~~i~~w~~~~~  182 (345)
T 3fm0_A          127 KSVWVWEVDEEDEYECVSVLNSH-----------------TQDVKHVVW-HPSQELLASASYDDTVKLYREEED  182 (345)
T ss_dssp             SCEEEEEECTTSCEEEEEEECCC-----------------CSCEEEEEE-CSSSSCEEEEETTSCEEEEEEETT
T ss_pred             CeEEEEECCCCCCeEEEEEecCc-----------------CCCeEEEEE-CCCCCEEEEEeCCCcEEEEEecCC
Confidence            788888732 2  22   22110                 011234553 455555555555667777766544

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=86.46  E-value=17  Score=34.10  Aligned_cols=126  Identities=10%  Similarity=0.060  Sum_probs=72.1

Q ss_pred             CCeeEEEEcCCCcEEEEeCCCCeEEEEeCCC-CCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC-CCCEEEEe
Q 010579           83 MEPFSVAVSPSGELLVLDSENSNIYKISTSL-SPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIAD  160 (507)
Q Consensus        83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g-~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~-dGnIYVAD  160 (507)
                      .....+++++++ |+++ ...+.|+.++... .. .........               .-.....|++++ +|+++++-
T Consensus       151 ~~v~~~~~~~~~-l~~~-~~d~~i~i~d~~~~~~-~~~~~~~~~---------------~~~~i~~i~~~~~~~~~l~~~  212 (342)
T 1yfq_A          151 NKIFTMDTNSSR-LIVG-MNNSQVQWFRLPLCED-DNGTIEESG---------------LKYQIRDVALLPKEQEGYACS  212 (342)
T ss_dssp             CCEEEEEECSSE-EEEE-ESTTEEEEEESSCCTT-CCCEEEECS---------------CSSCEEEEEECSGGGCEEEEE
T ss_pred             CceEEEEecCCc-EEEE-eCCCeEEEEECCcccc-ccceeeecC---------------CCCceeEEEECCCCCCEEEEE
Confidence            467889998886 5555 5567999998763 11 111111110               012467899999 99977777


Q ss_pred             CCCCeEEEEc--CC------C-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 010579          161 TMNMAIRKIS--DT------G-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD  231 (507)
Q Consensus       161 s~N~rIrk~d--~~------G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~  231 (507)
                      +..+.|+.++  ..      . +.++.+.....     .   ..........+++ .+++.++++-..++.|+.+++...
T Consensus       213 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~i~~~~~-s~~~~~l~~~~~dg~i~vwd~~~~  283 (342)
T 1yfq_A          213 SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL-----K---DTNLAYPVNSIEF-SPRHKFLYTAGSDGIISCWNLQTR  283 (342)
T ss_dssp             ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCT-----T---CCSSCCCEEEEEE-CTTTCCEEEEETTSCEEEEETTTT
T ss_pred             ecCCcEEEEEEcCCCcccccccceeeecccccc-----c---ccccceeEEEEEE-cCCCCEEEEecCCceEEEEcCccH
Confidence            7788888754  43      2 34443321100     0   0011123446664 556665556556788888888766


Q ss_pred             ceee
Q 010579          232 DCSD  235 (507)
Q Consensus       232 ~~~~  235 (507)
                      .+..
T Consensus       284 ~~~~  287 (342)
T 1yfq_A          284 KKIK  287 (342)
T ss_dssp             EEEE
T ss_pred             hHhh
Confidence            6543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=86.44  E-value=16  Score=38.56  Aligned_cols=72  Identities=11%  Similarity=0.213  Sum_probs=43.3

Q ss_pred             eeEEEEcCCCc-EEEEeCC-------CCeEEEEeCCC-CCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC
Q 010579           85 PFSVAVSPSGE-LLVLDSE-------NSNIYKISTSL-SPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN  155 (507)
Q Consensus        85 P~gIaVd~dG~-LYVaDs~-------n~rI~ki~~~g-~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn  155 (507)
                      ...++++|||. |+++...       ...|+.++.++ +..+....+....               -..+..+++++||.
T Consensus       190 ~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~---------------~~~~~~~~~spdg~  254 (662)
T 3azo_A          190 VTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP---------------EEAIAQAEWAPDGS  254 (662)
T ss_dssp             ECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET---------------TBCEEEEEECTTSC
T ss_pred             ccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC---------------CceEcceEECCCCe
Confidence            45678999997 5444322       25788888762 1001333333210               12456789999999


Q ss_pred             EEEEeCCCC--eEEEEcC
Q 010579          156 IYIADTMNM--AIRKISD  171 (507)
Q Consensus       156 IYVADs~N~--rIrk~d~  171 (507)
                      ||++...++  +|.+++.
T Consensus       255 l~~~~~~~~~~~l~~~~~  272 (662)
T 3azo_A          255 LIVATDRTGWWNLHRVDP  272 (662)
T ss_dssp             EEEEECTTSSCEEEEECT
T ss_pred             EEEEECCCCCeEEEEEEC
Confidence            777654444  8999985

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=86.35  E-value=11  Score=40.09  Aligned_cols=121  Identities=11%  Similarity=0.148  Sum_probs=76.1

Q ss_pred             CeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccE-EEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeC
Q 010579           84 EPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPK-LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT  161 (507)
Q Consensus        84 ~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~-~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs  161 (507)
                      .-..|++.|+|. ++++-+..+.|+.++..   .++.. ++.|       +         -.....|+++++|.++++=+
T Consensus       149 ~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~---~~~~~~~l~~-------H---------~~~V~~v~fspdg~~las~s  209 (611)
T 1nr0_A          149 AMNSVDFKPSRPFRIISGSDDNTVAIFEGP---PFKFKSTFGE-------H---------TKFVHSVRYNPDGSLFASTG  209 (611)
T ss_dssp             CEEEEEECSSSSCEEEEEETTSCEEEEETT---TBEEEEEECC-------C---------SSCEEEEEECTTSSEEEEEE
T ss_pred             CceEEEECCCCCeEEEEEeCCCeEEEEECC---CCeEeeeecc-------c---------cCceEEEEECCCCCEEEEEE
Confidence            457889999875 57777778889999864   12222 2211       1         12456899999999888888


Q ss_pred             CCCeEEEEcC-CC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCcee
Q 010579          162 MNMAIRKISD-TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS  234 (507)
Q Consensus       162 ~N~rIrk~d~-~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~  234 (507)
                      ..+.|+.++. .|  +.++..... .         ....-....+|++ .+++.++++-...+.|+..++....|.
T Consensus       210 ~D~~i~lwd~~~g~~~~~~~~~~~-~---------~~~h~~~V~~v~~-spdg~~l~s~s~D~~v~lWd~~~~~~~  274 (611)
T 1nr0_A          210 GDGTIVLYNGVDGTKTGVFEDDSL-K---------NVAHSGSVFGLTW-SPDGTKIASASADKTIKIWNVATLKVE  274 (611)
T ss_dssp             TTSCEEEEETTTCCEEEECBCTTS-S---------SCSSSSCEEEEEE-CTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             CCCcEEEEECCCCcEeeeeccccc-c---------ccccCCCEEEEEE-CCCCCEEEEEeCCCeEEEEeCCCCcee
Confidence            8888999983 44  233211000 0         0001123456664 567777777777788888888766554

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=86.25  E-value=10  Score=38.92  Aligned_cols=119  Identities=8%  Similarity=0.048  Sum_probs=69.3

Q ss_pred             CeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccE-EEecCCCCccccCCCCcccccCCCcceEEEcCC-CCEEEEe
Q 010579           84 EPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPK-LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDR-GNIYIAD  160 (507)
Q Consensus        84 ~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~-~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~d-GnIYVAD  160 (507)
                      ....+++.++|. ++++-...+.|+.++...   ++.. .+.+..       +.      -.....++++++ |+++++-
T Consensus       162 ~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~---~~~~~~~~~~~-------~~------~~~v~~~~~~~~~~~~l~~~  225 (615)
T 1pgu_A          162 RINACHLKQSRPMRSMTVGDDGSVVFYQGPP---FKFSASDRTHH-------KQ------GSFVRDVEFSPDSGEFVITV  225 (615)
T ss_dssp             CEEEEEECSSSSCEEEEEETTTEEEEEETTT---BEEEEEECSSS-------CT------TCCEEEEEECSTTCCEEEEE
T ss_pred             cEEEEEECCCCCcEEEEEeCCCcEEEEeCCC---cceeeeecccC-------CC------CceEEEEEECCCCCCEEEEE
Confidence            567899999886 777777889999998752   3322 221110       00      013568999999 9977776


Q ss_pred             CCCCeEEEEcC-CC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCce
Q 010579          161 TMNMAIRKISD-TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  233 (507)
Q Consensus       161 s~N~rIrk~d~-~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~  233 (507)
                      +.++.|+.++. .+  +.++.....    +         .-....++++ . ++.++++-..++.|+.+++....+
T Consensus       226 ~~dg~i~vwd~~~~~~~~~~~~~~~----~---------~~~~v~~~~~-~-~~~~l~~~~~d~~i~~wd~~~~~~  286 (615)
T 1pgu_A          226 GSDRKISCFDGKSGEFLKYIEDDQE----P---------VQGGIFALSW-L-DSQKFATVGADATIRVWDVTTSKC  286 (615)
T ss_dssp             ETTCCEEEEETTTCCEEEECCBTTB----C---------CCSCEEEEEE-S-SSSEEEEEETTSEEEEEETTTTEE
T ss_pred             eCCCeEEEEECCCCCEeEEeccccc----c---------cCCceEEEEE-c-CCCEEEEEcCCCcEEEEECCCCcE
Confidence            67888999994 34  233311000    0         0012234553 3 555555555556677777665444

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=86.10  E-value=13  Score=35.81  Aligned_cols=116  Identities=10%  Similarity=0.001  Sum_probs=67.2

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc--EEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP--KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT  161 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i--~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs  161 (507)
                      ....++++|+|.++++-...+.|+.++...   +..  ..+.+      ++         -.....|+++++|.++++-.
T Consensus       172 ~i~~~~~~pdg~~lasg~~dg~i~iwd~~~---~~~~~~~~~~------~h---------~~~v~~l~fs~~g~~l~s~~  233 (343)
T 3lrv_A          172 EYSSGVLHKDSLLLALYSPDGILDVYNLSS---PDQASSRFPV------DE---------EAKIKEVKFADNGYWMVVEC  233 (343)
T ss_dssp             CCCEEEECTTSCEEEEECTTSCEEEEESSC---TTSCCEECCC------CT---------TSCEEEEEECTTSSEEEEEE
T ss_pred             ceEEEEECCCCCEEEEEcCCCEEEEEECCC---CCCCccEEec------cC---------CCCEEEEEEeCCCCEEEEEe
Confidence            356889999998888877788999998762   222  12211      01         12456899999998666544


Q ss_pred             CCCeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCC-CCeEEEEECCCC
Q 010579          162 MNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG-NQAIREIQLHDD  231 (507)
Q Consensus       162 ~N~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~g-n~rIr~I~l~~~  231 (507)
                      .+ .|+.+|...   +.++..-.        +   ....... ..+++ +++|.++++-.+ ++.|+.++.+..
T Consensus       234 ~~-~v~iwd~~~~~~~~~~~~~~--------~---~~~~~~~-~~~~~-~~~g~~l~~~s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          234 DQ-TVVCFDLRKDVGTLAYPTYT--------I---PEFKTGT-VTYDI-DDSGKNMIAYSNESNSLTIYKFDKK  293 (343)
T ss_dssp             SS-BEEEEETTSSTTCBSSCCCB--------C--------CC-EEEEE-CTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             CC-eEEEEEcCCCCcceeecccc--------c---ccccccc-eEEEE-CCCCCEEEEecCCCCcEEEEEEccc
Confidence            44 899998443   22221100        0   0001111 34664 666666555443 778888876543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=85.88  E-value=12  Score=36.07  Aligned_cols=72  Identities=10%  Similarity=0.094  Sum_probs=41.2

Q ss_pred             eeEEEEcC-CCc-E-EEEeCC----CCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-E
Q 010579           85 PFSVAVSP-SGE-L-LVLDSE----NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-I  156 (507)
Q Consensus        85 P~gIaVd~-dG~-L-YVaDs~----n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-I  156 (507)
                      ...++++| ||. | |+++..    ..+|+.++.++   +....+....       .+       .....+++++||+ |
T Consensus       190 ~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~---~~~~~l~~~~-------~~-------~~~~~~~~spdg~~l  252 (388)
T 3pe7_A          190 LGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDG---TNMRKVKTHA-------EG-------ESCTHEFWVPDGSAL  252 (388)
T ss_dssp             EEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTS---CCCEESCCCC-------TT-------EEEEEEEECTTSSCE
T ss_pred             ccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCC---CceEEeeeCC-------CC-------cccccceECCCCCEE
Confidence            45788999 886 3 444432    45899998763   2333332211       00       0123568999997 5


Q ss_pred             -EEEeCCCC---eEEEEcCCC
Q 010579          157 -YIADTMNM---AIRKISDTG  173 (507)
Q Consensus       157 -YVADs~N~---rIrk~d~~G  173 (507)
                       |+++....   .|++++..+
T Consensus       253 ~~~~~~~~~~~~~l~~~d~~~  273 (388)
T 3pe7_A          253 VYVSYLKGSPDRFIYSADPET  273 (388)
T ss_dssp             EEEEEETTCCCEEEEEECTTT
T ss_pred             EEEecCCCCCcceEEEEecCC
Confidence             55654332   399999543

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=85.64  E-value=41  Score=35.90  Aligned_cols=119  Identities=15%  Similarity=0.091  Sum_probs=74.5

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCC--CEEEEeC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRG--NIYIADT  161 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dG--nIYVADs  161 (507)
                      .-..|+++++|.++++-+..+.|+.++..+   .....+....   .++         -..-..+++++++  .++++-+
T Consensus       474 ~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~---~~~~~~~~~~---~~h---------~~~v~~~~~~~~~~~~~l~s~s  538 (694)
T 3dm0_A          474 DVLSVAFSLDNRQIVSASRDRTIKLWNTLG---ECKYTISEGG---EGH---------RDWVSCVRFSPNTLQPTIVSAS  538 (694)
T ss_dssp             CEEEEEECTTSSCEEEEETTSCEEEECTTS---CEEEEECSST---TSC---------SSCEEEEEECSCSSSCEEEEEE
T ss_pred             CEEEEEEeCCCCEEEEEeCCCEEEEEECCC---CcceeeccCC---CCC---------CCcEEEEEEeCCCCcceEEEEe
Confidence            456788999988888878888999998652   1111221111   111         1234578888876  4666666


Q ss_pred             CCCeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee
Q 010579          162 MNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD  235 (507)
Q Consensus       162 ~N~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~  235 (507)
                      ..+.|+.+|...   +.++.+-.                 .....|+ ..++++++++-...+.|+.+++....+..
T Consensus       539 ~d~~v~vwd~~~~~~~~~~~~h~-----------------~~v~~v~-~spdg~~l~sg~~Dg~i~iwd~~~~~~~~  597 (694)
T 3dm0_A          539 WDKTVKVWNLSNCKLRSTLAGHT-----------------GYVSTVA-VSPDGSLCASGGKDGVVLLWDLAEGKKLY  597 (694)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCS-----------------SCEEEEE-ECTTSSEEEEEETTSBCEEEETTTTEEEE
T ss_pred             CCCeEEEEECCCCcEEEEEcCCC-----------------CCEEEEE-EeCCCCEEEEEeCCCeEEEEECCCCceEE
Confidence            677888888443   33332210                 1234566 46677777777778889988888776654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=85.46  E-value=12  Score=34.33  Aligned_cols=110  Identities=15%  Similarity=0.094  Sum_probs=66.0

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccE-EEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPK-LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~-~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      ....+++.++|. +++-...+.|+.++...   +... .+.+.                -.....|+++++|.|+.+ ..
T Consensus       186 ~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~---~~~~~~~~~~----------------~~~i~~~~~~~~~~l~~~-~~  244 (313)
T 3odt_A          186 VVRHLAVVDDGH-FISCSNDGLIKLVDMHT---GDVLRTYEGH----------------ESFVYCIKLLPNGDIVSC-GE  244 (313)
T ss_dssp             CEEEEEEEETTE-EEEEETTSEEEEEETTT---CCEEEEEECC----------------SSCEEEEEECTTSCEEEE-ET
T ss_pred             cEEEEEEcCCCe-EEEccCCCeEEEEECCc---hhhhhhhhcC----------------CceEEEEEEecCCCEEEE-ec
Confidence            466788888877 44445567888888752   2222 22111                124568999999975555 45


Q ss_pred             CCeEEEEcC-CC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCce
Q 010579          163 NMAIRKISD-TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  233 (507)
Q Consensus       163 N~rIrk~d~-~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~  233 (507)
                      .+.|+.++. .+  +.++.+..                 .....+++ .+++.++++ ...+.|+.+++....+
T Consensus       245 dg~v~iwd~~~~~~~~~~~~~~-----------------~~i~~~~~-~~~~~~~~~-~~dg~i~iw~~~~~~~  299 (313)
T 3odt_A          245 DRTVRIWSKENGSLKQVITLPA-----------------ISIWSVDC-MSNGDIIVG-SSDNLVRIFSQEKSRW  299 (313)
T ss_dssp             TSEEEEECTTTCCEEEEEECSS-----------------SCEEEEEE-CTTSCEEEE-ETTSCEEEEESCGGGC
T ss_pred             CCEEEEEECCCCceeEEEeccC-----------------ceEEEEEE-ccCCCEEEE-eCCCcEEEEeCCCCce
Confidence            778999994 34  34442210                 12345664 566665554 4567888888876544

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=85.32  E-value=30  Score=34.02  Aligned_cols=133  Identities=11%  Similarity=0.041  Sum_probs=75.8

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEc----CCCCEEEE
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVD----DRGNIYIA  159 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd----~dGnIYVA  159 (507)
                      ....++++++|.++++-+..+.|+.++...   +.........     + .        ..-..|++.    ++|.++++
T Consensus       216 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~-----~-~--------~~v~~~~~~~~~s~~~~~l~s  278 (437)
T 3gre_A          216 AVSSICIDEECCVLILGTTRGIIDIWDIRF---NVLIRSWSFG-----D-H--------APITHVEVCQFYGKNSVIVVG  278 (437)
T ss_dssp             CEEEEEECTTSCEEEEEETTSCEEEEETTT---TEEEEEEBCT-----T-C--------EEEEEEEECTTTCTTEEEEEE
T ss_pred             ceEEEEECCCCCEEEEEcCCCeEEEEEcCC---ccEEEEEecC-----C-C--------CceEEEEeccccCCCccEEEE
Confidence            577899999999888888889999999862   3322211100     0 0        012355333    46767777


Q ss_pred             eCCCCeEEEEcCC-C--cEEEecCcccCC---CCCCCCCccCccC------CCCceEEEEcCCCeEEEEeCCCCeEEEEE
Q 010579          160 DTMNMAIRKISDT-G--VTTIAGGKWSRG---VGHVDGPSEDAKF------SNDFDVVYVGSSCSLLVIDRGNQAIREIQ  227 (507)
Q Consensus       160 Ds~N~rIrk~d~~-G--VstIaGG~~g~~---~G~~dg~~~~a~f------~~P~gIa~vd~~G~LyVaD~gn~rIr~I~  227 (507)
                      -+.++.|+.+|.. +  +.++.+......   .........+..+      ..-..+++.  ++.++++-...+.|+.++
T Consensus       279 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~--~~~~l~s~~~d~~i~~wd  356 (437)
T 3gre_A          279 GSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS--NDKILLTDEATSSIVMFS  356 (437)
T ss_dssp             ESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE--TTEEEEEEGGGTEEEEEE
T ss_pred             EcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC--CceEEEecCCCCeEEEEE
Confidence            7777788888853 4  444443211000   0000000000111      124567754  667788888889999999


Q ss_pred             CCCCceee
Q 010579          228 LHDDDCSD  235 (507)
Q Consensus       228 l~~~~~~~  235 (507)
                      +....+..
T Consensus       357 ~~~~~~~~  364 (437)
T 3gre_A          357 LNELSSSK  364 (437)
T ss_dssp             TTCGGGCE
T ss_pred             CCCcccce
Confidence            88766543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=85.20  E-value=25  Score=33.10  Aligned_cols=119  Identities=11%  Similarity=0.099  Sum_probs=70.3

Q ss_pred             CCeeEEEEcCC--CcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC--------
Q 010579           83 MEPFSVAVSPS--GELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD--------  152 (507)
Q Consensus        83 ~~P~gIaVd~d--G~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~--------  152 (507)
                      .....+++.++  |.++++-...+.|+.++...........+.+.                -.....+++++        
T Consensus       102 ~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~~~~~  165 (379)
T 3jrp_A          102 ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH----------------AIGVNSASWAPATIEEDGE  165 (379)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECC----------------TTCEEEEEECCCC------
T ss_pred             cceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCC----------------CCceEEEEEcCcccccccc
Confidence            35678899998  88888777888999998763211111111111                12345677777        


Q ss_pred             -----CCCEEEEeCCCCeEEEEcCC-C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCC---CeEEEEeCCCC
Q 010579          153 -----RGNIYIADTMNMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSS---CSLLVIDRGNQ  221 (507)
Q Consensus       153 -----dGnIYVADs~N~rIrk~d~~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~---G~LyVaD~gn~  221 (507)
                           +++++++-+.++.|+.++.. +  ...+.....    +         .-....++++ .++   +.++++-...+
T Consensus       166 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~---------h~~~v~~~~~-sp~~~~~~~l~s~~~dg  231 (379)
T 3jrp_A          166 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE----G---------HSDWVRDVAW-SPTVLLRSYLASVSQDR  231 (379)
T ss_dssp             ----CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEEC----C---------CSSCEEEEEE-CCCCSSSEEEEEEETTS
T ss_pred             ccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEe----c---------ccCcEeEEEE-CCCCCCCCeEEEEeCCC
Confidence                 68877777777788888732 2  111110000    0         0112346664 455   67777777778


Q ss_pred             eEEEEECCCC
Q 010579          222 AIREIQLHDD  231 (507)
Q Consensus       222 rIr~I~l~~~  231 (507)
                      .|+.+++...
T Consensus       232 ~i~iwd~~~~  241 (379)
T 3jrp_A          232 TCIIWTQDNE  241 (379)
T ss_dssp             CEEEEEESST
T ss_pred             EEEEEeCCCC
Confidence            8888887764

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=84.94  E-value=13  Score=39.56  Aligned_cols=64  Identities=8%  Similarity=0.129  Sum_probs=41.0

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs~  162 (507)
                      .+..++++||+.|+++-  ++.|+.++..+   +....+....                .....++++|||+ |+++  .
T Consensus        83 ~v~~~~~spd~~~~~~~--~~~i~~~d~~~---~~~~~l~~~~----------------~~~~~~~~SpdG~~la~~--~  139 (706)
T 2z3z_A           83 PSFRTLDAGRGLVVLFT--QGGLVGFDMLA---RKVTYLFDTN----------------EETASLDFSPVGDRVAYV--R  139 (706)
T ss_dssp             CCEEEEETTTTEEEEEE--TTEEEEEETTT---TEEEEEECCT----------------TCCTTCEECTTSSEEEEE--E
T ss_pred             CceeEEECCCCeEEEEE--CCEEEEEECCC---CceEEccCCc----------------ccccCCcCCCCCCEEEEE--E
Confidence            57899999996666663  38999999863   4444333221                1244678888887 3333  3


Q ss_pred             CCeEEEEc
Q 010579          163 NMAIRKIS  170 (507)
Q Consensus       163 N~rIrk~d  170 (507)
                      ++.|++++
T Consensus       140 ~~~i~v~~  147 (706)
T 2z3z_A          140 NHNLYIAR  147 (706)
T ss_dssp             TTEEEEEE
T ss_pred             CCeEEEEe
Confidence            46677777

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=84.58  E-value=7.7  Score=39.86  Aligned_cols=111  Identities=12%  Similarity=0.186  Sum_probs=70.7

Q ss_pred             CCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC----------
Q 010579           83 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD----------  152 (507)
Q Consensus        83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~----------  152 (507)
                      .....++++++|.++++-...+.|+.++...   +......      .+        ..-.....+++++          
T Consensus       489 ~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~---~~~~~~~------~~--------~h~~~v~~~~~sp~~~~~~~~~~  551 (615)
T 1pgu_A          489 AKPSYISISPSETYIAAGDVMGKILLYDLQS---REVKTSR------WA--------FRTSKINAISWKPAEKGANEEEI  551 (615)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTT---TEEEECC------SC--------CCSSCEEEEEECCCC------CC
T ss_pred             CceEEEEECCCCCEEEEcCCCCeEEEeeCCC---CcceeEe------ec--------CCCCceeEEEEcCcccccccccc
Confidence            4678899999999888888889999999862   3221110      01        0123467899999          


Q ss_pred             CCCEEEEeCCCCeEEEEcCCC----cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEEC
Q 010579          153 RGNIYIADTMNMAIRKISDTG----VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQL  228 (507)
Q Consensus       153 dGnIYVADs~N~rIrk~d~~G----VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l  228 (507)
                      +|.++++=+..+.|+.++...    +.++.+        +         -....+|++. +++. +++-...+.|+.+++
T Consensus       552 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--------h---------~~~v~~l~~s-~~~~-l~s~~~d~~v~iw~~  612 (615)
T 1pgu_A          552 EEDLVATGSLDTNIFIYSVKRPMKIIKALNA--------H---------KDGVNNLLWE-TPST-LVSSGADACIKRWNV  612 (615)
T ss_dssp             SCCEEEEEETTSCEEEEESSCTTCCEEETTS--------S---------TTCEEEEEEE-ETTE-EEEEETTSCEEEEEE
T ss_pred             CCCEEEEEcCCCcEEEEECCCCceechhhhc--------C---------ccceEEEEEc-CCCC-eEEecCCceEEEEee
Confidence            899888777778899888432    222211        0         1134567764 4555 555555677877776


Q ss_pred             C
Q 010579          229 H  229 (507)
Q Consensus       229 ~  229 (507)
                      +
T Consensus       613 ~  613 (615)
T 1pgu_A          613 V  613 (615)
T ss_dssp             C
T ss_pred             e
Confidence            5

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=84.30  E-value=7.7  Score=36.56  Aligned_cols=110  Identities=12%  Similarity=0.033  Sum_probs=65.2

Q ss_pred             EcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC---CCCEEEEeCCCCeE
Q 010579           90 VSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD---RGNIYIADTMNMAI  166 (507)
Q Consensus        90 Vd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~---dGnIYVADs~N~rI  166 (507)
                      ++++|.++++-..++.|+.++...   +......+.                -.....+++++   +|+++++-+.++.|
T Consensus       176 ~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~----------------~~~v~~~~~~~~~~~~~~l~~~~~dg~i  236 (357)
T 3i2n_A          176 YNQEERVVCAGYDNGDIKLFDLRN---MALRWETNI----------------KNGVCSLEFDRKDISMNKLVATSLEGKF  236 (357)
T ss_dssp             CC-CCCEEEEEETTSEEEEEETTT---TEEEEEEEC----------------SSCEEEEEESCSSSSCCEEEEEESTTEE
T ss_pred             cCCCCCEEEEEccCCeEEEEECcc---CceeeecCC----------------CCceEEEEcCCCCCCCCEEEEECCCCeE
Confidence            567888888888889999999862   333222211                12456899998   88877776778889


Q ss_pred             EEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCe-EEEEeCCCCeEEEEECCCC
Q 010579          167 RKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCS-LLVIDRGNQAIREIQLHDD  231 (507)
Q Consensus       167 rk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~-LyVaD~gn~rIr~I~l~~~  231 (507)
                      +.++...   +..+.....            ...-.....+++ .+++. ++++-...+.|+.+++...
T Consensus       237 ~i~d~~~~~~~~~~~~~~~------------~~~~~~v~~~~~-~~~~~~~l~~~~~dg~i~iwd~~~~  292 (357)
T 3i2n_A          237 HVFDMRTQHPTKGFASVSE------------KAHKSTVWQVRH-LPQNRELFLTAGGAGGLHLWKYEYP  292 (357)
T ss_dssp             EEEEEEEEETTTEEEEEEE------------ECCSSCEEEEEE-ETTEEEEEEEEETTSEEEEEEEECC
T ss_pred             EEEeCcCCCcccceeeecc------------CCCcCCEEEEEE-CCCCCcEEEEEeCCCcEEEeecCCC
Confidence            9888332   222210000            000112345665 44555 6666666778888876643

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=84.30  E-value=4.1  Score=39.34  Aligned_cols=114  Identities=9%  Similarity=-0.003  Sum_probs=66.4

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCC-CCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSP-YSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~-~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      .-..|+++++|+++++-+..+.|+.++..... ......+.+.                -.....++++++|+++++-+.
T Consensus        57 ~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~l~~~~~  120 (377)
T 3dwl_C           57 IVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRL----------------NRAATFVRWSPNEDKFAVGSG  120 (377)
T ss_dssp             CEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCC----------------SSCEEEEECCTTSSCCEEEES
T ss_pred             eEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeccc----------------CCceEEEEECCCCCEEEEEec
Confidence            45689999999888877777889999876211 0011111111                124568899999986666666


Q ss_pred             CCeEEEEcCCC------cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCC
Q 010579          163 NMAIRKISDTG------VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  230 (507)
Q Consensus       163 N~rIrk~d~~G------VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~  230 (507)
                      .+.|+.++...      +..+.+..                -....+|++ .+++.++++-...+.|+.+++..
T Consensus       121 d~~i~iwd~~~~~~~~~~~~~~~~h----------------~~~v~~~~~-~~~~~~l~~~~~d~~i~iwd~~~  177 (377)
T 3dwl_C          121 ARVISVCYFEQENDWWVSKHLKRPL----------------RSTILSLDW-HPNNVLLAAGCADRKAYVLSAYV  177 (377)
T ss_dssp             SSCEEECCC-----CCCCEEECSSC----------------CSCEEEEEE-CTTSSEEEEEESSSCEEEEEECC
T ss_pred             CCeEEEEEECCcccceeeeEeeccc----------------CCCeEEEEE-cCCCCEEEEEeCCCEEEEEEEEe
Confidence            77788887433      23332100                113456664 55666666666678888888753

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=83.98  E-value=26  Score=34.78  Aligned_cols=66  Identities=18%  Similarity=0.235  Sum_probs=44.7

Q ss_pred             EEcCCCcEEEEeCCCCeEEEEeCCCCCCCccE-EEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCCeEE
Q 010579           89 AVSPSGELLVLDSENSNIYKISTSLSPYSRPK-LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIR  167 (507)
Q Consensus        89 aVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~-~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~rIr  167 (507)
                      +++++|+++++-...+.|+.++...   +... .+.+.                -.....++++++|+.+++-+..+.|+
T Consensus       275 ~~~~~~~~l~~~~~d~~i~vwd~~~---~~~~~~~~~~----------------~~~v~~~~~~~~~~~l~sg~~dg~i~  335 (464)
T 3v7d_B          275 TVSGHGNIVVSGSYDNTLIVWDVAQ---MKCLYILSGH----------------TDRIYSTIYDHERKRCISASMDTTIR  335 (464)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTT---TEEEEEECCC----------------SSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCC---CcEEEEecCC----------------CCCEEEEEEcCCCCEEEEEeCCCcEE
Confidence            4456677777777778899998752   3222 22111                12456899999999888877788899


Q ss_pred             EEcC-CC
Q 010579          168 KISD-TG  173 (507)
Q Consensus       168 k~d~-~G  173 (507)
                      .+|. .+
T Consensus       336 vwd~~~~  342 (464)
T 3v7d_B          336 IWDLENG  342 (464)
T ss_dssp             EEETTTT
T ss_pred             EEECCCC
Confidence            9994 44

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=83.70  E-value=57  Score=37.22  Aligned_cols=111  Identities=8%  Similarity=0.064  Sum_probs=66.6

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCccccCCCCcccccCCCcceEEEcC--CCCEEEEe
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD--RGNIYIAD  160 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~--dGnIYVAD  160 (507)
                      .-..++++++|.++++-+..+.|+.++...   +.. ..+.+.                -.....+++.+  ++.++++-
T Consensus       659 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~---~~~~~~~~~~----------------~~~v~~~~~~~~~~~~~l~sg  719 (1249)
T 3sfz_A          659 EVLCCAFSSDDSYIATCSADKKVKIWDSAT---GKLVHTYDEH----------------SEQVNCCHFTNKSNHLLLATG  719 (1249)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTT---CCEEEEEECC----------------SSCEEEEEECSSSSCCEEEEE
T ss_pred             CEEEEEEecCCCEEEEEeCCCeEEEEECCC---CceEEEEcCC----------------CCcEEEEEEecCCCceEEEEE
Confidence            567899999999888888889999999863   332 222221                12345677877  44466666


Q ss_pred             CCCCeEEEEcCC-C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 010579          161 TMNMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD  231 (507)
Q Consensus       161 s~N~rIrk~d~~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~  231 (507)
                      +.++.|+.+|.. +  +.++.+..                 ....++++ .+++.++++-...+.|+.+++...
T Consensus       720 ~~d~~v~vwd~~~~~~~~~~~~h~-----------------~~v~~~~~-sp~~~~l~s~s~dg~v~vwd~~~~  775 (1249)
T 3sfz_A          720 SNDFFLKLWDLNQKECRNTMFGHT-----------------NSVNHCRF-SPDDELLASCSADGTLRLWDVRSA  775 (1249)
T ss_dssp             ETTSCEEEEETTSSSEEEEECCCS-----------------SCEEEEEE-CSSTTEEEEEESSSEEEEEEGGGT
T ss_pred             eCCCeEEEEECCCcchhheecCCC-----------------CCEEEEEE-ecCCCEEEEEECCCeEEEEeCCCC
Confidence            667788888843 3  33442211                 12234443 445555555555566666665543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=82.66  E-value=35  Score=32.70  Aligned_cols=71  Identities=11%  Similarity=0.030  Sum_probs=50.8

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCc-cEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSR-PKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~-i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      .-..|+++++|.++++-+..+.|+.++...   ++ +..+.+..                .....|+++++|+.+++=+.
T Consensus        78 ~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~---~~~~~~~~~h~----------------~~v~~v~~sp~~~~l~s~~~  138 (343)
T 2xzm_R           78 FVSDLALSQENCFAISSSWDKTLRLWDLRT---GTTYKRFVGHQ----------------SEVYSVAFSPDNRQILSAGA  138 (343)
T ss_dssp             CEEEEEECSSTTEEEEEETTSEEEEEETTS---SCEEEEEECCC----------------SCEEEEEECSSTTEEEEEET
T ss_pred             ceEEEEECCCCCEEEEEcCCCcEEEEECCC---CcEEEEEcCCC----------------CcEEEEEECCCCCEEEEEcC
Confidence            346889999999988888889999999762   32 22333221                23467999999987777666


Q ss_pred             CCeEEEEcCCC
Q 010579          163 NMAIRKISDTG  173 (507)
Q Consensus       163 N~rIrk~d~~G  173 (507)
                      .+.|+.++..+
T Consensus       139 d~~i~~wd~~~  149 (343)
T 2xzm_R          139 EREIKLWNILG  149 (343)
T ss_dssp             TSCEEEEESSS
T ss_pred             CCEEEEEeccC
Confidence            77888888544

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=82.28  E-value=32  Score=31.99  Aligned_cols=74  Identities=14%  Similarity=0.232  Sum_probs=49.5

Q ss_pred             CeeEEEEcCC-CcEEEEeCCCCeEEEEeCCCCCCC--cc-EEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEE
Q 010579           84 EPFSVAVSPS-GELLVLDSENSNIYKISTSLSPYS--RP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIA  159 (507)
Q Consensus        84 ~P~gIaVd~d-G~LYVaDs~n~rI~ki~~~g~~~g--~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVA  159 (507)
                      .=..|+++|+ ++++++-+..+.|+.++.......  .. .++.       |+         -.....++++++|+++++
T Consensus        40 ~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~-------~h---------~~~V~~~~~s~dg~~l~s  103 (340)
T 4aow_A           40 WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR-------GH---------SHFVSDVVISSDGQFALS  103 (340)
T ss_dssp             CEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEEC-------CC---------SSCEEEEEECTTSSEEEE
T ss_pred             CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEe-------CC---------CCCEEEEEECCCCCEEEE
Confidence            3568999986 688888877888999886522111  00 1111       11         124568999999998877


Q ss_pred             eCCCCeEEEEcCCC
Q 010579          160 DTMNMAIRKISDTG  173 (507)
Q Consensus       160 Ds~N~rIrk~d~~G  173 (507)
                      =.....|+..+...
T Consensus       104 ~~~d~~i~~~~~~~  117 (340)
T 4aow_A          104 GSWDGTLRLWDLTT  117 (340)
T ss_dssp             EETTSEEEEEETTT
T ss_pred             EcccccceEEeecc
Confidence            77778888888544

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=81.27  E-value=31  Score=32.22  Aligned_cols=74  Identities=9%  Similarity=-0.042  Sum_probs=47.1

Q ss_pred             CeeEEEEcC---CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEE
Q 010579           84 EPFSVAVSP---SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIA  159 (507)
Q Consensus        84 ~P~gIaVd~---dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVA  159 (507)
                      ....+++++   +|+++++-...+.|+.++.....  ....+.-.  ...+         .-.....++++++|. ++++
T Consensus       211 ~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~--~~~~---------~~~~v~~~~~~~~~~~~l~~  277 (357)
T 3i2n_A          211 GVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQH--PTKGFASV--SEKA---------HKSTVWQVRHLPQNRELFLT  277 (357)
T ss_dssp             CEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEE--TTTEEEEE--EEEC---------CSSCEEEEEEETTEEEEEEE
T ss_pred             ceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCC--cccceeee--ccCC---------CcCCEEEEEECCCCCcEEEE
Confidence            567899998   88877777778899999864211  01111000  0001         123456899999988 6776


Q ss_pred             eCCCCeEEEEc
Q 010579          160 DTMNMAIRKIS  170 (507)
Q Consensus       160 Ds~N~rIrk~d  170 (507)
                      -..++.|+.++
T Consensus       278 ~~~dg~i~iwd  288 (357)
T 3i2n_A          278 AGGAGGLHLWK  288 (357)
T ss_dssp             EETTSEEEEEE
T ss_pred             EeCCCcEEEee
Confidence            66677888887

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=81.21  E-value=23  Score=33.86  Aligned_cols=112  Identities=9%  Similarity=0.044  Sum_probs=64.6

Q ss_pred             CeeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC---CCCEEEE
Q 010579           84 EPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD---RGNIYIA  159 (507)
Q Consensus        84 ~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~---dGnIYVA  159 (507)
                      ....|++.+ ++.++++-...+.|+.++...   +.........                .....+++.+   ++.++++
T Consensus       101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~  161 (408)
T 4a11_B          101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNT---LQTADVFNFE----------------ETVYSHHMSPVSTKHCLVAV  161 (408)
T ss_dssp             CEEEEEECTTCTTCEEEEETTSEEEEEETTT---TEEEEEEECS----------------SCEEEEEECSSCSSCCEEEE
T ss_pred             cEEEEEEccCCCcEEEEEeCCCeEEEeeCCC---CccceeccCC----------------CceeeeEeecCCCCCcEEEE
Confidence            567899999 677777777788999999862   3332222111                1234556655   4446666


Q ss_pred             eCCCCeEEEEcCC-C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 010579          160 DTMNMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD  231 (507)
Q Consensus       160 Ds~N~rIrk~d~~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~  231 (507)
                      -..++.|+.++.. +  +.++.+..                 ....++++.+....|+++-..++.|+.+++...
T Consensus       162 ~~~~~~v~~~d~~~~~~~~~~~~~~-----------------~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~  219 (408)
T 4a11_B          162 GTRGPKVQLCDLKSGSCSHILQGHR-----------------QEILAVSWSPRYDYILATASADSRVKLWDVRRA  219 (408)
T ss_dssp             EESSSSEEEEESSSSCCCEEECCCC-----------------SCEEEEEECSSCTTEEEEEETTSCEEEEETTCS
T ss_pred             EcCCCeEEEEeCCCcceeeeecCCC-----------------CcEEEEEECCCCCcEEEEEcCCCcEEEEECCCC
Confidence            6667778888843 2  34442210                 122355543333335656556677887777553

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=81.19  E-value=27  Score=34.17  Aligned_cols=83  Identities=10%  Similarity=0.040  Sum_probs=48.1

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCC------Cc---cEEEecCCCCccccCCCCccccc-CCCcceEEEcCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPY------SR---PKLVAGSPEGYYGHVDGRPRGAR-MNHPKGLAVDDR  153 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~------g~---i~~vaG~~~G~~G~~dG~~~~a~-fn~P~GIaVd~d  153 (507)
                      .-..|+++++|.++++-...+.|+.++......      +.   ...+.|... ....    ..... -.....|++.++
T Consensus        30 ~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~-~~~~----~~~~~~~~~V~~l~~~~~  104 (447)
T 3dw8_B           30 IISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEP-EFDY----LKSLEIEEKINKIRWLPQ  104 (447)
T ss_dssp             SEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCC-EEEG----GGTEEECCCCCEEEECCC
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccc-cccc----cccccccCceEEEEEcCC
Confidence            456889999999888877889999998763210      00   122222110 0000    00000 023568999998


Q ss_pred             C--CEEEEeCCCCeEEEEcC
Q 010579          154 G--NIYIADTMNMAIRKISD  171 (507)
Q Consensus       154 G--nIYVADs~N~rIrk~d~  171 (507)
                      +  .++++-+..+.|+.++.
T Consensus       105 ~~~~~l~s~s~d~~i~iw~~  124 (447)
T 3dw8_B          105 KNAAQFLLSTNDKTIKLWKI  124 (447)
T ss_dssp             CSSSEEEEEECSSCEEEEEE
T ss_pred             CCcceEEEeCCCCeEEEEec
Confidence            7  66666667778888773

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=80.73  E-value=15  Score=35.39  Aligned_cols=113  Identities=20%  Similarity=0.195  Sum_probs=67.4

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCC----CCcc-EEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEE
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSP----YSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYI  158 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~----~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYV  158 (507)
                      .-..|+++|+|.++++-+..+.|+.++.....    .... .++.|       +         -..-..|+++++|++++
T Consensus        60 ~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~-------h---------~~~V~~v~~sp~g~~la  123 (330)
T 2hes_X           60 AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEG-------H---------ENEVKGVAWSNDGYYLA  123 (330)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC--------------------CEEEEEECTTSCEEE
T ss_pred             CEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcC-------C---------CCcEEEEEECCCCCEEE
Confidence            35689999999988888888999999874211    0111 11111       1         12356899999999888


Q ss_pred             EeCCCCeEEEEcCC--C-----cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCC
Q 010579          159 ADTMNMAIRKISDT--G-----VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  230 (507)
Q Consensus       159 ADs~N~rIrk~d~~--G-----VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~  230 (507)
                      +=+..+.|+.++..  +     +.++.+-                 -.....|++ .+++.++++-...+.|+..+...
T Consensus       124 s~s~D~~v~iwd~~~~~~~~~~~~~~~~h-----------------~~~v~~v~~-~p~~~~l~s~s~D~~i~iW~~~~  184 (330)
T 2hes_X          124 TCSRDKSVWIWETDESGEEYECISVLQEH-----------------SQDVKHVIW-HPSEALLASSSYDDTVRIWKDYD  184 (330)
T ss_dssp             EEETTSCEEEEECCTTCCCCEEEEEECCC-----------------SSCEEEEEE-CSSSSEEEEEETTSCEEEEEEET
T ss_pred             EEeCCCEEEEEeccCCCCCeEEEEEeccC-----------------CCceEEEEE-CCCCCEEEEEcCCCeEEEEECCC
Confidence            77777888888852  2     1222110                 012235554 45666666666667777776544

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=80.68  E-value=45  Score=32.69  Aligned_cols=66  Identities=18%  Similarity=0.195  Sum_probs=45.7

Q ss_pred             EcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCCeEEE
Q 010579           90 VSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRK  168 (507)
Q Consensus        90 Vd~dG~LYVaDs~n~rI~ki~~~g~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~rIrk  168 (507)
                      +.++|.++++-...+.|+.++...   +.. ..+.+..              .-.....|+++++|+++++=+.++.|+.
T Consensus       178 ~~~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~~~--------------h~~~v~~~~~s~~~~~l~s~~~dg~i~i  240 (437)
T 3gre_A          178 VNEEKSLLVALTNLSRVIIFDIRT---LERLQIIENSP--------------RHGAVSSICIDEECCVLILGTTRGIIDI  240 (437)
T ss_dssp             ECSSCEEEEEEETTSEEEEEETTT---CCEEEEEECCG--------------GGCCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred             EcCCCCEEEEEeCCCeEEEEeCCC---CeeeEEEccCC--------------CCCceEEEEECCCCCEEEEEcCCCeEEE
Confidence            446788888888889999999862   322 2222210              1124678999999998887777888999


Q ss_pred             EcCC
Q 010579          169 ISDT  172 (507)
Q Consensus       169 ~d~~  172 (507)
                      +|..
T Consensus       241 wd~~  244 (437)
T 3gre_A          241 WDIR  244 (437)
T ss_dssp             EETT
T ss_pred             EEcC
Confidence            9843

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=80.30  E-value=40  Score=32.18  Aligned_cols=124  Identities=14%  Similarity=0.135  Sum_probs=61.5

Q ss_pred             CeeEEEEcCCCc-EEEE-e-CCCCe--EEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC-CCCEE
Q 010579           84 EPFSVAVSPSGE-LLVL-D-SENSN--IYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIY  157 (507)
Q Consensus        84 ~P~gIaVd~dG~-LYVa-D-s~n~r--I~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~-dGnIY  157 (507)
                      .+..++++|||. |+++ . ....+  |++++..+   +....+....        +      .    .+++.+ ||.++
T Consensus       239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~---g~~~~l~~~~--------~------~----~~~~s~~dg~~l  297 (396)
T 3c5m_A          239 SCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET---LENEEVMVMP--------P------C----SHLMSNFDGSLM  297 (396)
T ss_dssp             EEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT---CCEEEEEECC--------S------E----EEEEECSSSSEE
T ss_pred             cccceEECCCCCEEEEEecCCCCccceEEEEECCC---CCeEEeeeCC--------C------C----CCCccCCCCceE
Confidence            355678999987 5544 2 23334  99998762   4443332110        0      1    167888 89877


Q ss_pred             EEeC----------------CCCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeC-
Q 010579          158 IADT----------------MNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR-  218 (507)
Q Consensus       158 VADs----------------~N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~-  218 (507)
                      ++..                ++..|++++..+  +..+......  .+..+.   +. ......+++.++...|+++.. 
T Consensus       298 ~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~--~~~~~~---~~-~~~~~~~~~s~dg~~l~~~s~~  371 (396)
T 3c5m_A          298 VGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTS--WDVLDG---DR-QITHPHPSFTPNDDGVLFTSDF  371 (396)
T ss_dssp             EEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCC--CCCBTT---BS-STTCCCCEECTTSSEEEEEECT
T ss_pred             EEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCc--cccccc---cc-cCCCCCceEccCCCeEEEEecC
Confidence            7543                346788898543  4344321100  000000   00 111233444333345655543 


Q ss_pred             -CCCeEEEEECCCCcee
Q 010579          219 -GNQAIREIQLHDDDCS  234 (507)
Q Consensus       219 -gn~rIr~I~l~~~~~~  234 (507)
                       +...|..+++++..+.
T Consensus       372 ~~~~~l~~~~~~~~~~~  388 (396)
T 3c5m_A          372 EGVPAIYIADVPESYKH  388 (396)
T ss_dssp             TSSCEEEEEECCTTCC-
T ss_pred             CCCceEEEEEEcccccc
Confidence             3346777777665443

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=80.17  E-value=39  Score=31.57  Aligned_cols=69  Identities=10%  Similarity=0.025  Sum_probs=50.6

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEE--cCCCCEEEEeC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAV--DDRGNIYIADT  161 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaV--d~dGnIYVADs  161 (507)
                      .-..|+++++|.++++-..++.|+.++...   +....+.+..                .....|++  +++|+++++-+
T Consensus        88 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~---~~~~~~~~~~----------------~~v~~~~~~~~~~~~~l~~~~  148 (368)
T 3mmy_A           88 PVLDVCWSDDGSKVFTASCDKTAKMWDLSS---NQAIQIAQHD----------------APVKTIHWIKAPNYSCVMTGS  148 (368)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTT---TEEEEEEECS----------------SCEEEEEEEECSSCEEEEEEE
T ss_pred             CEEEEEECcCCCEEEEEcCCCcEEEEEcCC---CCceeecccc----------------CceEEEEEEeCCCCCEEEEcc
Confidence            467899999998888777889999999873   4333333221                23567888  88888777777


Q ss_pred             CCCeEEEEcC
Q 010579          162 MNMAIRKISD  171 (507)
Q Consensus       162 ~N~rIrk~d~  171 (507)
                      .++.|+.+|.
T Consensus       149 ~dg~i~vwd~  158 (368)
T 3mmy_A          149 WDKTLKFWDT  158 (368)
T ss_dssp             TTSEEEEECS
T ss_pred             CCCcEEEEEC
Confidence            7888999994

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=80.06  E-value=12  Score=42.33  Aligned_cols=29  Identities=7%  Similarity=0.044  Sum_probs=24.8

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTS  112 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~  112 (507)
                      ....|+++|||.++++-...+.|+.++..
T Consensus       490 ~V~svafspdg~~LAsgs~DgtV~lwd~~  518 (902)
T 2oaj_A          490 AVDKISFAAETLELAVSIETGDVVLFKYE  518 (902)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             ceeEEEecCCCCeEEEEecCcEEEEEEec
Confidence            56899999999988888888898888865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	507
d1q7fa_	279	b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (D	6e-06
d1rwia_	260	b.68.9.1 (A:) Serine/threonine-protein kinase PknD	2e-04
d1rwia_	260	b.68.9.1 (A:) Serine/threonine-protein kinase PknD	0.001
d1rwia_	260	b.68.9.1 (A:) Serine/threonine-protein kinase PknD	0.003

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 279

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 45.4 bits (106), Expect = 6e-06
 Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 5/94 (5%)

Query: 118 RPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTI 177
           R +++     G +G ++G+        P G+AV+ + +I +ADT N  I+     G    
Sbjct: 3   RQRMIYHCKFGEFGVMEGQ-----FTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKF 57

Query: 178 AGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC 211
             G+  +    +  P+  A   N  D++    S 
Sbjct: 58  QFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP 91

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 260

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 139 GARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG 173
              +N P  +AVD    +Y+AD  N  + K++   
Sbjct: 220 FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE 254

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 260

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 24/128 (18%), Positives = 42/128 (32%), Gaps = 19/128 (14%)

Query: 76  FEGSKFGMEPFSVAVSPSGELLVLDSENSN-IYKISTSLSPYSRPKLVAGSPEGYYGHVD 134
           F G  F + P  VAV  +G + V        + K++T                       
Sbjct: 7   FTGIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATG------------------STGT 48

Query: 135 GRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSE 194
                  +  P+GLAVD  G +Y+ D  N  +   + +   T+           +   ++
Sbjct: 49  TVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQ 108

Query: 195 DAKFSNDF 202
            A +  D 
Sbjct: 109 GAVYVADR 116

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 260

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 64  IKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKIST 111
           +K   G T  TV   +     P +VAV     + V D  N  + K+++
Sbjct: 206 VKLLAGSTTSTVLPFTGLN-TPLAVAVDSDRTVYVADRGNDRVVKLTS 252

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	507
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.63
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.62
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.6
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.6
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.41
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.37
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.37
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.35
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.28
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.27
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.26
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.25
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.2
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.19
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.86
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.8
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.38
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.07
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.07
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.03
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.91
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.91
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	97.68
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	97.66
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	97.56
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	97.5
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.48
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	97.36
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	97.35
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	97.33
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	97.12
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	97.08
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	96.83
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	96.8
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	96.44
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	96.4
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	96.07
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	95.86
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	95.26
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	95.22
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	94.73
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	94.63
d1tbga_	340	beta1-subunit of the signal-transducing G protein	94.41
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	94.32
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	93.49
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	93.42
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	93.22
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	92.36
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	91.25
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	91.21
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	90.97
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	90.34
d1tbga_	340	beta1-subunit of the signal-transducing G protein	89.5
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	89.49
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	89.36
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	88.39
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	87.39
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	84.79
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	84.38
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	82.36
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	81.25

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.63  E-value=2.1e-15  Score=144.35  Aligned_cols=115  Identities=24%  Similarity=0.398  Sum_probs=94.2

Q ss_pred             CCCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeC
Q 010579           82 GMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT  161 (507)
Q Consensus        82 ~~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs  161 (507)
                      +..|.+|+++++|+|||+|..+++|.+++.++    ........              ..|..|.||++|++|+|||+|.
T Consensus       139 ~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~----~~~~~~~~--------------~~~~~p~gi~~d~~g~l~vsd~  200 (260)
T d1rwia_         139 LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES----NNQVVLPF--------------TDITAPWGIAVDEAGTVYVTEH  200 (260)
T ss_dssp             CCSCCEEEECTTCCEEEEEGGGTEEEEECTTT----CCEEECCC--------------SSCCSEEEEEECTTCCEEEEET
T ss_pred             cCCcceeeecCCCCEeeecccccccccccccc----ceeeeeec--------------cccCCCccceeeeeeeeeeeec
Confidence            46899999999999999999999999999873    22222211              2478999999999999999999


Q ss_pred             CCCeEEEEcCCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCC
Q 010579          162 MNMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  230 (507)
Q Consensus       162 ~N~rIrk~d~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~  230 (507)
                      .+++|.+++.++ ..++..               ...|..|.+|+ ++++|+|||+|.++++|++|+..+
T Consensus       201 ~~~~i~~~~~~~~~~~~~~---------------~~~~~~P~~i~-~d~~g~l~vad~~~~rI~~i~~~~  254 (260)
T d1rwia_         201 NTNQVVKLLAGSTTSTVLP---------------FTGLNTPLAVA-VDSDRTVYVADRGNDRVVKLTSLE  254 (260)
T ss_dssp             TTTEEEEECTTCSCCEECC---------------CCSCCCEEEEE-ECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             CCCEEEEEeCCCCeEEEEc---------------cCCCCCeEEEE-EeCCCCEEEEECCCCEEEEEeCCC
Confidence            999999999877 444421               12377899998 588899999999999999998654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.62  E-value=1.3e-14  Score=138.71  Aligned_cols=143  Identities=18%  Similarity=0.255  Sum_probs=112.1

Q ss_pred             CCCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeC
Q 010579           82 GMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT  161 (507)
Q Consensus        82 ~~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs  161 (507)
                      +..|.+|+++++|+||++|..++++.+++..+    ........              ..++.|.+|+++++|+|||+|.
T Consensus        97 ~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~----~~~~~~~~--------------~~~~~p~~i~~~~~g~~~v~~~  158 (260)
T d1rwia_          97 LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS----KTQTVLPF--------------TGLNDPDGVAVDNSGNVYVTDT  158 (260)
T ss_dssp             CCSEEEEEECTTCCEEEEEGGGTEEEEECTTC----SSCEECCC--------------CSCCSCCEEEECTTCCEEEEEG
T ss_pred             eeecccccccccceeEeecccccccccccccc----ceeeeeee--------------cccCCcceeeecCCCCEeeecc
Confidence            36899999999999999999999999999863    22222221              1367899999999999999999


Q ss_pred             CCCeEEEEcCCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceeeCCCC-
Q 010579          162 MNMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDD-  239 (507)
Q Consensus       162 ~N~rIrk~d~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~~~~~-  239 (507)
                      .+++|.+++.++ ......               ...+..|.+|+ ++++|+|||+|..+++|.++++.+..+...... 
T Consensus       159 ~~~~i~~~d~~~~~~~~~~---------------~~~~~~p~gi~-~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~  222 (260)
T d1rwia_         159 DNNRVVKLEAESNNQVVLP---------------FTDITAPWGIA-VDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTG  222 (260)
T ss_dssp             GGTEEEEECTTTCCEEECC---------------CSSCCSEEEEE-ECTTCCEEEEETTTTEEEEECTTCSCCEECCCCS
T ss_pred             ccccccccccccceeeeee---------------ccccCCCccce-eeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCC
Confidence            999999999877 222211               13477899998 588999999999999999999988777665444 


Q ss_pred             -CccceEEEEec-ceeEEehh
Q 010579          240 -TFHLGIFVLVA-AAFFGYML  258 (507)
Q Consensus       240 -G~p~gIa~~~~-a~~~gy~~  258 (507)
                       ..|.+|++... ..|+.+..
T Consensus       223 ~~~P~~i~~d~~g~l~vad~~  243 (260)
T d1rwia_         223 LNTPLAVAVDSDRTVYVADRG  243 (260)
T ss_dssp             CCCEEEEEECTTCCEEEEEGG
T ss_pred             CCCeEEEEEeCCCCEEEEECC
Confidence             46999999853 45555544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.60  E-value=3.3e-14  Score=137.26  Aligned_cols=117  Identities=20%  Similarity=0.288  Sum_probs=92.8

Q ss_pred             CCCCCCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEE
Q 010579           79 SKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYI  158 (507)
Q Consensus        79 ~~~~~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYV  158 (507)
                      ...+..|.+|+++++|+|||+|..+++|++++.+    |......|.        .     ..++.|.||++|++|+|||
T Consensus       153 ~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~----G~~~~~~g~--------~-----g~~~~P~giavD~~G~i~V  215 (279)
T d1q7fa_         153 SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE----GQYLRQIGG--------E-----GITNYPIGVGINSNGEILI  215 (279)
T ss_dssp             TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT----CCEEEEESC--------T-----TTSCSEEEEEECTTCCEEE
T ss_pred             cccccccceeeeccceeEEeeeccccceeeeecC----Cceeeeecc--------c-----ccccCCcccccccCCeEEE
Confidence            3445789999999999999999999999999987    443333332        1     2588999999999999999


Q ss_pred             EeCC-CCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECC
Q 010579          159 ADTM-NMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH  229 (507)
Q Consensus       159 ADs~-N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~  229 (507)
                      ||.. +.+|.+|+.+|  +.++....               .+..|.+|+ ++++|+|||+| .|++|+++.-.
T Consensus       216 ad~~~~~~v~~f~~~G~~~~~~~~~~---------------~~~~p~~va-v~~dG~l~V~~-~n~~v~~fr~~  272 (279)
T d1q7fa_         216 ADNHNNFNLTIFTQDGQLISALESKV---------------KHAQCFDVA-LMDDGSVVLAS-KDYRLYIYRYV  272 (279)
T ss_dssp             EECSSSCEEEEECTTSCEEEEEEESS---------------CCSCEEEEE-EETTTEEEEEE-TTTEEEEEECS
T ss_pred             EECCCCcEEEEECCCCCEEEEEeCCC---------------CCCCEeEEE-EeCCCcEEEEe-CCCeEEEEEee
Confidence            9986 55899999999  45564321               234799998 57889999999 58999999854

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.60  E-value=6.7e-14  Score=135.07  Aligned_cols=138  Identities=15%  Similarity=0.265  Sum_probs=108.6

Q ss_pred             CCCCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEe
Q 010579           81 FGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIAD  160 (507)
Q Consensus        81 ~~~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVAD  160 (507)
                      .+..|.+++++++|.+|++|..+++|.+++.+    +++....+..             ..+..|.+|++|++|+|||+|
T Consensus       112 ~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~----g~~~~~~g~~-------------~~~~~~~~i~~d~~g~i~v~d  174 (279)
T d1q7fa_         112 ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN----GNVLHKFGCS-------------KHLEFPNGVVVNDKQEIFISD  174 (279)
T ss_dssp             TCSCEEEEEECTTSCEEEEETTTTEEEEECTT----SCEEEEEECT-------------TTCSSEEEEEECSSSEEEEEE
T ss_pred             cccccceeccccCCcEEEEeeccceeeEeccC----Cceeeccccc-------------ccccccceeeeccceeEEeee
Confidence            34789999999999999999999999999987    4443333321             247899999999999999999


Q ss_pred             CCCCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCC-CeEEEEECCCCceee--
Q 010579          161 TMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN-QAIREIQLHDDDCSD--  235 (507)
Q Consensus       161 s~N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn-~rIr~I~l~~~~~~~--  235 (507)
                      ..+++|++++.+|  +.++.  .             ...++.|.+|+ +|++|+|||+|..+ ++|++++.++.....  
T Consensus       175 ~~~~~V~~~d~~G~~~~~~g--~-------------~g~~~~P~gia-vD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~  238 (279)
T d1q7fa_         175 NRAHCVKVFNYEGQYLRQIG--G-------------EGITNYPIGVG-INSNGEILIADNHNNFNLTIFTQDGQLISALE  238 (279)
T ss_dssp             GGGTEEEEEETTCCEEEEES--C-------------TTTSCSEEEEE-ECTTCCEEEEECSSSCEEEEECTTSCEEEEEE
T ss_pred             ccccceeeeecCCceeeeec--c-------------cccccCCcccc-cccCCeEEEEECCCCcEEEEECCCCCEEEEEe
Confidence            9999999999988  34441  1             23578899998 58999999999865 579999988875433  


Q ss_pred             -CCCCCccceEEEEecc
Q 010579          236 -NYDDTFHLGIFVLVAA  251 (507)
Q Consensus       236 -~~~~G~p~gIa~~~~a  251 (507)
                       ....+.|.+||+....
T Consensus       239 ~~~~~~~p~~vav~~dG  255 (279)
T d1q7fa_         239 SKVKHAQCFDVALMDDG  255 (279)
T ss_dssp             ESSCCSCEEEEEEETTT
T ss_pred             CCCCCCCEeEEEEeCCC
Confidence             2334468899988764

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.41  E-value=3.2e-12  Score=126.14  Aligned_cols=124  Identities=13%  Similarity=0.185  Sum_probs=91.4

Q ss_pred             CCCeeEEEEcCCCcEEEEeCCC------CeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC
Q 010579           82 GMEPFSVAVSPSGELLVLDSEN------SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN  155 (507)
Q Consensus        82 ~~~P~gIaVd~dG~LYVaDs~n------~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn  155 (507)
                      ...|++++++++|+|||+|..+      +.|+++++++   +.+..+..                .+..|+||+++++|+
T Consensus       129 ~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg---~~~~~~~~----------------~~~~pnGia~s~dg~  189 (319)
T d2dg1a1         129 AYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF---RTVTPIIQ----------------NISVANGIALSTDEK  189 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS---CCEEEEEE----------------EESSEEEEEECTTSS
T ss_pred             ccCCcceeEEeccceeecccccccccCcceeEEEeccc---ceeEEEee----------------ccceeeeeeeccccc
Confidence            4679999999999999999764      4589998873   23333332                256899999999997


Q ss_pred             -EEEEeCCCCeEEEEc--CCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 010579          156 -IYIADTMNMAIRKIS--DTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD  231 (507)
Q Consensus       156 -IYVADs~N~rIrk~d--~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~  231 (507)
                       |||+|+.+++|++|+  .++ .....+...         ......+..|.||+ +|.+|+|||++.++++|++|++++.
T Consensus       190 ~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~---------~~~~~~~~~PdGl~-vD~~G~l~Va~~~~g~V~~~~p~G~  259 (319)
T d2dg1a1         190 VLWVTETTANRLHRIALEDDGVTIQPFGATI---------PYYFTGHEGPDSCC-IDSDDNLYVAMYGQGRVLVFNKRGY  259 (319)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSSSEEEEEEEE---------EEECCSSSEEEEEE-EBTTCCEEEEEETTTEEEEECTTSC
T ss_pred             eEEEecccCCceEEEEEcCCCceecccccee---------eeccCCccceeeee-EcCCCCEEEEEcCCCEEEEECCCCc
Confidence             999999999999997  344 221111110         00112234589998 6999999999999999999999876


Q ss_pred             cee
Q 010579          232 DCS  234 (507)
Q Consensus       232 ~~~  234 (507)
                      ...
T Consensus       260 ~l~  262 (319)
T d2dg1a1         260 PIG  262 (319)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=4.9e-11  Score=115.45  Aligned_cols=177  Identities=14%  Similarity=0.124  Sum_probs=128.1

Q ss_pred             ecCCcEEEEEeCCCCeEEecCcceEeeCCeeeEEeecCCCCCCCeeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCcc
Q 010579           41 SALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRP  119 (507)
Q Consensus        41 ~ag~~~I~~~d~~t~~i~aG~~~~~~~~G~~~~~~~~G~~~~~~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i  119 (507)
                      +.....|+..|...+.+.     ....+|...++.....  ...|.+||+|. .++||++|...++|.++++++.   ..
T Consensus        44 D~~~~~iywsd~~~~~I~-----~~~l~g~~~~~v~~~~--~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~---~~  113 (263)
T d1npea_          44 DCVDKVVYWTDISEPSIG-----RASLHGGEPTTIIRQD--LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT---QR  113 (263)
T ss_dssp             ETTTTEEEEEETTTTEEE-----EEESSSCCCEEEECTT--CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SC
T ss_pred             EeCCCEEEEEECCCCeEE-----EEEcccCCcEEEEEec--cccccEEEEeccCCeEEEeccCCCEEEEEecCCc---eE
Confidence            345577777777766654     2223444444444322  34799999996 7789999999999999999843   22


Q ss_pred             EEEecCCCCccccCCCCcccccCCCcceEEEcC-CCCEEEEeCCC--CeEEEEcCCC--cEEEecCcccCCCCCCCCCcc
Q 010579          120 KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTMN--MAIRKISDTG--VTTIAGGKWSRGVGHVDGPSE  194 (507)
Q Consensus       120 ~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~-dGnIYVADs~N--~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~  194 (507)
                      .+++..               .+..|.+|++|+ .|.||++|.+.  .+|.+.+.+|  ..++..               
T Consensus       114 ~~l~~~---------------~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~---------------  163 (263)
T d1npea_         114 RVLFDT---------------GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ---------------  163 (263)
T ss_dssp             EEEECS---------------SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC---------------
T ss_pred             EEEecc---------------cccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeee---------------
Confidence            333322               267899999998 67799999874  4799999877  455532               


Q ss_pred             CccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee-CCCCCccceEEEEecceeEEehh
Q 010579          195 DAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD-NYDDTFHLGIFVLVAAAFFGYML  258 (507)
Q Consensus       195 ~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~-~~~~G~p~gIa~~~~a~~~gy~~  258 (507)
                       ..+..|.+|+++..++.||++|.+.++|.++++++..+.. ..+...|.+|++..+-.|+.+..
T Consensus       164 -~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~~~~lYwtd~~  227 (263)
T d1npea_         164 -DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWK  227 (263)
T ss_dssp             -TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEETTEEEEEETT
T ss_pred             -ecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEECCEEEEEECC
Confidence             1356899999766788999999999999999999977654 33445688999987777776643

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=4e-11  Score=116.00  Aligned_cols=181  Identities=15%  Similarity=0.119  Sum_probs=123.0

Q ss_pred             cCCcEEEEEeCCCCeEEecCcceEeeCCeeeEEeecCCCCCCCeeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccE
Q 010579           42 ALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPK  120 (507)
Q Consensus        42 ag~~~I~~~d~~t~~i~aG~~~~~~~~G~~~~~~~~G~~~~~~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~  120 (507)
                      .....|+..|...+.+..... -........+.....  ....|.+||+|. .++||++|..+++|.+++.++..   ..
T Consensus        39 ~~~~~lYw~D~~~~~I~~~~l-~~~~~~~~~~~~~~~--~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~---~~  112 (266)
T d1ijqa1          39 VASNRIYWSDLSQRMICSTQL-DRAHGVSSYDTVISR--DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK---RK  112 (266)
T ss_dssp             TTTTEEEEEETTTTEEEEEEC---------CEEEECS--SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS---EE
T ss_pred             eCCCEEEEEECCCCEEEEEEe-cCCCCCcceEEEEeC--CCCCcceEEEeeccceEEEEecCCCEEEeEecCCce---EE
Confidence            344666667766655442110 000111122222221  235799999997 77899999999999999998422   22


Q ss_pred             EEecCCCCccccCCCCcccccCCCcceEEEcC-CCCEEEEeCCC-CeEEEEcCCC--cEEEecCcccCCCCCCCCCccCc
Q 010579          121 LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTMN-MAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDA  196 (507)
Q Consensus       121 ~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~-dGnIYVADs~N-~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a  196 (507)
                      .+...               .+..|.+|++|+ +|.||++|.+. .+|.+.+.+|  ..++..                .
T Consensus       113 ~~~~~---------------~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~----------------~  161 (266)
T d1ijqa1         113 TLFRE---------------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT----------------E  161 (266)
T ss_dssp             EEEEC---------------TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC----------------S
T ss_pred             EEEcC---------------CCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccc----------------c
Confidence            22211               257899999998 68899999874 5899999888  455532                1


Q ss_pred             cCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceeeC--CC--CCccceEEEEecceeEEehhH
Q 010579          197 KFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN--YD--DTFHLGIFVLVAAAFFGYMLA  259 (507)
Q Consensus       197 ~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~~--~~--~G~p~gIa~~~~a~~~gy~~~  259 (507)
                      .+..|.+|++...++.||++|...++|.++++++..+...  ..  ...|.+|++..+..|+.+...
T Consensus       162 ~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td~~~  228 (266)
T d1ijqa1         162 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIIN  228 (266)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTT
T ss_pred             ccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEECCC
Confidence            2568999997667889999999999999999999776442  22  235889999987777766443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.35  E-value=3.8e-11  Score=118.27  Aligned_cols=174  Identities=13%  Similarity=0.090  Sum_probs=113.7

Q ss_pred             CCcEEEEEeCCCCeEEecCcceEeeCCe-eeEEeecCCCCCCCeeEEEEcCCCcEEEEeCC----CCeEEEEeCCCCCCC
Q 010579           43 LVKWLWSLKDSPKTAVSSSSMIKFEGGY-TVETVFEGSKFGMEPFSVAVSPSGELLVLDSE----NSNIYKISTSLSPYS  117 (507)
Q Consensus        43 g~~~I~~~d~~t~~i~aG~~~~~~~~G~-~~~~~~~G~~~~~~P~gIaVd~dG~LYVaDs~----n~rI~ki~~~g~~~g  117 (507)
                      ....||..|...+++..     ...++. ........   ...|.+|++++||+|||++..    ...|.+++..+   +
T Consensus        49 ~~G~Ly~~D~~~g~I~r-----i~p~g~~~~~~~~~~---~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~---~  117 (319)
T d2dg1a1          49 RQGQLFLLDVFEGNIFK-----INPETKEIKRPFVSH---KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG---D  117 (319)
T ss_dssp             TTSCEEEEETTTCEEEE-----ECTTTCCEEEEEECS---SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS---C
T ss_pred             CCCCEEEEECCCCEEEE-----EECCCCeEEEEEeCC---CCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCC---c
Confidence            34557777766665541     111222 22222221   236999999999999999865    45788888763   3


Q ss_pred             ccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCC------eEEEEcCCC--cEEEecCcccCCCCCC
Q 010579          118 RPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM------AIRKISDTG--VTTIAGGKWSRGVGHV  189 (507)
Q Consensus       118 ~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~------rIrk~d~~G--VstIaGG~~g~~~G~~  189 (507)
                      .+..+....             .....|+++++|++|+|||+|..+.      .|.+++.++  +..+..          
T Consensus       118 ~~~~~~~~~-------------~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~----------  174 (319)
T d2dg1a1         118 NLQDIIEDL-------------STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ----------  174 (319)
T ss_dssp             SCEEEECSS-------------SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE----------
T ss_pred             eeeeeccCC-------------CcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEee----------
Confidence            344443221             1356799999999999999998643      488888766  444432          


Q ss_pred             CCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee----------CCCCCccceEEEEecc-eeEEeh
Q 010579          190 DGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD----------NYDDTFHLGIFVLVAA-AFFGYM  257 (507)
Q Consensus       190 dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~----------~~~~G~p~gIa~~~~a-~~~gy~  257 (507)
                             .+..|+||++.++.+.|||+|+.+++|++++++.+....          ....+.|.|++++... .|++..
T Consensus       175 -------~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~  246 (319)
T d2dg1a1         175 -------NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY  246 (319)
T ss_dssp             -------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEE
T ss_pred             -------ccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEc
Confidence                   256799999644445699999999999999987643211          2233468899997653 344443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.28  E-value=5.6e-11  Score=117.14  Aligned_cols=136  Identities=15%  Similarity=0.153  Sum_probs=96.7

Q ss_pred             CeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           84 EPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      .|.+|+++++|+ |||+|.. ++|++++++    +....++...  .    +|    ..|+.|+++++|++|+|||+|..
T Consensus        72 ~P~Gl~~~~dg~~l~vad~~-~~i~~~~~~----g~~~~~~~~~--~----~g----~~~~~pndl~~d~~G~lyvtd~~  136 (314)
T d1pjxa_          72 IPAGCQCDRDANQLFVADMR-LGLLVVQTD----GTFEEIAKKD--S----EG----RRMQGCNDCAFDYEGNLWITAPA  136 (314)
T ss_dssp             CEEEEEECSSSSEEEEEETT-TEEEEEETT----SCEEECCSBC--T----TS----CBCBCCCEEEECTTSCEEEEECB
T ss_pred             cceeEEEeCCCCEEEEEECC-CeEEEEeCC----CcEEEEEecc--c----cc----cccCCCcEEEECCCCCEEEecCc
Confidence            699999999986 7888864 689999987    4444433221  1    22    35889999999999999999964


Q ss_pred             ---------------CCeEEEEcCCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCC----eEEEEeCCCCe
Q 010579          163 ---------------NMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC----SLLVIDRGNQA  222 (507)
Q Consensus       163 ---------------N~rIrk~d~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G----~LyVaD~gn~r  222 (507)
                                     .++|.+++.+| +..+..                 .+..|+||++.++..    .|||+|+.+++
T Consensus       137 ~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~-----------------~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~  199 (314)
T d1pjxa_         137 GEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDT-----------------AFQFPNGIAVRHMNDGRPYQLIVAETPTKK  199 (314)
T ss_dssp             CBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEE-----------------EESSEEEEEEEECTTSCEEEEEEEETTTTE
T ss_pred             cCcccccccceeccCCceEEEEeecCceeEeeC-----------------CcceeeeeEECCCCCcceeEEEEEeecccc
Confidence                           23788898887 443322                 256789998754432    69999999999


Q ss_pred             EEEEECCCCceee---------CCCCCccceEEEEecc
Q 010579          223 IREIQLHDDDCSD---------NYDDTFHLGIFVLVAA  251 (507)
Q Consensus       223 Ir~I~l~~~~~~~---------~~~~G~p~gIa~~~~a  251 (507)
                      |++++++.+....         ....+.|.||+++...
T Consensus       200 i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~G  237 (314)
T d1pjxa_         200 LWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN  237 (314)
T ss_dssp             EEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC
T ss_pred             eEEeeccCccccceeeEEEEccccccccceeeEEecCC
Confidence            9999876543211         1223468899887653

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.27  E-value=3.9e-11  Score=118.29  Aligned_cols=133  Identities=14%  Similarity=0.126  Sum_probs=95.6

Q ss_pred             CCCeeEEEEcCCCcEEEEeCCC---------------CeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcc
Q 010579           82 GMEPFSVAVSPSGELLVLDSEN---------------SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPK  146 (507)
Q Consensus        82 ~~~P~gIaVd~dG~LYVaDs~n---------------~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~  146 (507)
                      +..|+++++|++|+|||+|...               ++|++++++    +....++.                .+..|+
T Consensus       116 ~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d----g~~~~~~~----------------~~~~pN  175 (314)
T d1pjxa_         116 MQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD----GQMIQVDT----------------AFQFPN  175 (314)
T ss_dssp             CBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT----SCEEEEEE----------------EESSEE
T ss_pred             cCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec----CceeEeeC----------------Ccceee
Confidence            3579999999999999999652               478888886    44444332                267899


Q ss_pred             eEEEcCCCC-----EEEEeCCCCeEEEEc--CCC-cE---EEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEE
Q 010579          147 GLAVDDRGN-----IYIADTMNMAIRKIS--DTG-VT---TIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLV  215 (507)
Q Consensus       147 GIaVd~dGn-----IYVADs~N~rIrk~d--~~G-Vs---tIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyV  215 (507)
                      ||+++++++     |||+|+.+++|++++  .+| +.   .++.-         ++    .....|.+|+ +|.+|+|||
T Consensus       176 Gi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~---------~~----~~~~~pdGia-vD~~GnlyV  241 (314)
T d1pjxa_         176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI---------PG----THEGGADGMD-FDEDNNLLV  241 (314)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC---------CC----CSSCEEEEEE-EBTTCCEEE
T ss_pred             eeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEc---------cc----cccccceeeE-EecCCcEEE
Confidence            999988764     999999999999987  344 21   11110         00    1123588998 599999999


Q ss_pred             EeCCCCeEEEEECCCCceee--CCCCCccceEEEE
Q 010579          216 IDRGNQAIREIQLHDDDCSD--NYDDTFHLGIFVL  248 (507)
Q Consensus       216 aD~gn~rIr~I~l~~~~~~~--~~~~G~p~gIa~~  248 (507)
                      ++.++++|++|++++.....  ......|+++|+.
T Consensus       242 a~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg  276 (314)
T d1pjxa_         242 ANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFK  276 (314)
T ss_dssp             EEETTTEEEEECTTCBSCSEEEECSSSCEEEEEEC
T ss_pred             EEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEe
Confidence            99999999999998754322  2223457777774

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=4.3e-10  Score=108.61  Aligned_cols=131  Identities=16%  Similarity=0.188  Sum_probs=98.4

Q ss_pred             CCCeeEEEEcC-CCcEEEEeCCC--CeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCC-CCEE
Q 010579           82 GMEPFSVAVSP-SGELLVLDSEN--SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDR-GNIY  157 (507)
Q Consensus        82 ~~~P~gIaVd~-dG~LYVaDs~n--~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~d-GnIY  157 (507)
                      +..|.+|++|| .|.||+++.+.  .+|.+.+++|..   ...++..               .+..|.|||+|.. +.||
T Consensus       121 l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~---~~~i~~~---------------~~~~P~glaiD~~~~~lY  182 (263)
T d1npea_         121 LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN---RRILAQD---------------NLGLPNGLTFDAFSSQLC  182 (263)
T ss_dssp             CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC---CEEEECT---------------TCSCEEEEEEETTTTEEE
T ss_pred             ccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC---ceeeeee---------------cccccceEEEeecCcEEE
Confidence            36899999998 78899999764  479999998521   2333221               2568999999975 4599


Q ss_pred             EEeCCCCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee
Q 010579          158 IADTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD  235 (507)
Q Consensus       158 VADs~N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~  235 (507)
                      ++|.+.++|.+++.+|  +.+++-                 .+..|.+|++ + ++.||++|.++++|.+++..+.....
T Consensus       183 w~d~~~~~I~~~~~~g~~~~~v~~-----------------~~~~P~~lav-~-~~~lYwtd~~~~~I~~~~~~~g~~~~  243 (263)
T d1npea_         183 WVDAGTHRAECLNPAQPGRRKVLE-----------------GLQYPFAVTS-Y-GKNLYYTDWKTNSVIAMDLAISKEMD  243 (263)
T ss_dssp             EEETTTTEEEEEETTEEEEEEEEE-----------------CCCSEEEEEE-E-TTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEeCCCCEEEEEECCCCCeEEEEC-----------------CCCCcEEEEE-E-CCEEEEEECCCCEEEEEECCCCccce
Confidence            9999999999999888  555532                 1457899986 3 68999999999999999998655332


Q ss_pred             ---CCCCCccceEEEEe
Q 010579          236 ---NYDDTFHLGIFVLV  249 (507)
Q Consensus       236 ---~~~~G~p~gIa~~~  249 (507)
                         ......|.||++.-
T Consensus       244 ~~~~~~~~~~~gi~v~~  260 (263)
T d1npea_         244 TFHPHKQTRLYGITIAL  260 (263)
T ss_dssp             EECCSSCCCCCCEEEEC
T ss_pred             EECCCCCCCcceEEEeC
Confidence               23334677888753

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=7.4e-10  Score=106.89  Aligned_cols=133  Identities=18%  Similarity=0.192  Sum_probs=97.9

Q ss_pred             CCCeeEEEEcC-CCcEEEEeCCC-CeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCC-CCEEE
Q 010579           82 GMEPFSVAVSP-SGELLVLDSEN-SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDR-GNIYI  158 (507)
Q Consensus        82 ~~~P~gIaVd~-dG~LYVaDs~n-~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~d-GnIYV  158 (507)
                      ...|.+|++|+ +|.||++|.+. .+|.+.+++|+   ....++..               .+..|+||++|.. +.||+
T Consensus       119 ~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs---~~~~l~~~---------------~~~~p~gl~iD~~~~~lYw  180 (266)
T d1ijqa1         119 GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---DIYSLVTE---------------NIQWPNGITLDLLSGRLYW  180 (266)
T ss_dssp             TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---CEEEEECS---------------SCSCEEEEEEETTTTEEEE
T ss_pred             CCCcceEEEEcccCeEEEeccCCCcceeEeccCCC---ceeccccc---------------ccceeeEEEeeccccEEEE
Confidence            35899999998 78999999764 69999999852   23333322               2678999999985 45999


Q ss_pred             EeCCCCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCc-eee
Q 010579          159 ADTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD-CSD  235 (507)
Q Consensus       159 ADs~N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~-~~~  235 (507)
                      +|..+++|.+++.+|  +.++..+.              ..+..|.+|++ + ++.||++|..+++|.+++..+.. +..
T Consensus       181 ~d~~~~~I~~~~~dG~~~~~~~~~~--------------~~~~~p~~lav-~-~~~ly~td~~~~~I~~~~~~~g~~~~~  244 (266)
T d1ijqa1         181 VDSKLHSISSIDVNGGNRKTILEDE--------------KRLAHPFSLAV-F-EDKVFWTDIINEAIFSANRLTGSDVNL  244 (266)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEECT--------------TTTSSEEEEEE-E-TTEEEEEETTTTEEEEEETTTCCCCEE
T ss_pred             ecCCcCEEEEEECCCCCEEEEEeCC--------------CcccccEEEEE-E-CCEEEEEECCCCeEEEEECCCCcceEE
Confidence            999999999999777  45553321              13568999995 4 58999999999999999976643 222


Q ss_pred             -CCCCCccceEEEE
Q 010579          236 -NYDDTFHLGIFVL  248 (507)
Q Consensus       236 -~~~~G~p~gIa~~  248 (507)
                       ......|.+|.+.
T Consensus       245 ~~~~~~~p~~i~v~  258 (266)
T d1ijqa1         245 LAENLLSPEDMVLF  258 (266)
T ss_dssp             EECSCSCCCCEEEE
T ss_pred             EEcCCCCceEEEEE
Confidence             2333456676654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.20  E-value=1.3e-09  Score=105.56  Aligned_cols=185  Identities=14%  Similarity=0.037  Sum_probs=120.5

Q ss_pred             EeEEEecCCcEEEEEeCCCCeEEecCcceEeeCCeeeEEeecCCCCCCCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCC
Q 010579           36 VSNVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSP  115 (507)
Q Consensus        36 l~~va~ag~~~I~~~d~~t~~i~aG~~~~~~~~G~~~~~~~~G~~~~~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~  115 (507)
                      +..++...+..||..+...+++.     ....+|. .+.....   ...|.+|++++||+|||++..++.|.+++.....
T Consensus        30 ~e~iAv~pdG~l~vt~~~~~~I~-----~i~p~g~-~~~~~~~---~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~  100 (302)
T d2p4oa1          30 LENLASAPDGTIFVTNHEVGEIV-----SITPDGN-QQIHATV---EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSD  100 (302)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEE-----EECTTCC-EEEEEEC---SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTT
T ss_pred             cCCEEECCCCCEEEEeCCCCEEE-----EEeCCCC-EEEEEcC---CCCcceEEEcCCCCeEEEecCCceEEEEEecccc
Confidence            33456666667777777666554     1112222 2222221   1369999999999999999999988888764321


Q ss_pred             CCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCCeEEEEcCCC-cEE-EecCcccCCCCCCCCCc
Q 010579          116 YSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG-VTT-IAGGKWSRGVGHVDGPS  193 (507)
Q Consensus       116 ~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~rIrk~d~~G-Vst-IaGG~~g~~~G~~dg~~  193 (507)
                       +....++...              ....|++++++++|++||+|..+.+|.+++..+ ... ........      ...
T Consensus       101 -~~~~~~~~~~--------------~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~------~~~  159 (302)
T d2p4oa1         101 -GTVETLLTLP--------------DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLA------RSN  159 (302)
T ss_dssp             -SCEEEEEECT--------------TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGS------CSS
T ss_pred             -cceeeccccC--------------CccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccc------eee
Confidence             4444444332              235689999999999999999999999999665 322 22221111      011


Q ss_pred             cCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceeeC----CCCCccceEEEEecce
Q 010579          194 EDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN----YDDTFHLGIFVLVAAA  252 (507)
Q Consensus       194 ~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~~----~~~G~p~gIa~~~~a~  252 (507)
                      ....+..+++|..  +.+.||++++.+++|++++.........    ...+.|.+|+++....
T Consensus       160 ~~~~~~~~ngi~~--~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~  220 (302)
T d2p4oa1         160 SESVFPAANGLKR--FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGN  220 (302)
T ss_dssp             TTCCSCSEEEEEE--ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCC
T ss_pred             ccCcccccccccc--cCCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCC
Confidence            2234567888874  4578999999999999999877543321    2244688888877543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.19  E-value=2.3e-10  Score=110.81  Aligned_cols=139  Identities=18%  Similarity=0.091  Sum_probs=101.8

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  163 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N  163 (507)
                      .|.+||+++||+|||+|..+++|++++++    +....++...                ..|.+|+++++|+|||++..+
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~----g~~~~~~~~~----------------~~~~gla~~~dG~l~v~~~~~   88 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPD----GNQQIHATVE----------------GKVSGLAFTSNGDLVATGWNA   88 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT----CCEEEEEECS----------------SEEEEEEECTTSCEEEEEECT
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCC----CCEEEEEcCC----------------CCcceEEEcCCCCeEEEecCC
Confidence            58899999999999999999999999987    4555554321                368999999999999999998


Q ss_pred             CeEEEEcC---CC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee----
Q 010579          164 MAIRKISD---TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD----  235 (507)
Q Consensus       164 ~rIrk~d~---~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~----  235 (507)
                      +.+.+++.   .+ ++.++...               ....|++++ .+.++++||+|..+++|+++++.+.....    
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~n~i~-~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~  152 (302)
T d2p4oa1          89 DSIPVVSLVKSDGTVETLLTLP---------------DAIFLNGIT-PLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEH  152 (302)
T ss_dssp             TSCEEEEEECTTSCEEEEEECT---------------TCSCEEEEE-ESSSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             ceEEEEEecccccceeeccccC---------------CccccceeE-EccCCCEEeeccccccceeeeccCCcceeEecC
Confidence            88877762   33 44443211               134688988 58999999999999999999988765321    


Q ss_pred             --------CCCCCccceEEEEecceeEEehh
Q 010579          236 --------NYDDTFHLGIFVLVAAAFFGYML  258 (507)
Q Consensus       236 --------~~~~G~p~gIa~~~~a~~~gy~~  258 (507)
                              ......+++|+......++....
T Consensus       153 ~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~  183 (302)
T d2p4oa1         153 PMLARSNSESVFPAANGLKRFGNFLYVSNTE  183 (302)
T ss_dssp             GGGSCSSTTCCSCSEEEEEEETTEEEEEETT
T ss_pred             CccceeeccCcccccccccccCCceeeecCC
Confidence                    01112356777665555554443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.86  E-value=8.8e-08  Score=92.93  Aligned_cols=136  Identities=11%  Similarity=0.047  Sum_probs=97.7

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  163 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N  163 (507)
                      .|.+|+++++|+|+|+..  +.|.++++.   .++++.++....+           ...+.|+++++|++|+|||++..+
T Consensus        60 ~~~~i~~~~dg~l~va~~--~gl~~~d~~---tg~~~~l~~~~~~-----------~~~~~~nd~~vd~~G~iw~~~~~~  123 (295)
T d2ghsa1          60 MGSALAKISDSKQLIASD--DGLFLRDTA---TGVLTLHAELESD-----------LPGNRSNDGRMHPSGALWIGTMGR  123 (295)
T ss_dssp             CEEEEEEEETTEEEEEET--TEEEEEETT---TCCEEEEECSSTT-----------CTTEEEEEEEECTTSCEEEEEEET
T ss_pred             CcEEEEEecCCCEEEEEe--CccEEeecc---cceeeEEeeeecC-----------CCcccceeeEECCCCCEEEEeccc
Confidence            588999999999999864  689999987   4666666543211           235679999999999999998643


Q ss_pred             ------CeEEEEcCCCcEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee--
Q 010579          164 ------MAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD--  235 (507)
Q Consensus       164 ------~rIrk~d~~GVstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~--  235 (507)
                            ..+.+++.+.++.+..                 .+..|+++++..+...||++|+.+++|++++++......  
T Consensus       124 ~~~~~~g~l~~~~~g~~~~~~~-----------------~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~  186 (295)
T d2ghsa1         124 KAETGAGSIYHVAKGKVTKLFA-----------------DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG  186 (295)
T ss_dssp             TCCTTCEEEEEEETTEEEEEEE-----------------EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS
T ss_pred             cccccceeEeeecCCcEEEEee-----------------ccCCcceeeecCCCceEEEeecccceeeEeeeccccccccc
Confidence                  2455555544544432                 255789999766677799999999999999986543211  


Q ss_pred             --------CCCCCccceEEEEecce
Q 010579          236 --------NYDDTFHLGIFVLVAAA  252 (507)
Q Consensus       236 --------~~~~G~p~gIa~~~~a~  252 (507)
                              ....+.|.|++++....
T Consensus       187 ~~~~~~~~~~~~g~pdG~~vD~~Gn  211 (295)
T d2ghsa1         187 KAEVFIDSTGIKGGMDGSVCDAEGH  211 (295)
T ss_dssp             CCEEEEECTTSSSEEEEEEECTTSC
T ss_pred             ceEEEeccCcccccccceEEcCCCC
Confidence                    23456788998876544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.80  E-value=5.5e-08  Score=94.44  Aligned_cols=138  Identities=12%  Similarity=0.128  Sum_probs=91.9

Q ss_pred             CCCeeEEEEcCCCcEEEEeCCC------CeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC
Q 010579           82 GMEPFSVAVSPSGELLVLDSEN------SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN  155 (507)
Q Consensus        82 ~~~P~gIaVd~dG~LYVaDs~n------~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn  155 (507)
                      +..|+++.+|++|+||+++...      +.++++..     +.+..+..                .+..|+|++++++++
T Consensus       102 ~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~-----g~~~~~~~----------------~~~~~Ng~~~s~d~~  160 (295)
T d2ghsa1         102 GNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK-----GKVTKLFA----------------DISIPNSICFSPDGT  160 (295)
T ss_dssp             TEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET-----TEEEEEEE----------------EESSEEEEEECTTSC
T ss_pred             cccceeeEECCCCCEEEEeccccccccceeEeeecC-----CcEEEEee----------------ccCCcceeeecCCCc
Confidence            3579999999999999998542      35566653     33433332                266899999999987


Q ss_pred             -EEEEeCCCCeEEEEcCCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCce
Q 010579          156 -IYIADTMNMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  233 (507)
Q Consensus       156 -IYVADs~N~rIrk~d~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~  233 (507)
                       +|++|+.+++|++++-+. ...+.+....    ..+   .......|.+++ +|.+|+|||+..++++|.+|++++...
T Consensus       161 ~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~----~~~---~~~~~g~pdG~~-vD~~GnlWva~~~~g~V~~~dp~G~~~  232 (295)
T d2ghsa1         161 TGYFVDTKVNRLMRVPLDARTGLPTGKAEV----FID---STGIKGGMDGSV-CDAEGHIWNARWGEGAVDRYDTDGNHI  232 (295)
T ss_dssp             EEEEEETTTCEEEEEEBCTTTCCBSSCCEE----EEE---CTTSSSEEEEEE-ECTTSCEEEEEETTTEEEEECTTCCEE
T ss_pred             eEEEeecccceeeEeeecccccccccceEE----Eec---cCcccccccceE-EcCCCCEEeeeeCCCceEEecCCCcEe
Confidence             999999999999987432 1111010000    000   001123688998 699999999999999999999988665


Q ss_pred             eeCCC-CCccceEEEE
Q 010579          234 SDNYD-DTFHLGIFVL  248 (507)
Q Consensus       234 ~~~~~-~G~p~gIa~~  248 (507)
                      ..... .-.|+.+|+.
T Consensus       233 ~~i~lP~~~~T~~~FG  248 (295)
T d2ghsa1         233 ARYEVPGKQTTCPAFI  248 (295)
T ss_dssp             EEEECSCSBEEEEEEE
T ss_pred             eEecCCCCceEEEEEe
Confidence            44222 2245555554

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.38  E-value=3.3e-05  Score=70.20  Aligned_cols=155  Identities=16%  Similarity=0.276  Sum_probs=103.6

Q ss_pred             EEecCCcEEEEEeCCCCeEEecCcceEeeCCeeeEEeecCCCCCCCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCC
Q 010579           39 VVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYS  117 (507)
Q Consensus        39 va~ag~~~I~~~d~~t~~i~aG~~~~~~~~G~~~~~~~~G~~~~~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g  117 (507)
                      ++....+.|..+|..++++..     .+.             .+..|.+|+++|||. |||++..+++|.+++...   +
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~-----~i~-------------~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t---~   64 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTA-----TIP-------------VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT---N   64 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEE-----EEE-------------CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTT---T
T ss_pred             EEECCCCEEEEEECCCCeEEE-----EEE-------------CCCCceEEEEeCCCCEEEEEECCCCEEEEEECCC---C
Confidence            667778888888988877551     111             113699999999997 889999999999999862   3


Q ss_pred             cc-EEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeCCCCeEEEEcCCC---cEEEecCcccCCCCCCCCC
Q 010579          118 RP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGP  192 (507)
Q Consensus       118 ~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs~N~rIrk~d~~G---VstIaGG~~g~~~G~~dg~  192 (507)
                      +. ..+..                 ...|.+++++++|. ++++......+.+++...   +.++..             
T Consensus        65 ~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  114 (301)
T d1l0qa2          65 NVIATVPA-----------------GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-------------  114 (301)
T ss_dssp             EEEEEEEC-----------------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-------------
T ss_pred             ceeeeeec-----------------cccccccccccccccccccccccceeeecccccceeeeeccc-------------
Confidence            32 22211                 13688999999987 888888888898888544   233311             


Q ss_pred             ccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceeeC-CCCCccceEEEEe
Q 010579          193 SEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN-YDDTFHLGIFVLV  249 (507)
Q Consensus       193 ~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~~-~~~G~p~gIa~~~  249 (507)
                           ...|..+++.++...++++...+..+..++.....+... .....|..++...
T Consensus       115 -----~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (301)
T d1l0qa2         115 -----GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTP  167 (301)
T ss_dssp             -----SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECT
T ss_pred             -----cccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeec
Confidence                 124556665445556778888888888888777655432 2223344444433

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.07  E-value=3.8e-05  Score=69.78  Aligned_cols=117  Identities=16%  Similarity=0.251  Sum_probs=81.9

Q ss_pred             cEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeCCCCeEEEEcCCC
Q 010579           95 ELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDTG  173 (507)
Q Consensus        95 ~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs~N~rIrk~d~~G  173 (507)
                      .+||++..++.|.++|..   ++++...+..+                ..|.+|++++||+ |||++..+++|+++|...
T Consensus         3 ~~yV~~~~~~~v~v~D~~---t~~~~~~i~~g----------------~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t   63 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVT---SNKVTATIPVG----------------SNPMGAVISPDGTKVYVANAHSNDVSIIDTAT   63 (301)
T ss_dssp             EEEEEETTTTEEEEEETT---TTEEEEEEECS----------------SSEEEEEECTTSSEEEEEEGGGTEEEEEETTT
T ss_pred             EEEEEECCCCEEEEEECC---CCeEEEEEECC----------------CCceEEEEeCCCCEEEEEECCCCEEEEEECCC
Confidence            489999999999999976   24433222111                2689999999998 899999999999999544


Q ss_pred             ---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee-CCCCCccceEEEE
Q 010579          174 ---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD-NYDDTFHLGIFVL  248 (507)
Q Consensus       174 ---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~-~~~~G~p~gIa~~  248 (507)
                         +.++..+                  ..|.++++..+...++++...+..++.++.....+.. ......+..+++.
T Consensus        64 ~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (301)
T d1l0qa2          64 NNVIATVPAG------------------SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALS  124 (301)
T ss_dssp             TEEEEEEECS------------------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEEC
T ss_pred             Cceeeeeecc------------------ccccccccccccccccccccccceeeecccccceeeeeccccccceEEEee
Confidence               4444321                  2477888766666789999999999999988766543 2233344444443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.07  E-value=7.4e-05  Score=69.05  Aligned_cols=119  Identities=12%  Similarity=0.074  Sum_probs=80.5

Q ss_pred             CeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeC
Q 010579           84 EPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT  161 (507)
Q Consensus        84 ~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs  161 (507)
                      .|.+|+++|||. ||++....++|+.++.+..  +....+.+..             ..-..|.+|++++||+ ||+++.
T Consensus        38 ~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~--~~~~~~~~~~-------------~~~~~p~~l~~spDg~~l~v~~~  102 (333)
T d1ri6a_          38 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD--DGALTFAAES-------------ALPGSLTHISTDHQGQFVFVGSY  102 (333)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEEECTT--TCCEEEEEEE-------------ECSSCCSEEEECTTSSEEEEEET
T ss_pred             CEeEEEEeCCCCEEEEEECCCCeEEEEEEeCC--CCcEEEeeec-------------ccCCCceEEEEcCCCCEEeeccc
Confidence            688999999997 8899988899988775421  1112222110             0124689999999998 999999


Q ss_pred             CCCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 010579          162 MNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD  231 (507)
Q Consensus       162 ~N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~  231 (507)
                      .+..|+.++...  ........              ..-..|.++++.++...+++++.....|+.++....
T Consensus       103 ~~~~v~~~~~~~~~~~~~~~~~--------------~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~  160 (333)
T d1ri6a_         103 NAGNVSVTRLEDGLPVGVVDVV--------------EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDD  160 (333)
T ss_dssp             TTTEEEEEEEETTEEEEEEEEE--------------CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             CCCceeeeccccccceeccccc--------------CCCccceEEEeeecceeeeccccccceeeEEEeccC
Confidence            898888877433  22111100              011246777765556678999999999999987653

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.03  E-value=4.3e-05  Score=75.37  Aligned_cols=154  Identities=13%  Similarity=0.042  Sum_probs=91.2

Q ss_pred             CCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEe
Q 010579           83 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIAD  160 (507)
Q Consensus        83 ~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVAD  160 (507)
                      ..|++++++|||. ||++|.+.++|++++.+.  .+............    .       =..|.+|+++++|. +||+.
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~--~g~~~~~~~~~~~~----~-------g~gPr~i~f~pdg~~~yv~~  211 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLA--SGEVELVGSVDAPD----P-------GDHPRWVAMHPTGNYLYALM  211 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECT--TSCEEEEEEEECSS----T-------TCCEEEEEECTTSSEEEEEE
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccC--CCceeeccceeecC----C-------CCceEEEEECCCCceEEEec
Confidence            4789999999997 999999999999886432  13332221110000    1       14799999999998 99999


Q ss_pred             CCCCeEEEEcCC--C-c--EEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCe-----EEEEECCC
Q 010579          161 TMNMAIRKISDT--G-V--TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQA-----IREIQLHD  230 (507)
Q Consensus       161 s~N~rIrk~d~~--G-V--stIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~r-----Ir~I~l~~  230 (507)
                      ...+.|.+++.+  . .  .++.......................+..|++.++...|||+.++.+.     |..+....
T Consensus       212 e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~  291 (365)
T d1jofa_         212 EAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD  291 (365)
T ss_dssp             TTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT
T ss_pred             cCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecC
Confidence            999999888732  2 2  222110000000000111122234457788865555579999886554     77776554


Q ss_pred             Cce------ee--CCCCCccceEEEEe
Q 010579          231 DDC------SD--NYDDTFHLGIFVLV  249 (507)
Q Consensus       231 ~~~------~~--~~~~G~p~gIa~~~  249 (507)
                      ...      ..  ....+.|.+|++..
T Consensus       292 ~g~~~~~~~~~~~~~~G~~p~~i~~~p  318 (365)
T d1jofa_         292 CGSIEKQLFLSPTPTSGGHSNAVSPCP  318 (365)
T ss_dssp             TSCEEEEEEEEECSSCCTTCCCEEECT
T ss_pred             CCceeeEeEeeEEEcCCCCccEEEecC
Confidence            321      11  12334688888764

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.91  E-value=0.00045  Score=67.72  Aligned_cols=139  Identities=16%  Similarity=0.095  Sum_probs=82.6

Q ss_pred             CCCCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEec---CCCCccccCCCCcccccCCCcceEEEcCCCC-
Q 010579           81 FGMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAG---SPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-  155 (507)
Q Consensus        81 ~~~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~~vaG---~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-  155 (507)
                      .+..|..++++|+|. +||+....+.|..++.+......+..+..   ...+...  ...........|..|++++||. 
T Consensus       191 ~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~spdG~~  268 (365)
T d1jofa_         191 PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPD--RDPETGKGLYRADVCALTFSGKY  268 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCC--BCTTTSSBSEEEEEEEECTTSSE
T ss_pred             CCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccc--cccccccccCCccceEECCCCCE
Confidence            356899999999987 88999999999998876432111111111   0001100  0001112345678999999998 


Q ss_pred             EEEEeCCCCe-----EEE--EcCCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCC-CeEEEEeCCCCeEEEE
Q 010579          156 IYIADTMNMA-----IRK--ISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSS-CSLLVIDRGNQAIREI  226 (507)
Q Consensus       156 IYVADs~N~r-----Irk--~d~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~-G~LyVaD~gn~rIr~I  226 (507)
                      |||+..+++.     |..  ++..| +........           ....-..|.+|++.+.+ ..|||++...+.|..+
T Consensus       269 lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~-----------~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~  337 (365)
T d1jofa_         269 MFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP-----------TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIY  337 (365)
T ss_dssp             EEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE-----------CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEE
T ss_pred             EEEEcccCCCccceEEEEEEecCCCceeeEeEeeE-----------EEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEE
Confidence            8999765332     443  44555 332211000           00112368899864434 4599999999999998


Q ss_pred             ECCCCc
Q 010579          227 QLHDDD  232 (507)
Q Consensus       227 ~l~~~~  232 (507)
                      ..+.+.
T Consensus       338 ~~~~~~  343 (365)
T d1jofa_         338 RWKDEF  343 (365)
T ss_dssp             EEETTE
T ss_pred             EEeCCc
Confidence            776543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.91  E-value=4.9e-05  Score=75.28  Aligned_cols=137  Identities=13%  Similarity=0.080  Sum_probs=90.4

Q ss_pred             CCeeEEEE--cCCCc--EEEEeC--CCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCE
Q 010579           83 MEPFSVAV--SPSGE--LLVLDS--ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNI  156 (507)
Q Consensus        83 ~~P~gIaV--d~dG~--LYVaDs--~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnI  156 (507)
                      ..|+||.+  +.+|.  |||.+.  .+.+|-.|..+..  +...+..+.-           ....+..|++|++..+|.+
T Consensus        97 f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~--~~~l~~~~~v-----------~~~~~~~pNDv~~~~~g~f  163 (340)
T d1v04a_          97 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEE--EKSLLHLKTI-----------RHKLLPSVNDIVAVGPEHF  163 (340)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETT--TTEEEEEEEE-----------CCTTCSSEEEEEEEETTEE
T ss_pred             eeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCC--CCeEEEEeec-----------CCccccCccceEEecCCCE
Confidence            47999987  55664  788875  4566665554311  2122222211           1235788999999999999


Q ss_pred             EEEeCC-----------------CCeEEEEcCCCcEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCC
Q 010579          157 YIADTM-----------------NMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG  219 (507)
Q Consensus       157 YVADs~-----------------N~rIrk~d~~GVstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~g  219 (507)
                      |+++..                 ...|..++...+..++.                 .+..|+||++.++...|||+++.
T Consensus       164 y~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~-----------------~l~~pNGI~~s~d~~~lyVa~t~  226 (340)
T d1v04a_         164 YATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE-----------------GFDFANGINISPDGKYVYIAELL  226 (340)
T ss_dssp             EEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEE-----------------EESSEEEEEECTTSSEEEEEEGG
T ss_pred             EEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcC-----------------CCCccceeEECCCCCEEEEEeCC
Confidence            999632                 22455555555544432                 25689999975556789999999


Q ss_pred             CCeEEEEECCCCceee----CCCCCccceEEEEe
Q 010579          220 NQAIREIQLHDDDCSD----NYDDTFHLGIFVLV  249 (507)
Q Consensus       220 n~rIr~I~l~~~~~~~----~~~~G~p~gIa~~~  249 (507)
                      .++|+++++.++....    ..-.+.|..|.++.
T Consensus       227 ~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~  260 (340)
T d1v04a_         227 AHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDP  260 (340)
T ss_dssp             GTEEEEEEECTTSCEEEEEEEECSSEEEEEEECT
T ss_pred             CCeEEEEEeCCCcccceEEEecCCCCCCccEEec
Confidence            9999999988754221    24567788998874

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=0.00028  Score=65.00  Aligned_cols=124  Identities=9%  Similarity=-0.028  Sum_probs=79.8

Q ss_pred             cEEEEeCCCCeEEEEeCCCCCCCccEEEe--cCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeCCCCeEEEEc-
Q 010579           95 ELLVLDSENSNIYKISTSLSPYSRPKLVA--GSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKIS-  170 (507)
Q Consensus        95 ~LYVaDs~n~rI~ki~~~g~~~g~i~~va--G~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs~N~rIrk~d-  170 (507)
                      .+||+.+.+++|++++.+..  +...++-  ..                -..|.+|+++|||+ |||+....++|++++ 
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~--~~l~~~~~~~~----------------~~~v~~la~spDG~~L~v~~~~d~~i~~~~i   66 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHE--GALTLTQVVDV----------------PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI   66 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTT--SCEEEEEEEEC----------------SSCCCCEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EEEEECCCCCcEEEEEEcCC--CCeEEEEEEcC----------------CCCEeEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            58999999999999987521  2222221  11                13688999999998 899999888888766 


Q ss_pred             -CCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee----CCCCCccce
Q 010579          171 -DTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD----NYDDTFHLG  244 (507)
Q Consensus       171 -~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~----~~~~G~p~g  244 (507)
                       .++ ..++.+..              ..-..|.+|++.++...||+++..+..|+.+.........    ......+.+
T Consensus        67 ~~~~~~~~~~~~~--------------~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  132 (333)
T d1ri6a_          67 APDDGALTFAAES--------------ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHS  132 (333)
T ss_dssp             CTTTCCEEEEEEE--------------ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCC
T ss_pred             eCCCCcEEEeeec--------------ccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceE
Confidence             333 33332211              0123688898655556699999999999988766544221    223334555


Q ss_pred             EEEEec
Q 010579          245 IFVLVA  250 (507)
Q Consensus       245 Ia~~~~  250 (507)
                      +++..+
T Consensus       133 v~~s~d  138 (333)
T d1ri6a_         133 ANISPD  138 (333)
T ss_dssp             CEECTT
T ss_pred             EEeeec
Confidence            555444

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.66  E-value=0.0021  Score=58.47  Aligned_cols=142  Identities=11%  Similarity=0.091  Sum_probs=84.9

Q ss_pred             ecCCcEEEEEeCCCCeEEecCcceEeeCCeeeEEeecCCCCCCCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCcc
Q 010579           41 SALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRP  119 (507)
Q Consensus        41 ~ag~~~I~~~d~~t~~i~aG~~~~~~~~G~~~~~~~~G~~~~~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i  119 (507)
                      ....+.|..+|..+.++..               .+.....+..|.+|+++|||. |||+...++.|.+++...   ++.
T Consensus         7 ~~~d~~v~v~D~~s~~~~~---------------~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t---~~~   68 (337)
T d1pbyb_           7 PARPDKLVVIDTEKMAVDK---------------VITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT---GET   68 (337)
T ss_dssp             EETTTEEEEEETTTTEEEE---------------EEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT---CCE
T ss_pred             EcCCCEEEEEECCCCeEEE---------------EEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCC---CcE
Confidence            3445778888888876551               111122234689999999997 789999899999999873   444


Q ss_pred             EEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeC-----------CCCeEEEEcCCC---cEEEecCcccC
Q 010579          120 KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT-----------MNMAIRKISDTG---VTTIAGGKWSR  184 (507)
Q Consensus       120 ~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs-----------~N~rIrk~d~~G---VstIaGG~~g~  184 (507)
                      .........          ......|.+++++++|+ +|++..           ...++..++...   +.++..     
T Consensus        69 ~~~~~~~~~----------~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----  133 (337)
T d1pbyb_          69 LGRIDLSTP----------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-----  133 (337)
T ss_dssp             EEEEECCBT----------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-----
T ss_pred             EEEEecCCC----------cccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-----
Confidence            322211100          11234678999999987 777754           234555666433   222211     


Q ss_pred             CCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 010579          185 GVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD  231 (507)
Q Consensus       185 ~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~  231 (507)
                                   -..|.++++.++...+|+++   +.+..++....
T Consensus       134 -------------~~~~~~~~~s~dg~~l~~~~---~~~~~~d~~~~  164 (337)
T d1pbyb_         134 -------------PRQITMLAWARDGSKLYGLG---RDLHVMDPEAG  164 (337)
T ss_dssp             -------------CSSCCCEEECTTSSCEEEES---SSEEEEETTTT
T ss_pred             -------------cCCceEEEEcCCCCEEEEEc---CCcceeeeecC
Confidence                         12467787644445577764   34556665543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.56  E-value=0.0045  Score=61.54  Aligned_cols=175  Identities=10%  Similarity=-0.001  Sum_probs=103.6

Q ss_pred             EeEEEecCCcEEEEEeCCCCeEEecCcceEeeCCeeeEEeecCCCCCCCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCC
Q 010579           36 VSNVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLS  114 (507)
Q Consensus        36 l~~va~ag~~~I~~~d~~t~~i~aG~~~~~~~~G~~~~~~~~G~~~~~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~  114 (507)
                      +..+.....+.|+.+|..++++.     ..+..|             ..|++|+++|||. ||++. ..+.|.+++... 
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~-----~~~~~g-------------~~~~~v~fSpDG~~l~~~s-~dg~v~~~d~~t-   92 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIK-----TVLDTG-------------YAVHISRLSASGRYLFVIG-RDGKVNMIDLWM-   92 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEE-----EEEECS-------------SCEEEEEECTTSCEEEEEE-TTSEEEEEETTS-
T ss_pred             EEEEEEcCCCEEEEEECCCCcEE-----EEEeCC-------------CCeeEEEECCCCCEEEEEc-CCCCEEEEEeeC-
Confidence            33356666677888888777665     112111             2599999999997 66665 457999999763 


Q ss_pred             CCCccEEEecCCCCccccCCCCcccccCCCcceEEEc----CCCC-EEEEeCCCCeEEEEcCCC---cEEEecCcccCCC
Q 010579          115 PYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVD----DRGN-IYIADTMNMAIRKISDTG---VTTIAGGKWSRGV  186 (507)
Q Consensus       115 ~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd----~dGn-IYVADs~N~rIrk~d~~G---VstIaGG~~g~~~  186 (507)
                        +....+.-..              ....|.+++++    +||+ |||+....+.|+.+|...   +.++.+.....  
T Consensus        93 --~~~~~~~~i~--------------~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~--  154 (432)
T d1qksa2          93 --KEPTTVAEIK--------------IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY--  154 (432)
T ss_dssp             --SSCCEEEEEE--------------CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECT--
T ss_pred             --CCceEEEEEe--------------cCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccc--
Confidence              2221111000              12356677665    5898 789999999999999543   44444322110  


Q ss_pred             CCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCcee---eCCCCCccceEEEEecce
Q 010579          187 GHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS---DNYDDTFHLGIFVLVAAA  252 (507)
Q Consensus       187 G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~---~~~~~G~p~gIa~~~~a~  252 (507)
                         +. .....-..+..|++..+...++|+....+.|..++.....+.   .......|.++++.....
T Consensus       155 ---~~-~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~  219 (432)
T d1qksa2         155 ---DE-QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHR  219 (432)
T ss_dssp             ---TT-CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSC
T ss_pred             ---cc-eeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCC
Confidence               00 000011234456654455567888888899999987664432   222334566777766543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=97.50  E-value=0.00034  Score=64.29  Aligned_cols=116  Identities=9%  Similarity=0.017  Sum_probs=76.7

Q ss_pred             EEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeCCCCe
Q 010579           87 SVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMA  165 (507)
Q Consensus        87 gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs~N~r  165 (507)
                      |++++++|+.+++-...+.|.++|..   .+++...+-.+       ++       ..|.+|++++||. |||++..+++
T Consensus         1 g~a~~~~~~~l~~~~~~~~v~v~D~~---t~~~~~t~~~~-------~~-------~~p~~l~~spDG~~l~v~~~~~~~   63 (346)
T d1jmxb_           1 GPALKAGHEYMIVTNYPNNLHVVDVA---SDTVYKSCVMP-------DK-------FGPGTAMMAPDNRTAYVLNNHYGD   63 (346)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETT---TTEEEEEEECS-------SC-------CSSCEEEECTTSSEEEEEETTTTE
T ss_pred             CccCCCCCcEEEEEcCCCEEEEEECC---CCCEEEEEEcC-------CC-------CCcceEEECCCCCEEEEEECCCCc
Confidence            46788888888887778899999987   34433221111       00       2588999999998 8999999999


Q ss_pred             EEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeC-----------CCCeEEEEECCC
Q 010579          166 IRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR-----------GNQAIREIQLHD  230 (507)
Q Consensus       166 Irk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~-----------gn~rIr~I~l~~  230 (507)
                      |..+|...   +.++..+..           .......|.++++.++...|||++.           ....|..++...
T Consensus        64 v~~~d~~t~~~~~~~~~~~~-----------~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~  131 (346)
T d1jmxb_          64 IYGIDLDTCKNTFHANLSSV-----------PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD  131 (346)
T ss_dssp             EEEEETTTTEEEEEEESCCS-----------TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG
T ss_pred             EEEEeCccCeeeeeeccccc-----------ccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccc
Confidence            99999543   334422110           1122346889987555567888864           345666666544

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.48  E-value=0.00049  Score=67.81  Aligned_cols=70  Identities=14%  Similarity=0.218  Sum_probs=52.1

Q ss_pred             CCCCeeEEEEcCCCcEEEEeCC-----------------CCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCC
Q 010579           81 FGMEPFSVAVSPSGELLVLDSE-----------------NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMN  143 (507)
Q Consensus        81 ~~~~P~gIaVd~dG~LYVaDs~-----------------n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn  143 (507)
                      ....|++|++..+|.+|+++..                 .+.|+.++.     +...+++.                .+.
T Consensus       148 ~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~-----~~~~~~~~----------------~l~  206 (340)
T d1v04a_         148 LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-----NDVRVVAE----------------GFD  206 (340)
T ss_dssp             TCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS-----SCEEEEEE----------------EES
T ss_pred             cccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC-----CceEEEcC----------------CCC
Confidence            4468999999999999999632                 234455543     22333321                267


Q ss_pred             CcceEEEcCCCC-EEEEeCCCCeEEEEcC
Q 010579          144 HPKGLAVDDRGN-IYIADTMNMAIRKISD  171 (507)
Q Consensus       144 ~P~GIaVd~dGn-IYVADs~N~rIrk~d~  171 (507)
                      .|+||++++|++ ||||++...+|++++-
T Consensus       207 ~pNGI~~s~d~~~lyVa~t~~~~i~~y~~  235 (340)
T d1v04a_         207 FANGINISPDGKYVYIAELLAHKIHVYEK  235 (340)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             ccceeEECCCCCEEEEEeCCCCeEEEEEe
Confidence            899999999986 9999999999999883

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.36  E-value=0.0021  Score=65.42  Aligned_cols=79  Identities=19%  Similarity=0.326  Sum_probs=53.1

Q ss_pred             CeeeEEeecCCCCCCCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceE
Q 010579           69 GYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGL  148 (507)
Q Consensus        69 G~~~~~~~~G~~~~~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GI  148 (507)
                      ++.++....+   +..|++|++.|||+|||++...++|++++..+   +....+.+...-. ....|      -..-.||
T Consensus        16 ~f~~~~ia~~---L~~P~~la~~pdg~llVter~~G~i~~v~~~~---g~~~~i~~~~~~~-~~~~g------e~GLLgi   82 (450)
T d1crua_          16 NFDKKVILSN---LNKPHALLWGPDNQIWLTERATGKILRVNPES---GSVKTVFQVPEIV-NDADG------QNGLLGF   82 (450)
T ss_dssp             TSCEEEEECC---CSSEEEEEECTTSCEEEEETTTCEEEEECTTT---CCEEEEEECTTCC-CCTTS------SCSEEEE
T ss_pred             CcEEEEEECC---CCCceEEEEeCCCeEEEEEecCCEEEEEECCC---CcEeecccCCccc-cccCC------CCceeeE
Confidence            4555555543   45899999999999999998889999998763   5556655543111 00011      1234589


Q ss_pred             EEcCC----CCEEEEe
Q 010579          149 AVDDR----GNIYIAD  160 (507)
Q Consensus       149 aVd~d----GnIYVAD  160 (507)
                      |++++    +.|||+-
T Consensus        83 a~~Pdf~~n~~iYvsy   98 (450)
T d1crua_          83 AFHPDFKNNPYIYISG   98 (450)
T ss_dssp             EECTTTTTSCEEEEEE
T ss_pred             EeCCCCccCCEEEEEE
Confidence            99984    7799974

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=97.35  E-value=0.0031  Score=57.47  Aligned_cols=94  Identities=16%  Similarity=0.196  Sum_probs=61.6

Q ss_pred             EEecCCcEEEEEeCCCCeEEecCcceEeeCCeeeEEeecCCCCCCCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCC
Q 010579           39 VVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYS  117 (507)
Q Consensus        39 va~ag~~~I~~~d~~t~~i~aG~~~~~~~~G~~~~~~~~G~~~~~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g  117 (507)
                      +.......|..+|..++++..     ...        ..   ....|.+|+++|||. |||++..+++|+.++...   +
T Consensus        12 ~~~~~~~~v~v~D~~t~~~~~-----t~~--------~~---~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t---~   72 (346)
T d1jmxb_          12 IVTNYPNNLHVVDVASDTVYK-----SCV--------MP---DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT---C   72 (346)
T ss_dssp             EEEETTTEEEEEETTTTEEEE-----EEE--------CS---SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT---T
T ss_pred             EEEcCCCEEEEEECCCCCEEE-----EEE--------cC---CCCCcceEEECCCCCEEEEEECCCCcEEEEeCcc---C
Confidence            344455778888988877651     111        01   012589999999986 789999999999999862   3


Q ss_pred             ccE-EEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeC
Q 010579          118 RPK-LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT  161 (507)
Q Consensus       118 ~i~-~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs  161 (507)
                      +.. .+.... .         .......|.++++++||. +||++.
T Consensus        73 ~~~~~~~~~~-~---------~~~~~~~~~~v~~s~DG~~l~v~~~  108 (346)
T d1jmxb_          73 KNTFHANLSS-V---------PGEVGRSMYSFAISPDGKEVYATVN  108 (346)
T ss_dssp             EEEEEEESCC-S---------TTEEEECSSCEEECTTSSEEEEEEE
T ss_pred             eeeeeecccc-c---------ccccCCceEEEEEecCCCEEEEEec
Confidence            332 221111 0         111235689999999997 888865

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=97.33  E-value=0.013  Score=54.83  Aligned_cols=144  Identities=10%  Similarity=0.018  Sum_probs=81.9

Q ss_pred             CCcEEEEEeCCCCeEEecCcceEeeCCeeeEEeecCCCCCCCeeEEEEcCCCc-EEEEeCC---------CCeEEEEeCC
Q 010579           43 LVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDSE---------NSNIYKISTS  112 (507)
Q Consensus        43 g~~~I~~~d~~t~~i~aG~~~~~~~~G~~~~~~~~G~~~~~~P~gIaVd~dG~-LYVaDs~---------n~rI~ki~~~  112 (507)
                      ....||.+|..++++.     ..+..|              .+.+++++|||. ||++...         .+.|..++..
T Consensus        45 ~~~~v~v~D~~tg~~~-----~~~~~~--------------~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~  105 (373)
T d2madh_          45 AIIQQWVLDAGSGSIL-----GHVNGG--------------FLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV  105 (373)
T ss_pred             CCceEEEEECCCCCEE-----EEEeCC--------------CCccEEEcCCCCEEEEEeecCCcccccccceEEEEEECC
Confidence            3467888887776655     111111              123799999996 7777543         3567888776


Q ss_pred             CCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeCC-CCeEEEEcCCCcEEEecCcccCCCCCCC
Q 010579          113 LSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTM-NMAIRKISDTGVTTIAGGKWSRGVGHVD  190 (507)
Q Consensus       113 g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs~-N~rIrk~d~~GVstIaGG~~g~~~G~~d  190 (507)
                      +   ++.......+        ..........|.+++++++|. +||+... .+.+..++......+             
T Consensus       106 t---~~~~~~~~~~--------~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~-------------  161 (373)
T d2madh_         106 T---FLPIADIELP--------DAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDD-------------  161 (373)
T ss_pred             C---CcEEEEEecC--------CcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEE-------------
Confidence            3   3332221111        001112345788999999887 6666543 345555554332211             


Q ss_pred             CCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCcee
Q 010579          191 GPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS  234 (507)
Q Consensus       191 g~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~  234 (507)
                           .....|.++++.+....+|++....+.+..++.....+.
T Consensus       162 -----~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~  200 (373)
T d2madh_         162 -----QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAG  200 (373)
T ss_pred             -----EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceee
Confidence                 112245566655555667888888888888877665543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.12  E-value=0.02  Score=55.71  Aligned_cols=169  Identities=12%  Similarity=0.019  Sum_probs=98.3

Q ss_pred             EEecCCcEEEEEeCCCCeEEecCcceEeeCCeeeEEeecCCCCCCCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCC
Q 010579           39 VVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYS  117 (507)
Q Consensus        39 va~ag~~~I~~~d~~t~~i~aG~~~~~~~~G~~~~~~~~G~~~~~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g  117 (507)
                      +....++.|...|..++++.     ..+.         .    +..|++|+++|||. ||++. ..+.|++++.++   +
T Consensus        36 V~~~~dg~v~vwD~~t~~~~-----~~l~---------~----g~~~~~vafSPDGk~l~~~~-~d~~v~vwd~~t---~   93 (426)
T d1hzua2          36 VTLRDAGQIALVDGDSKKIV-----KVID---------T----GYAVHISRMSASGRYLLVIG-RDARIDMIDLWA---K   93 (426)
T ss_dssp             EEETTTTEEEEEETTTCSEE-----EEEE---------C----CSSEEEEEECTTSCEEEEEE-TTSEEEEEETTS---S
T ss_pred             EEEcCCCEEEEEECCCCcEE-----EEEe---------C----CCCeeEEEECCCCCEEEEEe-CCCCEEEEEccC---C
Confidence            56667788888888877655     1111         1    12599999999998 55665 457999999873   3


Q ss_pred             ccEEEecCCCCccccCCCCcccccCCCcceEEEc----CCCC-EEEEeCCCCeEEEEcCCC---cEEEecCcccCCCCCC
Q 010579          118 RPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVD----DRGN-IYIADTMNMAIRKISDTG---VTTIAGGKWSRGVGHV  189 (507)
Q Consensus       118 ~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd----~dGn-IYVADs~N~rIrk~d~~G---VstIaGG~~g~~~G~~  189 (507)
                      +...++-..              ....|.+++++    +||+ ||++....+.|+.+|...   +.++.+.....     
T Consensus        94 ~~~~~~~i~--------------~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~-----  154 (426)
T d1hzua2          94 EPTKVAEIK--------------IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV-----  154 (426)
T ss_dssp             SCEEEEEEE--------------CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECS-----
T ss_pred             ceeEEEEEe--------------CCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCc-----
Confidence            322221100              11245666665    5887 789988899999998544   34443321110     


Q ss_pred             CCCccCccC-CCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCce---eeCCCCCccceEEEEec
Q 010579          190 DGPSEDAKF-SNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC---SDNYDDTFHLGIFVLVA  250 (507)
Q Consensus       190 dg~~~~a~f-~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~---~~~~~~G~p~gIa~~~~  250 (507)
                      +.  ..... ..+..++..++...+++++.+.+.|..+.......   ........+.++++...
T Consensus       155 ~~--~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (426)
T d1hzua2         155 DT--QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSS  217 (426)
T ss_dssp             SS--CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTT
T ss_pred             cc--eeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCC
Confidence            00  00000 12344555556667888899999998887665332   11222234556665544

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.08  E-value=0.0054  Score=55.59  Aligned_cols=98  Identities=10%  Similarity=0.032  Sum_probs=63.3

Q ss_pred             CCcceEEEcCCCC-EEEEeCCCCeEEEEcCC-C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeC
Q 010579          143 NHPKGLAVDDRGN-IYIADTMNMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR  218 (507)
Q Consensus       143 n~P~GIaVd~dGn-IYVADs~N~rIrk~d~~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~  218 (507)
                      ..|.+|++++||+ |||+...++.|.++|.. +  +.++....            .......+.++++.++...||++..
T Consensus        34 ~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~------------~~~~~~~~~~v~~s~dg~~l~~~~~  101 (337)
T d1pbyb_          34 PTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLST------------PEERVKSLFGAALSPDGKTLAIYES  101 (337)
T ss_dssp             TCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB------------TTEEEECTTCEEECTTSSEEEEEEE
T ss_pred             CCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCC------------CcccccceeeEEEcCCCcEEEEeec
Confidence            3688999999998 78999999999999943 3  33332211            1112346778887666667777754


Q ss_pred             -----------CCCeEEEEECCCCceeeC-CCCCccceEEEEecce
Q 010579          219 -----------GNQAIREIQLHDDDCSDN-YDDTFHLGIFVLVAAA  252 (507)
Q Consensus       219 -----------gn~rIr~I~l~~~~~~~~-~~~G~p~gIa~~~~a~  252 (507)
                                 ...++..++.....+... .....+.++++...+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~  147 (337)
T d1pbyb_         102 PVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGS  147 (337)
T ss_dssp             EEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSS
T ss_pred             CCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCC
Confidence                       456777787777665442 2233466776655433

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=96.83  E-value=0.019  Score=58.30  Aligned_cols=163  Identities=9%  Similarity=-0.028  Sum_probs=88.2

Q ss_pred             cceEeEEEecCCcEEEEEeCCCCeEEecCcceEeeCCeeeEEeecCCCCCCCeeEEEEcCCCc-EEEEeCCCCeEEE---
Q 010579           33 AGIVSNVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDSENSNIYK---  108 (507)
Q Consensus        33 sG~l~~va~ag~~~I~~~d~~t~~i~aG~~~~~~~~G~~~~~~~~G~~~~~~P~gIaVd~dG~-LYVaDs~n~rI~k---  108 (507)
                      +|...-+++..+.+|.++|+.+.++.              ....  ...+..|++++++++|+ +||+....+.+..   
T Consensus        82 DGr~lfV~d~~~~rVavIDl~t~k~~--------------~ii~--iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~d  145 (441)
T d1qnia2          82 DGKYLFINDKANTRVARIRLDIMKTD--------------KITH--IPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPND  145 (441)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEE--------------EEEE--CTTCCCEEEEEECCSSBCCEEEEEECSCEESSCS
T ss_pred             CCCEEEEEcCCCCEEEEEECCCCcEe--------------eEEe--cCCCCCccceEEeccCCEEEEEeccCCcccccCc
Confidence            45544467777778888887776543              0000  11123699999999886 7888766555532   


Q ss_pred             ---------------EeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeCCCCeEEEEcC-
Q 010579          109 ---------------ISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISD-  171 (507)
Q Consensus       109 ---------------i~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs~N~rIrk~d~-  171 (507)
                                     ++.....  ....+.-         +        ..|.+++++++|. +|++..+.+.+..++. 
T Consensus       146 g~~~~~~~~~~~~~~iD~~t~~--v~~qI~v---------~--------~~p~~v~~spdGk~a~vt~~nse~~~~id~~  206 (441)
T d1qnia2         146 GTDFSLDNSYTMFTAIDAETMD--VAWQVIV---------D--------GNLDNTDADYTGKYATSTCYNSERAVDLAGT  206 (441)
T ss_dssp             SSCCCGGGEEEEEEEEETTTCS--EEEEEEE---------S--------SCCCCEEECSSSSEEEEEESCTTCCSSHHHH
T ss_pred             ccccccccccceEEeecCccce--eeEEEec---------C--------CCccceEECCCCCEEEEEecCCCceEEEecc
Confidence                           3322100  0000000         0        2688999999998 8888776554433331 


Q ss_pred             -CC-cEEEec------------CcccCCCC----CCCCCccC------ccCCCCceEEEEcCCCeEEEEeCCCCeEEEEE
Q 010579          172 -TG-VTTIAG------------GKWSRGVG----HVDGPSED------AKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQ  227 (507)
Q Consensus       172 -~G-VstIaG------------G~~g~~~G----~~dg~~~~------a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~  227 (507)
                       .. +.++..            |+.-..++    ..++....      -.=.+|+||.+.++...|||+....+.|..|+
T Consensus       207 t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d  286 (441)
T d1qnia2         207 MRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIA  286 (441)
T ss_dssp             TCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEE
T ss_pred             CcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEE
Confidence             10 111100            00000000    00000000      01146999997555556999999999999999


Q ss_pred             CCC
Q 010579          228 LHD  230 (507)
Q Consensus       228 l~~  230 (507)
                      ...
T Consensus       287 ~~k  289 (441)
T d1qnia2         287 IDK  289 (441)
T ss_dssp             GGG
T ss_pred             eeh
Confidence            765

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.80  E-value=0.016  Score=54.95  Aligned_cols=102  Identities=11%  Similarity=-0.018  Sum_probs=65.4

Q ss_pred             cCCcEEEEEeCCCCeEEecCcceEeeCCeeeEEeecCCCCCCCeeEEEEcCCCc-EEEEeCC---------CCeEEEEeC
Q 010579           42 ALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDSE---------NSNIYKIST  111 (507)
Q Consensus        42 ag~~~I~~~d~~t~~i~aG~~~~~~~~G~~~~~~~~G~~~~~~P~gIaVd~dG~-LYVaDs~---------n~rI~ki~~  111 (507)
                      .+...||.+|..+++...     ....+             ..| .+++.+||. ||++...         .+.|..|+.
T Consensus        43 ~g~~~~~~~d~~~~~~~~-----~~~~~-------------~~~-~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~  103 (368)
T d1mdah_          43 AGTTENWVSCAGCGVTLG-----HSLGA-------------FLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDP  103 (368)
T ss_dssp             CSSEEEEEEETTTTEEEE-----EEEEC-------------TTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECT
T ss_pred             CCcceEEEEeCCCCcEEE-----EEeCC-------------CCC-cceECCCCCEEEEEcccCccccccccCCeEEEEEC
Confidence            455789999988887651     11111             124 689999986 8887642         245999987


Q ss_pred             CCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeCCCCeEEEEcCCC
Q 010579          112 SLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDTG  173 (507)
Q Consensus       112 ~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs~N~rIrk~d~~G  173 (507)
                      .+   +++...+..+.+.        .......|.++++++||. |||++...+.|+.+|...
T Consensus       104 ~t---~~~~~~i~~p~~~--------~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~  155 (368)
T d1mdah_         104 VT---FLPIADIELPDAP--------RFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPG  155 (368)
T ss_dssp             TT---CCEEEEEEETTSC--------SCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETT
T ss_pred             CC---CcEeeeecCCccc--------eecccCCccceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence            63   3333222211110        001134688999999997 999998888999999544

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.44  E-value=0.059  Score=49.38  Aligned_cols=148  Identities=10%  Similarity=0.013  Sum_probs=86.0

Q ss_pred             CcEEEEEeCCCCeEEecCcceEeeCCeeeEEeecCCCCCCCeeEEEEcCCCc-EEEEeCC---------CCeEEEEeCCC
Q 010579           44 VKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDSE---------NSNIYKISTSL  113 (507)
Q Consensus        44 ~~~I~~~d~~t~~i~aG~~~~~~~~G~~~~~~~~G~~~~~~P~gIaVd~dG~-LYVaDs~---------n~rI~ki~~~g  113 (507)
                      ..+||.+|..+++...     ....|             ..| +++++|||. |||++..         .+.|++++...
T Consensus        27 ~~~v~v~D~~tg~~~~-----~~~~g-------------~~~-~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t   87 (355)
T d2bbkh_          27 VTQQFVIDGEAGRVIG-----MIDGG-------------FLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT   87 (355)
T ss_dssp             SEEEEEEETTTTEEEE-----EEEEC-------------SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             cCeEEEEECCCCcEEE-----EEECC-------------CCC-ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCC
Confidence            4679999988876551     11111             134 699999997 8887642         35799998863


Q ss_pred             CCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeCC-CCeEEEEcCCC---cEEEecCcccCCCCC
Q 010579          114 SPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTM-NMAIRKISDTG---VTTIAGGKWSRGVGH  188 (507)
Q Consensus       114 ~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs~-N~rIrk~d~~G---VstIaGG~~g~~~G~  188 (507)
                         ++.....-.....        .......|.+++++++|. +||++.. ...+..++...   +.++......     
T Consensus        88 ---~~~~~~~~~~~~~--------~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  151 (355)
T d2bbkh_          88 ---LLPTADIELPDAP--------RFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCY-----  151 (355)
T ss_dssp             ---CCEEEEEEETTCC--------CCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE-----
T ss_pred             ---CCEEEEEecCCcc--------eeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcc-----
Confidence               3332221111000        011235799999999987 8888865 45666777433   3444321100     


Q ss_pred             CCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 010579          189 VDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD  231 (507)
Q Consensus       189 ~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~  231 (507)
                           .......+..+++..+...+++.....+.+..++....
T Consensus       152 -----~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~  189 (355)
T d2bbkh_         152 -----HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVF  189 (355)
T ss_dssp             -----EEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCC
T ss_pred             -----eEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccc
Confidence                 00011233455655566677777777777777776543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.40  E-value=0.042  Score=51.83  Aligned_cols=49  Identities=8%  Similarity=0.033  Sum_probs=36.2

Q ss_pred             CCceEEEEcCCC--eEEEEeCCCCeEEEEECCCCceeeCCC-CCccceEEEEe
Q 010579          200 NDFDVVYVGSSC--SLLVIDRGNQAIREIQLHDDDCSDNYD-DTFHLGIFVLV  249 (507)
Q Consensus       200 ~P~gIa~vd~~G--~LyVaD~gn~rIr~I~l~~~~~~~~~~-~G~p~gIa~~~  249 (507)
                      .|.++++ ..+|  .||++..+.+.|+.++..++.+...-. ...|.+|++..
T Consensus       315 ~~~~~a~-spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P~~l~~~~  366 (368)
T d1mdah_         315 DSDAIIA-AQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQN  366 (368)
T ss_dssp             EECEEEE-CCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECCC
T ss_pred             ceeEEEE-CCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCCCCEEEEec
Confidence            4677875 5555  389999999999999998877654333 33599998754

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.07  E-value=0.057  Score=49.45  Aligned_cols=115  Identities=17%  Similarity=0.124  Sum_probs=70.4

Q ss_pred             EEcCCCc-EEEEeCC----CCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeCC
Q 010579           89 AVSPSGE-LLVLDSE----NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTM  162 (507)
Q Consensus        89 aVd~dG~-LYVaDs~----n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs~  162 (507)
                      +..|||. +||++..    .+.|++++...   +++...+-.     |           ..| ++++++||+ |||++..
T Consensus         8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~t---g~~~~~~~~-----g-----------~~~-~~a~SpDg~~l~v~~~~   67 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHFAAVTQQFVIDGEA---GRVIGMIDG-----G-----------FLP-NPVVADDGSFIAHASTV   67 (355)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTT---TEEEEEEEE-----C-----------SSC-EEEECTTSSCEEEEEEE
T ss_pred             eeCCCCCEEEEEecccCCCcCeEEEEECCC---CcEEEEEEC-----C-----------CCC-ceEEcCCCCEEEEEeCC
Confidence            3457775 8898754    34699998862   433221111     1           123 799999998 9998753


Q ss_pred             ---------CCeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCC-CCeEEEEECC
Q 010579          163 ---------NMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG-NQAIREIQLH  229 (507)
Q Consensus       163 ---------N~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~g-n~rIr~I~l~  229 (507)
                               .+.|+++|...   +.++.....          ........|.++++.++...++|++.. ...++.++..
T Consensus        68 ~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~----------~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~  137 (355)
T d2bbkh_          68 FSRIARGERTDYVEVFDPVTLLPTADIELPDA----------PRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE  137 (355)
T ss_dssp             EEETTEEEEEEEEEEECTTTCCEEEEEEETTC----------CCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETT
T ss_pred             CccccccCCCCEEEEEECCCCCEEEEEecCCc----------ceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecC
Confidence                     35799999544   344432110          011223568888877777778998864 4567777776


Q ss_pred             CCce
Q 010579          230 DDDC  233 (507)
Q Consensus       230 ~~~~  233 (507)
                      ....
T Consensus       138 ~~~~  141 (355)
T d2bbkh_         138 GKAF  141 (355)
T ss_dssp             TTEE
T ss_pred             CCcE
Confidence            6543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=95.86  E-value=0.02  Score=58.19  Aligned_cols=68  Identities=16%  Similarity=0.283  Sum_probs=48.8

Q ss_pred             CCeeEEEEc--CCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEE
Q 010579           83 MEPFSVAVS--PSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYI  158 (507)
Q Consensus        83 ~~P~gIaVd--~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYV  158 (507)
                      ..|.....+  +||. |||+|..++||.+|+..   +.+..-++-.+              ....|.|++++++|+ +||
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~---t~k~~~ii~iP--------------~g~gphgi~~spdg~t~YV  132 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLD---IMKTDKITHIP--------------NVQAIHGLRLQKVPKTNYV  132 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETT---TTEEEEEEECT--------------TCCCEEEEEECCSSBCCEE
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECC---CCcEeeEEecC--------------CCCCccceEEeccCCEEEE
Confidence            467776664  5785 99999999999999987   34443333222              124699999999998 799


Q ss_pred             EeCCCCeEE
Q 010579          159 ADTMNMAIR  167 (507)
Q Consensus       159 ADs~N~rIr  167 (507)
                      +....+++.
T Consensus       133 ~~~~~~~v~  141 (441)
T d1qnia2         133 FCNAEFVIP  141 (441)
T ss_dssp             EEEECSCEE
T ss_pred             EeccCCccc
Confidence            877666553

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.26  E-value=0.19  Score=49.25  Aligned_cols=126  Identities=12%  Similarity=0.014  Sum_probs=82.1

Q ss_pred             CCeeEEEEc----CCCc-EEEEeCCCCeEEEEeCCCCCCCccE-EEecCCCCccccCCCCcccccCCCcceEEEcCCCC-
Q 010579           83 MEPFSVAVS----PSGE-LLVLDSENSNIYKISTSLSPYSRPK-LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-  155 (507)
Q Consensus        83 ~~P~gIaVd----~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~-~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-  155 (507)
                      ..|.+++++    +||. ||++....+.|..++..+   +.+. ++.+.....    +. ..-..-..+.+|+++++|. 
T Consensus       105 ~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t---~~~~~~~~~~~~~~----~~-~~~~~~~~~~~v~~s~dg~~  176 (432)
T d1qksa2         105 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET---LEPKKIQSTRGMTY----DE-QEYHPEPRVAAILASHYRPE  176 (432)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT---CCEEEEEECCEECT----TT-CCEESCCCEEEEEECSSSSE
T ss_pred             CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcc---ccceeeeccCCccc----cc-eeccCCCceeEEEECCCCCE
Confidence            467888775    4886 789999899999999863   3332 222221000    00 0001123466789999987 


Q ss_pred             EEEEeCCCCeEEEEcCCC-----cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCC
Q 010579          156 IYIADTMNMAIRKISDTG-----VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  230 (507)
Q Consensus       156 IYVADs~N~rIrk~d~~G-----VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~  230 (507)
                      ++|+-...+.|..++...     +.++..+                  ..|.++++.++...+|++....+.|..++...
T Consensus       177 ~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g------------------~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~  238 (432)
T d1qksa2         177 FIVNVKETGKILLVDYTDLNNLKTTEISAE------------------RFLHDGGLDGSHRYFITAANARNKLVVIDTKE  238 (432)
T ss_dssp             EEEEETTTTEEEEEETTCSSEEEEEEEECC------------------SSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             EEEEEccCCeEEEEEccCCCcceEEEEccc------------------CccccceECCCCCEEEEeccccceEEEeeccc
Confidence            778888889999998432     2333221                  14778886444445899999999999999887


Q ss_pred             Ccee
Q 010579          231 DDCS  234 (507)
Q Consensus       231 ~~~~  234 (507)
                      ..+.
T Consensus       239 ~~~~  242 (432)
T d1qksa2         239 GKLV  242 (432)
T ss_dssp             TEEE
T ss_pred             ceEE
Confidence            6654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.22  E-value=0.084  Score=51.03  Aligned_cols=112  Identities=8%  Similarity=-0.087  Sum_probs=70.9

Q ss_pred             CeeEEEEcCC--CcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEE
Q 010579           84 EPFSVAVSPS--GELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIA  159 (507)
Q Consensus        84 ~P~gIaVd~d--G~LYVaDs~n~rI~ki~~~g~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVA  159 (507)
                      .|..+.++.|  +.++|+...+++|+.+|..+   +++ .++-+.                 ..|.+|+++|||+ ||++
T Consensus        20 ~p~~~~~~~d~~~~~~V~~~~dg~v~vwD~~t---~~~~~~l~~g-----------------~~~~~vafSPDGk~l~~~   79 (426)
T d1hzua2          20 RPKKQLNDLDLPNLFSVTLRDAGQIALVDGDS---KKIVKVIDTG-----------------YAVHISRMSASGRYLLVI   79 (426)
T ss_dssp             SCSSCCSCCCGGGEEEEEETTTTEEEEEETTT---CSEEEEEECC-----------------SSEEEEEECTTSCEEEEE
T ss_pred             CCCcccccCCCCeEEEEEEcCCCEEEEEECCC---CcEEEEEeCC-----------------CCeeEEEECCCCCEEEEE
Confidence            4555555554  34679899999999999873   443 333221                 2588999999998 7777


Q ss_pred             eCCCCeEEEEcCC-C-c---EEEecCcccCCCCCCCCCccCccCCCCceEEEE----cCCCeEEEEeCCCCeEEEEECCC
Q 010579          160 DTMNMAIRKISDT-G-V---TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYV----GSSCSLLVIDRGNQAIREIQLHD  230 (507)
Q Consensus       160 Ds~N~rIrk~d~~-G-V---stIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~v----d~~G~LyVaD~gn~rIr~I~l~~  230 (507)
                      .. .+.|+++|.+ + .   ..+..                  ...|.++++.    ++...|+++...++.|+.++...
T Consensus        80 ~~-d~~v~vwd~~t~~~~~~~~i~~------------------~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~  140 (426)
T d1hzua2          80 GR-DARIDMIDLWAKEPTKVAEIKI------------------GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET  140 (426)
T ss_dssp             ET-TSEEEEEETTSSSCEEEEEEEC------------------CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT
T ss_pred             eC-CCCEEEEEccCCceeEEEEEeC------------------CCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCc
Confidence            65 4678999843 2 2   22211                  1123344321    23345788888888888888777


Q ss_pred             Ccee
Q 010579          231 DDCS  234 (507)
Q Consensus       231 ~~~~  234 (507)
                      ..+.
T Consensus       141 ~~~~  144 (426)
T d1hzua2         141 LEPK  144 (426)
T ss_dssp             CCEE
T ss_pred             ccee
Confidence            6654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.73  E-value=1.2  Score=39.71  Aligned_cols=71  Identities=8%  Similarity=0.075  Sum_probs=48.2

Q ss_pred             CeeEEEEcCCCcE-EEE-eCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeC
Q 010579           84 EPFSVAVSPSGEL-LVL-DSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT  161 (507)
Q Consensus        84 ~P~gIaVd~dG~L-YVa-Ds~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs  161 (507)
                      ....++++|||.. +++ +.....|+.++..+   +....+.+.                -.....++++++|+..++-.
T Consensus        44 ~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~---~~~~~~~~~----------------~~~v~~~~~spdg~~l~~~~  104 (360)
T d1k32a3          44 RIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT---GKAEKFEEN----------------LGNVFAMGVDRNGKFAVVAN  104 (360)
T ss_dssp             CEEEEEECSSSEEEEEEEETTEEEEEEEETTT---CCEEECCCC----------------CCSEEEEEECTTSSEEEEEE
T ss_pred             CEEEEEECCCCCEEEEEEcCCCCEEEEEECCC---CcEEEeeCC----------------CceEEeeeecccccccceec
Confidence            4678999999974 333 33335688888763   444433221                13456899999999888777


Q ss_pred             CCCeEEEEcCCC
Q 010579          162 MNMAIRKISDTG  173 (507)
Q Consensus       162 ~N~rIrk~d~~G  173 (507)
                      ..+.|+.++..+
T Consensus       105 ~~~~~~~~~~~~  116 (360)
T d1k32a3         105 DRFEIMTVDLET  116 (360)
T ss_dssp             TTSEEEEEETTT
T ss_pred             cccccccccccc
Confidence            788888888544

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=94.63  E-value=1.6  Score=39.73  Aligned_cols=50  Identities=8%  Similarity=0.036  Sum_probs=36.2

Q ss_pred             CCceEEEEcCCCe--EEEEeCCCCeEEEEECCCCceee-CCCC-CccceEEEEec
Q 010579          200 NDFDVVYVGSSCS--LLVIDRGNQAIREIQLHDDDCSD-NYDD-TFHLGIFVLVA  250 (507)
Q Consensus       200 ~P~gIa~vd~~G~--LyVaD~gn~rIr~I~l~~~~~~~-~~~~-G~p~gIa~~~~  250 (507)
                      .|.++++ ..+|+  ||++....+.|+.++..+..... .... ..|..|++...
T Consensus       319 ~~~~~a~-spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         319 DVDAISV-AQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             CeeEEEE-CCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            4678885 55654  78899999999999999877654 3333 36888887653

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.41  E-value=1.4  Score=38.73  Aligned_cols=109  Identities=6%  Similarity=0.058  Sum_probs=67.7

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  163 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N  163 (507)
                      ....|+++|+|.++++-+..+.|+.++...   ..........             ........++++++|+++++=+.+
T Consensus       228 ~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~---~~~~~~~~~~-------------~~~~~i~~~~~s~~~~~l~~g~~d  291 (340)
T d1tbga_         228 DINAICFFPNGNAFATGSDDATCRLFDLRA---DQELMTYSHD-------------NIICGITSVSFSKSGRLLLAGYDD  291 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTT---TEEEEEECCT-------------TCCSCEEEEEECSSSCEEEEEETT
T ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEeecc---cccccccccc-------------cccCceEEEEECCCCCEEEEEECC
Confidence            457899999999888877788999998752   2221111110             011234679999999988877777


Q ss_pred             CeEEEEcC-CC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEE
Q 010579          164 MAIRKISD-TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI  226 (507)
Q Consensus       164 ~rIrk~d~-~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I  226 (507)
                      +.|+.+|. .+  +.++.+-.                 ..-.+|++ .+++.++++-...+.|+..
T Consensus       292 g~i~iwd~~~~~~~~~~~~H~-----------------~~V~~l~~-s~d~~~l~s~s~Dg~v~iW  339 (340)
T d1tbga_         292 FNCNVWDALKADRAGVLAGHD-----------------NRVSCLGV-TDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             SCEEEEETTTCCEEEEECCCS-----------------SCEEEEEE-CTTSSCEEEEETTSCEEEE
T ss_pred             CEEEEEECCCCcEEEEEcCCC-----------------CCEEEEEE-eCCCCEEEEEccCCEEEEe
Confidence            88999994 34  44543210                 12245664 5566655555555666654

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.32  E-value=1.6  Score=39.65  Aligned_cols=107  Identities=14%  Similarity=0.161  Sum_probs=69.8

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  163 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N  163 (507)
                      ....|+++++|.++++-..++.|+.++...   +......+.                -.....|+++++|+++++=+..
T Consensus       226 ~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~----------------~~~i~~v~~s~~g~~l~s~s~D  286 (337)
T d1gxra_         226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNK---PDKYQLHLH----------------ESCVLSLKFAYCGKWFVSTGKD  286 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTS---SCEEEECCC----------------SSCEEEEEECTTSSEEEEEETT
T ss_pred             ceEEEEEcccccccceeccccccccccccc---ccccccccc----------------ccccceEEECCCCCEEEEEeCC
Confidence            567899999998877777788999998762   222222111                1235689999999988876677


Q ss_pred             CeEEEEcC-CC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEEC
Q 010579          164 MAIRKISD-TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQL  228 (507)
Q Consensus       164 ~rIrk~d~-~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l  228 (507)
                      +.|+.++. .+  +.++..                  -.....+++ .+++.++++-..++.|+..++
T Consensus       287 g~i~iwd~~~~~~~~~~~~------------------~~~v~~~~~-s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         287 NLLNAWRTPYGASIFQSKE------------------SSSVLSCDI-SVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             SEEEEEETTTCCEEEEEEC------------------SSCEEEEEE-CTTSCEEEEEETTSCEEEEEE
T ss_pred             CeEEEEECCCCCEEEEccC------------------CCCEEEEEE-eCCCCEEEEEeCCCeEEEEEE
Confidence            88999984 34  222211                  012345664 566776666666777877764

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.49  E-value=0.29  Score=45.83  Aligned_cols=115  Identities=11%  Similarity=0.027  Sum_probs=67.1

Q ss_pred             Ce-eEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           84 EP-FSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        84 ~P-~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      .| ..+++++||.++++-+.++.|+.++..+   ++...+.-    ..|+ .        ..-..|+++++|+++++=+.
T Consensus         8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~---~~~~~~~~----l~gH-~--------~~V~~l~fsp~~~~l~s~s~   71 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSG---NKWVQVHE----LKEH-N--------GQVTGVDWAPDSNRIVTCGT   71 (371)
T ss_dssp             SCCCEEEECTTSSEEEEECSSSEEEEEEEET---TEEEEEEE----EECC-S--------SCEEEEEEETTTTEEEEEET
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEECCC---CCEEEEEE----ecCC-C--------CCEEEEEECCCCCEEEEEEC
Confidence            45 6899999999888878888999998763   33222210    0111 1        13468999999997666555


Q ss_pred             CCeEEEEcCC-C-c-EEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCC
Q 010579          163 NMAIRKISDT-G-V-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  230 (507)
Q Consensus       163 N~rIrk~d~~-G-V-stIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~  230 (507)
                      ...|++.+.. + . .++.-..               .-....++.+ .++++.+++-..++.|+.++.+.
T Consensus        72 D~~i~vWd~~~~~~~~~~~~~~---------------~~~~v~~i~~-~p~~~~l~~~s~d~~i~i~~~~~  126 (371)
T d1k8kc_          72 DRNAYVWTLKGRTWKPTLVILR---------------INRAARCVRW-APNEKKFAVGSGSRVISICYFEQ  126 (371)
T ss_dssp             TSCEEEEEEETTEEEEEEECCC---------------CSSCEEEEEE-CTTSSEEEEEETTSSEEEEEEET
T ss_pred             CCeEEEEeeccccccccccccc---------------cccccccccc-ccccccceeecccCcceeeeeec
Confidence            6678887733 2 1 2221100               0112345664 45566555555667666665544

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.42  E-value=0.96  Score=42.34  Aligned_cols=133  Identities=15%  Similarity=0.107  Sum_probs=75.3

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccE-EEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPK-LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~-~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      ....|++.++| ++++-+.++.|+.++...   ++.. .+-... ...++         -...+.|+++|+|+++++=+.
T Consensus       186 ~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~---~~~~~~~~~~~-~l~~h---------~~~V~~l~~spdg~~l~sgs~  251 (393)
T d1sq9a_         186 FATSVDISERG-LIATGFNNGTVQISELST---LRPLYNFESQH-SMINN---------SNSIRSVKFSPQGSLLAIAHD  251 (393)
T ss_dssp             CCCEEEECTTS-EEEEECTTSEEEEEETTT---TEEEEEEECCC----CC---------CCCEEEEEECSSTTEEEEEEE
T ss_pred             cEEEEEECCCC-EEEEEeCCCcEEEEeecc---ccccccccccc-ccccc---------cceEEEcccccccceeeeecC
Confidence            46678999997 455667788999999762   3322 221110 11111         123568999999997776443


Q ss_pred             C---CeEEEEcC-CC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee
Q 010579          163 N---MAIRKISD-TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD  235 (507)
Q Consensus       163 N---~rIrk~d~-~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~  235 (507)
                      .   ..|+.+|. .|  +.++.......    .......+--..-.+|++ .++++++++-...+.|+..+.....|..
T Consensus       252 D~t~~~i~lwd~~~g~~~~~l~~~~~~~----~~~~~~~gH~~~V~~l~f-spd~~~l~S~s~D~~v~vWd~~~g~~~~  325 (393)
T d1sq9a_         252 SNSFGCITLYETEFGERIGSLSVPTHSS----QASLGEFAHSSWVMSLSF-NDSGETLCSAGWDGKLRFWDVKTKERIT  325 (393)
T ss_dssp             ETTEEEEEEEETTTCCEEEEECBC------------CCBSBSSCEEEEEE-CSSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             CCCcceeeecccccceeeeeeccccccc----cceeeeecccCceeeecc-CCCCCeeEEECCCCEEEEEECCCCCEEE
Confidence            2   35777773 33  44443211000    000000001112356774 6788888888888999999988776654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=93.22  E-value=0.45  Score=42.75  Aligned_cols=106  Identities=13%  Similarity=0.135  Sum_probs=61.9

Q ss_pred             EcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEE-EeCCCCeE
Q 010579           90 VSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYI-ADTMNMAI  166 (507)
Q Consensus        90 Vd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYV-ADs~N~rI  166 (507)
                      |+| ||+++++.. .++|+.++..+   +.+..+ +..                .....+++++||+ |++ ++.....|
T Consensus        10 fSP~dG~~~a~~~-~g~v~v~d~~~---~~~~~~-~~~----------------~~v~~~~~spDg~~l~~~~~~~g~~v   68 (360)
T d1k32a3          10 FSPLDGDLIAFVS-RGQAFIQDVSG---TYVLKV-PEP----------------LRIRYVRRGGDTKVAFIHGTREGDFL   68 (360)
T ss_dssp             EEECGGGCEEEEE-TTEEEEECTTS---SBEEEC-SCC----------------SCEEEEEECSSSEEEEEEEETTEEEE
T ss_pred             ccCCCCCEEEEEE-CCeEEEEECCC---CcEEEc-cCC----------------CCEEEEEECCCCCEEEEEEcCCCCEE
Confidence            556 677665544 35777777652   333222 211                2456899999997 444 34434567


Q ss_pred             EEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCcee
Q 010579          167 RKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS  234 (507)
Q Consensus       167 rk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~  234 (507)
                      ++.+..+  +..+.+.                 -.....+++ .+++..+++-...+.|+.++..+..+.
T Consensus        69 ~v~d~~~~~~~~~~~~-----------------~~~v~~~~~-spdg~~l~~~~~~~~~~~~~~~~~~~~  120 (360)
T d1k32a3          69 GIYDYRTGKAEKFEEN-----------------LGNVFAMGV-DRNGKFAVVANDRFEIMTVDLETGKPT  120 (360)
T ss_dssp             EEEETTTCCEEECCCC-----------------CCSEEEEEE-CTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             EEEECCCCcEEEeeCC-----------------CceEEeeee-cccccccceecccccccccccccccee
Confidence            8888544  3333211                 112346664 667777777777788888888776654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.36  E-value=0.73  Score=40.65  Aligned_cols=76  Identities=8%  Similarity=0.021  Sum_probs=45.4

Q ss_pred             CcceEEEcCCCCEEEEeCCCCeEEEEcCC-CcEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCe
Q 010579          144 HPKGLAVDDRGNIYIADTMNMAIRKISDT-GVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQA  222 (507)
Q Consensus       144 ~P~GIaVd~dGnIYVADs~N~rIrk~d~~-GVstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~r  222 (507)
                      ....|+++++|.++++-..++.|+.++.. +.....-..       ..+     .-....++++ .+++.++++-...+.
T Consensus       181 ~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~-------~~~-----h~~~v~~l~~-s~~~~~l~sgs~dg~  247 (299)
T d1nr0a2         181 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS-------WTF-----HTAKVACVSW-SPDNVRLATGSLDNS  247 (299)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC-------CCC-----CSSCEEEEEE-CTTSSEEEEEETTSC
T ss_pred             ccccccccccccccccccccccccccccccccccccccc-------ccc-----cccccccccc-cccccceEEEcCCCE
Confidence            45689999999977776667788988843 321110000       000     0112345664 566776666666788


Q ss_pred             EEEEECCCCc
Q 010579          223 IREIQLHDDD  232 (507)
Q Consensus       223 Ir~I~l~~~~  232 (507)
                      |+..+++...
T Consensus       248 i~iwd~~~~~  257 (299)
T d1nr0a2         248 VIVWNMNKPS  257 (299)
T ss_dssp             EEEEETTCTT
T ss_pred             EEEEECCCCC
Confidence            9999887644

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.25  E-value=0.33  Score=48.44  Aligned_cols=38  Identities=21%  Similarity=0.407  Sum_probs=32.3

Q ss_pred             CCCcceEEEcCCCCEEEEeCCCCeEEEEcCC-C-cEEEec
Q 010579          142 MNHPKGLAVDDRGNIYIADTMNMAIRKISDT-G-VTTIAG  179 (507)
Q Consensus       142 fn~P~GIaVd~dGnIYVADs~N~rIrk~d~~-G-VstIaG  179 (507)
                      |..|.+|++.+||+|||++....+|++++.. + ++++.+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~   65 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQ   65 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeeccc
Confidence            7899999999999999999888899999953 4 555554

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=91.21  E-value=2.1  Score=41.45  Aligned_cols=79  Identities=18%  Similarity=0.258  Sum_probs=53.1

Q ss_pred             CCeeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEc----CCCCEE
Q 010579           83 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVD----DRGNIY  157 (507)
Q Consensus        83 ~~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd----~dGnIY  157 (507)
                      ..+.|+++|. ++.|||++- +-.|++++.+.........+....        |.   .-...|.||++-    .+|.|.
T Consensus       180 ~q~EGCVvDde~~~LyisEE-~~Giw~~~a~~~~~~~~~~i~~~~--------g~---~l~~D~EGlaiy~~~~~~Gyli  247 (353)
T d1h6la_         180 SQTEGMAADDEYGSLYIAEE-DEAIWKFSAEPDGGSNGTVIDRAD--------GR---HLTPDIEGLTIYYAADGKGYLL  247 (353)
T ss_dssp             SCEEEEEEETTTTEEEEEET-TTEEEEEESSTTSCSCCEEEEECS--------SS---SCCSCEEEEEEEECGGGCEEEE
T ss_pred             CccceEEEeCCCCcEEEecC-ccceEEEEeccCCCccceeeeccc--------Cc---cccCCccccEEEEcCCCCeEEE
Confidence            4788999998 578999986 568999987532211222222111        10   013478999865    256799


Q ss_pred             EEeCCCCeEEEEcCCC
Q 010579          158 IADTMNMAIRKISDTG  173 (507)
Q Consensus       158 VADs~N~rIrk~d~~G  173 (507)
                      +++.++++..+++..+
T Consensus       248 vSsQG~n~f~vydr~~  263 (353)
T d1h6la_         248 ASSQGNSSYAIYERQG  263 (353)
T ss_dssp             EEEGGGTEEEEEESST
T ss_pred             EEcCCCCeEEEEecCC
Confidence            9999999999999544

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=90.97  E-value=2.1  Score=38.96  Aligned_cols=82  Identities=18%  Similarity=0.112  Sum_probs=48.7

Q ss_pred             eeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCC-CCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579           85 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSP-EGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  163 (507)
Q Consensus        85 P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~-~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N  163 (507)
                      -..|+++|+|+++++-...+.|+.++...   +......... ....|+         -..-..|+++++|+++++=+..
T Consensus       192 i~~v~~~p~~~~l~~~~~d~~v~~~d~~~---~~~~~~~~~~~~~~~~h---------~~~V~~~~~s~~~~~l~tgs~D  259 (311)
T d1nr0a1         192 VHSVRYNPDGSLFASTGGDGTIVLYNGVD---GTKTGVFEDDSLKNVAH---------SGSVFGLTWSPDGTKIASASAD  259 (311)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTT---CCEEEECBCTTSSSCSS---------SSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccCcccccccccccccccccccccc---ccccccccccccccccc---------cccccccccCCCCCEEEEEeCC
Confidence            46788888888777666667788887652   2211111110 001111         1234689999999977776667


Q ss_pred             CeEEEEcC-CC--cEEEe
Q 010579          164 MAIRKISD-TG--VTTIA  178 (507)
Q Consensus       164 ~rIrk~d~-~G--VstIa  178 (507)
                      +.|+.+|. .+  +.++-
T Consensus       260 g~v~iwd~~t~~~~~~l~  277 (311)
T d1nr0a1         260 KTIKIWNVATLKVEKTIP  277 (311)
T ss_dssp             SEEEEEETTTTEEEEEEE
T ss_pred             CeEEEEECCCCcEEEEEE
Confidence            78999984 44  44553

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=90.34  E-value=3.7  Score=37.15  Aligned_cols=123  Identities=11%  Similarity=0.161  Sum_probs=69.4

Q ss_pred             CeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           84 EPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        84 ~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      .-..|+++++|. ++++-+..+.|+.++...   +.........               -.....|+++++|+++++=..
T Consensus       148 ~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~---~~~~~~~~~~---------------~~~i~~v~~~p~~~~l~~~~~  209 (311)
T d1nr0a1         148 AMNSVDFKPSRPFRIISGSDDNTVAIFEGPP---FKFKSTFGEH---------------TKFVHSVRYNPDGSLFASTGG  209 (311)
T ss_dssp             CEEEEEECSSSSCEEEEEETTSCEEEEETTT---BEEEEEECCC---------------SSCEEEEEECTTSSEEEEEET
T ss_pred             ccccccccccceeeecccccccccccccccc---cccccccccc---------------cccccccccCccccccccccc
Confidence            356788888876 566666677888888762   3322222110               123468999999997776556


Q ss_pred             CCeEEEEcC-CC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee
Q 010579          163 NMAIRKISD-TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD  235 (507)
Q Consensus       163 N~rIrk~d~-~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~  235 (507)
                      .+.|+.++. ++  +.++.... ....++         -..-.+|++ .+++.++++-...+.|+.++.....|..
T Consensus       210 d~~v~~~d~~~~~~~~~~~~~~-~~~~~h---------~~~V~~~~~-s~~~~~l~tgs~Dg~v~iwd~~t~~~~~  274 (311)
T d1nr0a1         210 DGTIVLYNGVDGTKTGVFEDDS-LKNVAH---------SGSVFGLTW-SPDGTKIASASADKTIKIWNVATLKVEK  274 (311)
T ss_dssp             TSCEEEEETTTCCEEEECBCTT-SSSCSS---------SSCEEEEEE-CTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             cccccccccccccccccccccc-cccccc---------ccccccccc-CCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            677888884 33  22221110 000000         012235554 4555655555556778888777666543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.50  E-value=6  Score=34.25  Aligned_cols=113  Identities=12%  Similarity=0.115  Sum_probs=63.9

Q ss_pred             EEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccE-EEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCCeE
Q 010579           88 VAVSPSGELLVLDSENSNIYKISTSLSPYSRPK-LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAI  166 (507)
Q Consensus        88 IaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~-~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~rI  166 (507)
                      +...+.+.++++-...+.|+.++...   +... .+.+.                -.....|+++++|+++++=+.++.|
T Consensus       190 ~~~~~~~~~~~~~~~d~~v~i~d~~~---~~~~~~~~~h----------------~~~i~~v~~~p~~~~l~s~s~d~~i  250 (340)
T d1tbga_         190 LSLAPDTRLFVSGACDASAKLWDVRE---GMCRQTFTGH----------------ESDINAICFFPNGNAFATGSDDATC  250 (340)
T ss_dssp             EEECTTSSEEEEEETTTEEEEEETTT---TEEEEEECCC----------------SSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             eccccccceeEEeecCceEEEEECCC---CcEEEEEeCC----------------CCCeEEEEECCCCCEEEEEeCCCeE
Confidence            33444555666655566666666541   2221 11111                1234689999999977776677888


Q ss_pred             EEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee
Q 010579          167 RKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD  235 (507)
Q Consensus       167 rk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~  235 (507)
                      +.++...   +.++....               .......+++ .+++.++++-..++.|+.+++....+..
T Consensus       251 ~~~~~~~~~~~~~~~~~~---------------~~~~i~~~~~-s~~~~~l~~g~~dg~i~iwd~~~~~~~~  306 (340)
T d1tbga_         251 RLFDLRADQELMTYSHDN---------------IICGITSVSF-SKSGRLLLAGYDDFNCNVWDALKADRAG  306 (340)
T ss_dssp             EEEETTTTEEEEEECCTT---------------CCSCEEEEEE-CSSSCEEEEEETTSCEEEEETTTCCEEE
T ss_pred             EEEeeccccccccccccc---------------ccCceEEEEE-CCCCCEEEEEECCCEEEEEECCCCcEEE
Confidence            8888544   23331110               0111234553 5666766666667788888877665543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=89.49  E-value=2.3  Score=41.16  Aligned_cols=74  Identities=27%  Similarity=0.349  Sum_probs=49.8

Q ss_pred             CcceEEEcCC-CCEEEEeCCCCeEEEEcC--C-C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEE---cCCCeEE
Q 010579          144 HPKGLAVDDR-GNIYIADTMNMAIRKISD--T-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYV---GSSCSLL  214 (507)
Q Consensus       144 ~P~GIaVd~d-GnIYVADs~N~rIrk~d~--~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~v---d~~G~Ly  214 (507)
                      .+.|+++|++ +.|||++- +..|++++-  + +  .+.+....    ++.        -..-|-||++.   +.+|.|+
T Consensus       181 q~EGCVvDde~~~LyisEE-~~Giw~~~a~~~~~~~~~~i~~~~----g~~--------l~~D~EGlaiy~~~~~~Gyli  247 (353)
T d1h6la_         181 QTEGMAADDEYGSLYIAEE-DEAIWKFSAEPDGGSNGTVIDRAD----GRH--------LTPDIEGLTIYYAADGKGYLL  247 (353)
T ss_dssp             CEEEEEEETTTTEEEEEET-TTEEEEEESSTTSCSCCEEEEECS----SSS--------CCSCEEEEEEEECGGGCEEEE
T ss_pred             ccceEEEeCCCCcEEEecC-ccceEEEEeccCCCccceeeeccc----Ccc--------ccCCccccEEEEcCCCCeEEE
Confidence            5789999985 67999987 568999983  2 2  23331110    000        12246678765   3467899


Q ss_pred             EEeCCCCeEEEEECCC
Q 010579          215 VIDRGNQAIREIQLHD  230 (507)
Q Consensus       215 VaD~gn~rIr~I~l~~  230 (507)
                      +++.++++...++..+
T Consensus       248 vSsQG~n~f~vydr~~  263 (353)
T d1h6la_         248 ASSQGNSSYAIYERQG  263 (353)
T ss_dssp             EEEGGGTEEEEEESST
T ss_pred             EEcCCCCeEEEEecCC
Confidence            9999999999998765

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.36  E-value=6.3  Score=35.99  Aligned_cols=117  Identities=10%  Similarity=-0.062  Sum_probs=67.6

Q ss_pred             eeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCC
Q 010579           85 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM  164 (507)
Q Consensus        85 P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~  164 (507)
                      -..|+++|+|+++++-+..+.|+.++...   +......-..    +         .-.....|+++++|+.+++-+.++
T Consensus        54 V~~l~fsp~~~~l~s~s~D~~i~vWd~~~---~~~~~~~~~~----~---------~~~~v~~i~~~p~~~~l~~~s~d~  117 (371)
T d1k8kc_          54 VTGVDWAPDSNRIVTCGTDRNAYVWTLKG---RTWKPTLVIL----R---------INRAARCVRWAPNEKKFAVGSGSR  117 (371)
T ss_dssp             EEEEEEETTTTEEEEEETTSCEEEEEEET---TEEEEEEECC----C---------CSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEECCCCCEEEEEECCCeEEEEeecc---cccccccccc----c---------ccccccccccccccccceeecccC
Confidence            46889999999888766778899988752   2222111110    0         012456899999999766666666


Q ss_pred             eEEEEc--CCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 010579          165 AIRKIS--DTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD  231 (507)
Q Consensus       165 rIrk~d--~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~  231 (507)
                      .|+.++  ... .........+             .-....++++ .+++.++++-...+.|+.++....
T Consensus       118 ~i~i~~~~~~~~~~~~~~~~~~-------------~~~~v~~v~~-~p~~~~l~s~s~D~~v~v~~~~~~  173 (371)
T d1k8kc_         118 VISICYFEQENDWWVCKHIKKP-------------IRSTVLSLDW-HPNSVLLAAGSCDFKCRIFSAYIK  173 (371)
T ss_dssp             SEEEEEEETTTTEEEEEEECTT-------------CCSCEEEEEE-CTTSSEEEEEETTSCEEEEECCCT
T ss_pred             cceeeeeecccccccccccccc-------------cccccccccc-cccccceeccccCcEEEEEeeccC
Confidence            666554  332 2222110000             0012245554 566766666666788888886553

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.39  E-value=7.3  Score=34.85  Aligned_cols=84  Identities=12%  Similarity=0.065  Sum_probs=47.3

Q ss_pred             eEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccE-EEecCCCCccc--cCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579           86 FSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPK-LVAGSPEGYYG--HVDGRPRGARMNHPKGLAVDDRGNIYIADTM  162 (507)
Q Consensus        86 ~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~-~vaG~~~G~~G--~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~  162 (507)
                      ..|++++||+++++-. .+.|+.++...   +... .+.+.......  ..........-..-..|+++++|+++++=+.
T Consensus        66 ~~l~fs~dg~~lasg~-d~~i~iW~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~  141 (388)
T d1erja_          66 CCVKFSNDGEYLATGC-NKTTQVYRVSD---GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE  141 (388)
T ss_dssp             CEEEECTTSSEEEEEC-BSCEEEEETTT---CCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEET
T ss_pred             EEEEECCCCCEEEEEe-CCeEEEEEecc---cceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceeccc
Confidence            4899999999887754 67899998762   3322 22221100000  0000000001112357899999998877777


Q ss_pred             CCeEEEEcCCC
Q 010579          163 NMAIRKISDTG  173 (507)
Q Consensus       163 N~rIrk~d~~G  173 (507)
                      ++.|+.++...
T Consensus       142 dg~v~i~~~~~  152 (388)
T d1erja_         142 DRLIRIWDIEN  152 (388)
T ss_dssp             TSCEEEEETTT
T ss_pred             ccccccccccc
Confidence            78899888443

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.39  E-value=6.6  Score=35.17  Aligned_cols=70  Identities=19%  Similarity=0.196  Sum_probs=46.0

Q ss_pred             eEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCCe
Q 010579           86 FSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMA  165 (507)
Q Consensus        86 ~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~r  165 (507)
                      ..|+++++|+++++-+..+.|+.++...   +......-      ++         -.....+++.+++...++-.....
T Consensus       125 ~~l~~s~~~~~l~s~~~dg~v~i~~~~~---~~~~~~~~------~h---------~~~v~~~~~~~~~~~~~~~~~~~~  186 (388)
T d1erja_         125 RSVCFSPDGKFLATGAEDRLIRIWDIEN---RKIVMILQ------GH---------EQDIYSLDYFPSGDKLVSGSGDRT  186 (388)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTT---TEEEEEEC------CC---------SSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEEEECCCCCcceecccccccccccccc---cccccccc------cc---------ccccccccccccccccccccccee
Confidence            5789999999888888888999998762   22222111      11         123456778888776665556777


Q ss_pred             EEEEcCCC
Q 010579          166 IRKISDTG  173 (507)
Q Consensus       166 Irk~d~~G  173 (507)
                      |+.++...
T Consensus       187 i~~~d~~~  194 (388)
T d1erja_         187 VRIWDLRT  194 (388)
T ss_dssp             EEEEETTT
T ss_pred             eeeeeccc
Confidence            88887554

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.79  E-value=11  Score=33.76  Aligned_cols=71  Identities=15%  Similarity=0.111  Sum_probs=44.0

Q ss_pred             CCeeEEEEcCC-CcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCccccCCCCcccccCCCcceEEEc---CCCCEE
Q 010579           83 MEPFSVAVSPS-GELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVD---DRGNIY  157 (507)
Q Consensus        83 ~~P~gIaVd~d-G~LYVaDs~n~rI~ki~~~g~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd---~dGnIY  157 (507)
                      ..-..|+++|+ |.++++-...+.|+.++..   .++. .++.+..    .            ...++.+.   ++|.++
T Consensus       206 ~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~---~~~~~~~l~~~~----~------------~v~~~~~s~~~~dg~~l  266 (325)
T d1pgua1         206 SFVRDVEFSPDSGEFVITVGSDRKISCFDGK---SGEFLKYIEDDQ----E------------PVQGGIFALSWLDSQKF  266 (325)
T ss_dssp             CCEEEEEECSTTCCEEEEEETTCCEEEEETT---TCCEEEECCBTT----B------------CCCSCEEEEEESSSSEE
T ss_pred             CccEEeeeccccceeccccccccceeeeeec---cccccccccccc----c------------ccccceeeeeccCCCEE
Confidence            34578899985 6788877778899999875   2332 2222111    0            11122222   578877


Q ss_pred             EEeCCCCeEEEEcCC
Q 010579          158 IADTMNMAIRKISDT  172 (507)
Q Consensus       158 VADs~N~rIrk~d~~  172 (507)
                      ++=+..+.|+++|..
T Consensus       267 ~s~s~D~~i~iwd~~  281 (325)
T d1pgua1         267 ATVGADATIRVWDVT  281 (325)
T ss_dssp             EEEETTSEEEEEETT
T ss_pred             EEEeCCCeEEEEECC
Confidence            777777889999843

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.38  E-value=10  Score=31.77  Aligned_cols=70  Identities=17%  Similarity=0.242  Sum_probs=48.1

Q ss_pred             eeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCc-cEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579           85 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSR-PKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  163 (507)
Q Consensus        85 P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~-i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N  163 (507)
                      =..|+++|+|+++++-+..+.|+.++...   ++ +.++-+.                -.....++++++|.++++-...
T Consensus        20 I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~---~~~~~~~~~h----------------~~~V~~~~~~~~~~~~~~~~~~   80 (317)
T d1vyhc1          20 VTRVIFHPVFSVMVSASEDATIKVWDYET---GDFERTLKGH----------------TDSVQDISFDHSGKLLASCSAD   80 (317)
T ss_dssp             EEEEEECSSSSEEEEEESSSCEEEEETTT---CCCCEEECCC----------------SSCEEEEEECTTSSEEEEEETT
T ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCC---CCEEEEEeCC----------------CCcEEEEeeecccccccccccc
Confidence            35889999999988888889999999763   22 2222211                1234688999999987777666


Q ss_pred             CeEEEEcCCC
Q 010579          164 MAIRKISDTG  173 (507)
Q Consensus       164 ~rIrk~d~~G  173 (507)
                      ..+...+...
T Consensus        81 ~~~~~~~~~~   90 (317)
T d1vyhc1          81 MTIKLWDFQG   90 (317)
T ss_dssp             SCCCEEETTS
T ss_pred             cccccccccc
Confidence            6666666433

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=82.36  E-value=14  Score=31.68  Aligned_cols=73  Identities=14%  Similarity=0.079  Sum_probs=47.6

Q ss_pred             CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579           84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  163 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N  163 (507)
                      ....++++++|.++++-..++.|+.++...   +.......   ...++         -.....|+++++|.++++=+.+
T Consensus       181 ~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~---~~~~~~~~---~~~~h---------~~~v~~l~~s~~~~~l~sgs~d  245 (299)
T d1nr0a2         181 EITSVAFSNNGAFLVATDQSRKVIPYSVAN---NFELAHTN---SWTFH---------TAKVACVSWSPDNVRLATGSLD  245 (299)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEGGG---TTEESCCC---CCCCC---------SSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccccccccccccccccccccccc---cccccccc---ccccc---------ccccccccccccccceEEEcCC
Confidence            567899999988777777778899998652   11100000   01111         1234689999999977776667


Q ss_pred             CeEEEEcC
Q 010579          164 MAIRKISD  171 (507)
Q Consensus       164 ~rIrk~d~  171 (507)
                      +.|+.++.
T Consensus       246 g~i~iwd~  253 (299)
T d1nr0a2         246 NSVIVWNM  253 (299)
T ss_dssp             SCEEEEET
T ss_pred             CEEEEEEC
Confidence            78998883

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.25  E-value=17  Score=33.19  Aligned_cols=84  Identities=21%  Similarity=0.275  Sum_probs=53.4

Q ss_pred             CeeEEEEcCCCcEEEEeCCCC---eEEEEeCCCCCCCcc-EEEecCCC------CccccCCCCcccccCCCcceEEEcCC
Q 010579           84 EPFSVAVSPSGELLVLDSENS---NIYKISTSLSPYSRP-KLVAGSPE------GYYGHVDGRPRGARMNHPKGLAVDDR  153 (507)
Q Consensus        84 ~P~gIaVd~dG~LYVaDs~n~---rI~ki~~~g~~~g~i-~~vaG~~~------G~~G~~dG~~~~a~fn~P~GIaVd~d  153 (507)
                      .-..|+++|||+++++-+..+   .|+.++...   +.. ..+.....      ...|+         -+.-..|+++++
T Consensus       233 ~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~---g~~~~~l~~~~~~~~~~~~~~gH---------~~~V~~l~fspd  300 (393)
T d1sq9a_         233 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF---GERIGSLSVPTHSSQASLGEFAH---------SSWVMSLSFNDS  300 (393)
T ss_dssp             CEEEEEECSSTTEEEEEEEETTEEEEEEEETTT---CCEEEEECBC--------CCBSB---------SSCEEEEEECSS
T ss_pred             eEEEcccccccceeeeecCCCCcceeeeccccc---ceeeeeeccccccccceeeeecc---------cCceeeeccCCC
Confidence            356899999999888765433   577777752   332 22211110      01121         123468999999


Q ss_pred             CCEEEEeCCCCeEEEEc-CCC--cEEEec
Q 010579          154 GNIYIADTMNMAIRKIS-DTG--VTTIAG  179 (507)
Q Consensus       154 GnIYVADs~N~rIrk~d-~~G--VstIaG  179 (507)
                      |++.++=+..+.|++.| ..|  +.++-|
T Consensus       301 ~~~l~S~s~D~~v~vWd~~~g~~~~~l~g  329 (393)
T d1sq9a_         301 GETLCSAGWDGKLRFWDVKTKERITTLNM  329 (393)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             CCeeEEECCCCEEEEEECCCCCEEEEECC
Confidence            99999888889999999 445  566644