Citrus Sinensis ID: 010623

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500------
Protein Sequence
MADQYTWGLILGAVLGLVAVYNLGLLALYNLVMRSKSEDNGADSLRKTPTTALNGECPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPFPSPYRFWIGARIITVCILPAMLDNQIFLL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEcccHHHHHHHHHHHHccccEEEEccccccccccEEEEEcHHHHHHHHHccccHHHHHcccEEEEEEEEEEccEEEEEEEcccccccccEEEEEEcHHHHHHHHHHHHccccEEEEccEEEEEEEEccEEEEEEEEEccccEEEEEccEEEEccccccHHHHHHccccccccccEEEEEEEEcccccccEEEEEEccccEEEEEEcccccEEEEEEEccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHccccEEEccccccccccccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEccccccccccccccccEEEEcccHHHHHHHHHHHHcccEEEEEEccccccccEHHHHccccHHHHHHHcccHHHHcccccEEEEEEEEEEcccEEEEccccccccccccccEcccHHHHHHHHHHHHcccccEEEEEEEHHEEccccEEEEEEEEEccccEEEEEEcEEEEEccHHHHHHHHHcccccccccEEEEEEEEcccccccccEEEEEEccccEEEEEcccccEEEEEEcccccccccccccHHHHHHHHccccccHHHHHHHHHHHHccccccccccccccccccccEEEEEEccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MADQYTWGLILGAVLGLVAVYNLGLLALYNLVMRsksedngadslrktpttalngecpfdadVIVVGAGVAGAALANTLAKDGRRVHVIErdlsepdrivgellqpggyLKLIELGLEDCVEQIDAQRVFGYAlfkdgnrtqisyplekfhsdvagrgfhngRFVQRLREKAAslpnvrleqgtvtslleekgtikgvqyktkageeltayapltivcdgcfsnlrrslcnpkvdvpscFVGLVlencnlpfenhghvvladpspilfypissnevrclvdipgqkvpsisngemANYLKTVvapqipreIFHSFVAavdggniktmpnrsmpaapyptpgallmgdafnmrhpltgggmtvALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLslggifssgpvsllsglnprpliLVFHFFAVAIYGvgrillpfpspyrfwigARIITVCILPamldnqifll
Flexible Loop (DISEMBL)
MADQYTWGLILGAVLGLVAVYNLGLLALYNLVMRSKSEDNGADSLRKTPTTALNGECPFDADVIVVGAGVAGAALantlakdgrrvHVIErdlsepdrivgELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLRekaaslpnvrleqgtvtslleekgtikgvqykTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPFPSPYRFWIGARIITVCILPAMLDNQIFLL
Low Complexity Region (SEG)
MADQYTWglilgavlglvavynlgllalynlvMRSKSEDNGADSLRKTPTTALNGECPFDADVIvvgagvagaaLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVIlrnllrhlsnlnDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPFPSPYRFWIGARIITVCILPAMLDNQIFLL
Disordered region (IsUnstruct)
****YTWGLILGAVLGLVAVYNLGLLALYNLVM******************ALNGECPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIK**************PGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSA********MRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPFPSPYRFWIGARIITVCILPAMLDNQIFL*
Disordered Region (DISOPRED)
**DQYTWGLILGAVLGLVAVYNLGLL***********************************DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPFPSPYRFWIGARIITVCILPAMLDNQIFLL
Disordered Region (DISEMBL)
MADQYTWGLILGAVLGLVAVYNLGLLALYNLVMRSKSEDNGADSLRKTPTTALNGECPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPFPSPYRFWIGARIITVCILPAMLDNQIFLL
Disordered Region (DISPRO)
*ADQYTWGLILGAVLGLVAVYNLGLLALYNLVM************************PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPFPSPYRFWIGARIITVCILPAMLDNQIFLL
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
oooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHooooooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADQYTWGLILGAVLGLVAVYNLGLLALYNLVMRSKSEDNGADSLRKTPTTALNGECPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPFPSPYRFWIGARIITVCILPAMLDNQIFLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	506	2.2.26 [Sep-21-2011]
O48651	539	Squalene monooxygenase OS	N/A	no	0.849	0.797	0.811	0.0
O65404	516	Squalene monooxygenase 1,	no	no	0.855	0.839	0.536	1e-137
O65727	506	Squalene monooxygenase 1,	N/A	no	0.891	0.891	0.527	1e-135
O65726	518	Squalene monooxygenase 1,	N/A	no	0.855	0.835	0.508	1e-132
O65402	517	Squalene monooxygenase 1,	no	no	0.837	0.820	0.521	1e-129
O65403	516	Squalene monooxygenase 2	no	no	0.877	0.860	0.503	1e-128
Q14534	574	Squalene monooxygenase OS	yes	no	0.814	0.717	0.482	1e-103
P52019	572	Squalene monooxygenase OS	yes	no	0.800	0.708	0.472	1e-100
P52020	573	Squalene monooxygenase OS	yes	no	0.851	0.752	0.444	6e-99
Q9C1W3	457	Probable squalene monooxy	yes	no	0.802	0.888	0.400	2e-79

>sp|O48651|ERG1_PANGI Squalene monooxygenase OS=Panax ginseng PE=2 SV=1

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/430 (81%), Positives = 398/430 (92%)

Query: 61  ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDC 120
            DVI+VGAGVAG+ALA TLA DGRRVHVIERDL+E DRIVGELLQPGGYLKLIELGLEDC
Sbjct: 75  TDVIIVGAGVAGSALAYTLANDGRRVHVIERDLTEQDRIVGELLQPGGYLKLIELGLEDC 134

Query: 121 VEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRL 180
           V +IDAQRVFGYAL+ DG  T++SYPLEKFHSDVAGR FHNGRFVQR+REKAASLPNVR+
Sbjct: 135 VNEIDAQRVFGYALYMDGKNTRLSYPLEKFHSDVAGRSFHNGRFVQRMREKAASLPNVRM 194

Query: 181 EQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCF 240
           EQGTVTSL+E+KG++KGVQYKTK G+EL+A+APLTIVCDGCFSNLRRSLCNPKV+VPSCF
Sbjct: 195 EQGTVTSLVEKKGSVKGVQYKTKDGQELSAFAPLTIVCDGCFSNLRRSLCNPKVEVPSCF 254

Query: 241 VGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMANYLK 300
           VGL+LEN +LP  NHGHV+LADPSPILFY ISS E+RCLVD+PGQKVP ISNGE+ANYLK
Sbjct: 255 VGLILENIDLPHINHGHVILADPSPILFYKISSTEIRCLVDVPGQKVPCISNGELANYLK 314

Query: 301 TVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGM 360
           TVVAPQ+P+++++SF+AAVD GNI+TMPNRSMPA P+PTPGALL+GDAFNMRHPLTGGGM
Sbjct: 315 TVVAPQVPKQLYNSFIAAVDKGNIRTMPNRSMPADPHPTPGALLLGDAFNMRHPLTGGGM 374

Query: 361 TVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPD 420
           TVALSDIV++R+LLR L +L+D+  LC YLESFYTLRKPVASTINTLAGALY+VF ASPD
Sbjct: 375 TVALSDIVLIRDLLRPLRDLHDSSTLCKYLESFYTLRKPVASTINTLAGALYKVFCASPD 434

Query: 421 EARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPFPSP 480
           +AR+EMR ACFDYLSLGGI S GP++LLSGLNPRP+ L  HFFAVAIYGVGR+L+PFPSP
Sbjct: 435 KARQEMRNACFDYLSLGGICSQGPIALLSGLNPRPISLFLHFFAVAIYGVGRLLIPFPSP 494

Query: 481 YRFWIGARII 490
            R W+GAR+I
Sbjct: 495 KRMWLGARLI 504

Catalyzes the first oxygenation step in sterol biosynthesis and is suggested to be one of the rate-limiting enzymes in this pathway.
Panax ginseng (taxid: 4054)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: 1EC: 3EC: 2

>sp|O65404|ERG11_ARATH Squalene monooxygenase 1,1 OS=Arabidopsis thaliana GN=SQP1,1 PE=2 SV=2

 Score =  487 bits (1253), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 234/436 (53%), Positives = 308/436 (70%), Gaps = 3/436 (0%)

Query: 62  DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCV 121
           DVI+VGAGV G+ALA  LAKDGRRVHVIERDL EP+RI+GE +QPGG L L +LGLEDC+
Sbjct: 47  DVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERIMGEFMQPGGRLMLSKLGLEDCL 106

Query: 122 EQIDAQRVFGYALFKDGNRTQISYPLEK--FHSDVAGRGFHNGRFVQRLREKAASLPNVR 179
           E IDAQ+  G  ++KDG     S+P++   F  D + R FHNGRFVQRLR+KA+SLPNVR
Sbjct: 107 EGIDAQKATGMTVYKDGKEAVASFPVDNNNFPFDPSARSFHNGRFVQRLRQKASSLPNVR 166

Query: 180 LEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSC 239
           LE+GTV SL+EEKG IKGV YK  AGEE TA APLT+VCDGC+SNLRRSL +   +V S 
Sbjct: 167 LEEGTVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLNDNNAEVLSY 226

Query: 240 FVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMANYL 299
            VG + +NC L       ++++ PS  + Y ISS +VRC+ ++    +PSISNGEMA ++
Sbjct: 227 QVGFISKNCQLEEPEKLKLIMSKPSFTMLYQISSTDVRCVFEVLPNNIPSISNGEMATFV 286

Query: 300 KTVVAPQIPREIFHSFVAAVD-GGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGG 358
           K  +APQ+P ++   F+  +D G +IK MP + M A      G +L+GDAFNMRHP    
Sbjct: 287 KNTIAPQVPLKLRKIFLKGIDEGEHIKAMPTKKMTATLSEKKGVILLGDAFNMRHPAIAS 346

Query: 359 GMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSAS 418
           GM V LSDI+ILR LL+ LSNL +A  +   ++SFY +RKP+++T+NTL  A  QV  AS
Sbjct: 347 GMMVLLSDILILRRLLQPLSNLGNAQKISQVIKSFYDIRKPMSATVNTLGNAFSQVLVAS 406

Query: 419 PDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPFP 478
            DEA++ MRQ C+DYLS GG  +SG ++LL G+NPRP+ L++H  A+ +  +G +L PFP
Sbjct: 407 TDEAKEAMRQGCYDYLSSGGFRTSGMMALLGGMNPRPISLIYHLCAITLSSIGHLLSPFP 466

Query: 479 SPYRFWIGARIITVCI 494
           SP R W   R+  + +
Sbjct: 467 SPLRIWHSLRLFGLAM 482

Catalyzes the first oxygenation step in sterol biosynthesis and is suggested to be one of the rate-limiting enzymes in this pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 3

EC: 2

>sp|O65727|ERG11_BRANA Squalene monooxygenase 1,1 OS=Brassica napus GN=SQP1,1 PE=2 SV=1

 Score =  480 bits (1236), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 239/453 (52%), Positives = 312/453 (68%), Gaps = 2/453 (0%)

Query: 39  DNGADSLRKTPTTALNGECPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDR 98
           +N    + K P  A       DADVI+VGAGV G+ALA  LAKDGRRVHVIERD+ EP R
Sbjct: 26  NNRRKKVAKLPDAATEVRRDGDADVIIVGAGVGGSALAYALAKDGRRVHVIERDMREPVR 85

Query: 99  IVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEK-FHSDVAGR 157
           ++GE +QPGG L L +LGLEDC+E ID Q   G A++KDG +  +S+P +  F  +  GR
Sbjct: 86  MMGEFMQPGGRLLLSKLGLEDCLEGIDEQIATGLAVYKDGQKALVSFPEDNDFPYEPTGR 145

Query: 158 GFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV 217
            F+NGRFVQRLR+KA+SLP V+LE+GTV SL+EEKG IKGV YK  AGEE TA+APLT+V
Sbjct: 146 AFYNGRFVQRLRQKASSLPTVQLEEGTVKSLIEEKGVIKGVTYKNSAGEETTAFAPLTVV 205

Query: 218 CDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVR 277
           CDGC+SNLRRS+ +   +V S  VG V +NC L       ++++ PS  + Y ISS +VR
Sbjct: 206 CDGCYSNLRRSVNDNNAEVISYQVGYVSKNCQLEDPEKLKLIMSKPSFTMLYQISSTDVR 265

Query: 278 CLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVD-GGNIKTMPNRSMPAAP 336
           C+++I    +PSISNGEMA YLK  +APQ+P E+   F+  +D G  IK MP + M A  
Sbjct: 266 CVMEIFPGNIPSISNGEMAVYLKNTMAPQVPPELRKIFLKGIDEGAQIKAMPTKRMEATL 325

Query: 337 YPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTL 396
               G +++GDAFNMRHP    GM V LSDI+ILR LL+ L NL+DA  +   ++SFY +
Sbjct: 326 SEKQGVIVLGDAFNMRHPAIASGMMVVLSDILILRRLLQPLRNLSDANKVSEVIKSFYVI 385

Query: 397 RKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPL 456
           RKP+++T+NTL  A  QV  AS DEA++ MRQ CFDYLS GG  +SG ++LL G+NPRPL
Sbjct: 386 RKPMSATVNTLGNAFSQVLIASTDEAKEAMRQGCFDYLSSGGFRTSGMMALLGGMNPRPL 445

Query: 457 ILVFHFFAVAIYGVGRILLPFPSPYRFWIGARI 489
            L+FH   + +  +G++L PFPSP   W   R+
Sbjct: 446 SLIFHLCGITLSSIGQLLSPFPSPLGIWHSLRL 478

Catalyzes the first oxygenation step in sterol biosynthesis and is suggested to be one of the rate-limiting enzymes in this pathway.

Brassica napus (taxid: 3708)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 3

EC: 2

>sp|O65726|ERG12_BRANA Squalene monooxygenase 1,2 OS=Brassica napus GN=SQP1,2 PE=2 SV=1

 Score =  473 bits (1216), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 221/435 (50%), Positives = 311/435 (71%), Gaps = 2/435 (0%)

Query: 62  DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCV 121
           DVI+VGAGV G+ALA  LAKDGRRVHVIERD+ EP R++GE +QPGG L L +LGL+DC+
Sbjct: 50  DVIIVGAGVGGSALAYALAKDGRRVHVIERDMREPVRMMGEFMQPGGRLMLSKLGLQDCL 109

Query: 122 EQIDAQRVFGYALFKDGNRTQISYPLE-KFHSDVAGRGFHNGRFVQRLREKAASLPNVRL 180
           E+IDAQ+  G  LFKDG  T   +P++  F  + +GR FHNGRFVQRLR+KA+SLPNVRL
Sbjct: 110 EEIDAQKSTGIRLFKDGKETVACFPVDTNFPYEPSGRFFHNGRFVQRLRQKASSLPNVRL 169

Query: 181 EQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCF 240
           E+GTV SL+EEKG +KGV YK  +GEE T++APLT+VCDGC SNLRRSL +   +V +  
Sbjct: 170 EEGTVRSLIEEKGVVKGVTYKNSSGEETTSFAPLTVVCDGCHSNLRRSLNDNNAEVTAYE 229

Query: 241 VGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMANYLK 300
           +G +  NC L   +  H+++A PS  + Y +SS +VRC  ++  + +PS+SNGEM ++++
Sbjct: 230 IGYISRNCRLEQPDKLHLIMAKPSFAMLYQVSSTDVRCNFELLSKNLPSVSNGEMTSFVR 289

Query: 301 TVVAPQIPREIFHSFVAAVD-GGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGG 359
             +APQ+P ++  +F+  +D G +IK    + +PA      G +++GDAFNMRHP+   G
Sbjct: 290 NSIAPQVPLKLRKTFLKGLDEGSHIKITQAKRIPATLSRKKGVIVLGDAFNMRHPVIASG 349

Query: 360 MTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASP 419
           M V LSDI+IL  LL+ L NL D   +   ++SFY LRKP+++T+NTL  + +QV  AS 
Sbjct: 350 MMVLLSDILILSRLLKPLGNLGDENKVSEVMKSFYALRKPMSATVNTLGNSFWQVLIAST 409

Query: 420 DEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPFPS 479
           DEA++ MRQ CFDYLS GG  +SG ++L+ G+NPRPL L +H F +++  +G++L PFP+
Sbjct: 410 DEAKEAMRQGCFDYLSSGGFRTSGLMALIGGMNPRPLSLFYHLFVISLSSIGQLLSPFPT 469

Query: 480 PYRFWIGARIITVCI 494
           P R W   R++ + +
Sbjct: 470 PLRVWHSLRLLDLSL 484

Catalyzes the first oxygenation step in sterol biosynthesis and is suggested to be one of the rate-limiting enzymes in this pathway.

Brassica napus (taxid: 3708)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 3

EC: 2

>sp|O65402|ERG12_ARATH Squalene monooxygenase 1,2 OS=Arabidopsis thaliana GN=SQP1,2 PE=2 SV=1

 Score =  462 bits (1189), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 223/428 (52%), Positives = 299/428 (69%), Gaps = 4/428 (0%)

Query: 61  ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDC 120
           ADVI+VGAGV G+ALA  LAKDGRRVHVIERD+ EP+R++GE +QPGG L L +LGL+DC
Sbjct: 46  ADVIIVGAGVGGSALAYALAKDGRRVHVIERDMREPERMMGEFMQPGGRLMLSKLGLQDC 105

Query: 121 VEQIDAQRVFGYALFKDGNRTQISYPLEK--FHSDVAGRGFHNGRFVQRLREKAASLPNV 178
           +E IDAQ+  G A++KDG      +P++   F  + + R FHNGRFVQ+LR KA SL NV
Sbjct: 106 LEDIDAQKATGLAVYKDGKEADAPFPVDNNNFSYEPSARSFHNGRFVQQLRRKAFSLSNV 165

Query: 179 RLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPK-VDVP 237
           RLE+GTV SLLEEKG +KGV YK K GEE TA APLT+VCDGC+SNLRRSL +    ++ 
Sbjct: 166 RLEEGTVKSLLEEKGVVKGVTYKNKEGEETTALAPLTVVCDGCYSNLRRSLNDDNNAEIM 225

Query: 238 SCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMAN 297
           S  VG + +NC L      H++L+ PS  + Y ISS +VRC  ++  +  PSI+NGEM+ 
Sbjct: 226 SYIVGYISKNCRLEEPEKLHLILSKPSFTMVYQISSTDVRCGFEVLPENFPSIANGEMST 285

Query: 298 YLKTVVAPQIPREIFHSFVAAVD-GGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLT 356
           ++K  + PQ+P ++   F+  +D G +IK +P + M +      G +++GDAFNMRHP+ 
Sbjct: 286 FMKNTIVPQVPPKLRKIFLKGIDEGAHIKVVPAKRMTSTLSKKKGVIVLGDAFNMRHPVV 345

Query: 357 GGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFS 416
             GM V LSDI+ILR LL+ LSNL DA  +   + SFY +RKP+++T+NTL  A  QV  
Sbjct: 346 ASGMMVLLSDILILRRLLQPLSNLGDANKVSEVINSFYDIRKPMSATVNTLGNAFSQVLI 405

Query: 417 ASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLP 476
            S DEA++ MRQ  +DYL  GG  +SG ++LL G+NPRPL LV+H  A+ +  +G++L P
Sbjct: 406 GSTDEAKEAMRQGVYDYLCSGGFRTSGMMALLGGMNPRPLSLVYHLCAITLSSIGQLLSP 465

Query: 477 FPSPYRFW 484
           FPSP R W
Sbjct: 466 FPSPLRIW 473

Catalyzes the first oxygenation step in sterol biosynthesis and is suggested to be one of the rate-limiting enzymes in this pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 3

EC: 2

>sp|O65403|ERG13_ARATH Squalene monooxygenase 2 OS=Arabidopsis thaliana GN=SQP2 PE=2 SV=1

 Score =  458 bits (1178), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 231/459 (50%), Positives = 308/459 (67%), Gaps = 15/459 (3%)

Query: 44  SLRKTPTTALNGECPFD----ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI 99
            ++K  T  L  E         DVI+VGAGVAGA+LA  LAKDGRRVHVIERDL EP R 
Sbjct: 23  KMKKAATGDLEAEAEARRDGATDVIIVGAGVAGASLAYALAKDGRRVHVIERDLKEPQRF 82

Query: 100 VGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEK-FHSDVAGRG 158
           +GEL+Q GG   L +LGLEDC+E IDAQ     A++KDG    + +P +K F  +  GR 
Sbjct: 83  MGELMQAGGRFMLAQLGLEDCLEDIDAQEAKSLAIYKDGKHATLPFPDDKSFPHEPVGRL 142

Query: 159 FHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC 218
             NGR VQRLR+KAASL NV+LE+GTV SL+EE+G +KGV YK  AGEE+TA+APLT+VC
Sbjct: 143 LRNGRLVQRLRQKAASLSNVQLEEGTVKSLIEEEGVVKGVTYKNSAGEEITAFAPLTVVC 202

Query: 219 DGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRC 278
           DGC+SNLRRSL +   +V S  VG V +N  L   +  H++ + P   + Y I+S+EVRC
Sbjct: 203 DGCYSNLRRSLVDNTEEVLSYMVGYVTKNSRLEDPHSLHLIFSKPLVCVIYQITSDEVRC 262

Query: 279 LVDIPGQKVPSISNGEMANYLKTVVAPQIP-----REIFHSFVAAVDGG--NIKTMPNRS 331
           + ++P   +PSISNGEM+ +LK  +APQIP     REI   F+  ++ G   IK+   +S
Sbjct: 263 VAEVPADSIPSISNGEMSTFLKKSMAPQIPETGNLREI---FLKGIEEGLPEIKSTATKS 319

Query: 332 MPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLE 391
           M +      G +++GDAFNMRHP+   GM VALSDI ILRNLL+ L NL++   + + ++
Sbjct: 320 MSSRLCDKRGVIVLGDAFNMRHPIIASGMMVALSDICILRNLLKPLPNLSNTKKVSDLVK 379

Query: 392 SFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGL 451
           SFY +RKP+++T+NTLA    QV  A+ DEAR+ MRQ CF+YL+ G   + G +++L G+
Sbjct: 380 SFYIIRKPMSATVNTLASIFSQVLVATTDEAREGMRQGCFNYLARGDFKTRGLMTILGGM 439

Query: 452 NPRPLILVFHFFAVAIYGVGRILLPFPSPYRFWIGARII 490
           NP PL LV H  A+ +  +G +L PFPSP RFW   RI+
Sbjct: 440 NPHPLTLVLHLVAITLTSMGHLLSPFPSPRRFWHSLRIL 478

Catalyzes the first oxygenation step in sterol biosynthesis and is suggested to be one of the rate-limiting enzymes in this pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 3

EC: 2

>sp|Q14534|ERG1_HUMAN Squalene monooxygenase OS=Homo sapiens GN=SQLE PE=1 SV=3

 Score =  377 bits (968), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/427 (48%), Positives = 277/427 (64%), Gaps = 15/427 (3%)

Query: 48  TPTTALNGECPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPG 107
           T T++ N     D +VI+VGAGV G+ALA  L++DGR+V VIERDL EPDRIVGE LQPG
Sbjct: 116 TSTSSQN-----DPEVIIVGAGVLGSALAAVLSRDGRKVTVIERDLKEPDRIVGEFLQPG 170

Query: 108 GYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRT--QISYPLEKFHSDVAGRGFHNGRFV 165
           GY  L +LGL D VE +DAQ V GY +    +++  QI YPL + +   +GR FH+GRF+
Sbjct: 171 GYHVLKDLGLGDTVEGLDAQVVNGYMIHDQESKSEVQIPYPLSENNQVQSGRAFHHGRFI 230

Query: 166 QRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTK-AGEELTAYAPLTIVCDGCFSN 224
             LR+ A + PN +  +G V  LLEE   + GVQYK K  G+    +APLT+V DG FS 
Sbjct: 231 MSLRKAAMAEPNAKFIEGVVLQLLEEDDVVMGVQYKDKETGDIKELHAPLTVVADGLFSK 290

Query: 225 LRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPG 284
            R+SL + KV V S FVG +++N      NH  ++LA+PSP+L Y ISS+E R LVDI G
Sbjct: 291 FRKSLVSNKVSVSSHFVGFLMKNAPQFKANHAELILANPSPVLIYQISSSETRVLVDIRG 350

Query: 285 QKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALL 344
           + +P      +  Y+   + PQIP  +   F+ A D  ++++MP   +P +     G LL
Sbjct: 351 E-MPR----NLREYMVEKIYPQIPDHLKEPFLEATDNSHLRSMPASFLPPSSVKKRGVLL 405

Query: 345 MGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVAS-T 403
           +GDA+NMRHPLTGGGMTVA  DI + R LL+ + +L D  A+    +SFY  RK   S  
Sbjct: 406 LGDAYNMRHPLTGGGMTVAFKDIKLWRKLLKGIPDLYDDAAIFEAKKSFYWARKTSHSFV 465

Query: 404 INTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFF 463
           +N LA ALY++FSA+ D++  ++R+ACF Y  LGG   +GPV LLS L+P PL+L+ HFF
Sbjct: 466 VNILAQALYELFSAT-DDSLHQLRKACFLYFKLGGECVAGPVGLLSVLSPNPLVLIGHFF 524

Query: 464 AVAIYGV 470
           AVAIY V
Sbjct: 525 AVAIYAV 531

Catalyzes the first oxygenation step in sterol biosynthesis and is suggested to be one of the rate-limiting enzymes in this pathway.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 3

EC: 2

>sp|P52019|ERG1_MOUSE Squalene monooxygenase OS=Mus musculus GN=Sqle PE=2 SV=1

 Score =  367 bits (942), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/415 (47%), Positives = 270/415 (65%), Gaps = 10/415 (2%)

Query: 60  DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLED 119
           D +VI+VG+GV G+ALA  L++DGR+V VIERDL EPDRIVGELLQPGGY  L ELGL D
Sbjct: 121 DPEVIIVGSGVLGSALAAVLSRDGRKVTVIERDLKEPDRIVGELLQPGGYRVLQELGLGD 180

Query: 120 CVEQIDAQRVFGYAL--FKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPN 177
            VE ++A  + GY +  ++  +  QI YPL + +   +G  FH+GRF+  LR+ A + PN
Sbjct: 181 TVEGLNAHHIHGYIVHDYESRSEVQIPYPLSETNQVQSGIAFHHGRFIMSLRKAAMAEPN 240

Query: 178 VRLEQGTVTSLLEEKGTIKGVQYKTK-AGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDV 236
           V+  +G V  LLEE   + GVQYK K  G+    +APLT+V DG FS  R+SL + KV V
Sbjct: 241 VKFIEGVVLQLLEEDDAVIGVQYKDKETGDTKELHAPLTVVADGLFSKFRKSLISSKVSV 300

Query: 237 PSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMA 296
            S FVG ++++      N   +VL +PSP+L Y ISS+E R LVDI G+ +P      + 
Sbjct: 301 SSHFVGFLMKDAPQFKPNFAELVLVNPSPVLIYQISSSETRVLVDIRGE-LPR----NLR 355

Query: 297 NYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLT 356
            Y+   + PQ+P  +  SF+ A   G ++TMP   +P +     G L++GDA+N+RHPLT
Sbjct: 356 EYMAEQIYPQLPEHLKESFLEASQNGRLRTMPASFLPPSSVNKRGVLILGDAYNLRHPLT 415

Query: 357 GGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVAS-TINTLAGALYQVF 415
           GGGMTVAL DI + R LL+ + +L D  A+    +SF+  RK   S  +N LA ALY++F
Sbjct: 416 GGGMTVALKDIKLWRQLLKDIPDLYDDAAIFQAKKSFFWSRKRTHSFVVNVLAQALYELF 475

Query: 416 SASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGV 470
           SA+ D++  ++R+ACF Y  LGG   +GPV LLS L+P PL+L+ HFF+VAIY  
Sbjct: 476 SAT-DDSLHQLRKACFLYFKLGGECVTGPVGLLSILSPHPLVLIRHFFSVAIYAT 529

Catalyzes the first oxygenation step in sterol biosynthesis and is suggested to be one of the rate-limiting enzymes in this pathway.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 3

EC: 2

>sp|P52020|ERG1_RAT Squalene monooxygenase OS=Rattus norvegicus GN=Sqle PE=2 SV=1

 Score =  361 bits (927), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 196/441 (44%), Positives = 278/441 (63%), Gaps = 10/441 (2%)

Query: 34  RSKSEDNGADSLRKTPTTALNGECPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93
           R + E N +++      T+++     D +VI++G+GV G+ALA  L++DGR V VIERDL
Sbjct: 96  RRRKEVNLSETTLTGAATSVSTSSVTDPEVIIIGSGVLGSALATVLSRDGRTVTVIERDL 155

Query: 94  SEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRT--QISYPLEKFH 151
            EPDRI+GE LQPGGY  L ELGL D VE ++A  + GY +    +R+  QI YP+ + +
Sbjct: 156 KEPDRILGECLQPGGYRVLRELGLGDTVESLNAHHIHGYVIHDCESRSEVQIPYPVSENN 215

Query: 152 SDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTK-AGEELTA 210
              +G  FH+G+F+  LR+ A + PNV+  +G V  LLEE   + GVQYK K  G+    
Sbjct: 216 QVQSGVAFHHGKFIMSLRKAAMAEPNVKFIEGVVLRLLEEDDAVIGVQYKDKETGDTKEL 275

Query: 211 YAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLADPSPILFYP 270
           +APLT+V DG FS  R++L + KV V S FVG ++++      N   +VL DPSP+L Y 
Sbjct: 276 HAPLTVVADGLFSKFRKNLISNKVSVSSHFVGFIMKDAPQFKANFAELVLVDPSPVLIYQ 335

Query: 271 ISSNEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNR 330
           IS +E R LVDI G+ +P      +  Y+   + PQIP  +  SF+ A     ++TMP  
Sbjct: 336 ISPSETRVLVDIRGE-LPR----NLREYMTEQIYPQIPDHLKESFLEACQNARLRTMPAS 390

Query: 331 SMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYL 390
            +P +     G LL+GDA+N+RHPLTGGGMTVAL DI I R LL+ + +L D  A+    
Sbjct: 391 FLPPSSVNKRGVLLLGDAYNLRHPLTGGGMTVALKDIKIWRQLLKDIPDLYDDAAIFQAK 450

Query: 391 ESFYTLRKPVAS-TINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLS 449
           +SF+  RK   S  +N LA ALY++FSA+ D++ +++R+ACF Y  LGG   +GPV LLS
Sbjct: 451 KSFFWSRKRSHSFVVNVLAQALYELFSAT-DDSLRQLRKACFLYFKLGGECLTGPVGLLS 509

Query: 450 GLNPRPLILVFHFFAVAIYGV 470
            L+P PL+L+ HFF+VA+Y  
Sbjct: 510 ILSPDPLLLIRHFFSVAVYAT 530

Catalyzes the first oxygenation step in sterol biosynthesis and is suggested to be one of the rate-limiting enzymes in this pathway.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 3

EC: 2

>sp|Q9C1W3|ERG1_SCHPO Probable squalene monooxygenase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erg1 PE=3 SV=1

 Score =  296 bits (759), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 166/414 (40%), Positives = 235/414 (56%), Gaps = 8/414 (1%)

Query: 71  AGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVF 130
            G AL   L + GR+V V+ERD+SEPDRIVGELLQPGG   L ++G+ D VE ID Q   
Sbjct: 16  TGCALGAALGRQGRKVLVLERDMSEPDRIVGELLQPGGIEALEKIGIADAVEGIDGQWTS 75

Query: 131 GYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLL- 189
           GY +F   +   + YP +       G GFH GRFV  LR+   S PNV + + TV  LL 
Sbjct: 76  GYQIFYGDSNVSVPYPSKPNGGAYQGIGFHYGRFVMNLRKALTSTPNVTVTEATVNELLR 135

Query: 190 EEKG-TIKGVQYKTKAGEELTAY-APLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLEN 247
           +E G  I GV   +K  E    Y APLTIVCDGCFS  R++  +  + V   F+GL+L N
Sbjct: 136 DETGEVITGVVTSSKKSESPVEYKAPLTIVCDGCFSKFRKAFIDHPIQVTDHFLGLILTN 195

Query: 248 CNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQI 307
            +      GHV+L+  +P++ YPISS E R L++ PG+ +P +    +  Y+     P +
Sbjct: 196 PDYIAPGRGHVILSKVAPMVLYPISSTEARILINYPGKNLPPMET--LKKYVLESCVPNM 253

Query: 308 PREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDI 367
           P ++  S  AAV    +++MPN+ +P     T G +L+GD+ NMRHPLTGGGMTV   D 
Sbjct: 254 PEKLRPSLKAAVYNDRLRSMPNQFLPPTVNRTKGMILVGDSNNMRHPLTGGGMTVCFHDA 313

Query: 368 VILRNLL--RHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKE 425
            +L   +    + +L D   + N +  F+  RK  +  IN L+ ALY++F+   +   K 
Sbjct: 314 YLLSRFISPSAVPDLLDYERILNQMNKFHWKRKGYSFVINVLSIALYKLFTPK-NRYMKA 372

Query: 426 MRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPFPS 479
           +   C DY   GG    GP+ LL GL+  P  L+ HF+AV +YG+ + +L  P+
Sbjct: 373 LESGCIDYFKRGGNCVEGPIRLLGGLDHSPSHLIGHFYAVCLYGIYQYVLSGPA 426

Catalyzes the first oxygenation step in sterol biosynthesis and is suggested to be one of the rate-limiting enzymes in this pathway.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 3

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	506
255537956	534	Squalene monooxygenase, putative [Ricinu	0.960	0.910	0.779	0.0
449509255	524	PREDICTED: LOW QUALITY PROTEIN: squalene	0.956	0.923	0.787	0.0
449447091	524	PREDICTED: squalene monooxygenase-like [	0.956	0.923	0.787	0.0
356577688	526	PREDICTED: squalene monooxygenase-like [	0.960	0.923	0.786	0.0
229893912	525	squalene epoxidase [Gynostemma pentaphyl	0.958	0.923	0.773	0.0
356514537	525	PREDICTED: squalene monooxygenase-like [	0.958	0.923	0.776	0.0
225429082	524	PREDICTED: squalene monooxygenase [Vitis	0.950	0.917	0.771	0.0
297736353	488	unnamed protein product [Vitis vinifera]	0.871	0.903	0.833	0.0
449450312	528	PREDICTED: squalene monooxygenase-like [	0.964	0.924	0.774	0.0
222624514	615	hypothetical protein OsJ_10026 [Oryza sa	0.849	0.699	0.848	0.0

>gi|255537956|ref|XP_002510043.1| Squalene monooxygenase, putative [Ricinus communis] gi|223550744|gb|EEF52230.1| Squalene monooxygenase, putative [Ricinus communis]

 Score =  806 bits (2081), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/503 (77%), Positives = 436/503 (86%), Gaps = 17/503 (3%)

Query: 1   MADQYTWGLILGAVLGLVAVYNLGLLALYNLVMRSKSEDNG--------ADSLRKTPTTA 52
           MAD Y  G IL +++GL      GL  +  LV++ + EDN         +DS +     +
Sbjct: 1   MADNYLLGWILCSIIGL-----FGLYYMVYLVVKREEEDNNRKALLQARSDSAKTMSAVS 55

Query: 53  LNGEC----PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGG 108
            NGEC    P DAD+I+VGAGVAG+ALA+TL KDGRRVHVIERDL+EPDRIVGELLQPGG
Sbjct: 56  QNGECRSDNPADADIIIVGAGVAGSALAHTLGKDGRRVHVIERDLTEPDRIVGELLQPGG 115

Query: 109 YLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRL 168
           YLKLIELGLEDCVE+IDAQRVFGYALF DG  TQ+SYPLEKFHSDVAGR FHNGRF+QR+
Sbjct: 116 YLKLIELGLEDCVEEIDAQRVFGYALFMDGKHTQLSYPLEKFHSDVAGRSFHNGRFIQRM 175

Query: 169 REKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRS 228
           REKA+S+PNVRLEQGTVTSL+EEKG I+GV YKTK GEELTA+APLTIVCDGCFSNLRRS
Sbjct: 176 REKASSIPNVRLEQGTVTSLIEEKGIIRGVVYKTKTGEELTAFAPLTIVCDGCFSNLRRS 235

Query: 229 LCNPKVDVPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVP 288
           LCNPKVDVPSCFVGLVLE+C LP++ HGHVVLADPSPILFY ISS EVRCLVD+PGQKVP
Sbjct: 236 LCNPKVDVPSCFVGLVLEDCKLPYQYHGHVVLADPSPILFYQISSTEVRCLVDVPGQKVP 295

Query: 289 SISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDA 348
           SISNGEMA YLK VVAPQ+P EI+ SFVAAVD GNI+TMPNRSMPA+PYPTPGALLMGDA
Sbjct: 296 SISNGEMAKYLKNVVAPQVPPEIYDSFVAAVDKGNIRTMPNRSMPASPYPTPGALLMGDA 355

Query: 349 FNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLA 408
           FNMRHPLTGGGMTVALSDIV+LR LL+ L +L+DAP LC YLESFYTLRKPVASTINTLA
Sbjct: 356 FNMRHPLTGGGMTVALSDIVVLRELLKPLRDLHDAPTLCRYLESFYTLRKPVASTINTLA 415

Query: 409 GALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIY 468
           GALY+VF AS DEAR EMRQACFDYLSLGG+FS+GP+SLLSGLNPRPL LV HFFAVAIY
Sbjct: 416 GALYKVFCASSDEARNEMRQACFDYLSLGGVFSTGPISLLSGLNPRPLSLVVHFFAVAIY 475

Query: 469 GVGRILLPFPSPYRFWIGARIIT 491
           GVGR+LLPFPSP R W+GAR+I+
Sbjct: 476 GVGRLLLPFPSPKRVWVGARLIS 498

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449509255|ref|XP_004163536.1| PREDICTED: LOW QUALITY PROTEIN: squalene monooxygenase-like [Cucumis sativus]

 Score =  803 bits (2075), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/494 (78%), Positives = 435/494 (88%), Gaps = 10/494 (2%)

Query: 1   MADQYTWGLILGAVLGLVAVYNLGLLALYNLVMRSKSEDNGADSLRKTPTTALNGECPF- 59
           M DQ   G IL +VLG  A+Y      L+       S +   +SL+   TT  NGEC   
Sbjct: 1   MVDQCALGWILASVLGASALY-----LLFGKKTAXVSNERRRESLKNIATT--NGECKSS 53

Query: 60  --DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGL 117
             D D+I+VGAGVAG+ALA TLAKDGR+VHVIERDLSEPDRIVGELLQPGGYLKL ELGL
Sbjct: 54  NSDGDIIIVGAGVAGSALAYTLAKDGRQVHVIERDLSEPDRIVGELLQPGGYLKLTELGL 113

Query: 118 EDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPN 177
           EDCV++IDAQRV+GYALFKDG  T++SYPLEKFHSDV+GR FHNGRF+QR+REKAASLPN
Sbjct: 114 EDCVDEIDAQRVYGYALFKDGKDTRLSYPLEKFHSDVSGRSFHNGRFIQRMREKAASLPN 173

Query: 178 VRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVP 237
           VRLEQGTVTSLLEE GTI+GVQYK K+G+E+TAYAPLTIVCDGCFSNLRRSLCNPKVDVP
Sbjct: 174 VRLEQGTVTSLLEENGTIRGVQYKNKSGQEMTAYAPLTIVCDGCFSNLRRSLCNPKVDVP 233

Query: 238 SCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMAN 297
           SCFVGL+LENC+LP  NHGHV+LADPSPILFYPISS E+RCLVD+PGQKVPSISNGEMAN
Sbjct: 234 SCFVGLILENCDLPHANHGHVILADPSPILFYPISSTEIRCLVDVPGQKVPSISNGEMAN 293

Query: 298 YLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTG 357
           YLK VVAPQIP ++++SF+AA+D GNI+TMPNRSMPA PYPTPGALLMGDAFNMRHPLTG
Sbjct: 294 YLKNVVAPQIPPQLYNSFIAAIDKGNIRTMPNRSMPADPYPTPGALLMGDAFNMRHPLTG 353

Query: 358 GGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSA 417
           GGMTVALSDIV+LR+LL+ L +LNDAP LC YLE+FYTLRKPVASTINTLAGALY+VF A
Sbjct: 354 GGMTVALSDIVVLRDLLKPLRDLNDAPTLCKYLEAFYTLRKPVASTINTLAGALYKVFCA 413

Query: 418 SPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPF 477
           SPD+ARKEMRQACFDYLSLGGIFS+GPVSLLSGLNPRPL LV HFFAVAIYGVGR+L+PF
Sbjct: 414 SPDQARKEMRQACFDYLSLGGIFSNGPVSLLSGLNPRPLSLVLHFFAVAIYGVGRLLIPF 473

Query: 478 PSPYRFWIGARIIT 491
           PSP R WIGAR+I+
Sbjct: 474 PSPKRVWIGARLIS 487

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447091|ref|XP_004141303.1| PREDICTED: squalene monooxygenase-like [Cucumis sativus]

 Score =  802 bits (2071), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/494 (78%), Positives = 435/494 (88%), Gaps = 10/494 (2%)

Query: 1   MADQYTWGLILGAVLGLVAVYNLGLLALYNLVMRSKSEDNGADSLRKTPTTALNGECPF- 59
           M DQ   G IL +VLG  A+Y      L+       S +   +SL+   TT  NGEC   
Sbjct: 1   MVDQCALGWILASVLGASALY-----LLFGKKNCGVSNERRRESLKNIATT--NGECKSS 53

Query: 60  --DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGL 117
             D D+I+VGAGVAG+ALA TLAKDGR+VHVIERDLSEPDRIVGELLQPGGYLKL ELGL
Sbjct: 54  NSDGDIIIVGAGVAGSALAYTLAKDGRQVHVIERDLSEPDRIVGELLQPGGYLKLTELGL 113

Query: 118 EDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPN 177
           EDCV++IDAQRV+GYALFKDG  T++SYPLEKFHSDV+GR FHNGRF+QR+REKAASLPN
Sbjct: 114 EDCVDEIDAQRVYGYALFKDGKDTRLSYPLEKFHSDVSGRSFHNGRFIQRMREKAASLPN 173

Query: 178 VRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVP 237
           VRLEQGTVTSLLEE GTI+GVQYK K+G+E+TAYAPLTIVCDGCFSNLRRSLCNPKVDVP
Sbjct: 174 VRLEQGTVTSLLEENGTIRGVQYKNKSGQEMTAYAPLTIVCDGCFSNLRRSLCNPKVDVP 233

Query: 238 SCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMAN 297
           SCFVGL+LENC+LP  NHGHV+LADPSPILFYPISS E+RCLVD+PGQKVPSISNGEMAN
Sbjct: 234 SCFVGLILENCDLPHANHGHVILADPSPILFYPISSTEIRCLVDVPGQKVPSISNGEMAN 293

Query: 298 YLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTG 357
           YLK VVAPQIP ++++SF+AA+D GNI+TMPNRSMPA PYPTPGALLMGDAFNMRHPLTG
Sbjct: 294 YLKNVVAPQIPPQLYNSFIAAIDKGNIRTMPNRSMPADPYPTPGALLMGDAFNMRHPLTG 353

Query: 358 GGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSA 417
           GGMTVALSDIV+LR+LL+ L +LNDAP LC YLE+FYTLRKPVASTINTLAGALY+VF A
Sbjct: 354 GGMTVALSDIVVLRDLLKPLRDLNDAPTLCKYLEAFYTLRKPVASTINTLAGALYKVFCA 413

Query: 418 SPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPF 477
           SPD+ARKEMRQACFDYLSLGGIFS+GPVSLLSGLNPRPL LV HFFAVAIYGVGR+L+PF
Sbjct: 414 SPDQARKEMRQACFDYLSLGGIFSNGPVSLLSGLNPRPLSLVLHFFAVAIYGVGRLLIPF 473

Query: 478 PSPYRFWIGARIIT 491
           PSP R WIGAR+I+
Sbjct: 474 PSPKRVWIGARLIS 487

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577688|ref|XP_003556956.1| PREDICTED: squalene monooxygenase-like [Glycine max]

 Score =  794 bits (2051), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/496 (78%), Positives = 431/496 (86%), Gaps = 10/496 (2%)

Query: 1   MADQYTWGLILGAVLGLVAVYNLGLLALYNLVMRSKSEDNGADSLRKTPTTALNGECPF- 59
           MAD    G IL + L L A+Y+L     +    R+++     + L +T TT+  GEC   
Sbjct: 1   MADLSVLGWILCSALSLFALYSLA----FGGASRNRASPEKRNELSETVTTS-AGECRSE 55

Query: 60  ----DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIEL 115
               DADVI+VGAGVAGA+LA+TL KDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIEL
Sbjct: 56  KHHGDADVIIVGAGVAGASLAHTLGKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIEL 115

Query: 116 GLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASL 175
           GLEDCV++IDAQ+VFGYALFKDG  T++SYPLEKFHSDV+GR FHNGRF+QRLREKAASL
Sbjct: 116 GLEDCVDKIDAQQVFGYALFKDGKHTRLSYPLEKFHSDVSGRSFHNGRFIQRLREKAASL 175

Query: 176 PNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVD 235
            NVRLEQGTVTSL+EEKGTIKGVQYK K G+ELT YAPLTIVCDGCFSNLRRSLCNPKVD
Sbjct: 176 ANVRLEQGTVTSLVEEKGTIKGVQYKNKDGQELTTYAPLTIVCDGCFSNLRRSLCNPKVD 235

Query: 236 VPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEM 295
           +PSCFVGLVLENC LP  NHGHV+L DPSPILFYPISS E+RCLVD+PGQKVPSISNGEM
Sbjct: 236 IPSCFVGLVLENCELPCANHGHVILGDPSPILFYPISSTEIRCLVDVPGQKVPSISNGEM 295

Query: 296 ANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPL 355
             YLKT+VAPQIP +++ +F+AAVD GNI+TMPNRSMPA P+PTPGALLMGDAFNMRHPL
Sbjct: 296 EKYLKTMVAPQIPPQLYDAFIAAVDKGNIRTMPNRSMPADPHPTPGALLMGDAFNMRHPL 355

Query: 356 TGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVF 415
           TGGGMTVALSDIV+LRNLL  LS+LNDAP LC YLESFYTLRKPVASTINTLAGALY+VF
Sbjct: 356 TGGGMTVALSDIVVLRNLLSPLSDLNDAPTLCKYLESFYTLRKPVASTINTLAGALYKVF 415

Query: 416 SASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILL 475
            ASPD ARKEMRQACFDYLSLGG+FS GPVSLLSGLNPRPL LV HFFAVAIYGVGR+LL
Sbjct: 416 CASPDLARKEMRQACFDYLSLGGLFSEGPVSLLSGLNPRPLSLVLHFFAVAIYGVGRLLL 475

Query: 476 PFPSPYRFWIGARIIT 491
           PFPSP R WIGAR+I+
Sbjct: 476 PFPSPKRVWIGARLIS 491

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|229893912|gb|ACQ90301.1| squalene epoxidase [Gynostemma pentaphyllum]

 Score =  783 bits (2022), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/494 (77%), Positives = 427/494 (86%), Gaps = 9/494 (1%)

Query: 1   MADQYTWGLILGAVLGLVAVYNLGLLALYNLVMRSKSEDNGADSLRKTPTTALNGECPF- 59
           M DQ++   I  +VLG VA Y    L L N + R   E    +SL+   TT  NGEC   
Sbjct: 1   MVDQFSLAFIFASVLGAVAFY---YLFLRNRIFRVSREPR-RESLKNIATT--NGECKSS 54

Query: 60  --DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGL 117
             D D+I+VGAGVAG+ALA TL KDGRRVHVIERDL+EPDR VGELLQPGGYLKL ELGL
Sbjct: 55  YSDGDIIIVGAGVAGSALAYTLGKDGRRVHVIERDLTEPDRTVGELLQPGGYLKLTELGL 114

Query: 118 EDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPN 177
           EDCV +IDAQRV+GYALFKDG  T++SYPLEKFHSDV+GR FHNGRF+QR+REKAA+LPN
Sbjct: 115 EDCVNEIDAQRVYGYALFKDGKDTKLSYPLEKFHSDVSGRSFHNGRFIQRMREKAATLPN 174

Query: 178 VRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVP 237
           VRLEQGTVTSLLEE G IKGVQYK+K G+E+TAYAPLTIVCDGCFSNLRRSLCNPKVDVP
Sbjct: 175 VRLEQGTVTSLLEENGIIKGVQYKSKTGQEMTAYAPLTIVCDGCFSNLRRSLCNPKVDVP 234

Query: 238 SCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMAN 297
           SCFV LVLENC LP  N+GHV+LADPSPILFYPISS EVRCLVD+PGQKVPSISNGEMAN
Sbjct: 235 SCFVALVLENCELPHANYGHVILADPSPILFYPISSTEVRCLVDVPGQKVPSISNGEMAN 294

Query: 298 YLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTG 357
           YLK+VVAPQIP +I+ +  +  D GNI+TMPNRSMPA PYPTPGALLMGDAFNMRHPLTG
Sbjct: 295 YLKSVVAPQIPPQIYDALRSCYDKGNIRTMPNRSMPADPYPTPGALLMGDAFNMRHPLTG 354

Query: 358 GGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSA 417
           GGMTVALSDIV+LR+LL+ L +L+DAP L NYLE+FYTLRKPVASTINTLAGALY+VF A
Sbjct: 355 GGMTVALSDIVVLRDLLKPLRDLHDAPILSNYLEAFYTLRKPVASTINTLAGALYKVFCA 414

Query: 418 SPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPF 477
           SPD+AR+EMRQACFDYLSLGG+FS+GPVSLLSGLNPRPL LV HFFAVAIYGVGR+L+PF
Sbjct: 415 SPDQARREMRQACFDYLSLGGVFSNGPVSLLSGLNPRPLSLVLHFFAVAIYGVGRLLIPF 474

Query: 478 PSPYRFWIGARIIT 491
           PSP R WIGAR+I+
Sbjct: 475 PSPRRVWIGARLIS 488

Source: Gynostemma pentaphyllum

Species: Gynostemma pentaphyllum

Genus: Gynostemma

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514537|ref|XP_003525962.1| PREDICTED: squalene monooxygenase-like [Glycine max]

 Score =  782 bits (2019), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/497 (77%), Positives = 423/497 (85%), Gaps = 12/497 (2%)

Query: 1   MADQYTWGLILGAVLGLVAVYNLGLLALYNLVMRSKSEDNGADSLRKTPT-TALNGECPF 59
           M D Y  G I+ AVL LVA+ N      +    +++   +  D+ R+    T   GEC  
Sbjct: 1   MVDPYVLGWIICAVLSLVALRN------FAFARKNRCHSSETDATRRAENVTTAAGECRS 54

Query: 60  -----DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIE 114
                D DVI+VGAGVAG+ALA+TL KDGRRV VIERDLSE DRIVGELLQPGGYLKLIE
Sbjct: 55  SSRDGDVDVIIVGAGVAGSALAHTLGKDGRRVLVIERDLSEQDRIVGELLQPGGYLKLIE 114

Query: 115 LGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAAS 174
           LGLEDCVE+IDAQ VFGYALFKDG  T++SYPLEKFHSDVAGR FHNGRF+QR+REKAAS
Sbjct: 115 LGLEDCVEKIDAQLVFGYALFKDGKHTRLSYPLEKFHSDVAGRSFHNGRFIQRMREKAAS 174

Query: 175 LPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKV 234
           L NVRLEQGTVTSLLEEKG IKGV YKTK  +EL+A APLT+VCDGCFSNLRRSLCNPKV
Sbjct: 175 LSNVRLEQGTVTSLLEEKGVIKGVHYKTKDSQELSACAPLTVVCDGCFSNLRRSLCNPKV 234

Query: 235 DVPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGE 294
           DVPS FVGL+LE+C LP+ NHGHV+L DPSP+LFY ISS+E+RCLVD+PGQKVPSISNGE
Sbjct: 235 DVPSHFVGLILESCELPYANHGHVILGDPSPVLFYRISSSEIRCLVDVPGQKVPSISNGE 294

Query: 295 MANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHP 354
           M NYLKTVVAPQIP E+  SFVAAVD GNI+TMPNRSMPAAPYPTPGALLMGDAFNMRHP
Sbjct: 295 MTNYLKTVVAPQIPPELHDSFVAAVDKGNIRTMPNRSMPAAPYPTPGALLMGDAFNMRHP 354

Query: 355 LTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQV 414
           LTGGGMTVALSDIV+LRNLLR L +LNDAP LC YLESFYTLRKPVASTINTLAGALY+V
Sbjct: 355 LTGGGMTVALSDIVVLRNLLRPLRDLNDAPGLCKYLESFYTLRKPVASTINTLAGALYKV 414

Query: 415 FSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRIL 474
           F ASPD ARKEMRQACFDYLSLGG+FS GPVSLLSGLNPRPL LV HFFAVAIYGVGR+L
Sbjct: 415 FCASPDPARKEMRQACFDYLSLGGLFSEGPVSLLSGLNPRPLSLVLHFFAVAIYGVGRLL 474

Query: 475 LPFPSPYRFWIGARIIT 491
           LPFPSP R WIG R+I+
Sbjct: 475 LPFPSPKRMWIGVRLIS 491

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429082|ref|XP_002271528.1| PREDICTED: squalene monooxygenase [Vitis vinifera]

 Score =  781 bits (2018), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/495 (77%), Positives = 428/495 (86%), Gaps = 14/495 (2%)

Query: 5   YTWGLILGAVLGLVAVYNLGLLALYNLVMRSKSEDNGADSLRKTP----TTALNGEC--P 58
           Y W      VLG +    LG L L     +      G   + K       ++ NGEC   
Sbjct: 3   YQW------VLGGIVASLLGFLLLDRSRGKRVKSRAGGHLMEKMKDECVKSSANGECCSG 56

Query: 59  FDA--DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELG 116
           FD   DVIVVGAGVAG+ALA+TL KDGRRVHVIERDLS+PDRIVGELLQPGGYLKLIELG
Sbjct: 57  FDGGTDVIVVGAGVAGSALAHTLGKDGRRVHVIERDLSQPDRIVGELLQPGGYLKLIELG 116

Query: 117 LEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLP 176
           LEDC+ +IDAQRV GYAL+KDG   ++SYPLE+FHSDVAGR FHNGRFVQR+REKAASLP
Sbjct: 117 LEDCLNEIDAQRVLGYALYKDGKNARLSYPLEQFHSDVAGRSFHNGRFVQRMREKAASLP 176

Query: 177 NVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDV 236
           NV++EQGTVTSL+EEKG+IKGVQY+TKAGEEL AYAPLTIVCDGCFSNLRRSLCNPKVDV
Sbjct: 177 NVKMEQGTVTSLIEEKGSIKGVQYRTKAGEELKAYAPLTIVCDGCFSNLRRSLCNPKVDV 236

Query: 237 PSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMA 296
           PSCFVGLVLENC LP  NHGHV+LADPSPILFYPISSNE+RCLVD+PGQKVPSI+NGEMA
Sbjct: 237 PSCFVGLVLENCQLPHANHGHVILADPSPILFYPISSNEIRCLVDVPGQKVPSIANGEMA 296

Query: 297 NYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLT 356
            YLKTVVAPQIP E+ ++F++A+D GN+KTMPNRSMPA+PYPTPGALLMGDAFNMRHPLT
Sbjct: 297 CYLKTVVAPQIPPELHNAFISAIDKGNVKTMPNRSMPASPYPTPGALLMGDAFNMRHPLT 356

Query: 357 GGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFS 416
           GGGMTVALSDIV+LR+LL+ L NLNDA ALC YLE+FYTLRKPVASTINTLAGALY+VF 
Sbjct: 357 GGGMTVALSDIVVLRDLLKPLQNLNDAAALCKYLEAFYTLRKPVASTINTLAGALYKVFC 416

Query: 417 ASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLP 476
           ASPD+ARKEMR+ACFDYLSLGGIFS+GP++LLSGLNPRPL LV HFFAVA+YGVGR+LLP
Sbjct: 417 ASPDQARKEMREACFDYLSLGGIFSNGPIALLSGLNPRPLSLVLHFFAVAVYGVGRLLLP 476

Query: 477 FPSPYRFWIGARIIT 491
           FPSP R WIGAR+I+
Sbjct: 477 FPSPKRMWIGARLIS 491

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736353|emb|CBI25076.3| unnamed protein product [Vitis vinifera]

 Score =  780 bits (2014), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/445 (83%), Positives = 414/445 (93%), Gaps = 4/445 (0%)

Query: 51  TALNGEC--PFDA--DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQP 106
           ++ NGEC   FD   DVIVVGAGVAG+ALA+TL KDGRRVHVIERDLS+PDRIVGELLQP
Sbjct: 11  SSANGECCSGFDGGTDVIVVGAGVAGSALAHTLGKDGRRVHVIERDLSQPDRIVGELLQP 70

Query: 107 GGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQ 166
           GGYLKLIELGLEDC+ +IDAQRV GYAL+KDG   ++SYPLE+FHSDVAGR FHNGRFVQ
Sbjct: 71  GGYLKLIELGLEDCLNEIDAQRVLGYALYKDGKNARLSYPLEQFHSDVAGRSFHNGRFVQ 130

Query: 167 RLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLR 226
           R+REKAASLPNV++EQGTVTSL+EEKG+IKGVQY+TKAGEEL AYAPLTIVCDGCFSNLR
Sbjct: 131 RMREKAASLPNVKMEQGTVTSLIEEKGSIKGVQYRTKAGEELKAYAPLTIVCDGCFSNLR 190

Query: 227 RSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQK 286
           RSLCNPKVDVPSCFVGLVLENC LP  NHGHV+LADPSPILFYPISSNE+RCLVD+PGQK
Sbjct: 191 RSLCNPKVDVPSCFVGLVLENCQLPHANHGHVILADPSPILFYPISSNEIRCLVDVPGQK 250

Query: 287 VPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMG 346
           VPSI+NGEMA YLKTVVAPQIP E+ ++F++A+D GN+KTMPNRSMPA+PYPTPGALLMG
Sbjct: 251 VPSIANGEMACYLKTVVAPQIPPELHNAFISAIDKGNVKTMPNRSMPASPYPTPGALLMG 310

Query: 347 DAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINT 406
           DAFNMRHPLTGGGMTVALSDIV+LR+LL+ L NLNDA ALC YLE+FYTLRKPVASTINT
Sbjct: 311 DAFNMRHPLTGGGMTVALSDIVVLRDLLKPLQNLNDAAALCKYLEAFYTLRKPVASTINT 370

Query: 407 LAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVA 466
           LAGALY+VF ASPD+ARKEMR+ACFDYLSLGGIFS+GP++LLSGLNPRPL LV HFFAVA
Sbjct: 371 LAGALYKVFCASPDQARKEMREACFDYLSLGGIFSNGPIALLSGLNPRPLSLVLHFFAVA 430

Query: 467 IYGVGRILLPFPSPYRFWIGARIIT 491
           +YGVGR+LLPFPSP R WIGAR+I+
Sbjct: 431 VYGVGRLLLPFPSPKRMWIGARLIS 455

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450312|ref|XP_004142907.1| PREDICTED: squalene monooxygenase-like [Cucumis sativus]

 Score =  779 bits (2012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/493 (77%), Positives = 421/493 (85%), Gaps = 5/493 (1%)

Query: 1   MADQYTWGLILGAVLGLVAVYNLGLLALYNLVMRSKSEDNGADSLRKTPTTALNGECPF- 59
           M D  T+G I  A L  V  ++  L    N   R  +     D L  + TT  NGEC   
Sbjct: 1   MVDHCTFGWIFSAFLAFVIAFSFFLSPRKNRRGRGTNSTPRRDCLSSSATT--NGECRSV 58

Query: 60  --DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGL 117
             DADVI+VGAGVAG+ALA+TL KDGRRVHVIERDL+EPDRIVGELLQPGGYLKLIELGL
Sbjct: 59  DGDADVIIVGAGVAGSALAHTLGKDGRRVHVIERDLTEPDRIVGELLQPGGYLKLIELGL 118

Query: 118 EDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPN 177
           +DCVE+IDAQ+V+GYALFKDG  T++SYPLE F SDV+GR FHNGRF+QR+REKAA LPN
Sbjct: 119 QDCVEEIDAQKVYGYALFKDGKSTRLSYPLENFQSDVSGRSFHNGRFIQRMREKAAFLPN 178

Query: 178 VRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVP 237
           VRLEQGTVTSLLEEKGTI GVQYK+K GE+ TAYAPLTIVCDGCFSNLRRSLCNP VDVP
Sbjct: 179 VRLEQGTVTSLLEEKGTITGVQYKSKNGEQKTAYAPLTIVCDGCFSNLRRSLCNPMVDVP 238

Query: 238 SCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMAN 297
           SCFVGLVLENC LP+ N GHVVL DPSPILFYPISS E+RCLVD+PGQKVPSISNGEM  
Sbjct: 239 SCFVGLVLENCQLPYANLGHVVLGDPSPILFYPISSTEIRCLVDVPGQKVPSISNGEMEK 298

Query: 298 YLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTG 357
           YLKTVVAPQ+P +I  +F+AA++ GNI+TMPNRSMPAAP PTPGALLMGDAFNMRHPLTG
Sbjct: 299 YLKTVVAPQVPPQIHDAFIAAIEKGNIRTMPNRSMPAAPQPTPGALLMGDAFNMRHPLTG 358

Query: 358 GGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSA 417
           GGMTVALSDIV+LRNLL+ L +LNDAP LC YLESFYTLRKPVASTINTLAGALY+VF A
Sbjct: 359 GGMTVALSDIVVLRNLLKPLKDLNDAPTLCKYLESFYTLRKPVASTINTLAGALYKVFCA 418

Query: 418 SPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPF 477
           S D+ARKEMRQACFDYLSLGGIFS+GPVSLLSGLNPRPL LV HFFAVAIYGVGR+LLPF
Sbjct: 419 SSDQARKEMRQACFDYLSLGGIFSNGPVSLLSGLNPRPLSLVLHFFAVAIYGVGRLLLPF 478

Query: 478 PSPYRFWIGARII 490
           PSP   WIGAR++
Sbjct: 479 PSPKGIWIGARLV 491

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222624514|gb|EEE58646.1| hypothetical protein OsJ_10026 [Oryza sativa Japonica Group]

 Score =  773 bits (1997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/430 (84%), Positives = 403/430 (93%)

Query: 62  DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCV 121
           DVIVVGAGVAG+ALA TL KDGRRVHVIERDL+EPDRIVGELLQPGGYLKLIELGLEDCV
Sbjct: 66  DVIVVGAGVAGSALAYTLGKDGRRVHVIERDLTEPDRIVGELLQPGGYLKLIELGLEDCV 125

Query: 122 EQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLE 181
           ++IDAQRV GYALFKDG  T++SYPLEKFHSDVAGR FHNGRF+QR+R+KAASLPNV+LE
Sbjct: 126 QEIDAQRVLGYALFKDGKDTKLSYPLEKFHSDVAGRSFHNGRFIQRMRQKAASLPNVQLE 185

Query: 182 QGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFV 241
           QGTVTSL+EE GT+KGV+YKTK+GEEL AYAPLTIVCDGCFSNLRR+LC+PKVDVPSCFV
Sbjct: 186 QGTVTSLVEEDGTVKGVKYKTKSGEELKAYAPLTIVCDGCFSNLRRALCSPKVDVPSCFV 245

Query: 242 GLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMANYLKT 301
           GLVLENC LP  NHGHVVLA+PSPILFYPISS EVRCLVD+PGQKVPSI+NGEMA YLKT
Sbjct: 246 GLVLENCQLPHANHGHVVLANPSPILFYPISSTEVRCLVDVPGQKVPSIANGEMAKYLKT 305

Query: 302 VVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMT 361
           VVAPQIP EI+ SF+AA+D G+I+TMPNRSMPAAP+PTPGALLMGDAFNMRHPLTGGGMT
Sbjct: 306 VVAPQIPPEIYDSFIAAIDKGSIRTMPNRSMPAAPHPTPGALLMGDAFNMRHPLTGGGMT 365

Query: 362 VALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDE 421
           VALSDIV+LRNLL+ L NL+DA ALC YLESFYTLRKPVASTINTLAGALY+VFSASPD+
Sbjct: 366 VALSDIVVLRNLLKPLRNLHDASALCKYLESFYTLRKPVASTINTLAGALYKVFSASPDQ 425

Query: 422 ARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPFPSPY 481
           AR EMRQACFDYLSLGG+FS+GP++LLSGLNPRPL LV HFFAVAIYGVGR++LP PSP 
Sbjct: 426 ARNEMRQACFDYLSLGGVFSNGPIALLSGLNPRPLSLVAHFFAVAIYGVGRLMLPLPSPK 485

Query: 482 RFWIGARIIT 491
           R WIG R+I+
Sbjct: 486 RMWIGVRLIS 495

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	506
TAIR|locus:2037660	531	XF1 [Arabidopsis thaliana (tax	0.901	0.858	0.742	2e-184
TAIR|locus:2137569	525	SQE3 "squalene epoxidase 3" [A	0.897	0.864	0.718	1.4e-176
TAIR|locus:2059196	585	SQE2 "squalene epoxidase 2" [A	0.903	0.781	0.718	4.1e-175
TAIR|locus:2151857	516	SQP1 [Arabidopsis thaliana (ta	0.845	0.829	0.508	7.3e-114
TAIR|locus:2151832	517	SQE6 "squalene monoxygenase 6"	0.837	0.820	0.485	6.3e-108
DICTYBASE|DDB_G0293584	502	sqle "squalene monooxygenase"	0.521	0.525	0.534	1.9e-106
TAIR|locus:2167423	516	SQP2 "squalene monooxygenase 2	0.847	0.831	0.479	7.5e-105
ZFIN|ZDB-GENE-071004-98	557	zgc:171801 "zgc:171801" [Danio	0.816	0.741	0.448	6.7e-88
UNIPROTKB|A5D9A8	572	SQLE "Squalene monooxygenase"	0.796	0.704	0.455	1.4e-87
UNIPROTKB|E7EVQ6	479	SQLE "Squalene monooxygenase"	0.800	0.845	0.462	1.4e-87

TAIR|locus:2037660 XF1 [Arabidopsis thaliana (taxid:3702)]

 Score = 1789 (634.8 bits), Expect = 2.0e-184, P = 2.0e-184
 Identities = 343/462 (74%), Positives = 387/462 (83%)

Query:    36 KSEDNGADSLRKTPTTALN--GECPFD----ADVIXXXXXXXXXXLANTLAKDGRRVHVI 89
             K + NG    RKT +T  +  G         ADVI          LA TL KD RRVHVI
Sbjct:    30 KPKRNGLRHDRKTVSTVTSDVGSVNITGDTVADVIVVGAGVAGSALAYTLGKDKRRVHVI 89

Query:    90 ERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEK 149
             ERDLSEPDRIVGELLQPGGYLKL+ELG+EDCVE+IDAQRV+GYALFK+G R +++YPLEK
Sbjct:    90 ERDLSEPDRIVGELLQPGGYLKLLELGIEDCVEEIDAQRVYGYALFKNGKRIRLAYPLEK 149

Query:   150 FHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELT 209
             FH DV+GR FHNGRF+QR+REKAASLPNV+LEQGTV SLLEE GTIKGV+YK KAGEE T
Sbjct:   150 FHEDVSGRSFHNGRFIQRMREKAASLPNVQLEQGTVLSLLEENGTIKGVRYKNKAGEEQT 209

Query:   210 AYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLADPSPILFY 269
             A+A LTIVCDGCFSNLRRSLCNP+V+VPSCFVGLVLENCNLP+ NHGHVVLADPSPIL Y
Sbjct:   210 AFAALTIVCDGCFSNLRRSLCNPQVEVPSCFVGLVLENCNLPYANHGHVVLADPSPILMY 269

Query:   270 PISSNEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPN 329
             PISS EVRCLVD+PGQKVPSI+NGEM NYLKTVVAPQ+P E++ SF+AAVD GNIK+MPN
Sbjct:   270 PISSTEVRCLVDVPGQKVPSIANGEMKNYLKTVVAPQMPHEVYDSFIAAVDKGNIKSMPN 329

Query:   330 RSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVIXXXXXXXXXXXXDAPALCNY 389
             RSMPA+PYPTPGALLMGDAFNMRHPLTGGGMTVAL+DIV+            D  +LC Y
Sbjct:   330 RSMPASPYPTPGALLMGDAFNMRHPLTGGGMTVALADIVVLRNLLRPLRDLSDGASLCKY 389

Query:   390 LESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLS 449
             LESFYTLRKPVA+TINTLA ALYQVF +S +EAR EMR+ACFDYL LGG+ +SGPVSLLS
Sbjct:   390 LESFYTLRKPVAATINTLANALYQVFCSSENEARNEMREACFDYLGLGGMCTSGPVSLLS 449

Query:   450 GLNPRPLILVFHFFAVAIYGVGRILLPFPSPYRFWIGARIIT 491
             GLNPRPL LV HFFAVA+YGV R+L+PFPSP R W+GA++I+
Sbjct:   450 GLNPRPLTLVCHFFAVAVYGVIRLLIPFPSPKRIWLGAKLIS 491

GO:0004506 "squalene monooxygenase activity" evidence=IEA;IGI

GO:0005576 "extracellular region" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009228 "thiamine biosynthetic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016126 "sterol biosynthetic process" evidence=RCA;IMP;TAS

GO:0009414 "response to water deprivation" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

TAIR|locus:2137569 SQE3 "squalene epoxidase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1715 (608.8 bits), Expect = 1.4e-176, P = 1.4e-176
 Identities = 329/458 (71%), Positives = 384/458 (83%)

Query:    34 RSKSEDNGADSLRKTPTTALNGECPFDADVIXXXXXXXXXXLANTLAKDGRRVHVIERDL 93
             RSK+  +G+ ++R    T  +G    D D+I          LA+TL K+GRRVHVIERDL
Sbjct:    32 RSKTI-HGSVNVRNGTLTVKSGT---DVDIIIVGAGVAGAALAHTLGKEGRRVHVIERDL 87

Query:    94 SEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSD 153
             +EPDRIVGELLQPGGYLKLIELGLEDCV+ IDAQRV GYALFKDG  T++SYPL++F SD
Sbjct:    88 TEPDRIVGELLQPGGYLKLIELGLEDCVKDIDAQRVLGYALFKDGKHTKLSYPLDQFDSD 147

Query:   154 VAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAP 213
             VAGR FHNGRFVQR+REKA+ LPNVR+EQGTVTSL+EE G IKGVQYKTK G+EL ++AP
Sbjct:   148 VAGRSFHNGRFVQRMREKASLLPNVRMEQGTVTSLVEENGIIKGVQYKTKDGQELKSFAP 207

Query:   214 LTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISS 273
             LTIVCDGCFSNLRRSLC PKV+VPS FVGLVLENC LPF NHGHVVL DPSPILFYPISS
Sbjct:   208 LTIVCDGCFSNLRRSLCKPKVEVPSNFVGLVLENCELPFPNHGHVVLGDPSPILFYPISS 267

Query:   274 NEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMP 333
             +EVRCLVD+PG K+PS+++GEMA++LKT+VAPQ+P +I  +F++AV+ GNI+TMPNRSMP
Sbjct:   268 SEVRCLVDVPGSKLPSVASGEMAHHLKTMVAPQVPPQIRDAFISAVEKGNIRTMPNRSMP 327

Query:   334 AAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVIXXXXXXXXXXXXDAPALCNYLESF 393
             A P  TPGALL+GDAFNMRHPLTGGGMTVALSDIVI            +  +L  Y+ESF
Sbjct:   328 ADPIHTPGALLLGDAFNMRHPLTGGGMTVALSDIVILRDLLNPLVDLTNKESLSKYIESF 387

Query:   394 YTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNP 453
             YTLRKPVASTINTLAGALY+VF ASPD+AR EMR+ACFDYLSLGG+ SSGPV+LLSGLNP
Sbjct:   388 YTLRKPVASTINTLAGALYKVFLASPDDARSEMRRACFDYLSLGGVCSSGPVALLSGLNP 447

Query:   454 RPLILVFHFFAVAIYGVGRILLPFPSPYRFWIGARIIT 491
             RP+ LV HFFAVAI+GVGR+L+P PS  R W+GAR+I+
Sbjct:   448 RPMSLVLHFFAVAIFGVGRLLVPLPSVKRLWLGARLIS 485

GO:0004506 "squalene monooxygenase activity" evidence=IEA;IGI

GO:0005576 "extracellular region" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016126 "sterol biosynthetic process" evidence=RCA;TAS

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

TAIR|locus:2059196 SQE2 "squalene epoxidase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1701 (603.8 bits), Expect = 4.1e-175, P = 4.1e-175
 Identities = 330/459 (71%), Positives = 373/459 (81%)

Query:    35 SKSEDNGADSLRKTPTTALNGECPFDA--DVIXXXXXXXXXXLANTLAKDGRRVHVIERD 92
             +K++ N    + +  T + N E   D+  DVI          LA+TL K+GRRVHVIERD
Sbjct:    95 NKNKKNRGLVVSQNDTVSKNLETEVDSGTDVIIVGAGVAGSALAHTLGKEGRRVHVIERD 154

Query:    93 LSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHS 152
              SE DRIVGELLQPGGYLKLIELGLEDCV++IDAQRV GY LFKDG  T+++YPLE F S
Sbjct:   155 FSEQDRIVGELLQPGGYLKLIELGLEDCVKKIDAQRVLGYVLFKDGKHTKLAYPLETFDS 214

Query:   153 DVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYA 212
             DVAGR FHNGRFVQR+REKA +L NVRLEQGTVTSLLEE GTIKGV+Y+TK G E  ++A
Sbjct:   215 DVAGRSFHNGRFVQRMREKALTLSNVRLEQGTVTSLLEEHGTIKGVRYRTKEGNEFRSFA 274

Query:   213 PLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPIS 272
             PLTIVCDGCFSNLRRSLC PKVDVPS FVGLVLENC LPF NHGHVVL DPSPIL YPIS
Sbjct:   275 PLTIVCDGCFSNLRRSLCKPKVDVPSTFVGLVLENCELPFANHGHVVLGDPSPILMYPIS 334

Query:   273 SNEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSM 332
             S+EVRCLVD+PGQK+P I+NGEMA YLKT VAPQ+P ++  +F+ AV+ GNI+TMPNRSM
Sbjct:   335 SSEVRCLVDVPGQKLPPIANGEMAKYLKTRVAPQVPTKVREAFITAVEKGNIRTMPNRSM 394

Query:   333 PAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVIXXXXXXXXXXXXDAPALCNYLES 392
             PA P PTPGALL+GDAFNMRHPLTGGGMTVAL+DIV+            D  AL  Y+ES
Sbjct:   395 PADPIPTPGALLLGDAFNMRHPLTGGGMTVALADIVVLRDLLRPIRNLNDKEALSKYIES 454

Query:   393 FYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLN 452
             FYTLRKPVASTINTLA ALY+VF AS DEAR EMR+ACFDYLSLGG+FSSGPV+LLSGLN
Sbjct:   455 FYTLRKPVASTINTLADALYKVFLASSDEARTEMREACFDYLSLGGVFSSGPVALLSGLN 514

Query:   453 PRPLILVFHFFAVAIYGVGRILLPFPSPYRFWIGARIIT 491
             PRPL LV HFFAVAIY V R++LPFPS   FW+GARII+
Sbjct:   515 PRPLSLVLHFFAVAIYAVCRLMLPFPSIESFWLGARIIS 553

GO:0004506 "squalene monooxygenase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016126 "sterol biosynthetic process" evidence=RCA;TAS

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

TAIR|locus:2151857 SQP1 [Arabidopsis thaliana (taxid:3702)]

 Score = 1123 (400.4 bits), Expect = 7.3e-114, P = 7.3e-114
 Identities = 219/431 (50%), Positives = 288/431 (66%)

Query:    62 DVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCV 121
             DVI          LA  LAKDGRRVHVIERDL EP+RI+GE +QPGG L L +LGLEDC+
Sbjct:    47 DVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERIMGEFMQPGGRLMLSKLGLEDCL 106

Query:   122 EQIDAQRVFGYALFKDGNRTQISYPLEK--FHSDVAGRGFHNGRFVQRLREKAASLPNVR 179
             E IDAQ+  G  ++KDG     S+P++   F  D + R FHNGRFVQRLR+KA+SLPNVR
Sbjct:   107 EGIDAQKATGMTVYKDGKEAVASFPVDNNNFPFDPSARSFHNGRFVQRLRQKASSLPNVR 166

Query:   180 LEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSC 239
             LE+GTV SL+EEKG IKGV YK  AGEE TA APLT+VCDGC+SNLRRSL +   +V S 
Sbjct:   167 LEEGTVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLNDNNAEVLSY 226

Query:   240 FVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMANYL 299
              VG + +NC L       ++++ PS  + Y ISS +VRC+ ++    +PSISNGEMA ++
Sbjct:   227 QVGFISKNCQLEEPEKLKLIMSKPSFTMLYQISSTDVRCVFEVLPNNIPSISNGEMATFV 286

Query:   300 KTVVAPQIPREIFHSFVAAVDGG-NIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGG 358
             K  +APQ+P ++   F+  +D G +IK MP + M A      G +L+GDAFNMRHP    
Sbjct:   287 KNTIAPQVPLKLRKIFLKGIDEGEHIKAMPTKKMTATLSEKKGVILLGDAFNMRHPAIAS 346

Query:   359 GMTVALSDIVIXXXXXXXXXXXXDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSAS 418
             GM V LSDI+I            +A  +   ++SFY +RKP+++T+NTL  A  QV  AS
Sbjct:   347 GMMVLLSDILILRRLLQPLSNLGNAQKISQVIKSFYDIRKPMSATVNTLGNAFSQVLVAS 406

Query:   419 PDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPFP 478
              DEA++ MRQ C+DYLS GG  +SG ++LL G+NPRP+ L++H  A+ +  +G +L PFP
Sbjct:   407 TDEAKEAMRQGCYDYLSSGGFRTSGMMALLGGMNPRPISLIYHLCAITLSSIGHLLSPFP 466

Query:   479 SPYRFWIGARI 489
             SP R W   R+
Sbjct:   467 SPLRIWHSLRL 477

GO:0004506 "squalene monooxygenase activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016126 "sterol biosynthetic process" evidence=RCA;TAS

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

TAIR|locus:2151832 SQE6 "squalene monoxygenase 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1067 (380.7 bits), Expect = 6.3e-108, P = 6.3e-108
 Identities = 208/428 (48%), Positives = 281/428 (65%)

Query:    61 ADVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDC 120
             ADVI          LA  LAKDGRRVHVIERD+ EP+R++GE +QPGG L L +LGL+DC
Sbjct:    46 ADVIIVGAGVGGSALAYALAKDGRRVHVIERDMREPERMMGEFMQPGGRLMLSKLGLQDC 105

Query:   121 VEQIDAQRVFGYALFKDGNRTQISYPLEK--FHSDVAGRGFHNGRFVQRLREKAASLPNV 178
             +E IDAQ+  G A++KDG      +P++   F  + + R FHNGRFVQ+LR KA SL NV
Sbjct:   106 LEDIDAQKATGLAVYKDGKEADAPFPVDNNNFSYEPSARSFHNGRFVQQLRRKAFSLSNV 165

Query:   179 RLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPK-VDVP 237
             RLE+GTV SLLEEKG +KGV YK K GEE TA APLT+VCDGC+SNLRRSL +    ++ 
Sbjct:   166 RLEEGTVKSLLEEKGVVKGVTYKNKEGEETTALAPLTVVCDGCYSNLRRSLNDDNNAEIM 225

Query:   238 SCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMAN 297
             S  VG + +NC L      H++L+ PS  + Y ISS +VRC  ++  +  PSI+NGEM+ 
Sbjct:   226 SYIVGYISKNCRLEEPEKLHLILSKPSFTMVYQISSTDVRCGFEVLPENFPSIANGEMST 285

Query:   298 YLKTVVAPQIPREIFHSFVAAVD-GGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLT 356
             ++K  + PQ+P ++   F+  +D G +IK +P + M +      G +++GDAFNMRHP+ 
Sbjct:   286 FMKNTIVPQVPPKLRKIFLKGIDEGAHIKVVPAKRMTSTLSKKKGVIVLGDAFNMRHPVV 345

Query:   357 GGGMTVALSDIVIXXXXXXXXXXXXDAPALCNYLESFYTLRKPVASTINTLAGALYQVFS 416
               GM V LSDI+I            DA  +   + SFY +RKP+++T+NTL  A  QV  
Sbjct:   346 ASGMMVLLSDILILRRLLQPLSNLGDANKVSEVINSFYDIRKPMSATVNTLGNAFSQVLI 405

Query:   417 ASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLP 476
              S DEA++ MRQ  +DYL  GG  +SG ++LL G+NPRPL LV+H  A+ +  +G++L P
Sbjct:   406 GSTDEAKEAMRQGVYDYLCSGGFRTSGMMALLGGMNPRPLSLVYHLCAITLSSIGQLLSP 465

Query:   477 FPSPYRFW 484
             FPSP R W
Sbjct:   466 FPSPLRIW 473

GO:0004506 "squalene monooxygenase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016126 "sterol biosynthetic process" evidence=RCA;TAS

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

DICTYBASE|DDB_G0293584 sqle "squalene monooxygenase" [Dictyostelium discoideum (taxid:44689)]

 Score = 707 (253.9 bits), Expect = 1.9e-106, Sum P(2) = 1.9e-106
 Identities = 147/275 (53%), Positives = 183/275 (66%)

Query:   212 APLTIVCDGCFSNLRRSLCNPKVDV-PSCFVGLVLENCNLPFENHGHVVLADPSPILFYP 270
             APLT+VCDGCFSNLR+SL      +  S FVGLV++   LPF+ HGHV L DP+PIL Y 
Sbjct:   196 APLTVVCDGCFSNLRKSLVPENQPLLTSTFVGLVIKGVQLPFQCHGHVFLVDPAPILMYR 255

Query:   271 ISSNEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNR 330
             I S+E+R LVDIP +  P   N E+  YL+TV APQ+P  +  SF+ A+    +K MPN 
Sbjct:   256 IGSDEIRVLVDIPFKCPP---NSELKEYLETVTAPQLPESLRESFLYALRNSPLKKMPNS 312

Query:   331 SMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVIXXXXXXXXXXX---XDAPALC 387
              +P  P P PG L++GD++NMRHPLTG GMTV LSD VI               D  ++ 
Sbjct:   313 RLPPNPTPKPGVLMIGDSWNMRHPLTGSGMTVCLSDCVILSKLITQSNPSINFTDRVSME 372

Query:   388 NYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSL 447
               ++ F   RKP+AST+N LAGALY+VFSAS +  RK    AC  YLSLGG FS+GPV+L
Sbjct:   373 RLIQKFTIQRKPLASTLNVLAGALYKVFSASNEHLRK----ACLGYLSLGGEFSAGPVAL 428

Query:   448 LSGLNPRPLILVFHFFAVAIYGVGRILLPFPSPYR 482
             LSGL P+P IL  HFFAVA YGV + +LPFP+P R
Sbjct:   429 LSGLKPKPHILAMHFFAVAFYGVLKNILPFPTPAR 463

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0004506 "squalene monooxygenase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0004497 "monooxygenase activity" evidence=IEA

TAIR|locus:2167423 SQP2 "squalene monooxygenase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1038 (370.5 bits), Expect = 7.5e-105, P = 7.5e-105
 Identities = 208/434 (47%), Positives = 280/434 (64%)

Query:    62 DVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCV 121
             DVI          LA  LAKDGRRVHVIERDL EP R +GEL+Q GG   L +LGLEDC+
Sbjct:    45 DVIIVGAGVAGASLAYALAKDGRRVHVIERDLKEPQRFMGELMQAGGRFMLAQLGLEDCL 104

Query:   122 EQIDAQRVFGYALFKDGNRTQISYPLEK-FHSDVAGRGFHNGRFVQRLREKAASLPNVRL 180
             E IDAQ     A++KDG    + +P +K F  +  GR   NGR VQRLR+KAASL NV+L
Sbjct:   105 EDIDAQEAKSLAIYKDGKHATLPFPDDKSFPHEPVGRLLRNGRLVQRLRQKAASLSNVQL 164

Query:   181 EQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCF 240
             E+GTV SL+EE+G +KGV YK  AGEE+TA+APLT+VCDGC+SNLRRSL +   +V S  
Sbjct:   165 EEGTVKSLIEEEGVVKGVTYKNSAGEEITAFAPLTVVCDGCYSNLRRSLVDNTEEVLSYM 224

Query:   241 VGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMANYLK 300
             VG V +N  L   +  H++ + P   + Y I+S+EVRC+ ++P   +PSISNGEM+ +LK
Sbjct:   225 VGYVTKNSRLEDPHSLHLIFSKPLVCVIYQITSDEVRCVAEVPADSIPSISNGEMSTFLK 284

Query:   301 TVVAPQIPR--EIFHSFVAAVDGG--NIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLT 356
               +APQIP    +   F+  ++ G   IK+   +SM +      G +++GDAFNMRHP+ 
Sbjct:   285 KSMAPQIPETGNLREIFLKGIEEGLPEIKSTATKSMSSRLCDKRGVIVLGDAFNMRHPII 344

Query:   357 GGGMTVALSDIVIXXXXXXXXXXXXDAPALCNYLESFYTLRKPVASTINTLAGALYQVFS 416
               GM VALSDI I            +   + + ++SFY +RKP+++T+NTLA    QV  
Sbjct:   345 ASGMMVALSDICILRNLLKPLPNLSNTKKVSDLVKSFYIIRKPMSATVNTLASIFSQVLV 404

Query:   417 ASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLP 476
             A+ DEAR+ MRQ CF+YL+ G   + G +++L G+NP PL LV H  A+ +  +G +L P
Sbjct:   405 ATTDEAREGMRQGCFNYLARGDFKTRGLMTILGGMNPHPLTLVLHLVAITLTSMGHLLSP 464

Query:   477 FPSPYRFWIGARII 490
             FPSP RFW   RI+
Sbjct:   465 FPSPRRFWHSLRIL 478

GO:0004506 "squalene monooxygenase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016126 "sterol biosynthetic process" evidence=RCA;TAS

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

ZFIN|ZDB-GENE-071004-98 zgc:171801 "zgc:171801" [Danio rerio (taxid:7955)]

 Score = 878 (314.1 bits), Expect = 6.7e-88, P = 6.7e-88
 Identities = 190/424 (44%), Positives = 263/424 (62%)

Query:    52 ALNGEC-PF-DADVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGY 109
             A + +C P  D +VI          +A  LA+DGRRV V+ERD+ EPDRIVGELLQPGG+
Sbjct:    97 ATDSQCSPTEDPEVIIVGAGVLGSAMAAVLARDGRRVTVVERDMKEPDRIVGELLQPGGF 156

Query:   110 LKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDV-AGRGFHNGRFVQRL 168
               L +LGLE  VE +DA  V GY +    +RT++  P  +  + +  GR FH+GRF+  L
Sbjct:   157 RVLKDLGLEGTVEGLDAHVVNGYVIHDMESRTEVEIPYPQQENCIQGGRAFHHGRFIMGL 216

Query:   169 REKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTK-AGEELTAYAPLTIVCDGCFSNLRR 227
             R  A + PNV+  +GTVTSL EE+G + G+QY+ K  G      APLTIV DGCFS  R+
Sbjct:   217 RRAALAEPNVKFVEGTVTSLEEEEGCVTGIQYREKDTGMLKEVRAPLTIVADGCFSKFRK 276

Query:   228 SLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKV 287
             +L + KV V S FVG ++++      +H  +VLADPSP+L Y ISSNE R LVDI G+ +
Sbjct:   277 NLVSGKVRVSSHFVGCIMKDSPQFKAHHAELVLADPSPVLIYQISSNETRVLVDIRGE-M 335

Query:   288 PSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGD 347
             P     ++  Y+   + PQ+P  +   F+ A+    ++TMP   +P AP    G LL+GD
Sbjct:   336 PR----DLMQYMTDKIYPQLPEHLKEPFMLALQNDRLRTMPASFLPPAPVNKQGVLLLGD 391

Query:   348 AFNMRHPLTGGGMTVALSDIVIXXXXXXXXXXXXDAPALCNYLESFYTLRKPVAS-TINT 406
             A+NMRHPLTGGGM+V L+D+ I            D  AL    + F+  RK   S  +N 
Sbjct:   392 AYNMRHPLTGGGMSVVLNDVSIWRDLLKNIPDLYDNTALLQAKKKFHWERKSSHSFVVNV 451

Query:   407 LAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVA 466
             LA ALY++F+A+ D++  ++R+ACF Y  LGG   +GP+ LLS L+P+PL L+ HFFAVA
Sbjct:   452 LAQALYELFAAT-DKSLHQLRKACFHYFKLGGECINGPIGLLSVLSPKPLTLIGHFFAVA 510

Query:   467 IYGV 470
             +Y +
Sbjct:   511 LYAI 514

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0004506 "squalene monooxygenase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

UNIPROTKB|A5D9A8 SQLE "Squalene monooxygenase" [Bos taurus (taxid:9913)]

 Score = 875 (313.1 bits), Expect = 1.4e-87, P = 1.4e-87
 Identities = 188/413 (45%), Positives = 255/413 (61%)

Query:    60 DADVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLED 119
             D +VI          LA  L++DGR+V VIERDL EPDRI+GE LQPGGY  L +LGLED
Sbjct:   121 DPEVIIVGSGVLGSALAAVLSRDGRKVTVIERDLKEPDRILGEFLQPGGYYVLKDLGLED 180

Query:   120 CVEQIDAQRVFGYALFKDGNRT--QISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPN 177
              VE IDAQ V GY +    ++T  QI +PL + +   +GR FH+GRF+ RLR+ A + PN
Sbjct:   181 TVEGIDAQVVNGYIIHDQESKTEVQIPFPLSENNHVQSGRAFHHGRFIMRLRKAAMAEPN 240

Query:   178 VRLEQGTVTSLLEEKGTIKGVQYKTK-AGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDV 236
              +  +GTV  LLEE   + GVQYK K  G+    +APLT+V DG FS  R++L + KV +
Sbjct:   241 AKFIEGTVLQLLEEDDAVMGVQYKDKETGDIKELHAPLTVVADGLFSKFRKNLISNKVSI 300

Query:   237 PSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMA 296
              S FVG ++EN      NH  ++LA+PSP+L Y IS NE R LVD+ G  +P      + 
Sbjct:   301 SSHFVGFLMENAPQFKANHAELILANPSPVLIYQISPNETRVLVDVRGD-MPR----NLR 355

Query:   297 NYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLT 356
              Y+   + PQ+P  +   F+ A     +++MP   +P++P    G LL+GDA+NMRHPLT
Sbjct:   356 EYMTENIYPQLPDHLKGPFLEASQNSRLRSMPASFLPSSPVNKRGVLLLGDAYNMRHPLT 415

Query:   357 GGGMTVALSDIVIXXXXXXXXXXXXDAPALCNYLESFYTLRKPVAS-TINTLAGALYQVF 415
             GGGMTV  +DI +            D  A+    +SFY  RK   S  +N LA ALY++F
Sbjct:   416 GGGMTVVFNDIKLWRKLLKGIPDLYDDAAVFQAKKSFYWARKKSHSFVVNVLAQALYELF 475

Query:   416 SASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIY 468
             SA+ D++  ++R+ACF Y  LGG   +GPV LLS L+P PL+L+ HFF VA+Y
Sbjct:   476 SAT-DDSLHQLRKACFFYFKLGGKCVAGPVGLLSVLSPNPLVLIGHFFGVAVY 527

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004506 "squalene monooxygenase activity" evidence=IEA

UNIPROTKB|E7EVQ6 SQLE "Squalene monooxygenase" [Homo sapiens (taxid:9606)]

 Score = 875 (313.1 bits), Expect = 1.4e-87, P = 1.4e-87
 Identities = 192/415 (46%), Positives = 256/415 (61%)

Query:    60 DADVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLED 119
             D +VI          LA  L++DGR+V VIERDL EPDRIVGE LQPGGY  L +LGL D
Sbjct:    28 DPEVIIVGAGVLGSALAAVLSRDGRKVTVIERDLKEPDRIVGEFLQPGGYHVLKDLGLGD 87

Query:   120 CVEQIDAQRVFGYALFKDGNRT--QISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPN 177
              VE +DAQ V GY +    +++  QI YPL + +   +GR FH+GRF+  LR+ A + PN
Sbjct:    88 TVEGLDAQVVNGYMIHDQESKSEVQIPYPLSENNQVQSGRAFHHGRFIMSLRKAAMAEPN 147

Query:   178 VRLEQGTVTSLLEEKGTIKGVQYKTK-AGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDV 236
              +  +G V  LLEE   + GVQYK K  G+    +APLT+V DG FS  R+SL + KV V
Sbjct:   148 AKFIEGVVLQLLEEDDVVMGVQYKDKETGDIKELHAPLTVVADGLFSKFRKSLVSNKVSV 207

Query:   237 PSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMA 296
              S FVG +++N      NH  ++LA+PSP+L Y ISS+E R LVDI G+ +P      + 
Sbjct:   208 SSHFVGFLMKNAPQFKANHAELILANPSPVLIYQISSSETRVLVDIRGE-MPR----NLR 262

Query:   297 NYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLT 356
              Y+   + PQIP  +   F+ A D  ++++MP   +P +     G LL+GDA+NMRHPLT
Sbjct:   263 EYMVEKIYPQIPDHLKEPFLEATDNSHLRSMPASFLPPSSVKKRGVLLLGDAYNMRHPLT 322

Query:   357 GGGMTVALSDIVIXXXXXXXXXXXXDAPALCNYLESFYTLRKPVAS-TINTLAGALYQVF 415
             GGGMTVA  DI +            D  A+    +SFY  RK   S  +N LA ALY++F
Sbjct:   323 GGGMTVAFKDIKLWRKLLKGIPDLYDDAAIFEAKKSFYWARKTSHSFVVNILAQALYELF 382

Query:   416 SASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGV 470
             SA+ D++  ++R+ACF Y  LGG   +GPV LLS L+P PL+L+ HFFAVAIY V
Sbjct:   383 SAT-DDSLHQLRKACFLYFKLGGECVAGPVGLLSVLSPNPLVLIGHFFAVAIYAV 436

GO:0004506 "squalene monooxygenase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P32476	ERG1_YEAST	1, ., 1, 4, ., 1, 3, ., 1, 3, 2	0.3738	0.8142	0.8306	yes	no
O13306	ERG1_CANGA	1, ., 1, 4, ., 1, 3, ., 1, 3, 2	0.3680	0.8122	0.8404	yes	no
O65727	ERG11_BRANA	1, ., 1, 4, ., 1, 3, ., 1, 3, 2	0.5275	0.8913	0.8913	N/A	no
O65726	ERG12_BRANA	1, ., 1, 4, ., 1, 3, ., 1, 3, 2	0.5080	0.8557	0.8359	N/A	no
Q9C1W3	ERG1_SCHPO	1, ., 1, 4, ., 1, 3, ., 1, 3, 2	0.4009	0.8023	0.8884	yes	no
O48651	ERG1_PANGI	1, ., 1, 4, ., 1, 3, ., 1, 3, 2	0.8116	0.8498	0.7977	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.14.99	0.976
4th Layer	1.14.99.7	0.991
3rd Layer	1.4.3	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	506
PLN02985	514	PLN02985, PLN02985, squalene monooxygenase	0.0
pfam08491	276	pfam08491, SE, Squalene epoxidase	1e-161
PTZ00367	567	PTZ00367, PTZ00367, squalene epoxidase; Provisiona	1e-142
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	3e-45
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	2e-20
PRK07045	388	PRK07045, PRK07045, putative monooxygenase; Review	1e-18
PRK06185	407	PRK06185, PRK06185, hypothetical protein; Provisio	6e-15
TIGR02032	295	TIGR02032, GG-red-SF, geranylgeranyl reductase fam	2e-11
pfam01494	349	pfam01494, FAD_binding_3, FAD binding domain	3e-11
COG0029	518	COG0029, NadB, Aspartate oxidase [Coenzyme metabol	7e-08
TIGR01988	387	TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hyd	1e-07
PRK05714	405	PRK05714, PRK05714, 2-octaprenyl-3-methyl-6-methox	3e-07
PRK06183	500	PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydr	5e-07
COG2303	542	COG2303, BetA, Choline dehydrogenase and related f	3e-06
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	3e-06
PRK12834	549	PRK12834, PRK12834, putative FAD-binding dehydroge	2e-05
PRK09126	392	PRK09126, PRK09126, hypothetical protein; Provisio	3e-05
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	4e-05
COG1233	487	COG1233, COG1233, Phytoene dehydrogenase and relat	4e-05
PRK08773	392	PRK08773, PRK08773, 2-octaprenyl-3-methyl-6-methox	5e-05
PRK01747	662	PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-	7e-05
TIGR01790	388	TIGR01790, carotene-cycl, lycopene cyclase family	9e-05
pfam01134	391	pfam01134, GIDA, Glucose inhibited division protei	1e-04
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	2e-04
TIGR00551	488	TIGR00551, nadB, L-aspartate oxidase	2e-04
pfam00070	82	pfam00070, Pyr_redox, Pyridine nucleotide-disulphi	2e-04
PRK07494	388	PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl h	2e-04
PRK04176	257	PRK04176, PRK04176, ribulose-1,5-biphosphate synth	3e-04
TIGR00031	377	TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mu	3e-04
PRK06370	463	PRK06370, PRK06370, mercuric reductase; Validated	3e-04
PRK08020	391	PRK08020, ubiF, 2-octaprenyl-3-methyl-6-methoxy-1,	3e-04
PRK06126	545	PRK06126, PRK06126, hypothetical protein; Provisio	4e-04
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	4e-04
TIGR02023	388	TIGR02023, BchP-ChlP, geranylgeranyl reductase	5e-04
COG0562	374	COG0562, Glf, UDP-galactopyranose mutase [Cell env	7e-04
pfam00890	401	pfam00890, FAD_binding_2, FAD binding domain	7e-04
COG1635	262	COG1635, THI4, Ribulose 1,5-bisphosphate synthetas	7e-04
PRK07233	434	PRK07233, PRK07233, hypothetical protein; Provisio	0.001
TIGR03364	365	TIGR03364, HpnW_proposed, FAD dependent oxidoreduc	0.001
TIGR01984	382	TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hy	0.001
PRK05249	461	PRK05249, PRK05249, soluble pyridine nucleotide tr	0.001
TIGR02734	502	TIGR02734, crtI_fam, phytoene desaturase	0.001
PRK06847	375	PRK06847, PRK06847, hypothetical protein; Provisio	0.002
PRK10015	429	PRK10015, PRK10015, oxidoreductase; Provisional	0.003
COG0579	429	COG0579, COG0579, Predicted dehydrogenase [General	0.003
TIGR00292	254	TIGR00292, TIGR00292, thiazole biosynthesis enzyme	0.004
pfam01946	229	pfam01946, Thi4, Thi4 family	0.004
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	0.004
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	0.004
PRK06134	581	PRK06134, PRK06134, putative FAD-binding dehydroge	0.004

>gnl|CDD|178566 PLN02985, PLN02985, squalene monooxygenase

 Score =  533 bits (1375), Expect = 0.0
 Identities = 228/432 (52%), Positives = 305/432 (70%), Gaps = 3/432 (0%)

Query: 61  ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDC 120
            DVI+VGAGV G+ALA  LAKDGRRVHVIERDL EP+R++GE +QPGG   L +LGLEDC
Sbjct: 44  TDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDC 103

Query: 121 VEQIDAQRVFGYALFKDGNRTQISYPLE--KFHSDVAGRGFHNGRFVQRLREKAASLPNV 178
           +E IDAQ+  G A++KDG      +P++   F  + + R FHNGRFVQRLR+KA+SLPNV
Sbjct: 104 LEGIDAQKATGMAVYKDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNV 163

Query: 179 RLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPS 238
           RLE+GTV SL+EEKG IKGV YK  AGEE TA APLT+VCDGC+SNLRRSL +   +V S
Sbjct: 164 RLEEGTVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLNDNNAEVLS 223

Query: 239 CFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMANY 298
             VG + +NC L      H++++ PS  + Y ISS +VRC+ ++    +PSI+NGEM+ +
Sbjct: 224 YQVGYISKNCRLEEPEKLHLIMSKPSFTMLYQISSTDVRCVFEVLPDNIPSIANGEMSTF 283

Query: 299 LKTVVAPQIPREIFHSFVAAVD-GGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTG 357
           +K  +APQ+P ++   F+  +D G +IK +P + M A      G +++GDAFNMRHP   
Sbjct: 284 VKNTIAPQVPPKLRKIFLKGIDEGAHIKVVPTKRMSATLSDKKGVIVLGDAFNMRHPAIA 343

Query: 358 GGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSA 417
            GM V LSDI+ILR LL+ LSNL +A  +   ++SFY +RKP+++T+NTL  A  QV  A
Sbjct: 344 SGMMVLLSDILILRRLLQPLSNLGNANKVSEVIKSFYDIRKPMSATVNTLGNAFSQVLVA 403

Query: 418 SPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPF 477
           S DEA++ MRQ C+DYL  GG  +SG ++LL G+NPRPL L++H  A+ +  +G +L PF
Sbjct: 404 STDEAKEAMRQGCYDYLCSGGFRTSGMMALLGGMNPRPLSLIYHLCAITLSSIGHLLSPF 463

Query: 478 PSPYRFWIGARI 489
           PSP R W   R+
Sbjct: 464 PSPLRIWHSLRL 475

Length = 514

>gnl|CDD|219864 pfam08491, SE, Squalene epoxidase

 Score =  458 bits (1181), Expect = e-161
 Identities = 161/277 (58%), Positives = 202/277 (72%), Gaps = 4/277 (1%)

Query: 211 YAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLADPSPILFYP 270
           +APLTIVCDGCFS  R+SL + KV+V S FVGL+L+N +LP  NHGHV+L  PSPIL Y 
Sbjct: 1   FAPLTIVCDGCFSKFRKSLSDNKVEVGSYFVGLILKNADLPAPNHGHVILGKPSPILLYQ 60

Query: 271 ISSNEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNR 330
           ISS E R L D PG K+PSI+NGE+  YLKT VAPQ+P+E+  SF+AA+D G I++MPN 
Sbjct: 61  ISSTETRILCDYPGPKLPSIANGELKEYLKTSVAPQVPKELRPSFLAALDEGKIRSMPNS 120

Query: 331 SMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYL 390
            +PA+     G +L+GDA NMRHPLTGGGMTVAL+DIV+LR LL  L +L+D   +   L
Sbjct: 121 FLPASKNRKKGLILLGDALNMRHPLTGGGMTVALNDIVLLRKLLGPLRDLSDREKVSKVL 180

Query: 391 ESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSG 450
           +SF+ LRKP  + INTL+ ALY +F+A  DE  K +R+ CFDY SLGG   SGPV+LLSG
Sbjct: 181 KSFHWLRKPYDAVINTLSIALYSLFAADSDEL-KALRKGCFDYFSLGGDCVSGPVALLSG 239

Query: 451 LNPRPLILVFHFFAVAIYGVGRILLPFP---SPYRFW 484
           L PRPL+L  HFFAVA+Y + +  +PFP   SP    
Sbjct: 240 LLPRPLLLFGHFFAVALYSIYQNFIPFPILGSPLALL 276

This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway. Putative transmembrane regions are found to the protein's C-terminus. Length = 276

>gnl|CDD|240384 PTZ00367, PTZ00367, squalene epoxidase; Provisional

 Score =  421 bits (1084), Expect = e-142
 Identities = 183/459 (39%), Positives = 243/459 (52%), Gaps = 55/459 (11%)

Query: 59  FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDL-SEPDRIVGELLQPGGYLKLIELGL 117
           +D DVI+VG  +AG  LA  L+K GR+V ++ERDL S+PDRIVGELLQPGG   L ELG+
Sbjct: 32  YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKELGM 91

Query: 118 EDCVEQIDAQRVFGYALFK-DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKA--AS 174
           E+C E I     FGY +F   G + ++ Y      +  +G  FH G FVQ LR       
Sbjct: 92  EECAEGIGMP-CFGYVVFDHKGKQVKLPY-----GAGASGVSFHFGDFVQNLRSHVFHNC 145

Query: 175 LPNVRLEQGTVTSLLEEKG----TIKGVQYKTKAGEEL---------------------T 209
             NV + +GTV SLLEE         GV+Y      ++                      
Sbjct: 146 QDNVTMLEGTVNSLLEEGPGFSERAYGVEYTEAEKYDVPENPFREDPPSANPSATTVRKV 205

Query: 210 AYAPLTIVCDGCFSNLRRSL--CNPKVDVPSCFVGLVLENCNLPFENHGHVVLADPSPIL 267
           A APL ++CDG  S  +       P  +  S FVGLVL+N  LP E HG V L    PIL
Sbjct: 206 ATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFVGLVLKNVRLPKEQHGTVFLGKTGPIL 265

Query: 268 FYPISSNEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFV-AAVDGGNIKT 326
            Y +  NE+R LVD     +PS+   E + +L   VAP +P  +  SF+ A+ D   I++
Sbjct: 266 SYRLDDNELRVLVDYNKPTLPSLE--EQSEWLIEDVAPHLPENMRESFIRASKDTKRIRS 323

Query: 327 MPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHL-----SNLN 381
           MPN   P A     G + +GD  N RHPLTGGGMT   SD + L   L  +      + N
Sbjct: 324 MPNARYPPAFPSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSIDQN 383

Query: 382 DAPA----LCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLG 437
           +       +   + S+   RK  ASTIN L+ ALY VFS+        +R AC DY SLG
Sbjct: 384 EMAEIEDAIQAAILSYARNRKTHASTINILSWALYSVFSSPA------LRDACLDYFSLG 437

Query: 438 GIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLP 476
           G   +GP+SLLSGL+P P  L+FH+F+VA+YGV  +++ 
Sbjct: 438 GECVTGPMSLLSGLDPSPGGLLFHYFSVALYGVLNLIME 476

Length = 567

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score =  162 bits (412), Expect = 3e-45
 Identities = 94/382 (24%), Positives = 135/382 (35%), Gaps = 16/382 (4%)

Query: 62  DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIV-GELLQPGGYLKLIELGLEDC 120
           DV +VGAG AG ALA  LA+ G  V ++ER   E      G  L P     L  LGL D 
Sbjct: 4   DVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDR 63

Query: 121 VEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRL 180
           +E +         +  DG R  + +   +      G        +  L E A +LPNV L
Sbjct: 64  LEALGVP-PLHVMVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTL 122

Query: 181 EQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSC 239
             G  V ++ ++   +      +  GE L   A L +  DG  S +RR+    +      
Sbjct: 123 RFGAEVEAVEQDGDGVTVT--LSFDGETLD--ADLLVGADGANSAVRRAAGIAEFSGRDY 178

Query: 240 -FVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMAN 297
               LV       P E           P    P+  N    +  +P      +       
Sbjct: 179 GQTALVANVEPEEPHEGRAGERFTHAGPFALLPLPDNRSSVVWSLPPGPAEDLQGLSDE- 237

Query: 298 YLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTG 357
                +  ++        V  V   +    P     A  Y     +L+GDA +  HPL G
Sbjct: 238 EFLRELQRRLGERDPLGRVTLVSSRSA--FPLSLRVAERYRRGRVVLIGDAAHAMHPLAG 295

Query: 358 GGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSA 417
            G  +AL D   L   L          A    L ++   R+P A  I  L+ AL ++FSA
Sbjct: 296 QGANLALEDAAALAEALAAAPRPGADAAA---LAAYEARRRPRAEAIQKLSRALGRLFSA 352

Query: 418 SPDEARKEMRQACFDYLSLGGI 439
               AR  +R      L     
Sbjct: 353 DGPFARF-LRNLGLRLLDRLPP 373

Length = 387

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 92.9 bits (231), Expect = 2e-20
 Identities = 76/316 (24%), Positives = 120/316 (37%), Gaps = 34/316 (10%)

Query: 59  FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP-DRIV-GELLQPGGYLKLIELG 116
            + DV++VGAG AG++ A  LAK G  V V+E+  SEP  +   G  L P    +LI   
Sbjct: 2   MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEK-GSEPGAKPCCGGGLSPRALEELIPDF 60

Query: 117 LEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLP 176
            E+   ++   R     ++  G +  I  P+ +      G      +F + L E+A    
Sbjct: 61  DEEIERKVTGAR-----IYFPGEKVAIEVPVGE------GYIVDRAKFDKWLAERAEEA- 108

Query: 177 NVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVD 235
              L  GT VT ++ E   +          +E+   A + I  DG  S L R L   K  
Sbjct: 109 GAELYPGTRVTGVIREDDGVVVG--VRAGDDEVR--AKVVIDADGVNSALARKL-GLKDR 163

Query: 236 VPSCFVGLVLENCNLPFENHGHVVLADPSPI------LFYPISSNEVRC-LVDIPGQKVP 288
            P  +   V E   +P +      L  P  +        +P+        +  +      
Sbjct: 164 KPEDYAIGVKEVIEVPDDGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVLLDDPSL 223

Query: 289 SISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDA 348
           S     +  + +    P I + +    +     G I      S P       G LL+GDA
Sbjct: 224 SPFLELLERFKE---HPAIRKLLLGGKILEYAAGGIPEGGPASRPLV---GDGVLLVGDA 277

Query: 349 FNMRHPLTGGGMTVAL 364
               +PLTG G+  A+
Sbjct: 278 AGFVNPLTGEGIRYAI 293

Length = 396

>gnl|CDD|136171 PRK07045, PRK07045, putative monooxygenase; Reviewed

 Score = 87.3 bits (216), Expect = 1e-18
 Identities = 101/373 (27%), Positives = 149/373 (39%), Gaps = 48/373 (12%)

Query: 62  DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCV 121
           DV++ G+G+AG ALA+ L   G  V V+ER      +   +LL+P G   +  +GL D V
Sbjct: 7   DVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDV 66

Query: 122 EQIDAQRVFGYALFKDGNRTQISYPLEKF-HSDVAGRGFHNGRFVQRLR----EKAASLP 176
                 R     L+ D         +    +   +  G+      ++LR     K   LP
Sbjct: 67  FAAGGLRRDAMRLYHDKE------LIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLP 120

Query: 177 NVRLEQGTVTSLLE--EKGTIKGVQYKTKAGEELTAYAPLTIV-CDGCFSNLRRSLCNPK 233
           NVRL   T    +E    GT+  V      GE +   AP  +V  DG  S +R  +    
Sbjct: 121 NVRLRFETSIERIERDADGTVTSVTLSD--GERV---APTVLVGADGARSMIRDDVLRMP 175

Query: 234 VD-----VPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVP 288
            +      P  F  + L +     E +   V ++     FYPI     R +V  P     
Sbjct: 176 AERVPYATPMAFGTIALTDSVR--ECNRLYVDSNQGLAYFYPIGDQATRLVVSFPAD--- 230

Query: 289 SISNGEMANYLKTVVAPQIPREIFHSFV--------AAVDGGN-IKTMPNRSMPAAPYPT 339
                EM  YL      ++   + + FV        AA+  G     +P   M    Y  
Sbjct: 231 -----EMQGYLADTTRTKLLARL-NEFVGDESADAMAAIGAGTAFPLIPLGRMNLDRYHK 284

Query: 340 PGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLL-RHLSNLNDAPALCNYLESFYTLRK 398
              +L+GDA +  HP+TG GM +A+ D   L   L  HLS      AL + LE F  +R+
Sbjct: 285 RNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLS---GQIALADALERFERIRR 341

Query: 399 PVASTINTLAGAL 411
           PV   + +   AL
Sbjct: 342 PVNEAVISYGHAL 354

Length = 388

>gnl|CDD|235729 PRK06185, PRK06185, hypothetical protein; Provisional

 Score = 76.1 bits (188), Expect = 6e-15
 Identities = 53/184 (28%), Positives = 78/184 (42%), Gaps = 30/184 (16%)

Query: 60  DADVIVVGAGVAGAALANTLAKDGRRVHVIE------RDLSEPDRIVGELLQPGGYLKLI 113
             D  +VG G AG  L   LA+ G  V V+E      RD     R  G+ + P   L+L+
Sbjct: 6   TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDF----R--GDTVHPST-LELM 58

Query: 114 -ELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHN-------GRFV 165
            ELGL +   ++  Q+V     F+ G RT       +  +       +          F+
Sbjct: 59  DELGLLERFLELPHQKV-RTLRFEIGGRTVTLADFSRLPTP------YPYIAMMPQWDFL 111

Query: 166 QRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN 224
             L E+A++ PN  L  G  VT L+EE G + GV+ +T         A L +  DG  S 
Sbjct: 112 DFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRART-PDGPGEIRADLVVGADGRHSR 170

Query: 225 LRRS 228
           +R  
Sbjct: 171 VRAL 174

Length = 407

>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 70/319 (21%), Positives = 110/319 (34%), Gaps = 51/319 (15%)

Query: 62  DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCV 121
           DV+VVGAG AGA+ A  LA  G RV ++E+      +  G  L     L+ ++L  E  V
Sbjct: 2   DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGAL-SPRALEELDLPGELIV 60

Query: 122 EQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLE 181
             +   R F      +G+  +I    E  +  V  R       +    ++A +   +RL 
Sbjct: 61  NLVRGARFF----SPNGDSVEIPIETELAY--VIDRD-AFDEQLAERAQEAGA--ELRLG 111

Query: 182 QGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFV 241
              V  +      +  V      G E T  A + I  DG  S + + L   K        
Sbjct: 112 T-RVLDVEIHDDRV-VVIV---RGSEGTVTAKIVIGADGSRSIVAKKLGLKKEPREYGV- 165

Query: 242 GLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPS-----ISNGE-M 295
                                  P        +E    V I    VP         G+  
Sbjct: 166 ---------------AARAEVEMPDEEV----DEDFVEVYIDRGIVPGGYGWVFPKGDGT 206

Query: 296 ANY---LKTVVAPQIPREIFHSFVAA-VDGGNIKTMPNRS------MPAAPYPTPGALLM 345
           AN     ++    + P++    F+A   +  + +T+           P         LL+
Sbjct: 207 ANVGVGSRSAEEGEDPKKYLKDFLARRPELKDAETVEVCGALIPIGRPDEKLVRGNVLLV 266

Query: 346 GDAFNMRHPLTGGGMTVAL 364
           GDA    +PLTG G+  A+
Sbjct: 267 GDAAGHVNPLTGEGIYYAM 285

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 295

>gnl|CDD|216530 pfam01494, FAD_binding_3, FAD binding domain

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 89/362 (24%), Positives = 128/362 (35%), Gaps = 40/362 (11%)

Query: 60  DADVIVVGAGVAGAALANTLAKDGRRVHVIER--DLSEPDRIVG------ELLQPGGYLK 111
           + DV++VG G AG  LA  LA+ G RV ++ER    S   R  G      ELL+      
Sbjct: 1   ETDVLIVGGGPAGLMLALLLARAGVRVVLVERHATTSVLPRAGGLNQRTMELLR------ 54

Query: 112 LIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREK 171
             + GLED +    A        F + +R +           V             LRE 
Sbjct: 55  --QAGLEDRILAEGAPHEGMGLAFYNTSRRRADLDFLTSPPRVTVYPQT--ELEPILREH 110

Query: 172 AASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLC 230
           A +    ++  GT V SL ++   +  V    + GEE T  A   + CDG  S +R+ L 
Sbjct: 111 AEARG-AQVRFGTEVLSLEQDGDGVTAVVRDRRDGEEYTVRAKYLVGCDGGRSPVRKQLG 169

Query: 231 NP---KVDVPSCFVGLVLENCNLPFENHGHVV----LADPSPILFY-PISSN--EVRCLV 280
                   VP   + ++ +  +L        V     A  S      P  S       + 
Sbjct: 170 IEFEGFEGVPFGSLDVLFDAPDLSDPVERAFVHYLIGAPHSRGFMVGPWRSAGRSRYYVQ 229

Query: 281 DIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTP 340
                +V            K     Q  R      +A V+         RS  A  Y   
Sbjct: 230 VPWDPEVEERPEEFTDEEAK-----QRLRSAVGIDLADVEILWKSIWGVRSRVATRYRKG 284

Query: 341 GALLMGDAFNMRHPLTGG-GMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKP 399
              L GDA +  HP TGG G+   + D   L   L  +       AL   L+++   R+P
Sbjct: 285 RVFLAGDAAH-IHPPTGGQGLNTGIQDAFNLAWKLAAVLRGTAGEAL---LDTYEAERRP 340

Query: 400 VA 401
           VA
Sbjct: 341 VA 342

This domain is involved in FAD binding in a number of enzymes. Length = 349

>gnl|CDD|223108 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism]

 Score = 54.6 bits (132), Expect = 7e-08
 Identities = 51/203 (25%), Positives = 77/203 (37%), Gaps = 34/203 (16%)

Query: 62  DVIVVGAGVAGAALANTLAKDGRRVHVIERD-----------------LSEPDRI---VG 101
           DV+++G+G+AG   A +LA    RV V+ +                  LSE D     V 
Sbjct: 9   DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVA 67

Query: 102 ELLQPGGYL---KLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRG 158
           + L  G  L   + +E  + +  E I+     G   F      ++    E  HS    R 
Sbjct: 68  DTLAAGAGLCDEEAVEFIVSEAPEAIEWLIDLG-VPFDRDEDGRLHLTREGGHS--RRRI 124

Query: 159 FH----NGRFVQR-LREKAASLPNVR-LEQGTVTSLLEEKGT-IKGVQYKTKAGEELTAY 211
            H     G+ +   L +K  + PN+  LE      L+ E G  + GV    + GE  T  
Sbjct: 125 LHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFR 184

Query: 212 APLTIVCDGCFSNLRRSLCNPKV 234
           A   ++  G    L     NPK 
Sbjct: 185 AKAVVLATGGLGGLYAYTTNPKG 207

Length = 518

>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 82/347 (23%), Positives = 128/347 (36%), Gaps = 35/347 (10%)

Query: 62  DVIVVGAGVAGAALANTLAKDGR-RVHVIERDLSE------PD-RIVGELLQPGGYLKLI 113
           D+++VG G  G ALA  LA+ G  +V +IE            D R+    L       L 
Sbjct: 1   DIVIVGGGPVGLALALALARSGGLKVALIEATPLPAPADPGFDNRVSA--LSAASIRLLE 58

Query: 114 ELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAA 173
           +LG+ D +E   AQ +    +   G+   + +  ++   +  G    N    Q L E+  
Sbjct: 59  KLGVWDKIEPARAQPIRDIHVSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQ 118

Query: 174 SLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPK 233
            LPN R+       ++E       V+     G++L   A L +  DG  S +R+    P 
Sbjct: 119 ELPN-RVTILCPARVVELPRHSDHVELTLDDGQQLR--ARLLVGADGANSKVRQLAGIPT 175

Query: 234 VDVP---SCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSI 290
                  S  V  V      P +           P+   P+  N  R  +      V ++
Sbjct: 176 TGWDYGQSAVVANV--KHERPHQGTAWERFTPTGPLALLPLPDN--RSSL------VWTL 225

Query: 291 SNGEMANYLKTVVAPQIPREI---FHSFVAA-VDGGNIKTMPNRSMPAAPYPTPGALLMG 346
              E A  L  +   +   E+   F S + A    G     P     A  Y  P   L+G
Sbjct: 226 PP-EEAERLLALSDEEFLAELQRAFGSRLGAITLVGERHAFPLSLTHAKRYVAPRLALIG 284

Query: 347 DAFNMRHPLTGGGMTVALSDIVILRNLL----RHLSNLNDAPALCNY 389
           DA +  HPL G G+ + L D+  L  +L    R   ++     L  Y
Sbjct: 285 DAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRGEDIGSPRVLQRY 331

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4,) and UbiF (which acts at position 5,). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6,) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 387

>gnl|CDD|168201 PRK05714, PRK05714, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

 Score = 52.5 bits (126), Expect = 3e-07
 Identities = 93/358 (25%), Positives = 132/358 (36%), Gaps = 35/358 (9%)

Query: 61  ADVIVVGAGVAGAALANTLAKDGRRVHVIER--------DLSEPDRIVGELLQPGGYLKL 112
           AD+++VGAG+ G+ALA  L   G  V +++         D   P       L       L
Sbjct: 3   ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRIL 62

Query: 113 IELGLEDCVEQIDAQRVFGYALFK--DGNRT-QISYPLEKFHSDVAGRGFHNGRFVQ--- 166
             LG  D    I A+R   Y+  +  DG+ T QI +     H++V G    N R VQ   
Sbjct: 63  ERLGAWD---GIAARRASPYSEMQVWDGSGTGQIHFSAASVHAEVLGHIVEN-RVVQDAL 118

Query: 167 --RLREKAASL-PNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFS 223
             RL +    L  N RLEQ      +   G           G +L A  PL +  DG  S
Sbjct: 119 LERLHDSDIGLLANARLEQ------MRRSG--DDWLLTLADGRQLRA--PLVVAADGANS 168

Query: 224 NLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDI 282
            +RR       +       +V    C+ P          D  P+ F P+  +       I
Sbjct: 169 AVRRLAGCATREWDYLHHAIVTSVRCSEPHRATAWQRFTDDGPLAFLPLERDGDEHWCSI 228

Query: 283 PGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKT-MPNRSMPAAPYPTPG 341
                P  +   MA  L            F   +  V   + +  +P R   A  Y  PG
Sbjct: 229 VWSTTPEEAERLMA--LDDDAFCAALERAFEGRLGEVLSADPRLCVPLRQRHAKRYVEPG 286

Query: 342 ALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKP 399
             L+GDA +  HPL G G+ +   D  +L  +L H +   +  A    L  F   R P
Sbjct: 287 LALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRMP 344

Length = 405

>gnl|CDD|235727 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

 Score = 51.8 bits (125), Expect = 5e-07
 Identities = 56/197 (28%), Positives = 81/197 (41%), Gaps = 39/197 (19%)

Query: 59  FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS---EPDRIVG------ELLQPGGY 109
            D DV++VGAG  G  LAN L + G RV V+ER  +    P R VG       +LQ    
Sbjct: 9   HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLP-RAVGIDDEALRVLQ---- 63

Query: 110 LKLIELGLEDCVEQIDAQRVFGYAL-FKDGNR---TQISYPLEKFHSDVAGRGFHNG-RF 164
                +GL    +++       + + F D       +I+ P           G+     F
Sbjct: 64  ----AIGL---ADEVLPHTTPNHGMRFLDAKGRCLAEIARP------STGEFGWPRRNAF 110

Query: 165 VQ-----RLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC 218
            Q      LR   A  P+VR+  G  VT+L ++   +  V      G+  T  A   + C
Sbjct: 111 HQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVT-VTLTDADGQRETVRARYVVGC 169

Query: 219 DGCFSNLRRSLCNPKVD 235
           DG  S +RR+L  P  D
Sbjct: 170 DGANSFVRRTLGVPFED 186

Length = 500

>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIER 91
          + D ++VG+G AG+ LA  L+  G  V V+E 
Sbjct: 7  EYDYVIVGSGSAGSVLAARLSDAGLSVLVLEA 38

Length = 542

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERD 92
          DV+V+G G+ G + A  LA+ G  V ++ER 
Sbjct: 1  DVVVIGGGIVGLSTAYELARRGLSVTLLERG 31

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed

 Score = 46.8 bits (112), Expect = 2e-05
 Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 3/42 (7%)

Query: 60  DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVG 101
           DADVIVVGAG+AG   A  LA  G+RV ++++   E +  +G
Sbjct: 4   DADVIVVGAGLAGLVAAAELADAGKRVLLLDQ---ENEANLG 42

Length = 549

>gnl|CDD|236385 PRK09126, PRK09126, hypothetical protein; Provisional

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 55/189 (29%), Positives = 77/189 (40%), Gaps = 41/189 (21%)

Query: 62  DVIVVGAGVAGAALANTLAKDGRRVHVIERD----LSEPD---RIVG------ELLQPGG 108
           D++VVGAG AG + A +LA  G +V +IER     L++P    R +       E+LQ  G
Sbjct: 5   DIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLG 64

Query: 109 YLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGF-HNGRFV-- 165
               I    ED +  +   +V       +G      + L     D  GRG    G  V  
Sbjct: 65  AWDRI---PEDEISPLRDAKVL------NGRS---PFAL---TFDARGRGADALGYLVPN 109

Query: 166 QRLR----EKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDG 220
             +R    E  +    + L  GT VT++   +    G Q     G  LT  A L +  D 
Sbjct: 110 HLIRRAAYEAVSQQDGIELLTGTRVTAV---RTDDDGAQVTLANGRRLT--ARLLVAADS 164

Query: 221 CFSNLRRSL 229
            FS  RR L
Sbjct: 165 RFSATRRQL 173

Length = 392

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 41.3 bits (98), Expect = 4e-05
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 65 VVGAGVAGAALANTLAKDGRRVHVIER 91
          +VGAG++G   A  LAK G+ V V+E+
Sbjct: 1  IVGAGLSGLVAAYLLAKRGKDVLVLEK 27

Length = 66

>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 15/30 (50%), Positives = 22/30 (73%)

Query: 62 DVIVVGAGVAGAALANTLAKDGRRVHVIER 91
          DV+V+GAG+ G A A  LA+ G +V V+E+
Sbjct: 5  DVVVIGAGLNGLAAAALLARAGLKVTVLEK 34

Length = 487

>gnl|CDD|181552 PRK08773, PRK08773, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

 Score = 45.2 bits (107), Expect = 5e-05
 Identities = 75/325 (23%), Positives = 119/325 (36%), Gaps = 26/325 (8%)

Query: 62  DVIVVGAGVAGAALANTLAKDGRRVHVIER------DLSEPDRIVGELLQPGGYLKLIEL 115
           D ++VG GV GAA A  LA  G  V ++E          +PD  V         L L  L
Sbjct: 8   DAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAAL-LDRL 66

Query: 116 GLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASL 175
           G+   V    AQ      ++  G   ++ +  +    +  G    N   V RL    A+L
Sbjct: 67  GVWPAVRAARAQPYRRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRL---WAAL 123

Query: 176 PNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRR--SLCNPK 233
               ++      ++  +     V+ +   G  L A   L I  DG  S LR    L   +
Sbjct: 124 HAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEA--ALAIAADGAASTLRELAGLPVSR 181

Query: 234 VDVPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPIS---SNEVRCLVDIPGQKVPSI 290
            D     V   ++    P +           P+   P +   S+ V  L D   ++V ++
Sbjct: 182 HDYAQRGVVAFVDT-EHPHQATAWQRFLPTGPLALLPFADGRSSIVWTLPDAEAERVLAL 240

Query: 291 SNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFN 350
                +  L    A ++      S   A         P R      Y +   L +GDA +
Sbjct: 241 DEAAFSRELTQAFAARLGEVRVASPRTA--------FPLRRQLVQQYVSGRVLTLGDAAH 292

Query: 351 MRHPLTGGGMTVALSDIVILRNLLR 375
           + HPL G G+ + L D+  L+ L+R
Sbjct: 293 VVHPLAGQGVNLGLRDVAALQQLVR 317

Length = 392

>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

 Score = 45.2 bits (108), Expect = 7e-05
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 62  DVIVVGAGVAGAALANTLAKDGRRVHVIERD 92
           D  ++G G+AGAALA  LA+ G +V + E D
Sbjct: 262 DAAIIGGGIAGAALALALARRGWQVTLYEAD 292

Length = 662

>gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 65/337 (19%), Positives = 95/337 (28%), Gaps = 65/337 (19%)

Query: 62  DVIVVGAGVAGAALANTLAKDGRRVHVIE--RDLSEPDR---IVGELLQPGGYLKLIELG 116
           D+ V+G G AG A+A  LA+ G RV +IE    +           +         L +LG
Sbjct: 1   DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDD---------LSDLG 51

Query: 117 LEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLP 176
           L DCVE +       Y         ++                 + R  + L +K     
Sbjct: 52  LADCVEHVWPD---VYEYRFPKQPRKLGTAY---------GSVDSTRLHEELLQKCPE-G 98

Query: 177 NVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDV 236
            V   +        +   +  V      G+ +   A L I   G    ++       V  
Sbjct: 99  GVLWLERKAIHAEADGVALSTVYC--AGGQRIQ--ARLVIDARGFGPLVQYVRFPLNVGF 154

Query: 237 PSCFVGLVLENCNLPFENHGHVV-------LADPS-----PILFY--PISSNEV----RC 278
                G+       P      V+       LA P      P   Y  P+ S  V      
Sbjct: 155 QV-AYGVEARLSRPPHGPSSMVIMDARVDQLAAPELKGYRPTFLYAMPLGSTRVFIEETS 213

Query: 279 LVDIPGQKVPSISNGEMANYLKTV-VAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPY 337
           L D P      +    +   L       +   E     +                P  P 
Sbjct: 214 LADRPALPRDRLR-QRILARLNAQGWQIKTIEEEEWGALPV----------GLPGPFLPQ 262

Query: 338 PTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLL 374
                   G A  M HP TG  +  ALSD   L   +
Sbjct: 263 RVAAF---GAAAGMVHPTTGYSVARALSDAPGLAAAI 296

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. Length = 388

>gnl|CDD|216319 pfam01134, GIDA, Glucose inhibited division protein A

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 52/182 (28%), Positives = 73/182 (40%), Gaps = 48/182 (26%)

Query: 62  DVIVVGAGVAG--AALANTLAKDGRRVHVIERDLSEPDRI-------------VGELLQP 106
           DVIV+G G AG  AALA   A+ G +V +I  +    D I              G L   
Sbjct: 1   DVIVIGGGHAGCEAALA--AARMGAKVLLITHNT---DTIAELSCNPSIGGIAKGHL--- 52

Query: 107 GGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNG---- 162
                         V +IDA    G  + K  ++T I + +       A R         
Sbjct: 53  --------------VREIDA---LGGLMGKAADKTGIQFRMLNTSKGPAVRALRAQVDRD 95

Query: 163 RFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCF 222
            + + + E   + PN+ L QG VT L+ E G +KGV   T+ GEE    A   ++  G F
Sbjct: 96  LYSKEMTETLENHPNLTLIQGEVTDLIPENGKVKGV--VTEDGEEY--KAKAVVLATGTF 151

Query: 223 SN 224
            N
Sbjct: 152 LN 153

Length = 391

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92
           DV+++G G+ G + A  LA+ G  V V+E  
Sbjct: 5  MDVVIIGGGIVGLSAAYYLAERGADVTVLEAG 36

Length = 387

>gnl|CDD|233018 TIGR00551, nadB, L-aspartate oxidase

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 51/202 (25%), Positives = 79/202 (39%), Gaps = 32/202 (15%)

Query: 61  ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE-------------------PDRIVG 101
            DV+V+G+G AG + A  LA  GR + + +  ++E                    D  V 
Sbjct: 3   CDVVVIGSGAAGLSAALALADQGRVIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVE 62

Query: 102 ELLQPGGYL---KLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRG 158
           + L  G  +   + +E  + D    +      G  LF    +   +   E  HS    R 
Sbjct: 63  DTLAAGAGICDREAVEFVVSDARSAVQWLVDQG-VLFDRHEQGSYALTREGGHS--YRRI 119

Query: 159 FH----NGRFVQR-LREKAASLPNVRL-EQGTVTSLLEEKGTIKGVQYKTKAGEELTAYA 212
            H     GR V   L +KA + PN+R+ E      LL E G + GV    +   E T +A
Sbjct: 120 LHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVE-TCHA 178

Query: 213 PLTIVCDGCFSNLRRSLCNPKV 234
              ++  G    L +   NPK+
Sbjct: 179 DAVVLATGGAGKLYQYTTNPKI 200

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides]. Length = 488

>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 7/59 (11%)

Query: 63  VIVVGAGVAGAALANTLAKDGRRVHVIER---DLSEPDRIVGELLQPGGYLKLIELGLE 118
           V+VVG G  G   A+ LAK G +V V+ER    L   D  + ++LQ     KL + G+E
Sbjct: 2   VVVVGGGYIGLEFASALAKLGSKVTVVERRDRLLRGFDEEIAKILQ----EKLEKNGIE 56

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82

>gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 43/176 (24%), Positives = 58/176 (32%), Gaps = 22/176 (12%)

Query: 62  DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGL-EDC 120
           D+ V+G G AG A A  LA+ G  V ++  +    D     LL P     L  LGL    
Sbjct: 9   DIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRF-LERLGLWARL 67

Query: 121 VEQIDAQRVFGYALFKDGNRTQISYPLEKFHS-----DVAGRGFHNGRFVQRLREKAASL 175
                  +        D     I  P  +F +     D  G    N    + L  + A L
Sbjct: 68  APHAAPLQSMRIV---DATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAEL 124

Query: 176 PNV-RLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLC 230
           PN+ R      +    E      V      G  L+  A L +  DG     R S  
Sbjct: 125 PNITRFGDEAESVRPRE----DEVTVTLADGTTLS--ARLVVGADG-----RNSPV 169

Length = 388

>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase; Provisional

 Score = 42.5 bits (101), Expect = 3e-04
 Identities = 18/35 (51%), Positives = 22/35 (62%)

Query: 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94
          + DV +VGAG +G   A  LAK G +V V ER LS
Sbjct: 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLS 59

Length = 257

>gnl|CDD|232791 TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mutase

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 16/30 (53%), Positives = 23/30 (76%)

Query: 62 DVIVVGAGVAGAALANTLAKDGRRVHVIER 91
          D I+VGAG++G  LAN LA+  +RV V+E+
Sbjct: 3  DYIIVGAGLSGIVLANILAQLNKRVLVVEK 32

This enzyme is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate. It contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 377

>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated

 Score = 42.9 bits (102), Expect = 3e-04
 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93
           +DA  IV+GAG AG  LA   A  G +V +IER L
Sbjct: 5  RYDA--IVIGAGQAGPPLAARAAGLGMKVALIERGL 38

Length = 463

>gnl|CDD|181199 PRK08020, ubiF, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 8/46 (17%)

Query: 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL-------SEPD-RI 99
          D+ +VG G+ GAALA  LA+ G  V V+E          S+PD RI
Sbjct: 7  DIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRI 52

Length = 391

>gnl|CDD|235704 PRK06126, PRK06126, hypothetical protein; Provisional

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 45/190 (23%), Positives = 68/190 (35%), Gaps = 18/190 (9%)

Query: 58  PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGL 117
             +  V++VG G  G ALA  L + G    ++ER                       LG+
Sbjct: 5   TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGI 64

Query: 118 EDCVEQ-----------IDAQRVFGYALFKDGNRTQ---ISYPLEKFHSDVAGRGFH--N 161
            D V                 R+ GY L +    +    I+       S  +    H   
Sbjct: 65  ADEVRSAGLPVDYPTDIAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIP 124

Query: 162 GRFVQR-LREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219
            ++++  L E AA+ P V L  G  +T   ++   +         GE LT  A   + CD
Sbjct: 125 QKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCD 184

Query: 220 GCFSNLRRSL 229
           G  S +RRSL
Sbjct: 185 GARSAVRRSL 194

Length = 545

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERD 92
          DV+++G G AG A A  LA+ G +V +IER+
Sbjct: 1  DVVIIGGGPAGLAAAIRLARLGLKVALIERE 31

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|233689 TIGR02023, BchP-ChlP, geranylgeranyl reductase

 Score = 42.1 bits (99), Expect = 5e-04
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94
          DV V+G G +GA  A TLA+ G    ++ER LS
Sbjct: 2  DVAVIGGGPSGATAAETLARAGIETILLERALS 34

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ) [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 388

>gnl|CDD|223636 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 13/30 (43%), Positives = 23/30 (76%)

Query: 62 DVIVVGAGVAGAALANTLAKDGRRVHVIER 91
          D ++VGAG++GA +A   A+ G+RV ++E+
Sbjct: 3  DYLIVGAGLSGAVIAEVAAQLGKRVLIVEK 32

Length = 374

>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 14/30 (46%), Positives = 22/30 (73%)

Query: 62 DVIVVGAGVAGAALANTLAKDGRRVHVIER 91
          DV+V+G+G+AG A A   A+ G +V V+E+
Sbjct: 1  DVVVIGSGLAGLAAALEAAEAGLKVAVVEK 30

This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Length = 401

>gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 5/51 (9%)

Query: 60  DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYL 110
           ++DVI+VGAG +G   A  LAK G +V + ER LS      G  +  GG L
Sbjct: 30  ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLS-----FGGGIWGGGML 75

Length = 262

>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional

 Score = 41.4 bits (98), Expect = 0.001
 Identities = 15/30 (50%), Positives = 18/30 (60%)

Query: 63 VIVVGAGVAGAALANTLAKDGRRVHVIERD 92
          + +VG G+AG A A  LAK G  V V E D
Sbjct: 2  IAIVGGGIAGLAAAYRLAKRGHEVTVFEAD 31

Length = 434

>gnl|CDD|132407 TIGR03364, HpnW_proposed, FAD dependent oxidoreductase TIGR03364

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERD 92
          D+I+VGAG+ G A A   A+ G  V VIER 
Sbjct: 2  DLIIVGAGILGLAHAYAAARRGLSVTVIERS 32

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. Length = 365

>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 78/361 (21%), Positives = 125/361 (34%), Gaps = 66/361 (18%)

Query: 62  DVIVVGAGVAGAALANTLAKDGR-RVHVIE-RDLSEPDRIVGE---LLQPGGYLKLIELG 116
           DVI+VG G+ G +LA  L++ G+ ++ +IE    S            L  G    L +LG
Sbjct: 1   DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLG 60

Query: 117 LEDCVE---------QIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQR 167
           L   +           +  Q  FG         T +     +F     G         Q 
Sbjct: 61  LWPKLAPFATPILDIHVSDQGHFG--------ATHLRA--SEFGLPALGYVVELADLGQA 110

Query: 168 LREKAASLPNVRL----EQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFS 223
           L  + A L N++L        +            V+     G++L   A L I  DG  S
Sbjct: 111 LLSRLALLTNIQLYCPARYKEIIR------NQDYVRVTLDNGQQLR--AKLLIAADGANS 162

Query: 224 NLRRSLCNPKVDVP---SCFVGLV-----LENCNLP-FENHGHVVLADPSPILFYPISSN 274
            +R  L  P  +     +  +  +      + C    F  HG      P  +L  P+  N
Sbjct: 163 KVRELLSIPTEEHDYNQTALIANIRHEQPHQGCAFERFTPHG------PLALL--PLKDN 214

Query: 275 E----VRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNR 330
                V CL       + ++ + E    L+     ++ +            G  KT P +
Sbjct: 215 YRSSLVWCLPSKQADTIANLPDAEFLAELQQAFGWRLGK-----ITQV---GERKTYPLK 266

Query: 331 SMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLR-HLSNLNDAPALCNY 389
              A  +  P  +L+G+A    HP+ G G  + L D+  L  +L     +L     L  Y
Sbjct: 267 LRIAETHVHPRVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDARIDLGTYALLQEY 326

Query: 390 L 390
           L
Sbjct: 327 L 327

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 382

>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional

 Score = 40.9 bits (97), Expect = 0.001
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIER 91
           +D D++V+G+G AG   A   AK G+RV VIER
Sbjct: 3  MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIER 36

Length = 461

>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 63 VIVVGAGVAGAALANTLAKDGRRVHVIERD 92
           +V+GAG  G ALA  LA  G  V V+E+ 
Sbjct: 1  AVVIGAGFGGLALAIRLAAAGIPVTVVEQR 30

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 502

>gnl|CDD|235874 PRK06847, PRK06847, hypothetical protein; Provisional

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 46/180 (25%), Positives = 75/180 (41%), Gaps = 28/180 (15%)

Query: 62  DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLK-LIELG-LED 119
            V++VG G+ G + A  L + G  V ++E D  E       +   G  L+ L ELG L++
Sbjct: 6   KVLIVGGGIGGLSAAIALRRAGIAVDLVEID-PEWRVYGAGITLQGNALRALRELGVLDE 64

Query: 120 CVE---QIDAQRVFGYALFKDGNRTQIS-YPLEKF-HSDVAGRGFHNG----RFVQRLRE 170
           C+E     D   +F      D + T ++  P  +    D+ G     G       + L +
Sbjct: 65  CLEAGFGFDGVDLF------DPDGTLLAELPTPRLAGDDLPGG---GGIMRPALARILAD 115

Query: 171 KA-ASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSL 229
            A A+  +VRL  GT  + +E+     GV      G        L +  DG +S +R  +
Sbjct: 116 AARAAGADVRL--GTTVTAIEQDDD--GVTVTFSDGTTGR--YDLVVGADGLYSKVRSLV 169

Length = 375

>gnl|CDD|182194 PRK10015, PRK10015, oxidoreductase; Provisional

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 57/187 (30%), Positives = 77/187 (41%), Gaps = 42/187 (22%)

Query: 62  DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGG--YLKLIELGLED 119
           D IVVGAGVAG+  A  +A+ G  V VIER  S      G     GG  Y   +E  +  
Sbjct: 7   DAIVVGAGVAGSVAALVMARAGLDVLVIERGDS-----AGCKNMTGGRLYAHTLEAIIPG 61

Query: 120 CVEQIDAQRVFGYALFKDGNRTQISYPLEK------FHSDVAGRGFHNGRFVQR------ 167
                  +R           R +IS+  E+      FH +      H    V R      
Sbjct: 62  FAASAPVERKV--------TREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPW 113

Query: 168 LREKAAS-----LPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCF 222
           L E+A       +P VR     V +L+ E   + GVQ    AG+++   A + I+ DG  
Sbjct: 114 LMEQAEQAGAQFIPGVR-----VDALVREGNKVTGVQ----AGDDILE-ANVVILADGVN 163

Query: 223 SNLRRSL 229
           S L RSL
Sbjct: 164 SMLGRSL 170

Length = 429

>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function prediction only]

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)

Query: 60 DADVIVVGAGVAGAALANTLAK--DGRRVHVIER 91
          D DV+++G G+ GAA A  L++      V ++E+
Sbjct: 3  DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEK 36

Length = 429

>gnl|CDD|232908 TIGR00292, TIGR00292, thiazole biosynthesis enzyme

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 18/35 (51%), Positives = 26/35 (74%)

Query: 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94
          ++DVI+VGAG +G   A  LAK+G +V V+ER L+
Sbjct: 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLA 55

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine. This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 254

>gnl|CDD|145231 pfam01946, Thi4, Thi4 family

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94
          ++DV++VGAG +G   A  LAK G +V +IER LS
Sbjct: 17 ESDVVIVGAGPSGLTAAYYLAKKGLKVAIIERSLS 51

This family includes a putative thiamine biosynthetic enzyme. Length = 229

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score = 39.5 bits (92), Expect = 0.004
 Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 4/54 (7%)

Query: 62  DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIEL 115
           DV+VVGAG  G   A   AK G++V +IE      DR+ G+LL P    +L EL
Sbjct: 138 DVVVVGAGPIGLEAAEAAAKRGKKVTLIEAA----DRLGGQLLDPEVAEELAEL 187

Length = 415

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 39.5 bits (93), Expect = 0.004
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93
           + DV+V+GAG AG   A   A+ G +V ++E+  
Sbjct: 3  KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE 37

Length = 454

>gnl|CDD|180419 PRK06134, PRK06134, putative FAD-binding dehydrogenase; Reviewed

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 33/129 (25%), Positives = 48/129 (37%), Gaps = 36/129 (27%)

Query: 58  PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERD--------------------LSEPD 97
             + DV+V+G+G AG + A T A  G +V V+E+D                    L+   
Sbjct: 10  DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAWSGGWMWIPRNPLARRA 69

Query: 98  RIVGELLQPGGYLK----------LIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPL 147
            IV ++ QP  YL+           I+  LE     +          F DGN   I    
Sbjct: 70  GIVEDIEQPRTYLRHELGARYDAARIDAFLEAGPHMVAFFERHTALRFADGN--AIP--- 124

Query: 148 EKFHSDVAG 156
             +H D  G
Sbjct: 125 -DYHGDTPG 132

Length = 581

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	506
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	100.0
PLN02985	514	squalene monooxygenase	100.0
PTZ00367	567	squalene epoxidase; Provisional	100.0
PRK06126	545	hypothetical protein; Provisional	100.0
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	100.0
PRK08013	400	oxidoreductase; Provisional	100.0
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	100.0
PRK08132	547	FAD-dependent oxidoreductase; Provisional	100.0
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	100.0
PRK08244	493	hypothetical protein; Provisional	100.0
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	100.0
PRK06184	502	hypothetical protein; Provisional	100.0
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	100.0
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	100.0
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	100.0
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	100.0
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	100.0
PRK06185	407	hypothetical protein; Provisional	100.0
PRK08294	634	phenol 2-monooxygenase; Provisional	100.0
PRK06834	488	hypothetical protein; Provisional	100.0
PRK07045	388	putative monooxygenase; Reviewed	100.0
PRK09126	392	hypothetical protein; Provisional	100.0
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	100.0
PRK07190	487	hypothetical protein; Provisional	100.0
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	100.0
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	100.0
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	100.0
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	100.0
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	100.0
PRK06996	398	hypothetical protein; Provisional	100.0
PRK06753	373	hypothetical protein; Provisional	100.0
PRK07588	391	hypothetical protein; Provisional	100.0
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	100.0
PRK06847	375	hypothetical protein; Provisional	100.0
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	100.0
PF08491	276	SE: Squalene epoxidase; InterPro: IPR013698 This d	100.0
PRK06475	400	salicylate hydroxylase; Provisional	100.0
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	100.0
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	100.0
PRK08163	396	salicylate hydroxylase; Provisional	100.0
PRK05868	372	hypothetical protein; Validated	100.0
PRK07538	413	hypothetical protein; Provisional	100.0
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	100.0
PRK07236	386	hypothetical protein; Provisional	100.0
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	100.0
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	100.0
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	100.0
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	100.0
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	100.0
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.97
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	99.97
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	99.97
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.97
PRK11445	351	putative oxidoreductase; Provisional	99.97
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	99.95
PRK10015	429	oxidoreductase; Provisional	99.94
PRK10157	428	putative oxidoreductase FixC; Provisional	99.93
PLN02697	529	lycopene epsilon cyclase	99.93
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	99.93
PLN02463	447	lycopene beta cyclase	99.91
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	99.89
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	99.85
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.6
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.56
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.53
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.52
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.5
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	99.47
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	99.46
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	99.45
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.43
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.43
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	99.41
COG2081	408	Predicted flavoproteins [General function predicti	99.39
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	99.37
PLN02464	627	glycerol-3-phosphate dehydrogenase	99.35
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	99.34
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.33
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.33
PRK07121	492	hypothetical protein; Validated	99.29
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.29
PLN02661	357	Putative thiazole synthesis	99.28
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	99.27
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	99.26
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.25
PRK08274	466	tricarballylate dehydrogenase; Validated	99.25
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.25
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	99.25
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.24
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.24
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.23
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.21
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.19
PRK05257	494	malate:quinone oxidoreductase; Validated	99.18
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	99.18
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	99.17
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	99.17
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	99.17
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	99.17
PRK06175	433	L-aspartate oxidase; Provisional	99.17
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	99.16
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	99.15
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	99.13
COG0579	429	Predicted dehydrogenase [General function predicti	99.13
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.13
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	99.12
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	99.12
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.12
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	99.12
PRK07804	541	L-aspartate oxidase; Provisional	99.12
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	99.11
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	99.11
PRK13339	497	malate:quinone oxidoreductase; Reviewed	99.11
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.11
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	99.11
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	99.1
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	99.1
PRK09077	536	L-aspartate oxidase; Provisional	99.08
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	99.08
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.07
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	99.07
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	99.07
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	99.06
PRK08275	554	putative oxidoreductase; Provisional	99.06
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	99.05
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.05
PRK08071	510	L-aspartate oxidase; Provisional	99.04
PLN02815	594	L-aspartate oxidase	99.04
PRK12839	572	hypothetical protein; Provisional	99.04
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	99.04
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	99.03
PRK12842	574	putative succinate dehydrogenase; Reviewed	99.03
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.02
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	99.02
KOG2853	509	consensus Possible oxidoreductase [General functio	99.01
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	99.01
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	99.0
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.0
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.0
PRK07395	553	L-aspartate oxidase; Provisional	98.98
PRK08401	466	L-aspartate oxidase; Provisional	98.98
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.97
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.96
PRK07512	513	L-aspartate oxidase; Provisional	98.95
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.94
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	98.93
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.93
PLN02612	567	phytoene desaturase	98.92
KOG2852	380	consensus Possible oxidoreductase [General functio	98.91
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.9
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.9
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.89
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.88
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.87
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.87
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	98.87
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.87
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.83
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	98.83
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.83
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.83
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.83
PRK07233	434	hypothetical protein; Provisional	98.81
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	98.8
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.79
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	98.78
PLN02487	569	zeta-carotene desaturase	98.78
PRK14694	468	putative mercuric reductase; Provisional	98.78
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.76
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	98.76
PRK12416	463	protoporphyrinogen oxidase; Provisional	98.74
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	98.74
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.73
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.72
PLN02507	499	glutathione reductase	98.72
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.72
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.71
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.71
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.71
PRK10262	321	thioredoxin reductase; Provisional	98.7
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.68
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.68
PRK06116	450	glutathione reductase; Validated	98.67
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	98.67
PRK07208	479	hypothetical protein; Provisional	98.66
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.66
PRK13748	561	putative mercuric reductase; Provisional	98.64
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.63
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	98.63
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.63
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.58
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.58
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.57
PTZ00058	561	glutathione reductase; Provisional	98.57
PRK14727	479	putative mercuric reductase; Provisional	98.57
PRK06370	463	mercuric reductase; Validated	98.56
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	98.54
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.54
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	98.53
PLN02546	558	glutathione reductase	98.52
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.52
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.52
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.52
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	98.51
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.51
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.47
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.47
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.46
TIGR02053	463	MerA mercuric reductase. This model represents the	98.44
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	98.43
PTZ00052	499	thioredoxin reductase; Provisional	98.42
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	98.42
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.41
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.41
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.39
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.37
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.34
PRK09897	534	hypothetical protein; Provisional	98.31
COG3573	552	Predicted oxidoreductase [General function predict	98.31
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	98.25
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.25
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.23
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.23
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	98.23
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.22
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.21
PRK02106	560	choline dehydrogenase; Validated	98.21
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.21
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	98.19
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	98.19
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.18
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.18
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	98.16
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.15
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	98.13
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	98.13
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.11
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.08
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	98.06
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.05
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	98.04
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.04
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	98.04
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.03
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	98.02
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.01
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.99
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.98
PLN02576	496	protoporphyrinogen oxidase	97.97
COG3349	485	Uncharacterized conserved protein [Function unknow	97.97
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.97
PRK07846	451	mycothione reductase; Reviewed	97.97
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.95
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.94
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	97.94
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	97.92
PRK11883	451	protoporphyrinogen oxidase; Reviewed	97.92
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	97.92
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.91
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	97.91
PRK06370	463	mercuric reductase; Validated	97.91
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.89
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	97.88
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.87
PLN02268	435	probable polyamine oxidase	97.87
KOG2960	328	consensus Protein involved in thiamine biosynthesi	97.85
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.84
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	97.82
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	97.82
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.8
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.79
COG2907	447	Predicted NAD/FAD-binding protein [General functio	97.78
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	97.78
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	97.77
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.76
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	97.75
PRK12831	464	putative oxidoreductase; Provisional	97.75
PRK06116	450	glutathione reductase; Validated	97.75
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.73
PLN02852	491	ferredoxin-NADP+ reductase	97.71
PRK10262	321	thioredoxin reductase; Provisional	97.71
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.71
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.7
PLN02568	539	polyamine oxidase	97.7
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	97.69
PLN02507	499	glutathione reductase	97.69
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.68
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	97.68
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.67
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.67
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	97.66
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.66
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	97.65
PRK07846	451	mycothione reductase; Reviewed	97.65
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	97.65
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	97.64
PLN02676	487	polyamine oxidase	97.6
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.6
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.59
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	97.58
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.58
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.57
PRK14694	468	putative mercuric reductase; Provisional	97.57
PLN02328	808	lysine-specific histone demethylase 1 homolog	97.55
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.54
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	97.53
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.53
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.52
PRK14727	479	putative mercuric reductase; Provisional	97.52
PLN02529	738	lysine-specific histone demethylase 1	97.51
PTZ00188	506	adrenodoxin reductase; Provisional	97.51
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.5
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.5
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	97.5
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.5
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	97.49
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.49
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.47
PTZ00052	499	thioredoxin reductase; Provisional	97.46
PTZ00058	561	glutathione reductase; Provisional	97.46
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.45
PRK13748	561	putative mercuric reductase; Provisional	97.43
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.38
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.37
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.36
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	97.36
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.34
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.33
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.32
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.26
PLN02546	558	glutathione reductase	97.22
PLN02785	587	Protein HOTHEAD	97.22
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.22
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	97.22
PRK12831	464	putative oxidoreductase; Provisional	97.19
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	97.18
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.16
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	97.15
PLN03000	881	amine oxidase	97.12
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	97.06
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.01
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	96.97
PLN02976	1713	amine oxidase	96.97
PRK13984	604	putative oxidoreductase; Provisional	96.91
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	96.84
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	96.82
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	96.79
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	96.73
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	96.69
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	96.62
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	96.53
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	96.37
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	96.29
PRK12779	944	putative bifunctional glutamate synthase subunit b	96.28
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	96.25
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.2
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	96.2
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	96.12
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	96.07
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	96.0
PLN02852	491	ferredoxin-NADP+ reductase	95.9
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	95.7
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	95.7
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	95.69
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	95.69
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	95.64
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	95.63
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	95.6
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	95.54
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	95.52
PRK13984	604	putative oxidoreductase; Provisional	95.49
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	95.46
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	95.35
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.28
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.21
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.13
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	95.13
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	95.09
TIGR02053	463	MerA mercuric reductase. This model represents the	94.97
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	94.92
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	94.81
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	94.74
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	94.44
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	94.11
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	94.09
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	94.08
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	94.0
PRK10669	558	putative cation:proton antiport protein; Provision	93.92
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	93.9
PRK06719	157	precorrin-2 dehydrogenase; Validated	93.82
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.81
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.75
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	93.75
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	93.73
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	93.65
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.64
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.61
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.6
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	93.59
PRK15116	268	sulfur acceptor protein CsdL; Provisional	93.52
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.49
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	93.46
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	93.43
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	93.4
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	93.38
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	93.3
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	93.29
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	93.28
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	93.28
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	93.21
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	93.2
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	93.16
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	93.14
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	92.97
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	92.91
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.85
PRK06567	1028	putative bifunctional glutamate synthase subunit b	92.67
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	92.52
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	92.45
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	92.44
PRK04148	134	hypothetical protein; Provisional	92.4
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	92.12
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	92.07
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	92.05
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	92.05
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	91.94
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.91
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	91.75
PRK10537	393	voltage-gated potassium channel; Provisional	91.73
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	91.72
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	91.72
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	91.65
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	91.64
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	91.58
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	91.55
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	91.37
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	91.36
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	91.35
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	91.31
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	91.31
PRK08328	231	hypothetical protein; Provisional	91.31
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	91.18
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	91.15
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	91.05
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	90.99
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	90.92
PRK03659	601	glutathione-regulated potassium-efflux system prot	90.82
PTZ00082	321	L-lactate dehydrogenase; Provisional	90.75
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	90.73
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	90.63
PRK08223	287	hypothetical protein; Validated	90.5
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	90.46
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	90.46
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	90.43
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	90.43
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	90.38
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	90.36
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	90.27
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.26
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	90.21
PRK07417	279	arogenate dehydrogenase; Reviewed	90.21
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	90.08
PRK08306	296	dipicolinate synthase subunit A; Reviewed	90.02
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	90.01
PRK06223	307	malate dehydrogenase; Reviewed	89.99
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	89.97
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	89.93
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	89.92
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	89.89
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	89.8
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	89.73
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.65
PLN02353	473	probable UDP-glucose 6-dehydrogenase	89.57
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	89.49
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	89.48
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.37
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.36
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	89.27
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	89.27
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	89.27
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	89.22
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	89.09
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	89.01
PRK09496	453	trkA potassium transporter peripheral membrane com	89.01
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	88.98
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	88.81
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	88.76
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	88.76
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	88.7
PRK11730	715	fadB multifunctional fatty acid oxidation complex	88.7
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	88.52
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	88.5
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	88.47
PLN02494	477	adenosylhomocysteinase	88.45
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	88.45
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	88.39
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	88.38
PRK12548	289	shikimate 5-dehydrogenase; Provisional	88.28
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	88.17
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	88.07

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=100.00  E-value=1.9e-70  Score=509.21  Aligned_cols=450  Identities=70%  Similarity=1.149  Sum_probs=431.5

Q ss_pred             CCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEE
Q 010623           55 GECPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYAL  134 (506)
Q Consensus        55 ~~~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~  134 (506)
                      ...+..+||+|||||.+|.++|+.|+|.|.+|.|+||+-..+++..|+.++|+|...|+++|+.|++..++.+...++.+
T Consensus        40 ~~~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~i  119 (509)
T KOG1298|consen   40 ARNDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAI  119 (509)
T ss_pred             hccCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEE
Confidence            34456799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCe
Q 010623          135 FKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPL  214 (506)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~  214 (506)
                      +.+|+...+.||..+++..+.++.+++++|.+.|++.+...+++++.+++|.++.++++.+.||+++++.|++.+..|.+
T Consensus       120 fk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGtV~sLlee~gvvkGV~yk~k~gee~~~~ApL  199 (509)
T KOG1298|consen  120 FKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGTVKSLLEEEGVVKGVTYKNKEGEEVEAFAPL  199 (509)
T ss_pred             EeCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeeeHHHHHhccCeEEeEEEecCCCceEEEecce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999989888899999


Q ss_pred             EEeecCCcccchhhccCCCC-CCccceeeEEEeccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCCCCCCCch
Q 010623          215 TIVCDGCFSNLRRSLCNPKV-DVPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNG  293 (506)
Q Consensus       215 vV~AdG~~S~vR~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  293 (506)
                      .|.|||.+|++|+.+..+.. ...++++|++..+++.+.+++++++++++.++.+||++..++++.+.++++..|.....
T Consensus       200 TvVCDGcfSnlRrsL~~~~v~~V~S~fVG~vl~N~~l~~p~hghvIL~~pspil~Y~ISStEvRcl~~v~g~~~Psi~~g  279 (509)
T KOG1298|consen  200 TVVCDGCFSNLRRSLCDPKVEEVPSYFVGLVLKNCRLPAPNHGHVILSKPSPILVYQISSTEVRCLVDVPGQKLPSIANG  279 (509)
T ss_pred             EEEecchhHHHHHHhcCCcccccchheeeeeecCCCCCCCCcceEEecCCCcEEEEEecchheEEEEecCcccCCcccch
Confidence            99999999999999987554 37789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHHHH
Q 010623          294 EMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNL  373 (506)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~  373 (506)
                      ++..++.+.+.|++|+.+++.|.++++.+.++..|...+++......+++|+|||..+-||.+|.||..++.|...|.+.
T Consensus       280 em~~~mk~~v~PqiP~~lR~~F~~av~~g~irsmpn~~mpa~~~~~~G~illGDAfNMRHPltggGMtV~l~Di~lLr~l  359 (509)
T KOG1298|consen  280 EMATYMKESVAPQIPEKLRESFLEAVDEGNIRSMPNSSMPATLNDKKGVILLGDAFNMRHPLTGGGMTVALSDIVLLRRL  359 (509)
T ss_pred             hHHHHHHHhhCcCCCHHHHHHHHHHhhccchhcCccccCCCCcCCCCceEEEcccccccCCccCCceEeehhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCchhHHHhhcCCCC
Q 010623          374 LRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNP  453 (506)
Q Consensus       374 L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~  453 (506)
                      |....+..+...+.+.+++|...|+|....++.++.+++++|....+....++|+.||+|+.+|+.+.++++.+++|+.|
T Consensus       360 l~pl~dL~d~ekv~~~i~sFy~~RKp~s~tINtLa~Aly~vf~as~dea~~~mr~gCfdYl~~GG~c~sGpv~lLsGlnP  439 (509)
T KOG1298|consen  360 LKPLPDLSDAEKVSDYIKSFYWIRKPYSATINTLANALYQVFVASTDEARKAMRKGCFDYLKRGGFCVSGPVALLSGLNP  439 (509)
T ss_pred             hccccccccHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCccccchHHHhcCCCC
Confidence            99988888999999999999999999999999999999999999779999999999999999999999999999999999


Q ss_pred             CchhhHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHH---HHHHHHHhhhhh
Q 010623          454 RPLILVFHFFAVAIYGVGRILLPFPSPYRFWIGARIITV---CILPAMLDNQIF  504 (506)
Q Consensus       454 ~p~~~~~h~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  504 (506)
                      +|.++..||+++.+|+++..+.++|.|.+.|++..++..   +++|+++.|...
T Consensus       440 ~Pl~Lv~HffAValy~i~~ll~p~PsP~riw~s~~i~~~A~~vi~P~i~aEgv~  493 (509)
T KOG1298|consen  440 RPLSLVLHFFAVALYGIYRLLSPFPSPRRIWESLRILSLASSVIFPIIKAEGVS  493 (509)
T ss_pred             CchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence            999999999999999999999999999999999999998   999999998653

>PLN02985 squalene monooxygenase

Probab=100.00  E-value=9.7e-66  Score=531.33  Aligned_cols=483  Identities=49%  Similarity=0.840  Sum_probs=395.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCCCcccCCCCCCCCcEEEECCCHHHHHHHHHHHHCC
Q 010623            4 QYTWGLILGAVLGLVAVYNLGLLALYNLVMRSKSEDNGADSLRKTPTTALNGECPFDADVIVVGAGVAGAALANTLAKDG   83 (506)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~~A~~La~~G   83 (506)
                      .+.|++++..|++++.++.     +.|.    +|+ .  ....   +....+.....+||+|||||++|+++|+.|+++|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~-----~~~~----~~~-~--~~~~---~~~~~~~~~~~~DViIVGAG~aGlalA~aLa~~G   66 (514)
T PLN02985          2 THVCLWTLLAFVLTWTVFY-----VTNR----KKK-A--TELA---DAVAEERKDGATDVIIVGAGVGGSALAYALAKDG   66 (514)
T ss_pred             cchHHHHHHHHHHHHHHHH-----Hhhh----hhh-h--cchh---hhhcccCcCCCceEEEECCCHHHHHHHHHHHHcC
Confidence            4678899999999998865     2222    111 1  1100   0011112234689999999999999999999999


Q ss_pred             CcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCceeeeecCCcC--CCCCcccccccc
Q 010623           84 RRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEK--FHSDVAGRGFHN  161 (506)
Q Consensus        84 ~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~  161 (506)
                      ++|+|+||.+....+..|..+++++.+.|+++|+++.+......+..++.++.+++.....++...  ......++.++|
T Consensus        67 ~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~i~r  146 (514)
T PLN02985         67 RRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDGKEAVAPFPVDNNNFPYEPSARSFHN  146 (514)
T ss_pred             CeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEECCEEEEEeCCCCCcCCCcccceeeeec
Confidence            999999998766667788999999999999999999988765567777888777765555555322  122345678999


Q ss_pred             hHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccchhhccCCCCCCcccee
Q 010623          162 GRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFV  241 (506)
Q Consensus       162 ~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~~l~~~~~~~~~~~~  241 (506)
                      .+|.+.|++.+.+.+++++..++++++.++++.+.+|++.+.+|++.+++||+||+|||.+|.+|++++.+.........
T Consensus       147 ~~l~~~L~~~a~~~~~V~i~~gtvv~li~~~~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~vR~~l~~~~~~~~s~~~  226 (514)
T PLN02985        147 GRFVQRLRQKASSLPNVRLEEGTVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLNDNNAEVLSYQV  226 (514)
T ss_pred             HHHHHHHHHHHHhCCCeEEEeeeEEEEEEcCCEEEEEEEEcCCCCEEEEECCEEEECCCCchHHHHHhccCCCcceeEeE
Confidence            99999999999988899999889988888777777888877788877788999999999999999999875543333444


Q ss_pred             eEEEeccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCCCCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcC
Q 010623          242 GLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDG  321 (506)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (506)
                      ++...+...+.++..++++++++++.+||+++++.++++..+.+..++.+..+..+++.+...+.+++.+.+.+...++.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~l~ypi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~  306 (514)
T PLN02985        227 GYISKNCRLEEPEKLHLIMSKPSFTMLYQISSTDVRCVFEVLPDNIPSIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDE  306 (514)
T ss_pred             EEEEccccCCCCCcceEEcCCCceEEEEEeCCCeEEEEEEEeCCCCCCcChhhHHHHHHhccccccCHHHHHHHHhhccc
Confidence            55444445556667788888888999999999998888888776666666677788887766677888888777655544


Q ss_pred             C-CeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcch
Q 010623          322 G-NIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPV  400 (506)
Q Consensus       322 ~-~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~  400 (506)
                      . .+..++....+...+..+|++|+|||||+++|++|||||+|++||..|++.|....+..+..+..++|++|+++|+++
T Consensus       307 ~~~~~~~p~~~l~~~~~~~~~vvLiGDAaH~~~P~~GQGmn~AleDA~vLa~lL~~~~~~~~~~~~~~aL~~y~~~Rk~r  386 (514)
T PLN02985        307 GAHIKVVPTKRMSATLSDKKGVIVLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNANKVSEVIKSFYDIRKPM  386 (514)
T ss_pred             ccceeecCcccccccccCCCCEEEEecccccCCCCccccHhHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhhcc
Confidence            3 466777766666777789999999999999999999999999999999999987544445567889999999999999


Q ss_pred             hHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCchhHHHhhcCCCCCchhhHHHHHHHHHHHHHHhhccCCCh
Q 010623          401 ASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPFPSP  480 (506)
Q Consensus       401 ~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~~~~h~~~~~l~~~~~~l~~~~~~  480 (506)
                      +..++.+|+.++++|...+++..+.+|+.||+|+.+|+.+.++|+.+++|+.|+|..++.|||.|.+|+++..+...+.|
T Consensus       387 ~~~i~~la~al~~~f~a~~~~~~~~l~~~~f~y~~~g~~~~~~~~~ll~~~~~~p~~l~~h~~~v~~~~~~~~~~~~~~~  466 (514)
T PLN02985        387 SATVNTLGNAFSQVLVASTDEAKEAMRQGCYDYLCSGGFRTSGMMALLGGMNPRPLSLIYHLCAITLSSIGHLLSPFPSP  466 (514)
T ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCccccccHHHHcCCCCCcHHHHHHHHHHHHHHHHHHhcccCCh
Confidence            99999999999999975458889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH---HHHHHHHhh
Q 010623          481 YRFWIGARIITV---CILPAMLDN  501 (506)
Q Consensus       481 ~~~~~~~~~~~~---~~~~~~~~~  501 (506)
                      .+.|+++.++|+   +|+|+++.|
T Consensus       467 ~~~~~~~~~~~~a~~~~~p~~~~e  490 (514)
T PLN02985        467 LRIWHSLRLFGLALKMLVPHLKAE  490 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHH
Confidence            999999999999   999999999

>PTZ00367 squalene epoxidase; Provisional

Probab=100.00  E-value=6.4e-59  Score=482.10  Aligned_cols=432  Identities=43%  Similarity=0.701  Sum_probs=349.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC-CCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC-
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL-SEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD-  137 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~-~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~-  137 (506)
                      ++||+||||||+|+++|+.|+++|++|+|+||++ ....+..|..+++++.++|+++|+++.+..... +..++.+++. 
T Consensus        33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~LGL~d~l~~i~~-~~~~~~v~~~~  111 (567)
T PTZ00367         33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKELGMEECAEGIGM-PCFGYVVFDHK  111 (567)
T ss_pred             CccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhhhhhcCHHHHHHHHHCCChhhHhhcCc-ceeeeEEEECC
Confidence            5899999999999999999999999999999986 233456788899999999999999998876554 3667777664 


Q ss_pred             CceeeeecCCcCCCCCcccccccchHHHHHHHHHH--HcCCCEEEEeceEEEEEeeCC----eEEEEEEEeCCc------
Q 010623          138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKA--ASLPNVRLEQGTVTSLLEEKG----TIKGVQYKTKAG------  205 (506)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~--~~~~~v~i~~~~v~~~~~~~~----~v~~v~v~~~~G------  205 (506)
                      +......++     ....+..++++++.+.|++.+  ...+++++..++|+++.++++    ++.+|++...++      
T Consensus       112 G~~~~i~~~-----~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~~~v~~l~~~~~~~~~~v~gV~~~~~~~~~~~~~  186 (567)
T PTZ00367        112 GKQVKLPYG-----AGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLEGTVNSLLEEGPGFSERAYGVEYTEAEKYDVPEN  186 (567)
T ss_pred             CCEEEecCC-----CCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEEeEEEEeccccCccCCeeEEEEEecCCccccccc
Confidence            443333322     223355678899999999888  445688888778988876554    367787765542      


Q ss_pred             ---------------cEEEEEcCeEEeecCCcccchhhccCCCC--CCccceeeEEEeccCCCCCCeeEEEecCCCcEEE
Q 010623          206 ---------------EELTAYAPLTIVCDGCFSNLRRSLCNPKV--DVPSCFVGLVLENCNLPFENHGHVVLADPSPILF  268 (506)
Q Consensus       206 ---------------~~~~i~a~~vV~AdG~~S~vR~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (506)
                                     +..+++||+||+|||.+|.+|++++....  .....+.+....+...+.++...+++++++++++
T Consensus       187 ~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~g~~~~~~~lp~~~~~~v~~g~~gpi~~  266 (567)
T PTZ00367        187 PFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFVGLVLKNVRLPKEQHGTVFLGKTGPILS  266 (567)
T ss_pred             ccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEEEEEEecccCCCCCeeEEEEcCCceEEE
Confidence                           12457899999999999999999976432  2345566666656667777778888999999999


Q ss_pred             EecCCCeEEEEEEecCCCCCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcC-CCeEEecCCccCCCCCCCCcEEEEcc
Q 010623          269 YPISSNEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDG-GNIKTMPNRSMPAAPYPTPGALLMGD  347 (506)
Q Consensus       269 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~rv~LvGD  347 (506)
                      ||+++++.++++.++....++  .++..+++.+...+.+++++.+.+...+.. +.+..++....++.+|..+|++|+||
T Consensus       267 yPl~~~~~r~lv~~~~~~~p~--~~~~~~~l~~~~~p~l~~~l~~~f~~~l~~~~~l~~~p~~~~p~~~~~~~gvvLIGD  344 (567)
T PTZ00367        267 YRLDDNELRVLVDYNKPTLPS--LEEQSEWLIEDVAPHLPENMRESFIRASKDTKRIRSMPNARYPPAFPSIKGYVGIGD  344 (567)
T ss_pred             EEcCCCeEEEEEEecCCcCCC--hHHHHHHHHHhhcccCcHHHHHHHHHhhcccCCeEEeeHhhCCCccCCCCCEEEEEc
Confidence            999999888888776443222  234566676666677888888777665532 45777788877777888899999999


Q ss_pred             CCCCCCCCcchhhHHHHHHHHHHHHHhhhcC-----CCCChHHHHHHHH----HHHHHhcchhHHHHHHHHHHHHHHcCC
Q 010623          348 AFNMRHPLTGGGMTVALSDIVILRNLLRHLS-----NLNDAPALCNYLE----SFYTLRKPVASTINTLAGALYQVFSAS  418 (506)
Q Consensus       348 AAh~~~P~~GqG~n~ai~Da~~La~~L~~~~-----~~~~~~~~~~~L~----~Y~~~R~~~~~~~~~~s~~~~~~~~~~  418 (506)
                      |||+++|++|||||+||+||..|++.|....     +.++..+++++|+    .|+++|++++..++.+++.++++|+. 
T Consensus       345 AAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~~~~d~~d~~~v~~aL~~~~~~Y~~~Rk~~a~~i~~ls~aL~~lf~~-  423 (567)
T PTZ00367        345 HANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSIDQNEMAEIEDAIQAAILSYARNRKTHASTINILSWALYSVFSS-  423 (567)
T ss_pred             ccCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHhCh-
Confidence            9999999999999999999999999998542     2223335677787    99999999999999999999999976 


Q ss_pred             CchhHHHHHHHHHHHHhcCCCCchhHHHhhcCCCCCchhhHHHHHHHHHHHHHHhhcc----------------------
Q 010623          419 PDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLP----------------------  476 (506)
Q Consensus       419 ~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~~~~h~~~~~l~~~~~~l~~----------------------  476 (506)
                           ..+|+.||+|+..|+.+.++|+.+++|+.++|..++.|||.|.+|+++.++.+                      
T Consensus       424 -----~~lr~~~~~y~~~gg~~~~~p~~ll~g~~~~p~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  498 (567)
T PTZ00367        424 -----PALRDACLDYFSLGGECVTGPMSLLSGLDPSPGGLLFHYFSVALYGVLNLIMETGAYSIFGKQLSSFEKLTNVAS  498 (567)
T ss_pred             -----HHHHHHHHHHHhcCCccccccHHHHcCCCCCcHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence                 47999999999999999999999999999999999999999999999998887                      


Q ss_pred             -CCChHHHHHHHHHHHH---HHHHHHHhhhhhc
Q 010623          477 -FPSPYRFWIGARIITV---CILPAMLDNQIFL  505 (506)
Q Consensus       477 -~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  505 (506)
                       ++.|.+.|+++.++|.   +++|+++.|+.+|
T Consensus       499 ~~~~~~~~~~~~~~~~~a~~~~~p~~~~e~~~~  531 (567)
T PTZ00367        499 FFVDPERIKHALYLLGAATTIAAPLAKSEFVSL  531 (567)
T ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             4679999999999999   9999999998765

>PRK06126 hypothetical protein; Provisional

Probab=100.00  E-value=8.5e-49  Score=413.48  Aligned_cols=407  Identities=22%  Similarity=0.255  Sum_probs=284.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccce--ecceEEE-
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQR--VFGYALF-  135 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~--~~~~~~~-  135 (506)
                      .++||+||||||+||++|+.|+++|++|+|+||.+.....+++..++++++++|+++|+++.+.+.....  ......+ 
T Consensus         6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~   85 (545)
T PRK06126          6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFT   85 (545)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEe
Confidence            4689999999999999999999999999999999877777888889999999999999999887754221  0111111 


Q ss_pred             -ECCcee-eeecCCcC------------CCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEE
Q 010623          136 -KDGNRT-QISYPLEK------------FHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQY  200 (506)
Q Consensus       136 -~~~~~~-~~~~~~~~------------~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v  200 (506)
                       ..+... ...++...            +......+.++|..+++.|.+.+.+.+++++++++ |+++.++++++. +++
T Consensus        86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~-v~~  164 (545)
T PRK06126         86 RLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVT-ATV  164 (545)
T ss_pred             cCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEE-EEE
Confidence             122211 11111100            01112245688999999999999887789999885 999998887665 555


Q ss_pred             Ee-CCccEEEEEcCeEEeecCCcccchhhccCCCCCCcc--ceeeEEEeccCC----CCC-CeeEEEecCCCcEEEEecC
Q 010623          201 KT-KAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPS--CFVGLVLENCNL----PFE-NHGHVVLADPSPILFYPIS  272 (506)
Q Consensus       201 ~~-~~G~~~~i~a~~vV~AdG~~S~vR~~l~~~~~~~~~--~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~p~~  272 (506)
                      .+ .+|++.++++|+||+|||++|.+|+++++...+...  ....+.+...++    +.. ...++++.++....+++..
T Consensus       165 ~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~  244 (545)
T PRK06126        165 EDLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAALVGHDPAWMYWLFNPDRRGVLVAID  244 (545)
T ss_pred             EECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHHhcCCCceEEEEECCCccEEEEEEC
Confidence            54 567767889999999999999999999987654432  122222221111    111 1233445555566677776


Q ss_pred             CCeEEEEEE-ecCC-CCCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCC
Q 010623          273 SNEVRCLVD-IPGQ-KVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFN  350 (506)
Q Consensus       273 ~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh  350 (506)
                      ++. .|.+. .+.. .....+.+++.+.+++.+.+.++.++          .....|......+++|..|||+|+|||||
T Consensus       245 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----------~~~~~w~~~~~~a~~~~~gRv~L~GDAAH  313 (545)
T PRK06126        245 GRD-EWLFHQLRGGEDEFTIDDVDARAFVRRGVGEDIDYEV----------LSVVPWTGRRLVADSYRRGRVFLAGDAAH  313 (545)
T ss_pred             CCC-eEEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCeEE----------EeecccchhheehhhhccCCEEEechhhc
Confidence            554 45444 3322 22234556677777765543222111          12234556667789999999999999999


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCC--------Cchh
Q 010623          351 MRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSAS--------PDEA  422 (506)
Q Consensus       351 ~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~--------~~~~  422 (506)
                      .++|++|||+|+||+||.+|+|+|+.+.+   +.+.+++|++|+++|+|++..++..+..+...+...        +++.
T Consensus       314 ~~~P~~GqG~N~gieDa~~La~~La~~~~---~~~~~~lL~~Y~~eR~p~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  390 (545)
T PRK06126        314 LFTPTGGYGMNTGIGDAVNLAWKLAAVLN---GWAGPALLDSYEAERRPIAARNTDYARRNADALGSFPVPPEIEDDGPA  390 (545)
T ss_pred             cCCCCcCcccchhHHHHHHHHHHHHHHHc---CCCcHHHHhhhHHHhhHHHHHHHHHHHHHHHHhcccccchhhccCChh
Confidence            99999999999999999999999997642   233468999999999999999999888776655321        1233


Q ss_pred             HHHHHHHHHHHH-------------hcCCCCchhHHHhhc------------CCCCCchhhHHHHHH------HHHHHHH
Q 010623          423 RKEMRQACFDYL-------------SLGGIFSSGPVSLLS------------GLNPRPLILVFHFFA------VAIYGVG  471 (506)
Q Consensus       423 ~~~~r~~~~~~~-------------~~g~~~~~~~~~~~~------------~~~~~p~~~~~h~~~------~~l~~~~  471 (506)
                      ...+|+.+.+++             ..|++|.++++...+            ...++||.|+||.|+      +||+|.+
T Consensus       391 ~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~pG~r~ph~~l~~~~s~~dl~g~~  470 (545)
T PRK06126        391 GDAARRKVGDALSEHARQEFNSPGITLGYRYDGSPIIVPDGTPPPPDDPGVYVPSACPGGRAPHAWLSDGRSLYDLFGPG  470 (545)
T ss_pred             HHHHHHHHHHHHhhccccccccceeeecceecCCceecCCCCCCCCCcccccccCCCCCcCCCCeeecCCcchHHhcCCc
Confidence            344555554433             267888887765422            124789999999997      9999999


Q ss_pred             HhhccCCCh
Q 010623          472 RILLPFPSP  480 (506)
Q Consensus       472 ~~l~~~~~~  480 (506)
                      |+|+++...
T Consensus       471 f~Ll~~~~~  479 (545)
T PRK06126        471 FTLLRFGDA  479 (545)
T ss_pred             eEEEecCCC
Confidence            999997653

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=100.00  E-value=2.2e-47  Score=385.49  Aligned_cols=364  Identities=25%  Similarity=0.315  Sum_probs=281.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERD-LSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG  138 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~-~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (506)
                      .+||+||||||+||++|+.|++.|++|+|+||. .......++..++++++++|+++|+.+.+......+.....++.++
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~   81 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG   81 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence            589999999999999999999999999999998 3444566888999999999999999766666555455555555544


Q ss_pred             ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEe
Q 010623          139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV  217 (506)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~  217 (506)
                      . ....++.........++.++|..+.+.|.+.+.+.++++++.++ |+.+.++++.+. +++.. ||+  +++||+||+
T Consensus        82 ~-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~-v~l~~-dG~--~~~a~llVg  156 (387)
T COG0654          82 R-RLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVT-VTLSF-DGE--TLDADLLVG  156 (387)
T ss_pred             c-eeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceE-EEEcC-CCc--EEecCEEEE
Confidence            4 33444444444466778999999999999999999889999985 999999988665 66554 887  577999999


Q ss_pred             ecCCcccchhhccCCC-CCCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCC---CCCCCc
Q 010623          218 CDGCFSNLRRSLCNPK-VDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQK---VPSISN  292 (506)
Q Consensus       218 AdG~~S~vR~~l~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~~~~  292 (506)
                      |||.+|.+|+++++.. ....+...++... ..+.+.......++.+.+++.++|++++.....|..+...   ...++.
T Consensus       157 ADG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  236 (387)
T COG0654         157 ADGANSAVRRAAGIAEFSGRDYGQTALVANVEPEEPHEGRAGERFTHAGPFALLPLPDNRSSVVWSLPPGPAEDLQGLSD  236 (387)
T ss_pred             CCCCchHHHHhcCCCCccCCCCCceEEEEEeecCCCCCCeEEEEecCCCceEEEecCCCceeEEEECChhhHHHHhcCCH
Confidence            9999999999999433 3334445554443 3334666777788899999999999977667777666432   233444


Q ss_pred             hHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHHH
Q 010623          293 GEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRN  372 (506)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~  372 (506)
                      +.....+.+.+....+      +...........+|+....+.+|..+||+|+|||||.++|++|||+|+||+||.+|++
T Consensus       237 ~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~pl~~~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~  310 (387)
T COG0654         237 EEFLRELQRRLGERDP------LGRVTLVSSRSAFPLSLRVAERYRRGRVVLIGDAAHAMHPLAGQGANLALEDAAALAE  310 (387)
T ss_pred             HHHHHHHHHhcCcccc------cceEEEccccccccccchhhhheecCcEEEEeeccccCCCccccchhhhhhhHHHHHH
Confidence            4444444443322111      1122233456678888888999999999999999999999999999999999999999


Q ss_pred             HhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCC
Q 010623          373 LLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGG  438 (506)
Q Consensus       373 ~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~  438 (506)
                      +|.+....+.  + +.+|+.|+++|++++..++..++.+.+.|... .+....+|+..+.++...+
T Consensus       311 ~L~~~~~~~~--~-~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~-~~~~~~~r~~~l~~~~~~~  372 (387)
T COG0654         311 ALAAAPRPGA--D-AAALAAYEARRRPRAEAIQKLSRALGRLFSAD-GPFARFLRNLGLRLLDRLP  372 (387)
T ss_pred             HHHHHhhcCc--c-HHHHHHHHHhhhhHHHHHHHHHHHHhhhhccC-CcHHHHHHHHHHHhhccCc
Confidence            9998643111  1 78999999999999999999999999999987 8899999999988875444

>PRK08013 oxidoreductase; Provisional

Probab=100.00  E-value=4.2e-47  Score=385.58  Aligned_cols=377  Identities=19%  Similarity=0.213  Sum_probs=263.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCc------ccccccccchHHHHHHhCchhHHhhcccceecceE
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDR------IVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYA  133 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~------~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  133 (506)
                      ++||+||||||+|+++|+.|+++|++|+|+||.+.+...      .++..++++++++|+++|+++.+......+..+..
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~   82 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME   82 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence            589999999999999999999999999999998764321      24456899999999999999988764444556666


Q ss_pred             EEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEc
Q 010623          134 LFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYA  212 (506)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a  212 (506)
                      +++........+..........++.++|..|++.|.+.+.+.+++++++++ |++++++++.   ++++..+|+  +++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~---v~v~~~~g~--~i~a  157 (400)
T PRK08013         83 VWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE---AFLTLKDGS--MLTA  157 (400)
T ss_pred             EEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe---EEEEEcCCC--EEEe
Confidence            665432222233222222233457899999999999999988789998885 9999887764   455566776  4779


Q ss_pred             CeEEeecCCcccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCCe-EEEEEEecCCCCC--
Q 010623          213 PLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNE-VRCLVDIPGQKVP--  288 (506)
Q Consensus       213 ~~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~--  288 (506)
                      |+||+|||.+|.+|++++++.....+...++... ..+.+.......++..++++.++|..++. .++++..+.+..+  
T Consensus       158 ~lvVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~  237 (400)
T PRK08013        158 RLVVGADGANSWLRNKADIPLTFWDYQHHALVATIRTEEPHDAVARQVFHGDGILAFLPLSDPHLCSIVWSLSPEEAQRM  237 (400)
T ss_pred             eEEEEeCCCCcHHHHHcCCCccccccCcEEEEEEEeccCCCCCEEEEEEcCCCCEEEEECCCCCeEEEEEEcCHHHHHHH
Confidence            9999999999999999998765554444433322 22233333445566677788999998754 4666665532111  


Q ss_pred             -CCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHH
Q 010623          289 -SISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDI  367 (506)
Q Consensus       289 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da  367 (506)
                       ....+++.+.+...+    ++.+.    ...-......++.....+++|..|||+|+|||||.++|++|||+|+||+||
T Consensus       238 ~~~~~~~~~~~l~~~~----~~~l~----~~~~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gi~Da  309 (400)
T PRK08013        238 QQAPEEEFNRALAIAF----DNRLG----LCELESERQVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDA  309 (400)
T ss_pred             HcCCHHHHHHHHHHHH----hHhhC----ceEecCCccEEecceeecccccCCcEEEEechhhcCCccccCchhhhHHHH
Confidence             112222333222211    11110    000011223566666678999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCchhHHHh
Q 010623          368 VILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSL  447 (506)
Q Consensus       368 ~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~  447 (506)
                      .+|+++|......+.......+|++|+++|++++..++..++.+.++|..+ ++....+|+..+..+...+......+..
T Consensus       310 ~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~l~~~~-~~~~~~~R~~~l~~~~~~~~~~~~~~~~  388 (400)
T PRK08013        310 AELIAELRRLHRQGKDIGQHLYLRRYERSRKHSAALMLAGMQGFRDLFAGN-NPAKKLLRDIGLKLADTLPGVKPQLIRQ  388 (400)
T ss_pred             HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence            999999986432111111235899999999999999999999999999876 8888899999888775544333333333


Q ss_pred             hcC
Q 010623          448 LSG  450 (506)
Q Consensus       448 ~~~  450 (506)
                      +.|
T Consensus       389 ~~g  391 (400)
T PRK08013        389 AMG  391 (400)
T ss_pred             Hcc
Confidence            344

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=100.00  E-value=4.8e-47  Score=386.20  Aligned_cols=379  Identities=21%  Similarity=0.224  Sum_probs=272.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCC----CcccccccccchHHHHHHhCchhHHhhcccceecceE
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERD-LSEP----DRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYA  133 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~-~~~~----~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  133 (506)
                      ..+||+||||||+|+++|+.|+++|++|+|+|+. +...    ...++..++++++++|+++|+++.+.+....+...+.
T Consensus         3 ~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~   82 (405)
T PRK08850          3 QSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAME   82 (405)
T ss_pred             CcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEE
Confidence            3689999999999999999999999999999996 3211    2346678999999999999999998765445566677


Q ss_pred             EEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEc
Q 010623          134 LFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYA  212 (506)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a  212 (506)
                      +|+........++.........++.+++..+.+.|.+.+.+.++++++.+ +|+++.++++.   +.+..++|+  +++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~---~~v~~~~g~--~~~a  157 (405)
T PRK08850         83 VWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE---AWLTLDNGQ--ALTA  157 (405)
T ss_pred             EEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe---EEEEECCCC--EEEe
Confidence            77654333333433322233456778899999999999988778999888 59999887764   445567776  4679


Q ss_pred             CeEEeecCCcccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCC-eEEEEEEecCCCC---
Q 010623          213 PLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSN-EVRCLVDIPGQKV---  287 (506)
Q Consensus       213 ~~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~---  287 (506)
                      |+||+|||.+|.+|+.++++.....+...++... ..+.+.....+.++++++++.++|+.++ ..++.|..+.+..   
T Consensus       158 ~lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~lp~~~~~~~~~~w~~~~~~~~~~  237 (405)
T PRK08850        158 KLVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTVDPHNSVARQIFTPQGPLAFLPMSEPNMSSIVWSTEPLRAEAL  237 (405)
T ss_pred             CEEEEeCCCCChhHHHcCCCeeEEeeccEEEEEEEEccCCCCCEEEEEEcCCCceEEEECCCCCeEEEEEECCHHHHHHH
Confidence            9999999999999999998765444433333322 2233344445667888889999999864 4566676653211   


Q ss_pred             CCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHH
Q 010623          288 PSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDI  367 (506)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da  367 (506)
                      ...+.+++.+.+.+.+.+.+.        ..........+|.....+.+|.++||+|+|||||.++|+.|||+|+||+||
T Consensus       238 ~~~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~~~pl~~~~~~~~~~~rv~LiGDAAH~~~P~~GQG~n~ai~Da  309 (405)
T PRK08850        238 LAMSDEQFNKALTAEFDNRLG--------LCEVVGERQAFPLKMRYARDFVRERVALVGDAAHTIHPLAGQGVNLGLLDA  309 (405)
T ss_pred             HcCCHHHHHHHHHHHHhhhhC--------cEEEcccccEEecceeeccccccCcEEEEEhhhhcCCccccccHHHHHHHH
Confidence            122233344333332211110        000011234566666678899999999999999999999999999999999


Q ss_pred             HHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCchhHHHh
Q 010623          368 VILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSL  447 (506)
Q Consensus       368 ~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~  447 (506)
                      .+|+|+|......+.+...+.+|++|+++|++++..++..++.+.++|... ++....+|+..+..+..-+......+..
T Consensus       310 ~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~-~~~~~~~R~~~l~~~~~~~~~k~~~~~~  388 (405)
T PRK08850        310 ASLAQEILALWQQGRDIGLKRNLRGYERWRKAEAAKMIAAMQGFRDLFSGS-NPAKKLVRGIGMSLAGQLPGAKDEIMKR  388 (405)
T ss_pred             HHHHHHHHHHHhcCCCcchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence            999999986532222223468999999999999999999999999999876 7888999999988777655444444444


Q ss_pred             hcCC
Q 010623          448 LSGL  451 (506)
Q Consensus       448 ~~~~  451 (506)
                      ..|+
T Consensus       389 ~~g~  392 (405)
T PRK08850        389 ALGL  392 (405)
T ss_pred             HhCC
Confidence            4444

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=100.00  E-value=5.7e-47  Score=399.23  Aligned_cols=402  Identities=18%  Similarity=0.159  Sum_probs=275.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG  138 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (506)
                      .++||+||||||+||++|+.|+++|++|+|+||.+.....+++..++++++++|+++|+.+.+.+.... ......+..+
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~-~~~~~~~~~~  100 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVS-WNVGKVFLRD  100 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCce-eeceeEEeCC
Confidence            568999999999999999999999999999999987766677888999999999999999888664322 2222233222


Q ss_pred             ceeeeecCCcC-C-CCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeE
Q 010623          139 NRTQISYPLEK-F-HSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLT  215 (506)
Q Consensus       139 ~~~~~~~~~~~-~-~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~v  215 (506)
                      .. ...++... . ...+....++|..+++.|.+.+.+.+++++++++ ++++.++++.+. +++.+.+|+ .+++||+|
T Consensus       101 ~~-~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~-v~~~~~~g~-~~i~ad~v  177 (547)
T PRK08132        101 EE-VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVT-LTVETPDGP-YTLEADWV  177 (547)
T ss_pred             Ce-EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEE-EEEECCCCc-EEEEeCEE
Confidence            21 12222111 1 1112234578889999999999988788998885 999988877554 555555554 45789999


Q ss_pred             EeecCCcccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEec----CCCcEEEEecCCCeEEEEEEecCCCC--C
Q 010623          216 IVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLA----DPSPILFYPISSNEVRCLVDIPGQKV--P  288 (506)
Q Consensus       216 V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~--~  288 (506)
                      |+|||.+|.+|+.++++..+.......++.. ..+.+.+.....++.    ++..+++.|..++.+++.+.......  .
T Consensus       178 VgADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (547)
T PRK08132        178 IACDGARSPLREMLGLEFEGRTFEDRFLIADVKMKADFPTERWFWFDPPFHPGQSVLLHRQPDNVWRIDFQLGWDADPEA  257 (547)
T ss_pred             EECCCCCcHHHHHcCCCCCCccccceEEEEEEEecCCCCCeeeEEEeccCCCCcEEEEEeCCCCeEEEEEecCCCCCchh
Confidence            9999999999999998766544333222221 111122223334443    23345556666665444443332211  1


Q ss_pred             CCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHH
Q 010623          289 SISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIV  368 (506)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~  368 (506)
                      ..+.+++.+.+++.+.+..+          ........|+.....+++|++|||+|+|||||.++|++|||+|+||+||.
T Consensus       258 ~~~~~~~~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~a~~~~~gRV~L~GDAAH~~~P~~GqG~n~gi~DA~  327 (547)
T PRK08132        258 EKKPENVIPRVRALLGEDVP----------FELEWVSVYTFQCRRMDRFRHGRVLFAGDAAHQVSPFGARGANSGIQDAD  327 (547)
T ss_pred             hcCHHHHHHHHHHHcCCCCC----------eeEEEEEeeeeeeeeecccccccEEEEecccccCCCcccccccchHHHHH
Confidence            12334444445443321100          01112234556667789999999999999999999999999999999999


Q ss_pred             HHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHH--------------
Q 010623          369 ILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYL--------------  434 (506)
Q Consensus       369 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~--------------  434 (506)
                      +|+|+|+.+..   +.+.+++|++|++||+|+++.++..+..+..++... ++....+|+..+..+              
T Consensus       328 ~LawkLa~vl~---g~~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~  403 (547)
T PRK08132        328 NLAWKLALVLR---GRAPDSLLDSYASEREFAADENIRNSTRSTDFITPK-SPVSRLFRDAVLRLARDHPFARRLVNSGR  403 (547)
T ss_pred             HHHHHHHHHHc---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC-CHHHHHHHHHHHhhhcccHHHHHHHhccc
Confidence            99999998653   234578999999999999999999888888877654 566666676554321              


Q ss_pred             -hcCCCCchhHHHhhc----CCCCCchhhHHHHHH---------HHHHHHHHhhccCC
Q 010623          435 -SLGGIFSSGPVSLLS----GLNPRPLILVFHFFA---------VAIYGVGRILLPFP  478 (506)
Q Consensus       435 -~~g~~~~~~~~~~~~----~~~~~p~~~~~h~~~---------~~l~~~~~~l~~~~  478 (506)
                       ..+..|..+++...+    ...++||.|+||.|+         .|++|.+|+|+.+.
T Consensus       404 ~~~~~~y~~~~~~~~~~~~~~~~~~pG~r~p~~~~~~~~~~~~l~dl~g~~f~ll~~~  461 (547)
T PRK08132        404 LSVPAVYADSPLNTPDGDAFAGGPVPGAPAPDAPVRADGEPGWLLDLLGGGFTLLLFG  461 (547)
T ss_pred             cccCcccCCCCCCCCcccccCCCCCCCCCCCCCcccCCCCceEHHHhcCCCEEEEEec
Confidence             234567666653211    124679999999985         88999999999754

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=100.00  E-value=1.1e-46  Score=396.06  Aligned_cols=404  Identities=22%  Similarity=0.201  Sum_probs=284.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD  137 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  137 (506)
                      ..++||+||||||+||++|+.|+++|++|+|+||.+.....+++..++++++++|+++|+.+.+.+.. .+..++.+++.
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~-~~~~~~~~~~~   86 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHT-TPNHGMRFLDA   86 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhc-ccCCceEEEcC
Confidence            34689999999999999999999999999999999877777788889999999999999998887643 23345555543


Q ss_pred             CceeeeecCCcCC--CCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCe
Q 010623          138 GNRTQISYPLEKF--HSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPL  214 (506)
Q Consensus       138 ~~~~~~~~~~~~~--~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~  214 (506)
                      .......++....  ...+....++|..+++.|.+.+.+.++++++++ +|+++++++++++ +++++.+|++.+++||+
T Consensus        87 ~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~-v~~~~~~G~~~~i~ad~  165 (538)
T PRK06183         87 KGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVT-VTLTDADGQRETVRARY  165 (538)
T ss_pred             CCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEE-EEEEcCCCCEEEEEEEE
Confidence            2222222321110  011223567899999999999988778999988 4999998888654 55555578666789999


Q ss_pred             EEeecCCcccchhhccCCCCCCccceeeEEEe--cc-CCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCC-CCCC
Q 010623          215 TIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE--NC-NLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQK-VPSI  290 (506)
Q Consensus       215 vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~  290 (506)
                      ||+|||.+|.+|+++++...+..+....+.+.  .. ..........++.+++++.++|.+++..+|.+...+.. ....
T Consensus       166 vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~  245 (538)
T PRK06183        166 VVGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPHTYQYCDPARPYTSVRLPHGRRRWEFMLLPGETEEQL  245 (538)
T ss_pred             EEecCCCchhHHHHcCCeeeCCCccceEEEEEEecccCccCCCceEEEECCCCCEEEEEcCCCeEEEEEEeCCCCChhhc
Confidence            99999999999999988655444333222221  11 11122234566778888999999988877877654322 1122


Q ss_pred             -CchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHH
Q 010623          291 -SNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVI  369 (506)
Q Consensus       291 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~  369 (506)
                       +.+.+.+.+..+.   ..+...       +......+......+.+|++|||+|+|||||.++|++|||+|+||+||.+
T Consensus       246 ~~~~~~~~~l~~~~---~~~~~~-------~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~  315 (538)
T PRK06183        246 ASPENVWRLLAPWG---PTPDDA-------ELIRHAVYTFHARVADRWRSGRVLLAGDAAHLMPPFAGQGMNSGIRDAAN  315 (538)
T ss_pred             CCHHHHHHHHHhhC---CCCcce-------EEEEEEeeeEccEEhhhhccCCEEEEechhhcCCCccccchhhhHHHHHH
Confidence             2334444443321   000000       00122334445556789999999999999999999999999999999999


Q ss_pred             HHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcC------------
Q 010623          370 LRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLG------------  437 (506)
Q Consensus       370 La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g------------  437 (506)
                      |+|+|+.+..   +.+.+++|++|+++|+|++..++..+..+.+++... ++....+|+..+..+...            
T Consensus       316 La~kLa~~~~---g~~~~~~L~~Ye~eR~p~~~~~~~~s~~~~~~~~~~-~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~  391 (538)
T PRK06183        316 LAWKLAAVLR---GRAGDALLDTYEQERRPHARAMIDLAVRLGRVICPT-DRLAAALRDAVLRALNYLPPLKRYVLEMRF  391 (538)
T ss_pred             HHHHHHHHHc---CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC-CHHHHHHHHHHHHhhhcCcchhhhhhhccC
Confidence            9999987642   233568999999999999999999999999998876 888889999877654322            


Q ss_pred             ---CCCchhHHHhh-cCCCCCchhhHHHHHH----------HHHHHHHHhhccC
Q 010623          438 ---GIFSSGPVSLL-SGLNPRPLILVFHFFA----------VAIYGVGRILLPF  477 (506)
Q Consensus       438 ---~~~~~~~~~~~-~~~~~~p~~~~~h~~~----------~~l~~~~~~l~~~  477 (506)
                         ..|..+++... ....+.+|.++|+.++          -++.|.+|+|+..
T Consensus       392 ~~~~~y~~~~~~~~~~~~~~~~G~~~p~~~~~~~~~~~~~~d~~~~~~~~ll~~  445 (538)
T PRK06183        392 KPMPRLTGGAVVREGEAKHSPVGTLFPQPRVELGGGDRGLLDDVLGPGFAVLGW  445 (538)
T ss_pred             CCCCcccccccccCcccCCCCcccCcCCCeeEcCCCCcccchhccCCceEEEEe
Confidence               22322221100 1123568888888754          3477888999864

>PRK08244 hypothetical protein; Provisional

Probab=100.00  E-value=2.9e-46  Score=389.48  Aligned_cols=395  Identities=19%  Similarity=0.183  Sum_probs=275.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      ++||+||||||+||++|+.|+++|++|+|+||.+.+...+++..++++++++|+++|+++.+.+.. .+.....++....
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~-~~~~~~~~~~~~~   80 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKG-RKLPSGHFAGLDT   80 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhc-ccccceEEecccc
Confidence            589999999999999999999999999999999887777788899999999999999998887643 2222333322111


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                        ...+.... ...+..+.++|..+++.|.+.+.+. +++++++ +++++.++++++. +++.+.+|+ .+++||+||+|
T Consensus        81 --~~~~~~~~-~~~~~~~~i~q~~le~~L~~~~~~~-gv~v~~~~~v~~i~~~~~~v~-v~~~~~~g~-~~i~a~~vVgA  154 (493)
T PRK08244         81 --RLDFSALD-TSSNYTLFLPQAETEKVLEEHARSL-GVEIFRGAEVLAVRQDGDGVE-VVVRGPDGL-RTLTSSYVVGA  154 (493)
T ss_pred             --cCCcccCC-CCCCcEEEecHHHHHHHHHHHHHHc-CCeEEeCCEEEEEEEcCCeEE-EEEEeCCcc-EEEEeCEEEEC
Confidence              11111001 1123345789999999999999887 6888888 5999988877654 555555663 46889999999


Q ss_pred             cCCcccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCC----CCCCCch
Q 010623          219 DGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQK----VPSISNG  293 (506)
Q Consensus       219 dG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~----~~~~~~~  293 (506)
                      ||.+|.+|++++++..+....+.++... ....+.+.....++.++++++++|++++..++.+..+...    ....+.+
T Consensus       155 DG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (493)
T PRK08244        155 DGAGSIVRKQAGIAFPGTDATFTAMLGDVVLKDPPPSSVLSLCTREGGVMIVPLSGGIYRVLIIDPERPQVPKDEPVTLE  234 (493)
T ss_pred             CCCChHHHHhcCCCccCCCcceEEEEEEEEecCCCCcceeEEEeCCceEEEEECCCCeEEEEEEcCCcccccCCCCCCHH
Confidence            9999999999998766555444444322 1122222234455677889999999988877766544221    1123445


Q ss_pred             HHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHHHH
Q 010623          294 EMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNL  373 (506)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~  373 (506)
                      ++.+.+.+.....+.         .........++.....+++|.+|||+|+|||||.++|++|||+|+||+||.+|+|+
T Consensus       235 ~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~  305 (493)
T PRK08244        235 ELKTSLIRICGTDFG---------LNDPVWMSRFGNATRQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWK  305 (493)
T ss_pred             HHHHHHHHhhCCCCC---------cCCeeEEEecccceeeHhhhccCcEEEeecceeccCCccccccccchhhHHHHHHH
Confidence            555555544322111         00112334566666778899999999999999999999999999999999999999


Q ss_pred             hhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHh--------------cCCC
Q 010623          374 LRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLS--------------LGGI  439 (506)
Q Consensus       374 L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~--------------~g~~  439 (506)
                      |+.+.+   +...+.+|++|+++|+|++..++..+..+.+++..  ++....+|+....++.              .+..
T Consensus       306 La~~l~---g~~~~~lL~~Ye~eR~~~~~~~~~~~~~~~~~~~~--~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (493)
T PRK08244        306 LAAAIK---GWAPDWLLDSYHAERHPVGTALLRNTEVQTKLFDF--TRPGLALRSMLSDLLGFPEVNRYLAGQISALDVH  380 (493)
T ss_pred             HHHHHc---CCCCchhhhhhHHHHHHHHHHHHHHhHHHHHHhcC--CchhHHHHHHHHHHhcchHHHHHHHHHHhcCCcc
Confidence            997652   23346799999999999999999888888888754  3455566665433322              2223


Q ss_pred             CchhHHHhhcCCCCCchhhHHHHHH----------HHHHHHH-HhhccCC
Q 010623          440 FSSGPVSLLSGLNPRPLILVFHFFA----------VAIYGVG-RILLPFP  478 (506)
Q Consensus       440 ~~~~~~~~~~~~~~~p~~~~~h~~~----------~~l~~~~-~~l~~~~  478 (506)
                      |..++.   ....+.||.++||.|+          .|+++.+ |+|+.+.
T Consensus       381 Y~~~~~---~~~~~~~G~r~p~~~~~~~~~~~~~l~~~~~~~~~~ll~~~  427 (493)
T PRK08244        381 YEPDAE---MPPHPLNGKRLPDLELTLSDGESERLYSLLHKGTFLLLSFG  427 (493)
T ss_pred             cCCCCc---cCCCCCCCCCCCCcceecCCCCceeHHHhhcCCeEEEEEec
Confidence            321110   0123578999999875          6777654 8888643

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=100.00  E-value=1.5e-45  Score=377.83  Aligned_cols=371  Identities=16%  Similarity=0.190  Sum_probs=268.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHH----CCCcEEEEecCCCCCC------------cccccccccchHHHHHHhCchhHHhhc
Q 010623           61 ADVIVVGAGVAGAALANTLAK----DGRRVHVIERDLSEPD------------RIVGELLQPGGYLKLIELGLEDCVEQI  124 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~----~G~~v~vvE~~~~~~~------------~~~g~~l~~~~~~~l~~~g~~~~~~~~  124 (506)
                      +||+||||||+|+++|+.|++    +|++|+|+||++.+..            ..++..++++++++|+++|+++.+.+.
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~   80 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD   80 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence            699999999999999999999    8999999999643321            245778999999999999999988765


Q ss_pred             ccceecceEEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCC--CEEEEece-EEEEEee----CCeEEE
Q 010623          125 DAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLP--NVRLEQGT-VTSLLEE----KGTIKG  197 (506)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~--~v~i~~~~-v~~~~~~----~~~v~~  197 (506)
                      ...+...+.+++........++... ...+.++.++|..+.+.|.+.+.+.+  ++++++++ |++++.+    ++...+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~  159 (437)
T TIGR01989        81 RIQPFGRMQVWDGCSLALIRFDRDN-GKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNW  159 (437)
T ss_pred             cCCceeeEEEecCCCCceEEeecCC-CCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCc
Confidence            4445555666654332233333222 23345678999999999999998886  68998885 9998742    111124


Q ss_pred             EEEEeCCccEEEEEcCeEEeecCCcccchhhccCCCCCCccceeeEEEe-ccC-CCCCCeeEEEecCCCcEEEEecCCCe
Q 010623          198 VQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCN-LPFENHGHVVLADPSPILFYPISSNE  275 (506)
Q Consensus       198 v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~  275 (506)
                      +++...+|+  +++||+||+|||.+|.+|+.+++...+..+...+++.. ..+ .+..+..+.++.+++++.++|+.++.
T Consensus       160 v~v~~~~g~--~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~~v~~~~~~~~~~~~~~f~~~g~~~~lPl~~~~  237 (437)
T TIGR01989       160 VHITLSDGQ--VLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLKLEEATENDVAWQRFLPTGPIALLPLPDNN  237 (437)
T ss_pred             eEEEEcCCC--EEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEEEEEcccCCCCCeEEEEECCCCCEEEeECCCCC
Confidence            666677886  47799999999999999999999877665555444432 222 23344556667788899999999888


Q ss_pred             EEEEEEecCCCC---CCCCchHHHHHHHHhcC---CCCCh---------hh-----------------hHHHHhhhcCCC
Q 010623          276 VRCLVDIPGQKV---PSISNGEMANYLKTVVA---PQIPR---------EI-----------------FHSFVAAVDGGN  323 (506)
Q Consensus       276 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~---------~~-----------------~~~~~~~~~~~~  323 (506)
                      .+++|..+....   ...+.+++.+.+.+.+.   ...+.         .+                 ...+ ..+....
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  316 (437)
T TIGR01989       238 STLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYAMEKLNEDIGFRTEGSKSCFQVPPRV-IGVVDKS  316 (437)
T ss_pred             EEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccCchh-heeeccc
Confidence            888887763321   12344555555543330   00000         00                 0000 0111112


Q ss_pred             eEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHH
Q 010623          324 IKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVAST  403 (506)
Q Consensus       324 ~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~  403 (506)
                      ...+|+....+++|..+||+|+|||||.++|++|||+|+||+||.+|+|+|.+....+.....+++|++|+++|++++..
T Consensus       317 ~~~~~~~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~  396 (437)
T TIGR01989       317 RAAFPLGLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGADIGSISSLKPYERERYAKNVV  396 (437)
T ss_pred             ceeEEecccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHH
Confidence            35677777788999999999999999999999999999999999999999987643222222357999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhc
Q 010623          404 INTLAGALYQVFSASPDEARKEMRQACFDYLSL  436 (506)
Q Consensus       404 ~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~  436 (506)
                      ++..++.+.++|..+ ++....+|+..+..+..
T Consensus       397 v~~~t~~l~~l~~~~-~~~~~~~R~~~l~~~~~  428 (437)
T TIGR01989       397 LLGLVDKLHKLYATD-FPPVVALRTFGLNLTNY  428 (437)
T ss_pred             HHHHHHHHHHHHcCC-ccHHHHHHHHHHHHhhh
Confidence            999999999999986 78888999998877654

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK06184 hypothetical protein; Provisional

Probab=100.00  E-value=8.3e-46  Score=386.66  Aligned_cols=395  Identities=20%  Similarity=0.178  Sum_probs=270.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      ++||+||||||+||++|+.|+++|++|+|+||.+.+...+++..++++++++|+++|+.+.+.+... .......+..+.
T Consensus         3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~-~~~~~~~~~~~~   81 (502)
T PRK06184          3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGG-LYPPMRIYRDDG   81 (502)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCc-cccceeEEeCCc
Confidence            5899999999999999999999999999999998877778888999999999999999988876432 233344454332


Q ss_pred             ee-eeecCC--cC--CCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcC
Q 010623          140 RT-QISYPL--EK--FHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAP  213 (506)
Q Consensus       140 ~~-~~~~~~--~~--~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~  213 (506)
                      .. ...+..  ..  ....+....++|..+++.|.+.+.+. +++++++ ++++++++++.++ +++...++. .+++||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~-gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~~-~~i~a~  158 (502)
T PRK06184         82 SVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAEL-GHRVEFGCELVGFEQDADGVT-ARVAGPAGE-ETVRAR  158 (502)
T ss_pred             eEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHC-CCEEEeCcEEEEEEEcCCcEE-EEEEeCCCe-EEEEeC
Confidence            21 111110  00  01112345788999999999999887 6888888 5999998877654 444332332 368899


Q ss_pred             eEEeecCCcccchhhccCCCCCCccce-eeEEEe-ccCCCCCCeeEEEecCC-CcEEEEecCCCe-EEEEEEecCCCCCC
Q 010623          214 LTIVCDGCFSNLRRSLCNPKVDVPSCF-VGLVLE-NCNLPFENHGHVVLADP-SPILFYPISSNE-VRCLVDIPGQKVPS  289 (506)
Q Consensus       214 ~vV~AdG~~S~vR~~l~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~-~~~~~~~~~~~~~~  289 (506)
                      +||+|||++|.+|+++++...+..... ..++.. ............+..+. +.+.++|+.++. +++.+..+.+..+.
T Consensus       159 ~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  238 (502)
T PRK06184        159 YLVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTGLDRDAWHQWPDGDMGMIALCPLPGTDLFQIQAPLPPGGEPD  238 (502)
T ss_pred             EEEECCCCchHHHHhCCCCcccCcCCCceEEEEEEEeecCCCcceEEccCCCCcEEEEEEccCCCeEEEEEEcCCCccCC
Confidence            999999999999999998776554332 233221 11111122233344444 677888987654 33444444333334


Q ss_pred             CCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHH
Q 010623          290 ISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVI  369 (506)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~  369 (506)
                      .+.+++.+.++......   .+.     .........|+.....+++|..|||+|+|||||.++|++|||||+||+||.+
T Consensus       239 ~~~~~~~~~l~~~~~~~---~~~-----~~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~  310 (502)
T PRK06184        239 LSADGLTALLAERTGRT---DIR-----LHSVTWASAFRMNARLADRYRVGRVFLAGDAAHVHPPAGGQGLNTSVQDAYN  310 (502)
T ss_pred             CCHHHHHHHHHHhcCCC---Ccc-----eeeeeeeeccccceeEhhhhcCCcEEEeccccccCCCcccccccchHHHHHH
Confidence            45666666666643311   110     0011223455666666789999999999999999999999999999999999


Q ss_pred             HHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCchhHHHhhc
Q 010623          370 LRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLS  449 (506)
Q Consensus       370 La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~  449 (506)
                      |+|+|+.+.+.    +.+++|++|+++|+|++..++..+..+.+.+... +.    .+..  .....+..|..+++....
T Consensus       311 LawkLa~vl~g----~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~~~-~~----~~~~--~~~~~~~~y~~~~~~~~~  379 (502)
T PRK06184        311 LGWKLAAVLAG----APEALLDTYEEERRPVAAAVLGLSTELLDAIKRG-DM----RRGR--DVQQLDLGYRGSSLAVDG  379 (502)
T ss_pred             HHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-Hh----hccc--chhcceeecCCCcccCCC
Confidence            99999976532    3468999999999999999999988877775432 11    1111  122345556666554221


Q ss_pred             ---CCCCCchhhHHHHHH----------HHHHH-HHHhhccC
Q 010623          450 ---GLNPRPLILVFHFFA----------VAIYG-VGRILLPF  477 (506)
Q Consensus       450 ---~~~~~p~~~~~h~~~----------~~l~~-~~~~l~~~  477 (506)
                         ...++||.|+||.|+          .|+++ .+|+|+..
T Consensus       380 ~~~~~~~~~G~r~p~~~~~~~~~~~~~l~d~~~~~~~~ll~~  421 (502)
T PRK06184        380 PERTGGLRAGDRAPDAPLLGAAGQPTRLFDLFRGPHWTLLAF  421 (502)
T ss_pred             cccCCCCCCcCCCCCchhccCCCceeeHHHhhCCCcEEEEEe
Confidence               124679999999986          57775 57988863

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=100.00  E-value=2e-45  Score=374.67  Aligned_cols=377  Identities=20%  Similarity=0.267  Sum_probs=264.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC--------CCcccccccccchHHHHHHhCchhHHhhcccceecc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE--------PDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFG  131 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~--------~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~  131 (506)
                      ++||+||||||+|+++|+.|+++|++|+|+|+.+..        ....++..++++++++|+++|+++.+.+....+...
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~   81 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE   81 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence            489999999999999999999999999999998621        123456679999999999999998886543344455


Q ss_pred             eEEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEE
Q 010623          132 YALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTA  210 (506)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i  210 (506)
                      +.+++........+..........++.+++..+.+.|.+.+.+. +++++.+ +++++++++++   +++...+|+  ++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~-gv~v~~~~~v~~i~~~~~~---v~v~~~~g~--~~  155 (405)
T PRK05714         82 MQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDS-DIGLLANARLEQMRRSGDD---WLLTLADGR--QL  155 (405)
T ss_pred             EEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcC-CCEEEcCCEEEEEEEcCCe---EEEEECCCC--EE
Confidence            56665443333333322222233467788999999999998887 7888877 59999887774   445566775  46


Q ss_pred             EcCeEEeecCCcccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCCe----EEEEEEecCC
Q 010623          211 YAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNE----VRCLVDIPGQ  285 (506)
Q Consensus       211 ~a~~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----~~~~~~~~~~  285 (506)
                      +||+||+|||.+|.+|+++++......+...+++.. ....+.....+.++.+.+++.++|++++.    ..+.|..+.+
T Consensus       156 ~a~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~  235 (405)
T PRK05714        156 RAPLVVAADGANSAVRRLAGCATREWDYLHHAIVTSVRCSEPHRATAWQRFTDDGPLAFLPLERDGDEHWCSIVWSTTPE  235 (405)
T ss_pred             EeCEEEEecCCCchhHHhcCCCcccccCCceEEEEEEEcCCCCCCEEEEEcCCCCCeEEeeCCCCCCCCeEEEEEECCHH
Confidence            799999999999999999988655444444444332 12223333345556778899999997432    2233444322


Q ss_pred             CC---CCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHH
Q 010623          286 KV---PSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTV  362 (506)
Q Consensus       286 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~  362 (506)
                      ..   ...+.+++.+.+.+.+.+    .+    ...........|++....+.+|..+||+|+|||||.++|++|||+|+
T Consensus       236 ~~~~~~~~~~~~~~~~l~~~~~~----~~----~~~~~~~~~~~~~l~~~~~~~~~~~rv~LlGDAAH~~~P~~GQG~n~  307 (405)
T PRK05714        236 EAERLMALDDDAFCAALERAFEG----RL----GEVLSADPRLCVPLRQRHAKRYVEPGLALIGDAAHTIHPLAGQGVNL  307 (405)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHH----Hh----CCceecCCccEEecceeehhhhccCCEEEEEeccccCCCcccccccH
Confidence            11   112223333333322211    11    11112234456777777789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCch
Q 010623          363 ALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSS  442 (506)
Q Consensus       363 ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~  442 (506)
                      ||+||.+|+++|......+.....+.+|+.|+++|++++..++..++.+.++|+.+ ++....+|+..+..+..-+...+
T Consensus       308 al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~R~~~l~~~~~~~~~k~  386 (405)
T PRK05714        308 GFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRMPHNLALMAAMEGFERLFQAD-PLPLRWLRNTGLKLVDQMPEAKA  386 (405)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHHhhCHHHHH
Confidence            99999999999986432111122358999999999999999999999999999886 77888999999887766555544


Q ss_pred             hHHHhhcCC
Q 010623          443 GPVSLLSGL  451 (506)
Q Consensus       443 ~~~~~~~~~  451 (506)
                      -.+....|.
T Consensus       387 ~~~~~~~g~  395 (405)
T PRK05714        387 LFVRQALGL  395 (405)
T ss_pred             HHHHHHhcC
Confidence            444444443

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=100.00  E-value=1.3e-44  Score=364.15  Aligned_cols=351  Identities=17%  Similarity=0.260  Sum_probs=256.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC----CcccccccccchHHHHHHhCchhHHhhcccceecceEEEE
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP----DRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFK  136 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~----~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  136 (506)
                      +||+||||||+|+++|+.|++.|++|+|+|+.+...    ...++..++++++++|+++|+++.+... ..+...+.+++
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~-~~~~~~~~~~~   80 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKF-VAEMQDIYVVD   80 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhh-cCCCcEEEEEE
Confidence            699999999999999999999999999999974322    2357788999999999999999888654 23455566665


Q ss_pred             CCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeE
Q 010623          137 DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLT  215 (506)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~v  215 (506)
                      ........++..  .....++.++|.+|.+.|.+.+.+.++++++.+ +++++.+++++   +++...++   +++||+|
T Consensus        81 ~~g~~~~~~~~~--~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~v~~~~~---~~~adlv  152 (374)
T PRK06617         81 NKASEILDLRND--ADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY---SIIKFDDK---QIKCNLL  152 (374)
T ss_pred             CCCceEEEecCC--CCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe---EEEEEcCC---EEeeCEE
Confidence            433323333321  223457889999999999999999877888877 49999888774   34445554   4779999


Q ss_pred             EeecCCcccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCCe-EEEEEEecCCCC---CCC
Q 010623          216 IVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNE-VRCLVDIPGQKV---PSI  290 (506)
Q Consensus       216 V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~---~~~  290 (506)
                      |+|||.+|.+|+.++++.....+ ..++.+. ..+.++.+....++...++++++|+.++. ..++|..+.+..   ...
T Consensus       153 IgADG~~S~vR~~l~~~~~~~~y-~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~lPl~~~~~~~~vw~~~~~~~~~~~~~  231 (374)
T PRK06617        153 IICDGANSKVRSHYFANEIEKPY-QTALTFNIKHEKPHENCAMEHFLPLGPFALLPLKDQYASSVIWSTSSDQAALIVNL  231 (374)
T ss_pred             EEeCCCCchhHHhcCCCcccccC-CeEEEEEEeccCCCCCEEEEEecCCCCEEEeECCCCCeEEEEEeCCHHHHHHHHcC
Confidence            99999999999999876543333 3333332 22334444445566777889999998875 456666542211   111


Q ss_pred             CchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHH
Q 010623          291 SNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVIL  370 (506)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~L  370 (506)
                      +.+.+.+.+.....+    .+.    ..........+|+....+.+|..|||+|+|||||.++|++|||+|+||+||.+|
T Consensus       232 ~~~~~~~~~~~~~~~----~~~----~i~~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gl~Da~~L  303 (374)
T PRK06617        232 PVEEVRFLTQRNAGN----SLG----KITIDSEISSFPLKARIANRYFHNRIVLIADTAHTVHPLAGQGLNQGIKDIEIL  303 (374)
T ss_pred             CHHHHHHHHHHhhch----hcC----ceeeccceeEEEeeeeeccceecCCEEEEEcccccCCCCccccHHHHHHHHHHH
Confidence            222333333322111    111    111122466788877788999999999999999999999999999999999999


Q ss_pred             HHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCC
Q 010623          371 RNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIF  440 (506)
Q Consensus       371 a~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~  440 (506)
                      ++.|..          ..+|+.|+++|+++...++..++.+.++|... .+....+|+..+..+..-+..
T Consensus       304 a~~L~~----------~~~L~~Ye~~R~~~~~~~~~~t~~l~~~f~~~-~~~~~~~R~~~l~~~~~~~~~  362 (374)
T PRK06617        304 SMIVSN----------NGTLQEYQKLRQEDNFIMYKLTDELNNIFSNY-SKNLRCLRQIGFKVINNFKPI  362 (374)
T ss_pred             HHHHcC----------cchHHHHHHHHhHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHhcCHHH
Confidence            999842          15899999999999999999999999999976 778889999988877654433

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=100.00  E-value=2.3e-44  Score=363.79  Aligned_cols=362  Identities=19%  Similarity=0.198  Sum_probs=258.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC------cccccccccchHHHHHHhCchhHHhhcccceecceE
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD------RIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYA  133 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~------~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  133 (506)
                      .+||+||||||+|+++|+.|++.|++|+|+|+.+....      ..+...++++++++|+++|+++.+.+....+...+.
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~   82 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLE   82 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEE
Confidence            48999999999999999999999999999998752211      113347899999999999999888654333444444


Q ss_pred             EEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEc
Q 010623          134 LFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYA  212 (506)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a  212 (506)
                      .+..... ...++.........++.+.+..+...|.+.+.+.++++++.++ ++++++++++   ++++.++|+  +++|
T Consensus        83 ~~~~~~~-~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~---~~v~~~~g~--~~~~  156 (384)
T PRK08849         83 TWEHPEC-RTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG---NRVTLESGA--EIEA  156 (384)
T ss_pred             EEeCCCc-eEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe---EEEEECCCC--EEEe
Confidence            5543221 1223322222233457778888999999998888789999885 9999887774   445567776  4679


Q ss_pred             CeEEeecCCcccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCC---CC
Q 010623          213 PLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQK---VP  288 (506)
Q Consensus       213 ~~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~  288 (506)
                      |+||+|||.+|.+|+++++......+...++++. ..+.+..+..+.++.+.++..++|+.++..+++|..++..   ..
T Consensus       157 ~lvIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~pl~~~~~~~~~~~~~~~~~~~~  236 (384)
T PRK08849        157 KWVIGADGANSQVRQLAGIGITAWDYRQHCMLINVETEQPQQDITWQQFTPSGPRSFLPLCGNQGSLVWYDSPKRIKQLS  236 (384)
T ss_pred             eEEEEecCCCchhHHhcCCCceeccCCCeEEEEEEEcCCCCCCEEEEEeCCCCCEEEeEcCCCceEEEEECCHHHHHHHH
Confidence            9999999999999999988655444433333332 2333444455556666677777899877655555443211   11


Q ss_pred             CCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHH
Q 010623          289 SISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIV  368 (506)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~  368 (506)
                      ..+.++..+.+.+.+.+.+. .        +.......|++....+.+|..|||+|+|||||.|+|++|||+|+||+||.
T Consensus       237 ~~~~~~~~~~l~~~~~~~~~-~--------~~~~~~~~~~l~~~~~~~~~~grv~LlGDAAH~~~P~~GQG~n~al~Da~  307 (384)
T PRK08849        237 AMNPEQLRSEILRHFPAELG-E--------IKVLQHGSFPLTRRHAQQYVKNNCVLLGDAAHTINPLAGQGVNLGFKDVD  307 (384)
T ss_pred             cCCHHHHHHHHHHHhhhhhC-c--------EEeccceEeeccccccchhccCCEEEEEcccccCCCCccchHhHHHHHHH
Confidence            22344445544443221111 0        11223456777777789999999999999999999999999999999999


Q ss_pred             HHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCch
Q 010623          369 ILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSS  442 (506)
Q Consensus       369 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~  442 (506)
                      +|++.|...     +...+++|+.|+++|+++...++..++.+.++|+.. ++....+|+..+..+...+....
T Consensus       308 ~L~~~l~~~-----~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~R~~~l~~~~~~~~~k~  375 (384)
T PRK08849        308 VLLAETEKQ-----GVLNDASFARYERRRRPDNLLMQTGMDLFYKTFSNS-LTPLKFVRNAALKLAENSGPLKT  375 (384)
T ss_pred             HHHHHHHhc-----CCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHhccHHHHH
Confidence            999998742     123468999999999999999999999999999886 67788899998887765554443

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=100.00  E-value=3.3e-44  Score=367.24  Aligned_cols=384  Identities=18%  Similarity=0.193  Sum_probs=260.5

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC--cccccccccchHHHHHHhCchhHHhhcccceecceE
Q 010623           56 ECPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD--RIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYA  133 (506)
Q Consensus        56 ~~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~--~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  133 (506)
                      .++.++||+||||||+|+++|+.|+++|++|+|+||.+....  .+.+..++++++++|+++|+++.+.... .+.....
T Consensus        14 ~~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~-~~~~~~~   92 (415)
T PRK07364         14 TRSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQI-GKFRQIR   92 (415)
T ss_pred             CCccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhc-CCccEEE
Confidence            344569999999999999999999999999999999976543  3456679999999999999998876532 2333444


Q ss_pred             EEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEc
Q 010623          134 LFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYA  212 (506)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a  212 (506)
                      +++........+..........++...+..+.+.|.+.+.+.++++++++ ++++++++++.+. |++.+ +++..+++|
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~-v~~~~-~~~~~~i~a  170 (415)
T PRK07364         93 LSDADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAAT-VTLEI-EGKQQTLQS  170 (415)
T ss_pred             EEeCCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeE-EEEcc-CCcceEEee
Confidence            44433222223332222222234445556788999999988778999877 5999988777543 44433 333346889


Q ss_pred             CeEEeecCCcccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCC---CC
Q 010623          213 PLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQK---VP  288 (506)
Q Consensus       213 ~~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~  288 (506)
                      |+||+|||.+|.+|+.+++...+......++.+. ..+.+........+.+.++++++|++++..++++..+.+.   ..
T Consensus       171 dlvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~  250 (415)
T PRK07364        171 KLVVAADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEAPHNDIAYERFWPSGPFAILPLPGNRCQIVWTAPHAQAKALL  250 (415)
T ss_pred             eEEEEeCCCCchhHHHhCCCceeecCCCEEEEEEEEccCCCCCEEEEEecCCCCeEEeECCCCCEEEEEECCHHHHHHHH
Confidence            9999999999999999987654433222222211 1222222323333445678899999988877777654321   11


Q ss_pred             CCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHH
Q 010623          289 SISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIV  368 (506)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~  368 (506)
                      ..+.++..+.+.+.+.+... .+.       .......++.....+.+|..+|++|+|||||.++|++|||+|+||+||.
T Consensus       251 ~~~~~~~~~~l~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~DA~  322 (415)
T PRK07364        251 ALPEAEFLAELQQRYGDQLG-KLE-------LLGDRFLFPVQLMQSDRYVQHRLALVGDAAHCCHPVGGQGLNLGIRDAA  322 (415)
T ss_pred             CCCHHHHHHHHHHHhhhhhc-Cce-------ecCCCceecchhhhhhhhcCCcEEEEecccccCCCcccccHhHHHHHHH
Confidence            22334444444443322111 110       0123345666666678999999999999999999999999999999999


Q ss_pred             HHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCchhHHHhh
Q 010623          369 ILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLL  448 (506)
Q Consensus       369 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~  448 (506)
                      .|+++|......+......++|+.|+++|++++..++..++.+.+++..+ ++....+|+..+..+..-+......+..+
T Consensus       323 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~  401 (415)
T PRK07364        323 ALAQVLQTAHQRGEDIGSLAVLKRYERWRKRENWLILGFTDLLDRLFSNQ-WWPLVVVRRLGLWLLRHVPPLKRLALRLM  401 (415)
T ss_pred             HHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence            99999986431111111247999999999999999999999999999876 77888899988877654433333333334


Q ss_pred             cCC
Q 010623          449 SGL  451 (506)
Q Consensus       449 ~~~  451 (506)
                      .|+
T Consensus       402 ~g~  404 (415)
T PRK07364        402 TGL  404 (415)
T ss_pred             cCC
Confidence            443

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=100.00  E-value=8.3e-45  Score=368.51  Aligned_cols=366  Identities=20%  Similarity=0.262  Sum_probs=263.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCc-----ccccccccchHHHHHHhCchhHHhhcccceecce
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDR-----IVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGY  132 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~-----~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~  132 (506)
                      ...+||+||||||+|+++|+.|+++|++|+|+||.+.+...     .+...++++++++|+++|+++.+.+....+....
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~   83 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRM   83 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEE
Confidence            34689999999999999999999999999999998654322     2334688999999999999998876433444555


Q ss_pred             EEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEE
Q 010623          133 ALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAY  211 (506)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~  211 (506)
                      .++..+......++.........++.+++..+.+.|.+.+.+. +++++.+ +|+++..++++   ++++.++|+  +++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~-gv~i~~~~~v~~i~~~~~~---v~v~~~~g~--~~~  157 (392)
T PRK08773         84 RVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAA-GVQLHCPARVVALEQDADR---VRLRLDDGR--RLE  157 (392)
T ss_pred             EEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhC-CCEEEcCCeEEEEEecCCe---EEEEECCCC--EEE
Confidence            5665433222334333333344567899999999999999887 7888877 59999887774   445566776  467


Q ss_pred             cCeEEeecCCcccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCCCC--
Q 010623          212 APLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVP--  288 (506)
Q Consensus       212 a~~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~--  288 (506)
                      ||+||+|||.+|.+|+.++++.....+...+++.. ..+.+.....+..+.+++++.++|.+++..+++|.++.+..+  
T Consensus       158 a~~vV~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~lP~~~~~~~~~w~~~~~~~~~~  237 (392)
T PRK08773        158 AALAIAADGAASTLRELAGLPVSRHDYAQRGVVAFVDTEHPHQATAWQRFLPTGPLALLPFADGRSSIVWTLPDAEAERV  237 (392)
T ss_pred             eCEEEEecCCCchHHHhhcCCceEEEeccEEEEEEEEccCCCCCEEEEEeCCCCcEEEEECCCCceEEEEECCHHHHHHH
Confidence            99999999999999999987665444444454432 233344444555677788899999998888888877643211  


Q ss_pred             -CCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHH
Q 010623          289 -SISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDI  367 (506)
Q Consensus       289 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da  367 (506)
                       ..+.++..+.+.+.+.+.+. .+.       .......+++....+.+|..+||+|+|||||.++|++|||+|+||+||
T Consensus       238 ~~~~~~~~~~~l~~~~~~~~~-~~~-------~~~~~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da  309 (392)
T PRK08773        238 LALDEAAFSRELTQAFAARLG-EVR-------VASPRTAFPLRRQLVQQYVSGRVLTLGDAAHVVHPLAGQGVNLGLRDV  309 (392)
T ss_pred             HcCCHHHHHHHHHHHHhhhhc-CeE-------ecCCccEeechhhhhhhhcCCcEEEEechhhcCCCchhchhhhhHHHH
Confidence             12223333333332221111 000       011223566666678999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCC
Q 010623          368 VILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGG  438 (506)
Q Consensus       368 ~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~  438 (506)
                      .+|+++|.+....+.+.....+|++|+++|+++...+....+.+.++|... .+....+|+..+..+..-+
T Consensus       310 ~~La~~L~~~~~~~~~~~~~~~l~~y~~~R~~~~~~~~~~~~~l~~~f~~~-~~~~~~~r~~~l~~~~~~~  379 (392)
T PRK08773        310 AALQQLVRQAHARRADWAAPHRLQRWARTRRSDNTVAAYGFDAINRVFSND-EMHLTLLRGSVLGLAGKLP  379 (392)
T ss_pred             HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHhhCH
Confidence            999999987532222233457999999999999888887888999999987 8888999999887766543

>PRK06185 hypothetical protein; Provisional

Probab=100.00  E-value=6.7e-44  Score=363.95  Aligned_cols=379  Identities=20%  Similarity=0.196  Sum_probs=272.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG  138 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (506)
                      .++||+||||||+|+++|+.|+++|++|+|+|+++......++..+++.+.++|+++|+++.+.+....+...+.++..+
T Consensus         5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~   84 (407)
T PRK06185          5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGG   84 (407)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECC
Confidence            46999999999999999999999999999999987554455678899999999999999988876444455566666555


Q ss_pred             cee-eeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623          139 NRT-QISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI  216 (506)
Q Consensus       139 ~~~-~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV  216 (506)
                      ... ...+..... ..+.++.+++..+.+.|.+.+.+.++++++.+ +++++..+++++.+|.+...+|+ .+++||+||
T Consensus        85 ~~~~~~~~~~~~~-~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~-~~i~a~~vI  162 (407)
T PRK06185         85 RTVTLADFSRLPT-PYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGP-GEIRADLVV  162 (407)
T ss_pred             eEEEecchhhcCC-CCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCc-EEEEeCEEE
Confidence            322 222221111 12345678899999999999988778999887 59999988888777777666664 457899999


Q ss_pred             eecCCcccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCCCCCCCchHH
Q 010623          217 VCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEM  295 (506)
Q Consensus       217 ~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  295 (506)
                      +|||.+|.+|+.++++.....+......+. ....+.++....++.++++++++|.. +..++.+..+.+..........
T Consensus       163 ~AdG~~S~vr~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~llP~~-~~~~i~~~~~~~~~~~~~~~~~  241 (407)
T PRK06185        163 GADGRHSRVRALAGLEVREFGAPMDVLWFRLPREPDDPESLMGRFGPGQGLIMIDRG-DYWQCGYVIPKGGYAALRAAGL  241 (407)
T ss_pred             ECCCCchHHHHHcCCCccccCCCceeEEEecCCCCCCCcccceEecCCcEEEEEcCC-CeEEEEEEecCCCchhhhhhhH
Confidence            999999999999988665444332222222 11111222344567788899999997 6677777776544332222222


Q ss_pred             HHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHHHHhh
Q 010623          296 ANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLR  375 (506)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~  375 (506)
                      .++.+. +...++ .+.+.+...........+++....+.+|..+|++|+|||||.++|++|||+|+||+||..|++.|.
T Consensus       242 ~~~~~~-~~~~~p-~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~  319 (407)
T PRK06185        242 EAFRER-VAELAP-ELADRVAELKSWDDVKLLDVRVDRLRRWHRPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILA  319 (407)
T ss_pred             HHHHHH-HHHhCc-cHHHHHhhcCCccccEEEEEeccccccccCCCeEEEeccccccCcccccchhHHHHHHHHHHHHHH
Confidence            222222 111111 222222222223445667777777889999999999999999999999999999999999999998


Q ss_pred             hcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCc--hhHHHHHHHHHHHHhcCCCCchhHH
Q 010623          376 HLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPD--EARKEMRQACFDYLSLGGIFSSGPV  445 (506)
Q Consensus       376 ~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~--~~~~~~r~~~~~~~~~g~~~~~~~~  445 (506)
                      .....++  ..++.|+.|+++|++....++..++.+.++|..+ .  +....+|+..+..+..-+...+..+
T Consensus       320 ~~~~~~~--~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~R~~~l~~~~~~~~~k~~~~  388 (407)
T PRK06185        320 EPLRRGR--VSDRDLAAVQRRREFPTRVTQALQRRIQRRLLAP-ALAGRGPLGPPLLLRLLNRLPWLRRLPA  388 (407)
T ss_pred             HHhccCC--ccHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccc-cccCccccCCchHHHHHHhChhHHHhhH
Confidence            7643221  2348999999999999999999999999999876 5  7788889988887776654443333

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=100.00  E-value=9.9e-44  Score=376.42  Aligned_cols=350  Identities=18%  Similarity=0.203  Sum_probs=245.6

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEE
Q 010623           57 CPFDADVIVVGAGVAGAALANTLAKD-GRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALF  135 (506)
Q Consensus        57 ~~~~~dVvIVGgG~aGl~~A~~La~~-G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~  135 (506)
                      ++.++||+||||||+||++|+.|+++ |++|+|+||.+.....+++.+++++++++|+++|+++.+.+.. .......+|
T Consensus        29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g-~~~~~~~~~  107 (634)
T PRK08294         29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEA-YWINETAFW  107 (634)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhc-ccccceEEE
Confidence            45679999999999999999999995 9999999999877777788889999999999999999887643 344455556


Q ss_pred             ECCce--eee----ecC-CcCCCCCcccccccchHHHHHHHHHHHcCCC-EEEEece-EEEEEeeCCe--EEEEEEEeC-
Q 010623          136 KDGNR--TQI----SYP-LEKFHSDVAGRGFHNGRFVQRLREKAASLPN-VRLEQGT-VTSLLEEKGT--IKGVQYKTK-  203 (506)
Q Consensus       136 ~~~~~--~~~----~~~-~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~-v~i~~~~-v~~~~~~~~~--v~~v~v~~~-  203 (506)
                      ..+..  ..+    ... ............++|..+++.|.+.+.+.++ +.+++++ +++++++++.  .+.|++.+. 
T Consensus       108 ~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~  187 (634)
T PRK08294        108 KPDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTD  187 (634)
T ss_pred             cCCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECC
Confidence            53221  000    000 0000011112568899999999999988753 6777774 9999876422  123555543 


Q ss_pred             ---CccEEEEEcCeEEeecCCcccchhhccCCCCCCccceeeEEEe---ccCCCCCCeeE-EEecCCCcEEEEecCCCe-
Q 010623          204 ---AGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE---NCNLPFENHGH-VVLADPSPILFYPISSNE-  275 (506)
Q Consensus       204 ---~G~~~~i~a~~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~-  275 (506)
                         +|++.+++|||||+|||++|.||++++++..+........+..   ..+.|...... +...+++.+.++|..++. 
T Consensus       188 ~~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~~v~dv~~~~~~p~~~~~~~~~~~~~g~~~~~P~~~g~~  267 (634)
T PRK08294        188 GEHEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAWGVMDVLAVTDFPDIRLKCAIQSASEGSILLIPREGGYL  267 (634)
T ss_pred             CCCCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceEEEEEEEEccCCCCcceEEEEecCCCceEEEEECCCCeE
Confidence               4655679999999999999999999998776554333222211   23444422222 233567889999998884 


Q ss_pred             EEEEEEecC---CC---CCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCC----------CC
Q 010623          276 VRCLVDIPG---QK---VPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPY----------PT  339 (506)
Q Consensus       276 ~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~  339 (506)
                      +++++....   ..   ....+.+++.+.+++.+.+.... +.       ....+..++...+.+++|          +.
T Consensus       268 ~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~~-~~-------~v~w~s~y~i~~r~a~~f~~~~~~~~~~r~  339 (634)
T PRK08294        268 VRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTLD-VK-------EVAWWSVYEVGQRLTDRFDDVPAEEAGTRL  339 (634)
T ss_pred             EEEEEecCcCCCccccccccCCHHHHHHHHHHhcCCCCCc-ee-------EEeEEecccccceehhhccccccccccccc
Confidence            555554321   11   12345566666666644432111 10       112333455555556665          46


Q ss_pred             CcEEEEccCCCCCCCCcchhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCC
Q 010623          340 PGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSAS  418 (506)
Q Consensus       340 ~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~  418 (506)
                      |||+|+|||||.++|.+|||||+||+||.+|+|+|+.+..   +.+.+++|++|+.||+|+++.++..++.+.++|...
T Consensus       340 gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~---g~a~~~lL~tYe~ERrp~a~~li~~~~~~~~l~~~~  415 (634)
T PRK08294        340 PRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLS---GRSPPELLHTYSAERQAIAQELIDFDREWSTMMAAP  415 (634)
T ss_pred             CCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            9999999999999999999999999999999999998753   334578999999999999999999999999999765

>PRK06834 hypothetical protein; Provisional

Probab=100.00  E-value=8.9e-44  Score=367.22  Aligned_cols=390  Identities=19%  Similarity=0.207  Sum_probs=268.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC-CcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP-DRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG  138 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~-~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (506)
                      ++||+||||||+|+++|+.|+++|++|+|+||.+.+. ...++..++++++++|+++|+++.+.+.... ..... +.  
T Consensus         3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~-~~~~~-~~--   78 (488)
T PRK06834          3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQV-AQVTG-FA--   78 (488)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCc-cccce-ee--
Confidence            5899999999999999999999999999999987644 3445667999999999999999888653211 11000 10  


Q ss_pred             ceeeeecCCcCCC-CCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623          139 NRTQISYPLEKFH-SDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI  216 (506)
Q Consensus       139 ~~~~~~~~~~~~~-~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV  216 (506)
                         ...+...... ..+.++.+.+..+++.|.+.+++. +++++++ +++++++++++   +.++..+|+  +++||+||
T Consensus        79 ---~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~-gv~i~~~~~v~~v~~~~~~---v~v~~~~g~--~i~a~~vV  149 (488)
T PRK06834         79 ---ATRLDISDFPTRHNYGLALWQNHIERILAEWVGEL-GVPIYRGREVTGFAQDDTG---VDVELSDGR--TLRAQYLV  149 (488)
T ss_pred             ---eEecccccCCCCCCccccccHHHHHHHHHHHHHhC-CCEEEcCCEEEEEEEcCCe---EEEEECCCC--EEEeCEEE
Confidence               0111111111 123456788999999999999887 7888888 49999988774   445556665  57799999


Q ss_pred             eecCCcccchhhccCCCCCCccceeeEEEeccCCCCCCeeEEEecCCCcEEEEecC-CCeEEEEEEecCCC-CCCCCchH
Q 010623          217 VCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPIS-SNEVRCLVDIPGQK-VPSISNGE  294 (506)
Q Consensus       217 ~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~-~~~~~~~~  294 (506)
                      +|||.+|.+|+++++..++..+....++.. ...+.+........+.+...+.|.. ++..++.+..+... ....+.++
T Consensus       150 gADG~~S~vR~~lgi~~~g~~~~~~~~~~d-v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (488)
T PRK06834        150 GCDGGRSLVRKAAGIDFPGWDPTTSYLIAE-VEMTEEPEWGVHRDALGIHAFGRLEDEGPVRVMVTEKQVGATGEPTLDD  228 (488)
T ss_pred             EecCCCCCcHhhcCCCCCCCCcceEEEEEE-EEecCCCCcceeeCCCceEEEeccCCCCeEEEEEecCCCCCCCCCCHHH
Confidence            999999999999998877666544444332 2222211112233445666677776 55555655544221 11334455


Q ss_pred             HHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHHHHh
Q 010623          295 MANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLL  374 (506)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L  374 (506)
                      ..+.+.+.+...+..         .....+..++.....+++|+.|||+|+|||||.++|++|||||+||+||.||+|+|
T Consensus       229 ~~~~l~~~~g~~~~~---------~~~~~~~~~~~~~r~a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~nLawkL  299 (488)
T PRK06834        229 LREALIAVYGTDYGI---------HSPTWISRFTDMARQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKL  299 (488)
T ss_pred             HHHHHHHhhCCCCcc---------ccceeEEeccccceecccccCCcEEEEeeccccCCccccccccccHHHHHHHHHHH
Confidence            555555544322211         01123456777777899999999999999999999999999999999999999999


Q ss_pred             hhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCchhHHHhhcCC---
Q 010623          375 RHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGL---  451 (506)
Q Consensus       375 ~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~---  451 (506)
                      +.+..   +.+.+.+|++|++||+|++..++..+..+..++. . ++....+|+.+++++...+. .+.....++|+   
T Consensus       300 a~vl~---g~~~~~lLd~Ye~eRrp~~~~~~~~t~~~~~~~~-~-~~~~~~lR~~~~~~~~~~~~-~~~~~~~~~g~~~~  373 (488)
T PRK06834        300 AQVVK---GTSPESLLDTYHAERHPVAARVLRNTMAQVALLR-P-DDRTEALRDIVAELLGMDEP-RKRIAAMMSGLDIH  373 (488)
T ss_pred             HHHHc---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C-ChHHHHHHHHHHHHhcCcHH-HHHHHHHHhcCCcc
Confidence            98753   2345789999999999999999998888877775 3 77788899988776554322 22222222222   


Q ss_pred             ------CCCchhhHHHHHH---------HHHH-HHHHhhccCC
Q 010623          452 ------NPRPLILVFHFFA---------VAIY-GVGRILLPFP  478 (506)
Q Consensus       452 ------~~~p~~~~~h~~~---------~~l~-~~~~~l~~~~  478 (506)
                            .+.+|.++|+.++         .++. +.+|+|+...
T Consensus       374 y~~~~~~~~~G~~~p~~~~~~~~~~~~l~~~~~~~~~~ll~~~  416 (488)
T PRK06834        374 YDLGEGHPLLGRRMPDLDLVTADGPRRVFTLLHNARPVLLNLG  416 (488)
T ss_pred             cCCCCCCCCCcCCCCCcccccCCCceeHHHHhcCCeeEEEecC
Confidence                  3456778887654         3444 3447777543

>PRK07045 putative monooxygenase; Reviewed

Probab=100.00  E-value=2.3e-43  Score=357.47  Aligned_cols=359  Identities=24%  Similarity=0.312  Sum_probs=248.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG  138 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (506)
                      .++||+||||||+||++|+.|+++|++|+|+||.+.......+..++++++++|+++|+++.+.+........+.++.++
T Consensus         4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g   83 (388)
T PRK07045          4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDK   83 (388)
T ss_pred             ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCC
Confidence            35899999999999999999999999999999998776555566799999999999999998876543333444455444


Q ss_pred             ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEe
Q 010623          139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV  217 (506)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~  217 (506)
                      +.. ..++............++|..+.+.|.+.+.+.+++++++++ +++++++++++. +.++.++|+  ++++|+||+
T Consensus        84 ~~~-~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-~~v~~~~g~--~~~~~~vIg  159 (388)
T PRK07045         84 ELI-ASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTV-TSVTLSDGE--RVAPTVLVG  159 (388)
T ss_pred             cEE-EEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcE-EEEEeCCCC--EEECCEEEE
Confidence            432 222221111111123578899999999999877789999885 999988765432 345566776  467999999


Q ss_pred             ecCCcccchhhc-cCCCCCCc---cceeeEEEeccCCCCCCeeEEEecC-CCcEEEEecCCCeEEEEEEecCCCCCC---
Q 010623          218 CDGCFSNLRRSL-CNPKVDVP---SCFVGLVLENCNLPFENHGHVVLAD-PSPILFYPISSNEVRCLVDIPGQKVPS---  289 (506)
Q Consensus       218 AdG~~S~vR~~l-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~---  289 (506)
                      |||.+|.+|+++ +.+.....   ....+.+......  ++....++.+ .+..+++|.+++..++++.++.+...+   
T Consensus       160 ADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  237 (388)
T PRK07045        160 ADGARSMIRDDVLRMPAERVPYATPMAFGTIALTDSV--RECNRLYVDSNQGLAYFYPIGDQATRLVVSFPADEMQGYLA  237 (388)
T ss_pred             CCCCChHHHHHhhCCCcccCCCCcceeEEEEeccCCc--cccceEEEcCCCceEEEEEcCCCcEEEEEEeccccchhccC
Confidence            999999999974 44322211   1222332221111  2223344544 456778999888778888776543222   


Q ss_pred             -CCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHH
Q 010623          290 -ISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIV  368 (506)
Q Consensus       290 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~  368 (506)
                       .+.+++.+.+.+.+.+.    +.+.+........+..+++....+++|..|||+|+|||||.++|++|||+|+||+||.
T Consensus       238 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~  313 (388)
T PRK07045        238 DTTRTKLLARLNEFVGDE----SADAMAAIGAGTAFPLIPLGRMNLDRYHKRNVVLLGDAAHSIHPITGQGMNLAIEDAG  313 (388)
T ss_pred             CCCHHHHHHHHhhhcCcc----chHHHhccCcccccceeecCccccccccCCCEEEEEccccccCCCccccHHHHHHHHH
Confidence             22334444444433222    2211111111122333455666678999999999999999999999999999999999


Q ss_pred             HHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 010623          369 ILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQAC  430 (506)
Q Consensus       369 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~  430 (506)
                      +|+++|..+..  +....+++|+.|+++|++++..++..++.+.+.++.. .+.....|..+
T Consensus       314 ~La~~L~~~~~--~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  372 (388)
T PRK07045        314 ELGACLDLHLS--GQIALADALERFERIRRPVNEAVISYGHALATTYHDR-AALVANFRSQL  372 (388)
T ss_pred             HHHHHHHhhcC--CchhHHHHHHHHHHHhhhHHHHHHhhhHHHhhhcccc-hhHHHHHHhhh
Confidence            99999987532  2245788999999999999999999999999998875 66666666655

>PRK09126 hypothetical protein; Provisional

Probab=100.00  E-value=6.2e-44  Score=362.47  Aligned_cols=366  Identities=18%  Similarity=0.195  Sum_probs=257.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC-----CcccccccccchHHHHHHhCchhHHhhcccceecceE
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP-----DRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYA  133 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~-----~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  133 (506)
                      +++||+||||||+|+++|+.|+++|++|+|+||.+.+.     ..+.+..+++++++.|+++|+++.+......+..+..
T Consensus         2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~   81 (392)
T PRK09126          2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAK   81 (392)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEE
Confidence            36899999999999999999999999999999987532     1233456889999999999999887654433444555


Q ss_pred             EEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEc
Q 010623          134 LFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYA  212 (506)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a  212 (506)
                      +++........++.........++.+++..+.+.|.+.+.+..++++++++ |++++++++.   +.+..++|+  +++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~---~~v~~~~g~--~~~a  156 (392)
T PRK09126         82 VLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDG---AQVTLANGR--RLTA  156 (392)
T ss_pred             EEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe---EEEEEcCCC--EEEe
Confidence            554332222333322222234566788999999999988776689999885 9999877664   345556775  4679


Q ss_pred             CeEEeecCCcccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCCCC---
Q 010623          213 PLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVP---  288 (506)
Q Consensus       213 ~~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~---  288 (506)
                      |+||+|||.+|.+|+.++++..........+... ....+.......+++.++.++++|..++..++++..+.+..+   
T Consensus       157 ~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~  236 (392)
T PRK09126        157 RLLVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRHELPHHHTAWEWFGYGQTLALLPLNGHLSSLVLTLPPDQIEALL  236 (392)
T ss_pred             CEEEEeCCCCchhhHhcCCCccccccCCeEEEEEEeccCCCCCEEEEEecCCCCeEEeECCCCCEEEEEECCHHHHHHHH
Confidence            9999999999999999987543222222112111 122233334456677777899999998887887766543211   


Q ss_pred             CCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHH
Q 010623          289 SISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIV  368 (506)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~  368 (506)
                      ..+.+++.+.+.+.+.+.+.        ..........++.....+++|..+||+|+|||||.++|++|||+|+||+||.
T Consensus       237 ~~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~ai~da~  308 (392)
T PRK09126        237 ALDPEAFAAEVTARFKGRLG--------AMRLVSSRHAYPLVAVYAHRFVAKRFALIGDAAVGMHPVTAHGFNLGLKGQD  308 (392)
T ss_pred             cCCHHHHHHHHHHHHhhhcc--------CeEEcCCCcEeechHHHHHHHhhcceEEEehhhhcCCCcccchhhhhHHHHH
Confidence            12233333333222111110        0001123445666656678899999999999999999999999999999999


Q ss_pred             HHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCC
Q 010623          369 ILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGG  438 (506)
Q Consensus       369 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~  438 (506)
                      .|+++|..+...+.+...+++|+.|+++|++++..++..++.+.+++..+ ++....+|+.++..+..-+
T Consensus       309 ~la~~L~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~  377 (392)
T PRK09126        309 ILARLILAAARRGQDIGAASLLERYERKHRLATRPLYHATNAIAALYTDD-RPPARLLRRAVLRAANRFP  377 (392)
T ss_pred             HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHHhhCh
Confidence            99999987642112223468999999999999999999999999999876 7788899999988765443

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=100.00  E-value=1.9e-43  Score=358.33  Aligned_cols=361  Identities=18%  Similarity=0.210  Sum_probs=261.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .+||+||||||+|+++|+.|+++|++|+|+||.+.... .++..+.+++.++|+++|+++.+... ..+.....+++.+.
T Consensus         7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~-~r~~~l~~~s~~~l~~lgl~~~~~~~-~~~~~~~~~~~~~g   84 (388)
T PRK07494          7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYAD-LRTTALLGPSIRFLERLGLWARLAPH-AAPLQSMRIVDATG   84 (388)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCC-cchhhCcHHHHHHHHHhCchhhhHhh-cceeeEEEEEeCCC
Confidence            58999999999999999999999999999999875432 45566888899999999999888653 33455566665432


Q ss_pred             eee----eecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeE
Q 010623          140 RTQ----ISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLT  215 (506)
Q Consensus       140 ~~~----~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~v  215 (506)
                      ...    ..+........+.++.+++..+.+.|.+.+.+.+++.....+|+++++++++   ++++.++|+  +++||+|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~---~~v~~~~g~--~~~a~~v  159 (388)
T PRK07494         85 RLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPREDE---VTVTLADGT--TLSARLV  159 (388)
T ss_pred             CCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCe---EEEEECCCC--EEEEeEE
Confidence            111    1222222223445678999999999999999887777443469999887774   445566775  4679999


Q ss_pred             EeecCCcccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCC---CCCCC
Q 010623          216 IVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQK---VPSIS  291 (506)
Q Consensus       216 V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~~~  291 (506)
                      |+|||.+|.+|+.++++.....+...++... ..+.+.......++.+.+++.++|++++..+++|..+.+.   ....+
T Consensus       160 I~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~~Pl~~~~~~~v~~~~~~~~~~~~~~~  239 (388)
T PRK07494        160 VGADGRNSPVREAAGIGVRTWSYPQKALVLNFTHSRPHQNVSTEFHTEGGPFTQVPLPGRRSSLVWVVRPAEAERLLALS  239 (388)
T ss_pred             EEecCCCchhHHhcCCCceecCCCCEEEEEEEeccCCCCCEEEEEeCCCCcEEEEECCCCcEEEEEECCHHHHHHHHcCC
Confidence            9999999999999988754444333444332 2334444444556677888999999887777777654321   11223


Q ss_pred             chHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHH
Q 010623          292 NGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILR  371 (506)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La  371 (506)
                      .+++.+.+.+.+.+.+        ...........||+....+.+|..+||+|+|||||.++|++|||+|+||+||.+|+
T Consensus       240 ~~~~~~~~~~~~~~~l--------~~~~~~~~~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La  311 (388)
T PRK07494        240 DAALSAAIEERMQSML--------GKLTLEPGRQAWPLSGQVAHRFAAGRTALVGEAAHVFPPIGAQGLNLGLRDVATLV  311 (388)
T ss_pred             HHHHHHHHHHHHhhhc--------CCeEEccCCcEeechHHHHHhhccCceEEEEhhhhcCCchhhcccchhHHHHHHHH
Confidence            3344444433221111        00111123456788777788999999999999999999999999999999999999


Q ss_pred             HHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCC
Q 010623          372 NLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGI  439 (506)
Q Consensus       372 ~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~  439 (506)
                      ++|....   .+....++|+.|+++|+++...+...++.+.++|... .+....+|+..+..+..-+.
T Consensus       312 ~~L~~~~---~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~R~~~l~~~~~~~~  375 (388)
T PRK07494        312 EIVEDRP---EDPGSAAVLAAYDRARRPDILSRTASVDLLNRSLLSD-FLPVQDLRAAGLHLLYSFGP  375 (388)
T ss_pred             HHHHhcC---CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHhhCHH
Confidence            9998742   2234568999999999999999988999999999887 88889999998877665443

>PRK07190 hypothetical protein; Provisional

Probab=100.00  E-value=4.7e-43  Score=361.39  Aligned_cols=335  Identities=16%  Similarity=0.145  Sum_probs=242.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .+||+||||||+||++|+.|+++|++|+|+||.+.+...+++..++++++++|+.+|+++.+.... .+.....+|.++.
T Consensus         5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~-~~~~~~~~~~~g~   83 (487)
T PRK07190          5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLG-KPCNTSSVWANGK   83 (487)
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhC-ccceeEEEecCCc
Confidence            489999999999999999999999999999999877667777889999999999999998876533 2333334455443


Q ss_pred             eeeeecC-CcCC--CCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeE
Q 010623          140 RTQISYP-LEKF--HSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLT  215 (506)
Q Consensus       140 ~~~~~~~-~~~~--~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~v  215 (506)
                      ....... ....  ...+....+++..+++.|.+.+.+. +++++++ +|+++.++++++   ++...+|+  +++|++|
T Consensus        84 ~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~-Gv~v~~~~~v~~l~~~~~~v---~v~~~~g~--~v~a~~v  157 (487)
T PRK07190         84 FISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEA-GAAVKRNTSVVNIELNQAGC---LTTLSNGE--RIQSRYV  157 (487)
T ss_pred             eEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHC-CCEEEeCCEEEEEEEcCCee---EEEECCCc--EEEeCEE
Confidence            3211110 0111  1112234678889999999999888 7888888 499999887754   34445665  5789999


Q ss_pred             EeecCCcccchhhccCCCCCCccceeeEEE---eccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCCCCCCCc
Q 010623          216 IVCDGCFSNLRRSLCNPKVDVPSCFVGLVL---ENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISN  292 (506)
Q Consensus       216 V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  292 (506)
                      |+|||.+|.+|++++++..+........+.   ...+.+.......+..+.+.+.++|..++..++++..+   .+..+.
T Consensus       158 VgADG~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~r~~~~~~---~~~~t~  234 (487)
T PRK07190        158 IGADGSRSFVRNHFNVPFEIIRPQIIWAVIDGVIDTDFPKVPEIIVFQAETSDVAWIPREGEIDRFYVRMD---TKDFTL  234 (487)
T ss_pred             EECCCCCHHHHHHcCCCccccccceeEEEEEEEEccCCCCCcceEEEEcCCCCEEEEECCCCEEEEEEEcC---CCCCCH
Confidence            999999999999999987654433222222   12333331222334456778888999877655544322   234556


Q ss_pred             hHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCC-CCcEEEEccCCCCCCCCcchhhHHHHHHHHHHH
Q 010623          293 GEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYP-TPGALLMGDAFNMRHPLTGGGMTVALSDIVILR  371 (506)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La  371 (506)
                      ++..+.+.+.+.+.   .+.     ..+......|++..+.+++|+ .|||+|+|||||.++|.+|||||+||+||.||+
T Consensus       235 ~~~~~~l~~~~~~~---~~~-----~~~~~w~s~~~~~~r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~giqDA~nL~  306 (487)
T PRK07190        235 EQAIAKINHAMQPH---RLG-----FKEIVWFSQFSVKESVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLADAFNLI  306 (487)
T ss_pred             HHHHHHHHHhcCCC---CCc-----eEEEEEEEEeeeCcEehhhcCcCCcEEEEecccccCCCccccchhhhHHHHHHHH
Confidence            66666666544322   110     011234567888888999997 799999999999999999999999999999999


Q ss_pred             HHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Q 010623          372 NLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVF  415 (506)
Q Consensus       372 ~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~  415 (506)
                      |+|+.+.+   +.+.+.+|++|++||+|++..+...++.+.++.
T Consensus       307 wkLa~v~~---g~a~~~lLdtY~~eR~p~a~~vl~~t~~~~~~~  347 (487)
T PRK07190        307 WKLNMVIH---HGASPELLQSYEAERKPVAQGVIETSGELVRST  347 (487)
T ss_pred             HHHHHHHc---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99997653   233478999999999999999999888777665

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=100.00  E-value=7.4e-43  Score=354.00  Aligned_cols=360  Identities=22%  Similarity=0.298  Sum_probs=260.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCc-----ccccccccchHHHHHHhCchhHHhhcccceecceEEEE
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDR-----IVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFK  136 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~-----~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  136 (506)
                      ||+||||||+|+++|+.|+++|++|+|+||++.+...     .++..+++++.+.|+++|+++.+.+....+..+..++.
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~   80 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD   80 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence            7999999999999999999999999999999865433     35678999999999999999888763334555566666


Q ss_pred             CCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeE
Q 010623          137 DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLT  215 (506)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~v  215 (506)
                      .+......++.........++.++|..+.+.|.+.+.+.++++++++ +|+++..++++   +.+..++|++  +++|+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~---~~v~~~~g~~--~~~~~v  155 (385)
T TIGR01988        81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDH---VELTLDDGQQ--LRARLL  155 (385)
T ss_pred             CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCe---eEEEECCCCE--EEeeEE
Confidence            54332233332222223345789999999999999998866888888 49999887764   4455677864  679999


Q ss_pred             EeecCCcccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCC---CCCCC
Q 010623          216 IVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQK---VPSIS  291 (506)
Q Consensus       216 V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~~~  291 (506)
                      |+|||.+|.+|++++++.....+...++... ....+.+.....++.+++.++++|++++..++.+..+.+.   ....+
T Consensus       156 i~adG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  235 (385)
T TIGR01988       156 VGADGANSKVRQLAGIPTTGWDYGQSAVVANVKHERPHQGTAWERFTPTGPLALLPLPDNRSSLVWTLPPEEAERLLALS  235 (385)
T ss_pred             EEeCCCCCHHHHHcCCCccccccCCeEEEEEEEecCCCCCEEEEEecCCCCEEEeECCCCCeEEEEECCHHHHHHHHcCC
Confidence            9999999999999987544332222222211 2222223333445667788999999999878877765321   11234


Q ss_pred             chHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHH
Q 010623          292 NGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILR  371 (506)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La  371 (506)
                      .+++.+.+.+.+.+.+. .+       ........+++....+.+|..+||+|+|||||.++|++|||+|+||+||.+|+
T Consensus       236 ~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAah~~~P~~G~G~~~Ai~da~~La  307 (385)
T TIGR01988       236 DEEFLAELQRAFGSRLG-AI-------TLVGERHAFPLSLTHAKRYVAPRLALIGDAAHTIHPLAGQGLNLGLRDVAALA  307 (385)
T ss_pred             HHHHHHHHHHHHhhhcC-ce-------EeccCcceeechhhhhhheecCceEEEecccccCCccccchhhhhHHHHHHHH
Confidence            44555555443322211 00       11123455666666678899999999999999999999999999999999999


Q ss_pred             HHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHh
Q 010623          372 NLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLS  435 (506)
Q Consensus       372 ~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~  435 (506)
                      +.|......+.....+++|+.|+++|++++..++..++.+.+++..+ ++....+|+..++.+.
T Consensus       308 ~~L~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~  370 (385)
T TIGR01988       308 EVLEDARRRGEDIGSPRVLQRYERRRRFDNAAMLGATDGLNRLFSND-FPPLRLLRNLGLRLLN  370 (385)
T ss_pred             HHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHh
Confidence            99986532111112468999999999999999999999999999876 7778888888877654

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=100.00  E-value=1.4e-42  Score=352.39  Aligned_cols=364  Identities=20%  Similarity=0.232  Sum_probs=253.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC------cccccccccchHHHHHHhCchhHHhhcccceecceE
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD------RIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYA  133 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~------~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  133 (506)
                      ++||+||||||+|+++|+.|+++|++|+|+|+.+....      ..+...+++++.++|+++|+++.+......+.....
T Consensus         5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~   84 (391)
T PRK08020          5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE   84 (391)
T ss_pred             cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence            58999999999999999999999999999999853221      123456889999999999999888654333333333


Q ss_pred             EEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEc
Q 010623          134 LFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYA  212 (506)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a  212 (506)
                      .+..... ...+..........++.++|..+.+.|.+.+.+.++++++.+ +++++.+++++   +.+..++|+  +++|
T Consensus        85 ~~~~~~~-~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~---~~v~~~~g~--~~~a  158 (391)
T PRK08020         85 TWEWETA-HVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG---WELTLADGE--EIQA  158 (391)
T ss_pred             EEeCCCC-eEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe---EEEEECCCC--EEEe
Confidence            3322111 122222222223345788999999999999988778888877 59998877664   445566775  4679


Q ss_pred             CeEEeecCCcccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCC---CC
Q 010623          213 PLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQK---VP  288 (506)
Q Consensus       213 ~~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~  288 (506)
                      |+||+|||.+|.+|+.++++.....+...++.+. ..+.+..+..+..+..+++..++|+.++...+++..+...   ..
T Consensus       159 ~~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~v~~~~~~~~~~~~  238 (391)
T PRK08020        159 KLVIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCENPPGDSTWQQFTPSGPRAFLPLFDNWASLVWYDSPARIRQLQ  238 (391)
T ss_pred             CEEEEeCCCCchhHHHcCCCccccCCCceEEEEEEEecCCCCCEEEEEEcCCCCEEEeECCCCcEEEEEECCHHHHHHHH
Confidence            9999999999999999987654433333333322 2223333444555666777888999877666655433211   01


Q ss_pred             CCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHH
Q 010623          289 SISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIV  368 (506)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~  368 (506)
                      ..+.+++.+.+.+.+.+.+.        . ........||+....+.+|..+|++|+|||||.++|++|||+|+||+||.
T Consensus       239 ~~~~~~~~~~l~~~~~~~~~--------~-~~~~~~~~~pl~~~~~~~~~~~rv~LvGDAAH~~~P~~GqG~n~al~Da~  309 (391)
T PRK08020        239 AMSMAQLQQEIAAHFPARLG--------A-VTPVAAGAFPLTRRHALQYVQPGLALVGDAAHTINPLAGQGVNLGYRDVD  309 (391)
T ss_pred             CCCHHHHHHHHHHHhhhhcc--------c-eEeccccEeecceeehhhhccCcEEEEechhhccCCcccchhHHHHHHHH
Confidence            11223333333322211111        0 11113345777666788999999999999999999999999999999999


Q ss_pred             HHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCC
Q 010623          369 ILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGI  439 (506)
Q Consensus       369 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~  439 (506)
                      +|+++|.+....+.+...+.+|+.|+++|+++...++..++.+.++|+.+ .+....+|+..+..+..-+.
T Consensus       310 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~-~~~~~~~R~~~l~~~~~~~~  379 (391)
T PRK08020        310 ALLDVLVNARSYGEAWASEAVLKRYQRRRMADNLLMQSGMDLFYAGFSNN-LPPLRFARNLGLMAAQRAGV  379 (391)
T ss_pred             HHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHhcCHH
Confidence            99999986532222233568999999999999999888999999999987 78889999999887765443

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=100.00  E-value=6.1e-43  Score=356.57  Aligned_cols=375  Identities=18%  Similarity=0.227  Sum_probs=260.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCC--CcccccccccchHHHHHHhCchhHHhhcccceecceEEEE
Q 010623           61 ADVIVVGAGVAGAALANTLAKDG--RRVHVIERDLSEP--DRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFK  136 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G--~~v~vvE~~~~~~--~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  136 (506)
                      +||+||||||+||++|+.|+++|  ++|+|+||.+...  ...++..++++++++|+++|+++.+.... .+...+.+++
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~-~~~~~~~~~~   80 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEA-QPITDMVITD   80 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhc-CcccEEEEEe
Confidence            79999999999999999999996  9999999987543  24578889999999999999998887643 3344455544


Q ss_pred             CCce-----eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEE
Q 010623          137 DGNR-----TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTA  210 (506)
Q Consensus       137 ~~~~-----~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i  210 (506)
                      ....     ....+........+.++.++|..+.+.|.+.+.+. +++++++ +|++++++++.   +.+..++|+  ++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-gv~v~~~~~v~~i~~~~~~---v~v~~~~g~--~~  154 (403)
T PRK07333         81 SRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEAL-GIDLREATSVTDFETRDEG---VTVTLSDGS--VL  154 (403)
T ss_pred             CCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhC-CCEEEcCCEEEEEEEcCCE---EEEEECCCC--EE
Confidence            2111     11121111111233456789999999999999887 7888877 59999887774   445566776  46


Q ss_pred             EcCeEEeecCCcccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCCCC-
Q 010623          211 YAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVP-  288 (506)
Q Consensus       211 ~a~~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-  288 (506)
                      +||+||+|||.+|.+|+.+++......+...+++.. ....+..+....++.++++++++|+++++.++.+..+.+..+ 
T Consensus       155 ~ad~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pl~~~~~~~~~~~~~~~~~~  234 (403)
T PRK07333        155 EARLLVAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHERPHGGRAEEHFLPAGPFAILPLKGNRSSLVWTERTADAER  234 (403)
T ss_pred             EeCEEEEcCCCChHHHHHcCCCcccccCCCEEEEEEEEcCCCCCCEEEEEeCCCCceEEeECCCCCeEEEEECCHHHHHH
Confidence            799999999999999999988654444334444332 222233344555667788899999999887776654321110 


Q ss_pred             --CCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHH
Q 010623          289 --SISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSD  366 (506)
Q Consensus       289 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~D  366 (506)
                        ....+...+.+.+.+...+.+ +       ........++.....+.+|..|||+|+|||||.++|++|||+|+||+|
T Consensus       235 ~~~~~~~~~~~~l~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~ai~D  306 (403)
T PRK07333        235 LVALDDLVFEAELEQRFGHRLGE-L-------KVLGKRRAFPLGLTLARSFVAPRFALVGDAAHGIHPIAGQGLNLGLKD  306 (403)
T ss_pred             HHCCCHHHHHHHHHHHhhhhcCc-e-------EeccCccEeechhhhhhhccCCCEEEEechhhcCCCccccchhhhHHH
Confidence              011112222222222111110 0       001122346666567789999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCchhHHH
Q 010623          367 IVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVS  446 (506)
Q Consensus       367 a~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~  446 (506)
                      |.+|+++|......+.+...+++|++|+++|+++...++..++.+.+++..+ ++....+|+..+..+..-+...+..+.
T Consensus       307 a~~La~~L~~~~~~~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~  385 (403)
T PRK07333        307 VAALAEVVVEAARLGLDIGSLDVLERYQRWRRFDTVRMGVTTDVLNRLFSND-STLLRSVRDIGLGLVDRLPKLKSFFIR  385 (403)
T ss_pred             HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            9999999987642222223578999999999999999999999999999876 778889999888877654444443344


Q ss_pred             hhcCC
Q 010623          447 LLSGL  451 (506)
Q Consensus       447 ~~~~~  451 (506)
                      .+.|+
T Consensus       386 ~~~g~  390 (403)
T PRK07333        386 QAAGL  390 (403)
T ss_pred             HHhCc
Confidence            44444

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=100.00  E-value=1.1e-42  Score=352.04  Aligned_cols=358  Identities=20%  Similarity=0.256  Sum_probs=253.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC-CcEEEEecCCCCCCc----ccccccccchHHHHHHhCchhHHhhcccceecceEEEE
Q 010623           62 DVIVVGAGVAGAALANTLAKDG-RRVHVIERDLSEPDR----IVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFK  136 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G-~~v~vvE~~~~~~~~----~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  136 (506)
                      ||+||||||+|+++|+.|+++| ++|+|+||.+.+...    .++..++++++++|+++|+++.+.... .......+..
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~-~~~~~~~~~~   79 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFA-TPILDIHVSD   79 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhc-CccceEEEEc
Confidence            7999999999999999999999 999999998765543    356789999999999999998886543 2333444443


Q ss_pred             CCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeE
Q 010623          137 DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLT  215 (506)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~v  215 (506)
                      .+......+....+.....++.++|..|.+.|.+.+.+.++++++++ +|+++.+++++   +++..++|+  +++||+|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~---~~v~~~~g~--~~~ad~v  154 (382)
T TIGR01984        80 QGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY---VRVTLDNGQ--QLRAKLL  154 (382)
T ss_pred             CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe---EEEEECCCC--EEEeeEE
Confidence            32211222222222223345778999999999999988658888876 59999877774   445566776  4679999


Q ss_pred             EeecCCcccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCC-eEEEEEEecCCC---CCCC
Q 010623          216 IVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSN-EVRCLVDIPGQK---VPSI  290 (506)
Q Consensus       216 V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~---~~~~  290 (506)
                      |+|||.+|.+|+.++++.....+....+... ..+.+.......++..++.+.++|.+++ ..++++..+.+.   ....
T Consensus       155 V~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  234 (382)
T TIGR01984       155 IAADGANSKVRELLSIPTEEHDYNQTALIANIRHEQPHQGCAFERFTPHGPLALLPLKDNYRSSLVWCLPSKQADTIANL  234 (382)
T ss_pred             EEecCCChHHHHHcCCCCcccccCCEEEEEEEEecCCCCCEEEEeeCCCCCeEECcCCCCCCEEEEEECCHHHHHHHHcC
Confidence            9999999999999987654333322222221 2222333333445666778889999888 666666554321   1122


Q ss_pred             CchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHH
Q 010623          291 SNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVIL  370 (506)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~L  370 (506)
                      +.++..+.+.+.+.+    .+.    ..........++......++|..+||+|+|||||.++|++|||+|+||+||.+|
T Consensus       235 ~~~~~~~~~~~~~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~Da~~L  306 (382)
T TIGR01984       235 PDAEFLAELQQAFGW----RLG----KITQVGERKTYPLKLRIAETHVHPRVVLIGNAAQTLHPIAGQGFNLGLRDVETL  306 (382)
T ss_pred             CHHHHHHHHHHHHhh----hcc----CeEEcCCccEeecchhhhhheecCCEEEEeecccccCCccccchhhhHHHHHHH
Confidence            333333333332211    111    111123445667666678889999999999999999999999999999999999


Q ss_pred             HHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcC
Q 010623          371 RNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLG  437 (506)
Q Consensus       371 a~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g  437 (506)
                      +++|....   .+...+++|+.|+++|++++..++..+..+.+++..+ ++....+|+..++.+..-
T Consensus       307 a~~L~~~~---~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~  369 (382)
T TIGR01984       307 AEVLIDAR---IDLGTYALLQEYLRRRQFDQFITIGLTDGLNRLFSNH-IPLLRALRNLGLLALENF  369 (382)
T ss_pred             HHHHHHhc---cCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHhcC
Confidence            99998653   1123468999999999999999999999999999876 777788999888776543

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=100.00  E-value=1.5e-41  Score=344.23  Aligned_cols=358  Identities=21%  Similarity=0.242  Sum_probs=240.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC--CCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE--PDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD  137 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~--~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  137 (506)
                      ++||+||||||+||++|+.|+++|++|+|+||.+..  ....++..++++++++|+++|+++.+.... ....++.++.+
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~-~~~~~~~~~~~   80 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREG-LVHDGIELRFD   80 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcC-CccCcEEEEEC
Confidence            589999999999999999999999999999999753  223455679999999999999999887643 34566666666


Q ss_pred             CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEe-eCCeEEEEEEEeCCccEEEEEcCeE
Q 010623          138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLE-EKGTIKGVQYKTKAGEELTAYAPLT  215 (506)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~-~~~~v~~v~v~~~~G~~~~i~a~~v  215 (506)
                      +......++  ..........++|..+.+.|.+.+.+. ++++++++ ++++++ +++. ..|++. .+|++.+++||+|
T Consensus        81 g~~~~~~~~--~~~~~~~~~~~~~~~l~~~Ll~~a~~~-gv~v~~~~~v~~i~~~~~~~-~~V~~~-~~G~~~~i~ad~v  155 (392)
T PRK08243         81 GRRHRIDLT--ELTGGRAVTVYGQTEVTRDLMAARLAA-GGPIRFEASDVALHDFDSDR-PYVTYE-KDGEEHRLDCDFI  155 (392)
T ss_pred             CEEEEeccc--cccCCceEEEeCcHHHHHHHHHHHHhC-CCeEEEeeeEEEEEecCCCc-eEEEEE-cCCeEEEEEeCEE
Confidence            654333332  211122233567888888898888776 67787774 888876 4443 235542 4677667899999


Q ss_pred             EeecCCcccchhhccCCCCC---C--ccceeeEEEeccCCCCCCeeEEEecC-CCcEEEEecCCCeEEEEEEecCC-CCC
Q 010623          216 IVCDGCFSNLRRSLCNPKVD---V--PSCFVGLVLENCNLPFENHGHVVLAD-PSPILFYPISSNEVRCLVDIPGQ-KVP  288 (506)
Q Consensus       216 V~AdG~~S~vR~~l~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~-~~~  288 (506)
                      |+|||.+|.+|++++.....   .  +..+.++.   .+.+.......+... .+..++++.+++..++++.++.. ..+
T Consensus       156 VgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (392)
T PRK08243        156 AGCDGFHGVSRASIPAGALRTFERVYPFGWLGIL---AEAPPVSDELIYANHERGFALCSMRSPTRSRYYLQCPLDDKVE  232 (392)
T ss_pred             EECCCCCCchhhhcCcchhhceecccCceEEEEe---CCCCCCCCceEEeeCCCceEEEecCCCCcEEEEEEecCCCCcc
Confidence            99999999999999764321   1  11222222   122221112223333 34444455555555666655432 233


Q ss_pred             CCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHH
Q 010623          289 SISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIV  368 (506)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~  368 (506)
                      .++.++..+.+.+.+.+.....+.    . .+......++.....+.+|..|||+|+|||||.++|++|||+|+||+||.
T Consensus       233 ~~~~~~~~~~l~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~ai~Da~  307 (392)
T PRK08243        233 DWSDERFWDELRRRLPPEDAERLV----T-GPSIEKSIAPLRSFVAEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVR  307 (392)
T ss_pred             cCChhHHHHHHHHhcCcccccccc----c-CccccccceeeeeceeccceeCCEEEEecccccCCCCcCcchhHHHHHHH
Confidence            344555555555543322111110    0 00011123455556678899999999999999999999999999999999


Q ss_pred             HHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCC--chhHHHHHHHHHHHHh
Q 010623          369 ILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASP--DEARKEMRQACFDYLS  435 (506)
Q Consensus       369 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~--~~~~~~~r~~~~~~~~  435 (506)
                      +|+|+|....+.    ..+++|++|+++|++++..++..+..+.++++..+  ++....+|+..++.+.
T Consensus       308 ~La~~L~~~~~~----~~~~~L~~Ye~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (392)
T PRK08243        308 YLARALVEFYRE----GDTALLDAYSATALRRVWKAERFSWWMTSMLHRFPDDDPFDQRIQLAELDYLT  372 (392)
T ss_pred             HHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHh
Confidence            999999876421    13689999999999999999999998888877642  3455667777766544

>PRK06996 hypothetical protein; Provisional

Probab=100.00  E-value=9e-42  Score=346.33  Aligned_cols=356  Identities=17%  Similarity=0.175  Sum_probs=252.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC----CcEEEEecCCCCC--CcccccccccchHHHHHHhCchhHHhhcccceecce
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDG----RRVHVIERDLSEP--DRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGY  132 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G----~~v~vvE~~~~~~--~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~  132 (506)
                      ..+||+||||||+|+++|+.|+++|    ++|+|+|+.+...  ..+++..++++++++|+++|+++...    .+....
T Consensus        10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~----~~~~~~   85 (398)
T PRK06996         10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADA----TPIEHI   85 (398)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcC----CcccEE
Confidence            4589999999999999999999997    4799999985432  23467889999999999999997521    233344


Q ss_pred             EEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCC--ccEEE
Q 010623          133 ALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKA--GEELT  209 (506)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~--G~~~~  209 (506)
                      .++..+......+...+......++.++|..+++.|.+.+.+. ++++..+ +++++++++++   |+++..+  |+ .+
T Consensus        86 ~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~-g~~~~~~~~v~~~~~~~~~---v~v~~~~~~g~-~~  160 (398)
T PRK06996         86 HVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGT-PVRWLTSTTAHAPAQDADG---VTLALGTPQGA-RT  160 (398)
T ss_pred             EEecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhC-CCEEEcCCeeeeeeecCCe---EEEEECCCCcc-eE
Confidence            4444333222233333333344578899999999999999998 5778777 48888877764   4444443  32 36


Q ss_pred             EEcCeEEeecCC-cccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCCe---EEEEEEecC
Q 010623          210 AYAPLTIVCDGC-FSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNE---VRCLVDIPG  284 (506)
Q Consensus       210 i~a~~vV~AdG~-~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~~~~~  284 (506)
                      ++||+||+|||. +|.+|+.+++......+...++... ..+.+.+...+..+...+++.++|+.++.   .++++..++
T Consensus       161 i~a~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~~~lp~~~~~~~~~~~v~~~~~  240 (398)
T PRK06996        161 LRARIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSAPRPGWAWERFTHEGPLALLPLGGPRQADYALVWCCAP  240 (398)
T ss_pred             EeeeEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccCCCCCEEEEEecCCCCeEEeECCCCCCCcEEEEEECCH
Confidence            889999999997 5788998887655544444444332 22333444445556777889999998654   455555543


Q ss_pred             CCC---CCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhH
Q 010623          285 QKV---PSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMT  361 (506)
Q Consensus       285 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n  361 (506)
                      +..   ..++.++..+.+.+.+.+.+.. +.       .......++.....+.+|..|||+|+|||||.++|++|||+|
T Consensus       241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~-------~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n  312 (398)
T PRK06996        241 DEAARRAALPDDAFLAELGAAFGTRMGR-FT-------RIAGRHAFPLGLNAARTLVNGRIAAVGNAAQTLHPVAGQGLN  312 (398)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHhccccCc-eE-------EecceEEEeeecccccceecCCEEEEEhhhccCCcccchhHH
Confidence            211   1233344444444433322211 10       112233567777778899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCC
Q 010623          362 VALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGG  438 (506)
Q Consensus       362 ~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~  438 (506)
                      +||+||.+|+++|...   +   ..+++|++|+++|+++...++..++.+.++|... ++....+|+..+..+..-+
T Consensus       313 ~ai~Da~~La~~L~~~---~---~~~~~L~~Y~~~R~~~~~~~~~~s~~l~~~~~~~-~~~~~~~R~~~l~~~~~~~  382 (398)
T PRK06996        313 LGLRDAHTLADALSDH---G---ATPLALATFAARRALDRRVTIGATDLLPRLFTVD-SRPLAHLRGAALTALEFVP  382 (398)
T ss_pred             HHHHHHHHHHHHHHhc---C---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHhHHHHHHhhCH
Confidence            9999999999999752   1   1346799999999999999999999999999886 7788899998877665443

>PRK06753 hypothetical protein; Provisional

Probab=100.00  E-value=4e-41  Score=339.59  Aligned_cols=352  Identities=17%  Similarity=0.201  Sum_probs=246.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      .+|+||||||+||++|+.|+++|++|+|+||++.......+..+++++++.|+++|+.+.+.... .....+.+++....
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~-~~~~~~~~~~~~g~   79 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAG-QILSTMNLLDDKGT   79 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcC-CcccceeEEcCCCC
Confidence            38999999999999999999999999999999887777788889999999999999998876532 34455566554222


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD  219 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad  219 (506)
                      .....+.   .....++.++|..|.+.|.+.+..   .+++++ +|+++++++++   +++++++|++  +++|+||+||
T Consensus        80 ~~~~~~~---~~~~~~~~i~R~~l~~~L~~~~~~---~~i~~~~~v~~i~~~~~~---v~v~~~~g~~--~~~~~vigad  148 (373)
T PRK06753         80 LLNKVKL---KSNTLNVTLHRQTLIDIIKSYVKE---DAIFTGKEVTKIENETDK---VTIHFADGES--EAFDLCIGAD  148 (373)
T ss_pred             EEeeccc---ccCCccccccHHHHHHHHHHhCCC---ceEEECCEEEEEEecCCc---EEEEECCCCE--EecCEEEECC
Confidence            2111221   122345678999999999988753   467777 59999877664   5566777864  5799999999


Q ss_pred             CCcccchhhccCCCCCCccceeeEE--EeccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCCCCCCCchHHHH
Q 010623          220 GCFSNLRRSLCNPKVDVPSCFVGLV--LENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMAN  297 (506)
Q Consensus       220 G~~S~vR~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (506)
                      |.+|.+|+.++.........+..+.  ......+.++....+++.+++++++|..+++.+|.+.+..+...........+
T Consensus       149 G~~S~vR~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (373)
T PRK06753        149 GIHSKVRQSVNADSKVRYQGYTCFRGLIDDIDLKLPDCAKEYWGTKGRFGIVPLLNNQAYWFITINAKERDPKYSSFGKP  228 (373)
T ss_pred             CcchHHHHHhCCCCCceEcceEEEEEEeccccccCccceEEEEcCCCEEEEEEcCCCeEEEEEEeccccCCcccccccHH
Confidence            9999999999764322111122111  11122223333445667777889999999887787766432111111111122


Q ss_pred             HHHHhcCCCCChhhhHHHHhhhcCCCeEEecCC-ccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHHHHhhh
Q 010623          298 YLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNR-SMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRH  376 (506)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~  376 (506)
                      .+.+.+. .+++.+.+.+.. .....+..++.. ..+..+|..+||+|+|||||.|+|+.|||+|+||+||..|++.|..
T Consensus       229 ~l~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L~~  306 (373)
T PRK06753        229 HLQAYFN-HYPNEVREILDK-QSETGILHHDIYDLKPLKSFVYGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCLNA  306 (373)
T ss_pred             HHHHHHh-cCChHHHHHHHh-CCcccceeeccccccccccccCCCEEEEecccccCCCCcCccHHHHHHHHHHHHHHhhh
Confidence            2333332 234444433322 222222333322 2345788999999999999999999999999999999999999963


Q ss_pred             cCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHH
Q 010623          377 LSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYL  434 (506)
Q Consensus       377 ~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~  434 (506)
                             .+.+++|+.|+++|++++..++..++.+.++++.+ .+....+|+..++..
T Consensus       307 -------~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~-~~~~~~~r~~~l~~~  356 (373)
T PRK06753        307 -------YDFEKALQRYDKIRVKHTAKVIKRSRKIGKIAQIE-SKLLVALRNRVMKRM  356 (373)
T ss_pred             -------ccHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHhcC-CchHHHHHHHHHHhC
Confidence                   24578999999999999999999999999998876 677788888887654

>PRK07588 hypothetical protein; Provisional

Probab=100.00  E-value=3.1e-41  Score=342.25  Aligned_cols=357  Identities=16%  Similarity=0.178  Sum_probs=247.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      .||+||||||+||++|+.|+++|++|+|+||.+.......+..++++++++|+++|+++.+.+.. .+...+.++.....
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~-~~~~~~~~~~~~g~   79 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAG-YQIEHVRSVDPTGR   79 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhcc-CCccceEEEcCCCC
Confidence            38999999999999999999999999999999766555556678899999999999998887643 34455555543222


Q ss_pred             eeeecCCcCCCC--CcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEe
Q 010623          141 TQISYPLEKFHS--DVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV  217 (506)
Q Consensus       141 ~~~~~~~~~~~~--~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~  217 (506)
                      ....++......  ....+.++|..|.+.|.+.+..  ++++++++ |+++++++++   |++.+++|++  +++|+||+
T Consensus        80 ~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~--~v~i~~~~~v~~i~~~~~~---v~v~~~~g~~--~~~d~vIg  152 (391)
T PRK07588         80 RKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDG--QVETIFDDSIATIDEHRDG---VRVTFERGTP--RDFDLVIG  152 (391)
T ss_pred             EEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhc--CeEEEeCCEEeEEEECCCe---EEEEECCCCE--EEeCEEEE
Confidence            222232222111  1122468899999999886643  68888885 9999887774   5566778874  56999999


Q ss_pred             ecCCcccchhhccCCCCCCccceeeEEEec----cCCCCCCe-eEEEecCCCcEEEEecCCCeEEEEEEecCC-CCCCCC
Q 010623          218 CDGCFSNLRRSLCNPKVDVPSCFVGLVLEN----CNLPFENH-GHVVLADPSPILFYPISSNEVRCLVDIPGQ-KVPSIS  291 (506)
Q Consensus       218 AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~  291 (506)
                      |||.+|.+|+.+...... ...+.+.....    ...+.+.. ...+.+++.++..+|+++++..+.+....+ ..+.++
T Consensus       153 ADG~~S~vR~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  231 (391)
T PRK07588        153 ADGLHSHVRRLVFGPERD-FEHYLGCKVAACVVDGYRPRDERTYVLYNEVGRQVARVALRGDRTLFLFIFRAEHDNPPLT  231 (391)
T ss_pred             CCCCCccchhhccCCccc-eEEEcCcEEEEEEcCCCCCCCCceEEEEeCCCCEEEEEecCCCCeEEEEEEEcCCccccCC
Confidence            999999999986433221 11222222211    11222222 233445566889999988876666654422 223345


Q ss_pred             chHHHHHHHHhcCCCCC--hhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHH
Q 010623          292 NGEMANYLKTVVAPQIP--REIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVI  369 (506)
Q Consensus       292 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~  369 (506)
                      .++..+.+.+.+....+  +.+.+.+.   ....+...+.......+|..|||+|+|||||.|+|+.|||+|+||+||..
T Consensus       232 ~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~  308 (391)
T PRK07588        232 PAEEKQLLRDQFGDVGWETPDILAALD---DVEDLYFDVVSQIRMDRWSRGRVALVGDAAACPSLLGGEGSGLAITEAYV  308 (391)
T ss_pred             HHHHHHHHHHHhccCCccHHHHHHhhh---cccchheeeeeeeccCccccCCEEEEEccccCCCCccCCcHHHHHHHHHH
Confidence            55666666665442211  12222211   11112222223345678999999999999999999999999999999999


Q ss_pred             HHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHh
Q 010623          370 LRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLS  435 (506)
Q Consensus       370 La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~  435 (506)
                      |+++|....     .+.+.+|+.|+++|++++..++..++.+.+++..+ ++....+|+..+..+.
T Consensus       309 La~~L~~~~-----~~~~~al~~Y~~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~R~~~~~~~~  368 (391)
T PRK07588        309 LAGELARAG-----GDHRRAFDAYEKRLRPFIAGKQAAAAKFLSVFAPK-TRFGLYVRNIAMKIMN  368 (391)
T ss_pred             HHHHHHhcc-----CCHHHHHHHHHHHHHHHHHHHHhhcccccccccCC-CHHHHHHHHHHHHHhc
Confidence            999998532     13568999999999999999999999999988876 7888889999887765

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=100.00  E-value=3.8e-41  Score=341.66  Aligned_cols=362  Identities=18%  Similarity=0.236  Sum_probs=253.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCc-----ccccccccchHHHHHHhCchhHHhhcccceecceE
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDR-----IVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYA  133 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~-----~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  133 (506)
                      +++||+||||||+|+++|+.|++.|++|+|+||.+.....     .++..++++++++|+++|+++.+......+.....
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~   83 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMR   83 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEE
Confidence            4689999999999999999999999999999998765432     23366899999999999999887543333444444


Q ss_pred             EEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcC
Q 010623          134 LFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAP  213 (506)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~  213 (506)
                      ++.+... ...+...........+.+++..+.+.|.+.+++.++++++..+++++.++++.   +.+++.+|+  +++||
T Consensus        84 ~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~~~~v~~i~~~~~~---~~v~~~~g~--~~~a~  157 (388)
T PRK07608         84 VFGDAHA-RLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWFPARAQGLEVDPDA---ATLTLADGQ--VLRAD  157 (388)
T ss_pred             EEECCCc-eeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEEcceeEEEEecCCe---EEEEECCCC--EEEee
Confidence            4433211 12211111111223467889999999999999886688884469998877664   445566775  46799


Q ss_pred             eEEeecCCcccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCC---CCC
Q 010623          214 LTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQK---VPS  289 (506)
Q Consensus       214 ~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~  289 (506)
                      +||+|||.+|.+|+.++.......+...++... ..+.+..+....++.+++.++++|++++...+.+..+...   ...
T Consensus       158 ~vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  237 (388)
T PRK07608        158 LVVGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAERPHRGTAYQWFRDDGILALLPLPDGHVSMVWSARTAHADELLA  237 (388)
T ss_pred             EEEEeCCCCchHHHhcCCCccccccCCEEEEEEEEecCCCCCEEEEEecCCCCEEEeECCCCCeEEEEECCHHHHHHHHC
Confidence            999999999999999987654433333343332 2233333345566778889999999999776666543211   111


Q ss_pred             CCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHH
Q 010623          290 ISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVI  369 (506)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~  369 (506)
                      .+++++.+.+.+...+.+ ..+       ........++......+.|..+||+|+|||||.++|++|||+|+||+||.+
T Consensus       238 ~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~rv~liGDAAh~~~P~~GqG~n~ai~da~~  309 (388)
T PRK07608        238 LSPEALAARVERASGGRL-GRL-------ECVTPAAGFPLRLQRVDRLVAPRVALVGDAAHLIHPLAGQGMNLGLRDVAA  309 (388)
T ss_pred             CCHHHHHHHHHHHHHHhc-CCc-------eecCCcceeecchhhhhhhhcCceEEEeccccccCCccccccchhHHHHHH
Confidence            233444444444321100 000       001122345666566788999999999999999999999999999999999


Q ss_pred             HHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhc
Q 010623          370 LRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSL  436 (506)
Q Consensus       370 La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~  436 (506)
                      |+++|....... +....++|++|+++|+++...++..++.+.+++..+ ++....+|+..+..+..
T Consensus       310 La~~L~~~~~~~-~~~~~~~l~~Ye~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~  374 (388)
T PRK07608        310 LADVLAGREPFR-DLGDLRLLRRYERARREDILALQVATDGLQRLFALP-GPLARWLRNAGMALVGA  374 (388)
T ss_pred             HHHHHHHhhccC-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHhh
Confidence            999998653111 122347999999999999999999999999999876 77788899998876653

>PRK06847 hypothetical protein; Provisional

Probab=100.00  E-value=1.1e-40  Score=336.69  Aligned_cols=358  Identities=19%  Similarity=0.245  Sum_probs=245.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      ..||+||||||+||++|+.|++.|++|+|+||++.......+..+++++++.|+++|+.+.+.+.. .+.....+++...
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~-~~~~~~~~~~~~g   82 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAG-FGFDGVDLFDPDG   82 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhC-CCccceEEECCCC
Confidence            579999999999999999999999999999999877667778889999999999999998876643 2344455554322


Q ss_pred             eeeeecCCcCCC--CCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623          140 RTQISYPLEKFH--SDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI  216 (506)
Q Consensus       140 ~~~~~~~~~~~~--~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV  216 (506)
                      .....++.....  ..+....++|..+.+.|.+.+.+. +++++++ +|+++..++++   +.+...+|++  +++|+||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-gv~v~~~~~v~~i~~~~~~---~~v~~~~g~~--~~ad~vI  156 (375)
T PRK06847         83 TLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAA-GADVRLGTTVTAIEQDDDG---VTVTFSDGTT--GRYDLVV  156 (375)
T ss_pred             CEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHh-CCEEEeCCEEEEEEEcCCE---EEEEEcCCCE--EEcCEEE
Confidence            222222211111  112235678999999999999876 6788887 59999877664   4455667764  6699999


Q ss_pred             eecCCcccchhhccCCCCCCccceeeEEEec--cCC-CCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCCCCCCCch
Q 010623          217 VCDGCFSNLRRSLCNPKVDVPSCFVGLVLEN--CNL-PFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNG  293 (506)
Q Consensus       217 ~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  293 (506)
                      +|||.+|.+|+.+......  ..+.+.....  ... +.......+.++++.+.++|.+++...+++..+.......+.+
T Consensus       157 ~AdG~~s~~r~~l~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  234 (375)
T PRK06847        157 GADGLYSKVRSLVFPDEPE--PEYTGQGVWRAVLPRPAEVDRSLMYLGPTTKAGVVPLSEDLMYLFVTEPRPDNPRIEPD  234 (375)
T ss_pred             ECcCCCcchhhHhcCCCCC--ceeccceEEEEEecCCCCccceEEEeCCCcEEEEEcCCCCeEEEEEeccCcccccCChH
Confidence            9999999999988432111  1122211111  111 1112235666777788899998876655554443332333444


Q ss_pred             HHHHHHHHhcCCCCChhhhHHHHhhhc-CCCeEEecCCcc-CCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHH
Q 010623          294 EMANYLKTVVAPQIPREIFHSFVAAVD-GGNIKTMPNRSM-PAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILR  371 (506)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La  371 (506)
                      +..+.+++.+....++.+ ..+.+.+. ...+..+++... ...+|..|||+|+|||||.++|++|||+|+||+||.+|+
T Consensus       235 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAaH~~~P~~GqG~n~aieDA~~La  313 (375)
T PRK06847        235 TLAALLRELLAPFGGPVL-QELREQITDDAQVVYRPLETLLVPAPWHRGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLA  313 (375)
T ss_pred             HHHHHHHHHHhhcCchHH-HHHHHhcCCccceeeccHhhccCCCCccCCeEEEEechhccCCCCccccHHHHHHHHHHHH
Confidence            555556554433222122 22222222 223344454432 346799999999999999999999999999999999999


Q ss_pred             HHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCch---hHHHHHHHHHHHH
Q 010623          372 NLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDE---ARKEMRQACFDYL  434 (506)
Q Consensus       372 ~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~---~~~~~r~~~~~~~  434 (506)
                      ++|...      ..++++|+.|+++|+|++..++..++.+.+.+... .+   ....+|+.++.++
T Consensus       314 ~~L~~~------~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  372 (375)
T PRK06847        314 EELARH------DSLEAALQAYYARRWERCRMVVEASARIGRIEIEG-GDKAEHAGLMRESMELLA  372 (375)
T ss_pred             HHHhhC------CcHHHHHHHHHHHHHHHHHHHHHHHHHhhheecCC-CCccchHHHHHHHHHHhc
Confidence            999752      34678999999999999999999999888886544 23   4456677766543

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=100.00  E-value=3.4e-41  Score=342.92  Aligned_cols=363  Identities=21%  Similarity=0.236  Sum_probs=248.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC---CCcEEEEecCCCC-----CCcccccccccchHHHHHHhCchhHHhhcccceec
Q 010623           59 FDADVIVVGAGVAGAALANTLAKD---GRRVHVIERDLSE-----PDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVF  130 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~---G~~v~vvE~~~~~-----~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~  130 (506)
                      +.+||+||||||+|+++|+.|+++   |++|+|+||....     ....++..+++++++.|+++|+++.+.+.. .+..
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~-~~~~   80 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCA-TPIT   80 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhc-CCcc
Confidence            358999999999999999999998   9999999995321     122457789999999999999998887643 2333


Q ss_pred             ceEEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEE
Q 010623          131 GYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELT  209 (506)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~  209 (506)
                      ...+...+......+...+......++.++|..+.+.|.+.+.+.++++++++ +++++.+++++   +.++.++|.  +
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~---~~v~~~~g~--~  155 (395)
T PRK05732         81 HIHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGS---VRVTLDDGE--T  155 (395)
T ss_pred             EEEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe---EEEEECCCC--E
Confidence            33333332221111111122222334678899999999999888778888877 59999877664   445566675  3


Q ss_pred             EEcCeEEeecCCcccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCC--
Q 010623          210 AYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQK--  286 (506)
Q Consensus       210 i~a~~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~--  286 (506)
                      +++|+||+|||.+|.+|+.+++...........+... ....+........+.+++.++++|.++++..+++.++.+.  
T Consensus       156 ~~a~~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~g~~~~~~~~~~~~~~  235 (395)
T PRK05732        156 LTGRLLVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSEAHQGRAFERFTEHGPLALLPMSDGRCSLVWCHPLEDAE  235 (395)
T ss_pred             EEeCEEEEecCCChhhHHhhCCCccceecCCEEEEEEEEecCCCCCEEEEeecCCCCEEEeECCCCCeEEEEECCHHHHH
Confidence            6799999999999999999987644333222222211 1111122222334556678889999999877777665321  


Q ss_pred             -CCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHH
Q 010623          287 -VPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALS  365 (506)
Q Consensus       287 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~  365 (506)
                       ...++.++..+.+.+.+.    ..+    ...........+++....+.+|..|||+|+|||||.++|++|||+|+||+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~~~~~~~l~~~~~~~~~~grv~LvGDAAh~~~P~~GqG~~~al~  307 (395)
T PRK05732        236 EVLSWSDAQFLAELQQAFG----WRL----GRITHAGKRSAYPLALVTAAQQISHRLALVGNAAQTLHPIAGQGFNLGLR  307 (395)
T ss_pred             HHHcCCHHHHHHHHHHHHH----hhh----cceeecCCcceecccccchhhhccCcEEEEeecccccCCccccccchHHH
Confidence             112233333333333211    000    01111223345666666678899999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhc
Q 010623          366 DIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSL  436 (506)
Q Consensus       366 Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~  436 (506)
                      ||.+|+++|..+.....+...+++|+.|+++|++++...+..++.+.+++..+ .+....+|+..+..+..
T Consensus       308 Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~  377 (395)
T PRK05732        308 DVMSLAETLTQALARGEDIGDYAVLQRYQQRRQQDREATIGFTDGLVRLFANR-WAPLVVGRNLGLMAMDL  377 (395)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHcc
Confidence            99999999976532111112357999999999999999999999999999875 67788889988777654

>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria

Probab=100.00  E-value=5.3e-41  Score=308.76  Aligned_cols=271  Identities=56%  Similarity=0.965  Sum_probs=255.8

Q ss_pred             cCeEEeecCCcccchhhccCCCCCCccceeeEEEeccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCCCCCCC
Q 010623          212 APLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSIS  291 (506)
Q Consensus       212 a~~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  291 (506)
                      |+++|+|||.+|++|+.+....+...+++.|+...++++|.++++++++++++++.+|+++.+++|+.+.++.++.|+.+
T Consensus         2 A~LtivaDG~~S~fRk~l~~~~~~v~S~fvGl~l~~~~lp~~~~ghvil~~~~pil~YqI~~~etR~Lvdvp~~k~P~~~   81 (276)
T PF08491_consen    2 APLTIVADGCFSKFRKELSDNKPQVRSYFVGLILKDAPLPKPNHGHVILGKPGPILLYQISSNETRVLVDVPGPKLPSVS   81 (276)
T ss_pred             CCEEEEecCCchHHHHhhcCCCCceeeeEEEEEEcCCCCCCCCceEEEEcCCCcEEEEEcCCCceEEEEEeCCCccCCcc
Confidence            78999999999999999997777788899999999999999999999999999999999999999999999988888888


Q ss_pred             chHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHH
Q 010623          292 NGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILR  371 (506)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La  371 (506)
                      .+++++++++.+.|.+|+++++.+.++++.++++.+|....++......+++++|||+++.||++|+||+.|+.|+..|+
T Consensus        82 ~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~rirsMPn~~lp~~~~~~~G~vllGDA~nmrHPLTGgGMTVAl~Dv~lL~  161 (276)
T PF08491_consen   82 NGELKEYLREVVAPQLPEELRPSFEKALEDGRIRSMPNSFLPASPNWKPGVVLLGDAANMRHPLTGGGMTVALNDVVLLR  161 (276)
T ss_pred             chHHHHHHHHHHHhhchHHHHHHHHHHhccCCcceecccccCCCCCCCCCEEEEehhhcCcCCccccchhhHHHHHHHHH
Confidence            88999999999999999999999999999999999999999988888899999999999999999999999999999999


Q ss_pred             HHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCchhHHHhhcCC
Q 010623          372 NLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGL  451 (506)
Q Consensus       372 ~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~  451 (506)
                      +.|....+..+...+.+++++|+.+|++....++.++.+++.+|..+ ++....+|+.||+|++.|+.+.++|+.+++|+
T Consensus       162 ~lL~~~~dl~d~~~v~~~l~~f~~~Rk~~~s~iNiLA~aLY~lF~a~-~~~l~~Lr~gcf~Yf~~GG~~~~gpv~LLsgl  240 (276)
T PF08491_consen  162 DLLSPIPDLSDTKAVLEALKKFHWKRKPLSSVINILAQALYSLFAAD-DDYLKALRQGCFKYFQLGGECVSGPVALLSGL  240 (276)
T ss_pred             HHHhhhcCcccHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCCCCcchHHHhccC
Confidence            99998877778888999999999999999999999999999999998 77788999999999999999999999999999


Q ss_pred             CCCchhhHHHHHHHHHHHHHHhhccCC---ChHHH
Q 010623          452 NPRPLILVFHFFAVAIYGVGRILLPFP---SPYRF  483 (506)
Q Consensus       452 ~~~p~~~~~h~~~~~l~~~~~~l~~~~---~~~~~  483 (506)
                      .++|..++.||+.|.+|+++..+.+.+   .|.+.
T Consensus       241 ~p~P~~L~~Hff~Va~~~i~~~~~~~p~~~~P~~~  275 (276)
T PF08491_consen  241 NPRPLVLFYHFFAVAFYAIYLNLKPRPWYGFPLAL  275 (276)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHcccCCcccCChhh
Confidence            999999999999999999999998876   55544

SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane

>PRK06475 salicylate hydroxylase; Provisional

Probab=100.00  E-value=3.1e-40  Score=335.47  Aligned_cols=354  Identities=20%  Similarity=0.246  Sum_probs=238.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+||||||+||++|+.|+++|++|+|+||.+.....+.+..++++++++|+++|+++.+....... ..+.+. ++..
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~-~~~~~~-~g~~   80 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTP-KALYLM-DGRK   80 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCc-ceEEEe-cCCC
Confidence            58999999999999999999999999999999877777788889999999999999998887644322 222222 2221


Q ss_pred             ee--eecCCcCCC---CCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCe
Q 010623          141 TQ--ISYPLEKFH---SDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPL  214 (506)
Q Consensus       141 ~~--~~~~~~~~~---~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~  214 (506)
                      ..  .........   .......++|..|.+.|.+.+.+.+++++++++ |+++.++++++. +++.+.+++ .+++||+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~-v~~~~~~~~-~~~~adl  158 (400)
T PRK06475         81 ARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSIT-ATIIRTNSV-ETVSAAY  158 (400)
T ss_pred             cceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceE-EEEEeCCCC-cEEecCE
Confidence            11  111111100   111223679999999999999877688898885 999988776543 444333333 2467999


Q ss_pred             EEeecCCcccchhhccCCCCCCc--cceeeEEEeccCC--------CCCCeeEEEecCCCcEEEEecCCCeEEEEEEecC
Q 010623          215 TIVCDGCFSNLRRSLCNPKVDVP--SCFVGLVLENCNL--------PFENHGHVVLADPSPILFYPISSNEVRCLVDIPG  284 (506)
Q Consensus       215 vV~AdG~~S~vR~~l~~~~~~~~--~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  284 (506)
                      ||+|||.+|.+|++++.+...+.  ..+.+.+.. ..+        +..+....++++++.+..||+++++..+++....
T Consensus       159 vIgADG~~S~vR~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~  237 (400)
T PRK06475        159 LIACDGVWSMLRAKAGFSKARFSGHIAWRTTLAA-DALPASFLSAMPEHKAVSAWLGNKAHFIAYPVKGGKFFNFVAITG  237 (400)
T ss_pred             EEECCCccHhHHhhcCCCCCCcCCceEEEEEeeh-hhcchhhhhhcccCCceEEEEcCCCEEEEEEccCCcEEEEEEEEc
Confidence            99999999999999865332221  122222211 111        1222345667888899999999876554443322


Q ss_pred             C--CCCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCC-CCCcEEEEccCCCCCCCCcchhhH
Q 010623          285 Q--KVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPY-PTPGALLMGDAFNMRHPLTGGGMT  361 (506)
Q Consensus       285 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~rv~LvGDAAh~~~P~~GqG~n  361 (506)
                      .  ....+......+.+.+.+ ..+++.+...+...   .....||+......+| ..|||+|+|||||+++|+.|||+|
T Consensus       238 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~i~~~---~~~~~~~l~~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n  313 (400)
T PRK06475        238 GENPGEVWSKTGDKAHLKSIY-ADWNKPVLQILAAI---DEWTYWPLFEMADAQFVGPDRTIFLGDASHAVTPFAAQGAA  313 (400)
T ss_pred             CCCCcccCCCCCCHHHHHHHh-cCCChHHHHHHhcC---CceeECcCcccCCCcceecCCEEEEecccccCCchhhhhHH
Confidence            1  111222222233444433 34555555443222   2345677766655565 569999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 010623          362 VALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFD  432 (506)
Q Consensus       362 ~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~  432 (506)
                      +||+||..|+++|...       ++..+|+.|+++|+|++..++..++.. +.+... .+.....|+..+.
T Consensus       314 ~aieDa~~La~~L~~~-------~~~~aL~~Ye~~R~~r~~~~~~~s~~~-~~~~~~-~~~~~~~r~~~~~  375 (400)
T PRK06475        314 MAIEDAAALAEALDSD-------DQSAGLKRFDSVRKERIAAVAKRGQLN-RFAYHA-TGIFALGRNMLFA  375 (400)
T ss_pred             HHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCC-CCHHHHHHHHHHh
Confidence            9999999999999631       246899999999999999999888744 444333 3445556776654

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=100.00  E-value=5e-40  Score=332.00  Aligned_cols=356  Identities=19%  Similarity=0.234  Sum_probs=232.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC--CcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP--DRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD  137 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~--~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  137 (506)
                      ++||+||||||+|+++|+.|+++|++|+|+||.+...  ...++..++++++++|+++|+++.+.... ....+..++.+
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~-~~~~~~~~~~~   80 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREG-LVHEGTEIAFD   80 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcC-ceecceEEeeC
Confidence            5899999999999999999999999999999997532  23345568999999999999999887743 34455666555


Q ss_pred             CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623          138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI  216 (506)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV  216 (506)
                      +......++  ..........+.+..+...|.+.+.+. ++.++++ +++.+.+.++....|++. .+|+..+++||+||
T Consensus        81 ~~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~~-g~~~~~~~~~v~~~~~~~~~~~V~~~-~~g~~~~i~adlvI  156 (390)
T TIGR02360        81 GQRFRIDLK--ALTGGKTVMVYGQTEVTRDLMEAREAA-GLTTVYDADDVRLHDLAGDRPYVTFE-RDGERHRLDCDFIA  156 (390)
T ss_pred             CEEEEEecc--ccCCCceEEEeCHHHHHHHHHHHHHhc-CCeEEEeeeeEEEEecCCCccEEEEE-ECCeEEEEEeCEEE
Confidence            543333333  111111112234668888999988877 4556566 577776533222235543 36765678899999


Q ss_pred             eecCCcccchhhccCCCCCC-----ccceeeEEEeccCCCCCCeeEEEecCCCcEEEEecCCC-eEEEEEEecCCC-CCC
Q 010623          217 VCDGCFSNLRRSLCNPKVDV-----PSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSN-EVRCLVDIPGQK-VPS  289 (506)
Q Consensus       217 ~AdG~~S~vR~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~-~~~  289 (506)
                      +|||.+|.+|++++......     ...+.++..   ..+.......+.+.+..+.++|+.++ ..+|++..+... .+.
T Consensus       157 GADG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (390)
T TIGR02360       157 GCDGFHGVSRASIPAEVLKEFERVYPFGWLGILS---ETPPVSHELIYSNHERGFALCSMRSATRSRYYVQVPLTDKVED  233 (390)
T ss_pred             ECCCCchhhHHhcCcccceeeeccCCcceEEEec---CCCCCCCceEEEeCCCceEEEeccCCCcceEEEEcCCCCChhh
Confidence            99999999999986533211     112223222   11112222344555666667777543 334666554322 333


Q ss_pred             CCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHH
Q 010623          290 ISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVI  369 (506)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~  369 (506)
                      +..+...+.+.+.+.    +.+.+.+... ........++......+|..|||+|+|||||.|+|+.|||+|+||+||.+
T Consensus       234 ~~~~~~~~~l~~~~~----~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~grvvLvGDAAH~~~P~~GQG~n~aieDA~~  308 (390)
T TIGR02360       234 WSDDRFWAELKRRLP----SEAAERLVTG-PSIEKSIAPLRSFVCEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVHY  308 (390)
T ss_pred             CChhHHHHHHHHhcC----chhhhhhccC-CccceeeeeHHhhccccCccCCEEEEEccccCCCCCcCCchhHHHHHHHH
Confidence            444444555544332    2222221111 11112334555566788999999999999999999999999999999999


Q ss_pred             HHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCc--hhHHHHHHHHHH
Q 010623          370 LRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPD--EARKEMRQACFD  432 (506)
Q Consensus       370 La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~--~~~~~~r~~~~~  432 (506)
                      |+++|.....    .+.+++|+.|+++|++++..++..|+.+.++++..++  +....++.++++
T Consensus       309 La~~L~~~~~----~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (390)
T TIGR02360       309 LYEALLEHYQ----EGSSAGIEGYSARALARVWKAERFSWWMTSLLHRFPDTDAFDQRIQQAELE  369 (390)
T ss_pred             HHHHHHHHhc----cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Confidence            9999986421    2356899999999999999999999999888775533  333344444443

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=100.00  E-value=2e-41  Score=339.50  Aligned_cols=337  Identities=24%  Similarity=0.299  Sum_probs=223.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhccccee-cceEEEEC-
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRV-FGYALFKD-  137 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~-~~~~~~~~-  137 (506)
                      ++||+||||||+|+++|+.|+++|++|+|+||++......++..++++++++|+++|+++.+.+...... ....++.. 
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~   80 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGI   80 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEET
T ss_pred             CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeeccc
Confidence            3799999999999999999999999999999999888888899999999999999999998877543221 22223322 


Q ss_pred             -Cce-----eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEE
Q 010623          138 -GNR-----TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELT  209 (506)
Q Consensus       138 -~~~-----~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~  209 (506)
                       +..     .............+....++|..|++.|.+.+.+. ++++.+++ ++++.++++++. +.+.+ .+|+..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-gv~i~~~~~v~~~~~d~~~~~-~~~~~~~~g~~~~  158 (356)
T PF01494_consen   81 SDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEER-GVDIRFGTRVVSIEQDDDGVT-VVVRDGEDGEEET  158 (356)
T ss_dssp             TTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHH-TEEEEESEEEEEEEEETTEEE-EEEEETCTCEEEE
T ss_pred             CCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhh-hhhheeeeecccccccccccc-cccccccCCceeE
Confidence             110     00001111112233446788999999999999988 49999885 999999988766 44444 4787778


Q ss_pred             EEcCeEEeecCCcccchhhccCCCCCCcc----ceeeEEEeccCCCC--CCeeEEEecCCCcEEEEecCC-CeEEEEEEe
Q 010623          210 AYAPLTIVCDGCFSNLRRSLCNPKVDVPS----CFVGLVLENCNLPF--ENHGHVVLADPSPILFYPISS-NEVRCLVDI  282 (506)
Q Consensus       210 i~a~~vV~AdG~~S~vR~~l~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~  282 (506)
                      ++||+||+|||.+|.+|+.++...+....    ....+... ..++.  .+...+...+.+.++++|..+ +...+.+..
T Consensus       159 i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  237 (356)
T PF01494_consen  159 IEADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFD-SDLSDPWEDHCFIYSPPSGGFAIIPLENGDRSRFVWFL  237 (356)
T ss_dssp             EEESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEE-CHSHTTTSCEEEEEEETTEEEEEEEETTTTEEEEEEEE
T ss_pred             EEEeeeecccCcccchhhhccccccCccccccccccccccc-cccccccccccccccccccceeEeeccCCccceEEEee
Confidence            99999999999999999999875332221    12222222 22331  122223333444567899988 434455544


Q ss_pred             cCCC-CCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhH
Q 010623          283 PGQK-VPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMT  361 (506)
Q Consensus       283 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n  361 (506)
                      +... ......+...+.+.+.+.+    ......... .......++.......+|.+|||+|+|||||.|+|++|||+|
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~GqG~n  312 (356)
T PF01494_consen  238 PFDESKEERPEEFSPEELFANLPE----IFGPDLLET-EIDEISAWPIPQRVADRWVKGRVLLIGDAAHAMDPFSGQGIN  312 (356)
T ss_dssp             ETTTTTCCSTHCHHHHHHHHHHHH----HHHTCHHHH-EEEEEEEEEEEEEEESSSEETTEEE-GGGTEEE-CCTSHHHH
T ss_pred             eccccccccccccccccccccccc----ccccccccc-ccccccccccccccccccccceeEEeccceeeecccccCCCC
Confidence            4222 1111222222222221111    111111111 223455666666678899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHH
Q 010623          362 VALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTL  407 (506)
Q Consensus       362 ~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~  407 (506)
                      +||+||..|++.|..+.+   +...+++|+.|+++|++++..++..
T Consensus       313 ~Ai~da~~La~~L~~~~~---g~~~~~~l~~Y~~~r~~~~~~~~~~  355 (356)
T PF01494_consen  313 MAIEDAAALAELLAAALK---GEASEEALKAYEQERRPRARKAVQF  355 (356)
T ss_dssp             HHHHHHHHHHHHHHHHHT---TSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999997643   2344689999999999999988764

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK08163 salicylate hydroxylase; Provisional

Probab=100.00  E-value=5.5e-39  Score=326.62  Aligned_cols=355  Identities=19%  Similarity=0.240  Sum_probs=239.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD  137 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  137 (506)
                      .++.||+||||||+||++|+.|+++|++|+|+||.+.....+.+..++++++++|+++|+++.+.... .....+.+++.
T Consensus         2 ~~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~-~~~~~~~~~~~   80 (396)
T PRK08163          2 TKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRA-VFTDHLTMMDA   80 (396)
T ss_pred             CCCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhc-cCCcceEEEeC
Confidence            34689999999999999999999999999999999877777778889999999999999998876533 23334444432


Q ss_pred             --CceeeeecCCcC-C--CCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEE
Q 010623          138 --GNRTQISYPLEK-F--HSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAY  211 (506)
Q Consensus       138 --~~~~~~~~~~~~-~--~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~  211 (506)
                        +.. ....+... .  ........++|..+.+.|.+.+.+.++++++++ +++++.+++++   +++.+.+|+  +++
T Consensus        81 ~~~~~-~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~v~~~~g~--~~~  154 (396)
T PRK08163         81 VDAEE-VVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG---VTVFDQQGN--RWT  154 (396)
T ss_pred             CCCCE-EEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc---eEEEEcCCC--EEe
Confidence              222 11122111 0  011122468999999999999988877888888 49999877663   455567776  367


Q ss_pred             cCeEEeecCCcccchhhccCCCCCC--ccceeeEEEeccCCCC---CCeeEEEecCCCcEEEEecCCCe-EEEEEEecCC
Q 010623          212 APLTIVCDGCFSNLRRSLCNPKVDV--PSCFVGLVLENCNLPF---ENHGHVVLADPSPILFYPISSNE-VRCLVDIPGQ  285 (506)
Q Consensus       212 a~~vV~AdG~~S~vR~~l~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~  285 (506)
                      ||+||+|||.+|.+|+.+.......  ...+.+.+ ...+.+.   .+....+.++++.++.+|+.++. .++++..+..
T Consensus       155 ad~vV~AdG~~S~~r~~~~g~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~~  233 (396)
T PRK08163        155 GDALIGCDGVKSVVRQSLVGDAPRVTGHVVYRAVI-DVDDMPEDLRINAPVLWAGPHCHLVHYPLRGGEQYNLVVTFHSR  233 (396)
T ss_pred             cCEEEECCCcChHHHhhccCCCCCccccEEEEEEE-eHHHCcchhccCccEEEEcCCceEEEEEecCCeEEEEEEEECCC
Confidence            9999999999999999884321111  11122222 1111211   12234556677788899998775 3444444332


Q ss_pred             CCCCC--CchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecC-CccCCCCCCCCcEEEEccCCCCCCCCcchhhHH
Q 010623          286 KVPSI--SNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPN-RSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTV  362 (506)
Q Consensus       286 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~  362 (506)
                      ....+  .... .+.+.+.+.. +.+.+...+...   ..+..+.. ...+..+|..|||+|+|||||.|+|++|||+|+
T Consensus       234 ~~~~~~~~~~~-~~~l~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~  308 (396)
T PRK08163        234 EQEEWGVKDGS-KEEVLSYFEG-IHPRPRQMLDKP---TSWKRWATADREPVAKWSTGRVTLLGDAAHPMTQYMAQGACM  308 (396)
T ss_pred             CCcccccCCCC-HHHHHHHHcC-CChHHHHHHhcC---CceeEccccCCCcccccccCcEEEEecccccCCcchhccHHH
Confidence            21111  1112 2223333332 333333332211   12222222 223457889999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 010623          363 ALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFD  432 (506)
Q Consensus       363 ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~  432 (506)
                      ||+||.+|++.|...     ..+++++|+.|+++|++++..++..++.+.++++..  .....+|+....
T Consensus       309 ai~Da~~La~~L~~~-----~~~~~~al~~y~~~R~~r~~~~~~~s~~~~~~~~~~--~~~~~~r~~~~~  371 (396)
T PRK08163        309 ALEDAVTLGKALEGC-----DGDAEAAFALYESVRIPRTARVVLSAREMGRIYHAK--GVERQVRNLLWK  371 (396)
T ss_pred             HHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhCCC--CHHHHHHHHHhh
Confidence            999999999999753     234678999999999999999999999999888754  345566775543

>PRK05868 hypothetical protein; Validated

Probab=100.00  E-value=5.1e-39  Score=322.42  Aligned_cols=352  Identities=17%  Similarity=0.133  Sum_probs=231.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC-Cc
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD-GN  139 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~-~~  139 (506)
                      .||+||||||+|+++|+.|+++|++|+|+||.+.....+.+..+.++++++|+++|+++.+.+.. ....+..+++. +.
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~-~~~~~~~~~~~~g~   80 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHK-TRIRGASFVDRDGN   80 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhc-cCccceEEEeCCCC
Confidence            38999999999999999999999999999999877666666678899999999999998886643 33445555443 32


Q ss_pred             eeeeecCCcCCC--CCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623          140 RTQISYPLEKFH--SDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI  216 (506)
Q Consensus       140 ~~~~~~~~~~~~--~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV  216 (506)
                      ............  .....+.+.|..|.+.|.+.+.  .++++++++ |++++++++   +|+++.++|++  ++||+||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~--~~v~i~~~~~v~~i~~~~~---~v~v~~~dg~~--~~adlvI  153 (372)
T PRK05868         81 ELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQ--PSVEYLFDDSISTLQDDGD---SVRVTFERAAA--REFDLVI  153 (372)
T ss_pred             EEeecccccccCCCCCCceEEEEHHHHHHHHHHhcc--CCcEEEeCCEEEEEEecCC---eEEEEECCCCe--EEeCEEE
Confidence            221111101111  1112346778889888876543  378898885 999987766   35566778874  5699999


Q ss_pred             eecCCcccchhhccCCCCCCc--cceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCCe-EEEEEEecCCC--CCCC
Q 010623          217 VCDGCFSNLRRSLCNPKVDVP--SCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNE-VRCLVDIPGQK--VPSI  290 (506)
Q Consensus       217 ~AdG~~S~vR~~l~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~--~~~~  290 (506)
                      +|||.+|.+|+++..+.....  .......+. ....+......++++++..+.++|..++. ...++.+....  .+..
T Consensus       154 gADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (372)
T PRK05868        154 GADGLHSNVRRLVFGPEEQFVKRLGTHAAIFTVPNFLELDYWQTWHYGDSTMAGVYSARNNTEARAALAFMDTELRIDYR  233 (372)
T ss_pred             ECCCCCchHHHHhcCCcccceeecceEEEEEEcCCCCCCCcceEEEecCCcEEEEEecCCCCceEEEEEEecCCcccccC
Confidence            999999999999865432211  111111211 11122222223345677778889988753 34344433221  1111


Q ss_pred             CchHHHHHHHHhcCC-CCC-hhhhHHHHhhhcCCCeEEec-CCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHH
Q 010623          291 SNGEMANYLKTVVAP-QIP-REIFHSFVAAVDGGNIKTMP-NRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDI  367 (506)
Q Consensus       291 ~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da  367 (506)
                      ..+...+.+.+.+.. .+. +.+.+.    +.......++ +.....++|.+|||+|+|||||+++|+.|||+|+||+||
T Consensus       234 ~~~~~~~~l~~~f~~~~w~~~~l~~~----~~~~~~~~~~~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqGa~~AleDa  309 (372)
T PRK05868        234 DTEAQFAELQRRMAEDGWVRAQLLHY----MRSAPDFYFDEMSQILMDRWSRGRVALVGDAGYCCSPLSGQGTSVALLGA  309 (372)
T ss_pred             ChHHHHHHHHHHHhhCCCchHHHHhh----cccCCceeeccceEEecCCCCCCCeeeeecccccCCCccCccHHHHHHHH
Confidence            223334445444431 122 333322    2211112233 444456899999999999999999999999999999999


Q ss_pred             HHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 010623          368 VILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQAC  430 (506)
Q Consensus       368 ~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~  430 (506)
                      +.|++.|...     ..+++++|+.||+..||+..+.+.........|... ++...++|+..
T Consensus       310 ~~La~~L~~~-----~~~~~~al~~ye~~~~~~~~~~q~~~~~~~~~~~p~-~~~~~~~~~~~  366 (372)
T PRK05868        310 YILAGELKAA-----GDDYQLGFANYHAEFHGFVERNQWLVSDNIPGGAPI-PQEEFERIVHS  366 (372)
T ss_pred             HHHHHHHHhc-----CCCHHHHHHHHHHHHhHHHHHhhhhhhccCCcccCC-CHHHHHHhhcc
Confidence            9999999763     134789999999999999998888777666666654 56655666543

>PRK07538 hypothetical protein; Provisional

Probab=100.00  E-value=6.5e-39  Score=327.17  Aligned_cols=337  Identities=20%  Similarity=0.216  Sum_probs=224.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      +||+||||||+||++|+.|+++|++|+|+||.+...+...+..+.+++++.|+++|+++.+.... .+...+.+++....
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~-~~~~~~~~~~~~g~   79 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIG-IRTRELAYFNRHGQ   79 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhC-CCCcceEEEcCCCC
Confidence            48999999999999999999999999999999877666778889999999999999998876633 23344555543222


Q ss_pred             eeeecCCcC-CCCCcccccccchHHHHHHHHHHHc-CCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEE
Q 010623          141 TQISYPLEK-FHSDVAGRGFHNGRFVQRLREKAAS-LPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTI  216 (506)
Q Consensus       141 ~~~~~~~~~-~~~~~~~~~i~~~~l~~~L~~~~~~-~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV  216 (506)
                      .....+... .......+.++|..|.+.|.+.+.+ .+.+.+++++ |+++.++++++. +.+.+ .+|+..+++||+||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~-~~~~~~~~g~~~~~~adlvI  158 (413)
T PRK07538         80 RIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV-VFLGDRAGGDLVSVRGDVLI  158 (413)
T ss_pred             EEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE-EEEeccCCCccceEEeeEEE
Confidence            111111110 0111123468999999999999866 3556688774 999988766533 33333 34545578899999


Q ss_pred             eecCCcccchhhccCCCCCCccceeeEEEecc--CCCC--CCeeEEEec-CCCcEEEEecCCC-------eEEEEEEecC
Q 010623          217 VCDGCFSNLRRSLCNPKVDVPSCFVGLVLENC--NLPF--ENHGHVVLA-DPSPILFYPISSN-------EVRCLVDIPG  284 (506)
Q Consensus       217 ~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~-~~~~~~~~p~~~~-------~~~~~~~~~~  284 (506)
                      +|||.+|.+|++++.....  ..+.+...+..  ..+.  ......+++ +++.+.+||+.++       ..+|.+..+.
T Consensus       159 gADG~~S~vR~~l~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~g~~~~~w~~~~~~  236 (413)
T PRK07538        159 GADGIHSAVRAQLYPDEGP--PRWNGVMMWRGVTEAPPFLTGRSMVMAGHLDGKLVVYPISEPVDADGRQLINWVAEVRV  236 (413)
T ss_pred             ECCCCCHHHhhhhcCCCCC--CcccceEEEEEeecCccccCCCcEEEEcCCCCEEEEEECCCCcccCCceEEEEEEEEcC
Confidence            9999999999999754321  22333332211  1111  111223343 3567888998753       4566665543


Q ss_pred             CC-----CCCCCchHHHHHHHHhcCCCCCh--hhhHHHHhhhcCCCeEEecCCcc-CCCCCCCCcEEEEccCCCCCCCCc
Q 010623          285 QK-----VPSISNGEMANYLKTVVAPQIPR--EIFHSFVAAVDGGNIKTMPNRSM-PAAPYPTPGALLMGDAFNMRHPLT  356 (506)
Q Consensus       285 ~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~rv~LvGDAAh~~~P~~  356 (506)
                      ..     ...+..+...+.+.+.+..+..+  .+.+.+..   ...+..+|+... +.++|..|||+|+|||||.|+|++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~p~~~~~~~~~w~~grv~LvGDAAH~~~P~~  313 (413)
T PRK07538        237 DDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPALIRA---AEAIYEYPMVDRDPLPRWTRGRVTLLGDAAHPMYPVG  313 (413)
T ss_pred             CccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHHHhc---CcceeeccccccCCCCcccCCcEEEEeeccCcCCCCC
Confidence            21     11222222222222222221111  12222211   234455666543 467899999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHH
Q 010623          357 GGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGA  410 (506)
Q Consensus       357 GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~  410 (506)
                      |||+|+||+||..|++.|...      .+.+++|+.|+++|++++..++..++.
T Consensus       314 GqG~~~Ai~Da~~La~~L~~~------~~~~~aL~~Ye~~R~~~~~~~~~~s~~  361 (413)
T PRK07538        314 SNGASQAILDARALADALAAH------GDPEAALAAYEAERRPATAQIVLANRL  361 (413)
T ss_pred             cccHHHHHHHHHHHHHHHHhc------CCHHHHHHHHHHHhhHHHHHHHHHhhh
Confidence            999999999999999999863      126789999999999999998877765

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=100.00  E-value=3.4e-38  Score=322.14  Aligned_cols=344  Identities=20%  Similarity=0.218  Sum_probs=226.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC-CcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccce---ecceE-EE
Q 010623           61 ADVIVVGAGVAGAALANTLAKDG-RRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQR---VFGYA-LF  135 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G-~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~---~~~~~-~~  135 (506)
                      .+|+||||||+||++|+.|+++| ++|+|+||.+.....+.+..+.++++++|+++|+.+.+.+.....   ..... .+
T Consensus         1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~   80 (414)
T TIGR03219         1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEW   80 (414)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEE
Confidence            37999999999999999999998 699999999877666677789999999999999988776643211   11111 11


Q ss_pred             ECCceee-eecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcC
Q 010623          136 KDGNRTQ-ISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAP  213 (506)
Q Consensus       136 ~~~~~~~-~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~  213 (506)
                      .++.... ....   .........++|..|.+.|.+.+..   ..++++ +|+++.+++++   +++..++|++  ++||
T Consensus        81 ~~~~~~~~~~~~---~~~~~~~~~i~R~~l~~~L~~~~~~---~~v~~~~~v~~i~~~~~~---~~v~~~~g~~--~~ad  149 (414)
T TIGR03219        81 RNGSDASYLGAT---IAPGVGQSSVHRADFLDALLKHLPE---GIASFGKRATQIEEQAEE---VQVLFTDGTE--YRCD  149 (414)
T ss_pred             EecCccceeeee---ccccCCcccCCHHHHHHHHHHhCCC---ceEEcCCEEEEEEecCCc---EEEEEcCCCE--EEee
Confidence            2221111 1100   0011112357899999999987743   345566 59999887764   5566677864  6699


Q ss_pred             eEEeecCCcccchhhccCC--CCCCccc------eeeEEEecc--------CCCC--CCeeEEEecCCCcEEEEecCCCe
Q 010623          214 LTIVCDGCFSNLRRSLCNP--KVDVPSC------FVGLVLENC--------NLPF--ENHGHVVLADPSPILFYPISSNE  275 (506)
Q Consensus       214 ~vV~AdG~~S~vR~~l~~~--~~~~~~~------~~~~~~~~~--------~~~~--~~~~~~~~~~~~~~~~~p~~~~~  275 (506)
                      +||+|||.+|.+|+.+...  .......      +.+++....        ..+.  .+...+++++++.++.||+.+++
T Consensus       150 ~vVgADG~~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~  229 (414)
T TIGR03219       150 LLIGADGIKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQMYLGLDGHILTFPVRQGR  229 (414)
T ss_pred             EEEECCCccHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhccccccccccccceEEEcCCCeEEEEECCCCc
Confidence            9999999999999988531  1111112      222221100        0000  11234667788888899998887


Q ss_pred             EEE-EEEecCC--CC------CCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCc-cCCCCCCCCcEEEE
Q 010623          276 VRC-LVDIPGQ--KV------PSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRS-MPAAPYPTPGALLM  345 (506)
Q Consensus       276 ~~~-~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~rv~Lv  345 (506)
                      ..+ .+.....  ..      ..+..+...+.+.+.+ ..+++.+.+.+... ...  ..+++.. ...++|.+|||+|+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~v~~~~~~~-~~~--~~~~~~~~~~~~~w~~grv~Li  305 (414)
T TIGR03219       230 LINVVAFISDRSQPKPTWPSDTPWVREATQREMLDAF-AGWGDAARALLECI-PAP--TLWALHDLAELPGYVHGRVALI  305 (414)
T ss_pred             EEEEEEEEcCcccccCCCCCCCcccCccCHHHHHHHh-cCCCHHHHHHHHhC-CCC--CceeeeecccccceeeCcEEEE
Confidence            433 3332211  00      1121222233333333 34555555443322 221  1233222 24578999999999


Q ss_pred             ccCCCCCCCCcchhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchh
Q 010623          346 GDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEA  422 (506)
Q Consensus       346 GDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~  422 (506)
                      |||||.|+|+.|||+|+||+||..|++.|....  ..+.+++++|+.|+++|+|++..++..|+.+.+++... ++.
T Consensus       306 GDAAH~m~P~~GqGa~~AieDA~~La~~L~~~~--~~~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~-~~~  379 (414)
T TIGR03219       306 GDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTE--LEAGDLPALLEAYDDVRRPRACRVQRTSREAGELYELR-DPA  379 (414)
T ss_pred             EcccCCCCCCcCcchHhHHHHHHHHHHHHHhhc--cCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC-Chh
Confidence            999999999999999999999999999998642  12356789999999999999999999999998888765 443

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK07236 hypothetical protein; Provisional

Probab=100.00  E-value=2.8e-37  Score=312.50  Aligned_cols=334  Identities=20%  Similarity=0.182  Sum_probs=216.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC-CcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP-DRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD  137 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~-~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  137 (506)
                      +..+|+||||||+||++|+.|+++|++|+|+||.+... ....|..+++++++.|+++|+.+.. ... .......++..
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~-~~~-~~~~~~~~~~~   82 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPA-DIG-VPSRERIYLDR   82 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccc-ccc-cCccceEEEeC
Confidence            35899999999999999999999999999999987532 3445567899999999999998654 222 22223333332


Q ss_pred             CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623          138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI  216 (506)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV  216 (506)
                      ........+..       ...+.+..+.+.|.+.+   +++++++++ |+++++++++   |++..++|+  +++||+||
T Consensus        83 ~g~~~~~~~~~-------~~~~~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~---v~v~~~~g~--~~~ad~vI  147 (386)
T PRK07236         83 DGRVVQRRPMP-------QTQTSWNVLYRALRAAF---PAERYHLGETLVGFEQDGDR---VTARFADGR--RETADLLV  147 (386)
T ss_pred             CCCEeeccCCC-------ccccCHHHHHHHHHHhC---CCcEEEcCCEEEEEEecCCe---EEEEECCCC--EEEeCEEE
Confidence            22111111110       11245667777777654   456788885 9999887764   556667786  46799999


Q ss_pred             eecCCcccchhhccCCCCCCccc---eeeEEEeccCCCC------CCeeEEEecCCCcEEEEecCCC---------eEEE
Q 010623          217 VCDGCFSNLRRSLCNPKVDVPSC---FVGLVLENCNLPF------ENHGHVVLADPSPILFYPISSN---------EVRC  278 (506)
Q Consensus       217 ~AdG~~S~vR~~l~~~~~~~~~~---~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~p~~~~---------~~~~  278 (506)
                      +|||.+|.+|+++..........   +.+++. ...++.      ......+.++++.++.||+.+.         ..+|
T Consensus       148 gADG~~S~vR~~l~~~~~~~~~g~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (386)
T PRK07236        148 GADGGRSTVRAQLLPDVRPTYAGYVAWRGLVD-EAALPPEARAALRDRFTFQLGPGSHILGYPVPGEDGSTEPGKRRYNW  226 (386)
T ss_pred             ECCCCCchHHHHhCCCCCCCcCCeEEEEEecc-hHHcCchhhhhcccceEEEEcCCceEEEEECCCCCCCcCCCCcEEEE
Confidence            99999999999984322111111   122221 111221      1122344566677888887642         2446


Q ss_pred             EEEecCCCC---C-----------------CCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCC
Q 010623          279 LVDIPGQKV---P-----------------SISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYP  338 (506)
Q Consensus       279 ~~~~~~~~~---~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (506)
                      .+..+.+..   .                 ....++..+.+.+.....+++.+.+.+....   ....+++.....++|.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  303 (386)
T PRK07236        227 VWYRNAPAGEELDELLTDRDGTRRPFSVPPGALRDDVLAELRDDAAELLAPVFAELVEATA---QPFVQAIFDLEVPRMA  303 (386)
T ss_pred             EEEecCCCccchhhhcccCCCccccCCCCccccCHHHHHHHHHHHHHhcCHHHHHHHhhCc---CchhhhhhcccCcccc
Confidence            655442210   0                 0012223334433322334444444332221   1222344444567899


Q ss_pred             CCcEEEEccCCCCCCCCcchhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCC
Q 010623          339 TPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSAS  418 (506)
Q Consensus       339 ~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~  418 (506)
                      .|||+|+|||||.|+|+.|||+|+||+||..|++.|....     .+++++|+.|+++|++++..++..++.+...+...
T Consensus       304 ~grv~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~~-----~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~  378 (386)
T PRK07236        304 FGRVALLGDAAFVARPHTAAGVAKAAADAVALAEALAAAA-----GDIDAALAAWEAERLAVGAAIVARGRRLGARLQAQ  378 (386)
T ss_pred             cCcEEEEecccccCCCcchhhHHHHHHHHHHHHHHHHhcc-----cchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999998642     23678999999999999999999998877766543

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=100.00  E-value=2.8e-36  Score=314.27  Aligned_cols=347  Identities=16%  Similarity=0.132  Sum_probs=221.3

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC-CCcc---cccccccchHHHHHHhCch--hHHhhcccceec
Q 010623           57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE-PDRI---VGELLQPGGYLKLIELGLE--DCVEQIDAQRVF  130 (506)
Q Consensus        57 ~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~-~~~~---~g~~l~~~~~~~l~~~g~~--~~~~~~~~~~~~  130 (506)
                      +.+..+|+||||||+||++|+.|+++|++|+|+||++.. ....   .+..++++++++|+++|++  +.+.+.......
T Consensus        78 ~~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~  157 (668)
T PLN02927         78 KKKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGD  157 (668)
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCcccc
Confidence            456799999999999999999999999999999998632 1111   3467999999999999863  444443322111


Q ss_pred             ceE-EEE--CCceeeeecCCcC---CCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeC
Q 010623          131 GYA-LFK--DGNRTQISYPLEK---FHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTK  203 (506)
Q Consensus       131 ~~~-~~~--~~~~~~~~~~~~~---~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~  203 (506)
                      ... ..+  .+.. ...++...   ....+..+.++|..|.+.|.+.+..   ..++++ +|+++++++++   |++.+.
T Consensus       158 ~i~~~~d~~~G~~-~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~---~~i~~g~~V~~I~~~~d~---VtV~~~  230 (668)
T PLN02927        158 RINGLVDGISGSW-YVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGE---DVIRNESNVVDFEDSGDK---VTVVLE  230 (668)
T ss_pred             eeeeeeecCCCce-EeeccccccccccCCCeEEEEeHHHHHHHHHhhCCC---CEEEcCCEEEEEEEeCCE---EEEEEC
Confidence            111 111  1211 11221100   0111334678999999999876532   235666 59999888774   456667


Q ss_pred             CccEEEEEcCeEEeecCCcccchhhccCCCCCCccceeeEEEeccCCCC---CCeeEEEecCCCcEEEEecCCCeEEEEE
Q 010623          204 AGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPF---ENHGHVVLADPSPILFYPISSNEVRCLV  280 (506)
Q Consensus       204 ~G~~~~i~a~~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~~~~~~~~~~  280 (506)
                      +|++  +++|+||+|||++|.+|+.+..........+.++.......+.   ......+.+...++..++..+++.+|+.
T Consensus       231 dG~t--i~aDlVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~~~~p~~~~~~~~~~~~G~~~~~v~~~v~~g~~~~~~  308 (668)
T PLN02927        231 NGQR--YEGDLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFIPADIESVGYRVFLGHKQYFVSSDVGGGKMQWYA  308 (668)
T ss_pred             CCCE--EEcCEEEECCCCCcHHHHHhcCCCCCcccceEEEEEEcCCCcccccccceEEEEcCCeEEEEEcCCCCeEEEEE
Confidence            7764  5699999999999999999854332221122222111111111   1112344566667777788777666655


Q ss_pred             EecCCCCCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCcc-CCCCCCCCcEEEEccCCCCCCCCcchh
Q 010623          281 DIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSM-PAAPYPTPGALLMGDAFNMRHPLTGGG  359 (506)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~rv~LvGDAAh~~~P~~GqG  359 (506)
                      ..+.........+...+.+.+.+. .+.+.+.+.+. ..+...+..+++... +..+|..|||+|+|||||.|+|+.|||
T Consensus       309 f~~~p~~~~~~~~~~~e~L~~~f~-~w~~~v~elI~-~t~~~~i~~~~iyd~~p~~~W~~grVvLiGDAAH~~~P~~GqG  386 (668)
T PLN02927        309 FHEEPAGGADAPNGMKKRLFEIFD-GWCDNVLDLLH-ATEEDAILRRDIYDRSPGFTWGKGRVTLLGDSIHAMQPNMGQG  386 (668)
T ss_pred             EEECCccccccchhHHHHHHHHhc-cCCHHHHHHHH-hCccccceeeeEEeccCCCccccCcEEEEcCccCCCCCccccc
Confidence            433211111123345555555443 45556555443 223333444444433 335799999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhhcCC----CCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 010623          360 MTVALSDIVILRNLLRHLSN----LNDAPALCNYLESFYTLRKPVASTINTLAGALYQV  414 (506)
Q Consensus       360 ~n~ai~Da~~La~~L~~~~~----~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~  414 (506)
                      +|+||+||..|++.|.....    .+.+..++++|+.|+++|++++..++..++.....
T Consensus       387 ~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R~~rv~~i~~~ar~a~~~  445 (668)
T PLN02927        387 GCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESRRLRVAIIHAMARMAAIM  445 (668)
T ss_pred             hHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999986521    11234578999999999999999998876654333

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=5.7e-34  Score=271.55  Aligned_cols=305  Identities=19%  Similarity=0.243  Sum_probs=176.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecce-EEEE-C
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGY-ALFK-D  137 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~-~~~~-~  137 (506)
                      +.+|+|||||++||++|++|+|.|++|+|+|++..+...+.+..+.-+++++|+.+|+.+.+.+... +..+. .... .
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai~~~e~i~~~gi-p~~~~v~~~~~s   80 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAIGLKEQIREQGI-PLGGRVLIHGDS   80 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceeehhhHHHHHHHcccHHHHHHhcC-cccceeeeecCC
Confidence            3689999999999999999999999999999987776666666777779999999999988887543 33333 2222 2


Q ss_pred             Cc-eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-----eEEEEEeeCCeEEEEEEEeCCccEEEEE
Q 010623          138 GN-RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-----TVTSLLEEKGTIKGVQYKTKAGEELTAY  211 (506)
Q Consensus       138 ~~-~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-----~v~~~~~~~~~v~~v~v~~~~G~~~~i~  211 (506)
                      |+ .....++..    ...-..|.|..+.+.+...+...+.+.+...     ....++....   ...+...+|.  +++
T Consensus        81 g~~~~~~~~~~~----~~~i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~~~~---~~~v~l~~g~--~~~  151 (420)
T KOG2614|consen   81 GKEVSRILYGEP----DEYILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIETLGK---KLVVHLSDGT--TVK  151 (420)
T ss_pred             CCeeEecccCCc----hHHHHHHHHHHHHHHHHHhhcCCCeeecccccccccccceeeeccc---ccceecCCCc--EEE
Confidence            33 222223211    1112234555555555545544555555532     1222222211   2345567776  467


Q ss_pred             cCeEEeecCCcccchhhccCCCC--CCccceeeEEEeccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecC----C
Q 010623          212 APLTIVCDGCFSNLRRSLCNPKV--DVPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPG----Q  285 (506)
Q Consensus       212 a~~vV~AdG~~S~vR~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~----~  285 (506)
                      +|++|+|||++|.||+.++...+  ...+.++|+.+.....+..  ..++...+..+..-|.+.....+++....    .
T Consensus       152 ~dlligCDGa~S~Vr~~l~~~~p~~~~~~ayrg~~~~~~~~~~~--~~vf~~~~~~~~~~~~~~~~~~~y~~~~k~~t~t  229 (420)
T KOG2614|consen  152 GDLLIGCDGAYSKVRKWLGFKEPRYDGSQAYRGLGFIPNGIPFG--KKVFAIYGNGLHSWPRPGFHLIAYWFLDKSLTST  229 (420)
T ss_pred             eeEEEEcCchHHHHHHHhcccCCcceeEEEEeeeeeccCCCCcc--cceecccCCeEEEcccCCceEEEEEeecCCcccc
Confidence            99999999999999999987533  2334556665443333331  22233333333333333333233332210    0


Q ss_pred             CCCCC-CchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCcc-----CCCCCCCCcEEEEccCCCCCCCCcchh
Q 010623          286 KVPSI-SNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSM-----PAAPYPTPGALLMGDAFNMRHPLTGGG  359 (506)
Q Consensus       286 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~rv~LvGDAAh~~~P~~GqG  359 (506)
                      ..+.. .++.......+. ...+++.+.+.+ +.++...+...++..+     ...+...++|+|+|||||+|.|+.|||
T Consensus       230 ~~~~~~e~~~l~~~~~~v-~~~~~en~~d~i-~~~~~e~i~~t~l~~r~p~~~i~~~~s~~~vvL~GDAaHaM~Pf~GQG  307 (420)
T KOG2614|consen  230 DFAPFDEPEKLKKTSLEV-VDFFPENFPDII-ELTGEESIVRTPLADRPPWPLISVKCSPGNVVLLGDAAHAMTPFLGQG  307 (420)
T ss_pred             cccCcCCHHHHhhhHHHH-HHHhHHhHHHHH-HhcChHHhhhchhhhcCCcCeeeeccCCCeEEEecccccccCCccccc
Confidence            01111 122222221111 112333333222 2222222332222222     223345568999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhhcC
Q 010623          360 MTVALSDIVILRNLLRHLS  378 (506)
Q Consensus       360 ~n~ai~Da~~La~~L~~~~  378 (506)
                      +|+|++|+..|+++|+++.
T Consensus       308 ~n~a~ED~~VLa~~L~~~~  326 (420)
T KOG2614|consen  308 GNCAFEDCVVLAECLDEAI  326 (420)
T ss_pred             ccchHHHHHHHHHHHHHhc
Confidence            9999999999999999864

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=100.00  E-value=4.2e-32  Score=276.74  Aligned_cols=345  Identities=18%  Similarity=0.154  Sum_probs=217.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD  137 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  137 (506)
                      .+++||+||||||+|+++|+.|+++|++|+|+||.+. ....+|..++.   +.++++|+.+.+..   ....++.++..
T Consensus        37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~-~~k~cgg~i~~---~~l~~lgl~~~~~~---~~i~~~~~~~p  109 (450)
T PLN00093         37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD-NAKPCGGAIPL---CMVGEFDLPLDIID---RKVTKMKMISP  109 (450)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC-CCCCccccccH---hHHhhhcCcHHHHH---HHhhhheEecC
Confidence            3579999999999999999999999999999999853 44567877753   56777888765543   23334444432


Q ss_pred             CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeC--CeEEEEEEEeC-----CccEEEE
Q 010623          138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEK--GTIKGVQYKTK-----AGEELTA  210 (506)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~--~~v~~v~v~~~-----~G~~~~i  210 (506)
                      ... ...++. ..........++|..|++.|.+.+.+. |++++.++++++..++  +....|++...     +|+..++
T Consensus       110 ~~~-~v~~~~-~~~~~~~~~~v~R~~~d~~L~~~A~~~-Ga~~~~~~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v  186 (450)
T PLN00093        110 SNV-AVDIGK-TLKPHEYIGMVRREVLDSFLRERAQSN-GATLINGLFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTL  186 (450)
T ss_pred             Cce-EEEecc-cCCCCCeEEEecHHHHHHHHHHHHHHC-CCEEEeceEEEEEeccCCCCcEEEEEEeccccccCCCccEE
Confidence            221 222221 011112223589999999999999987 7888877887776422  22223444332     1544568


Q ss_pred             EcCeEEeecCCcccchhhccCCCCCCccceeeEEEeccCCC------CCCeeEEEec----CCCcEEEEecCCCeEEEEE
Q 010623          211 YAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLP------FENHGHVVLA----DPSPILFYPISSNEVRCLV  280 (506)
Q Consensus       211 ~a~~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~  280 (506)
                      +||+||+|||.+|.+|+.++.+...   ...++... ...+      .++...++++    ++++.|+||..+. .++.+
T Consensus       187 ~a~~VIgADG~~S~vrr~lg~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~p~~Y~WifP~g~~-~~VG~  261 (450)
T PLN00093        187 EVDAVIGADGANSRVAKDIDAGDYD---YAIAFQER-IKIPDDKMEYYEDLAEMYVGDDVSPDFYGWVFPKCDH-VAVGT  261 (450)
T ss_pred             EeCEEEEcCCcchHHHHHhCCCCcc---eeEEEEEE-EeCChhhccccCCeEEEEeCCCCCCCceEEEEECCCc-EEEEE
Confidence            8999999999999999999875321   11222111 1111      1233455655    3467899999853 45444


Q ss_pred             EecCCCCCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhh
Q 010623          281 DIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGM  360 (506)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~  360 (506)
                      .....   ..+..+..+.+.+.....+.         ..+.......++......++..+|++|+|||||.++|++|+|+
T Consensus       262 g~~~~---~~~~~~~~~~l~~~~~~~l~---------~~~~~~~~~~~ip~~~~~~~~~~~vlLvGDAAg~v~P~tGeGI  329 (450)
T PLN00093        262 GTVVN---KPAIKKYQRATRNRAKDKIA---------GGKIIRVEAHPIPEHPRPRRVRGRVALVGDAAGYVTKCSGEGI  329 (450)
T ss_pred             EEccC---CCChHHHHHHHHHHhhhhcC---------CCeEEEEEEEEcccccccceeCCCcEEEeccccCCCccccccH
Confidence            32111   11122222233221110000         0000112223333334567788999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 010623          361 TVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQAC  430 (506)
Q Consensus       361 n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~  430 (506)
                      +.||.++..+|+.+.+....++.......|+.|++..+.........+..+.++|..+ ++....+.+.+
T Consensus       330 ~~Am~sg~~AAe~i~~~~~~g~~~~s~~~L~~Y~~~~~~~~g~~~~~~~~l~~~~~~~-~~~~~~~~~~~  398 (450)
T PLN00093        330 YFAAKSGRMCAEAIVEGSENGTRMVDEADLREYLRKWDKKYWPTYKVLDILQKVFYRS-NPAREAFVEMC  398 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHh
Confidence            9999999999999986532211111235689999988887777788888888888764 66555555444

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=100.00  E-value=3.8e-31  Score=267.64  Aligned_cols=324  Identities=20%  Similarity=0.259  Sum_probs=208.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc-
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN-  139 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~-  139 (506)
                      |||+||||||+|+++|+.|++.|++|+|+|+.. .....++..+++   +.++++++.+.+..   ....+..++.... 
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~-~~~~~cg~~i~~---~~l~~l~i~~~~~~---~~~~~~~~~~~~~~   73 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERAL-SNIKPCGGAIPP---CLIEEFDIPDSLID---RRVTQMRMISPSRV   73 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCC-CCcCcCcCCcCH---hhhhhcCCchHHHh---hhcceeEEEcCCCc
Confidence            699999999999999999999999999999983 334567777775   45677888765543   2344555554322 


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEe----CCccEEEEEcCeE
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKT----KAGEELTAYAPLT  215 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~----~~G~~~~i~a~~v  215 (506)
                      ......+.    .......++|..|++.|.+.+.+. +++++.++|+++..+++.+. +++.+    .+|+..+++||+|
T Consensus        74 ~~~~~~~~----~~~~~~~~~r~~fd~~L~~~a~~~-G~~v~~~~v~~v~~~~~~~~-v~~~~~~~~~~~~~~~i~a~~V  147 (388)
T TIGR02023        74 PIKVTIPS----EDGYVGMVRREVFDSYLRERAQKA-GAELIHGLFLKLERDRDGVT-LTYRTPKKGAGGEKGSVEADVV  147 (388)
T ss_pred             eeeeccCC----CCCceEeeeHHHHHHHHHHHHHhC-CCEEEeeEEEEEEEcCCeEE-EEEEeccccCCCcceEEEeCEE
Confidence            21111110    111122589999999999999887 77887778999887776543 55543    2344457889999


Q ss_pred             EeecCCcccchhhccCCCCCCccceeeEE--Eecc--CC-CCCCeeEEEec----CCCcEEEEecCCCeEEEEEEecCCC
Q 010623          216 IVCDGCFSNLRRSLCNPKVDVPSCFVGLV--LENC--NL-PFENHGHVVLA----DPSPILFYPISSNEVRCLVDIPGQK  286 (506)
Q Consensus       216 V~AdG~~S~vR~~l~~~~~~~~~~~~~~~--~~~~--~~-~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~  286 (506)
                      |+|||.+|.+|+.++.+....  ...++.  +...  .. ..++...++++    ++++.|++|.++. .++......  
T Consensus       148 I~AdG~~S~v~r~lg~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~wv~P~~~~-~~vg~~~~~--  222 (388)
T TIGR02023       148 IGADGANSPVAKELGLPKNLP--RVIAYQERIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFPKGDH-IAVGTGTGT--  222 (388)
T ss_pred             EECCCCCcHHHHHcCCCCCCc--EEEEEEEEecCCchhcccCCCeEEEEECCCcCCCceEEEeeCCCe-eEEeEEECC--
Confidence            999999999999998753211  111221  1101  01 12233444543    4468899999753 444443211  


Q ss_pred             CCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHH
Q 010623          287 VPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSD  366 (506)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~D  366 (506)
                       ...+.++..+.+.+...  +...      +... ......|.  ....+|..+|++++|||||.++|++|+|++.||++
T Consensus       223 -~~~~~~~~~~~l~~~~~--~~~~------~~~~-~~~~~ip~--~~~~~~~~~~v~lvGDAAg~v~P~tG~GI~~A~~s  290 (388)
T TIGR02023       223 -HGFDAKQLQANLRRRAG--LDGG------QTIR-REAAPIPM--KPRPRWDFGRAMLVGDAAGLVTPASGEGIYFAMKS  290 (388)
T ss_pred             -CCCCHHHHHHHHHHhhC--CCCc------eEee-eeeEeccc--cccccccCCCEEEEeccccCcCCcccccHHHHHHH
Confidence             11122333333333211  1000      0000 01112233  34567888999999999999999999999999999


Q ss_pred             HHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCC
Q 010623          367 IVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSAS  418 (506)
Q Consensus       367 a~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~  418 (506)
                      |..+++.+.+....++    .+.|+.|+++.+..........+.+..++..+
T Consensus       291 g~~aa~~i~~~l~~~~----~~~L~~Y~~~~~~~~~~~~~~~~~~~~~~~~~  338 (388)
T TIGR02023       291 GQMAAQAIAEYLQNGD----ATDLRHYERKFMKLYGTTFRVLRVLQMVYYRS  338 (388)
T ss_pred             HHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            9999999987643222    46799999999888766666677776776544

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>TIGR02028 ChlP geranylgeranyl reductase

Probab=100.00  E-value=8.5e-31  Score=264.93  Aligned_cols=346  Identities=17%  Similarity=0.170  Sum_probs=211.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      +||+||||||+|+++|+.|+++|++|+|+||.+.. ...|+..+..   +.++++|+.+.+..   ....+..++.....
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~-~~~cg~~i~~---~~l~~~g~~~~~~~---~~i~~~~~~~p~~~   73 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDN-AKPCGGAIPL---CMVDEFALPRDIID---RRVTKMKMISPSNI   73 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCC-CCCccccccH---hhHhhccCchhHHH---hhhceeEEecCCce
Confidence            58999999999999999999999999999998543 4557776653   56778888755433   12333444433221


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEe--eCCeEEEEEEEeCC-----ccEEEEEcC
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLE--EKGTIKGVQYKTKA-----GEELTAYAP  213 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~--~~~~v~~v~v~~~~-----G~~~~i~a~  213 (506)
                       ...+... .........++|..|++.|.+.+.+. |++++.++++++..  +.+...+|++...+     |+..+++|+
T Consensus        74 -~~~~~~~-~~~~~~~~~v~R~~~d~~L~~~a~~~-G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~  150 (398)
T TIGR02028        74 -AVDIGRT-LKEHEYIGMLRREVLDSFLRRRAADA-GATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVD  150 (398)
T ss_pred             -EEEeccC-CCCCCceeeeeHHHHHHHHHHHHHHC-CcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccEEEeC
Confidence             1222110 01111223589999999999999987 78888888777653  22333345554333     555578999


Q ss_pred             eEEeecCCcccchhhccCCCCCCccceeeEEE-eccCCC-CCCeeEEEec----CCCcEEEEecCCCeEEEEEEecCCCC
Q 010623          214 LTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVL-ENCNLP-FENHGHVVLA----DPSPILFYPISSNEVRCLVDIPGQKV  287 (506)
Q Consensus       214 ~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~  287 (506)
                      +||+|||.+|.+|+.++.+.......+...+. ...... .++...++++    ++++.|+||.++. .++.+....   
T Consensus       151 ~VIgADG~~S~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~gY~WifP~~~~-~~VG~g~~~---  226 (398)
T TIGR02028       151 AVIGADGANSRVAKEIDAGDYSYAIAFQERIRLPDEKMAYYDDLAEMYVGDDVSPDFYGWVFPKCDH-VAVGTGTVA---  226 (398)
T ss_pred             EEEECCCcchHHHHHhCCCCcceEEEEEEEeeCChhhcccCCCeEEEEeCCCCCCCceEEEEECCCe-EEEEEEeCC---
Confidence            99999999999999998653211111111110 000011 1233455654    4468999999853 444443211   


Q ss_pred             CCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHH
Q 010623          288 PSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDI  367 (506)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da  367 (506)
                      .....+++.+.+...    ......    . .....+...++.....+++..+|++|+|||||.++|++|+|++.||+++
T Consensus       227 ~~~~~~~~~~~l~~~----~~~~~~----~-~~~~~~~~~~ip~~~~~~~~~~~~llvGDAAg~v~P~tGeGI~~A~~sg  297 (398)
T TIGR02028       227 AKPEIKRLQSGIRAR----AAGKVA----G-GRIIRVEAHPIPEHPRPRRVVGRVALVGDAAGYVTKCSGEGIYFAAKSG  297 (398)
T ss_pred             CCccHHHHHHhhhhh----hhhccC----C-CcEEEEEEEeccccccccEECCCEEEEEcCCCCCCcccccchHHHHHHH
Confidence            111112222222111    000000    0 0001122222222234567789999999999999999999999999999


Q ss_pred             HHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 010623          368 VILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQAC  430 (506)
Q Consensus       368 ~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~  430 (506)
                      ..+|+.+.+....++.......|+.|++..+.........+..+.+++..+ +.....+.+.+
T Consensus       298 ~~aa~~i~~~~~~~~~~~~~~~l~~Y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  359 (398)
T TIGR02028       298 RMCAEAIVEESRLGGAVTEEGDLAGYLRRWDKEYRPTYRVLDLLQRVFYRS-NAGREAFVEMC  359 (398)
T ss_pred             HHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHh
Confidence            999999986532222112246799999988877777777888888888763 55544444443

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.97  E-value=7.6e-30  Score=248.92  Aligned_cols=285  Identities=25%  Similarity=0.252  Sum_probs=180.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC-Cc
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD-GN  139 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~-~~  139 (506)
                      +||+||||||+|+++|+.|+++|++|+|+||.+......++..+.+++.+.+...+.. ..     .......++.. +.
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~-----~~~~~~~~~~~~~~   74 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLEL-IV-----NLVRGARFFSPNGD   74 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchh-hh-----hheeeEEEEcCCCc
Confidence            6999999999999999999999999999999987666667777888877776554431 11     11122222222 22


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                      ..  ..+.    .....+.++|..+.+.|.+.+.+. +++++.+ +++++..+++++. +.+  .++. .+++||+||+|
T Consensus        75 ~~--~~~~----~~~~~~~i~r~~l~~~l~~~~~~~-gv~~~~~~~v~~~~~~~~~~~-~~~--~~~~-~~~~a~~vv~a  143 (295)
T TIGR02032        75 SV--EIPI----ETELAYVIDRDAFDEQLAERAQEA-GAELRLGTTVLDVEIHDDRVV-VIV--RGGE-GTVTAKIVIGA  143 (295)
T ss_pred             EE--Eecc----CCCcEEEEEHHHHHHHHHHHHHHc-CCEEEeCcEEeeEEEeCCEEE-EEE--cCcc-EEEEeCEEEEC
Confidence            21  1111    123446789999999999999887 7888777 5999888777543 333  3332 35789999999


Q ss_pred             cCCcccchhhccCCCCCCccceeeEEEe-ccCC--CCCCeeEEEec----CCCcEEEEecCCCeEEEEEEecCCCCCCCC
Q 010623          219 DGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNL--PFENHGHVVLA----DPSPILFYPISSNEVRCLVDIPGQKVPSIS  291 (506)
Q Consensus       219 dG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  291 (506)
                      ||.+|.+|+.++........ ..++... ..+.  ..++...+++.    ++++.|++|+++++..+.+......    .
T Consensus       144 ~G~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~----~  218 (295)
T TIGR02032       144 DGSRSIVAKKLGLRKEPREL-GVAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSRSAE----E  218 (295)
T ss_pred             CCcchHHHHhcCCCCCCcce-eeEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeeccCC----C
Confidence            99999999988765422221 1222111 1111  12233334433    3578899999998766666544332    1


Q ss_pred             chHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCC-ccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHH
Q 010623          292 NGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNR-SMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVIL  370 (506)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~L  370 (506)
                      ..+..+.+.+++. ..+. +.    . ........++.. .....++..+||+++|||||.++|++|||+|+||+||..+
T Consensus       219 ~~~~~~~~~~~~~-~~~~-l~----~-~~~~~~~~~~~~~~~~~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~a  291 (295)
T TIGR02032       219 GEDLKKYLKDFLA-RRPE-LK----D-AETVEVIGAPIPIGRPDDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVA  291 (295)
T ss_pred             CCCHHHHHHHHHH-hCcc-cc----c-CcEEeeeceeeccCCCCCccccCCEEEEecccCCCCCccCCcHHHHHHHHHHH
Confidence            2233334443321 1111 10    0 000111111111 1245677889999999999999999999999999999999


Q ss_pred             HHHh
Q 010623          371 RNLL  374 (506)
Q Consensus       371 a~~L  374 (506)
                      |+.|
T Consensus       292 a~~~  295 (295)
T TIGR02032       292 AEVI  295 (295)
T ss_pred             HhhC
Confidence            9864

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=99.97  E-value=3.4e-30  Score=279.57  Aligned_cols=323  Identities=18%  Similarity=0.164  Sum_probs=203.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCCCCcccccccccchHHHHHHhC--chhHHhhcccceecceEEEE
Q 010623           61 ADVIVVGAGVAGAALANTLAKD--GRRVHVIERDLSEPDRIVGELLQPGGYLKLIELG--LEDCVEQIDAQRVFGYALFK  136 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g--~~~~~~~~~~~~~~~~~~~~  136 (506)
                      .+|+||||||+||++|+.|+++  |++|+|+||++.....+.|..+++++++.|+.++  +.+.+... ........++.
T Consensus         1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~-~~~~~~~~~~~   79 (765)
T PRK08255          1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDA-FNHWDDIDVHF   79 (765)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHh-cccCCceEEEE
Confidence            3799999999999999999998  8999999999866656677788999988888776  22222221 11112223333


Q ss_pred             CCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeE
Q 010623          137 DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLT  215 (506)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~v  215 (506)
                      .+... ..       .......++|.+|.+.|.+.+.+. ++++++++ ++++.+                 ...++|+|
T Consensus        80 ~g~~~-~~-------~g~~~~~i~R~~L~~~L~e~a~~~-GV~i~~g~~v~~i~~-----------------~~~~~D~V  133 (765)
T PRK08255         80 KGRRI-RS-------GGHGFAGIGRKRLLNILQARCEEL-GVKLVFETEVPDDQA-----------------LAADADLV  133 (765)
T ss_pred             CCEEE-EE-------CCeeEecCCHHHHHHHHHHHHHHc-CCEEEeCCccCchhh-----------------hhcCCCEE
Confidence            33211 10       011123578999999999999988 78888875 554321                 11359999


Q ss_pred             EeecCCcccchhhccCCCCCC-ccceeeEEEeccCCCCCCeeEE-EecCCCc--EEEEecCCCeEEEEEEecCC-----C
Q 010623          216 IVCDGCFSNLRRSLCNPKVDV-PSCFVGLVLENCNLPFENHGHV-VLADPSP--ILFYPISSNEVRCLVDIPGQ-----K  286 (506)
Q Consensus       216 V~AdG~~S~vR~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~p~~~~~~~~~~~~~~~-----~  286 (506)
                      |+|||.+|.+|+++....... ......+............... .....++  ...||++++...+++..+.+     .
T Consensus       134 VgADG~~S~vR~~~~~~~~~~~~~~~~~~~w~g~~~~~~~~~~~~~~~~~g~~~~~~y~~~~~~~~~~~~~~~~~~~~~~  213 (765)
T PRK08255        134 IASDGLNSRIRTRYADTFQPDIDTRRCRFVWLGTHKVFDAFTFAFEETEHGWFQAHAYRFDDDTSTFIVETPEEVWRAAG  213 (765)
T ss_pred             EEcCCCCHHHHHHHHhhcCCceecCCCceEEecCCCcccceeEEEEecCCceEEEEEeeeCCCCcEEEEEcCHHHHHhcC
Confidence            999999999999875321110 1111111111111111111111 1112232  34578887776777766432     1


Q ss_pred             CCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCc----EEEEccCCCCCCCCcchhhHH
Q 010623          287 VPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPG----ALLMGDAFNMRHPLTGGGMTV  362 (506)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r----v~LvGDAAh~~~P~~GqG~n~  362 (506)
                      .+..+.++..+.+.+.+.+..+..  ..+....................+|..+|    |+|+|||||.++|+.|||+|+
T Consensus       214 ~~~~~~~~~~~~l~~~f~~~~~~~--~li~~~~~~~~~~w~~~~~~~~~~w~~gr~~~~v~liGDAAH~~~P~~GqG~~~  291 (765)
T PRK08255        214 LDEMSQEESIAFCEKLFADYLDGH--PLMSNASHLRGSAWINFPRVVCERWVHWNRRVPVVLMGDAAHTAHFSIGSGTKL  291 (765)
T ss_pred             CccCCHHHHHHHHHHHhHHhcCCC--cccccccccccceeeecceeccCCCccCCCcccEEEEEcCcccCCCCcchhHHH
Confidence            223345555555555444332211  11111100001111222334567899999    999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcC
Q 010623          363 ALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSA  417 (506)
Q Consensus       363 ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~  417 (506)
                      ||+||..|++.|....     .+++++|+.|+++|++++..++..|+....+|..
T Consensus       292 aieDa~~La~~L~~~~-----~~~~~al~~ye~~R~~r~~~~~~~s~~~~~~~~~  341 (765)
T PRK08255        292 ALEDAIELARCLHEHP-----GDLPAALAAYEEERRVEVLRIQNAARNSTEWFEN  341 (765)
T ss_pred             HHHHHHHHHHHHHHcc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHhCceeee
Confidence            9999999999998642     2578999999999999999999999876666544

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=99.97  E-value=1.9e-30  Score=245.21  Aligned_cols=371  Identities=18%  Similarity=0.161  Sum_probs=265.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCCCC--C-------cccccccccchHHHHHHhCchhHHhhc
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKD----GRRVHVIERDLSEP--D-------RIVGELLQPGGYLKLIELGLEDCVEQI  124 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~----G~~v~vvE~~~~~~--~-------~~~g~~l~~~~~~~l~~~g~~~~~~~~  124 (506)
                      +..+||+||||||+|+++|..|...    -.+|.|+|....+.  .       ..+-..++++++..++.+|.|+.+...
T Consensus        34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~  113 (481)
T KOG3855|consen   34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFHD  113 (481)
T ss_pred             cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhhhh
Confidence            3479999999999999999999864    36999999874321  1       112345789999999999999999887


Q ss_pred             ccceecceEEEECCceeeeecCCcCCCCCcccccccchHHHHHHH--HHHHcCCCEEEEece-EEEEEee-----CCeEE
Q 010623          125 DAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLR--EKAASLPNVRLEQGT-VTSLLEE-----KGTIK  196 (506)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~--~~~~~~~~v~i~~~~-v~~~~~~-----~~~v~  196 (506)
                      ...+..++..|+.-....+.+..+... ...++.+....+...|+  +...+..++++.+.+ +.++...     ++...
T Consensus       114 R~~~~~~~~v~Ds~s~a~I~~~~d~~~-~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~  192 (481)
T KOG3855|consen  114 RYQKFSRMLVWDSCSAALILFDHDNVG-IDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGM  192 (481)
T ss_pred             ccccccceeeecccchhhhhhcccccc-ccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCcc
Confidence            777777777777655555555533332 23456777777887887  455556688888874 7766542     12222


Q ss_pred             EEEEEeCCccEEEEEcCeEEeecCCcccchhhccCCCCCCccceeeEEEe---ccCCCCCCeeEEEecCCCcEEEEecCC
Q 010623          197 GVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE---NCNLPFENHGHVVLADPSPILFYPISS  273 (506)
Q Consensus       197 ~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~  273 (506)
                      ...+...||..  +.+|++|+|||.+|.+|+..+++..++.+...+++..   .++......++..|.+.|++.+.|+++
T Consensus       193 ~~~i~l~dg~~--~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~~~~~~~~AwQRFlP~GpiAllpl~d  270 (481)
T KOG3855|consen  193 WFHITLTDGIN--FATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLPTGPIALLPLSD  270 (481)
T ss_pred             eEEEEeccCce--eeeceeeccccccchhhhhcCCCcccccccceeeeEEEEecccccccchhHHhcCCCCceeeccccc
Confidence            35666788874  5699999999999999999999988887777776654   334555667788889999999999999


Q ss_pred             CeEEEEEEecCCC---CCCCCchHHHHHHHHhcCCCCCh-----hhh----------HHHHhhhc---------------
Q 010623          274 NEVRCLVDIPGQK---VPSISNGEMANYLKTVVAPQIPR-----EIF----------HSFVAAVD---------------  320 (506)
Q Consensus       274 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~~~----------~~~~~~~~---------------  320 (506)
                      +-....|...++.   .....++...+.+...+.-+-+.     +..          ..+.....               
T Consensus       271 ~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k~~~~~q~pp~V~~v~  350 (481)
T KOG3855|consen  271 TLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSKRLANQQYPPSVFEVG  350 (481)
T ss_pred             ccccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchhhccHHHHhccCcccccccCCeEEEec
Confidence            8878888665332   22344555555555443211110     000          01111100               


Q ss_pred             CCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcch
Q 010623          321 GGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPV  400 (506)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~  400 (506)
                      ...-..+|+...+++.|...|+.|+|||||.+||..|||.|++..|+..|...|..+...+-+-...+.|+-|+++|.+.
T Consensus       351 dksRa~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~DlgS~~~L~~y~~~~~~~  430 (481)
T KOG3855|consen  351 DKSRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGLDLGSVEHLEPYERERLQH  430 (481)
T ss_pred             ccceeecccccccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcccccchhhhhHHHHHHhhh
Confidence            01234678888889999999999999999999999999999999999999999987633223333457899999999999


Q ss_pred             hHHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 010623          401 ASTINTLAGALYQVFSASPDEARKEMRQACFD  432 (506)
Q Consensus       401 ~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~  432 (506)
                      ...+....+.+.++|+.+ .+....+|...+.
T Consensus       431 N~~ll~~vdkl~klY~t~-~p~vV~~rt~GL~  461 (481)
T KOG3855|consen  431 NYVLLGAVDKLHKLYATS-APPVVLLRTFGLQ  461 (481)
T ss_pred             cchHHHHHHHHHHHHhcc-CCcEEEEeccchh
Confidence            988888889999999887 5555555554433

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.97  E-value=6.8e-28  Score=243.99  Aligned_cols=323  Identities=23%  Similarity=0.278  Sum_probs=206.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccc-cccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVG-ELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD  137 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g-~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  137 (506)
                      +++||+||||||||++||+.|++.|++|+|+||...+..+.++ ..+.+..++.+......+ +    ...+.+..++..
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~-i----~~~v~~~~~~~~   76 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEE-I----ERKVTGARIYFP   76 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchh-h----heeeeeeEEEec
Confidence            4699999999999999999999999999999999888877665 667766655443222211 1    123344444444


Q ss_pred             CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623          138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI  216 (506)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV  216 (506)
                      +.......+.      ..++.++|..|++.|.+.+++. |++++.++ +.++..+++++..++ .  .+. .+++|++||
T Consensus        77 ~~~~~~~~~~------~~~y~v~R~~fd~~La~~A~~a-Gae~~~~~~~~~~~~~~~~~~~~~-~--~~~-~e~~a~~vI  145 (396)
T COG0644          77 GEKVAIEVPV------GEGYIVDRAKFDKWLAERAEEA-GAELYPGTRVTGVIREDDGVVVGV-R--AGD-DEVRAKVVI  145 (396)
T ss_pred             CCceEEecCC------CceEEEEhHHhhHHHHHHHHHc-CCEEEeceEEEEEEEeCCcEEEEE-E--cCC-EEEEcCEEE
Confidence            3333332221      4578999999999999999998 77888775 999998887554222 2  222 568899999


Q ss_pred             eecCCcccchhhccCCCCCCccceeeEEEeccCCCC-CCeeEEE-e----cCCCcEEEEecCCCeEEEEEEecCCCCCCC
Q 010623          217 VCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPF-ENHGHVV-L----ADPSPILFYPISSNEVRCLVDIPGQKVPSI  290 (506)
Q Consensus       217 ~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~----~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  290 (506)
                      +|||.+|.+++.++.. ...+.............|. .....+. +    .+.++.|+||..++..++.+...... +..
T Consensus       146 ~AdG~~s~l~~~lg~~-~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Gy~wifP~~~~~~~VG~g~~~~~-~~~  223 (396)
T COG0644         146 DADGVNSALARKLGLK-DRKPEDYAIGVKEVIEVPDDGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVLLDD-PSL  223 (396)
T ss_pred             ECCCcchHHHHHhCCC-CCChhheeEEeEEEEecCCCCceEEEEecCCccCCCceEEEEECCCceEEEEEEEecCC-cCC
Confidence            9999999999999987 2222222222222222332 2222222 2    24678999999999888888765443 222


Q ss_pred             CchHHHHHHHHhcC-CCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHH
Q 010623          291 SNGEMANYLKTVVA-PQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVI  369 (506)
Q Consensus       291 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~  369 (506)
                      ... . +.++++.. +.....+..  ....+ ......|.......++..++++++||||..++|++|.|+..||..|..
T Consensus       224 ~~~-~-~~l~~f~~~~~~~~~~~~--~~~~~-~~~~~ip~~g~~~~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~  298 (396)
T COG0644         224 SPF-L-ELLERFKEHPAIRKLLLG--GKILE-YAAGGIPEGGPASRPLVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKL  298 (396)
T ss_pred             Cch-H-HHHHHHHhCcccchhccC--CceEE-EeeeecccCCcCCCccccCCEEEEeccccCCCCcccCcHHHHHHHHHH
Confidence            221 1 33333221 111111100  00000 011233333322223678899999999999999999999999999999


Q ss_pred             HHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHH
Q 010623          370 LRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAG  409 (506)
Q Consensus       370 La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~  409 (506)
                      +|+.+.+....+     .+.|..|++..+...........
T Consensus       299 Aa~~i~~~~~~~-----~~~l~~Y~~~~~~~~~~~~~~~~  333 (396)
T COG0644         299 AAEAIAEALEGG-----EEALAEYERLLRKSLAREDLKSL  333 (396)
T ss_pred             HHHHHHHHHHcC-----hhHHHHHHHHHHHHHHHHHHHHh
Confidence            999998753211     46777788888766554444333

>PRK11445 putative oxidoreductase; Provisional

Probab=99.97  E-value=1e-28  Score=246.19  Aligned_cols=306  Identities=17%  Similarity=0.152  Sum_probs=181.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC----CcccccccccchHHHHHHhCchhHHhhcccceecceEEEE
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP----DRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFK  136 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~----~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  136 (506)
                      +||+||||||+|+++|+.|+++ ++|+|+||.+...    ...+|..+++++.+.|+++|++...............   
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~---   77 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVK---   77 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceee---
Confidence            7999999999999999999999 9999999987542    3458889999999999999986321111100000000   


Q ss_pred             CCceeeeecCCcC-CCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCe
Q 010623          137 DGNRTQISYPLEK-FHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPL  214 (506)
Q Consensus       137 ~~~~~~~~~~~~~-~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~  214 (506)
                           ...+.... .......+.++|..|.+.|.+.+ +. ++++++++ ++++.++++++. +++ .++|+..+++||+
T Consensus        78 -----~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~-~~-gv~v~~~~~v~~i~~~~~~~~-v~~-~~~g~~~~i~a~~  148 (351)
T PRK11445         78 -----TIDLANSLTRNYQRSYINIDRHKFDLWLKSLI-PA-SVEVYHNSLCRKIWREDDGYH-VIF-RADGWEQHITARY  148 (351)
T ss_pred             -----EecccccchhhcCCCcccccHHHHHHHHHHHH-hc-CCEEEcCCEEEEEEEcCCEEE-EEE-ecCCcEEEEEeCE
Confidence                 01111000 00111234689999999998854 33 68888875 888887776433 433 2466655688999


Q ss_pred             EEeecCCcccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEec---CCCcEEEEecCCCeEEEEEEecCCCCCCC
Q 010623          215 TIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLA---DPSPILFYPISSNEVRCLVDIPGQKVPSI  290 (506)
Q Consensus       215 vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  290 (506)
                      ||+|||.+|.+|++++.....  ..+.++..+ ....+.+. ...+++   .+++.|.+|..+.. ......+...... 
T Consensus       149 vV~AdG~~S~vr~~l~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~W~~p~~~~~-~~g~~~~~~~~~~-  223 (351)
T PRK11445        149 LVGADGANSMVRRHLYPDHQI--RKYVAIQQWFAEKHPVPF-YSCIFDNEITDCYSWSISKDGYF-IFGGAYPMKDGRE-  223 (351)
T ss_pred             EEECCCCCcHHhHHhcCCCch--hhEEEEEEEecCCCCCCC-cceEEeccCCCceEEEeCCCCcE-EecccccccchHH-
Confidence            999999999999998754221  123333222 11111111 112222   23567778875532 2211112110000 


Q ss_pred             CchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCC--CCCCCcEEEEccCCCCCCCCcchhhHHHHHHHH
Q 010623          291 SNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAA--PYPTPGALLMGDAFNMRHPLTGGGMTVALSDIV  368 (506)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~  368 (506)
                      ..+.+.+.+.+ ....+.+.+.        ..  ...+.......  .+.++|++|||||||.++|++|||+|.|++||.
T Consensus       224 ~~~~l~~~l~~-~~~~~~~~~~--------~~--~~~~~~~~~~~~~~~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~  292 (351)
T PRK11445        224 RFETLKEKLSA-FGFQFGKPVK--------TE--ACTVLRPSRWQDFVCGKDNAFLIGEAAGFISPSSLEGISYALDSAR  292 (351)
T ss_pred             HHHHHHHHHHh-cccccccccc--------cc--cccccCcccccccccCCCCEEEEEcccCccCCccCccHHHHHHhHH
Confidence            00111112211 1111111110        00  00111111112  234589999999999999999999999999999


Q ss_pred             HHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHH
Q 010623          369 ILRNLLRHLSNLNDAPALCNYLESFYTLRKPVAST  403 (506)
Q Consensus       369 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~  403 (506)
                      .|++.|.+..        ...++.|++..+...-.
T Consensus       293 ~la~~l~~~~--------~~~~~~y~~~~~~~~~~  319 (351)
T PRK11445        293 ILSEVLNKQP--------EKLNTAYWRKTRKLRLK  319 (351)
T ss_pred             HHHHHHHhcc--------cchHHHHHHHHHHHHHH
Confidence            9999997532        35788999888776533

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=99.95  E-value=1.3e-24  Score=220.35  Aligned_cols=306  Identities=20%  Similarity=0.171  Sum_probs=180.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecc-eEEEECCce
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFG-YALFKDGNR  140 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~-~~~~~~~~~  140 (506)
                      ||+||||||+|+++|+.|++.|++|+|+|+.+.... .....++..   .++++++.+.+..    ...+ ..+...+..
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~   72 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG-NHTYGVWDD---DLSDLGLADCVEH----VWPDVYEYRFPKQP   72 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCC-CccccccHh---hhhhhchhhHHhh----cCCCceEEecCCcc
Confidence            899999999999999999999999999999864321 111222222   2444554332221    1112 111111111


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecC
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDG  220 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG  220 (506)
                      ..         .......+++..|.+.|.+.+.+. +++++.++|+++..+++..  +.+...+|+  +++|++||+|||
T Consensus        73 ~~---------~~~~~~~i~~~~l~~~l~~~~~~~-gv~~~~~~v~~i~~~~~~~--~~v~~~~g~--~~~a~~VI~A~G  138 (388)
T TIGR01790        73 RK---------LGTAYGSVDSTRLHEELLQKCPEG-GVLWLERKAIHAEADGVAL--STVYCAGGQ--RIQARLVIDARG  138 (388)
T ss_pred             hh---------cCCceeEEcHHHHHHHHHHHHHhc-CcEEEccEEEEEEecCCce--eEEEeCCCC--EEEeCEEEECCC
Confidence            00         011223588999999999999887 6788777888887763432  344456675  467999999999


Q ss_pred             CcccchhhccCCCCCCccceeeEEEeccCCCCCCeeEEEec----C--------CC--cEEEEecCCCeEEEEEEecCCC
Q 010623          221 CFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLA----D--------PS--PILFYPISSNEVRCLVDIPGQK  286 (506)
Q Consensus       221 ~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--------~~--~~~~~p~~~~~~~~~~~~~~~~  286 (506)
                      .+|.+++........ .....|+...-...+.+....++++    +        .+  ++|++|.++++..+...... .
T Consensus       139 ~~s~~~~~~~~~~~~-~q~~~G~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~lP~~~~~~~v~~~~~~-~  216 (388)
T TIGR01790       139 FGPLVQYVRFPLNVG-FQVAYGVEARLSRPPHGPSSMVIMDARVDQLAAPELKGYRPTFLYAMPLGSTRVFIEETSLA-D  216 (388)
T ss_pred             CchhcccccCCCCce-EEEEEEEEEEEcCCCCCCCceEEEeccccccccccccCCCCceEEEeecCCCeEEEEecccc-C
Confidence            999775433221111 1234454443211111111111111    1        12  67889998876543321111 1


Q ss_pred             CCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHH
Q 010623          287 VPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSD  366 (506)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~D  366 (506)
                      .+..+.++.++.+.+.+... .....     .+.......+|+....  ++..+|++++|||||.++|.+|+|++.++++
T Consensus       217 ~~~~~~~~~~~~l~~~~~~~-g~~~~-----~i~~~~~~~iP~~~~~--~~~~~rv~liGdAAg~~~P~tG~Gi~~al~~  288 (388)
T TIGR01790       217 RPALPRDRLRQRILARLNAQ-GWQIK-----TIEEEEWGALPVGLPG--PFLPQRVAAFGAAAGMVHPTTGYSVARALSD  288 (388)
T ss_pred             CCCCCHHHHHHHHHHHHHHc-CCeee-----EEEeeeeEEEecccCC--CccCCCeeeeechhcCcCCcccccHHHHHHH
Confidence            12334556666665543211 10000     0111123344554332  2367899999999999999999999999999


Q ss_pred             HHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHH
Q 010623          367 IVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVAST  403 (506)
Q Consensus       367 a~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~  403 (506)
                      |..+++.|.+....+    ...+++.|++..+++..+
T Consensus       289 a~~la~~l~~~~~~~----~~~~~~~~~~~~~~~~~~  321 (388)
T TIGR01790       289 APGLAAAIAQALCQS----SELATAAWDGLWPTERRR  321 (388)
T ss_pred             HHHHHHHHHHHhccC----HHHHHHHHHHhchHHHHH
Confidence            999999998654222    357888888766665554

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK10015 oxidoreductase; Provisional

Probab=99.94  E-value=1.3e-24  Score=221.58  Aligned_cols=341  Identities=19%  Similarity=0.188  Sum_probs=190.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc-cccccccchHHHHHHhCchh--HHhhcccceecceEEEE
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI-VGELLQPGGYLKLIELGLED--CVEQIDAQRVFGYALFK  136 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~-~g~~l~~~~~~~l~~~g~~~--~~~~~~~~~~~~~~~~~  136 (506)
                      ++||+||||||+|+++|+.|+++|++|+|+||.+.+..+. +|..+.....+.+.. ++..  .+..  ......+.+..
T Consensus         5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~-~~~~~~~i~~--~~~~~~~~~~~   81 (429)
T PRK10015          5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIP-GFAASAPVER--KVTREKISFLT   81 (429)
T ss_pred             ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcc-cccccCCccc--cccceeEEEEe
Confidence            5999999999999999999999999999999987665443 344444444333210 2211  0111  00111122223


Q ss_pred             CCceeeeecCCcCCCC-CcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCe
Q 010623          137 DGNRTQISYPLEKFHS-DVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPL  214 (506)
Q Consensus       137 ~~~~~~~~~~~~~~~~-~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~  214 (506)
                      .+......+....... ...++.+.|..|++.|.+.+++. +++++.+ +|+++..+++++.++.  . ++.  +++|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~-Gv~i~~~~~V~~i~~~~~~v~~v~--~-~~~--~i~A~~  155 (429)
T PRK10015         82 EESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQA-GAQFIPGVRVDALVREGNKVTGVQ--A-GDD--ILEANV  155 (429)
T ss_pred             CCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHc-CCEEECCcEEEEEEEeCCEEEEEE--e-CCe--EEECCE
Confidence            3323333333222111 12367889999999999999887 7888877 5999887777655443  2 232  478999


Q ss_pred             EEeecCCcccchhhccCCCCCCcc-ceeeEEEeccCCC------------CCCeeEEEecC--CC---cEEEEecCCCeE
Q 010623          215 TIVCDGCFSNLRRSLCNPKVDVPS-CFVGLVLENCNLP------------FENHGHVVLAD--PS---PILFYPISSNEV  276 (506)
Q Consensus       215 vV~AdG~~S~vR~~l~~~~~~~~~-~~~~~~~~~~~~~------------~~~~~~~~~~~--~~---~~~~~p~~~~~~  276 (506)
                      ||+|||.+|.+++.++........ ...++... ...+            .....+++++.  ++   ..|+|+-. +..
T Consensus       156 VI~AdG~~s~v~~~lg~~~~~~~~~~~~gvk~~-~~~~~~~i~~~~~~~~~~g~~w~~~g~~~~g~~g~G~~~~~~-d~v  233 (429)
T PRK10015        156 VILADGVNSMLGRSLGMVPASDPHHYAVGVKEV-IGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTNK-DSI  233 (429)
T ss_pred             EEEccCcchhhhcccCCCcCCCcCeEEEEEEEE-EeCCHHHhhHhhcCCCCCCeEEEecCccCCCCCCceEEEEcC-CcE
Confidence            999999999999998764322221 12222211 1111            11122333321  12   34566643 445


Q ss_pred             EEEEEecCCCCCCCCchHHHHHHHHhcCCCCChhhhHHHHhhh-cCCCeEEecCCcc-CCCCCCCCcEEEEccCCCCCCC
Q 010623          277 RCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAV-DGGNIKTMPNRSM-PAAPYPTPGALLMGDAFNMRHP  354 (506)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~rv~LvGDAAh~~~P  354 (506)
                      ++.+...-..... ......+++.++..   .+.+.+.+.... ........|.... ..++...+|++++||||+.++|
T Consensus       234 ~vGv~~~~~~~~~-~~~~~~~~l~~~~~---~p~~~~~~~~~~~~e~~~~~ip~gg~~~~~~~~~~g~llvGDAAg~v~p  309 (429)
T PRK10015        234 SLGLVCGLGDIAH-AQKSVPQMLEDFKQ---HPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIVGDAAGFCLN  309 (429)
T ss_pred             EEEEEEehhhhcc-CCCCHHHHHHHHhh---ChHHHHHhcCCEEEEEeeEEcccCCcccCCccccCCeEEEecccccccc
Confidence            5554332111111 11223333333211   122222211110 0001122232211 2346678999999999999985


Q ss_pred             --CcchhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHcC
Q 010623          355 --LTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPV-ASTINTLAGALYQVFSA  417 (506)
Q Consensus       355 --~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~s~~~~~~~~~  417 (506)
                        ++|+|++.||.++...|+.+.+....++  -....|..|++..+.. ...-....+.+..++..
T Consensus       310 ~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~d--~s~~~l~~Y~~~~~~~~~~~~l~~~~~~~~~~~~  373 (429)
T PRK10015        310 LGFTVRGMDLAIASAQAAATTVIAAKERAD--FSASSLAQYKRELEQSCVMRDMQHFRKIPALMEN  373 (429)
T ss_pred             cCccccchhHHHHHHHHHHHHHHHHHhcCC--CccccHHHHHHHHHHCHHHHHHHHHhChHhhhcC
Confidence              6999999999999999998876543211  2245679999877755 33334444445555543

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.93  E-value=1.6e-23  Score=213.76  Aligned_cols=324  Identities=20%  Similarity=0.194  Sum_probs=179.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc-cccccccchHHHH-HHhCchhHHhhcccceecceEEEEC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI-VGELLQPGGYLKL-IELGLEDCVEQIDAQRVFGYALFKD  137 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~-~g~~l~~~~~~~l-~~~g~~~~~~~~~~~~~~~~~~~~~  137 (506)
                      ++||+||||||+|+++|+.|+++|++|+|+||.+.+..+. +|..+.....+.+ ..+.....+...  .......+...
T Consensus         5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~--~~~~~~~~~~~   82 (428)
T PRK10157          5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERL--ITHEKLAFMTE   82 (428)
T ss_pred             cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccce--eeeeeEEEEcC
Confidence            5999999999999999999999999999999987665443 3434443333221 100000000000  00111222222


Q ss_pred             CceeeeecCCcC-CCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeE
Q 010623          138 GNRTQISYPLEK-FHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLT  215 (506)
Q Consensus       138 ~~~~~~~~~~~~-~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~v  215 (506)
                      .......+.... .......+.+.|..|++.|.+.+.+. |++++.+ +|+++..+++++.+++   .+|+  +++|++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~-Gv~i~~~~~V~~i~~~~g~v~~v~---~~g~--~i~A~~V  156 (428)
T PRK10157         83 KSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEA-GAQLITGIRVDNLVQRDGKVVGVE---ADGD--VIEAKTV  156 (428)
T ss_pred             CCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHC-CCEEECCCEEEEEEEeCCEEEEEE---cCCc--EEECCEE
Confidence            222222222111 11223457789999999999999887 7888877 5999988777654332   3454  4679999


Q ss_pred             EeecCCcccchhhccCCCCCCccceeeEEEe-ccCCC-----------C-CCeeEEEecC--CC---cEEEEecCCCeEE
Q 010623          216 IVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLP-----------F-ENHGHVVLAD--PS---PILFYPISSNEVR  277 (506)
Q Consensus       216 V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~-----------~-~~~~~~~~~~--~~---~~~~~p~~~~~~~  277 (506)
                      |+|||.+|.+++.++....... ...++... ....+           . +...+++.+.  ++   ..|+|+- .+...
T Consensus       157 I~A~G~~s~l~~~lgl~~~~~~-~~~av~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~g~~ggG~~~~~-~~~~s  234 (428)
T PRK10157        157 ILADGVNSILAEKLGMAKRVKP-TDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTN-ENTLS  234 (428)
T ss_pred             EEEeCCCHHHHHHcCCCCCCCC-cEEEEEEEEEEEcCHHHHHHhhccCCCCCeEEEEEECCCCCCcCceeEEEc-CCeEE
Confidence            9999999999999887532222 22222111 00111           1 1122333321  11   2355653 33444


Q ss_pred             EEEEecCCCCC--CCCchHHHHHHHHhcCCCCChhhhHHHHhhh-cCCCeEEecCCc-cCCCCCCCCcEEEEccCCCCCC
Q 010623          278 CLVDIPGQKVP--SISNGEMANYLKTVVAPQIPREIFHSFVAAV-DGGNIKTMPNRS-MPAAPYPTPGALLMGDAFNMRH  353 (506)
Q Consensus       278 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~rv~LvGDAAh~~~  353 (506)
                      +.+....+...  ..+..++.+.+.+  .+.    +...+.... ..-.....|... ...++...++++++||||..++
T Consensus       235 vG~~~~~~~~~~~~~~~~~~l~~~~~--~p~----v~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~~g~llvGDAAg~v~  308 (428)
T PRK10157        235 LGLVCGLHHLHDAKKSVPQMLEDFKQ--HPA----VAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCM  308 (428)
T ss_pred             EEEEEehHHhcccCCCHHHHHHHHHh--Cch----HHHHhCCCeEHHHHhhHhhcCCcccCCceecCCeEEEeccccccc
Confidence            44433222111  1222333333322  111    111110000 000001112111 1234556789999999999999


Q ss_pred             C--CcchhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchh
Q 010623          354 P--LTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVA  401 (506)
Q Consensus       354 P--~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~  401 (506)
                      |  ++|+|++.||..+..+|+.+.+....+  +...+.|..|++.-+...
T Consensus       309 p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~--~~s~~~l~~Y~~~l~~~~  356 (428)
T PRK10157        309 NLGFTIRGMDLAIAAGEAAAKTVLSAMKSD--DFSKQKLAEYRQHLESGP  356 (428)
T ss_pred             ccCceeeeHHHHHHHHHHHHHHHHHHHhcC--CcchhhHHHHHHHHHHhH
Confidence            8  599999999999999999887654322  223467889997665554

>PLN02697 lycopene epsilon cyclase

Probab=99.93  E-value=8.9e-23  Score=210.16  Aligned_cols=323  Identities=19%  Similarity=0.174  Sum_probs=193.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD  137 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  137 (506)
                      ...+||+||||||+|+++|+.|++.|++|+|+|+......   ..+++   ...++.+|+.+.+..    ...+..++.+
T Consensus       106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~---n~GvW---~~~l~~lgl~~~i~~----~w~~~~v~~~  175 (529)
T PLN02697        106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN---NYGVW---EDEFKDLGLEDCIEH----VWRDTIVYLD  175 (529)
T ss_pred             cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCC---ccccc---hhHHHhcCcHHHHHh----hcCCcEEEec
Confidence            3459999999999999999999999999999998632211   12233   245677887765543    1222233322


Q ss_pred             -CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623          138 -GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI  216 (506)
Q Consensus       138 -~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV  216 (506)
                       +.....         ......++|..|.+.|.+.+.+. ++++..++|+++.++++.+. +. ...+|.  +++|++||
T Consensus       176 ~~~~~~~---------~~~Yg~V~R~~L~~~Ll~~a~~~-GV~~~~~~V~~I~~~~~~~~-vv-~~~dG~--~i~A~lVI  241 (529)
T PLN02697        176 DDKPIMI---------GRAYGRVSRTLLHEELLRRCVES-GVSYLSSKVDRITEASDGLR-LV-ACEDGR--VIPCRLAT  241 (529)
T ss_pred             CCceeec---------cCcccEEcHHHHHHHHHHHHHhc-CCEEEeeEEEEEEEcCCcEE-EE-EEcCCc--EEECCEEE
Confidence             221110         11112588999999999999886 67776668999987766543 22 245565  46799999


Q ss_pred             eecCCcccchhhccCCC--C-CCccceeeEEEeccCCCCCCeeEEEec---------------CCCcEEEEecCCCeEEE
Q 010623          217 VCDGCFSNLRRSLCNPK--V-DVPSCFVGLVLENCNLPFENHGHVVLA---------------DPSPILFYPISSNEVRC  278 (506)
Q Consensus       217 ~AdG~~S~vR~~l~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~p~~~~~~~~  278 (506)
                      +|||.+|.  +.+..+.  + ...+...|+...-...+.+....++++               .+.++|++|.++++..+
T Consensus       242 ~AdG~~S~--rl~~~~~~~~~~~~Q~a~Gi~ve~~~~~~d~~~~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~V  319 (529)
T PLN02697        242 VASGAASG--RLLQYEVGGPRVCVQTAYGVEVEVENNPYDPSLMVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFF  319 (529)
T ss_pred             ECCCcChh--hhhccccCCCCcccEEEEEEEEEecCCCCCcchheeeccccccccccccccCCCceEEEEeecCCCeEEE
Confidence            99999993  2222211  1 112344555543222222111122222               12467889999986555


Q ss_pred             EE-EecCCCCCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcc
Q 010623          279 LV-DIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTG  357 (506)
Q Consensus       279 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G  357 (506)
                      -- .+..  .+..+.+.+++.+.+.+... .  +.  . ..+...+....|+.. ..+.. .++++++||||+.++|.+|
T Consensus       320 E~T~l~~--~~~l~~~~l~~~L~~~l~~~-G--i~--~-~~i~~~E~g~iPm~g-~~~~~-~~~vl~vG~AAG~vhPsTG  389 (529)
T PLN02697        320 EETCLAS--KDAMPFDLLKKRLMSRLETM-G--IR--I-LKTYEEEWSYIPVGG-SLPNT-EQKNLAFGAAASMVHPATG  389 (529)
T ss_pred             EEeeecc--CCCCCHHHHHHHHHHHHHhC-C--CC--c-ceEEEEEeeeecCCC-CCccc-CCCeeEeehhhcCCCCchh
Confidence            22 2211  12334556666666544311 0  10  0 011111223445533 22222 6789999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHhhhcCCCCC-------hHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHc
Q 010623          358 GGMTVALSDIVILRNLLRHLSNLND-------APALCNYLESFYTLRKPVASTINTLAGALYQVFS  416 (506)
Q Consensus       358 qG~n~ai~Da~~La~~L~~~~~~~~-------~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~  416 (506)
                      .|+..++.+|..+|+.+++..+.++       .......++.|++.......+....-.....++.
T Consensus       390 y~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e~~r~~~~~~~g~~~l~  455 (529)
T PLN02697        390 YSVVRSLSEAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQERKRQRAFFLFGLALIL  455 (529)
T ss_pred             hhHHHHHHhHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998754332       1245678999988877665554444433334443

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=99.93  E-value=7e-24  Score=216.71  Aligned_cols=336  Identities=22%  Similarity=0.207  Sum_probs=203.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC---CcEEEEecCCCCCCcccccccccchHHHHHHhCchhH--HhhcccceecceEEE-
Q 010623           62 DVIVVGAGVAGAALANTLAKDG---RRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDC--VEQIDAQRVFGYALF-  135 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G---~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~--~~~~~~~~~~~~~~~-  135 (506)
                      ||+|||||+||.++|..|++.+   ++|+|||+.. .+....|++..|.....++.+|+.+.  +.+.......+..+. 
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~-~~~~~vGe~~~p~~~~~~~~lgi~e~~~~~~~~~~~k~g~~f~~   79 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPD-IPRIGVGESTLPSLRPFLRRLGIDEADFMRACDATFKLGIRFVN   79 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SS-S---SSEEE--THHHHCHHHHT--HHHHCHHCT-EEESEEEEES
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCC-CCCCCccccchHHHHHHHHHcCCChHHHHHHhCCeEeccEEeee
Confidence            7999999999999999999998   9999999975 34556788888888889999999976  555554444444442 


Q ss_pred             -EC-CceeeeecCC---------------------------------------------cC-CCCCcccccccchHHHHH
Q 010623          136 -KD-GNRTQISYPL---------------------------------------------EK-FHSDVAGRGFHNGRFVQR  167 (506)
Q Consensus       136 -~~-~~~~~~~~~~---------------------------------------------~~-~~~~~~~~~i~~~~l~~~  167 (506)
                       .. +......|..                                             .. ......++.++|..+.+.
T Consensus        80 w~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~fd~~  159 (454)
T PF04820_consen   80 WGERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAKFDQF  159 (454)
T ss_dssp             SSSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHHHHHH
T ss_pred             cCCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHHHHHH
Confidence             11 1111111100                                             00 011234678999999999


Q ss_pred             HHHHHHcCCCEEEEeceEEEEEeeCC-eEEEEEEEeCCccEEEEEcCeEEeecCCcccchhhc-cCCCCCC---ccceee
Q 010623          168 LREKAASLPNVRLEQGTVTSLLEEKG-TIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSL-CNPKVDV---PSCFVG  242 (506)
Q Consensus       168 L~~~~~~~~~v~i~~~~v~~~~~~~~-~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~~l-~~~~~~~---~~~~~~  242 (506)
                      |++.+.+. |++++.++|+++..+++ .+.  .+..++|+  +++||++|+|+|..|.+.+.. ..+....   -.+..+
T Consensus       160 L~~~A~~~-Gv~~~~g~V~~v~~~~~g~i~--~v~~~~g~--~i~ad~~IDASG~~s~L~~~~L~~~~~~~~~~L~~d~a  234 (454)
T PF04820_consen  160 LRRHAEER-GVEVIEGTVVDVELDEDGRIT--AVRLDDGR--TIEADFFIDASGRRSLLARKALKVGFRDWSDWLPNDRA  234 (454)
T ss_dssp             HHHHHHHT-T-EEEET-EEEEEE-TTSEEE--EEEETTSE--EEEESEEEE-SGGG-CCCCCCT-EEEEEETTTCEEEEE
T ss_pred             HHHHHhcC-CCEEEeCEEEEEEEcCCCCEE--EEEECCCC--EEEEeEEEECCCccchhhHhhhcCCCccccccccccEE
Confidence            99999998 89999999888876644 444  34466775  477999999999999887763 3222111   112233


Q ss_pred             EEEe--ccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCCCCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhc
Q 010623          243 LVLE--NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVD  320 (506)
Q Consensus       243 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (506)
                      +...  ..+ +..........+.|++|.+|+.++... .+.+..+.   .++++..+.+.+.+...            ..
T Consensus       235 v~~~~~~~~-~~~~~T~~~a~~~GW~W~IPL~~~~~~-G~V~s~~~---~s~~~A~~~l~~~l~~~------------~~  297 (454)
T PF04820_consen  235 VAVQVPNED-PPEPYTRSTAFEAGWIWYIPLQNRRGS-GYVYSSDF---ISDDEAEAELLAYLGGS------------PE  297 (454)
T ss_dssp             EEEEEE-SS-CTTSSEEEEEESSEEEEEEEESSEEEE-EEEEETTT---SHHHHHHHHHHHHHTCH------------CT
T ss_pred             EEEecCcCC-CCCCceeEEecCCceEEEccCCCcceE-EEEecccc---CCHHHHHHHHHHhcchh------------hh
Confidence            3322  122 223334455667899999999998665 33333332   12333333333322210            00


Q ss_pred             CCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcch
Q 010623          321 GGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPV  400 (506)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~  400 (506)
                      ... ...+.......+...+|+++|||||+.++|+.++|+.+++..+..|+..|....  .+    +.+++.|++..+..
T Consensus       298 ~~~-~~i~~~~g~~~~~~~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l~~~~--~~----~~~~~~Yn~~~~~~  370 (454)
T PF04820_consen  298 AEP-RHIRFRSGRRKQFWGKNCVAVGDAAGFIDPLESTGIHLALSAAEALAEALPDDD--FS----PAALDRYNRRMRRE  370 (454)
T ss_dssp             TSC-EEEE-S-EEESSSEETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTHHCTT--CC----HHHHHHHHHHHHHH
T ss_pred             cch-hhhcccccchhhcccCCEEEEcchhhccCccccccHHHHHHHHHHHHHhcccCC--CC----HHHHHHHHHHHHHH
Confidence            011 222233333566677889999999999999999999999999998888887531  11    56889999999888


Q ss_pred             hHHHHHHHHHHHHHHcCCCchhHHHHH
Q 010623          401 ASTINTLAGALYQVFSASPDEARKEMR  427 (506)
Q Consensus       401 ~~~~~~~s~~~~~~~~~~~~~~~~~~r  427 (506)
                      ...+...-...+..-.....+.++..|
T Consensus       371 ~~~~~~fi~~hY~~~~r~ds~FW~~~~  397 (454)
T PF04820_consen  371 YERIRDFISLHYQLSRRRDSPFWRARR  397 (454)
T ss_dssp             HHHHHHHHHHHHHTHHS-SSHHHHHHC
T ss_pred             HHHHHHHHHHHHccccCCCCHHHHhcc
Confidence            888877777777664444346655544

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PLN02463 lycopene beta cyclase

Probab=99.91  E-value=1.6e-21  Score=198.16  Aligned_cols=288  Identities=19%  Similarity=0.220  Sum_probs=173.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEE-E
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALF-K  136 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~-~  136 (506)
                      ...+||+||||||+|+++|..|++.|++|+|+|+.+.... +....+   ..+.++++|+.+.+...    .....++ .
T Consensus        26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~-p~~~g~---w~~~l~~lgl~~~l~~~----w~~~~v~~~   97 (447)
T PLN02463         26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIW-PNNYGV---WVDEFEALGLLDCLDTT----WPGAVVYID   97 (447)
T ss_pred             ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchh-ccccch---HHHHHHHCCcHHHHHhh----CCCcEEEEe
Confidence            3458999999999999999999999999999999753211 111111   13467788887766441    1122222 2


Q ss_pred             CCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623          137 DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI  216 (506)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV  216 (506)
                      ++....         .......++|.+|.+.|.+.+.+. ++++..++|+++++++++   +.+.+++|+  +++||+||
T Consensus        98 ~~~~~~---------~~~~y~~V~R~~L~~~Ll~~~~~~-GV~~~~~~V~~I~~~~~~---~~V~~~dG~--~i~A~lVI  162 (447)
T PLN02463         98 DGKKKD---------LDRPYGRVNRKKLKSKMLERCIAN-GVQFHQAKVKKVVHEESK---SLVVCDDGV--KIQASLVL  162 (447)
T ss_pred             CCCCcc---------ccCcceeEEHHHHHHHHHHHHhhc-CCEEEeeEEEEEEEcCCe---EEEEECCCC--EEEcCEEE
Confidence            221111         011123578999999999999876 788877789999887764   445567775  46799999


Q ss_pred             eecCCcccchhhccCCCCCCccceeeEEEeccCCCCCCeeEEE-------ec--------C---CCcEEEEecCCCeEEE
Q 010623          217 VCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVV-------LA--------D---PSPILFYPISSNEVRC  278 (506)
Q Consensus       217 ~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--------~---~~~~~~~p~~~~~~~~  278 (506)
                      +|||.+|.+++.-. +.....+...++...-...+.+....++       .+        +   +.++|++|.++++..+
T Consensus       163 ~AdG~~s~l~~~~~-~~~~g~Q~a~Gi~~ev~~~p~d~~~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY~~P~~~~~~~v  241 (447)
T PLN02463        163 DATGFSRCLVQYDK-PFNPGYQVAYGILAEVDSHPFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRIFL  241 (447)
T ss_pred             ECcCCCcCccCCCC-CCCccceeeeeEEeecCCCCcccccchhhhcChhhccccchhhhccCCCCceEEEEecCCCeEEE
Confidence            99999998765321 1111112334444431111111111111       01        1   3477899999986332


Q ss_pred             EEEecCCCCCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcch
Q 010623          279 LVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGG  358 (506)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~Gq  358 (506)
                      ..+.-. ..+..+.+++++.+.+.+. ...-.+.     .+...+....|+...  .+...+|++++||||..++|.+|.
T Consensus       242 EeT~l~-s~~~~~~~~lk~~L~~~l~-~~Gi~~~-----~i~~~E~~~IPmg~~--~~~~~~~~~~~G~aag~v~p~tG~  312 (447)
T PLN02463        242 EETSLV-ARPGLPMDDIQERMVARLR-HLGIKVK-----SVEEDEKCVIPMGGP--LPVIPQRVLGIGGTAGMVHPSTGY  312 (447)
T ss_pred             Eeeeee-cCCCCCHHHHHHHHHHHHH-HCCCCcc-----eeeeeeeeEeeCCCC--CCCCCCCEEEecchhcCcCCCccc
Confidence            222100 1122344566666555432 1110000     111112233455332  223467999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhhhcC
Q 010623          359 GMTVALSDIVILRNLLRHLS  378 (506)
Q Consensus       359 G~n~ai~Da~~La~~L~~~~  378 (506)
                      |+..++..|..+|+.+.+..
T Consensus       313 ~i~~~~~~~~~~a~~~~~~~  332 (447)
T PLN02463        313 MVARTLAAAPIVADAIVEYL  332 (447)
T ss_pred             cHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998764

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=99.89  E-value=5.5e-21  Score=190.97  Aligned_cols=297  Identities=18%  Similarity=0.192  Sum_probs=168.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHH----hhcccceecceEEE
Q 010623           62 DVIVVGAGVAGAALANTLAKD--GRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCV----EQIDAQRVFGYALF  135 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~----~~~~~~~~~~~~~~  135 (506)
                      ||+|||||++|+++|+.|++.  |++|+|+|+.+.....    ..+     .+...++.+..    ..........+.++
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~----~tw-----~~~~~~~~~~~~~~~~~~v~~~W~~~~v~   71 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN----HTW-----SFFDSDLSDAQHAWLADLVQTDWPGYEVR   71 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc----ccc-----eecccccchhhhhhhhhhheEeCCCCEEE
Confidence            899999999999999999987  9999999998632211    011     11112222111    11111122223333


Q ss_pred             ECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeE
Q 010623          136 KDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLT  215 (506)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~v  215 (506)
                      .++.....         ......+++.+|.+.|.+.+..  ++ ...++|+++  +++   +|++  .+|++  ++|++|
T Consensus        72 ~~~~~~~l---------~~~Y~~I~r~~f~~~l~~~l~~--~i-~~~~~V~~v--~~~---~v~l--~dg~~--~~A~~V  130 (370)
T TIGR01789        72 FPKYRRKL---------KTAYRSMTSTRFHEGLLQAFPE--GV-ILGRKAVGL--DAD---GVDL--APGTR--INARSV  130 (370)
T ss_pred             Ccchhhhc---------CCCceEEEHHHHHHHHHHhhcc--cE-EecCEEEEE--eCC---EEEE--CCCCE--EEeeEE
Confidence            22111111         1123478889999999877643  32 223468877  333   3554  56764  669999


Q ss_pred             EeecCCcccchhhccCCCCCCccceeeEEEeccCCCCC-CeeEE---Eec-CC--CcEEEEecCCCeEEEEEEecCCCCC
Q 010623          216 IVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFE-NHGHV---VLA-DP--SPILFYPISSNEVRCLVDIPGQKVP  288 (506)
Q Consensus       216 V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~-~~--~~~~~~p~~~~~~~~~~~~~~~~~~  288 (506)
                      |+|||.+|.-...      ...+++.|+.... ..|.. +....   .+. .+  .+++++|.++++..+-.+.... .+
T Consensus       131 I~A~G~~s~~~~~------~~~Q~f~G~~~r~-~~p~~~~~~~lMD~~~~q~~g~~F~Y~lP~~~~~~lvE~T~~s~-~~  202 (370)
T TIGR01789       131 IDCRGFKPSAHLK------GGFQVFLGREMRL-QEPHGLENPIIMDATVDQLAGYRFVYVLPLGSHDLLIEDTYYAD-DP  202 (370)
T ss_pred             EECCCCCCCcccc------ceeeEEEEEEEEE-cCCCCCCccEEEeeeccCCCCceEEEECcCCCCeEEEEEEeccC-CC
Confidence            9999999752211      1235666776542 23322 21111   121 12  2556689999865543322211 23


Q ss_pred             CCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCcc---CCCCCCCCcEEEEccCCCCCCCCcchhhHHHHH
Q 010623          289 SISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSM---PAAPYPTPGALLMGDAFNMRHPLTGGGMTVALS  365 (506)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~  365 (506)
                      ..+.+..++.+.+++... .....    +.... +....|+...   .+.....++|+++|||||.++|.+|||++.+++
T Consensus       203 ~l~~~~l~~~l~~~~~~~-g~~~~----~i~~~-e~g~iPm~~~~~~~~~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~~  276 (370)
T TIGR01789       203 LLDRNALSQRIDQYARAN-GWQNG----TPVRH-EQGVLPVLLGGDFSAYQDEVRIVAIAGLRAGLTHPTTGYSLPVAVE  276 (370)
T ss_pred             CCCHHHHHHHHHHHHHHh-CCCce----EEEEe-eeeEEeeecCCCcccccccCCceeeeecccccccccccccHHHHHH
Confidence            455666666666543211 00000    00111 1234554321   111122456999999999999999999999999


Q ss_pred             HHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHH
Q 010623          366 DIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTL  407 (506)
Q Consensus       366 Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~  407 (506)
                      ||..|++.+...     +....+++..|..+|+++.......
T Consensus       277 ~a~~la~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  313 (370)
T TIGR01789       277 NADALAAQPDLS-----SEQLAAFIDSRARRHWSKTGYYRLL  313 (370)
T ss_pred             HHHHHHhccCcC-----ccchhhhhhHHHHHHHHHhHHHHHH
Confidence            999999988511     1133456788998888777655433

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=99.85  E-value=3.9e-19  Score=178.51  Aligned_cols=278  Identities=22%  Similarity=0.226  Sum_probs=171.3

Q ss_pred             cEEEECCCHHHHHHHHHH--HHCCCcEEEEecCCCCC-CcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623           62 DVIVVGAGVAGAALANTL--AKDGRRVHVIERDLSEP-DRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG  138 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~L--a~~G~~v~vvE~~~~~~-~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (506)
                      ||+||||||||+++|+.|  ++.|.+|+|+|+.+... ...+....+..      .++..+.+.   .....+..++.++
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~------~~~~~~~~v---~~~w~~~~v~~~~   71 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEK------DLGPLDSLV---SHRWSGWRVYFPD   71 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccc------cccchHHHH---heecCceEEEeCC
Confidence            899999999999999999  88899999999986541 11111111111      111111111   1233344444433


Q ss_pred             ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                      ......        ......+++.+|.+.|.+.+. .+++.+..++|++++..++   ++.+...+|+  +++|++||+|
T Consensus        72 ~~~~~~--------~~~Y~~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~---~~~v~~~~g~--~i~a~~VvDa  137 (374)
T PF05834_consen   72 GSRILI--------DYPYCMIDRADFYEFLLERAA-AGGVIRLNARVTSIEETGD---GVLVVLADGR--TIRARVVVDA  137 (374)
T ss_pred             CceEEc--------ccceEEEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEecCc---eEEEEECCCC--EEEeeEEEEC
Confidence            321111        112347899999999999999 5577777778999988877   3455677887  4679999999


Q ss_pred             cCCcccchhhccCCCCCCccceeeEEEeccCCC--CCCeeE---EEec----CCCcEEEEecCCCeEEEEEEecCCCCCC
Q 010623          219 DGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLP--FENHGH---VVLA----DPSPILFYPISSNEVRCLVDIPGQKVPS  289 (506)
Q Consensus       219 dG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~  289 (506)
                      +|..+....      ....+++.|+... .+.+  +++...   +...    ...+++++|.++++..+-.+.-... +.
T Consensus       138 ~g~~~~~~~------~~~~Q~f~G~~v~-~~~~~f~~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~fs~~-~~  209 (374)
T PF05834_consen  138 RGPSSPKAR------PLGLQHFYGWEVE-TDEPVFDPDTATLMDFRVPQSADGPSFLYVLPFSEDRALVEETSFSPR-PA  209 (374)
T ss_pred             CCccccccc------ccccceeEEEEEe-ccCCCCCCCceEEEEecccCCCCCceEEEEEEcCCCeEEEEEEEEcCC-CC
Confidence            997766211      1122466777654 2222  222111   1122    2347788999998755544333221 22


Q ss_pred             CCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHH
Q 010623          290 ISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVI  369 (506)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~  369 (506)
                      .+.+++++.+.+.+.. ..-...     .+...+....|+......+...++++.+|+|++.++|.+|.++..+.+.|..
T Consensus       210 ~~~~~~~~~l~~~l~~-~g~~~~-----~i~~~E~G~IPm~~~~~~~~~~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~  283 (374)
T PF05834_consen  210 LPEEELKARLRRYLER-LGIDDY-----EILEEERGVIPMTTGGFPPRFGQRVIRIGTAGGMVKPSTGYSFARIQRQADA  283 (374)
T ss_pred             CCHHHHHHHHHHHHHH-cCCCce-----eEEEeecceeecccCCCccccCCCeeeEEccccCCCCcccHHHHHHHHHHHH
Confidence            4455666666654432 110100     0111123345664334455556779999999999999999999999999999


Q ss_pred             HHHHhhh
Q 010623          370 LRNLLRH  376 (506)
Q Consensus       370 La~~L~~  376 (506)
                      +|..|.+
T Consensus       284 ia~~l~~  290 (374)
T PF05834_consen  284 IADALAK  290 (374)
T ss_pred             HHHHHhh
Confidence            9998885

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.60  E-value=1.3e-14  Score=137.10  Aligned_cols=141  Identities=26%  Similarity=0.271  Sum_probs=97.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccc-------cccchHHHHHHhCchhHHhhcccceecce
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGEL-------LQPGGYLKLIELGLEDCVEQIDAQRVFGY  132 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~-------l~~~~~~~l~~~g~~~~~~~~~~~~~~~~  132 (506)
                      ++||+||||||+|+++|+.|++.|++|+|+||.+.......+..       +.....+.|+++|+.              
T Consensus        25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~--------------   90 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIR--------------   90 (257)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCC--------------
Confidence            58999999999999999999999999999999875433221111       111122333333322              


Q ss_pred             EEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCC-eEEEEEEEeC----Cc-
Q 010623          133 ALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKG-TIKGVQYKTK----AG-  205 (506)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~-~v~~v~v~~~----~G-  205 (506)
                       +...               ....+.+++..+...|.+.+.+. +++++++ +|+++..+++ ++.++.+...    +| 
T Consensus        91 -~~~~---------------~~g~~~vd~~~l~~~L~~~A~~~-Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~  153 (257)
T PRK04176         91 -YKEV---------------EDGLYVADSVEAAAKLAAAAIDA-GAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGL  153 (257)
T ss_pred             -ceee---------------cCcceeccHHHHHHHHHHHHHHc-CCEEEcCceeceeeEeCCCcEEEEEEccccccccCC
Confidence             0000               00123467788999999999887 7888877 4999987655 7877776421    12 


Q ss_pred             --cEEEEEcCeEEeecCCcccchhhccC
Q 010623          206 --EELTAYAPLTIVCDGCFSNLRRSLCN  231 (506)
Q Consensus       206 --~~~~i~a~~vV~AdG~~S~vR~~l~~  231 (506)
                        +..+++|++||+|+|.+|.+.+.+..
T Consensus       154 ~~~~~~i~Ak~VI~ATG~~a~v~~~l~~  181 (257)
T PRK04176        154 HVDPLTIEAKAVVDATGHDAEVVSVLAR  181 (257)
T ss_pred             CCCcEEEEcCEEEEEeCCCcHHHHHHHH
Confidence              34578999999999999999887743

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.56  E-value=6.1e-14  Score=132.17  Aligned_cols=140  Identities=27%  Similarity=0.344  Sum_probs=95.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccc-------cccchHHHHHHhCchhHHhhcccceecce
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGEL-------LQPGGYLKLIELGLEDCVEQIDAQRVFGY  132 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~-------l~~~~~~~l~~~g~~~~~~~~~~~~~~~~  132 (506)
                      ++||+||||||+||++|+.|+++|++|+|+||++.......+..       +.....+.++++|+.              
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~--------------   86 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIR--------------   86 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCC--------------
Confidence            58999999999999999999999999999999976433221111       111112233322221              


Q ss_pred             EEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCC--eEEEEEEEeC----Cc
Q 010623          133 ALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKG--TIKGVQYKTK----AG  205 (506)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~--~v~~v~v~~~----~G  205 (506)
                       +...+               ...+..++..+.+.|.+.+.+. ++++++++ ++++..+++  ++.+|.+...    +|
T Consensus        87 -~~~~~---------------~g~~~~~~~el~~~L~~~a~e~-GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g  149 (254)
T TIGR00292        87 -YEDEG---------------DGYVVADSAEFISTLASKALQA-GAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAG  149 (254)
T ss_pred             -eeecc---------------CceEEeeHHHHHHHHHHHHHHc-CCEEECCcEEEEEEEeCCCCceEEEEeCCccccccC
Confidence             00000               0012346678899999999888 68888775 999987766  5778776321    12


Q ss_pred             ---cEEEEEcCeEEeecCCcccchhhcc
Q 010623          206 ---EELTAYAPLTIVCDGCFSNLRRSLC  230 (506)
Q Consensus       206 ---~~~~i~a~~vV~AdG~~S~vR~~l~  230 (506)
                         +..+++|++||.|||..|.+.+.+.
T Consensus       150 ~~~d~~~i~Ak~VVdATG~~a~v~~~l~  177 (254)
T TIGR00292       150 LHVDPLTQRSRVVVDATGHDAEIVAVCA  177 (254)
T ss_pred             CCCCCEEEEcCEEEEeecCCchHHHHHH
Confidence               3467899999999999998877663

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.53  E-value=1e-13  Score=122.66  Aligned_cols=137  Identities=31%  Similarity=0.332  Sum_probs=90.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCccccc-------ccccchHHHHHHhCchhHHhhcccceecce
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGE-------LLQPGGYLKLIELGLEDCVEQIDAQRVFGY  132 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~-------~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~  132 (506)
                      ++||+||||||+||++|+.|++.|++|+|+|++..+.....+.       .++..+..+|+++|+.-  .+         
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y--~~---------   85 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPY--EE---------   85 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT-----EE---------
T ss_pred             cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCcee--EE---------
Confidence            5899999999999999999999999999999987655433322       23445667777777641  00         


Q ss_pred             EEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeC-CeEEEEEEEe----CCc-
Q 010623          133 ALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEK-GTIKGVQYKT----KAG-  205 (506)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~-~~v~~v~v~~----~~G-  205 (506)
                                         .....+..+...+...|...+.+. |+++++.. |+++...+ ++|.|+.+.-    ..| 
T Consensus        86 -------------------~~~g~~v~d~~~~~s~L~s~a~~a-Gakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~gl  145 (230)
T PF01946_consen   86 -------------------YGDGYYVADSVEFTSTLASKAIDA-GAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGL  145 (230)
T ss_dssp             --------------------SSEEEES-HHHHHHHHHHHHHTT-TEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--
T ss_pred             -------------------eCCeEEEEcHHHHHHHHHHHHhcC-CCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhc
Confidence                               001112345567888888888874 89999885 99998766 8999888752    122 


Q ss_pred             --cEEEEEcCeEEeecCCcccchh
Q 010623          206 --EELTAYAPLTIVCDGCFSNLRR  227 (506)
Q Consensus       206 --~~~~i~a~~vV~AdG~~S~vR~  227 (506)
                        ...+++|++||.|||.-+.+-+
T Consensus       146 HvDPl~i~ak~ViDaTGHda~v~~  169 (230)
T PF01946_consen  146 HVDPLTIRAKVVIDATGHDAEVVR  169 (230)
T ss_dssp             T-B-EEEEESEEEE---SSSSSTS
T ss_pred             CCCcceEEEeEEEeCCCCchHHHH
Confidence              3468999999999999886543

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.52  E-value=1.5e-12  Score=131.97  Aligned_cols=216  Identities=19%  Similarity=0.169  Sum_probs=131.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC-cccccccccchHHHHHHhCch---hHHhhc------ccc-
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD-RIVGELLQPGGYLKLIELGLE---DCVEQI------DAQ-  127 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~-~~~g~~l~~~~~~~l~~~g~~---~~~~~~------~~~-  127 (506)
                      .++||+|||||+.|+.+|+.++.+|++|+|+|+++..+. .++...+-++|.+.|++..+.   +.+.+-      ... 
T Consensus        11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH~   90 (532)
T COG0578          11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPHL   90 (532)
T ss_pred             cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCccc
Confidence            579999999999999999999999999999999875443 344556888888888764332   333221      100 


Q ss_pred             --eecceEEEEC-------------------Cce----eeeecCCc-------CC-------CCCcccccccchHHHHHH
Q 010623          128 --RVFGYALFKD-------------------GNR----TQISYPLE-------KF-------HSDVAGRGFHNGRFVQRL  168 (506)
Q Consensus       128 --~~~~~~~~~~-------------------~~~----~~~~~~~~-------~~-------~~~~~~~~i~~~~l~~~L  168 (506)
                        +........+                   +..    ........       ..       ......+.++..+|....
T Consensus        91 v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~~  170 (532)
T COG0578          91 VEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAAN  170 (532)
T ss_pred             cccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHHH
Confidence              1111111111                   100    00000000       00       001122356667788888


Q ss_pred             HHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEeecCCcc-cchhhccCCCCCC--ccceeeEE
Q 010623          169 REKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFS-NLRRSLCNPKVDV--PSCFVGLV  244 (506)
Q Consensus       169 ~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S-~vR~~l~~~~~~~--~~~~~~~~  244 (506)
                      ...+.+.|...+.+.+|+++..+++ +++|++.+ .+|++++++|+.||+|+|+|+ .+++..+......  -....|..
T Consensus       171 a~~A~~~Ga~il~~~~v~~~~re~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~~~~~~~~~vr~skGsH  249 (532)
T COG0578         171 ARDAAEHGAEILTYTRVESLRREGG-VWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLEQSPHIGVRPSKGSH  249 (532)
T ss_pred             HHHHHhcccchhhcceeeeeeecCC-EEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhcccCCCCccceeccceE
Confidence            8888888555555557999999988 99999988 468899999999999999999 4677665432211  11112222


Q ss_pred             Ee-ccCCCCCCeeEEEec-CCCcEEEEecCCCe
Q 010623          245 LE-NCNLPFENHGHVVLA-DPSPILFYPISSNE  275 (506)
Q Consensus       245 ~~-~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~  275 (506)
                      +. +...+.+....+... ++...+++|..+..
T Consensus       250 lVv~~~~~~~~a~~~~~~~d~r~~f~iP~~~~~  282 (532)
T COG0578         250 LVVDKKFPINQAVINRCRKDGRIVFAIPYEGKT  282 (532)
T ss_pred             EEecccCCCCceEEeecCCCCceEEEecCCCCE
Confidence            22 222333332223333 45577888888763

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.50  E-value=3.8e-13  Score=118.11  Aligned_cols=139  Identities=27%  Similarity=0.319  Sum_probs=97.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccc-------cccchHHHHHHhCchhHHhhcccceecce
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGEL-------LQPGGYLKLIELGLEDCVEQIDAQRVFGY  132 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~-------l~~~~~~~l~~~g~~~~~~~~~~~~~~~~  132 (506)
                      +.||+||||||+||+||+.|++.|++|+|+||+-.+.....+.+       +...+.++|+++|+.-+-.          
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~----------   99 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEE----------   99 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceec----------
Confidence            47999999999999999999999999999999865544333221       2334446666666541000          


Q ss_pred             EEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCC-eEEEEEEEe----CCc-
Q 010623          133 ALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKG-TIKGVQYKT----KAG-  205 (506)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~-~v~~v~v~~----~~G-  205 (506)
                                          ....+..+-..+...|...+.+. ++.++++. |+++...++ +|.||.+.=    ..+ 
T Consensus       100 --------------------e~g~~v~ds~e~~skl~~~a~~a-Gaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~l  158 (262)
T COG1635         100 --------------------EDGYYVADSAEFASKLAARALDA-GAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGL  158 (262)
T ss_pred             --------------------CCceEEecHHHHHHHHHHHHHhc-CceeeecceEEEEEEecCCceEEEEEecchhhhccc
Confidence                                00112345556788888888887 58888885 999987766 788887631    112 


Q ss_pred             --cEEEEEcCeEEeecCCcccchhhc
Q 010623          206 --EELTAYAPLTIVCDGCFSNLRRSL  229 (506)
Q Consensus       206 --~~~~i~a~~vV~AdG~~S~vR~~l  229 (506)
                        ...+++|++||.|||.-..+-+.+
T Consensus       159 hvDPl~i~a~~VvDaTGHda~v~~~~  184 (262)
T COG1635         159 HVDPLTIRAKAVVDATGHDAEVVSFL  184 (262)
T ss_pred             ccCcceeeEEEEEeCCCCchHHHHHH
Confidence              235789999999999887665444

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=99.47  E-value=6.1e-12  Score=120.12  Aligned_cols=302  Identities=23%  Similarity=0.284  Sum_probs=164.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCCccc-ccccccchHHHHHHhCchhHHhhccccee-
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKD------GRRVHVIERDLSEPDRIV-GELLQPGGYLKLIELGLEDCVEQIDAQRV-  129 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~------G~~v~vvE~~~~~~~~~~-g~~l~~~~~~~l~~~g~~~~~~~~~~~~~-  129 (506)
                      ...+||+|||||||||++|+.|.+.      .++|+|+||......+.. |..+.|.++..|  +--|.+...-...+. 
T Consensus        74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL--~P~wke~~apl~t~vT  151 (621)
T KOG2415|consen   74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDEL--LPDWKEDGAPLNTPVT  151 (621)
T ss_pred             hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhh--CcchhhcCCccccccc
Confidence            3579999999999999999998763      579999999987765543 445666654433  111111100001111 


Q ss_pred             -cceEEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEe-eCCeEEEEEEEe----
Q 010623          130 -FGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLE-EKGTIKGVQYKT----  202 (506)
Q Consensus       130 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~-~~~~v~~v~v~~----  202 (506)
                       ..+.+.....  .+..|..........|+++-.++.+.|-+.+++. |+++.-+- +.++.. +++.|.|+...+    
T Consensus       152 ~d~~~fLt~~~--~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~-GvEiyPg~aaSevly~edgsVkGiaT~D~GI~  228 (621)
T KOG2415|consen  152 SDKFKFLTGKG--RISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEEL-GVEIYPGFAASEVLYDEDGSVKGIATNDVGIS  228 (621)
T ss_pred             ccceeeeccCc--eeecCCCcccccCCcEEEEHHHHHHHHHHHHHhh-CceeccccchhheeEcCCCcEeeEeecccccc
Confidence             1122222111  2223322122233457888899999999999999 88888774 666664 466677766432    


Q ss_pred             CCccE-------EEEEcCeEEeecCCcccchhhccCCC----CCCccceeeEEE---eccCCCCCCeeEE-----Ee-cC
Q 010623          203 KAGEE-------LTAYAPLTIVCDGCFSNLRRSLCNPK----VDVPSCFVGLVL---ENCNLPFENHGHV-----VL-AD  262 (506)
Q Consensus       203 ~~G~~-------~~i~a~~vV~AdG~~S~vR~~l~~~~----~~~~~~~~~~~~---~~~~~~~~~~~~~-----~~-~~  262 (506)
                      ++|..       .++.|+..|-|.|.+..+-+++-...    -..++. .|+-+   +..+....+.+.+     |- .+
T Consensus       229 k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qt-YglGlKEvWei~~~~~~pG~v~HT~GwPl~~  307 (621)
T KOG2415|consen  229 KDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQT-YGLGLKEVWEIDPENHNPGEVAHTLGWPLDN  307 (621)
T ss_pred             CCCCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcce-eccccceeEecChhhcCCcceeeeccCcccC
Confidence            23321       25779999999999998877663211    111111 12211   1111111111111     11 11


Q ss_pred             C--CcEEEEecCCCeEEEEEEec-CCCCCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEec--------CCc
Q 010623          263 P--SPILFYPISSNEVRCLVDIP-GQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMP--------NRS  331 (506)
Q Consensus       263 ~--~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~  331 (506)
                      .  +-.++|.+.++.+.+.+.+. .-..|.+++-..-+.++.      .+.+.+.+    +-+....+.        ...
T Consensus       308 ~tYGGsFlYh~~d~~VavGlVVgLdY~NP~lsP~~EFQk~K~------hP~i~~vl----eGgk~i~YgARaLNEGGfQs  377 (621)
T KOG2415|consen  308 DTYGGSFLYHFNDPLVAVGLVVGLDYKNPYLSPYKEFQKMKH------HPSISKVL----EGGKRIAYGARALNEGGFQS  377 (621)
T ss_pred             CccCceeEEEcCCCeEEEEEEEEecCCCCCCCHHHHHHHhhc------Ccchhhhh----cCcceeeehhhhhccCCccc
Confidence            1  23456777776555544332 222344443222222221      12233322    212111111        111


Q ss_pred             cCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHHHHhhhc
Q 010623          332 MPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHL  377 (506)
Q Consensus       332 ~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~  377 (506)
                      .+-..|  ++=+|||-+|+.++----.|..+||.++...|+.+-..
T Consensus       378 iPkl~F--PGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~a  421 (621)
T KOG2415|consen  378 IPKLVF--PGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEA  421 (621)
T ss_pred             Cccccc--CCceEeecccccccccccccchhhhhcchhHHHHHHHH
Confidence            122223  33378999999999888899999999999999887654

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.46  E-value=1.1e-12  Score=129.19  Aligned_cols=173  Identities=21%  Similarity=0.319  Sum_probs=108.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC-cccccccccchHHHHHHh----Cc------hhHHhh---
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD-RIVGELLQPGGYLKLIEL----GL------EDCVEQ---  123 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~-~~~g~~l~~~~~~~l~~~----g~------~~~~~~---  123 (506)
                      ..++||+|||||.+|..+|+..+-+|++|.++|+++..+. .+...-+-++|++.|++.    ..      .+.+.+   
T Consensus        65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKLiHGGVRYLekAi~~lD~~qyrlV~eaL~ER~~  144 (680)
T KOG0042|consen   65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYLEKAISNLDYEQYRLVKEALNERAN  144 (680)
T ss_pred             CCcccEEEECCCccCcceeehhhcccceeEEEecccccCCccccchhhhcccHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            4569999999999999999999999999999999976544 334455778888887652    11      111211   


Q ss_pred             ---cccc---------ee----------cceEEEE--CCce-e-----------eeecCCcCCCC--C---cccccccch
Q 010623          124 ---IDAQ---------RV----------FGYALFK--DGNR-T-----------QISYPLEKFHS--D---VAGRGFHNG  162 (506)
Q Consensus       124 ---~~~~---------~~----------~~~~~~~--~~~~-~-----------~~~~~~~~~~~--~---~~~~~i~~~  162 (506)
                         ....         ++          .+..+++  .|.. .           ...+|+.....  .   ......+..
T Consensus       145 lle~APhLs~~lPImlPvy~wwQvpYyw~G~K~YD~vAG~k~Lk~S~~lSk~~alE~fPmL~~~~L~Ga~VYyDGQ~nDa  224 (680)
T KOG0042|consen  145 LLEIAPHLSQPLPIMLPVYKWWQVPYYWVGLKIYDLVAGSKNLKSSYFLSKKEALEIFPMLRKDNLKGAMVYYDGQHNDA  224 (680)
T ss_pred             HhhcCccccCCcceeeehhhhhhhhheeecceeeeeeccccccccceeecHHHHHHhCccccccCceeEEEEecCCCchH
Confidence               0000         00          1111111  1111 0           11122111000  0   111234556


Q ss_pred             HHHHHHHHHHHcCCCEEEEec-eEEEEEeeC-CeEEEEEEEe-CCccEEEEEcCeEEeecCCcc-cchhhccC
Q 010623          163 RFVQRLREKAASLPNVRLEQG-TVTSLLEEK-GTIKGVQYKT-KAGEELTAYAPLTIVCDGCFS-NLRRSLCN  231 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~-~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S-~vR~~l~~  231 (506)
                      ++.-.+.-.+.++ |.++.+. +|.++..++ +++.|+.+.+ .+|++++|+|+.||+|+|.+| .+|++-..
T Consensus       225 Rmnl~vAlTA~r~-GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~Mdd~  296 (680)
T KOG0042|consen  225 RMNLAVALTAARN-GATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRKMDDE  296 (680)
T ss_pred             HHHHHHHHHHHhc-chhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHhhccc
Confidence            7777777777777 4455444 688888664 4577898887 489999999999999999999 56766544

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=99.45  E-value=4.7e-12  Score=136.77  Aligned_cols=212  Identities=20%  Similarity=0.196  Sum_probs=117.8

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCC--CCCCC-----CCC-----CCcccC-CCCCCCCcEEEEC
Q 010623            1 MADQYTWGLILGAVLGLVAVYNLGLLALYNLVMRSKSEDN--GADSL-----RKT-----PTTALN-GECPFDADVIVVG   67 (506)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~-----~~~~~~-~~~~~~~dVvIVG   67 (506)
                      |++++..+++++|++.+..+++    ++....|+..+.+.  ++..+     +..     ..+... ...+.++||+|||
T Consensus       192 l~~~~~~~~~~~t~t~a~~vr~----~l~~~GF~v~~~~~~g~kr~~~~~~~~~~~~~~~~~~w~~~~~~~~~~dVvIIG  267 (662)
T PRK01747        192 LARLARPGATLATFTSAGFVRR----GLQEAGFTVRKVKGFGRKREMLVGELEQTLPAPLAAPWFARPGSPKARDAAIIG  267 (662)
T ss_pred             HHHHhCCCCEEEEeehHHHHHH----HHHHcCCeeeecCCCchhhhhhhehhccccCCCCCCCcccCCCcCCCCCEEEEC
Confidence            4677888889999999999987    68888887654422  11111     000     001000 1111247999999


Q ss_pred             CCHHHHHHHHHHHHCCCcEEEEecCCCCCC----cccccccccc----h---HHHH-----HHhCchhHHhhccc---ce
Q 010623           68 AGVAGAALANTLAKDGRRVHVIERDLSEPD----RIVGELLQPG----G---YLKL-----IELGLEDCVEQIDA---QR  128 (506)
Q Consensus        68 gG~aGl~~A~~La~~G~~v~vvE~~~~~~~----~~~g~~l~~~----~---~~~l-----~~~g~~~~~~~~~~---~~  128 (506)
                      ||++|+++|+.|+++|++|+|+||...+..    +..| .+.+.    .   .+..     ....++..+.+...   ..
T Consensus       268 aGIaG~s~A~~La~~G~~V~VlE~~~~~~~gaSg~~~G-~l~~~~~~~~~~~~~l~~~a~~~a~~~~~~l~~~~~~~~~~  346 (662)
T PRK01747        268 GGIAGAALALALARRGWQVTLYEADEAPAQGASGNRQG-ALYPLLSKDDNALSRFFRAAFLFARRFYDALPAAGVAFDHD  346 (662)
T ss_pred             ccHHHHHHHHHHHHCCCeEEEEecCCCccccCCcCccc-ccccccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence            999999999999999999999999853221    1111 12111    0   1111     11122222221000   01


Q ss_pred             ecceE-EEECCcee-------ee-----------------ecCCcCCC---CCcccccccchHHHHHHHHHHHcCCCEEE
Q 010623          129 VFGYA-LFKDGNRT-------QI-----------------SYPLEKFH---SDVAGRGFHNGRFVQRLREKAASLPNVRL  180 (506)
Q Consensus       129 ~~~~~-~~~~~~~~-------~~-----------------~~~~~~~~---~~~~~~~i~~~~l~~~L~~~~~~~~~v~i  180 (506)
                      ..+.. +..+....       ..                 ..+.....   ..+.+..++...+...|.+.+.+  ++++
T Consensus       347 ~~G~l~~a~~~~~~~~l~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~g~~~p~~G~v~p~~l~~aL~~~a~~--Gv~i  424 (662)
T PRK01747        347 WCGVLQLAWDEKSAEKIAKMLALGLPAELARALDAEEAEELAGLPVPCGGIFYPQGGWLCPAELCRALLALAGQ--QLTI  424 (662)
T ss_pred             CCceEEeecCchHHHHHHHHHhccCchHhhhhCCHHHHHHHhCCCCCCCcEEeCCCCeeCHHHHHHHHHHhccc--CcEE
Confidence            11111 11110000       00                 00000000   01122345677899999998877  6777


Q ss_pred             Eec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCccc
Q 010623          181 EQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN  224 (506)
Q Consensus       181 ~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~  224 (506)
                      +.+ +|+++..++++   +++.+.+|..  ++||.||.|+|.+|.
T Consensus       425 ~~~~~V~~i~~~~~~---~~v~t~~g~~--~~ad~VV~A~G~~s~  464 (662)
T PRK01747        425 HFGHEVARLEREDDG---WQLDFAGGTL--ASAPVVVLANGHDAA  464 (662)
T ss_pred             EeCCEeeEEEEeCCE---EEEEECCCcE--EECCEEEECCCCCcc
Confidence            766 59999877764   4455666653  569999999999985

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.43  E-value=4.9e-11  Score=124.59  Aligned_cols=169  Identities=17%  Similarity=0.214  Sum_probs=95.6

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC-cccccccccchHHHHHHhCc--h-hHH------hhccc
Q 010623           57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD-RIVGELLQPGGYLKLIELGL--E-DCV------EQIDA  126 (506)
Q Consensus        57 ~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~-~~~g~~l~~~~~~~l~~~g~--~-~~~------~~~~~  126 (506)
                      |+.++||+|||||++|+++|+.|+++|++|+|+||++.... .+++..+-+.+.+.+....+  . +.+      .+...
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~~ss~lihgG~ryl~~~~~~l~~e~l~er~~l~~~~p   82 (508)
T PRK12266          3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSSASTKLIHGGLRYLEHYEFRLVREALAEREVLLRMAP   82 (508)
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccccccchHHHhhhccHHHHHHHHHHHHHHHHhCC
Confidence            34569999999999999999999999999999999854322 22333344455554433111  0 101      01000


Q ss_pred             ceecceEE---EEC-------------------Cce-----eeeecC---C-cCCCCC------cccccccchHHHHHHH
Q 010623          127 QRVFGYAL---FKD-------------------GNR-----TQISYP---L-EKFHSD------VAGRGFHNGRFVQRLR  169 (506)
Q Consensus       127 ~~~~~~~~---~~~-------------------~~~-----~~~~~~---~-~~~~~~------~~~~~i~~~~l~~~L~  169 (506)
                      .......+   ...                   +..     ......   . ......      +....++...+...+.
T Consensus        83 ~~~~~l~~~~~~~~~~~~~~~~~~gl~lyd~~~~~~~l~~~~~~~~~~~~~~~~L~~~l~g~~~~~dg~vd~~rl~~~l~  162 (508)
T PRK12266         83 HIIWPMRFVLPHRPHLRPAWMIRAGLFLYDHLGKRKSLPGSRGLDLGRDPAGSPLKPEITRGFEYSDCWVDDARLVVLNA  162 (508)
T ss_pred             CcccccceEEEecccccchHHHHHHHHHHHhhcCCCCCChhhhhchhhcccCCCcchhhcEEEEEcCcccCHHHHHHHHH
Confidence            00000000   000                   000     000000   0 000000      1112356667777888


Q ss_pred             HHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEeecCCccc-chh
Q 010623          170 EKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSN-LRR  227 (506)
Q Consensus       170 ~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~-vR~  227 (506)
                      +.+.+. |+++.++ +|+++..+++.+ ++++.+ .+|+..+++|+.||+|+|.|+. +++
T Consensus       163 ~~A~~~-Ga~i~~~~~V~~i~~~~~~~-~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~  221 (508)
T PRK12266        163 RDAAER-GAEILTRTRVVSARRENGLW-HVTLEDTATGKRYTVRARALVNAAGPWVKQFLD  221 (508)
T ss_pred             HHHHHc-CCEEEcCcEEEEEEEeCCEE-EEEEEEcCCCCEEEEEcCEEEECCCccHHHHHh
Confidence            888887 6677766 699998776643 466554 3566667899999999999984 444

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.43  E-value=2.3e-11  Score=127.10  Aligned_cols=169  Identities=20%  Similarity=0.234  Sum_probs=97.0

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC-cccccccccchHHHHHHhCch---hHH------hhccc
Q 010623           57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD-RIVGELLQPGGYLKLIELGLE---DCV------EQIDA  126 (506)
Q Consensus        57 ~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~-~~~g~~l~~~~~~~l~~~g~~---~~~------~~~~~  126 (506)
                      |+.++||+|||||++|+++|+.|+++|++|+|+||.+.... .++...+-+.+.+.+....+.   +.+      .+...
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~~ss~lihgg~ryl~~~~~~l~~e~~~e~~~l~~~ap   82 (502)
T PRK13369          3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYLEYYEFRLVREALIEREVLLAAAP   82 (502)
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCchhhhhhHHHHHHHHHhccHHHHHHHHHHHHHHHHhCC
Confidence            34569999999999999999999999999999999864322 122223334444444332211   111      11000


Q ss_pred             ceec--ceEEE-ECCce------------------------eeee-------cCCcC-C--CCCcccccccchHHHHHHH
Q 010623          127 QRVF--GYALF-KDGNR------------------------TQIS-------YPLEK-F--HSDVAGRGFHNGRFVQRLR  169 (506)
Q Consensus       127 ~~~~--~~~~~-~~~~~------------------------~~~~-------~~~~~-~--~~~~~~~~i~~~~l~~~L~  169 (506)
                      ....  .+.+- .....                        ..+.       .+... .  ...+....++...+...+.
T Consensus        83 ~l~~~~~~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~a~~~~dg~vd~~rl~~~l~  162 (502)
T PRK13369         83 HIIWPMRFVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAPLKPEYTKGFEYSDCWVDDARLVVLNA  162 (502)
T ss_pred             ccccccceEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCCchHhcCEEEEEcCeeecHHHHHHHHH
Confidence            0000  00000 00000                        0000       00000 0  0001112356677888888


Q ss_pred             HHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCccc-chh
Q 010623          170 EKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN-LRR  227 (506)
Q Consensus       170 ~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~-vR~  227 (506)
                      ..+.+. |+++.+. +|+++..+++. .+|++.+..|++.+++|+.||+|+|.||. +.+
T Consensus       163 ~~a~~~-Ga~i~~~~~V~~i~~~~~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~  220 (502)
T PRK13369        163 LDAAER-GATILTRTRCVSARREGGL-WRVETRDADGETRTVRARALVNAAGPWVTDVIH  220 (502)
T ss_pred             HHHHHC-CCEEecCcEEEEEEEcCCE-EEEEEEeCCCCEEEEEecEEEECCCccHHHHHh
Confidence            888888 5666666 59999877654 34666555577778999999999999984 544

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=99.41  E-value=5.7e-12  Score=131.59  Aligned_cols=166  Identities=18%  Similarity=0.179  Sum_probs=97.8

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc--cccccccchHHHHHHhCchhHHhhcc---------
Q 010623           57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI--VGELLQPGGYLKLIELGLEDCVEQID---------  125 (506)
Q Consensus        57 ~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~--~g~~l~~~~~~~l~~~g~~~~~~~~~---------  125 (506)
                      .+.++||||||||.+|+++|+.+++.|.+|+|+||.+......  .+..++....+..+..|+.+....+.         
T Consensus        58 ~~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~  137 (506)
T PRK06481         58 LKDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGG  137 (506)
T ss_pred             ccccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCC
Confidence            3457999999999999999999999999999999987543221  11122221222222223221100000         


Q ss_pred             -----------c--------ceecceEEEECCceeeeecCC-cCCC--CCcccccccchHHHHHHHHHHHcCCCEEEEec
Q 010623          126 -----------A--------QRVFGYALFKDGNRTQISYPL-EKFH--SDVAGRGFHNGRFVQRLREKAASLPNVRLEQG  183 (506)
Q Consensus       126 -----------~--------~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~  183 (506)
                                 .        ....++.+...      ..+. ....  ..+......-..+...|.+.+.+. +++++.+
T Consensus       138 ~~d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~------~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~-gv~i~~~  210 (506)
T PRK06481        138 TNDKALLRYFVDNSASAIDWLDSMGIKLDNL------TITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQER-KIPLFVN  210 (506)
T ss_pred             CCCHHHHHHHHhccHHHHHHHHHcCceEeec------ccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHc-CCeEEeC
Confidence                       0        00011111000      0000 0000  000000111234777888888877 6788777


Q ss_pred             e-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccchhhc
Q 010623          184 T-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSL  229 (506)
Q Consensus       184 ~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~~l  229 (506)
                      + ++++..+++++.+|.+...+|+..+++|+.||.|+|.++...+++
T Consensus       211 t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~  257 (506)
T PRK06481        211 ADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMI  257 (506)
T ss_pred             CeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHH
Confidence            5 999988888898998877776666799999999999998765444

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.39  E-value=2.1e-12  Score=124.27  Aligned_cols=145  Identities=26%  Similarity=0.306  Sum_probs=91.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc---ccccc---cc-hHHHHHHh--------------Cc
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIV---GELLQ---PG-GYLKLIEL--------------GL  117 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~---g~~l~---~~-~~~~l~~~--------------g~  117 (506)
                      +.+||+|||||||||.||..++++|.+|+|+|+.+....+..   |...+   .. --+++.+.              .-
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~   81 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP   81 (408)
T ss_pred             CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence            358999999999999999999999999999999987654321   11111   00 11122221              11


Q ss_pred             hhHHhhcccceecceEEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEE
Q 010623          118 EDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIK  196 (506)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~  196 (506)
                      +|.+.-+   ...++..+.....  .-||.          .-.-..+.++|..++++. +|+++..+ |.++..++.   
T Consensus        82 ~d~i~~~---e~~Gi~~~e~~~G--r~Fp~----------sdkA~~Iv~~ll~~~~~~-gV~i~~~~~v~~v~~~~~---  142 (408)
T COG2081          82 EDFIDWV---EGLGIALKEEDLG--RMFPD----------SDKASPIVDALLKELEAL-GVTIRTRSRVSSVEKDDS---  142 (408)
T ss_pred             HHHHHHH---HhcCCeeEEccCc--eecCC----------ccchHHHHHHHHHHHHHc-CcEEEecceEEeEEecCc---
Confidence            2211111   1122222211110  01111          012246889999999998 88888875 999998874   


Q ss_pred             EEEEEeCCccEEEEEcCeEEeecCCccc
Q 010623          197 GVQYKTKAGEELTAYAPLTIVCDGCFSN  224 (506)
Q Consensus       197 ~v~v~~~~G~~~~i~a~~vV~AdG~~S~  224 (506)
                      +..+.+.+|+  +++||.+|.|+|+.|.
T Consensus       143 ~f~l~t~~g~--~i~~d~lilAtGG~S~  168 (408)
T COG2081         143 GFRLDTSSGE--TVKCDSLILATGGKSW  168 (408)
T ss_pred             eEEEEcCCCC--EEEccEEEEecCCcCC
Confidence            4667788886  4779999999998883

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=99.37  E-value=1.4e-11  Score=127.58  Aligned_cols=149  Identities=21%  Similarity=0.277  Sum_probs=93.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC-CCCccccccccc----chHHHHHHhCc-h-hHHhhcccceecc
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS-EPDRIVGELLQP----GGYLKLIELGL-E-DCVEQIDAQRVFG  131 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~-~~~~~~g~~l~~----~~~~~l~~~g~-~-~~~~~~~~~~~~~  131 (506)
                      .++||+|||||+||+.||+.+++.|.+|+|+|++.. ....++...+..    ...+.++.+|- . ......    ...
T Consensus         3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~----giq   78 (618)
T PRK05192          3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKT----GIQ   78 (618)
T ss_pred             ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhc----cCc
Confidence            369999999999999999999999999999999742 111111111111    11122233331 1 111110    001


Q ss_pred             eEEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEE
Q 010623          132 YALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAY  211 (506)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~  211 (506)
                      +...+..+...         .......+++..+...|.+.+.+.+++++..++|+++..+++++.+|..  .+|.  .++
T Consensus        79 ~r~ln~skGpA---------V~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t--~dG~--~I~  145 (618)
T PRK05192         79 FRMLNTSKGPA---------VRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVT--QDGL--EFR  145 (618)
T ss_pred             eeecccCCCCc---------eeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEE--CCCC--EEE
Confidence            11111100000         0001125788888999999998888899988889999888888777764  5675  477


Q ss_pred             cCeEEeecCCccc
Q 010623          212 APLTIVCDGCFSN  224 (506)
Q Consensus       212 a~~vV~AdG~~S~  224 (506)
                      |+.||+|||.++.
T Consensus       146 Ak~VIlATGTFL~  158 (618)
T PRK05192        146 AKAVVLTTGTFLR  158 (618)
T ss_pred             CCEEEEeeCcchh
Confidence            9999999998874

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=99.35  E-value=3e-10  Score=121.13  Aligned_cols=73  Identities=23%  Similarity=0.381  Sum_probs=57.1

Q ss_pred             cccchHHHHHHHHHHHcCCCEEEEec-eEEEEEee--CCeEEEEEEEeC-CccEEEEEcCeEEeecCCccc-chhhccC
Q 010623          158 GFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEE--KGTIKGVQYKTK-AGEELTAYAPLTIVCDGCFSN-LRRSLCN  231 (506)
Q Consensus       158 ~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~--~~~v~~v~v~~~-~G~~~~i~a~~vV~AdG~~S~-vR~~l~~  231 (506)
                      .++...+...|.+.+.+. |+++++. +|+++..+  ++++.+|++.+. +|+.++++||.||+|+|+||. +++.++.
T Consensus       228 ~vdp~rl~~al~~~A~~~-Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g~  305 (627)
T PLN02464        228 QMNDSRLNVALACTAALA-GAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMADG  305 (627)
T ss_pred             EEcHHHHHHHHHHHHHhC-CcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhccC
Confidence            467778999999999988 6777766 69998876  467777887653 565567899999999999984 7776653

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=99.34  E-value=2e-11  Score=119.98  Aligned_cols=147  Identities=27%  Similarity=0.349  Sum_probs=90.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEE-ecCCCCCCcccccccccch----HHHHHHhCchhHHhhcccceecceEEEE
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVI-ERDLSEPDRIVGELLQPGG----YLKLIELGLEDCVEQIDAQRVFGYALFK  136 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vv-E~~~~~~~~~~g~~l~~~~----~~~l~~~g~~~~~~~~~~~~~~~~~~~~  136 (506)
                      ||+|||||.||+.||+.+|+.|.+|+|+ ++.+.....++...+...+    .+.++.+|-.  +..........+.+.+
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~--m~~~aD~~~i~~~~lN   78 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGL--MGRAADETGIHFRMLN   78 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-S--HHHHHHHHEEEEEEES
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhH--HHHHHhHhhhhhhccc
Confidence            8999999999999999999999999999 3333333333333332222    2333444411  1111000111111111


Q ss_pred             CCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623          137 DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI  216 (506)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV  216 (506)
                      ..+.         .........++|..+.+.+.+.+.+.+++++..++|+++..+++++.+|.  +.+|+  ++.||.||
T Consensus        79 ~skG---------pav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~--~~~g~--~~~a~~vV  145 (392)
T PF01134_consen   79 RSKG---------PAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVV--TKDGE--EIEADAVV  145 (392)
T ss_dssp             TTS----------GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEE--ETTSE--EEEECEEE
T ss_pred             ccCC---------CCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEE--eCCCC--EEecCEEE
Confidence            1100         00111223689999999999999999999999989999999999998876  56786  46799999


Q ss_pred             eecCCcc
Q 010623          217 VCDGCFS  223 (506)
Q Consensus       217 ~AdG~~S  223 (506)
                      .|+|.+.
T Consensus       146 laTGtfl  152 (392)
T PF01134_consen  146 LATGTFL  152 (392)
T ss_dssp             E-TTTGB
T ss_pred             Eeccccc
Confidence            9999954

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.33  E-value=3.8e-10  Score=114.20  Aligned_cols=167  Identities=24%  Similarity=0.273  Sum_probs=93.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC--cc--ccccccc----chH--HHHHHhCchhHHhhcc---cc
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD--RI--VGELLQP----GGY--LKLIELGLEDCVEQID---AQ  127 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~--~~--~g~~l~~----~~~--~~l~~~g~~~~~~~~~---~~  127 (506)
                      +||+|||||++|+++|+.|+++|.+|+|+|+......  .+  .+..+..    ...  ...+.+.++..+.+..   ..
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~   80 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPEDFYTPMMLECYQLWAQLEKEAGTKLH   80 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCCCCCCCCeeeeeccCchhHhHHHHHHHHHHHHHHHHhCCeeE
Confidence            6999999999999999999999999999999753211  11  1111110    001  1112223333332110   00


Q ss_pred             eecceEEEE-CCc-----------------------eeeeecCCcCCCC------CcccccccchHHHHHHHHHHHcCCC
Q 010623          128 RVFGYALFK-DGN-----------------------RTQISYPLEKFHS------DVAGRGFHNGRFVQRLREKAASLPN  177 (506)
Q Consensus       128 ~~~~~~~~~-~~~-----------------------~~~~~~~~~~~~~------~~~~~~i~~~~l~~~L~~~~~~~~~  177 (506)
                      ...+..... ...                       .....+|.-....      .+.+..++...+.+.|.+.+.+. +
T Consensus        81 ~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~P~l~~~~~~~~~~~~~~g~i~p~~~~~~l~~~~~~~-g  159 (380)
T TIGR01377        81 RQTGLLLLGPKENQFLKTIQATLSRHGLEHELLSSKQLKQRFPNIRVPRNEVGLLDPNGGVLYAEKALRALQELAEAH-G  159 (380)
T ss_pred             eecCeEEEcCCCcHHHHHHHHHHHHcCCCeEEcCHHHHHHhCCCCcCCCCceEEEcCCCcEEcHHHHHHHHHHHHHHc-C
Confidence            111111111 000                       0000011000000      12234567778889999888887 6


Q ss_pred             EEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCc-ccchhhccCCCC
Q 010623          178 VRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCF-SNLRRSLCNPKV  234 (506)
Q Consensus       178 v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~-S~vR~~l~~~~~  234 (506)
                      ++++.+ +|+++..+++.+   .+.+.+|   +++||.||.|+|.+ +.+++.++...+
T Consensus       160 ~~~~~~~~V~~i~~~~~~~---~v~~~~~---~i~a~~vV~aaG~~~~~l~~~~g~~~~  212 (380)
T TIGR01377       160 ATVRDGTKVVEIEPTELLV---TVKTTKG---SYQANKLVVTAGAWTSKLLSPLGIEIP  212 (380)
T ss_pred             CEEECCCeEEEEEecCCeE---EEEeCCC---EEEeCEEEEecCcchHHHhhhcccCCC
Confidence            777777 599998776643   3445555   36799999999987 567877765433

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.33  E-value=2.4e-11  Score=121.61  Aligned_cols=70  Identities=29%  Similarity=0.379  Sum_probs=52.5

Q ss_pred             cccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccc-hhhccC
Q 010623          156 GRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNL-RRSLCN  231 (506)
Q Consensus       156 ~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~v-R~~l~~  231 (506)
                      +..++...+.+.|.+.+++. |++++.+ +|+++..+++++.+|.  +++|+   ++||.||.|+|.+|.. .+.++.
T Consensus       141 ~g~i~~~~l~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~v~gv~--~~~g~---i~ad~vV~a~G~~s~~l~~~~~~  212 (358)
T PF01266_consen  141 GGVIDPRRLIQALAAEAQRA-GVEIRTGTEVTSIDVDGGRVTGVR--TSDGE---IRADRVVLAAGAWSPQLLPLLGL  212 (358)
T ss_dssp             EEEEEHHHHHHHHHHHHHHT-T-EEEESEEEEEEEEETTEEEEEE--ETTEE---EEECEEEE--GGGHHHHHHTTTT
T ss_pred             cccccccchhhhhHHHHHHh-hhhccccccccchhhccccccccc--ccccc---cccceeEecccccceeeeecccc
Confidence            44567789999999999998 7899888 6999999999755454  67774   6799999999999854 444443

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK07121 hypothetical protein; Validated

Probab=99.29  E-value=1.1e-10  Score=121.99  Aligned_cols=66  Identities=26%  Similarity=0.418  Sum_probs=51.1

Q ss_pred             hHHHHHHHHHHHcCCCEEEEece-EEEEEee-CCeEEEEEEEeCCccEEEEEc-CeEEeecCCcccchhhc
Q 010623          162 GRFVQRLREKAASLPNVRLEQGT-VTSLLEE-KGTIKGVQYKTKAGEELTAYA-PLTIVCDGCFSNLRRSL  229 (506)
Q Consensus       162 ~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~-~~~v~~v~v~~~~G~~~~i~a-~~vV~AdG~~S~vR~~l  229 (506)
                      ..+...|.+.+++. +++++.++ ++++..+ ++++.+|.+.. +++..+++| +.||.|+|.++.-++++
T Consensus       177 ~~~~~~L~~~~~~~-gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-~~~~~~i~a~k~VVlAtGg~~~N~em~  245 (492)
T PRK07121        177 AMLMDPLAKRAAAL-GVQIRYDTRATRLIVDDDGRVVGVEARR-YGETVAIRARKGVVLAAGGFAMNREMV  245 (492)
T ss_pred             HHHHHHHHHHHHhC-CCEEEeCCEEEEEEECCCCCEEEEEEEe-CCcEEEEEeCCEEEECCCCcCcCHHHH
Confidence            35778888888887 67877774 9999876 46888888754 555567889 99999999999755444

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.29  E-value=9.3e-11  Score=123.50  Aligned_cols=74  Identities=19%  Similarity=0.190  Sum_probs=57.4

Q ss_pred             ccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEeecCCccc-chhhccC
Q 010623          157 RGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSN-LRRSLCN  231 (506)
Q Consensus       157 ~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~-vR~~l~~  231 (506)
                      ..++...+...+...+.++ |+++.++ +|+++..+++++++|++.+ .+|+..+++|+.||.|+|.||. +.++.+.
T Consensus       144 g~vdp~rl~~al~~~A~~~-Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g~  220 (546)
T PRK11101        144 GTVDPFRLTAANMLDAKEH-GAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYADL  220 (546)
T ss_pred             cEECHHHHHHHHHHHHHhC-CCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcCC
Confidence            3567778888888888888 6677666 5999998888888888765 3555567899999999999984 5555554

>PLN02661 Putative thiazole synthesis

Probab=99.28  E-value=8.5e-11  Score=113.82  Aligned_cols=136  Identities=26%  Similarity=0.324  Sum_probs=88.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCCccc--ccccc-----cchHHHHHHhCchhHHhhcccceec
Q 010623           59 FDADVIVVGAGVAGAALANTLAKD-GRRVHVIERDLSEPDRIV--GELLQ-----PGGYLKLIELGLEDCVEQIDAQRVF  130 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~-G~~v~vvE~~~~~~~~~~--g~~l~-----~~~~~~l~~~g~~~~~~~~~~~~~~  130 (506)
                      .++||+|||||++|+++|+.|++. |++|+|+||.........  +..++     ....+.|+++|+.-  ..     ..
T Consensus        91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~f--d~-----~d  163 (357)
T PLN02661         91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPY--DE-----QE  163 (357)
T ss_pred             ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCc--cc-----CC
Confidence            468999999999999999999986 899999999865432111  11111     11233444444320  00     00


Q ss_pred             ceEEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEE------eC
Q 010623          131 GYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYK------TK  203 (506)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~------~~  203 (506)
                      ++                       ....+...+...|.+.+.+.++++++++. ++++..+++++.||.+.      ..
T Consensus       164 gy-----------------------~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~  220 (357)
T PLN02661        164 NY-----------------------VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNH  220 (357)
T ss_pred             Ce-----------------------eEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhcc
Confidence            00                       00112235567888877776789999885 99999888888888752      11


Q ss_pred             -Cc---cEEEEEcCeEEeecCCccc
Q 010623          204 -AG---EELTAYAPLTIVCDGCFSN  224 (506)
Q Consensus       204 -~G---~~~~i~a~~vV~AdG~~S~  224 (506)
                       ++   +...++|+.||.|+|..++
T Consensus       221 ~~~s~~dp~~I~AkaVVlATGh~g~  245 (357)
T PLN02661        221 DTQSCMDPNVMEAKVVVSSCGHDGP  245 (357)
T ss_pred             CCCCccceeEEECCEEEEcCCCCCc
Confidence             11   3346899999999996654

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=99.27  E-value=2.1e-12  Score=132.12  Aligned_cols=153  Identities=26%  Similarity=0.228  Sum_probs=36.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccc---cccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGEL---LQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG  138 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~---l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (506)
                      |||||||||+|++||+.+++.|.+|+|+||.+..........   +..........-|+..++.+.... ..... ....
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~-~~~~~-~~~~   78 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRA-RGGYP-QEDR   78 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhh-hcccc-cccc
Confidence            899999999999999999999999999999976543322211   111111111122344333331111 00000 0000


Q ss_pred             ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEe
Q 010623          139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV  217 (506)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~  217 (506)
                          .        .......+++..+...|.+.+.+. +++++.++ |+++..+++++.+|++.+.+| ..+++|+++|+
T Consensus        79 ----~--------~~~~~~~~~~~~~~~~l~~~l~e~-gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g-~~~i~A~~~ID  144 (428)
T PF12831_consen   79 ----Y--------GWVSNVPFDPEVFKAVLDEMLAEA-GVEVLLGTRVVDVIRDGGRITGVIVETKSG-RKEIRAKVFID  144 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----c--------cccccccccccccccccccccccc-cccccccccccccccccccccccccccccc-ccccccccccc
Confidence                0        000012355566677777777664 89998886 999999998999999987777 56899999999


Q ss_pred             ecCCcccchhhccC
Q 010623          218 CDGCFSNLRRSLCN  231 (506)
Q Consensus       218 AdG~~S~vR~~l~~  231 (506)
                      |+|- +.+-...|.
T Consensus       145 aTG~-g~l~~~aG~  157 (428)
T PF12831_consen  145 ATGD-GDLAALAGA  157 (428)
T ss_dssp             --------------
T ss_pred             cccc-ccccccccc
Confidence            9994 445444444

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=99.26  E-value=7.8e-11  Score=121.47  Aligned_cols=166  Identities=22%  Similarity=0.280  Sum_probs=94.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC-CcEEEEecCCCCCCcc--cccccccchHHHHHHhCchhHHhhc--------------
Q 010623           62 DVIVVGAGVAGAALANTLAKDG-RRVHVIERDLSEPDRI--VGELLQPGGYLKLIELGLEDCVEQI--------------  124 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G-~~v~vvE~~~~~~~~~--~g~~l~~~~~~~l~~~g~~~~~~~~--------------  124 (506)
                      ||||||||++|+++|+.++++| .+|+|+||.+.....+  .+..+........+..|+.+....+              
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   80 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP   80 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence            8999999999999999999999 9999999987543221  1222222222222222322111100              


Q ss_pred             ------ccceecceEEEEC-Cceeeeec---C-CcCCCC--CcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEe
Q 010623          125 ------DAQRVFGYALFKD-GNRTQISY---P-LEKFHS--DVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLE  190 (506)
Q Consensus       125 ------~~~~~~~~~~~~~-~~~~~~~~---~-~~~~~~--~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~  190 (506)
                            .......+. |.. +-......   . ......  .+.........+...|.+.+++. +++++.++ ++++..
T Consensus        81 ~l~~~~~~~~~~~i~-wl~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~-gv~i~~~~~v~~l~~  158 (439)
T TIGR01813        81 ELVRILAEESADAVD-WLQDGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKE-GIDTRLNSKVEDLIQ  158 (439)
T ss_pred             HHHHHHHhccHHHHH-HHHhCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHc-CCEEEeCCEeeEeEE
Confidence                  000000000 000 00000000   0 000000  00001122346888899988887 67888774 999987


Q ss_pred             e-CCeEEEEEEEeCCccEEEEEcCeEEeecCCcccchhhc
Q 010623          191 E-KGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSL  229 (506)
Q Consensus       191 ~-~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~~l  229 (506)
                      + ++++++|++.+.+++...+.++.||.|+|.++...+++
T Consensus       159 ~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m~  198 (439)
T TIGR01813       159 DDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEMI  198 (439)
T ss_pred             CCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHHH
Confidence            5 56788888877777656678999999999999754443

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.25  E-value=1.1e-10  Score=117.29  Aligned_cols=144  Identities=29%  Similarity=0.346  Sum_probs=76.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc----c------------cccc------cchHHHHHHhCch
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIV----G------------ELLQ------PGGYLKLIELGLE  118 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~----g------------~~l~------~~~~~~l~~~g~~  118 (506)
                      |||+|||||||||+||+.|++.|.+|+|+||++....+..    |            ....      .-....|++++..
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~   80 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE   80 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence            7999999999999999999999999999999976543110    0            0000      0112344455444


Q ss_pred             hHHhhcccceecceEEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEE
Q 010623          119 DCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKG  197 (506)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~  197 (506)
                      +.+.-+.   ..++........  ..||.          .-.-..+.++|++.+.+. +++++.++ |.++..+++++..
T Consensus        81 d~~~ff~---~~Gv~~~~~~~g--r~fP~----------s~~a~~Vv~~L~~~l~~~-gv~i~~~~~V~~i~~~~~~~f~  144 (409)
T PF03486_consen   81 DLIAFFE---ELGVPTKIEEDG--RVFPK----------SDKASSVVDALLEELKRL-GVEIHFNTRVKSIEKKEDGVFG  144 (409)
T ss_dssp             HHHHHHH---HTT--EEE-STT--EEEET----------T--HHHHHHHHHHHHHHH-T-EEE-S--EEEEEEETTEEEE
T ss_pred             HHHHHHH---hcCCeEEEcCCC--EECCC----------CCcHHHHHHHHHHHHHHc-CCEEEeCCEeeeeeecCCceeE
Confidence            3332211   122222111000  01111          112246788999999887 88998885 9999988886444


Q ss_pred             EEEEeCCccEEEEEcCeEEeecCCccc
Q 010623          198 VQYKTKAGEELTAYAPLTIVCDGCFSN  224 (506)
Q Consensus       198 v~v~~~~G~~~~i~a~~vV~AdG~~S~  224 (506)
                      |.  .++++  ++.||.||.|+|+.|.
T Consensus       145 v~--~~~~~--~~~a~~vILAtGG~S~  167 (409)
T PF03486_consen  145 VK--TKNGG--EYEADAVILATGGKSY  167 (409)
T ss_dssp             EE--ETTTE--EEEESEEEE----SSS
T ss_pred             ee--ccCcc--cccCCEEEEecCCCCc
Confidence            44  44444  4679999999998873

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.25  E-value=7.2e-11  Score=122.68  Aligned_cols=67  Identities=25%  Similarity=0.313  Sum_probs=53.3

Q ss_pred             hHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccchhhc
Q 010623          162 GRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSL  229 (506)
Q Consensus       162 ~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~~l  229 (506)
                      ..+...|.+.+++. +++++.+ +|+++..+++++++|.+...+|+..+++|+.||.|+|.++..++++
T Consensus       131 ~~l~~~l~~~~~~~-gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~~~  198 (466)
T PRK08274        131 KALVNALYRSAERL-GVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGFESNREWL  198 (466)
T ss_pred             HHHHHHHHHHHHHC-CCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCCCCCHHHH
Confidence            35778888888887 6788777 5999988888888888765667666789999999999988765544

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.25  E-value=1.4e-09  Score=109.87  Aligned_cols=60  Identities=18%  Similarity=0.121  Sum_probs=45.1

Q ss_pred             cccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCccc
Q 010623          158 GFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN  224 (506)
Q Consensus       158 ~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~  224 (506)
                      .++...+...+.+.+.+. +++++.+ +|+++..+++.   +.+.+++|   +++||.||.|+|.++.
T Consensus       145 ~v~p~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~---~~v~~~~g---~~~a~~vV~A~G~~~~  205 (376)
T PRK11259        145 FLRPELAIKAHLRLAREA-GAELLFNEPVTAIEADGDG---VTVTTADG---TYEAKKLVVSAGAWVK  205 (376)
T ss_pred             EEcHHHHHHHHHHHHHHC-CCEEECCCEEEEEEeeCCe---EEEEeCCC---EEEeeEEEEecCcchh
Confidence            456667777788777776 7788766 59999887663   44556666   3679999999999874

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=99.25  E-value=7.9e-11  Score=120.73  Aligned_cols=63  Identities=27%  Similarity=0.403  Sum_probs=51.8

Q ss_pred             chHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEeecCCccc
Q 010623          161 NGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSN  224 (506)
Q Consensus       161 ~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~  224 (506)
                      -..+...|.+.+++. +++++.++ ++++..++++|+||.+.+ .+|+.++++|+.||.|+|.++.
T Consensus       140 g~~~~~~l~~~~~~~-gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  140 GKALIEALAKAAEEA-GVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             HHHHHHHHHHHHHHT-TEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred             HHHHHHHHHHHHhhc-CeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence            456888999999998 59999886 999999999999999984 6788888999999999999996

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.24  E-value=1.1e-09  Score=112.16  Aligned_cols=61  Identities=36%  Similarity=0.419  Sum_probs=45.3

Q ss_pred             cccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCccc
Q 010623          158 GFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN  224 (506)
Q Consensus       158 ~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~  224 (506)
                      .++...+...|.+.+.+. |++++.+ +|++++.+++++.+|+  ++++   +++||.||.|+|.+|.
T Consensus       197 ~~~p~~~~~~l~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~v~--t~~~---~~~a~~VV~a~G~~~~  258 (416)
T PRK00711        197 TGDCQLFTQRLAAMAEQL-GVKFRFNTPVDGLLVEGGRITGVQ--TGGG---VITADAYVVALGSYST  258 (416)
T ss_pred             cCCHHHHHHHHHHHHHHC-CCEEEcCCEEEEEEecCCEEEEEE--eCCc---EEeCCEEEECCCcchH
Confidence            345557888888888887 6777776 5999988777654343  4444   3679999999999984

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.24  E-value=1.8e-09  Score=110.30  Aligned_cols=110  Identities=16%  Similarity=0.051  Sum_probs=61.6

Q ss_pred             cccchHHHHHHHHHHHcCCCEEEEec-eEEEEEee-CCeEEEEEEEeCCccEEEEEcCeEEeecCCcc-cchhhccCCCC
Q 010623          158 GFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEE-KGTIKGVQYKTKAGEELTAYAPLTIVCDGCFS-NLRRSLCNPKV  234 (506)
Q Consensus       158 ~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~-~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S-~vR~~l~~~~~  234 (506)
                      .++...+...|.+.+.+. |+++..+ +|+++..+ ++++.+  +.+.+|+   ++|+.||.|.|+++ .+++.++...+
T Consensus       179 ~v~p~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~~~--v~t~~g~---i~a~~vVvaagg~~~~l~~~~g~~~~  252 (407)
T TIGR01373       179 TARHDAVAWGYARGADRR-GVDIIQNCEVTGFIRRDGGRVIG--VETTRGF---IGAKKVGVAVAGHSSVVAAMAGFRLP  252 (407)
T ss_pred             cCCHHHHHHHHHHHHHHC-CCEEEeCCEEEEEEEcCCCcEEE--EEeCCce---EECCEEEECCChhhHHHHHHcCCCCC
Confidence            445566777888888887 6777776 69999754 454433  3455663   67987766666565 67777665433


Q ss_pred             CCccceeeEEEeccCCCCCCeeEEEecCCCcEEEEecCCCeE
Q 010623          235 DVPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEV  276 (506)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  276 (506)
                      ........++ .. ..+.. ...++..+...+++.|..+++.
T Consensus       253 ~~~~~~~~~~-~~-~~~~~-~~~~~~~~~~~~y~~p~~~g~~  291 (407)
T TIGR01373       253 IESHPLQALV-SE-PLKPI-IDTVVMSNAVHFYVSQSDKGEL  291 (407)
T ss_pred             cCcccceEEE-ec-CCCCC-cCCeEEeCCCceEEEEcCCceE
Confidence            2222222122 21 11111 1112333445567778776643

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.23  E-value=2.5e-09  Score=109.43  Aligned_cols=70  Identities=26%  Similarity=0.276  Sum_probs=47.2

Q ss_pred             ccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCcc-EEEEEcCeEEeecCCccc-chhhcc
Q 010623          159 FHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGE-ELTAYAPLTIVCDGCFSN-LRRSLC  230 (506)
Q Consensus       159 i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~-~~~i~a~~vV~AdG~~S~-vR~~l~  230 (506)
                      ++...+...|.+.+.+. |++++++ +|+++..+++.+. +.+.+.++. ..+++||.||.|+|.+|. +.+.++
T Consensus       194 ~~~~~~~~~l~~~a~~~-G~~i~~~~~V~~i~~~~~~~~-v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~  266 (410)
T PRK12409        194 GDIHKFTTGLAAACARL-GVQFRYGQEVTSIKTDGGGVV-LTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAMLG  266 (410)
T ss_pred             cCHHHHHHHHHHHHHhC-CCEEEcCCEEEEEEEeCCEEE-EEEEcCCCCccceEecCEEEECCCcChHHHHHHhC
Confidence            34456778888888888 6788776 5999987776543 433332210 124779999999999984 444444

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.21  E-value=7e-10  Score=112.67  Aligned_cols=69  Identities=22%  Similarity=0.181  Sum_probs=52.0

Q ss_pred             ccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcc-cchhhccCC
Q 010623          157 RGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFS-NLRRSLCNP  232 (506)
Q Consensus       157 ~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S-~vR~~l~~~  232 (506)
                      ..++...+.+.|.+.+.+. |++++.+ +|+++..++++   +.+.+.+|   +++||.||.|+|.+| .+.+.++.+
T Consensus       144 g~vd~~~l~~aL~~~~~~~-Gv~i~~~~~V~~i~~~~~~---~~V~~~~g---~i~ad~vV~A~G~~s~~l~~~~g~~  214 (393)
T PRK11728        144 GIVDYRAVAEAMAELIQAR-GGEIRLGAEVTALDEHANG---VVVRTTQG---EYEARTLINCAGLMSDRLAKMAGLE  214 (393)
T ss_pred             eEECHHHHHHHHHHHHHhC-CCEEEcCCEEEEEEecCCe---EEEEECCC---EEEeCEEEECCCcchHHHHHHhCCC
Confidence            4567788999999999887 6777777 59998877664   34445555   367999999999999 466666654

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.19  E-value=3.5e-10  Score=116.96  Aligned_cols=77  Identities=19%  Similarity=0.187  Sum_probs=56.1

Q ss_pred             cccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEE-eCCccEEEEEcCeEEeecCCcc-cchhhccCC
Q 010623          156 GRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYK-TKAGEELTAYAPLTIVCDGCFS-NLRRSLCNP  232 (506)
Q Consensus       156 ~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~-~~~G~~~~i~a~~vV~AdG~~S-~vR~~l~~~  232 (506)
                      ...++...+...|.+.+.+. |++++++ +|+++.+++++.+.+++. ..+|+..+++||+||.|.|.+| .+++.++++
T Consensus       172 ~g~Vdp~~l~~aL~~~a~~~-Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~  250 (483)
T TIGR01320       172 GTDVDFGALTKQLLGYLVQN-GTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIP  250 (483)
T ss_pred             CEEECHHHHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcCCC
Confidence            34577888999999999887 7788877 599998765432224433 2445444688999999999988 678888776


Q ss_pred             C
Q 010623          233 K  233 (506)
Q Consensus       233 ~  233 (506)
                      .
T Consensus       251 ~  251 (483)
T TIGR01320       251 E  251 (483)
T ss_pred             c
Confidence            3

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.18  E-value=4.6e-10  Score=116.15  Aligned_cols=77  Identities=22%  Similarity=0.223  Sum_probs=56.3

Q ss_pred             cccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEE-eCCccEEEEEcCeEEeecCCcc-cchhhccCC
Q 010623          156 GRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYK-TKAGEELTAYAPLTIVCDGCFS-NLRRSLCNP  232 (506)
Q Consensus       156 ~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~-~~~G~~~~i~a~~vV~AdG~~S-~vR~~l~~~  232 (506)
                      +..++...+.+.|.+.+++.++++++.++ |+++..++++.+.+++. ..+|+..+++|++||.|.|++| .+++.++++
T Consensus       177 ~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi~  256 (494)
T PRK05257        177 GTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSGIP  256 (494)
T ss_pred             ceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcCCC
Confidence            34677889999999999988668888874 99998755532224443 2445434578999999999987 577777765

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=99.18  E-value=5.3e-10  Score=118.81  Aligned_cols=64  Identities=20%  Similarity=0.353  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEeecCCcccchh
Q 010623          163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNLRR  227 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~vR~  227 (506)
                      .+...|.+.+.+. +++++.++ ++++..+++++.||.+.+ .+|+...++|+.||.|+|++|.+..
T Consensus       130 ~i~~~L~~~~~~~-gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~~~  195 (566)
T TIGR01812       130 ALLHTLYEQCLKL-GVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRIYK  195 (566)
T ss_pred             HHHHHHHHHHHHc-CCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcccCCCC
Confidence            4677888888877 78888775 999998888898888754 5677667899999999999997654

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=99.17  E-value=1.9e-10  Score=121.59  Aligned_cols=67  Identities=19%  Similarity=0.228  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHH---cCCCEEEEece-EEEEEeeCCeEEEEEEEe--C------------CccEEEEEcCeEEeecCCccc
Q 010623          163 RFVQRLREKAA---SLPNVRLEQGT-VTSLLEEKGTIKGVQYKT--K------------AGEELTAYAPLTIVCDGCFSN  224 (506)
Q Consensus       163 ~l~~~L~~~~~---~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~--~------------~G~~~~i~a~~vV~AdG~~S~  224 (506)
                      .+...|.+.++   +.++++++.++ ++++..++++|+||.+.+  .            +++.+++.|+.||.|+|.++.
T Consensus       149 ~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~~  228 (549)
T PRK12834        149 GVVEPFERRVREAAARGLVRFRFRHRVDELVVTDGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIGG  228 (549)
T ss_pred             HHHHHHHHHHHHHHHhCCceEEecCEeeEEEEeCCEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCccc
Confidence            35566666554   34568988885 999998888999998642  1            123457899999999999998


Q ss_pred             chhhc
Q 010623          225 LRRSL  229 (506)
Q Consensus       225 vR~~l  229 (506)
                      .++++
T Consensus       229 n~em~  233 (549)
T PRK12834        229 NHELV  233 (549)
T ss_pred             CHHHH
Confidence            76654

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=99.17  E-value=5.9e-10  Score=118.67  Aligned_cols=157  Identities=18%  Similarity=0.213  Sum_probs=92.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCCCCccccc---ccc----cc-hHH-HHH---Hh--Cchh--H
Q 010623           59 FDADVIVVGAGVAGAALANTLAKD--GRRVHVIERDLSEPDRIVGE---LLQ----PG-GYL-KLI---EL--GLED--C  120 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~~~~~~~~g~---~l~----~~-~~~-~l~---~~--g~~~--~  120 (506)
                      .++||+|||||+|||+||+.+++.  |.+|+|+||.+.......+.   .++    .. ..+ .++   +.  ++.+  .
T Consensus        10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~l   89 (608)
T PRK06854         10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDL   89 (608)
T ss_pred             eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHH
Confidence            358999999999999999999998  99999999986432211111   111    10 111 111   01  1100  0


Q ss_pred             Hhhc--------ccceecceEEEEC--CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEE
Q 010623          121 VEQI--------DAQRVFGYALFKD--GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLL  189 (506)
Q Consensus       121 ~~~~--------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~  189 (506)
                      +..+        ......++.+...  +..    +.     .......+....+...|.+.+.+.++++++.++ ++++.
T Consensus        90 v~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~----~~-----~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li  160 (608)
T PRK06854         90 VYDIARHVDSVVHLFEEWGLPIWKDENGKY----VR-----RGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLL  160 (608)
T ss_pred             HHHHHHhHHHHHHHHHHcCCeeeecCCCCc----cc-----cCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEE
Confidence            0000        0001122222211  110    00     000000123345778888888887668888885 99998


Q ss_pred             eeCCeEEEEEEE-eCCccEEEEEcCeEEeecCCccc
Q 010623          190 EEKGTIKGVQYK-TKAGEELTAYAPLTIVCDGCFSN  224 (506)
Q Consensus       190 ~~~~~v~~v~v~-~~~G~~~~i~a~~vV~AdG~~S~  224 (506)
                      .+++++.||.+. ..+|+..+++|+.||.|+|+++.
T Consensus       161 ~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~  196 (608)
T PRK06854        161 VDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAAG  196 (608)
T ss_pred             EeCCEEEEEEEEEccCCcEEEEECCEEEECCCchhh
Confidence            777888888753 35676667899999999999885

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=99.17  E-value=6e-10  Score=117.85  Aligned_cols=64  Identities=19%  Similarity=0.252  Sum_probs=52.9

Q ss_pred             hHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEeecCCcccc
Q 010623          162 GRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL  225 (506)
Q Consensus       162 ~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~v  225 (506)
                      ..+...|.+.+.+.++++++.++ ++++..+++++.||.+.+ .+|+...++|+.||.|||++|.+
T Consensus       132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~  197 (580)
T TIGR01176       132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV  197 (580)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence            35788888888776688888775 999998888999988654 57877789999999999999965

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>TIGR00551 nadB L-aspartate oxidase

Probab=99.17  E-value=7.1e-10  Score=115.55  Aligned_cols=65  Identities=26%  Similarity=0.344  Sum_probs=52.4

Q ss_pred             hHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccchh
Q 010623          162 GRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRR  227 (506)
Q Consensus       162 ~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~  227 (506)
                      ..+...|.+.+.+.++++++.++ ++++..+++++.++.+.+. ++...++|+.||.|+|++|.+..
T Consensus       128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~-~~~~~i~A~~VVlAtGG~~~~~~  193 (488)
T TIGR00551       128 REVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNR-ETVETCHADAVVLATGGAGKLYQ  193 (488)
T ss_pred             HHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEEC-CcEEEEEcCEEEECCCcccCCCC
Confidence            46888899988875689998885 9999887788888877655 44456889999999999998654

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK06175 L-aspartate oxidase; Provisional

Probab=99.17  E-value=5.3e-10  Score=114.48  Aligned_cols=161  Identities=19%  Similarity=0.264  Sum_probs=89.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc--cccccc-----chHHHHHHh---Cc---h-hHHhhc
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIV--GELLQP-----GGYLKLIEL---GL---E-DCVEQI  124 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~--g~~l~~-----~~~~~l~~~---g~---~-~~~~~~  124 (506)
                      .++||||||+|.|||+||+.++ .|.+|+|+||.+.....+.  +..+..     .....++.+   +-   . +.+..+
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s~~a~ggi~~~~~~d~~~~~~~d~~~~g~~~~d~~lv~~~   81 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNTYLAQGGISVARNKDDITSFVEDTLKAGQYENNLEAVKIL   81 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCchHHHhHhheeCCCCCCHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            4689999999999999999985 7999999999865433211  111110     001111110   10   0 000000


Q ss_pred             --------ccceecceEEEECCceeeeecCCcCCCCCcccccc-----cchHHHHHHHHHHHcCCCEEEEece-EEEEEe
Q 010623          125 --------DAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGF-----HNGRFVQRLREKAASLPNVRLEQGT-VTSLLE  190 (506)
Q Consensus       125 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~  190 (506)
                              ......++.+......  ..+...  ......+.+     .-..+...|.+.+.+..+++++.++ ++++..
T Consensus        82 ~~~s~e~i~wL~~~Gv~f~~~~~~--~~~~~~--g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~  157 (433)
T PRK06175         82 ANESIENINKLIDMGLNFDKDEKE--LSYTKE--GAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIE  157 (433)
T ss_pred             HHHHHHHHHHHHHcCCccccCCCc--eeeecc--CccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEe
Confidence                    0000112222111100  001000  000000111     1235778888888765588998885 999988


Q ss_pred             eCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccc
Q 010623          191 EKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNL  225 (506)
Q Consensus       191 ~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~v  225 (506)
                      +++++.+|.+.. +|+.++++|+.||.|+|+.+.+
T Consensus       158 ~~~~v~Gv~~~~-~g~~~~i~Ak~VILAtGG~~~l  191 (433)
T PRK06175        158 NDNTCIGAICLK-DNKQINIYSKVTILATGGIGGL  191 (433)
T ss_pred             cCCEEEEEEEEE-CCcEEEEEcCeEEEccCccccc
Confidence            788888877654 4555578899999999998753

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=99.16  E-value=6.5e-10  Score=117.86  Aligned_cols=64  Identities=14%  Similarity=0.266  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEeecCCcccch
Q 010623          163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNLR  226 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~vR  226 (506)
                      .+...|.+.+.+.++++++..+ ++++..+++++.||.+.+ .+|+...++|+.||.|||++|.+-
T Consensus       134 ~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l~  199 (582)
T PRK09231        134 HMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVY  199 (582)
T ss_pred             HHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCCC
Confidence            5778888888776688888775 999998888898887643 677767899999999999999764

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.15  E-value=5.3e-10  Score=118.24  Aligned_cols=62  Identities=15%  Similarity=0.188  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeC-CccEEEEEcCeEEeecCCcccc
Q 010623          163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTK-AGEELTAYAPLTIVCDGCFSNL  225 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~-~G~~~~i~a~~vV~AdG~~S~v  225 (506)
                      .+...|.+.+.+. ++++..++ ++++..++++|.||.+.+. +|+...++|+.||.|+|+++.+
T Consensus       137 ~i~~~L~~~~~~~-gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~l  200 (566)
T PRK06452        137 ALLHTLFERTSGL-NVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMGML  200 (566)
T ss_pred             HHHHHHHHHHHhC-CCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccccc
Confidence            4677888888776 78888875 9999988899999988764 6666788999999999999854

>TIGR00136 gidA glucose-inhibited division protein A

Probab=99.13  E-value=1.3e-09  Score=112.94  Aligned_cols=154  Identities=21%  Similarity=0.245  Sum_probs=94.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC-Cccccc---ccccc-hHHHHHHhCc-hhHHhhcccceecceEE
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP-DRIVGE---LLQPG-GYLKLIELGL-EDCVEQIDAQRVFGYAL  134 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~-~~~~g~---~l~~~-~~~~l~~~g~-~~~~~~~~~~~~~~~~~  134 (506)
                      +||+|||||++|+.+|..+++.|.+|+|+|++.... ...+..   ++... ..+.++.+|- ...+...   ....+..
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~---~~i~~r~   77 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADK---AGLQFRV   77 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHh---hceehee
Confidence            699999999999999999999999999999974321 111110   11111 1223333331 1111110   0011111


Q ss_pred             EECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEee-CCeEEEEEEEeCCccEEEEEcC
Q 010623          135 FKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEE-KGTIKGVQYKTKAGEELTAYAP  213 (506)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~-~~~v~~v~v~~~~G~~~~i~a~  213 (506)
                      .+..+.        . ........+++..+...|.+.+.+.+++++..++|+++..+ ++++.+|..  .+|.  .++|+
T Consensus        78 ln~skg--------p-AV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t--~~G~--~I~Ad  144 (617)
T TIGR00136        78 LNSSKG--------P-AVRATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVT--QDGL--KFRAK  144 (617)
T ss_pred             cccCCC--------C-cccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEE--CCCC--EEECC
Confidence            111000        0 00111236788889999999999998999998888888765 666766664  5665  47799


Q ss_pred             eEEeecCCcccchhhcc
Q 010623          214 LTIVCDGCFSNLRRSLC  230 (506)
Q Consensus       214 ~vV~AdG~~S~vR~~l~  230 (506)
                      .||.|+|.++.-+-.+|
T Consensus       145 ~VILATGtfL~g~ihig  161 (617)
T TIGR00136       145 AVIITTGTFLRGKIHIG  161 (617)
T ss_pred             EEEEccCcccCCCEEec
Confidence            99999999975444443

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.13  E-value=7.2e-10  Score=110.41  Aligned_cols=171  Identities=23%  Similarity=0.278  Sum_probs=101.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCCccc---------ccccccchHH-HHHHhCch---hHHhh
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDG--RRVHVIERDLSEPDRIV---------GELLQPGGYL-KLIELGLE---DCVEQ  123 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G--~~v~vvE~~~~~~~~~~---------g~~l~~~~~~-~l~~~g~~---~~~~~  123 (506)
                      .++||+|||||+.|+++|+.|++++  ++|+|+||.........         |....++... -+...|-.   +...+
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq   81 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ   81 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence            3699999999999999999999999  99999999875443211         1112233111 11111110   00000


Q ss_pred             cc--cceecceEE-EE-------------------------CCceeeeecCCcC-----CCCCcccccccchHHHHHHHH
Q 010623          124 ID--AQRVFGYAL-FK-------------------------DGNRTQISYPLEK-----FHSDVAGRGFHNGRFVQRLRE  170 (506)
Q Consensus       124 ~~--~~~~~~~~~-~~-------------------------~~~~~~~~~~~~~-----~~~~~~~~~i~~~~l~~~L~~  170 (506)
                      ..  ......+.+ +.                         +.......-|.-.     ....+.+..++...+...|.+
T Consensus        82 ~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~e  161 (429)
T COG0579          82 LGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALAE  161 (429)
T ss_pred             hCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHHH
Confidence            00  001111111 10                         1000000001000     001234457788899999999


Q ss_pred             HHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcc-cchhhccCCC
Q 010623          171 KAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFS-NLRRSLCNPK  233 (506)
Q Consensus       171 ~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S-~vR~~l~~~~  233 (506)
                      .+.++ |+.++++ +|+++++.++++  ..+.+.+|++. ++|+.||.|.|..| ++.+..+++.
T Consensus       162 ~a~~~-g~~i~ln~eV~~i~~~~dg~--~~~~~~~g~~~-~~ak~Vin~AGl~Ad~la~~~g~~~  222 (429)
T COG0579         162 EAQAN-GVELRLNTEVTGIEKQSDGV--FVLNTSNGEET-LEAKFVINAAGLYADPLAQMAGIPE  222 (429)
T ss_pred             HHHHc-CCEEEecCeeeEEEEeCCce--EEEEecCCcEE-EEeeEEEECCchhHHHHHHHhCCCc
Confidence            99998 6777777 599999987753  23445677654 78999999999999 6777777654

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.13  E-value=1.3e-09  Score=115.26  Aligned_cols=64  Identities=25%  Similarity=0.277  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcC-eEEeecCCcccchhhc
Q 010623          164 FVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAP-LTIVCDGCFSNLRRSL  229 (506)
Q Consensus       164 l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~-~vV~AdG~~S~vR~~l  229 (506)
                      +...|.+.+++. ++++..++ ++++..++++|++|.+.. +|+..+++|+ .||.|+|+++.-++++
T Consensus       210 ~~~~L~~~~~~~-gv~v~~~t~v~~l~~~~g~v~Gv~~~~-~g~~~~i~A~~~VIlAtGG~~~n~~m~  275 (557)
T PRK07843        210 LAAGLRIGLQRA-GVPVLLNTPLTDLYVEDGRVTGVHAAE-SGEPQLIRARRGVILASGGFEHNEQMR  275 (557)
T ss_pred             HHHHHHHHHHcC-CCEEEeCCEEEEEEEeCCEEEEEEEEe-CCcEEEEEeceeEEEccCCcCcCHHHH
Confidence            556677777776 78888885 999998888999988764 5666778896 6999999998865543

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.12  E-value=1.4e-09  Score=116.24  Aligned_cols=59  Identities=22%  Similarity=0.324  Sum_probs=48.0

Q ss_pred             HHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeC-CccEEEEEcCeEEeecCCcccc
Q 010623          166 QRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTK-AGEELTAYAPLTIVCDGCFSNL  225 (506)
Q Consensus       166 ~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~-~G~~~~i~a~~vV~AdG~~S~v  225 (506)
                      +.|.+.+.+. ++++++++ ++++..++++|.||.+.+. +|+...+.|+.||.|+|+++.+
T Consensus       174 ~~L~~~~~~~-gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~  234 (640)
T PRK07573        174 QALSRQIAAG-TVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGNV  234 (640)
T ss_pred             HHHHHHHHhc-CCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCcccC
Confidence            5566667665 78888885 9999988889999988764 6776778999999999999875

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.12  E-value=1.3e-09  Score=115.79  Aligned_cols=169  Identities=25%  Similarity=0.264  Sum_probs=94.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC---CcEEEEecCCCCCCccc--ccc----ccc---chHHH-----HHH-hCch--
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDG---RRVHVIERDLSEPDRIV--GEL----LQP---GGYLK-----LIE-LGLE--  118 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G---~~v~vvE~~~~~~~~~~--g~~----l~~---~~~~~-----l~~-~g~~--  118 (506)
                      .++||+|||||+|||+||+.+++.|   .+|+|+||.+.......  +..    +++   ...+.     ++. -++.  
T Consensus         4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~d~   83 (577)
T PRK06069          4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLADQ   83 (577)
T ss_pred             eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhcccCCH
Confidence            4689999999999999999999998   89999999864332211  111    111   11111     100 0110  


Q ss_pred             hHHhh--------cccceecceEEEE--CCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEE
Q 010623          119 DCVEQ--------IDAQRVFGYALFK--DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTS  187 (506)
Q Consensus       119 ~~~~~--------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~  187 (506)
                      +.+..        +......++.+..  ++......+.............-.-..+...|.+.+.+..+++++.++ +++
T Consensus        84 ~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i~~~~~v~~  163 (577)
T PRK06069         84 DAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIHFYDEHFVTS  163 (577)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCEEEECCEEEE
Confidence            00000        0000112222221  111100111000000000000001134777888888765578888875 999


Q ss_pred             EEeeCCeEEEEEEEe-CCccEEEEEcCeEEeecCCcccchh
Q 010623          188 LLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNLRR  227 (506)
Q Consensus       188 ~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~vR~  227 (506)
                      +..+++++.||.+.+ .+|+...++|+.||.|+|+.+.+..
T Consensus       164 Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~~~  204 (577)
T PRK06069        164 LIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRLYG  204 (577)
T ss_pred             EEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhcccCC
Confidence            988888888887654 5776667899999999999987543

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.12  E-value=1.1e-09  Score=112.56  Aligned_cols=158  Identities=20%  Similarity=0.243  Sum_probs=83.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG  138 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (506)
                      ...+|+||||||+||++|..|.+.|++|+|+||++.....-   ...+....  ..+++.....................
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W---~~~~~~~~--d~~~~~~~~~~~~s~~Y~~L~tn~p~   83 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLW---VYTPKSES--DPLSLDPTRSIVHSSVYESLRTNLPR   83 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCccee---ecCCCcCC--CccccCCCCcccchhhhhhhhccCCH
Confidence            45799999999999999999999999999999986532110   01111100  00111100000000000000000000


Q ss_pred             ce-eeeecCCcC-C-CC-CcccccccchHHHHHHHHHHHcCCCEE--EEec-eEEEEEeeCCeEEEEEEEeCCccEEEEE
Q 010623          139 NR-TQISYPLEK-F-HS-DVAGRGFHNGRFVQRLREKAASLPNVR--LEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAY  211 (506)
Q Consensus       139 ~~-~~~~~~~~~-~-~~-~~~~~~i~~~~l~~~L~~~~~~~~~v~--i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~  211 (506)
                      .. ....+|... . .. .......++.++.+.|.+.+.+. ++.  ++++ +|+++...+++.. |+..+.++...+..
T Consensus        84 ~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~f-gl~~~I~~~t~V~~V~~~~~~w~-V~~~~~~~~~~~~~  161 (461)
T PLN02172         84 ECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREF-KIEEMVRFETEVVRVEPVDGKWR-VQSKNSGGFSKDEI  161 (461)
T ss_pred             hhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHc-CCcceEEecCEEEEEeecCCeEE-EEEEcCCCceEEEE
Confidence            00 000122111 0 00 00011235677889999999887 444  6666 5999987766432 44443333333457


Q ss_pred             cCeEEeecCCcc
Q 010623          212 APLTIVCDGCFS  223 (506)
Q Consensus       212 a~~vV~AdG~~S  223 (506)
                      +|.||.|+|..+
T Consensus       162 ~d~VIvAtG~~~  173 (461)
T PLN02172        162 FDAVVVCNGHYT  173 (461)
T ss_pred             cCEEEEeccCCC
Confidence            999999999875

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=99.12  E-value=2.7e-09  Score=99.97  Aligned_cols=175  Identities=22%  Similarity=0.186  Sum_probs=101.9

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHH----------HHHHhCchhHHhhccc
Q 010623           57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYL----------KLIELGLEDCVEQIDA  126 (506)
Q Consensus        57 ~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~----------~l~~~g~~~~~~~~~~  126 (506)
                      +.+..||+|||||+-|+++|+.|+++|.+++++|+-+.+..++.+...+.-...          .++.+..|..+.....
T Consensus         4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g   83 (399)
T KOG2820|consen    4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESG   83 (399)
T ss_pred             cccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhc
Confidence            455799999999999999999999999999999999876655544332211110          1111111211111100


Q ss_pred             ce-ecce-EEEE-CC------------------------ceeeeecCC-cCCC------CCcccccccchHHHHHHHHHH
Q 010623          127 QR-VFGY-ALFK-DG------------------------NRTQISYPL-EKFH------SDVAGRGFHNGRFVQRLREKA  172 (506)
Q Consensus       127 ~~-~~~~-~~~~-~~------------------------~~~~~~~~~-~~~~------~~~~~~~i~~~~l~~~L~~~~  172 (506)
                      .. ..+. .++. +.                        +.....||. ..++      ....+..++-.+-...+.+.+
T Consensus        84 ~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~  163 (399)
T KOG2820|consen   84 VKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKA  163 (399)
T ss_pred             eeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHH
Confidence            00 0000 0111 11                        111222331 1111      123445667777888999999


Q ss_pred             HcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCccc--chhhccCCCC
Q 010623          173 ASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN--LRRSLCNPKV  234 (506)
Q Consensus       173 ~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~--vR~~l~~~~~  234 (506)
                      ++. |+.++.++ |......+.....|.|.+.+|..+  .|+-+|.+.|+|-.  ++..+++..+
T Consensus       164 ~~~-G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y--~akkiI~t~GaWi~klL~~~~~~~~P  225 (399)
T KOG2820|consen  164 REL-GVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIY--HAKKIIFTVGAWINKLLPTSLAIGFP  225 (399)
T ss_pred             HHc-CeEEecCcceeeEeeccCCCceeEEEeccCCee--ecceEEEEecHHHHhhcCcccccCCc
Confidence            998 77788885 666554333333577778899854  59999999999853  4444555443

>PRK07804 L-aspartate oxidase; Provisional

Probab=99.12  E-value=1.8e-09  Score=113.66  Aligned_cols=163  Identities=21%  Similarity=0.282  Sum_probs=91.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc--cccccc-----chH-HHHHHh-----Cch--hHHh
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIV--GELLQP-----GGY-LKLIEL-----GLE--DCVE  122 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~--g~~l~~-----~~~-~~l~~~-----g~~--~~~~  122 (506)
                      +.++||+|||||.|||++|+.+++.|.+|+|+||.+.....+.  +..++.     .+. ..++.+     ++.  +.+.
T Consensus        14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~   93 (541)
T PRK07804         14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVR   93 (541)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence            4579999999999999999999999999999999864322111  111110     001 111110     110  0000


Q ss_pred             hc--------ccceecceEEEE--CCceeeeecCCcCCCCCcccccc------cchHHHHHHHHHHHcCCCEEEEece-E
Q 010623          123 QI--------DAQRVFGYALFK--DGNRTQISYPLEKFHSDVAGRGF------HNGRFVQRLREKAASLPNVRLEQGT-V  185 (506)
Q Consensus       123 ~~--------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i------~~~~l~~~L~~~~~~~~~v~i~~~~-v  185 (506)
                      .+        ......++.+..  +|........     .......+      .-..+...|.+.+++. +++++.++ +
T Consensus        94 ~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~-----g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~-gV~i~~~~~v  167 (541)
T PRK07804         94 SLVAEGPRAVRELVALGARFDESPDGRWALTREG-----GHSRRRIVHAGGDATGAEVQRALDAAVRAD-PLDIREHALA  167 (541)
T ss_pred             HHHHHHHHHHHHHHHcCCccccCCCCcEeeeccC-----CeecCeeEecCCCCCHHHHHHHHHHHHHhC-CCEEEECeEe
Confidence            00        000011222211  1111000000     00000111      1235778899988887 58888775 9


Q ss_pred             EEEEeeC-CeEEEEEEEe-----CCccEEEEEcCeEEeecCCcccchh
Q 010623          186 TSLLEEK-GTIKGVQYKT-----KAGEELTAYAPLTIVCDGCFSNLRR  227 (506)
Q Consensus       186 ~~~~~~~-~~v~~v~v~~-----~~G~~~~i~a~~vV~AdG~~S~vR~  227 (506)
                      +++..++ +++.+|.+.+     .++ ...+.|+.||.|||++|.++.
T Consensus       168 ~~Li~~~~g~v~Gv~~~~~~~~~~~g-~~~i~Ak~VIlATGG~~~~~~  214 (541)
T PRK07804        168 LDLLTDGTGAVAGVTLHVLGEGSPDG-VGAVHAPAVVLATGGLGQLYA  214 (541)
T ss_pred             eeeEEcCCCeEEEEEEEeccCCCCCc-EEEEEcCeEEECCCCCCCCCC
Confidence            9998765 5888888762     333 356889999999999997653

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=99.11  E-value=9.4e-10  Score=115.21  Aligned_cols=66  Identities=24%  Similarity=0.353  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcC-eEEeecCCcccchhhc
Q 010623          163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAP-LTIVCDGCFSNLRRSL  229 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~-~vV~AdG~~S~vR~~l  229 (506)
                      .+...|.+.+.+.++++++.++ ++++..++++|++|.+.. +|++.+++|+ .||.|+|+++...+++
T Consensus       174 ~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~g~v~Gv~~~~-~g~~~~i~A~k~VIlAtGG~~~n~~m~  241 (513)
T PRK12837        174 ALIGRFLAALARFPNARLRLNTPLVELVVEDGRVVGAVVER-GGERRRVRARRGVLLAAGGFEQNDDMR  241 (513)
T ss_pred             HHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCEEEEEEEEE-CCcEEEEEeCceEEEeCCCccCCHHHH
Confidence            3566666666665688888885 999998888999998754 5767788996 7999999988664443

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.11  E-value=1.2e-09  Score=115.94  Aligned_cols=63  Identities=17%  Similarity=0.205  Sum_probs=50.8

Q ss_pred             hHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEE-eCCccEEEEEcCeEEeecCCcccc
Q 010623          162 GRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYK-TKAGEELTAYAPLTIVCDGCFSNL  225 (506)
Q Consensus       162 ~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~-~~~G~~~~i~a~~vV~AdG~~S~v  225 (506)
                      ..+...|.+.+.+. +++++..+ ++++..+++++.|+.+. ..+|+...++|+.||.|+|+++.+
T Consensus       135 ~~i~~~L~~~~~~~-gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~  199 (575)
T PRK05945        135 HAILHELVNNLRRY-GVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRV  199 (575)
T ss_pred             HHHHHHHHHHHhhC-CCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCC
Confidence            35778888888776 78888875 99998888888888754 357776678999999999999875

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=99.11  E-value=1.5e-09  Score=111.53  Aligned_cols=77  Identities=22%  Similarity=0.290  Sum_probs=55.6

Q ss_pred             cccccchHHHHHHHHHHHcCCCEEEEece-EEEEEee-CCeEEEEEEE-eCCccEEEEEcCeEEeecCCcc-cchhhccC
Q 010623          156 GRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEE-KGTIKGVQYK-TKAGEELTAYAPLTIVCDGCFS-NLRRSLCN  231 (506)
Q Consensus       156 ~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~-~~~v~~v~v~-~~~G~~~~i~a~~vV~AdG~~S-~vR~~l~~  231 (506)
                      +..++...+.+.|.+.+.+.++++++.++ |+++..+ ++.+. +++. ..+|+..+++||+||.|.|++| .+.+.+++
T Consensus       178 ~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~-v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~Gi  256 (497)
T PRK13339        178 GTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWE-VTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSGI  256 (497)
T ss_pred             ceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEE-EEEEecCCCceEEEEcCEEEECCCcchHHHHHHcCC
Confidence            34678888999999998765578888875 9999876 55433 4433 3345333578999999999999 57777776


Q ss_pred             CC
Q 010623          232 PK  233 (506)
Q Consensus       232 ~~  233 (506)
                      +.
T Consensus       257 ~~  258 (497)
T PRK13339        257 PE  258 (497)
T ss_pred             Cc
Confidence            53

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.11  E-value=3.4e-09  Score=111.70  Aligned_cols=65  Identities=17%  Similarity=0.217  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEc-CeEEeecCCcccchhhc
Q 010623          163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYA-PLTIVCDGCFSNLRRSL  229 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a-~~vV~AdG~~S~vR~~l  229 (506)
                      .+...|.+.+++. +++++.++ ++++..++++|+||.+.. +|+++.+.+ +.||.|+|+++...+++
T Consensus       218 ~l~~~L~~~~~~~-Gv~i~~~t~v~~Li~~~g~V~GV~~~~-~g~~~~i~a~kaVILAtGGf~~n~em~  284 (564)
T PRK12845        218 ALAAGLFAGVLRA-GIPIWTETSLVRLTDDGGRVTGAVVDH-RGREVTVTARRGVVLAAGGFDHDMEMR  284 (564)
T ss_pred             HHHHHHHHHHHHC-CCEEEecCEeeEEEecCCEEEEEEEEE-CCcEEEEEcCCEEEEecCCccccHHHH
Confidence            3556777778776 78888875 999988778899998765 455566777 68999999999875443

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.11  E-value=1.5e-09  Score=114.63  Aligned_cols=62  Identities=18%  Similarity=0.300  Sum_probs=50.4

Q ss_pred             hHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCe-EEEEEEEe-CCccEEEEEcCeEEeecCCccc
Q 010623          162 GRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGT-IKGVQYKT-KAGEELTAYAPLTIVCDGCFSN  224 (506)
Q Consensus       162 ~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~-v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~  224 (506)
                      ..+...|.+.+.+. +++++.++ ++++..++++ +.||.+.+ .+|+...++|+.||.|+|+++.
T Consensus       134 ~~i~~~L~~~~~~~-gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~  198 (543)
T PRK06263        134 HEMMMGLMEYLIKE-RIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQ  198 (543)
T ss_pred             HHHHHHHHHHHhcC-CCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence            35777888888775 78888885 9999877665 88888766 6787778999999999999985

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.10  E-value=2.5e-09  Score=113.73  Aligned_cols=62  Identities=15%  Similarity=0.215  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHcCCCEEEEece-EEEEEeeC-CeEEEEEEEe-CCccEEEEEcCeEEeecCCcccc
Q 010623          163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEK-GTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL  225 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~-~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~v  225 (506)
                      .+...|.+.+.+. +++++.++ ++++..++ ++|.||.+.+ .+|+.+.+.|+.||.|+|+++..
T Consensus       150 ~i~~~L~~~~~~~-gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~  214 (598)
T PRK09078        150 AILHTLYQQSLKH-NAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRA  214 (598)
T ss_pred             HHHHHHHHHHhhc-CCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCccc
Confidence            5778888888776 78888775 99998765 6899998754 57877789999999999999863

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=99.10  E-value=2.3e-09  Score=114.32  Aligned_cols=166  Identities=17%  Similarity=0.194  Sum_probs=94.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc--cccccc-------chHHH-HHH-----hCch-hH-H
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIV--GELLQP-------GGYLK-LIE-----LGLE-DC-V  121 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~--g~~l~~-------~~~~~-l~~-----~g~~-~~-~  121 (506)
                      .++||||||||.|||++|+.+++.|.+|+|+||.+.......  ...+..       ...+. +..     -++. +. +
T Consensus        28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~lv  107 (617)
T PTZ00139         28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDAI  107 (617)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence            468999999999999999999999999999999864332111  111111       11111 111     0110 00 0


Q ss_pred             hh--------cccceecceEEEEC--CceeeeecCCcCC--C-CCcccccc---c--chHHHHHHHHHHHcCCCEEEEec
Q 010623          122 EQ--------IDAQRVFGYALFKD--GNRTQISYPLEKF--H-SDVAGRGF---H--NGRFVQRLREKAASLPNVRLEQG  183 (506)
Q Consensus       122 ~~--------~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~-~~~~~~~i---~--~~~l~~~L~~~~~~~~~v~i~~~  183 (506)
                      ..        +......++.+...  +......+.....  . .....+.+   +  -..+...|.+.+.+. +++++.+
T Consensus       108 ~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~-gv~i~~~  186 (617)
T PTZ00139        108 QYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKY-DCNFFIE  186 (617)
T ss_pred             HHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhC-CCEEEec
Confidence            00        00001123333221  1110000000000  0 00000111   1  136788899888886 7888887


Q ss_pred             e-EEEEEe-eCCeEEEEEEEe-CCccEEEEEcCeEEeecCCcccc
Q 010623          184 T-VTSLLE-EKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL  225 (506)
Q Consensus       184 ~-v~~~~~-~~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~v  225 (506)
                      + ++++.. +++++.||.+.+ .+|+.+.++|+.||.|+|+++..
T Consensus       187 ~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~  231 (617)
T PTZ00139        187 YFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRA  231 (617)
T ss_pred             eEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCccc
Confidence            5 999887 678899988744 67887789999999999998753

>PRK09077 L-aspartate oxidase; Provisional

Probab=99.08  E-value=3.1e-09  Score=111.83  Aligned_cols=65  Identities=17%  Similarity=0.197  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHcCCCEEEEece-EEEEEeeC------CeEEEEEEEe-CCccEEEEEcCeEEeecCCcccchh
Q 010623          163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEK------GTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNLRR  227 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~------~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~vR~  227 (506)
                      .+...|.+.+.+.++++++.++ ++++..++      +++.||.+.+ .+|+...+.|+.||.|+|+++.+..
T Consensus       139 ~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~~  211 (536)
T PRK09077        139 AVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKVYL  211 (536)
T ss_pred             HHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCCCCC
Confidence            5778888888877789988885 88888653      7899998865 4677778999999999999997654

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.08  E-value=2.8e-09  Score=113.23  Aligned_cols=63  Identities=16%  Similarity=0.131  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHcCC---CEEEEece-EEEEEee-CCeEEEEEEEeC-CccEEEEEcCeEEeecCCcccc
Q 010623          163 RFVQRLREKAASLP---NVRLEQGT-VTSLLEE-KGTIKGVQYKTK-AGEELTAYAPLTIVCDGCFSNL  225 (506)
Q Consensus       163 ~l~~~L~~~~~~~~---~v~i~~~~-v~~~~~~-~~~v~~v~v~~~-~G~~~~i~a~~vV~AdG~~S~v  225 (506)
                      .+...|.+.+.+.+   ++.+..++ ++++..+ +++|.||.+.+. +|+.+.+.|+.||.|+|+++.+
T Consensus       134 ~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~  202 (589)
T PRK08641        134 QLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPGII  202 (589)
T ss_pred             HHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCcCC
Confidence            47777877776542   37777664 8888874 678999988764 5666678999999999999864

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.07  E-value=5.6e-09  Score=110.29  Aligned_cols=65  Identities=25%  Similarity=0.311  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEc-CeEEeecCCcccchhhc
Q 010623          163 RFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYA-PLTIVCDGCFSNLRRSL  229 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a-~~vV~AdG~~S~vR~~l  229 (506)
                      .+...|.+.+++. +++++.+ +++++..++++|++|.+.. +|+.+++.| +.||.|+|+++.-.+++
T Consensus       209 ~l~~~l~~~~~~~-gv~i~~~~~v~~Li~~~g~v~Gv~~~~-~g~~~~i~A~~aVIlAtGG~~~N~em~  275 (557)
T PRK12844        209 ALIGRMLEAALAA-GVPLWTNTPLTELIVEDGRVVGVVVVR-DGREVLIRARRGVLLASGGFGHNAEMR  275 (557)
T ss_pred             HHHHHHHHHHHhC-CCEEEeCCEEEEEEEeCCEEEEEEEEE-CCeEEEEEecceEEEecCCccCCHHHH
Confidence            4666777888877 7888887 4999998889999998864 566677889 47999999999865544

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=99.07  E-value=2.2e-08  Score=101.61  Aligned_cols=63  Identities=25%  Similarity=0.271  Sum_probs=47.1

Q ss_pred             ccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccc
Q 010623          157 RGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNL  225 (506)
Q Consensus       157 ~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~v  225 (506)
                      ..++...+...|.+.+.+.|...+...+ +..+..+. +  .+.+.+.+|+   ++|+.||.|+|.++..
T Consensus       151 ~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~-~--~~~v~t~~g~---i~a~~vv~a~G~~~~~  214 (387)
T COG0665         151 GHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDG-R--VVGVETDGGT---IEADKVVLAAGAWAGE  214 (387)
T ss_pred             CcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecC-c--EEEEEeCCcc---EEeCEEEEcCchHHHH
Confidence            4566778899999999998656666554 77777652 2  3455577775   6799999999999864

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=99.07  E-value=2.5e-09  Score=113.97  Aligned_cols=63  Identities=19%  Similarity=0.209  Sum_probs=51.1

Q ss_pred             hHHHHHHHHHHHcCCCEEEEece-EEEEEee-CCeEEEEEEEe-CCccEEEEEcCeEEeecCCcccc
Q 010623          162 GRFVQRLREKAASLPNVRLEQGT-VTSLLEE-KGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL  225 (506)
Q Consensus       162 ~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~-~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~v  225 (506)
                      ..+...|.+.+.+. +++++.++ ++++..+ ++++.||.+.+ .+|+...+.|+.||.|+|+++..
T Consensus       187 ~~i~~~L~~~a~~~-gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~  252 (635)
T PLN00128        187 HAMLHTLYGQAMKH-NTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGRA  252 (635)
T ss_pred             HHHHHHHHHHHHhC-CCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCccc
Confidence            35778888888876 78888775 9998876 67899988755 57887789999999999999864

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.06  E-value=2.6e-09  Score=113.37  Aligned_cols=62  Identities=15%  Similarity=0.210  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHcCCCEEEEece-EEEEEee-CCeEEEEEEEe-CCccEEEEEcCeEEeecCCcccc
Q 010623          163 RFVQRLREKAASLPNVRLEQGT-VTSLLEE-KGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL  225 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~-~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~v  225 (506)
                      .+...|.+.+.+. ++.++.++ ++++..+ ++++.||.+.+ .+|+...+.|+.||.|+|+++.+
T Consensus       144 ~i~~~L~~~~~~~-gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~  208 (588)
T PRK08958        144 ALLHTLYQQNLKN-HTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGRI  208 (588)
T ss_pred             HHHHHHHHHhhhc-CCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence            5778888887765 78887775 9999875 67899998754 57877789999999999999864

>PRK08275 putative oxidoreductase; Provisional

Probab=99.06  E-value=3.5e-09  Score=111.96  Aligned_cols=62  Identities=24%  Similarity=0.316  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHcCCCEEEEece-EEEEEee-CCeEEEEEEEe-CCccEEEEEcCeEEeecCCcccc
Q 010623          163 RFVQRLREKAASLPNVRLEQGT-VTSLLEE-KGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL  225 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~-~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~v  225 (506)
                      .+.+.|.+.+.+. ++++.+.+ ++++..+ ++++.||.+.+ .+|+...++|+.||.|+|+.+.+
T Consensus       138 ~i~~~L~~~~~~~-gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~  202 (554)
T PRK08275        138 DIKKVLYRQLKRA-RVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRL  202 (554)
T ss_pred             HHHHHHHHHHHHC-CCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcccc
Confidence            5778888888776 78888875 9999876 67788887654 57776678999999999998864

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.05  E-value=4.6e-09  Score=112.28  Aligned_cols=167  Identities=21%  Similarity=0.243  Sum_probs=91.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc---ccc---cccc----chHH-HH----HH-hCchh--H
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI---VGE---LLQP----GGYL-KL----IE-LGLED--C  120 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~---~g~---~l~~----~~~~-~l----~~-~g~~~--~  120 (506)
                      .++||+|||||.|||+||+.+++.|.+|+|+||.+.....+   .|.   .+..    ...+ .+    +. -++.+  .
T Consensus         7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~g~~l~d~~~   86 (626)
T PRK07803          7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGGKFLNNWRM   86 (626)
T ss_pred             eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCcceecCccceeeccCCCCCCCHHHHHHHHHHHhccCCcHHH
Confidence            46899999999999999999999999999999986432111   111   0110    0111 11    00 01111  0


Q ss_pred             Hhhc--------ccceecceEEEE--CCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcC--------C----CE
Q 010623          121 VEQI--------DAQRVFGYALFK--DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASL--------P----NV  178 (506)
Q Consensus       121 ~~~~--------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~--------~----~v  178 (506)
                      +..+        ......++.+..  ++......+....+........-.-..+...|.+.+.+.        +    ++
T Consensus        87 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~~~~~~~~~G~~~~~v  166 (626)
T PRK07803         87 AELHAKEAPDRVWELETYGALFDRTKDGRISQRNFGGHTYPRLAHVGDRTGLELIRTLQQKIVSLQQEDHAELGDYEARI  166 (626)
T ss_pred             HHHHHHHhHHHHHHHHHCCCceEecCCCceeeeecCCcccCeEEecCCCcHHHHHHHHHHHHHhhhccccccccCCcCce
Confidence            0000        000112222221  111100011000000000000001135677788777665        2    38


Q ss_pred             EEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEeecCCcccc
Q 010623          179 RLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL  225 (506)
Q Consensus       179 ~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~v  225 (506)
                      .++.++ ++++..+++++.|+.+.+ .+|+...+.|+.||.|+|+.+..
T Consensus       167 ~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~  215 (626)
T PRK07803        167 KVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGGIGKS  215 (626)
T ss_pred             EEEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCcccCC
Confidence            888885 999988888888887654 57776778999999999997754

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.05  E-value=5.5e-09  Score=110.79  Aligned_cols=64  Identities=25%  Similarity=0.287  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHcCCCEEEEece-EEEEEee-CCeEEEEEEEeCCccEEEEEcC-eEEeecCCcccchhhc
Q 010623          164 FVQRLREKAASLPNVRLEQGT-VTSLLEE-KGTIKGVQYKTKAGEELTAYAP-LTIVCDGCFSNLRRSL  229 (506)
Q Consensus       164 l~~~L~~~~~~~~~v~i~~~~-v~~~~~~-~~~v~~v~v~~~~G~~~~i~a~-~vV~AdG~~S~vR~~l  229 (506)
                      +...|.+.+++. +++++.++ ++++..+ +++|+||.+.. +|+.++++|+ .||.|+|+++.-.+++
T Consensus       215 ~~~~l~~~~~~~-gv~i~~~~~~~~Li~d~~g~V~Gv~~~~-~~~~~~i~a~~aVilAtGGf~~N~em~  281 (584)
T PRK12835        215 LVARLRLALKDA-GVPLWLDSPMTELITDPDGAVVGAVVER-EGRTLRIGARRGVILATGGFDHDMDWR  281 (584)
T ss_pred             HHHHHHHHHHhC-CceEEeCCEEEEEEECCCCcEEEEEEEe-CCcEEEEEeceeEEEecCcccCCHHHH
Confidence            444566666665 88888885 9999986 57899998854 6666778997 6999999999755444

>PRK08071 L-aspartate oxidase; Provisional

Probab=99.04  E-value=3.9e-09  Score=110.35  Aligned_cols=61  Identities=23%  Similarity=0.340  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccc
Q 010623          163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNL  225 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~v  225 (506)
                      .+.+.|.+.+. . +++++.++ ++++..+++++.+|.+.+.+|+...++|+.||.|+|+++.+
T Consensus       131 ~i~~~L~~~~~-~-gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~~  192 (510)
T PRK08071        131 NLLEHLLQELV-P-HVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCGGL  192 (510)
T ss_pred             HHHHHHHHHHh-c-CCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCccc
Confidence            47778887775 3 78888875 99998778888888887777777778999999999999863

>PLN02815 L-aspartate oxidase

Probab=99.04  E-value=4.6e-09  Score=111.03  Aligned_cols=165  Identities=17%  Similarity=0.241  Sum_probs=92.3

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc--cccccc-----chH-HHHHHh---C--ch-hHH-
Q 010623           57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIV--GELLQP-----GGY-LKLIEL---G--LE-DCV-  121 (506)
Q Consensus        57 ~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~--g~~l~~-----~~~-~~l~~~---g--~~-~~~-  121 (506)
                      .+.++||||||+|.|||++|+.+++.| +|+|+||.+.....+.  +..++.     ... ..++.+   |  +. +.+ 
T Consensus        26 ~~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~lv  104 (594)
T PLN02815         26 STKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEETV  104 (594)
T ss_pred             cccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHHHH
Confidence            345689999999999999999999999 9999999864332111  111110     011 111111   1  10 110 


Q ss_pred             hhc--------ccceecceEEEECCceeeeecCCcCCCCCcccccc-----cchHHHHHHHHHHHcCCCEEEEece-EEE
Q 010623          122 EQI--------DAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGF-----HNGRFVQRLREKAASLPNVRLEQGT-VTS  187 (506)
Q Consensus       122 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~~l~~~L~~~~~~~~~v~i~~~~-v~~  187 (506)
                      ..+        ......++.+...... .....  ..........+     .-..+...|.+.+.+.++++++.++ +++
T Consensus       105 ~~~~~~s~e~i~~L~~~Gv~F~~~~~g-~~~~~--~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~  181 (594)
T PLN02815        105 RVVCTEGPERVKELIAMGASFDHGEDG-NLHLA--REGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAID  181 (594)
T ss_pred             HHHHHHHHHHHHHHHHhCCeeeecCCC-Ccccc--CCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhhe
Confidence            000        0001122222211100 00000  00000000111     1235778888888776688888875 899


Q ss_pred             EEeeC-C---eEEEEEEEe-CCccEEEEEcCeEEeecCCcccc
Q 010623          188 LLEEK-G---TIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL  225 (506)
Q Consensus       188 ~~~~~-~---~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~v  225 (506)
                      +..++ +   ++.|+.+.+ .+|+...+.|+.||.|+|+++.+
T Consensus       182 Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~  224 (594)
T PLN02815        182 LLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGHI  224 (594)
T ss_pred             eeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcceee
Confidence            88753 3   278888754 57877788999999999999864

>PRK12839 hypothetical protein; Provisional

Probab=99.04  E-value=6.6e-09  Score=109.83  Aligned_cols=64  Identities=27%  Similarity=0.349  Sum_probs=49.2

Q ss_pred             chHHHHHHHHHHHcCCCEEEEece-EEEEEee-CCeEEEEEEEeCCccEEEEEcCeEEeecCCcccc
Q 010623          161 NGRFVQRLREKAASLPNVRLEQGT-VTSLLEE-KGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNL  225 (506)
Q Consensus       161 ~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~-~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~v  225 (506)
                      ...+...|.+.+.+. +++++.++ ++++..+ +++|++|.+...+|+...+.++.||.|+|+++.-
T Consensus       213 g~~l~~~L~~~a~~~-Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n  278 (572)
T PRK12839        213 GTALTGRLLRSADDL-GVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPND  278 (572)
T ss_pred             HHHHHHHHHHHHHHC-CCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccC
Confidence            345677788888887 78888775 9999764 6789999987777764434458999999999973

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=99.04  E-value=2.2e-09  Score=122.26  Aligned_cols=166  Identities=24%  Similarity=0.276  Sum_probs=93.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc--cccccccchHHHHHHhCchhHHhhc-----------
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI--VGELLQPGGYLKLIELGLEDCVEQI-----------  124 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~--~g~~l~~~~~~~l~~~g~~~~~~~~-----------  124 (506)
                      +.++||||||||.||++||+.+++.|.+|+|+||.+......  .+..++..+.+..++.|+.+....+           
T Consensus       407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~~s~ggi~~~~t~~q~~~gi~D~~~~~~~d~~~~~~~~  486 (1167)
T PTZ00306        407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVLDGGKFFERDTHLSGKGG  486 (1167)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchhhcccccccCCchhhhhhcccccHHHHHHHHHHhccCC
Confidence            457999999999999999999999999999999986543322  1122222222222222322111000           


Q ss_pred             ----------cc--------ceecceEEEE----CCceeeeecCCcCCCCCccccccc-chHHHHHHHHHHHcC--CCEE
Q 010623          125 ----------DA--------QRVFGYALFK----DGNRTQISYPLEKFHSDVAGRGFH-NGRFVQRLREKAASL--PNVR  179 (506)
Q Consensus       125 ----------~~--------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~-~~~l~~~L~~~~~~~--~~v~  179 (506)
                                ..        ....++.+..    .+.......   .......+.... -..+...|.+.+++.  .+++
T Consensus       487 ~~d~~lv~~~~~~s~e~idwL~~~Gv~f~~~~~~gg~~~~r~~---~~~~~~~g~~~~~G~~i~~~l~~~~~~~~~~gv~  563 (1167)
T PTZ00306        487 HCDPGLVKTLSVKSADAISWLSSLGVPLTVLSQLGGASRKRCH---RAPDKKDGTPVPIGFTIMRTLEDHIRTKLSGRVT  563 (1167)
T ss_pred             CCCHHHHHHHHHhhHHHHHHHHHcCCCceeeeccCCCCCCcee---ecCcccCCCcCCcHHHHHHHHHHHHHhhccCCcE
Confidence                      00        0001111100    000000000   000000000001 123555666666542  4788


Q ss_pred             EEece-EEEEEeeC---------CeEEEEEEEeC---CccEEEEEcCeEEeecCCcccch
Q 010623          180 LEQGT-VTSLLEEK---------GTIKGVQYKTK---AGEELTAYAPLTIVCDGCFSNLR  226 (506)
Q Consensus       180 i~~~~-v~~~~~~~---------~~v~~v~v~~~---~G~~~~i~a~~vV~AdG~~S~vR  226 (506)
                      +++++ ++++..++         ++|+||.+.+.   +|+.+.++|+.||.|+|+++...
T Consensus       564 i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~~N~  623 (1167)
T PTZ00306        564 IMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSNDH  623 (1167)
T ss_pred             EEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCcccCc
Confidence            88885 99999763         27999998876   88878899999999999999754

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.03  E-value=6.4e-09  Score=110.52  Aligned_cols=62  Identities=15%  Similarity=0.237  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHcCCCEEEEece-EEEEEee-CCeEEEEEEEe-CCccEEEEEcCeEEeecCCcccc
Q 010623          163 RFVQRLREKAASLPNVRLEQGT-VTSLLEE-KGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL  225 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~-~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~v  225 (506)
                      .+...|.+.+.+. +++++.++ ++++..+ ++++.||.+.+ .+|+...+.|+.||.|+|+.+.+
T Consensus       149 ~l~~~L~~~~~~~-gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~  213 (591)
T PRK07057        149 ALLHTLYQQNVAA-KTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRI  213 (591)
T ss_pred             HHHHHHHHHHHhc-CCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcccc
Confidence            5778888888776 77887775 8998865 57888998754 56776778999999999999865

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=99.03  E-value=8e-09  Score=109.78  Aligned_cols=64  Identities=27%  Similarity=0.334  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcC-eEEeecCCcccchhh
Q 010623          163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAP-LTIVCDGCFSNLRRS  228 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~-~vV~AdG~~S~vR~~  228 (506)
                      .+...|.+.+.+. +++++.++ |+++..+++++++|.+.+.+++ .++.++ .||.|+|.++.-.++
T Consensus       215 ~l~~~L~~~~~~~-Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~-~~i~a~k~VVlAtGg~~~n~~~  280 (574)
T PRK12842        215 ALAARLAKSALDL-GIPILTGTPARELLTEGGRVVGARVIDAGGE-RRITARRGVVLACGGFSHDLAR  280 (574)
T ss_pred             HHHHHHHHHHHhC-CCEEEeCCEEEEEEeeCCEEEEEEEEcCCce-EEEEeCCEEEEcCCCccchHHH
Confidence            3566677778776 78888775 9999988888999988765554 457785 899999999954433

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.02  E-value=3.3e-09  Score=109.47  Aligned_cols=69  Identities=12%  Similarity=0.188  Sum_probs=51.7

Q ss_pred             cccchHHHHHHHHHHHc----CCC-EEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcc-cchhhcc
Q 010623          158 GFHNGRFVQRLREKAAS----LPN-VRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFS-NLRRSLC  230 (506)
Q Consensus       158 ~i~~~~l~~~L~~~~~~----~~~-v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S-~vR~~l~  230 (506)
                      .++...+...|.+.+++    .|+ +.++.++ |+++..+++++  +.+.+.+|   +++||.||.|.|++| .+.+.++
T Consensus       207 ~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~--~~V~T~~G---~i~A~~VVvaAG~~S~~La~~~G  281 (497)
T PTZ00383        207 TVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSL--YKIHTNRG---EIRARFVVVSACGYSLLFAQKMG  281 (497)
T ss_pred             EECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCe--EEEEECCC---EEEeCEEEECcChhHHHHHHHhC
Confidence            56777899999999988    643 7777774 99998875543  34456666   377999999999999 4666666


Q ss_pred             C
Q 010623          231 N  231 (506)
Q Consensus       231 ~  231 (506)
                      +
T Consensus       282 i  282 (497)
T PTZ00383        282 Y  282 (497)
T ss_pred             C
Confidence            5

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=99.02  E-value=1.7e-09  Score=114.94  Aligned_cols=63  Identities=27%  Similarity=0.362  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEc-CeEEeecCCcccchh
Q 010623          163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYA-PLTIVCDGCFSNLRR  227 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a-~~vV~AdG~~S~vR~  227 (506)
                      .+...|.+.+++. +++++.++ |+++..+++++++|.+...++ ..+++| +.||.|+|+++.-.+
T Consensus       218 ~l~~~L~~~a~~~-Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~-~~~i~a~k~VVlAtGg~~~n~~  282 (581)
T PRK06134        218 ALVARLLKSAEDL-GVRIWESAPARELLREDGRVAGAVVETPGG-LQEIRARKGVVLAAGGFPHDPA  282 (581)
T ss_pred             HHHHHHHHHHHhC-CCEEEcCCEEEEEEEeCCEEEEEEEEECCc-EEEEEeCCEEEEcCCCcccCHH
Confidence            4667888888887 78888774 999988788898888866544 456889 999999999996433

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=99.01  E-value=2.6e-08  Score=93.37  Aligned_cols=75  Identities=24%  Similarity=0.292  Sum_probs=59.1

Q ss_pred             cccchHHHHHHHHHHHcCCCEEEEeceEEEEEee----------CC-------eEEEEEEEeCCccEEEEEcCeEEeecC
Q 010623          158 GFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEE----------KG-------TIKGVQYKTKAGEELTAYAPLTIVCDG  220 (506)
Q Consensus       158 ~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~----------~~-------~v~~v~v~~~~G~~~~i~a~~vV~AdG  220 (506)
                      .++...|...+++.+... |+.+..++|++++.+          ++       ++.+|.++-.|+...+++++++|.|.|
T Consensus       239 wfdpw~LLs~~rrk~~~l-Gv~f~~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAG  317 (509)
T KOG2853|consen  239 WFDPWALLSGIRRKAITL-GVQFVKGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAG  317 (509)
T ss_pred             ccCHHHHHHHHHHHhhhh-cceEecceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccC
Confidence            456778889999999988 788888888887744          23       455677777777777899999999999


Q ss_pred             Ccc-cchhhccCCC
Q 010623          221 CFS-NLRRSLCNPK  233 (506)
Q Consensus       221 ~~S-~vR~~l~~~~  233 (506)
                      ++| .+.+..++..
T Consensus       318 a~s~QvArlAgIG~  331 (509)
T KOG2853|consen  318 AWSGQVARLAGIGK  331 (509)
T ss_pred             ccHHHHHHHhccCC
Confidence            999 6777777753

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=99.01  E-value=1.7e-09  Score=115.79  Aligned_cols=62  Identities=16%  Similarity=0.272  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEeecCCcccc
Q 010623          163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL  225 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~v  225 (506)
                      .+...|.+.+.+. ++.++.++ ++++..+++++.|+.+.+ .+|+...+.|+.||.|+|+++.+
T Consensus       159 ~l~~~L~~~~~~~-gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~  222 (657)
T PRK08626        159 TMLYAVDNEAIKL-GVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGRI  222 (657)
T ss_pred             HHHHHHHHHHHhC-CCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccCC
Confidence            4566788878776 78888775 999998888999998876 68887788999999999999865

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=99.00  E-value=1.6e-08  Score=107.39  Aligned_cols=65  Identities=22%  Similarity=0.234  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEc-CeEEeecCCcccchhhc
Q 010623          163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYA-PLTIVCDGCFSNLRRSL  229 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a-~~vV~AdG~~S~vR~~l  229 (506)
                      .+...|.+.+++. +++++.++ ++++..++++|.+|.+.. +|+..++.| +.||.|+|+++...+++
T Consensus       222 ~l~~aL~~~~~~~-Gv~i~~~t~v~~Li~~~g~V~GV~~~~-~g~~~~i~A~~~VVlAtGg~~~n~em~  288 (578)
T PRK12843        222 ALIGRLLYSLRAR-GVRILTQTDVESLETDHGRVIGATVVQ-GGVRRRIRARGGVVLATGGFNRHPQLR  288 (578)
T ss_pred             HHHHHHHHHHHhC-CCEEEeCCEEEEEEeeCCEEEEEEEec-CCeEEEEEccceEEECCCCcccCHHHH
Confidence            4677788888877 68888774 999987788899988754 566667886 78999999999865554

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.00  E-value=2.7e-09  Score=110.52  Aligned_cols=60  Identities=23%  Similarity=0.305  Sum_probs=45.3

Q ss_pred             ccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCccc
Q 010623          157 RGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN  224 (506)
Q Consensus       157 ~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~  224 (506)
                      ..++...+...|.+.+.+. |++++.++ |++++. ++.   +.+.+++|+   ++||.||.|+|++|.
T Consensus       178 g~i~P~~l~~~L~~~a~~~-Gv~i~~~t~V~~i~~-~~~---~~v~t~~g~---v~A~~VV~Atga~s~  238 (460)
T TIGR03329       178 ASVQPGLLVRGLRRVALEL-GVEIHENTPMTGLEE-GQP---AVVRTPDGQ---VTADKVVLALNAWMA  238 (460)
T ss_pred             eEECHHHHHHHHHHHHHHc-CCEEECCCeEEEEee-CCc---eEEEeCCcE---EECCEEEEccccccc
Confidence            4567778999999999888 67787775 988875 332   345566663   679999999999974

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.00  E-value=1.4e-09  Score=99.79  Aligned_cols=136  Identities=23%  Similarity=0.269  Sum_probs=72.0

Q ss_pred             EEECCCHHHHHHHHHHHHCCCc-EEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCceee
Q 010623           64 IVVGAGVAGAALANTLAKDGRR-VHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQ  142 (506)
Q Consensus        64 vIVGgG~aGl~~A~~La~~G~~-v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (506)
                      +||||||+||++|..|.++|++ ++|+||++.+...-.    .......+..-....  ..      .+..   +-    
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~----~~~~~~~~~~~~~~~--~~------~~~~---~~----   61 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWR----RYYSYTRLHSPSFFS--SD------FGLP---DF----   61 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHH----CH-TTTT-BSSSCCT--GG------SS-----CC----
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeE----EeCCCCccccCcccc--cc------ccCC---cc----
Confidence            6999999999999999999999 999999865322111    000000000000000  00      0000   00    


Q ss_pred             eecCCcCCCC-CcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecC
Q 010623          143 ISYPLEKFHS-DVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDG  220 (506)
Q Consensus       143 ~~~~~~~~~~-~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG  220 (506)
                      ..+....... ..........++.+.|.+.+++. +..+++++ |+++..++++   ++++..+++  +++||.||.|+|
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~i~~~~~V~~v~~~~~~---w~v~~~~~~--~~~a~~VVlAtG  135 (203)
T PF13738_consen   62 ESFSFDDSPEWRWPHDFPSGEEVLDYLQEYAERF-GLEIRFNTRVESVRRDGDG---WTVTTRDGR--TIRADRVVLATG  135 (203)
T ss_dssp             CHSCHHHHHHHHHSBSSEBHHHHHHHHHHHHHHT-TGGEETS--EEEEEEETTT---EEEEETTS---EEEEEEEEE---
T ss_pred             cccccccCCCCCCCcccCCHHHHHHHHHHHHhhc-CcccccCCEEEEEEEeccE---EEEEEEecc--eeeeeeEEEeee
Confidence            0000000000 00112356677888888888887 56677764 9999999885   556677774  467999999999


Q ss_pred             Cccc
Q 010623          221 CFSN  224 (506)
Q Consensus       221 ~~S~  224 (506)
                      ..|.
T Consensus       136 ~~~~  139 (203)
T PF13738_consen  136 HYSH  139 (203)
T ss_dssp             SSCS
T ss_pred             ccCC
Confidence            8764

...

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.98  E-value=6.9e-09  Score=109.23  Aligned_cols=61  Identities=23%  Similarity=0.250  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHcCCCEEEEece-EEEEEeeC--CeEEEEEEEeCCccEEEEEcCeEEeecCCccc
Q 010623          163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEK--GTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN  224 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~--~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~  224 (506)
                      .+...|.+.+.+.++++++.++ ++++..++  +++.||.+.. +|....+.|+.||.|+|+++.
T Consensus       135 ~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~-~g~~~~i~AkaVILATGG~~~  198 (553)
T PRK07395        135 AIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLY-QGQITWLRAGAVILATGGGGQ  198 (553)
T ss_pred             HHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEE-CCeEEEEEcCEEEEcCCCCcc
Confidence            5778888888766689998885 99998763  7888887754 676667899999999999865

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.98  E-value=8.6e-09  Score=106.74  Aligned_cols=60  Identities=27%  Similarity=0.354  Sum_probs=46.7

Q ss_pred             hHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccchh
Q 010623          162 GRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRR  227 (506)
Q Consensus       162 ~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~  227 (506)
                      ..+.+.|.+.+++. ++++..++++++..+++++.++.+   +|+  .++++.||.|+|++|....
T Consensus       120 ~~i~~~L~~~~~~~-gv~i~~~~v~~l~~~~g~v~Gv~~---~g~--~i~a~~VVLATGG~~~~~~  179 (466)
T PRK08401        120 KHIIKILYKHAREL-GVNFIRGFAEELAIKNGKAYGVFL---DGE--LLKFDATVIATGGFSGLFK  179 (466)
T ss_pred             HHHHHHHHHHHHhc-CCEEEEeEeEEEEeeCCEEEEEEE---CCE--EEEeCeEEECCCcCcCCCC
Confidence            35788898888876 677777778888877777777764   343  4779999999999998654

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.97  E-value=1e-08  Score=109.01  Aligned_cols=63  Identities=19%  Similarity=0.139  Sum_probs=50.1

Q ss_pred             hHHHHHHHHHHHcCCCEEEEece-EEEEEeeC----CeEEEEEEEe-CCccEEEEEcCeEEeecCCcccc
Q 010623          162 GRFVQRLREKAASLPNVRLEQGT-VTSLLEEK----GTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL  225 (506)
Q Consensus       162 ~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~----~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~v  225 (506)
                      ..+...|.+.+.+. ++++..++ ++++..++    +++.||.+.+ .+|+...++|+.||.|+|+.+.+
T Consensus       140 ~~i~~~L~~~~~~~-gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~  208 (583)
T PRK08205        140 HMILQTLYQNCVKH-GVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRV  208 (583)
T ss_pred             HHHHHHHHHHHHhc-CCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCccc
Confidence            35778888888876 78888775 99988665    7888888743 56776678999999999999865

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.96  E-value=1.3e-08  Score=108.19  Aligned_cols=63  Identities=17%  Similarity=0.216  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHc---CCCEEEEece-EEEEEee-CCeEEEEEEEeC-CccEEEEEcCeEEeecCCcccc
Q 010623          163 RFVQRLREKAAS---LPNVRLEQGT-VTSLLEE-KGTIKGVQYKTK-AGEELTAYAPLTIVCDGCFSNL  225 (506)
Q Consensus       163 ~l~~~L~~~~~~---~~~v~i~~~~-v~~~~~~-~~~v~~v~v~~~-~G~~~~i~a~~vV~AdG~~S~v  225 (506)
                      .+...|.+.+.+   .++++++.++ ++++..+ ++++.||.+.+. +|+...+.|+.||.|+|+++.+
T Consensus       130 ~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~  198 (603)
T TIGR01811       130 QLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGYGNV  198 (603)
T ss_pred             HHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcCc
Confidence            344555544432   3578888885 9999875 458999988763 6776778999999999998764

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.95  E-value=1.1e-08  Score=107.19  Aligned_cols=62  Identities=21%  Similarity=0.369  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccc
Q 010623          163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNL  225 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~v  225 (506)
                      .+...|.+.+.+.++++++.++ ++++..+++++.+|.+.+. ++..+++|+.||.|+|+.+..
T Consensus       137 ~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~-~~~~~i~Ak~VVLATGG~~~~  199 (513)
T PRK07512        137 AIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATA-GGPVVLPARAVVLATGGIGGL  199 (513)
T ss_pred             HHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeC-CeEEEEECCEEEEcCCCCcCC
Confidence            5788888888776688998885 9998877788888887654 334568899999999998753

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.94  E-value=1.3e-08  Score=99.43  Aligned_cols=113  Identities=25%  Similarity=0.337  Sum_probs=75.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      +||+|||||++|+++|..|++.|++|+|+|+.+.     .| .+...           ..+                   
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~-----gg-~~~~~-----------~~~-------------------   44 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP-----GG-QLTTT-----------TEV-------------------   44 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC-----Cc-ceeec-----------ccc-------------------
Confidence            6999999999999999999999999999998751     11 01000           000                   


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecC
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDG  220 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG  220 (506)
                        ..++  .+.     ..+....+...+.+.+.+. +++++.++|+++..+++.   +.+...+|.  ++++|+||.|+|
T Consensus        45 --~~~~--~~~-----~~~~~~~~~~~l~~~~~~~-gv~~~~~~v~~v~~~~~~---~~v~~~~~~--~~~~d~liiAtG  109 (300)
T TIGR01292        45 --ENYP--GFP-----EGISGPELMEKMKEQAVKF-GAEIIYEEVIKVDLSDRP---FKVKTGDGK--EYTAKAVIIATG  109 (300)
T ss_pred             --cccC--CCC-----CCCChHHHHHHHHHHHHHc-CCeEEEEEEEEEEecCCe---eEEEeCCCC--EEEeCEEEECCC
Confidence              0000  000     0122335667778888777 677777779888876653   344455665  467999999999


Q ss_pred             Cccc
Q 010623          221 CFSN  224 (506)
Q Consensus       221 ~~S~  224 (506)
                      ....
T Consensus       110 ~~~~  113 (300)
T TIGR01292       110 ASAR  113 (300)
T ss_pred             CCcc
Confidence            8653

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=98.93  E-value=7.4e-09  Score=109.54  Aligned_cols=61  Identities=23%  Similarity=0.156  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHcCCCEEEEec-eEEEEEeeC---CeEEEEEEEe-CCccEEEEEcCeEEeecCCccc
Q 010623          163 RFVQRLREKAASLPNVRLEQG-TVTSLLEEK---GTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSN  224 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~---~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~  224 (506)
                      .+...+...+.+. +++++.. .++++..++   +++.||.+.+ .+|+...+.|+.||.|+|+++.
T Consensus       127 ~~~r~l~~~l~~~-~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~  192 (614)
T TIGR02061       127 SYKPIVAEAAKNA-LGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAVN  192 (614)
T ss_pred             hHHHHHHHHHHhC-CCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCcccc
Confidence            3445555555554 4677776 499998764   6899998754 5777778999999999999974

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.93  E-value=7.8e-09  Score=104.00  Aligned_cols=33  Identities=48%  Similarity=0.655  Sum_probs=31.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +||+|||||++|+++|+.|+++|.+|+|+|+..
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~   33 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSS   33 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            599999999999999999999999999999975

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PLN02612 phytoene desaturase

Probab=98.92  E-value=4.2e-07  Score=96.27  Aligned_cols=63  Identities=27%  Similarity=0.328  Sum_probs=47.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc------c------c----ccccchHHHHHHhCchhHH
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIV------G------E----LLQPGGYLKLIELGLEDCV  121 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~------g------~----~l~~~~~~~l~~~g~~~~~  121 (506)
                      ...+|+|||||++||++|+.|+++|++|+|+|+++.......      |      .    ...++..++++++|+.+.+
T Consensus        92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~~  170 (567)
T PLN02612         92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDRL  170 (567)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCcccc
Confidence            458999999999999999999999999999999864332111      1      0    1235667889999986543

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=98.91  E-value=1.4e-07  Score=86.70  Aligned_cols=166  Identities=18%  Similarity=0.265  Sum_probs=96.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC------CcEEEEecCCCCCCcc--cccc----cccchHHHHHH--hCchhHHh-h
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDG------RRVHVIERDLSEPDRI--VGEL----LQPGGYLKLIE--LGLEDCVE-Q  123 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G------~~v~vvE~~~~~~~~~--~g~~----l~~~~~~~l~~--~g~~~~~~-~  123 (506)
                      ...+|+|||||+.|.++|++|++++      +.++|+|+..-....+  .+..    ..+.-+.-|..  +.+.+.+. +
T Consensus         9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsde   88 (380)
T KOG2852|consen    9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDE   88 (380)
T ss_pred             CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHh
Confidence            3479999999999999999999998      8999999875322111  1111    11111111111  11222221 1


Q ss_pred             cccceecceEE---E------ECCceee----eecC----Cc---CCCCCcccccccchHHHHHHHHHHHcCCCEEEEec
Q 010623          124 IDAQRVFGYAL---F------KDGNRTQ----ISYP----LE---KFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG  183 (506)
Q Consensus       124 ~~~~~~~~~~~---~------~~~~~~~----~~~~----~~---~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~  183 (506)
                      ++.....+++.   |      .+-+...    +++-    ..   ..+.......++...|.+.++..+.+.++|++..+
T Consensus        89 ydGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~lv~G  168 (380)
T KOG2852|consen   89 YDGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKLVFG  168 (380)
T ss_pred             hcCcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeEEEEe
Confidence            12122222221   1      1111000    0000    00   01112223467888999999999999999999999


Q ss_pred             eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCccc
Q 010623          184 TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN  224 (506)
Q Consensus       184 ~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~  224 (506)
                      +|.++..+..++.++....+.+.......+.+|.+.|.|+.
T Consensus       169 kv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTs  209 (380)
T KOG2852|consen  169 KVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTS  209 (380)
T ss_pred             eeEEeecccccccccchhhhcCceEEeeeeEEEEecCCCch
Confidence            99999766666665544333343445678999999999984

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=2.3e-08  Score=96.57  Aligned_cols=114  Identities=27%  Similarity=0.360  Sum_probs=76.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRR-VHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD  137 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~-v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  137 (506)
                      ..+||+||||||+||+||+.+++.|++ ++|+|+... .    | .+.           ....+.               
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~-g----g-~~~-----------~~~~ve---------------   49 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEP-G----G-QLT-----------KTTDVE---------------   49 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCc-C----C-ccc-----------cceeec---------------
Confidence            358999999999999999999999999 777776531 1    0 000           000000               


Q ss_pred             CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEe
Q 010623          138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV  217 (506)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~  217 (506)
                            .||     ..+  ..+.-..|.+.+.+.+... ++++...+|.++...++   ..++.+.+|+   ++|+.||.
T Consensus        50 ------nyp-----g~~--~~~~g~~L~~~~~~~a~~~-~~~~~~~~v~~v~~~~~---~F~v~t~~~~---~~ak~vIi  109 (305)
T COG0492          50 ------NYP-----GFP--GGILGPELMEQMKEQAEKF-GVEIVEDEVEKVELEGG---PFKVKTDKGT---YEAKAVII  109 (305)
T ss_pred             ------CCC-----CCc--cCCchHHHHHHHHHHHhhc-CeEEEEEEEEEEeecCc---eEEEEECCCe---EEEeEEEE
Confidence                  011     000  0123446788888888866 78887777888877765   3566677776   56999999


Q ss_pred             ecCCccc
Q 010623          218 CDGCFSN  224 (506)
Q Consensus       218 AdG~~S~  224 (506)
                      |+|....
T Consensus       110 AtG~~~~  116 (305)
T COG0492         110 ATGAGAR  116 (305)
T ss_pred             CcCCccc
Confidence            9998764

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.90  E-value=9.3e-09  Score=102.28  Aligned_cols=114  Identities=19%  Similarity=0.193  Sum_probs=75.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc--------cccccccchHHHHHHhCchh-HHhhcccceecc
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI--------VGELLQPGGYLKLIELGLED-CVEQIDAQRVFG  131 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~--------~g~~l~~~~~~~l~~~g~~~-~~~~~~~~~~~~  131 (506)
                      .||+|||||++|+.+|+.|+++|++|+|+|+.+......        ..-....++...+...|++. .+...+.     
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll~~em~~lgs-----   77 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLLKEEMRRLGS-----   77 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCchHHHHHHhcc-----
Confidence            599999999999999999999999999999876542210        11123344556677788775 3333221     


Q ss_pred             eEEEECCceeeeecCCcCCCCCccc-ccccchHHHHHHHHHHHcCCCEEEEeceEEEEE
Q 010623          132 YALFKDGNRTQISYPLEKFHSDVAG-RGFHNGRFVQRLREKAASLPNVRLEQGTVTSLL  189 (506)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~  189 (506)
                      .. ......         ......+ ..++|..+.+.|.+.+.+.++++++.++|+++.
T Consensus        78 l~-~~aad~---------~~vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~~~eV~~l~  126 (436)
T PRK05335         78 LI-MEAADA---------HRVPAGGALAVDREGFSEYVTEALENHPLITVIREEVTEIP  126 (436)
T ss_pred             hh-eecccc---------cCCCCccceecCHHHHHHHHHHHHHcCCCcEEEccchhccc
Confidence            00 111000         0011122 357888899999999999999998866677764

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.89  E-value=3.3e-08  Score=110.17  Aligned_cols=164  Identities=24%  Similarity=0.282  Sum_probs=88.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC-ccc-c-cccc----c--chHH-HHHHh-----Cch--hHH
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD-RIV-G-ELLQ----P--GGYL-KLIEL-----GLE--DCV  121 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~-~~~-g-~~l~----~--~~~~-~l~~~-----g~~--~~~  121 (506)
                      .++||+|||||.+||++|+.+++.|.+|+|+||.+.... ... + .++.    +  .+.+ .+...     |+.  +.+
T Consensus        12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~~~sg~~~~g~~gi~~~~~~~~ds~e~~~~Dt~~~g~gl~d~~~v   91 (897)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHVRHSGALAMGMDGVNNAVIPGKAEPEDYVAEITRANDGIVNQRTV   91 (897)
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccccCCCcccCCchhhhcccCCCccCHHHHHHHHHhhcCCCCCHHHH
Confidence            469999999999999999999999999999999864211 100 0 0111    0  0111 11110     110  001


Q ss_pred             hhc--------ccceecceEEEE--CCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcC---CCEEEEece-EEE
Q 010623          122 EQI--------DAQRVFGYALFK--DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASL---PNVRLEQGT-VTS  187 (506)
Q Consensus       122 ~~~--------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~---~~v~i~~~~-v~~  187 (506)
                      ..+        ......|+.+..  +|......+.  ....... ..-.-..+...|.+.+.+.   .++.+.... +++
T Consensus        92 ~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~~--~~~~~~~-~~~tG~~i~~~L~~~l~~~~~~~~i~~~~~~~~~~  168 (897)
T PRK13800         92 YQTATRGFAMVQRLERYGVKFEKDEHGEYAVRRVH--RSGSYVL-PMPEGKDVKKALYRVLRQRSMRERIRIENRLMPVR  168 (897)
T ss_pred             HHHHHhHHHHHHHHHHcCCceeeCCCCCEeeeeec--cCCCccc-cCCCchhHHHHHHHHHHHhhhcCCcEEEeceeeEE
Confidence            100        000112222221  1111000000  0000000 0001123445555555443   256776664 788


Q ss_pred             EEeeCCeEEEEEEEe-CCccEEEEEcCeEEeecCCcccc
Q 010623          188 LLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL  225 (506)
Q Consensus       188 ~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~v  225 (506)
                      +..+++++.||.+.+ .+|+.+.+.|+.||.|+|+++.+
T Consensus       169 Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~  207 (897)
T PRK13800        169 VLTEGGRAVGAAALNTRTGEFVTVGAKAVILATGPCGRL  207 (897)
T ss_pred             EEeeCCEEEEEEEEecCCCcEEEEECCEEEECCCccccC
Confidence            887788899988754 57887889999999999999865

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.88  E-value=2e-08  Score=106.17  Aligned_cols=114  Identities=20%  Similarity=0.225  Sum_probs=74.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG  138 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (506)
                      ..+||+|||||||||++|..|+++|++|+|+|+...      |..+...           ..+.                
T Consensus         3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~------GG~~~~~-----------~~i~----------------   49 (555)
T TIGR03143         3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDF------GGQITIT-----------SEVV----------------   49 (555)
T ss_pred             CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC------CceEEec-----------cccc----------------
Confidence            359999999999999999999999999999998631      1111000           0000                


Q ss_pred             ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                           .++.        ...+....+.+.+.+.+.+. ++++..++|+++..+++.   ..+...+|+   +.++.||.|
T Consensus        50 -----~~pg--------~~~~~~~~l~~~l~~~~~~~-gv~~~~~~V~~i~~~~~~---~~V~~~~g~---~~a~~lVlA  109 (555)
T TIGR03143        50 -----NYPG--------ILNTTGPELMQEMRQQAQDF-GVKFLQAEVLDVDFDGDI---KTIKTARGD---YKTLAVLIA  109 (555)
T ss_pred             -----cCCC--------CcCCCHHHHHHHHHHHHHHc-CCEEeccEEEEEEecCCE---EEEEecCCE---EEEeEEEEC
Confidence                 0000        00112335667777777776 677777778888765442   234444553   568999999


Q ss_pred             cCCcccc
Q 010623          219 DGCFSNL  225 (506)
Q Consensus       219 dG~~S~v  225 (506)
                      +|++...
T Consensus       110 TGa~p~~  116 (555)
T TIGR03143       110 TGASPRK  116 (555)
T ss_pred             CCCccCC
Confidence            9997643

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.87  E-value=2.4e-08  Score=102.19  Aligned_cols=38  Identities=29%  Similarity=0.416  Sum_probs=34.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEecCCCC
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRR-VHVIERDLSE   95 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~-v~vvE~~~~~   95 (506)
                      ...+||+|||||++|+++|+.|.+.|++ ++|+||+...
T Consensus         6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~   44 (443)
T COG2072           6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDV   44 (443)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCc
Confidence            3468999999999999999999999998 9999999643

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.87  E-value=1.2e-08  Score=106.01  Aligned_cols=35  Identities=20%  Similarity=0.409  Sum_probs=32.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      ...|||+||||||+|+++|..|+++|.+|+|+|+.
T Consensus         2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~   36 (472)
T PRK05976          2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG   36 (472)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence            34699999999999999999999999999999986

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.87  E-value=1.9e-08  Score=101.60  Aligned_cols=142  Identities=20%  Similarity=0.171  Sum_probs=84.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchH----HHHHHhCchhHHhhcccceecceE
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGY----LKLIELGLEDCVEQIDAQRVFGYA  133 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~----~~l~~~g~~~~~~~~~~~~~~~~~  133 (506)
                      ...-+|+|||||||||++|..|.++|++|+++||.+.....-   ...+..-    .+.+.+-                 
T Consensus         4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW---~y~~~~~~~~ss~Y~~l~-----------------   63 (448)
T KOG1399|consen    4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLW---KYTENVEVVHSSVYKSLR-----------------   63 (448)
T ss_pred             CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceE---eecCcccccccchhhhhh-----------------
Confidence            346799999999999999999999999999999996532210   0111100    0011000                 


Q ss_pred             EEECCce-eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCC-EEEEece-EEEEEeeC-CeEEEEEEEeCCccEEE
Q 010623          134 LFKDGNR-TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPN-VRLEQGT-VTSLLEEK-GTIKGVQYKTKAGEELT  209 (506)
Q Consensus       134 ~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~-v~i~~~~-v~~~~~~~-~~v~~v~v~~~~G~~~~  209 (506)
                      .....+. ...++|+.+   ....+.-++.++.+.|.+.|++.+- ..+++++ |..+...+ ++. .|...+..+...+
T Consensus        64 tn~pKe~~~~~dfpf~~---~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW-~V~~~~~~~~~~~  139 (448)
T KOG1399|consen   64 TNLPKEMMGYSDFPFPE---RDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKW-RVTTKDNGTQIEE  139 (448)
T ss_pred             ccCChhhhcCCCCCCcc---cCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCce-eEEEecCCcceeE
Confidence            0000000 001122111   1112234566899999999998731 2466664 88888777 443 3555544432233


Q ss_pred             EEcCeEEeecCCcc
Q 010623          210 AYAPLTIVCDGCFS  223 (506)
Q Consensus       210 i~a~~vV~AdG~~S  223 (506)
                      .-+|.||.|+|.+.
T Consensus       140 ~ifd~VvVctGh~~  153 (448)
T KOG1399|consen  140 EIFDAVVVCTGHYV  153 (448)
T ss_pred             EEeeEEEEcccCcC
Confidence            45999999999983

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.87  E-value=2.7e-08  Score=103.28  Aligned_cols=36  Identities=33%  Similarity=0.379  Sum_probs=33.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +.+|||+||||||+|+.+|..|++.|.+|+|+|+.+
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~   37 (471)
T PRK06467          2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS   37 (471)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            346999999999999999999999999999999874

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.83  E-value=7.2e-07  Score=93.74  Aligned_cols=62  Identities=23%  Similarity=0.237  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccchhhc
Q 010623          163 RFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSL  229 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~~l  229 (506)
                      .+.+.|.+.+++. +++++.+ .|+++..+++++++|+  ..+|++  ++||.||.|.+......+.+
T Consensus       220 ~l~~al~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~V~--~~~g~~--~~ad~VI~a~~~~~~~~~l~  282 (502)
T TIGR02734       220 ALVAAMAKLAEDL-GGELRLNAEVIRIETEGGRATAVH--LADGER--LDADAVVSNADLHHTYRRLL  282 (502)
T ss_pred             HHHHHHHHHHHHC-CCEEEECCeEEEEEeeCCEEEEEE--ECCCCE--EECCEEEECCcHHHHHHHhc
Confidence            5677888888887 6677777 5999988877765554  566764  56999999998876665554

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=98.83  E-value=1.7e-06  Score=89.92  Aligned_cols=61  Identities=23%  Similarity=0.401  Sum_probs=45.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCCCCCccc-----c-------ccc---ccchHHHHHHhCchhHH
Q 010623           61 ADVIVVGAGVAGAALANTLAKD----GRRVHVIERDLSEPDRIV-----G-------ELL---QPGGYLKLIELGLEDCV  121 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~----G~~v~vvE~~~~~~~~~~-----g-------~~l---~~~~~~~l~~~g~~~~~  121 (506)
                      .||+|||||++||++|+.|+++    |++|+|+|+++....+..     |       ..+   .++..+.++++|+.+.+
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~~~   82 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDLGLEHVL   82 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHcCCCccc
Confidence            6999999999999999999999    999999999876543211     1       111   23356778888886543

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.83  E-value=4.9e-08  Score=101.38  Aligned_cols=34  Identities=38%  Similarity=0.565  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +|||+||||||+|+++|..|+++|.+|+|+||..
T Consensus         4 ~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~   37 (462)
T PRK06416          4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK   37 (462)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence            5999999999999999999999999999999874

>TIGR00275 flavoprotein, HI0933 family

Probab=98.83  E-value=6.2e-08  Score=98.33  Aligned_cols=138  Identities=20%  Similarity=0.254  Sum_probs=77.2

Q ss_pred             EEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc--cccc----cccchH-HHHHHh--------------CchhHHh
Q 010623           64 IVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI--VGEL----LQPGGY-LKLIEL--------------GLEDCVE  122 (506)
Q Consensus        64 vIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~--~g~~----l~~~~~-~~l~~~--------------g~~~~~~  122 (506)
                      +|||||++|+++|+.|+++|++|+|+||++......  .|.+    .+.... +.....              +..+.+.
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~   80 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID   80 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence            699999999999999999999999999987644321  1100    111111 111111              1111111


Q ss_pred             hcccceecceEEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEE
Q 010623          123 QIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYK  201 (506)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~  201 (506)
                      -+   ...+..+......  ..+|          ..-....+.+.|.+.+++. +++++.+ +|+++..+++.   +.+.
T Consensus        81 ~~---~~~Gv~~~~~~~g--~~~p----------~~~~a~~v~~~L~~~l~~~-gv~i~~~~~V~~i~~~~~~---~~v~  141 (400)
T TIGR00275        81 FF---ESLGLELKVEEDG--RVFP----------CSDSAADVLDALLNELKEL-GVEILTNSKVKSIKKDDNG---FGVE  141 (400)
T ss_pred             HH---HHcCCeeEEecCC--EeEC----------CCCCHHHHHHHHHHHHHHC-CCEEEeCCEEEEEEecCCe---EEEE
Confidence            00   0011111100000  0011          0012346778888888877 6778777 48998776553   3333


Q ss_pred             eCCccEEEEEcCeEEeecCCcc
Q 010623          202 TKAGEELTAYAPLTIVCDGCFS  223 (506)
Q Consensus       202 ~~~G~~~~i~a~~vV~AdG~~S  223 (506)
                      . +++  ++.+|.||.|+|.+|
T Consensus       142 ~-~~~--~i~ad~VIlAtG~~s  160 (400)
T TIGR00275       142 T-SGG--EYEADKVILATGGLS  160 (400)
T ss_pred             E-CCc--EEEcCEEEECCCCcc
Confidence            4 343  367999999999987

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.83  E-value=3.4e-08  Score=103.81  Aligned_cols=113  Identities=27%  Similarity=0.361  Sum_probs=76.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD  137 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  137 (506)
                      ...+||+||||||+|+++|..|+++|++|+|+|+..       |..+..       ..++.    .           +  
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~-------GG~~~~-------~~~~~----~-----------~--  257 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERF-------GGQVLD-------TMGIE----N-----------F--  257 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC-------CCeeec-------cCccc----c-----------c--
Confidence            346999999999999999999999999999997641       111100       00000    0           0  


Q ss_pred             CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623          138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI  216 (506)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV  216 (506)
                           ..++           .....++.+.|.+.+++. +++++.+ +|+++..+++.   +.+...+|++  +++|.||
T Consensus       258 -----~~~~-----------~~~~~~l~~~l~~~~~~~-gv~i~~~~~V~~I~~~~~~---~~V~~~~g~~--i~a~~vV  315 (517)
T PRK15317        258 -----ISVP-----------ETEGPKLAAALEEHVKEY-DVDIMNLQRASKLEPAAGL---IEVELANGAV--LKAKTVI  315 (517)
T ss_pred             -----CCCC-----------CCCHHHHHHHHHHHHHHC-CCEEEcCCEEEEEEecCCe---EEEEECCCCE--EEcCEEE
Confidence                 0000           123346778888888887 6888876 59998876553   3444566753  6799999


Q ss_pred             eecCCcc
Q 010623          217 VCDGCFS  223 (506)
Q Consensus       217 ~AdG~~S  223 (506)
                      .|+|..+
T Consensus       316 iAtG~~~  322 (517)
T PRK15317        316 LATGARW  322 (517)
T ss_pred             ECCCCCc
Confidence            9999976

>PRK07233 hypothetical protein; Provisional

Probab=98.81  E-value=1.6e-06  Score=89.28  Aligned_cols=36  Identities=42%  Similarity=0.555  Sum_probs=33.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD   97 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~   97 (506)
                      +|+|||||++||++|+.|+++|++|+|+|+++....
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG   36 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGG   36 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCC
Confidence            699999999999999999999999999999986544

>TIGR02731 phytoene_desat phytoene desaturase

Probab=98.80  E-value=8.4e-07  Score=92.00  Aligned_cols=59  Identities=32%  Similarity=0.356  Sum_probs=45.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc------------ccc----ccccchHHHHHHhCchhH
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI------------VGE----LLQPGGYLKLIELGLEDC  120 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~------------~g~----~l~~~~~~~l~~~g~~~~  120 (506)
                      +|+|||||++||++|+.|+++|++|+|+|+++....+.            .|.    ...++..+.++++|+.+.
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~   75 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDR   75 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccc
Confidence            58999999999999999999999999999987544321            110    123667788899998654

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.79  E-value=3.5e-08  Score=102.51  Aligned_cols=35  Identities=49%  Similarity=0.650  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      .+||+||||||+|+++|+.|+++|.+|+|+||.+.
T Consensus         5 ~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~   39 (461)
T PRK05249          5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRN   39 (461)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCEEEEEecccc
Confidence            59999999999999999999999999999999643

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=98.78  E-value=6e-08  Score=96.10  Aligned_cols=67  Identities=24%  Similarity=0.331  Sum_probs=55.2

Q ss_pred             hHHHHHHHHHHHcCCCEEEEece-EEEEEeeCC-eEEEEEEEeCCccEEEEEcCeEEeecCCcccchhh
Q 010623          162 GRFVQRLREKAASLPNVRLEQGT-VTSLLEEKG-TIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRS  228 (506)
Q Consensus       162 ~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~-~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~~  228 (506)
                      ..+...|.+.+++.+++++..+. +.++..+++ .+.|+.+...+++..+++++.||.|+|+-+.+=..
T Consensus       133 ~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~~  201 (518)
T COG0029         133 KEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGLYAY  201 (518)
T ss_pred             HHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCCCcccccc
Confidence            46889999999999999999995 899988887 55588887665566789999999999998866443

>PLN02487 zeta-carotene desaturase

Probab=98.78  E-value=3.2e-06  Score=88.79  Aligned_cols=62  Identities=21%  Similarity=0.323  Sum_probs=48.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc------ccc----------ccccchHHHHHHhCchhHH
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI------VGE----------LLQPGGYLKLIELGLEDCV  121 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~------~g~----------~l~~~~~~~l~~~g~~~~~  121 (506)
                      ..+|+|||||++||++|+.|+++|++|+|+|+.+......      .|.          ...++..++++++|+.+.+
T Consensus        75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~~  152 (569)
T PLN02487         75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENL  152 (569)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCcccc
Confidence            4699999999999999999999999999999987654211      111          1235577889999987654

>PRK14694 putative mercuric reductase; Provisional

Probab=98.78  E-value=1.4e-07  Score=98.11  Aligned_cols=35  Identities=31%  Similarity=0.446  Sum_probs=32.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .++||+||||||+|+++|..|++.|.+|+|+|+..
T Consensus         5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~   39 (468)
T PRK14694          5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERGT   39 (468)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence            36999999999999999999999999999999863

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.76  E-value=1e-07  Score=98.31  Aligned_cols=34  Identities=44%  Similarity=0.625  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +|||+||||||+|+++|+.|+++|++|+|+|+.+
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~   36 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN   36 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence            5999999999999999999999999999999974

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.76  E-value=6.4e-08  Score=101.05  Aligned_cols=170  Identities=21%  Similarity=0.261  Sum_probs=93.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccc--cccc-----cc-----hHHHHH-Hh-----Cc--
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVG--ELLQ-----PG-----GYLKLI-EL-----GL--  117 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g--~~l~-----~~-----~~~~l~-~~-----g~--  117 (506)
                      ..++||||||||.|||.+|+.+++.|.+|+|+||.+........  .+++     ..     +.+.+. ..     ++  
T Consensus         4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~d   83 (562)
T COG1053           4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGLGD   83 (562)
T ss_pred             cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhccCCcCC
Confidence            34699999999999999999999999999999998654432210  0111     00     111110 00     01  


Q ss_pred             hhHHhhcccc--------eecceEE--EECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EE
Q 010623          118 EDCVEQIDAQ--------RVFGYAL--FKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VT  186 (506)
Q Consensus       118 ~~~~~~~~~~--------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~  186 (506)
                      .+.+..+...        ...+..+  +.+|......+.............-.-..+...|.+.+.+..++.+.... ++
T Consensus        84 qd~i~~~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~~~~~~~  163 (562)
T COG1053          84 QDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIFDEYFVL  163 (562)
T ss_pred             HHHHHHHHHhhHHHHHHHHHhCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchhhhhhhhh
Confidence            1111111000        0011111  11121111111100000011111111235778888888886566666664 89


Q ss_pred             EEEeeCCe-EEEEEEEe-CCccEEEEEcCeEEeecCCcccchh
Q 010623          187 SLLEEKGT-IKGVQYKT-KAGEELTAYAPLTIVCDGCFSNLRR  227 (506)
Q Consensus       187 ~~~~~~~~-v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~vR~  227 (506)
                      ++..++++ +.|+...+ .+|+.+.++++.||.|+|+...+..
T Consensus       164 ~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g~~~~  206 (562)
T COG1053         164 DLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAGRLYP  206 (562)
T ss_pred             hheecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCceEEEe
Confidence            98866554 77776655 6788888889999999999984433

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=98.74  E-value=7.3e-06  Score=85.27  Aligned_cols=60  Identities=20%  Similarity=0.284  Sum_probs=44.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCCcccc------------ccc---ccchHHHHHHhCchhH
Q 010623           62 DVIVVGAGVAGAALANTLAKD------GRRVHVIERDLSEPDRIVG------------ELL---QPGGYLKLIELGLEDC  120 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~------G~~v~vvE~~~~~~~~~~g------------~~l---~~~~~~~l~~~g~~~~  120 (506)
                      +|+|||||++||++|+.|++.      |++|+|+|+++....+...            ..+   +++..+.++++|+.+.
T Consensus         3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~~~~~~~~l~~~lgl~~~   82 (463)
T PRK12416          3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDLNLEEE   82 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhcCCHHHHHHHHHcCCccc
Confidence            699999999999999999986      4899999999765543211            112   2334577888888654


Q ss_pred             H
Q 010623          121 V  121 (506)
Q Consensus       121 ~  121 (506)
                      +
T Consensus        83 ~   83 (463)
T PRK12416         83 M   83 (463)
T ss_pred             e
Confidence            3

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=98.74  E-value=3.5e-06  Score=87.47  Aligned_cols=60  Identities=27%  Similarity=0.355  Sum_probs=45.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc------cc----------ccccchHHHHHHhCchhHH
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIV------GE----------LLQPGGYLKLIELGLEDCV  121 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~------g~----------~l~~~~~~~l~~~g~~~~~  121 (506)
                      +|+|||||++||++|+.|++.|++|+|+|+++....+..      |.          ...++..+.++++|+.+.+
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~   76 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNL   76 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCcccc
Confidence            589999999999999999999999999999876543211      11          0124456778888887554

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.73  E-value=9.1e-08  Score=100.46  Aligned_cols=113  Identities=27%  Similarity=0.373  Sum_probs=75.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD  137 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  137 (506)
                      ...+||+||||||+|+++|..|++.|++|+|+|...       |..+..       ..++.    +.             
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~-------GG~~~~-------~~~~~----~~-------------  258 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERI-------GGQVKD-------TVGIE----NL-------------  258 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC-------CCcccc-------CcCcc----cc-------------
Confidence            346999999999999999999999999999997531       111100       00000    00             


Q ss_pred             CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623          138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI  216 (506)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV  216 (506)
                           ...+           .....++...+.+.+++. ++.++.+ +|+++..+++.   +.+..++|+  ++++|.+|
T Consensus       259 -----~~~~-----------~~~~~~l~~~l~~~l~~~-gv~i~~~~~V~~I~~~~~~---~~v~~~~g~--~i~~d~lI  316 (515)
T TIGR03140       259 -----ISVP-----------YTTGSQLAANLEEHIKQY-PIDLMENQRAKKIETEDGL---IVVTLESGE--VLKAKSVI  316 (515)
T ss_pred             -----cccC-----------CCCHHHHHHHHHHHHHHh-CCeEEcCCEEEEEEecCCe---EEEEECCCC--EEEeCEEE
Confidence                 0000           012345677788888777 7888776 58888766553   344456675  46799999


Q ss_pred             eecCCcc
Q 010623          217 VCDGCFS  223 (506)
Q Consensus       217 ~AdG~~S  223 (506)
                      .|+|...
T Consensus       317 lAtGa~~  323 (515)
T TIGR03140       317 VATGARW  323 (515)
T ss_pred             ECCCCCc
Confidence            9999864

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.72  E-value=1.3e-07  Score=98.48  Aligned_cols=33  Identities=39%  Similarity=0.460  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEec
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIER   91 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~   91 (506)
                      .+|||+||||||+|+++|+.|++.|.+|+|+|+
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~   35 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA   35 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            369999999999999999999999999999998

>PLN02507 glutathione reductase

Probab=98.72  E-value=1.9e-07  Score=97.50  Aligned_cols=34  Identities=35%  Similarity=0.511  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      .+|||+||||||+|+.+|..|+++|.+|+|+|+.
T Consensus        24 ~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~   57 (499)
T PLN02507         24 YDFDLFVIGAGSGGVRAARFSANFGAKVGICELP   57 (499)
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            3699999999999999999999999999999973

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.72  E-value=1.5e-07  Score=97.61  Aligned_cols=34  Identities=26%  Similarity=0.395  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +|||+||||||+|+++|..++++|.+|+|+|++.
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~   36 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRS   36 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            5999999999999999999999999999999753

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.71  E-value=1.6e-07  Score=96.67  Aligned_cols=63  Identities=19%  Similarity=0.218  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHcCCCEEEEece-EEEEEee--CCeEEEEEEEeCCccEEEEEcCeEEeecCCcccchhhc
Q 010623          163 RFVQRLREKAASLPNVRLEQGT-VTSLLEE--KGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSL  229 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~--~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~~l  229 (506)
                      .+.+.|.+.+++. +++++.++ |+++..+  ++.+++|... .++  .+++|+.||.|+|.++..++++
T Consensus       124 ~l~~~L~~~a~~~-Gv~i~~~~~v~~l~~~~~~g~v~gv~~~-~~~--~~i~ak~VIlAtGG~~~n~~~~  189 (432)
T TIGR02485       124 ALTNALYSSAERL-GVEIRYGIAVDRIPPEAFDGAHDGPLTT-VGT--HRITTQALVLAAGGLGANRDWL  189 (432)
T ss_pred             HHHHHHHHHHHHc-CCEEEeCCEEEEEEecCCCCeEEEEEEc-CCc--EEEEcCEEEEcCCCcccCHHHH
Confidence            5778888888887 67887774 9999876  4667766642 222  3578999999999999877655

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.71  E-value=1.7e-07  Score=96.70  Aligned_cols=33  Identities=36%  Similarity=0.578  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      +|||+||||||+|+++|+.++++|++|+|+|+.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~   34 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP   34 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence            589999999999999999999999999999985

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.71  E-value=1.6e-07  Score=94.29  Aligned_cols=115  Identities=27%  Similarity=0.315  Sum_probs=71.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc-----ccc---ccccchHHHHHHhCchh-HHhhcccceecc
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI-----VGE---LLQPGGYLKLIELGLED-CVEQIDAQRVFG  131 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~-----~g~---~l~~~~~~~l~~~g~~~-~~~~~~~~~~~~  131 (506)
                      +||+|||||++|+.+|+.|+++|++|+|+|+++......     .+.   ....++...+...|++. .+...+.     
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p~~~~~~~~elvcs~Slgg~~l~~a~Gil~~ei~~lg~-----   75 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTPAHHTEDLAELVCSNSLGAKALDRAAGLLKTEMRQLSS-----   75 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCchhhhhhhhhhcccccccchhHHhccCcHHHHHhhcCe-----
Confidence            489999999999999999999999999999876532210     000   12233455666677663 2222111     


Q ss_pred             eEEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEE
Q 010623          132 YALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLL  189 (506)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~  189 (506)
                      . .........  .+      ......++|..+.+.+.+.+.+.+++++....++++.
T Consensus        76 l-~~~~ad~~~--Ip------agg~~~vDR~lF~~~L~~qLe~~pnItviq~eV~dL~  124 (433)
T TIGR00137        76 L-IITAADRHA--VP------AGGALAVDRGIFSRSLTEQVASHPNVTLIREEVTEIP  124 (433)
T ss_pred             e-eeehhhhhC--CC------CCceEEehHHHHHHHHHHHHHhCCCcEEEeeeeEEEc
Confidence            1 111000000  00      1112356888899999999998888887766666554

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK10262 thioredoxin reductase; Provisional

Probab=98.70  E-value=2.5e-07  Score=91.28  Aligned_cols=113  Identities=14%  Similarity=0.224  Sum_probs=70.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG  138 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (506)
                      ...||+||||||+||++|..|+++|++++++|+.. ..    | .+...                   ..     .    
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~-~g----g-~~~~~-------------------~~-----~----   50 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGME-KG----G-QLTTT-------------------TE-----V----   50 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeec-CC----C-ceecC-------------------ce-----E----
Confidence            35899999999999999999999999999999652 11    1 11000                   00     0    


Q ss_pred             ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                          ..++..       ...++...+.+.+.+.+... +..++.++|+++...++.   +++..+++   ++++|.||.|
T Consensus        51 ----~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~v~~~~~~---~~v~~~~~---~~~~d~vilA  112 (321)
T PRK10262         51 ----ENWPGD-------PNDLTGPLLMERMHEHATKF-ETEIIFDHINKVDLQNRP---FRLTGDSG---EYTCDALIIA  112 (321)
T ss_pred             ----CCCCCC-------CCCCCHHHHHHHHHHHHHHC-CCEEEeeEEEEEEecCCe---EEEEecCC---EEEECEEEEC
Confidence                000000       00122334566677777766 456666677777766553   34443333   3679999999


Q ss_pred             cCCcc
Q 010623          219 DGCFS  223 (506)
Q Consensus       219 dG~~S  223 (506)
                      +|.+.
T Consensus       113 tG~~~  117 (321)
T PRK10262        113 TGASA  117 (321)
T ss_pred             CCCCC
Confidence            99875

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.68  E-value=9.2e-08  Score=99.77  Aligned_cols=140  Identities=21%  Similarity=0.225  Sum_probs=77.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHH-HhCchhHHhhcccceecceEEEECCce
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLI-ELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~-~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      +|+|||||++||++|..|.+.|++++++||++...    |  ++...-..-. ...+.+.+..             +-..
T Consensus         3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iG----G--~W~~~~~~~~g~~~~y~sl~~-------------n~sk   63 (531)
T PF00743_consen    3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIG----G--LWRYTENPEDGRSSVYDSLHT-------------NTSK   63 (531)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSS----G--GGCHSTTCCCSEGGGSTT-B--------------SS-G
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCC----c--cCeeCCcCCCCccccccceEE-------------eeCc
Confidence            79999999999999999999999999999996432    1  1110000000 0001111100             0000


Q ss_pred             eee---ecCCcCCCCCcccccccchHHHHHHHHHHHcCCC-EEEEece-EEEEEeeCCe--EEEEEEEe-CCccEEEEEc
Q 010623          141 TQI---SYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPN-VRLEQGT-VTSLLEEKGT--IKGVQYKT-KAGEELTAYA  212 (506)
Q Consensus       141 ~~~---~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~-v~i~~~~-v~~~~~~~~~--v~~v~v~~-~~G~~~~i~a  212 (506)
                      ...   ++|+.+   . .....++.++.+.|.+.++..+- ..+++++ |+++...++.  ...+++++ .+|+..+-.+
T Consensus        64 ~~~~fsdfp~p~---~-~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~f  139 (531)
T PF00743_consen   64 EMMAFSDFPFPE---D-YPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEF  139 (531)
T ss_dssp             GGSCCTTS-HCC---C-CSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEE
T ss_pred             hHhcCCCcCCCC---C-CCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEe
Confidence            001   111111   1 11245788999999999998732 2466664 9999876431  11234444 4565555568


Q ss_pred             CeEEeecCCccc
Q 010623          213 PLTIVCDGCFSN  224 (506)
Q Consensus       213 ~~vV~AdG~~S~  224 (506)
                      |.||.|+|.++.
T Consensus       140 D~VvvatG~~~~  151 (531)
T PF00743_consen  140 DAVVVATGHFSK  151 (531)
T ss_dssp             CEEEEEE-SSSC
T ss_pred             CeEEEcCCCcCC
Confidence            999999999883

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.68  E-value=2.3e-07  Score=95.63  Aligned_cols=34  Identities=41%  Similarity=0.662  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +|||+||||||+|+++|..|++.|.+|+|+||.+
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~   36 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESK   36 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence            5999999999999999999999999999999975

>PRK06116 glutathione reductase; Validated

Probab=98.67  E-value=2.1e-07  Score=96.38  Aligned_cols=34  Identities=44%  Similarity=0.580  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      .+|||+||||||+|+++|+.|+++|++|+|+|+.
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~   36 (450)
T PRK06116          3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK   36 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            4699999999999999999999999999999986

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.67  E-value=1.3e-07  Score=88.07  Aligned_cols=161  Identities=22%  Similarity=0.317  Sum_probs=96.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc--cccccccchHHHHHHhCchhHHhhccccee-----cc---
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI--VGELLQPGGYLKLIELGLEDCVEQIDAQRV-----FG---  131 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~--~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~-----~~---  131 (506)
                      .|+|||+|.|||+++..+-..|-.|+++|+.......+  ...+|+....+..+.+++.|...-+.....     .+   
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~e   90 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVPE   90 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcHH
Confidence            79999999999999999988877799999987655433  234566666676667766544322111100     00   


Q ss_pred             -----------eEEEECCceeeeecCCcC--------CCCCc--ccccccchHHHHHHH----HHHHcCCC-EEEEec-e
Q 010623          132 -----------YALFKDGNRTQISYPLEK--------FHSDV--AGRGFHNGRFVQRLR----EKAASLPN-VRLEQG-T  184 (506)
Q Consensus       132 -----------~~~~~~~~~~~~~~~~~~--------~~~~~--~~~~i~~~~l~~~L~----~~~~~~~~-v~i~~~-~  184 (506)
                                 ..-|..++   +...++.        .+...  .+...+--.+..+|.    +.+.+.|. +.+... +
T Consensus        91 Lm~~La~~S~~AvewL~~e---f~lkld~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~nsk  167 (477)
T KOG2404|consen   91 LMEKLAANSASAVEWLRGE---FDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKILLNSK  167 (477)
T ss_pred             HHHHHHhcCHHHHHHHhhh---cccchHHHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhhcce
Confidence                       00010000   0000000        00000  000011113444444    44444432 344444 6


Q ss_pred             EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccc
Q 010623          185 VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNL  225 (506)
Q Consensus       185 v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~v  225 (506)
                      |+++..++++|.+|++.+.+|+...+.++.||.|+|+++--
T Consensus       168 vv~il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~ys  208 (477)
T KOG2404|consen  168 VVDILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGYS  208 (477)
T ss_pred             eeeeecCCCeEEEEEEEcCCCCccceecCceEEecCCcCcC
Confidence            99999999999999999999988778899999999999854

>PRK07208 hypothetical protein; Provisional

Probab=98.66  E-value=4.6e-07  Score=94.70  Aligned_cols=40  Identities=35%  Similarity=0.435  Sum_probs=35.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD   97 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~   97 (506)
                      +...||+|||||++||++|+.|+++|++|+|+|+++....
T Consensus         2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG   41 (479)
T PRK07208          2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGG   41 (479)
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence            4568999999999999999999999999999999875443

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.66  E-value=9.1e-07  Score=91.35  Aligned_cols=61  Identities=18%  Similarity=0.183  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHcCCCEEEEece-EEEEEee--C--CeEEEEEEEeCC--ccEEEEEcCeEEeecCCccc
Q 010623          163 RFVQRLREKAASLPNVRLEQGT-VTSLLEE--K--GTIKGVQYKTKA--GEELTAYAPLTIVCDGCFSN  224 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~--~--~~v~~v~v~~~~--G~~~~i~a~~vV~AdG~~S~  224 (506)
                      .+..-|.+.++++ |++++.++ |+++..+  +  +.|+++.+..++  ++......|+||.+.|....
T Consensus       227 SLV~PL~~~Le~~-GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~  294 (576)
T PRK13977        227 SLVLPLIKYLEDH-GVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITE  294 (576)
T ss_pred             HHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCcc
Confidence            4667788899988 78888885 9999874  3  457888876422  22223458999999998764

>PRK13748 putative mercuric reductase; Provisional

Probab=98.64  E-value=5.6e-07  Score=95.91  Aligned_cols=34  Identities=38%  Similarity=0.465  Sum_probs=32.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      .++||+||||||+|+++|..|+++|.+|+|+|++
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~  130 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG  130 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence            3699999999999999999999999999999986

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.63  E-value=5.9e-07  Score=93.34  Aligned_cols=34  Identities=35%  Similarity=0.469  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      .++||+||||||+|+++|..|+++|.+|+|+|++
T Consensus         3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~   36 (466)
T PRK07818          3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK   36 (466)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            3599999999999999999999999999999986

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=98.63  E-value=9.9e-06  Score=80.10  Aligned_cols=41  Identities=44%  Similarity=0.605  Sum_probs=36.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDR   98 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~   98 (506)
                      ....||+|||||.+||++|+.|.+.|++|+|+|.++....+
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR   45 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGR   45 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCce
Confidence            34689999999999999999999999999999998765543

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.63  E-value=4.9e-07  Score=89.48  Aligned_cols=78  Identities=22%  Similarity=0.202  Sum_probs=61.7

Q ss_pred             ccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEeecCCcc-cchhhccC
Q 010623          155 AGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFS-NLRRSLCN  231 (506)
Q Consensus       155 ~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S-~vR~~l~~  231 (506)
                      .+.-++-+.|.+.|.+.+.+.+++++++++ |+++.+.+++-+.|.+.+ .+|+..+++|++|+...|+.| ++-+..++
T Consensus       174 ~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi  253 (488)
T PF06039_consen  174 EGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGI  253 (488)
T ss_pred             CCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCC
Confidence            345677889999999999998889999885 999999877645566654 467778899999999999998 55555665


Q ss_pred             C
Q 010623          232 P  232 (506)
Q Consensus       232 ~  232 (506)
                      +
T Consensus       254 ~  254 (488)
T PF06039_consen  254 P  254 (488)
T ss_pred             h
Confidence            3

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.58  E-value=2.8e-07  Score=95.75  Aligned_cols=32  Identities=34%  Similarity=0.552  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      |||+||||||+|+++|..|+++|.+|+|+|+.
T Consensus         2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~   33 (461)
T TIGR01350         2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEKE   33 (461)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            89999999999999999999999999999993

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.58  E-value=3.2e-07  Score=83.75  Aligned_cols=36  Identities=39%  Similarity=0.589  Sum_probs=32.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP   96 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~   96 (506)
                      .+|+|||+||+|++||+.|+..|++|+|+||.....
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvG   37 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVG   37 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcc
Confidence            369999999999999999999999999999986543

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.57  E-value=4.1e-07  Score=93.93  Aligned_cols=33  Identities=30%  Similarity=0.516  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      +|||+||||||+|+++|+.|++.|.+|+|+||.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~   34 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK   34 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc
Confidence            599999999999999999999999999999986

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PTZ00058 glutathione reductase; Provisional

Probab=98.57  E-value=4e-07  Score=95.66  Aligned_cols=38  Identities=32%  Similarity=0.510  Sum_probs=34.4

Q ss_pred             CCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           55 GECPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        55 ~~~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      +....+|||+||||||+|.++|..+++.|.+|+|+||+
T Consensus        43 ~~~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~   80 (561)
T PTZ00058         43 KKPRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD   80 (561)
T ss_pred             cCCCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence            33446799999999999999999999999999999986

>PRK14727 putative mercuric reductase; Provisional

Probab=98.57  E-value=1.3e-06  Score=90.94  Aligned_cols=36  Identities=33%  Similarity=0.437  Sum_probs=33.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +.++||+||||||+|+++|..|+++|.+|+|+|+..
T Consensus        14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~   49 (479)
T PRK14727         14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGAD   49 (479)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence            346999999999999999999999999999999874

>PRK06370 mercuric reductase; Validated

Probab=98.56  E-value=5.8e-07  Score=93.36  Aligned_cols=37  Identities=46%  Similarity=0.555  Sum_probs=33.8

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        57 ~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      |+.++||+||||||+|+++|+.|++.|++|+|+|+..
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~   38 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL   38 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence            3456999999999999999999999999999999863

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=98.54  E-value=1.6e-07  Score=93.92  Aligned_cols=146  Identities=23%  Similarity=0.287  Sum_probs=90.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC-Cccccccccc----chHHHHHHhCc-hhHHhhcccceecce
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP-DRIVGELLQP----GGYLKLIELGL-EDCVEQIDAQRVFGY  132 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~-~~~~g~~l~~----~~~~~l~~~g~-~~~~~~~~~~~~~~~  132 (506)
                      ..|||+|||||-||+-||++.||.|.++.++--+...- .-+|.-.+..    .-++..+.||= .......     .+ 
T Consensus         3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~-----~~-   76 (621)
T COG0445           3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADK-----AG-   76 (621)
T ss_pred             CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhh-----cC-
Confidence            35999999999999999999999999999998875321 1111111110    01112222221 1111000     00 


Q ss_pred             EEEECCceeeeecCCcCCCCCccc----ccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCC-eEEEEEEEeCCccE
Q 010623          133 ALFKDGNRTQISYPLEKFHSDVAG----RGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKG-TIKGVQYKTKAGEE  207 (506)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~-~v~~v~v~~~~G~~  207 (506)
                                +.+.+.+....|..    ..+++......+.+.+...++..++.+.|+++..+++ +|.||.  +.+|..
T Consensus        77 ----------IQ~r~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~--t~~G~~  144 (621)
T COG0445          77 ----------IQFRMLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVV--TADGPE  144 (621)
T ss_pred             ----------CchhhccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEE--eCCCCe
Confidence                      11111111111111    2356666777888888888999999999999988666 477666  677874


Q ss_pred             EEEEcCeEEeecCCccc
Q 010623          208 LTAYAPLTIVCDGCFSN  224 (506)
Q Consensus       208 ~~i~a~~vV~AdG~~S~  224 (506)
                        +.|+.||.++|-+-.
T Consensus       145 --~~a~aVVlTTGTFL~  159 (621)
T COG0445         145 --FHAKAVVLTTGTFLR  159 (621)
T ss_pred             --eecCEEEEeeccccc
Confidence              669999999997743

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.54  E-value=1.5e-07  Score=85.95  Aligned_cols=32  Identities=41%  Similarity=0.693  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ||+|||||++|+++|..|++.|++|+|+|+.+
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~   32 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP   32 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence            79999999999999999999999999998874

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=98.53  E-value=1.1e-06  Score=89.57  Aligned_cols=65  Identities=20%  Similarity=0.250  Sum_probs=50.8

Q ss_pred             cccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCccc
Q 010623          154 VAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN  224 (506)
Q Consensus       154 ~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~  224 (506)
                      |....++...+.++|...|.+. |+.+.++ .|+++.-..++..+|+  +.-|.   |++..+|+|+|.|..
T Consensus       179 P~DG~~DP~~lC~ala~~A~~~-GA~viE~cpV~~i~~~~~~~~gVe--T~~G~---iet~~~VNaaGvWAr  244 (856)
T KOG2844|consen  179 PGDGVMDPAGLCQALARAASAL-GALVIENCPVTGLHVETDKFGGVE--TPHGS---IETECVVNAAGVWAR  244 (856)
T ss_pred             CCCcccCHHHHHHHHHHHHHhc-CcEEEecCCcceEEeecCCcccee--ccCcc---eecceEEechhHHHH
Confidence            3445678889999999999999 5666666 5999987766655555  66675   779999999999983

>PLN02546 glutathione reductase

Probab=98.52  E-value=5.6e-07  Score=94.60  Aligned_cols=33  Identities=27%  Similarity=0.428  Sum_probs=31.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEec
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIER   91 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~   91 (506)
                      .+|||+||||||+|..+|..|+++|.+|+|+|+
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~  110 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCEL  110 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            359999999999999999999999999999996

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.52  E-value=3.9e-05  Score=78.37  Aligned_cols=41  Identities=27%  Similarity=0.383  Sum_probs=36.7

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 010623           57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD   97 (506)
Q Consensus        57 ~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~   97 (506)
                      |+.++||+|||+|.+|+.+|..|++.|.+|+++|+++....
T Consensus         1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG   41 (443)
T PTZ00363          1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGG   41 (443)
T ss_pred             CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCc
Confidence            34579999999999999999999999999999999976443

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.52  E-value=1.3e-07  Score=69.57  Aligned_cols=32  Identities=44%  Similarity=0.604  Sum_probs=28.8

Q ss_pred             EECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010623           65 VVGAGVAGAALANTLAKDGRRVHVIERDLSEP   96 (506)
Q Consensus        65 IVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~   96 (506)
                      |||||++||++|+.|++.|++|+|+|+++...
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G   32 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG   32 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence            89999999999999999999999999997543

...

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.52  E-value=1.4e-06  Score=90.53  Aligned_cols=145  Identities=19%  Similarity=0.227  Sum_probs=76.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchH---HHHHHhCchhHHhhcccceecceEEEECC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGY---LKLIELGLEDCVEQIDAQRVFGYALFKDG  138 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~---~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (506)
                      ||+||||||+|+.+|..|+++|.+|+|+||...     .|..++.+.+   ..+....+.+...+.   ...++.. ...
T Consensus         3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~-----gG~c~~~gciPsK~l~~~a~~~~~~~~~---~~~g~~~-~~~   73 (466)
T PRK07845          3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDGL-----GGAAVLTDCVPSKTLIATAEVRTELRRA---AELGIRF-IDD   73 (466)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEEccCC-----CCcccccCCcchHHHHHHHHHHHHHHHH---HhCCccc-ccC
Confidence            899999999999999999999999999998742     1222222111   122221222222111   0011110 000


Q ss_pred             ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEE--eeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623          139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLL--EEKGTIKGVQYKTKAGEELTAYAPLTI  216 (506)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~--~~~~~v~~v~v~~~~G~~~~i~a~~vV  216 (506)
                      ......++  ... .... .+ ...+...+.+.+.+. +++++.++++.+.  .+++   .+++.+.+|+..++++|.||
T Consensus        74 ~~~~~~~~--~~~-~~~~-~~-~~~~~~~~~~~l~~~-gV~~~~g~~~~~~~~~~~~---~v~V~~~~g~~~~~~~d~lV  144 (466)
T PRK07845         74 GEARVDLP--AVN-ARVK-AL-AAAQSADIRARLERE-GVRVIAGRGRLIDPGLGPH---RVKVTTADGGEETLDADVVL  144 (466)
T ss_pred             cccccCHH--HHH-HHHH-HH-HHHHHHHHHHHHHHC-CCEEEEEEEEEeecccCCC---EEEEEeCCCceEEEecCEEE
Confidence            00000000  000 0000 00 011223444555555 7999999876644  3334   35566667764568899999


Q ss_pred             eecCCccc
Q 010623          217 VCDGCFSN  224 (506)
Q Consensus       217 ~AdG~~S~  224 (506)
                      .|+|....
T Consensus       145 iATGs~p~  152 (466)
T PRK07845        145 IATGASPR  152 (466)
T ss_pred             EcCCCCCC
Confidence            99998764

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=98.51  E-value=1.1e-06  Score=85.60  Aligned_cols=61  Identities=23%  Similarity=0.312  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHcCCCEEEEece-EEEEEee--CCeEEEEEEEeCCcc--EEEEEcCeEEeecCCccc
Q 010623          164 FVQRLREKAASLPNVRLEQGT-VTSLLEE--KGTIKGVQYKTKAGE--ELTAYAPLTIVCDGCFSN  224 (506)
Q Consensus       164 l~~~L~~~~~~~~~v~i~~~~-v~~~~~~--~~~v~~v~v~~~~G~--~~~i~a~~vV~AdG~~S~  224 (506)
                      ........+.+.++.+++.++ |+++..+  ++++++|++.+.++.  ...+.++.||.|.|+-..
T Consensus       194 ~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~T  259 (296)
T PF00732_consen  194 AATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGT  259 (296)
T ss_dssp             HHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHH
T ss_pred             hhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCC
Confidence            344444455566789999885 9999654  788999999988776  556789999999998554

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.51  E-value=1.8e-06  Score=97.26  Aligned_cols=36  Identities=42%  Similarity=0.569  Sum_probs=33.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      ..+||+|||||||||++|+.|++.|++|+|+|+.+.
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~  197 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPE  197 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            468999999999999999999999999999999864

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.47  E-value=7.4e-07  Score=77.86  Aligned_cols=30  Identities=20%  Similarity=0.420  Sum_probs=27.0

Q ss_pred             EEECCCHHHHHHHHHHHHC-----CCcEEEEecCC
Q 010623           64 IVVGAGVAGAALANTLAKD-----GRRVHVIERDL   93 (506)
Q Consensus        64 vIVGgG~aGl~~A~~La~~-----G~~v~vvE~~~   93 (506)
                      +|||||++|++++..|.++     ..+|+|+|+.+
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~   35 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP   35 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence            5999999999999999887     57999999964

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.47  E-value=1.4e-06  Score=90.40  Aligned_cols=32  Identities=34%  Similarity=0.561  Sum_probs=30.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +|+||||||+|+++|..|++.|.+|+|+||++
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~   33 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD   33 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence            79999999999999999999999999999974

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.46  E-value=2.6e-06  Score=88.65  Aligned_cols=33  Identities=36%  Similarity=0.539  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      +|||+||||||+|+.+|+.+++.|.+|+|+|+.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~   34 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV   34 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            489999999999999999999999999999985

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>TIGR02053 MerA mercuric reductase

Probab=98.44  E-value=1.5e-05  Score=82.89  Aligned_cols=33  Identities=33%  Similarity=0.477  Sum_probs=31.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      |||+||||||+|+++|..|+++|.+|+|+||.+
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~   33 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP   33 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            699999999999999999999999999999864

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=98.43  E-value=3.6e-06  Score=85.22  Aligned_cols=57  Identities=25%  Similarity=0.318  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCc
Q 010623          163 RFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCF  222 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~  222 (506)
                      ++.+.|.+.+++. +++++.+ +|++++.+++++..+.  ..+|+..+++||.||.|+|.+
T Consensus       260 rL~~aL~~~l~~~-Gv~I~~g~~V~~v~~~~~~V~~v~--~~~g~~~~i~AD~VVLAtGrf  317 (422)
T PRK05329        260 RLQNALRRAFERL-GGRIMPGDEVLGAEFEGGRVTAVW--TRNHGDIPLRARHFVLATGSF  317 (422)
T ss_pred             HHHHHHHHHHHhC-CCEEEeCCEEEEEEEeCCEEEEEE--eeCCceEEEECCEEEEeCCCc
Confidence            4667788888777 6777777 5999988777655433  445665678899999999975

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.42  E-value=3.9e-06  Score=87.71  Aligned_cols=33  Identities=30%  Similarity=0.515  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      .|||+||||||+|+++|..|+++|.+|+|+|+.
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~   37 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV   37 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence            589999999999999999999999999999974

>TIGR02462 pyranose_ox pyranose oxidase

Probab=98.42  E-value=4.4e-06  Score=86.89  Aligned_cols=57  Identities=14%  Similarity=0.195  Sum_probs=45.0

Q ss_pred             cCCCEEEEece-EEEEEeeC---CeEEEEEEEeC-CccEEEEEcCeEEeecCCcccchhhcc
Q 010623          174 SLPNVRLEQGT-VTSLLEEK---GTIKGVQYKTK-AGEELTAYAPLTIVCDGCFSNLRRSLC  230 (506)
Q Consensus       174 ~~~~v~i~~~~-v~~~~~~~---~~v~~v~v~~~-~G~~~~i~a~~vV~AdG~~S~vR~~l~  230 (506)
                      +.++++++.+. |++++.++   +++++|++.+. +|+..+++|+.||.|.|+--+.|-.+.
T Consensus       225 ~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL~  286 (544)
T TIGR02462       225 PSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILVN  286 (544)
T ss_pred             cCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHHh
Confidence            45678888875 89988653   36888988775 688888999999999998877766654

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.41  E-value=4.5e-06  Score=63.87  Aligned_cols=76  Identities=26%  Similarity=0.357  Sum_probs=57.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCcee
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRT  141 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  141 (506)
                      .|+|||||+.|+-+|..|++.|.+|+|+|+.+.....                                           
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~-------------------------------------------   37 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPG-------------------------------------------   37 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTT-------------------------------------------
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhh-------------------------------------------
Confidence            4899999999999999999999999999998642200                                           


Q ss_pred             eeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEE
Q 010623          142 QISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQY  200 (506)
Q Consensus       142 ~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v  200 (506)
                                        ....+...+.+.+++. ++++++++ +.++..+++++. |++
T Consensus        38 ------------------~~~~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~~~~-V~~   77 (80)
T PF00070_consen   38 ------------------FDPDAAKILEEYLRKR-GVEVHTNTKVKEIEKDGDGVE-VTL   77 (80)
T ss_dssp             ------------------SSHHHHHHHHHHHHHT-TEEEEESEEEEEEEEETTSEE-EEE
T ss_pred             ------------------cCHHHHHHHHHHHHHC-CCEEEeCCEEEEEEEeCCEEE-EEE
Confidence                              0112444556666666 89999996 999998887644 443

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.41  E-value=6.8e-06  Score=82.28  Aligned_cols=59  Identities=19%  Similarity=0.269  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCc-cc
Q 010623          163 RFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCF-SN  224 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~-S~  224 (506)
                      ++.+.|.+.+++. |+++..+ +|+++..+++++++|..  .++...+++||.+|.|+|+| |.
T Consensus       264 RL~~aL~~~~~~~-Gg~il~g~~V~~i~~~~~~v~~V~t--~~g~~~~l~AD~vVLAaGaw~S~  324 (419)
T TIGR03378       264 RLEEALKHRFEQL-GGVMLPGDRVLRAEFEGNRVTRIHT--RNHRDIPLRADHFVLASGSFFSN  324 (419)
T ss_pred             HHHHHHHHHHHHC-CCEEEECcEEEEEEeeCCeEEEEEe--cCCccceEECCEEEEccCCCcCH
Confidence            6777799999988 5566666 69999988887765543  34422357899999999999 74

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.39  E-value=3.6e-06  Score=87.43  Aligned_cols=34  Identities=47%  Similarity=0.610  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      .+|||+||||||+|+++|..|++.|.+|+|+|++
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~   35 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG   35 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            3599999999999999999999999999999984

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.37  E-value=3.4e-06  Score=85.81  Aligned_cols=36  Identities=36%  Similarity=0.448  Sum_probs=33.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +.+||++||||||+|..+|..+++.|.+|.++|+.+
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~   37 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE   37 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC
Confidence            357999999999999999999999999999999985

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.34  E-value=4.3e-06  Score=86.85  Aligned_cols=34  Identities=32%  Similarity=0.414  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEecC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKD-GRRVHVIERD   92 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~-G~~v~vvE~~   92 (506)
                      .+|||+||||||+|..+|..+++. |.+|+|+|+.
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~   36 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ   36 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence            369999999999999999999996 9999999984

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK09897 hypothetical protein; Provisional

Probab=98.31  E-value=1.6e-05  Score=82.92  Aligned_cols=34  Identities=21%  Similarity=0.310  Sum_probs=30.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDG--RRVHVIERDLS   94 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G--~~v~vvE~~~~   94 (506)
                      .+|+||||||+|+++|..|.+++  ++|+|+|++..
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~   37 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADE   37 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCC
Confidence            47999999999999999998865  58999999754

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=98.31  E-value=1.4e-05  Score=75.11  Aligned_cols=37  Identities=46%  Similarity=0.737  Sum_probs=34.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE   95 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~   95 (506)
                      .++||+|||+|.+||.+|..|+..|.+|+|+|+..+.
T Consensus         4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeq   40 (552)
T COG3573           4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQ   40 (552)
T ss_pred             ccccEEEECccHHHHHHHHHHHhcCceEEEEcccccc
Confidence            3689999999999999999999999999999998653

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=98.25  E-value=2e-05  Score=74.11  Aligned_cols=58  Identities=14%  Similarity=0.277  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCc
Q 010623          163 RFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCF  222 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~  222 (506)
                      ++.+.|....++.|++.+...+|.+.+..+++|+.+..  .++..+.++||..|.|+|.+
T Consensus       259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~t--rn~~diP~~a~~~VLAsGsf  316 (421)
T COG3075         259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYT--RNHADIPLRADFYVLASGSF  316 (421)
T ss_pred             hHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEe--cccccCCCChhHeeeecccc
Confidence            45566777778876655544479999999998876654  45555678899999999964

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.25  E-value=6.4e-06  Score=85.18  Aligned_cols=33  Identities=21%  Similarity=0.325  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDG--RRVHVIERDLS   94 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G--~~v~vvE~~~~   94 (506)
                      +|+|||||++|+++|..|++.|  .+|+|+|+++.
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~   36 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDI   36 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCc
Confidence            6999999999999999999975  58999999864

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.23  E-value=1.7e-05  Score=84.83  Aligned_cols=34  Identities=32%  Similarity=0.453  Sum_probs=32.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      .+|||+||||||+|..+|..++++|.+|+|+|++
T Consensus       115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~  148 (659)
T PTZ00153        115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD  148 (659)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            3799999999999999999999999999999975

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.23  E-value=1.3e-06  Score=91.06  Aligned_cols=54  Identities=26%  Similarity=0.296  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCC
Q 010623          163 RFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGC  221 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~  221 (506)
                      .+.+.|.+.+++. |++++.+ +|+++..++++  ++++.+.+|  ..+++|.||.+-..
T Consensus       225 al~~aL~~~~~~~-Gg~I~~~~~V~~I~v~~g~--g~~~~~~~g--~~~~ad~vv~~~~~  279 (487)
T COG1233         225 ALVDALAELAREH-GGEIRTGAEVSQILVEGGK--GVGVRTSDG--ENIEADAVVSNADP  279 (487)
T ss_pred             HHHHHHHHHHHHc-CCEEECCCceEEEEEeCCc--ceEEecccc--ceeccceeEecCch
Confidence            5778899999998 6778877 59999998887  456666777  34679999887766

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=1.4e-06  Score=82.12  Aligned_cols=115  Identities=23%  Similarity=0.252  Sum_probs=77.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD  137 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  137 (506)
                      +..|||+||||||+|.++|++.+|.|++.-|+-.+      ..|        +.|+.++++..+.-              
T Consensus       209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aer------fGG--------QvldT~~IENfIsv--------------  260 (520)
T COG3634         209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAER------FGG--------QVLDTMGIENFISV--------------  260 (520)
T ss_pred             cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhhh------hCC--------eeccccchhheecc--------------
Confidence            35699999999999999999999999987665332      111        12333444321100              


Q ss_pred             CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623          138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI  216 (506)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV  216 (506)
                              +           ...-.+|...|.+++++. .+++.+. +.++++..+....-.+++.++|..  ..++-+|
T Consensus       261 --------~-----------~teGpkl~~ale~Hv~~Y-~vDimn~qra~~l~~a~~~~~l~ev~l~nGav--LkaktvI  318 (520)
T COG3634         261 --------P-----------ETEGPKLAAALEAHVKQY-DVDVMNLQRASKLEPAAVEGGLIEVELANGAV--LKARTVI  318 (520)
T ss_pred             --------c-----------cccchHHHHHHHHHHhhc-CchhhhhhhhhcceecCCCCccEEEEecCCce--eccceEE
Confidence                    0           012336888899999988 6777766 477777642211136677888975  5599999


Q ss_pred             eecCCc
Q 010623          217 VCDGCF  222 (506)
Q Consensus       217 ~AdG~~  222 (506)
                      .++|++
T Consensus       319 lstGAr  324 (520)
T COG3634         319 LATGAR  324 (520)
T ss_pred             EecCcc
Confidence            999985

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.22  E-value=8.8e-06  Score=83.84  Aligned_cols=33  Identities=30%  Similarity=0.466  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCC
Q 010623           62 DVIVVGAGVAGAALANTLAKD--GRRVHVIERDLS   94 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~~   94 (506)
                      +|+|||||++|+.+|..|++.  +.+|+|+|+++.
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~   37 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRD   37 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCC
Confidence            799999999999999999987  689999999864

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.21  E-value=2.5e-05  Score=81.23  Aligned_cols=37  Identities=43%  Similarity=0.548  Sum_probs=33.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE   95 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~   95 (506)
                      ...+|+||||||+|+++|..|++.|++|+|+|+.+..
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~  178 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRI  178 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            3579999999999999999999999999999998654

>PRK02106 choline dehydrogenase; Validated

Probab=98.21  E-value=3.2e-05  Score=82.28  Aligned_cols=59  Identities=20%  Similarity=0.277  Sum_probs=44.8

Q ss_pred             HHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccc
Q 010623          167 RLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNL  225 (506)
Q Consensus       167 ~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~v  225 (506)
                      .....+.+.++.++..+. |+++..+++++++|++.+.++....+.++.||.|.|+...-
T Consensus       205 ~~l~~a~~~~nl~i~~~a~V~rI~~~~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP  264 (560)
T PRK02106        205 AYLDPALKRPNLTIVTHALTDRILFEGKRAVGVEYERGGGRETARARREVILSAGAINSP  264 (560)
T ss_pred             HhhccccCCCCcEEEcCCEEEEEEEeCCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCH
Confidence            333445556788888885 99999888888999987766655557899999999987643

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.21  E-value=2.7e-05  Score=80.70  Aligned_cols=37  Identities=35%  Similarity=0.466  Sum_probs=33.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE   95 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~   95 (506)
                      ...+|+||||||+|+++|..|++.|++|+|+|+.+..
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~  175 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA  175 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence            3579999999999999999999999999999998653

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=98.19  E-value=4.6e-06  Score=79.88  Aligned_cols=38  Identities=29%  Similarity=0.346  Sum_probs=34.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP   96 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~   96 (506)
                      .++||+|||+||.|-.+|+..++.|++.+.+|++....
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LG   75 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLG   75 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccC
Confidence            36999999999999999999999999999999986543

>TIGR01810 betA choline dehydrogenase

Probab=98.19  E-value=2.7e-05  Score=82.36  Aligned_cols=59  Identities=24%  Similarity=0.276  Sum_probs=43.4

Q ss_pred             HHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCC-cc
Q 010623          165 VQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGC-FS  223 (506)
Q Consensus       165 ~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~-~S  223 (506)
                      ...+...+.+.++.+++.+. |+++..+++++++|++...++....+.++.||.|.|+ +|
T Consensus       196 ~~~~l~~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~S  256 (532)
T TIGR01810       196 ARAYLHPAMKRPNLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINS  256 (532)
T ss_pred             HHHHhhhhccCCCeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCC
Confidence            33444555556789999885 9999988888999988765433334579999999999 44

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.18  E-value=1.5e-05  Score=78.81  Aligned_cols=153  Identities=22%  Similarity=0.192  Sum_probs=72.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC-CcEEEEecCCCCCCcccccccccchH--HHHHHhCchhHHhhcccceecceEEE-
Q 010623           60 DADVIVVGAGVAGAALANTLAKDG-RRVHVIERDLSEPDRIVGELLQPGGY--LKLIELGLEDCVEQIDAQRVFGYALF-  135 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G-~~v~vvE~~~~~~~~~~g~~l~~~~~--~~l~~~g~~~~~~~~~~~~~~~~~~~-  135 (506)
                      .+|+++||.||++|++|+.|...+ .++..+||.+...-++ |..+....+  ..|+.+     +.-.  .+...+.+. 
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~-gmll~~~~~q~~fl~Dl-----vt~~--~P~s~~sfln   73 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHP-GMLLPGARMQVSFLKDL-----VTLR--DPTSPFSFLN   73 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTG-GG--SS-B-SS-TTSSS-----STTT---TTSTTSHHH
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCC-ccCCCCCcccccccccc-----CcCc--CCCCcccHHH
Confidence            389999999999999999999887 8999999987543332 111110000  011100     0000  000000000 


Q ss_pred             ---ECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCC---eEEEEEEEeCCccEE
Q 010623          136 ---KDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKG---TIKGVQYKTKAGEEL  208 (506)
Q Consensus       136 ---~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~---~v~~v~v~~~~G~~~  208 (506)
                         ..+..  ..|-      ........|.++.+.|.-.+.+.+. .+.++ +|+++...++   ....|+..+.+|+..
T Consensus        74 YL~~~~rl--~~f~------~~~~~~p~R~ef~dYl~Wva~~~~~-~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~  144 (341)
T PF13434_consen   74 YLHEHGRL--YEFY------NRGYFFPSRREFNDYLRWVAEQLDN-QVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGE  144 (341)
T ss_dssp             HHHHTT-H--HHHH------HH--SS-BHHHHHHHHHHHHCCGTT-TEEESEEEEEEEEEEETTEEEEEEEEEETTS-EE
T ss_pred             HHHHcCCh--hhhh------hcCCCCCCHHHHHHHHHHHHHhCCC-ceEECCEEEEEEEecCCCccEEEEEEeecCCCee
Confidence               00000  0000      0000124677888888887777754 24555 5998886543   233355545677777


Q ss_pred             EEEcCeEEeecCCcccchhhc
Q 010623          209 TAYAPLTIVCDGCFSNLRRSL  229 (506)
Q Consensus       209 ~i~a~~vV~AdG~~S~vR~~l  229 (506)
                      ++.|+.||.|+|..-.+.+.+
T Consensus       145 ~~~ar~vVla~G~~P~iP~~~  165 (341)
T PF13434_consen  145 TYRARNVVLATGGQPRIPEWF  165 (341)
T ss_dssp             EEEESEEEE----EE---GGG
T ss_pred             EEEeCeEEECcCCCCCCCcch
Confidence            889999999999554444443

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.18  E-value=5.5e-06  Score=92.21  Aligned_cols=34  Identities=35%  Similarity=0.375  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..+|+|||||||||++|..|++.|++|+|+|+.+
T Consensus       306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~  339 (944)
T PRK12779        306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH  339 (944)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Confidence            5789999999999999999999999999999985

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=98.16  E-value=0.00011  Score=68.32  Aligned_cols=217  Identities=17%  Similarity=0.147  Sum_probs=107.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC-------CcEEEEecCCCCCCccc--ccccccc-----hHHHHHHhCc-----hhH
Q 010623           60 DADVIVVGAGVAGAALANTLAKDG-------RRVHVIERDLSEPDRIV--GELLQPG-----GYLKLIELGL-----EDC  120 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G-------~~v~vvE~~~~~~~~~~--g~~l~~~-----~~~~l~~~g~-----~~~  120 (506)
                      ..+|+|||+|..||++|+.+.+.+       .+|+|++-++.+...+.  +....+.     +.+.-++++-     +..
T Consensus         3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~s~~~AGl~~p~~~~~~~~~~~~~w~k~tf~~l~~   82 (342)
T KOG3923|consen    3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTTSDVAAGLFRPDLSDGTPQEINRQWGKDTFNYLAH   82 (342)
T ss_pred             CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccccccccccceeecccCCCCcHHHHHHHHHHHHHHHHH
Confidence            479999999999999998888854       58999987765443222  1122222     2333333332     122


Q ss_pred             Hhhccccee------cceEEEECCcee-------eeecCCc-----------C---CCCCcccccccchHHHHHHHHHHH
Q 010623          121 VEQIDAQRV------FGYALFKDGNRT-------QISYPLE-----------K---FHSDVAGRGFHNGRFVQRLREKAA  173 (506)
Q Consensus       121 ~~~~~~~~~------~~~~~~~~~~~~-------~~~~~~~-----------~---~~~~~~~~~i~~~~l~~~L~~~~~  173 (506)
                      +........      .++..+......       .+-+.+.           .   +......+..+-..+...|.+.+.
T Consensus        83 l~rs~~a~~aGV~l~sg~~ls~~e~~~~~~~~w~diV~~fr~l~e~EL~~f~~~~~~G~~~Tt~~sE~~~ylpyl~k~l~  162 (342)
T KOG3923|consen   83 LARSEEAGEAGVCLVSGHILSDSESLDDQQRSWGDIVYGFRDLTERELLGFPDYSTYGIHFTTYLSEGPKYLPYLKKRLT  162 (342)
T ss_pred             HhccccccccceEEeeeeeeccCCCchhhhhhHHhhhhhhhcCCHHHhcCCCCccccceeEEEeeccchhhhHHHHHHHH
Confidence            222111122      222222210000       0000000           0   011112234556678899999999


Q ss_pred             cCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccchhhccCCCCCCccceeeEEEeccCCCCC
Q 010623          174 SLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFE  253 (506)
Q Consensus       174 ~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~  253 (506)
                      +. |+++...+|.++.+-.           +     -.+|+||+|+|-+|..  ..+.+.   -+..+|.+..   +..|
T Consensus       163 e~-Gvef~~r~v~~l~E~~-----------~-----~~~DVivNCtGL~a~~--L~gDd~---~yPiRGqVl~---V~Ap  217 (342)
T KOG3923|consen  163 EN-GVEFVQRRVESLEEVA-----------R-----PEYDVIVNCTGLGAGK--LAGDDD---LYPIRGQVLK---VDAP  217 (342)
T ss_pred             hc-CcEEEEeeeccHHHhc-----------c-----CCCcEEEECCcccccc--ccCCcc---eeeccceEEE---eeCC
Confidence            98 6666666666653221           1     1289999999998742  222221   2334555543   2333


Q ss_pred             CeeEEEecCCCcEEEEecCCCeEEEEEEec-CCCCCCCCchHHHHHHHHh
Q 010623          254 NHGHVVLADPSPILFYPISSNEVRCLVDIP-GQKVPSISNGEMANYLKTV  302 (506)
Q Consensus       254 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  302 (506)
                      ..-++.+.+....+.+|..+.- .+.-... ..-..++..++..+.+.+.
T Consensus       218 Wvkhf~~~D~~~ty~iP~~~~V-~lGg~~Q~g~w~~ei~~~D~~dIl~rc  266 (342)
T KOG3923|consen  218 WVKHFIYRDFSRTYIIPGTESV-TLGGTKQEGNWNLEITDEDRRDILERC  266 (342)
T ss_pred             ceeEEEEecCCccEEecCCceE-EEccccccCcccCcCChhhHHHHHHHH
Confidence            3444555444434555554431 1111111 2222344555655555554

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.15  E-value=1.8e-05  Score=81.19  Aligned_cols=109  Identities=20%  Similarity=0.209  Sum_probs=69.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      +.+|||||||.+|+.+|..|.+.+++|+|||+++...       +.+    .+.....                    + 
T Consensus        10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~-------~~~----~l~~~~~--------------------g-   57 (424)
T PTZ00318         10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHML-------FTP----LLPQTTT--------------------G-   57 (424)
T ss_pred             CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcc-------hhh----hHHHhcc--------------------c-
Confidence            4699999999999999999988789999999875311       111    0100000                    0 


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEe--------CCccEEEEE
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKT--------KAGEELTAY  211 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~--------~~G~~~~i~  211 (506)
                                        ......+..-+.+.+... ++.+..++|++++.++..+   ++..        .+|.  ++.
T Consensus        58 ------------------~~~~~~~~~~~~~~~~~~-~~~~i~~~V~~Id~~~~~v---~~~~~~~~~~~~~~g~--~i~  113 (424)
T PTZ00318         58 ------------------TLEFRSICEPVRPALAKL-PNRYLRAVVYDVDFEEKRV---KCGVVSKSNNANVNTF--SVP  113 (424)
T ss_pred             ------------------CCChHHhHHHHHHHhccC-CeEEEEEEEEEEEcCCCEE---EEecccccccccCCce--Eec
Confidence                              001112222344445444 6888888999998777643   3311        2343  477


Q ss_pred             cCeEEeecCCccc
Q 010623          212 APLTIVCDGCFSN  224 (506)
Q Consensus       212 a~~vV~AdG~~S~  224 (506)
                      +|++|.|+|....
T Consensus       114 yD~LViAtGs~~~  126 (424)
T PTZ00318        114 YDKLVVAHGARPN  126 (424)
T ss_pred             CCEEEECCCcccC
Confidence            9999999998753

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=98.13  E-value=9.6e-06  Score=79.73  Aligned_cols=145  Identities=24%  Similarity=0.375  Sum_probs=84.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC-CCcccccc---cccc-hHHHHHHh-CchhHHhhcccceecc
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE-PDRIVGEL---LQPG-GYLKLIEL-GLEDCVEQIDAQRVFG  131 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~-~~~~~g~~---l~~~-~~~~l~~~-g~~~~~~~~~~~~~~~  131 (506)
                      +..|||+|||||-||+-+|.+.+|.|.+.+++-.+-.. ..-+|.-.   +..+ -++..+.+ |+...+-..   .  +
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~---s--~  100 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQ---S--G  100 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhhhh---h--h
Confidence            45699999999999999999999999999999886421 11111100   1100 01111111 111111110   0  0


Q ss_pred             eEEEECCceeeeecCCcCCCCCcc----cccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCe-----EEEEEEEe
Q 010623          132 YALFKDGNRTQISYPLEKFHSDVA----GRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGT-----IKGVQYKT  202 (506)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~-----v~~v~v~~  202 (506)
                                 +.|.+.+....|.    -..++|..+...+.+.+...++..++.+.|.++.-.+++     +.||.  .
T Consensus       101 -----------vq~k~LNrs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~~V~dliv~~~~~~~~~~~gV~--l  167 (679)
T KOG2311|consen  101 -----------VQYKVLNRSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREGAVADLIVEDPDDGHCVVSGVV--L  167 (679)
T ss_pred             -----------hhHHHhhccCCCcccChHHhhhHHHHHHHHHHHhccCCcchhhhhhhhheeeccCCCCceEEEEEE--E
Confidence                       0111111111111    124677777777778888778899999998887643322     44554  4


Q ss_pred             CCccEEEEEcCeEEeecCCc
Q 010623          203 KAGEELTAYAPLTIVCDGCF  222 (506)
Q Consensus       203 ~~G~~~~i~a~~vV~AdG~~  222 (506)
                      .||+  .+.|+-||..+|-+
T Consensus       168 ~dgt--~v~a~~VilTTGTF  185 (679)
T KOG2311|consen  168 VDGT--VVYAESVILTTGTF  185 (679)
T ss_pred             ecCc--EeccceEEEeeccc
Confidence            5786  47799999999976

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=98.13  E-value=5e-06  Score=77.59  Aligned_cols=165  Identities=19%  Similarity=0.209  Sum_probs=89.6

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCCCCcc---------cccccccchHHH---------H----
Q 010623           57 CPFDADVIVVGAGVAGAALANTLAKD--GRRVHVIERDLSEPDRI---------VGELLQPGGYLK---------L----  112 (506)
Q Consensus        57 ~~~~~dVvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~~~~~~~---------~g~~l~~~~~~~---------l----  112 (506)
                      ...++|.+|||||++|++.|.+|.-+  +.+|.|+|+..+...+.         .|..+.|++++.         +    
T Consensus        45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc  124 (453)
T KOG2665|consen   45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYC  124 (453)
T ss_pred             ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHh
Confidence            34579999999999999999998866  89999999986543221         233445555432         1    


Q ss_pred             HHhCch-------------------hHHhhccc-ceecceEEEECCceeeeecCCc---CCCCCcccccccchHHHHHHH
Q 010623          113 IELGLE-------------------DCVEQIDA-QRVFGYALFKDGNRTQISYPLE---KFHSDVAGRGFHNGRFVQRLR  169 (506)
Q Consensus       113 ~~~g~~-------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~l~~~L~  169 (506)
                      ++-++.                   +.+...+. ....+.+....-+..... |.-   ..-..|...+++...+...+.
T Consensus       125 ~e~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~E-P~crgvkAl~sPhtGIvD~~~v~ls~~  203 (453)
T KOG2665|consen  125 DEKKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEME-PYCRGVKALLSPHTGIVDWGSVTLSFG  203 (453)
T ss_pred             hhcCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcC-hhhhhhhhhcCCCcceeehHHHHHHHH
Confidence            111110                   00000000 011111111111000000 000   000123344567777777788


Q ss_pred             HHHHcCCCEEEEeceEEEEEeeCCeE--EEEEEEeCCccEEEEEcCeEEeecCCccc
Q 010623          170 EKAASLPNVRLEQGTVTSLLEEKGTI--KGVQYKTKAGEELTAYAPLTIVCDGCFSN  224 (506)
Q Consensus       170 ~~~~~~~~v~i~~~~v~~~~~~~~~v--~~v~v~~~~G~~~~i~a~~vV~AdG~~S~  224 (506)
                      +.....++-...+-++..+.+..+..  .-+++.+..|+  +++++++|.|.|-.|-
T Consensus       204 edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~e--e~r~~~~vtc~gl~sd  258 (453)
T KOG2665|consen  204 EDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGE--EKRTKNVVTCAGLQSD  258 (453)
T ss_pred             HHHHHhcccccccceeccchhccCCCCCCceEEecCccc--eeEEeEEEEeccccHh
Confidence            88887755444333688887765421  12444444454  5779999999998874

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.11  E-value=4e-05  Score=79.68  Aligned_cols=102  Identities=25%  Similarity=0.314  Sum_probs=73.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||++|+-+|..|++.|.+|+++|+.+...+         .         .                      
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~---------~---------~----------------------  209 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP---------G---------E----------------------  209 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC---------C---------C----------------------
Confidence            35899999999999999999999999999999852100         0         0                      


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                           ...+...+.+.+++. +++++.++ ++++..++++   +.+...+|+..++.+|.||.|
T Consensus       210 ---------------------~~~~~~~~~~~l~~~-gi~i~~~~~v~~i~~~~~~---v~v~~~~g~~~~i~~D~vi~a  264 (461)
T TIGR01350       210 ---------------------DAEVSKVVAKALKKK-GVKILTNTKVTAVEKNDDQ---VVYENKGGETETLTGEKVLVA  264 (461)
T ss_pred             ---------------------CHHHHHHHHHHHHHc-CCEEEeCCEEEEEEEeCCE---EEEEEeCCcEEEEEeCEEEEe
Confidence                                 012333455566666 78888884 8888776664   334455664445789999999


Q ss_pred             cCCcccch
Q 010623          219 DGCFSNLR  226 (506)
Q Consensus       219 dG~~S~vR  226 (506)
                      .|....+.
T Consensus       265 ~G~~p~~~  272 (461)
T TIGR01350       265 VGRKPNTE  272 (461)
T ss_pred             cCCcccCC
Confidence            99887654

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.08  E-value=5.8e-05  Score=76.94  Aligned_cols=102  Identities=25%  Similarity=0.308  Sum_probs=75.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG  138 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (506)
                      .+-.++|||||+.|+-.|..+++.|.+|+|+|+.+..-+                  +                      
T Consensus       172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp------------------~----------------------  211 (454)
T COG1249         172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP------------------G----------------------  211 (454)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC------------------c----------------------
Confidence            456799999999999999999999999999999863211                  0                      


Q ss_pred             ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEe
Q 010623          139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV  217 (506)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~  217 (506)
                                           ...++.+.+.+.+++ +++.++.++ ++.++..+++   +.+..++|+..++++|.|+.
T Consensus       212 ---------------------~D~ei~~~~~~~l~~-~gv~i~~~~~v~~~~~~~~~---v~v~~~~g~~~~~~ad~vLv  266 (454)
T COG1249         212 ---------------------EDPEISKELTKQLEK-GGVKILLNTKVTAVEKKDDG---VLVTLEDGEGGTIEADAVLV  266 (454)
T ss_pred             ---------------------CCHHHHHHHHHHHHh-CCeEEEccceEEEEEecCCe---EEEEEecCCCCEEEeeEEEE
Confidence                                 011355566677777 589898886 7777777664   44445555433577999999


Q ss_pred             ecCCcccc
Q 010623          218 CDGCFSNL  225 (506)
Q Consensus       218 AdG~~S~v  225 (506)
                      |.|..-++
T Consensus       267 AiGR~Pn~  274 (454)
T COG1249         267 AIGRKPNT  274 (454)
T ss_pred             ccCCccCC
Confidence            99976554

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=98.06  E-value=1.1e-05  Score=81.35  Aligned_cols=61  Identities=30%  Similarity=0.370  Sum_probs=47.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCCccc-----c-------cc--cc-cchHHHHHHhCchhHHh
Q 010623           62 DVIVVGAGVAGAALANTLAKDG--RRVHVIERDLSEPDRIV-----G-------EL--LQ-PGGYLKLIELGLEDCVE  122 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G--~~v~vvE~~~~~~~~~~-----g-------~~--l~-~~~~~~l~~~g~~~~~~  122 (506)
                      .|+|||||++||++|+.|++++  ++++|+|+++.......     |       +.  .. +..++.++++|+.+.+.
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~   79 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGLEDKLL   79 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCcHHhhc
Confidence            6899999999999999999999  99999999875443111     0       11  11 44567788999998886

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.05  E-value=7.5e-05  Score=77.68  Aligned_cols=103  Identities=19%  Similarity=0.272  Sum_probs=72.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||||+.|+-+|..|++.|.+|+|+|+.+...+.                  .                       
T Consensus       173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~------------------~-----------------------  211 (466)
T PRK07818        173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN------------------E-----------------------  211 (466)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc------------------c-----------------------
Confidence            58999999999999999999999999999986421100                  0                       


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD  219 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad  219 (506)
                                          ..++...+.+.+++. +++++.++ |+++..+++.+. +.+...+|+..++.+|.||.|.
T Consensus       212 --------------------d~~~~~~l~~~l~~~-gV~i~~~~~v~~i~~~~~~~~-v~~~~~~g~~~~i~~D~vi~a~  269 (466)
T PRK07818        212 --------------------DAEVSKEIAKQYKKL-GVKILTGTKVESIDDNGSKVT-VTVSKKDGKAQELEADKVLQAI  269 (466)
T ss_pred             --------------------CHHHHHHHHHHHHHC-CCEEEECCEEEEEEEeCCeEE-EEEEecCCCeEEEEeCEEEECc
Confidence                                011333455556666 78888874 889876655332 4443346765568899999999


Q ss_pred             CCcccch
Q 010623          220 GCFSNLR  226 (506)
Q Consensus       220 G~~S~vR  226 (506)
                      |....+.
T Consensus       270 G~~pn~~  276 (466)
T PRK07818        270 GFAPRVE  276 (466)
T ss_pred             CcccCCC
Confidence            9877653

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.04  E-value=5.7e-06  Score=85.37  Aligned_cols=39  Identities=36%  Similarity=0.383  Sum_probs=35.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD   97 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~   97 (506)
                      ++.+|+|||||+|||+||..|.+.|++|+|+|.++....
T Consensus        14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG   52 (501)
T KOG0029|consen   14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG   52 (501)
T ss_pred             CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence            468999999999999999999999999999999876554

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.04  E-value=3e-05  Score=78.86  Aligned_cols=35  Identities=29%  Similarity=0.529  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEecCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR--RVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~~   94 (506)
                      +.+|+|||||++|+++|..|+++|.  +|+|+++.+.
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~   39 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERH   39 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence            3589999999999999999999986  7999998854

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=98.04  E-value=7.7e-05  Score=79.42  Aligned_cols=36  Identities=31%  Similarity=0.407  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE   95 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~   95 (506)
                      .-+|+||||||+||++|..|++.|++|+|+|+.+..
T Consensus       137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~  172 (564)
T PRK12771        137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKL  172 (564)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            468999999999999999999999999999998653

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.03  E-value=1.8e-05  Score=79.57  Aligned_cols=105  Identities=16%  Similarity=0.146  Sum_probs=65.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHC---CCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623           62 DVIVVGAGVAGAALANTLAKD---GRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG  138 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~---G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (506)
                      +|+|||||++|+.+|..|.++   +.+|+|+|+++...       +.+..-..+  .|.                     
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~-------~~~~~~~~~--~g~---------------------   50 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP-------YSGMLPGMI--AGH---------------------   50 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc-------ccchhhHHH--hee---------------------
Confidence            589999999999999999643   68999999885321       111000000  000                     


Q ss_pred             ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                          +...++...+.+.+.+. ++++..++|+++..+...   |.  ..+|++  +++|+||.|
T Consensus        51 --------------------~~~~~~~~~~~~~~~~~-gv~~~~~~v~~id~~~~~---V~--~~~g~~--~~yD~LviA  102 (364)
T TIGR03169        51 --------------------YSLDEIRIDLRRLARQA-GARFVIAEATGIDPDRRK---VL--LANRPP--LSYDVLSLD  102 (364)
T ss_pred             --------------------CCHHHhcccHHHHHHhc-CCEEEEEEEEEEecccCE---EE--ECCCCc--ccccEEEEc
Confidence                                00001111223334444 788888889998876653   33  456753  679999999


Q ss_pred             cCCccc
Q 010623          219 DGCFSN  224 (506)
Q Consensus       219 dG~~S~  224 (506)
                      +|+...
T Consensus       103 tG~~~~  108 (364)
T TIGR03169       103 VGSTTP  108 (364)
T ss_pred             cCCCCC
Confidence            998764

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=3e-05  Score=68.90  Aligned_cols=119  Identities=18%  Similarity=0.290  Sum_probs=78.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD  137 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  137 (506)
                      ....+|+|||.||++-++|+.+++..++.+|+|-....       .+.|++..                           
T Consensus         6 ~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~-------~i~pGGQL---------------------------   51 (322)
T KOG0404|consen    6 THNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMAN-------GIAPGGQL---------------------------   51 (322)
T ss_pred             eeeeeEEEEccCchHHHHHHHHhhcccCceEEeeeecc-------CcCCCcee---------------------------
Confidence            34569999999999999999999999999999976321       12222110                           


Q ss_pred             CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEe
Q 010623          138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV  217 (506)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~  217 (506)
                          ......++++..|.  .+.-.+|.+.+++...+. |.++...+|.++.....-   .++.++.+   .+.||.||.
T Consensus        52 ----tTTT~veNfPGFPd--gi~G~~l~d~mrkqs~r~-Gt~i~tEtVskv~~sskp---F~l~td~~---~v~~~avI~  118 (322)
T KOG0404|consen   52 ----TTTTDVENFPGFPD--GITGPELMDKMRKQSERF-GTEIITETVSKVDLSSKP---FKLWTDAR---PVTADAVIL  118 (322)
T ss_pred             ----eeeeccccCCCCCc--ccccHHHHHHHHHHHHhh-cceeeeeehhhccccCCC---eEEEecCC---ceeeeeEEE
Confidence                00001111111111  234557899999999998 778888888888766552   33333333   366999999


Q ss_pred             ecCCcc
Q 010623          218 CDGCFS  223 (506)
Q Consensus       218 AdG~~S  223 (506)
                      |+|+..
T Consensus       119 atGAsA  124 (322)
T KOG0404|consen  119 ATGASA  124 (322)
T ss_pred             ecccce
Confidence            999743

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.01  E-value=7e-05  Score=75.67  Aligned_cols=98  Identities=22%  Similarity=0.340  Sum_probs=70.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||||++|+-+|..|++.|.+|+++|+.+.....                  .                       
T Consensus       142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~------------------~-----------------------  180 (377)
T PRK04965        142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS------------------L-----------------------  180 (377)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch------------------h-----------------------
Confidence            47999999999999999999999999999987531100                  0                       


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD  219 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad  219 (506)
                                         ....+...+.+.+++. ++++..+ +++++..+++.   +.+...+|+  ++.+|.||.|+
T Consensus       181 -------------------~~~~~~~~l~~~l~~~-gV~i~~~~~v~~i~~~~~~---~~v~~~~g~--~i~~D~vI~a~  235 (377)
T PRK04965        181 -------------------MPPEVSSRLQHRLTEM-GVHLLLKSQLQGLEKTDSG---IRATLDSGR--SIEVDAVIAAA  235 (377)
T ss_pred             -------------------CCHHHHHHHHHHHHhC-CCEEEECCeEEEEEccCCE---EEEEEcCCc--EEECCEEEECc
Confidence                               0001233455556665 7888876 58888776553   344566776  46799999999


Q ss_pred             CCccc
Q 010623          220 GCFSN  224 (506)
Q Consensus       220 G~~S~  224 (506)
                      |..+.
T Consensus       236 G~~p~  240 (377)
T PRK04965        236 GLRPN  240 (377)
T ss_pred             CCCcc
Confidence            98764

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.99  E-value=0.00012  Score=79.13  Aligned_cols=36  Identities=28%  Similarity=0.472  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE   95 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~   95 (506)
                      ..+|+||||||+|+++|..|++.|++|+|+|+.+..
T Consensus       193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~  228 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA  228 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            469999999999999999999999999999998654

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.98  E-value=0.00025  Score=73.72  Aligned_cols=101  Identities=18%  Similarity=0.232  Sum_probs=71.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||||++|+-+|..|++.|.+|+++|+.+...+.                  .                       
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~-----------------------  211 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG------------------E-----------------------  211 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc------------------C-----------------------
Confidence            57999999999999999999999999999997532100                  0                       


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCC-ccEEEEEcCeEEee
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKA-GEELTAYAPLTIVC  218 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~-G~~~~i~a~~vV~A  218 (506)
                                          ...+...+.+.+++. ++.++.+ +++++..+++.   +.+...+ |+..++.+|.||.|
T Consensus       212 --------------------~~~~~~~l~~~l~~~-gV~i~~~~~V~~i~~~~~~---v~v~~~~gg~~~~i~~D~vi~a  267 (462)
T PRK06416        212 --------------------DKEISKLAERALKKR-GIKIKTGAKAKKVEQTDDG---VTVTLEDGGKEETLEADYVLVA  267 (462)
T ss_pred             --------------------CHHHHHHHHHHHHHc-CCEEEeCCEEEEEEEeCCE---EEEEEEeCCeeEEEEeCEEEEe
Confidence                                001233445555555 7888888 49999877664   3343333 44446889999999


Q ss_pred             cCCcccch
Q 010623          219 DGCFSNLR  226 (506)
Q Consensus       219 dG~~S~vR  226 (506)
                      .|......
T Consensus       268 ~G~~p~~~  275 (462)
T PRK06416        268 VGRRPNTE  275 (462)
T ss_pred             eCCccCCC
Confidence            99876553

>PLN02576 protoporphyrinogen oxidase

Probab=97.97  E-value=1e-05  Score=85.02  Aligned_cols=40  Identities=43%  Similarity=0.429  Sum_probs=35.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCC
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKD-GRRVHVIERDLSEPD   97 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~-G~~v~vvE~~~~~~~   97 (506)
                      ..++||+|||||++||++|+.|++. |++|+|+|+++....
T Consensus        10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG   50 (496)
T PLN02576         10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG   50 (496)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence            3457999999999999999999999 999999999976554

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=97.97  E-value=7.9e-06  Score=82.26  Aligned_cols=38  Identities=34%  Similarity=0.390  Sum_probs=34.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDR   98 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~   98 (506)
                      .+|+|+|||+|||+||+.|+++|++|+|+|+++....+
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk   38 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGK   38 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCce
Confidence            37999999999999999999999999999999876543

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.97  E-value=0.00012  Score=76.26  Aligned_cols=103  Identities=19%  Similarity=0.252  Sum_probs=73.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||||..|+-+|..|++.|.+|+|+|+.+....         .         .                       
T Consensus       184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~---------~---------~-----------------------  222 (475)
T PRK06327        184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA---------A---------A-----------------------  222 (475)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC---------c---------C-----------------------
Confidence            5899999999999999999999999999998753110         0         0                       


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD  219 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad  219 (506)
                                          ..++...+.+.+++. ++.++.+ +|+++..+++.+. +.+.+.+|++.++.+|.||.|.
T Consensus       223 --------------------d~~~~~~~~~~l~~~-gi~i~~~~~v~~i~~~~~~v~-v~~~~~~g~~~~i~~D~vl~a~  280 (475)
T PRK06327        223 --------------------DEQVAKEAAKAFTKQ-GLDIHLGVKIGEIKTGGKGVS-VAYTDADGEAQTLEVDKLIVSI  280 (475)
T ss_pred             --------------------CHHHHHHHHHHHHHc-CcEEEeCcEEEEEEEcCCEEE-EEEEeCCCceeEEEcCEEEEcc
Confidence                                011333444455555 7888887 5999987666442 4444445655568899999999


Q ss_pred             CCcccch
Q 010623          220 GCFSNLR  226 (506)
Q Consensus       220 G~~S~vR  226 (506)
                      |....+.
T Consensus       281 G~~p~~~  287 (475)
T PRK06327        281 GRVPNTD  287 (475)
T ss_pred             CCccCCC
Confidence            9877653

>PRK07846 mycothione reductase; Reviewed

Probab=97.97  E-value=3.3e-05  Score=79.81  Aligned_cols=32  Identities=22%  Similarity=0.530  Sum_probs=27.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +|||+||||||+|.++|..  +.|.+|+|+|+..
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~   32 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGT   32 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC
Confidence            3899999999999988865  4699999999863

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.95  E-value=0.00013  Score=75.71  Aligned_cols=100  Identities=22%  Similarity=0.337  Sum_probs=71.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+....                  +.                       
T Consensus       171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~------------------~~-----------------------  209 (458)
T PRK06912        171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP------------------GE-----------------------  209 (458)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc------------------cc-----------------------
Confidence            5799999999999999999999999999998753100                  00                       


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD  219 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad  219 (506)
                                          ..++.+.+.+.+++. +++++.++ ++++..++..   +.+.. +|+..++.+|.||.|+
T Consensus       210 --------------------d~e~~~~l~~~L~~~-GI~i~~~~~V~~i~~~~~~---v~~~~-~g~~~~i~~D~vivA~  264 (458)
T PRK06912        210 --------------------DEDIAHILREKLEND-GVKIFTGAALKGLNSYKKQ---ALFEY-EGSIQEVNAEFVLVSV  264 (458)
T ss_pred             --------------------cHHHHHHHHHHHHHC-CCEEEECCEEEEEEEcCCE---EEEEE-CCceEEEEeCEEEEec
Confidence                                012334455566665 78888875 8888765542   33433 4544468899999999


Q ss_pred             CCcccch
Q 010623          220 GCFSNLR  226 (506)
Q Consensus       220 G~~S~vR  226 (506)
                      |....+.
T Consensus       265 G~~p~~~  271 (458)
T PRK06912        265 GRKPRVQ  271 (458)
T ss_pred             CCccCCC
Confidence            9887653

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.94  E-value=0.00012  Score=76.25  Aligned_cols=102  Identities=26%  Similarity=0.292  Sum_probs=71.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+...+         .         .                      
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~---------~---------~----------------------  219 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILP---------T---------E----------------------  219 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCC---------c---------C----------------------
Confidence            35899999999999999999999999999999853110         0         0                      


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEee-CCeEEEEEEEeCCccEEEEEcCeEEe
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEE-KGTIKGVQYKTKAGEELTAYAPLTIV  217 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~-~~~v~~v~v~~~~G~~~~i~a~~vV~  217 (506)
                                           ...+...+.+.+++. +++++.++ ++++..+ ++++.  .+...+|+..++.+|.||.
T Consensus       220 ---------------------~~~~~~~l~~~l~~~-gI~i~~~~~v~~i~~~~~~~~~--~~~~~~g~~~~i~~D~vi~  275 (472)
T PRK05976        220 ---------------------DAELSKEVARLLKKL-GVRVVTGAKVLGLTLKKDGGVL--IVAEHNGEEKTLEADKVLV  275 (472)
T ss_pred             ---------------------CHHHHHHHHHHHHhc-CCEEEeCcEEEEEEEecCCCEE--EEEEeCCceEEEEeCEEEE
Confidence                                 011333445555565 78888885 8888752 34332  2233566655688999999


Q ss_pred             ecCCcccc
Q 010623          218 CDGCFSNL  225 (506)
Q Consensus       218 AdG~~S~v  225 (506)
                      |.|....+
T Consensus       276 a~G~~p~~  283 (472)
T PRK05976        276 SVGRRPNT  283 (472)
T ss_pred             eeCCccCC
Confidence            99987655

>TIGR02730 carot_isom carotene isomerase

Probab=97.94  E-value=1e-05  Score=84.70  Aligned_cols=63  Identities=19%  Similarity=0.269  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccchhhcc
Q 010623          163 RFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLC  230 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~~l~  230 (506)
                      .+.+.|.+.+++. |++++.+ +|+++..+++++.+|+  ..+|++  ++||.||.|.|.+..+++.+.
T Consensus       230 ~l~~~L~~~~~~~-G~~i~~~~~V~~I~~~~~~~~gv~--~~~g~~--~~ad~vV~a~~~~~~~~~Ll~  293 (493)
T TIGR02730       230 QIAESLVKGLEKH-GGQIRYRARVTKIILENGKAVGVK--LADGEK--IYAKRIVSNATRWDTFGKLLK  293 (493)
T ss_pred             HHHHHHHHHHHHC-CCEEEeCCeeeEEEecCCcEEEEE--eCCCCE--EEcCEEEECCChHHHHHHhCC
Confidence            5778888889888 6677777 5999987777766665  456763  569999999999988877664

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=97.92  E-value=1.2e-05  Score=84.38  Aligned_cols=36  Identities=42%  Similarity=0.646  Sum_probs=33.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP   96 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~   96 (506)
                      .||+|||||++||++|..|++.|++|+|+||++.+.
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~G   37 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPG   37 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            589999999999999999999999999999997653

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=97.92  E-value=1e-05  Score=83.86  Aligned_cols=58  Identities=29%  Similarity=0.467  Sum_probs=43.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCCcccc-----------c-cc---ccchHHHHHHhCchh
Q 010623           62 DVIVVGAGVAGAALANTLAKDG--RRVHVIERDLSEPDRIVG-----------E-LL---QPGGYLKLIELGLED  119 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G--~~v~vvE~~~~~~~~~~g-----------~-~l---~~~~~~~l~~~g~~~  119 (506)
                      +|+|||||++||+||+.|+++|  ++|+|+|+++....+...           . .+   .++...+++++|+.+
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~   76 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARKPSAPALVKELGLED   76 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcCCcHHHHHHHHHcCCcc
Confidence            6999999999999999999988  899999998765442211           1 11   123456778888764

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=97.92  E-value=0.00014  Score=75.69  Aligned_cols=100  Identities=21%  Similarity=0.230  Sum_probs=72.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||+.|+-+|..|++.|.+|+|+|+.+....                  .+                      
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------~~----------------------  214 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS------------------FL----------------------  214 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC------------------cC----------------------
Confidence            35799999999999999999999999999998752100                  00                      


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                           ..++...|.+.+++. ++.++.+ +++++..++++   +.+...+|+  ++.+|.||.|
T Consensus       215 ---------------------d~~~~~~l~~~l~~~-gI~v~~~~~v~~i~~~~~~---~~v~~~~g~--~i~~D~vi~a  267 (461)
T PRK05249        215 ---------------------DDEISDALSYHLRDS-GVTIRHNEEVEKVEGGDDG---VIVHLKSGK--KIKADCLLYA  267 (461)
T ss_pred             ---------------------CHHHHHHHHHHHHHc-CCEEEECCEEEEEEEeCCe---EEEEECCCC--EEEeCEEEEe
Confidence                                 012334555556665 7888877 48888766553   344456665  4679999999


Q ss_pred             cCCcccch
Q 010623          219 DGCFSNLR  226 (506)
Q Consensus       219 dG~~S~vR  226 (506)
                      +|......
T Consensus       268 ~G~~p~~~  275 (461)
T PRK05249        268 NGRTGNTD  275 (461)
T ss_pred             ecCCcccc
Confidence            99887654

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.91  E-value=0.00013  Score=74.29  Aligned_cols=98  Identities=23%  Similarity=0.279  Sum_probs=69.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||||..|+-+|..|++.|.+|+|+|+.+....+                .                         
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~----------------~-------------------------  183 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR----------------N-------------------------  183 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh----------------h-------------------------
Confidence            47999999999999999999999999999987521100                0                         


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD  219 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad  219 (506)
                                         ....+...+.+.+++. +++++.++ ++++.. ++.   +.+...+|++  +.||+||.|.
T Consensus       184 -------------------~~~~~~~~l~~~l~~~-GV~i~~~~~V~~i~~-~~~---~~v~l~~g~~--i~aD~Vv~a~  237 (396)
T PRK09754        184 -------------------APPPVQRYLLQRHQQA-GVRILLNNAIEHVVD-GEK---VELTLQSGET--LQADVVIYGI  237 (396)
T ss_pred             -------------------cCHHHHHHHHHHHHHC-CCEEEeCCeeEEEEc-CCE---EEEEECCCCE--EECCEEEECC
Confidence                               0001333455555565 78888774 888865 332   3445667764  6799999999


Q ss_pred             CCcccc
Q 010623          220 GCFSNL  225 (506)
Q Consensus       220 G~~S~v  225 (506)
                      |...+.
T Consensus       238 G~~pn~  243 (396)
T PRK09754        238 GISAND  243 (396)
T ss_pred             CCChhh
Confidence            987653

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=97.91  E-value=7.1e-05  Score=74.54  Aligned_cols=109  Identities=18%  Similarity=0.258  Sum_probs=72.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDG--RRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD  137 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G--~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  137 (506)
                      +.+|||||||-+|+.+|..|.++-  .++++|||++...       +.|    .|         .+...           
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl-------~~p----lL---------~eva~-----------   51 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL-------FTP----LL---------YEVAT-----------   51 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc-------cch----hh---------hhhhc-----------
Confidence            468999999999999999999974  8999999986311       111    11         00000           


Q ss_pred             CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEe
Q 010623          138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV  217 (506)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~  217 (506)
                                         ..++......-+.+.+...+++.+..++|+++..+..+|.     .+++.  .+.+|++|.
T Consensus        52 -------------------g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~V~-----~~~~~--~i~YD~LVv  105 (405)
T COG1252          52 -------------------GTLSESEIAIPLRALLRKSGNVQFVQGEVTDIDRDAKKVT-----LADLG--EISYDYLVV  105 (405)
T ss_pred             -------------------CCCChhheeccHHHHhcccCceEEEEEEEEEEcccCCEEE-----eCCCc--cccccEEEE
Confidence                               0111222233344555545569999999999998887543     33433  367999999


Q ss_pred             ecCCcccc
Q 010623          218 CDGCFSNL  225 (506)
Q Consensus       218 AdG~~S~v  225 (506)
                      |.|.....
T Consensus       106 alGs~~~~  113 (405)
T COG1252         106 ALGSETNY  113 (405)
T ss_pred             ecCCcCCc
Confidence            99987643

>PRK06370 mercuric reductase; Validated

Probab=97.91  E-value=0.00035  Score=72.66  Aligned_cols=103  Identities=18%  Similarity=0.254  Sum_probs=71.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||+.|+-+|..|++.|.+|+++|+.+.....                  .                      
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~------------------~----------------------  210 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR------------------E----------------------  210 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc------------------c----------------------
Confidence            358999999999999999999999999999987532100                  0                      


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                           ..++.+.+.+.+++. +++++.+ +++++..+++.+ .+.+...++. .++.+|.||.|
T Consensus       211 ---------------------~~~~~~~l~~~l~~~-GV~i~~~~~V~~i~~~~~~~-~v~~~~~~~~-~~i~~D~Vi~A  266 (463)
T PRK06370        211 ---------------------DEDVAAAVREILERE-GIDVRLNAECIRVERDGDGI-AVGLDCNGGA-PEITGSHILVA  266 (463)
T ss_pred             ---------------------CHHHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCEE-EEEEEeCCCc-eEEEeCEEEEC
Confidence                                 001223444555555 7888877 599988765543 2444433332 35789999999


Q ss_pred             cCCcccch
Q 010623          219 DGCFSNLR  226 (506)
Q Consensus       219 dG~~S~vR  226 (506)
                      .|......
T Consensus       267 ~G~~pn~~  274 (463)
T PRK06370        267 VGRVPNTD  274 (463)
T ss_pred             cCCCcCCC
Confidence            99776543

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.89  E-value=0.00021  Score=74.29  Aligned_cols=103  Identities=20%  Similarity=0.260  Sum_probs=72.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||+.|+-+|..|++.|.+|+|+|+.+....                  +..                     
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~------------------~~d---------------------  214 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP------------------GTD---------------------  214 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC------------------CCC---------------------
Confidence            46799999999999999999999999999998753110                  000                     


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEe
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIV  217 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~  217 (506)
                                            .++...+.+.+++. ++.++.+ +++++..+++++. +.+.+ .+|+..++.+|.||.
T Consensus       215 ----------------------~~~~~~l~~~l~~~-gV~i~~~~~V~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~  270 (466)
T PRK06115        215 ----------------------TETAKTLQKALTKQ-GMKFKLGSKVTGATAGADGVS-LTLEPAAGGAAETLQADYVLV  270 (466)
T ss_pred             ----------------------HHHHHHHHHHHHhc-CCEEEECcEEEEEEEcCCeEE-EEEEEcCCCceeEEEeCEEEE
Confidence                                  01233455555555 7888887 4899876655432 44443 234445688999999


Q ss_pred             ecCCcccc
Q 010623          218 CDGCFSNL  225 (506)
Q Consensus       218 AdG~~S~v  225 (506)
                      |.|....+
T Consensus       271 a~G~~pn~  278 (466)
T PRK06115        271 AIGRRPYT  278 (466)
T ss_pred             ccCCcccc
Confidence            99987654

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=97.88  E-value=6.9e-05  Score=73.94  Aligned_cols=56  Identities=25%  Similarity=0.325  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcc
Q 010623          163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFS  223 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S  223 (506)
                      .+.+.+++.+.+. |+++++.+ |++++..++.+.+|.  ..+|.  ++.+|+||.|-|..+
T Consensus       174 ~vvkni~~~l~~~-G~ei~f~t~VeDi~~~~~~~~~v~--~~~g~--~i~~~~vvlA~Grsg  230 (486)
T COG2509         174 KVVKNIREYLESL-GGEIRFNTEVEDIEIEDNEVLGVK--LTKGE--EIEADYVVLAPGRSG  230 (486)
T ss_pred             HHHHHHHHHHHhc-CcEEEeeeEEEEEEecCCceEEEE--ccCCc--EEecCEEEEccCcch
Confidence            5677889999998 57777775 999998887655444  56775  467999999999876

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.87  E-value=1.3e-05  Score=79.07  Aligned_cols=40  Identities=35%  Similarity=0.482  Sum_probs=35.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD   97 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~   97 (506)
                      +..-+++|||||++|+++|+.|++.|++|.++||+++...
T Consensus       122 ~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGG  161 (622)
T COG1148         122 EVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGG  161 (622)
T ss_pred             hhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccc
Confidence            3456899999999999999999999999999999986543

>PLN02268 probable polyamine oxidase

Probab=97.87  E-value=1.6e-05  Score=82.01  Aligned_cols=37  Identities=32%  Similarity=0.451  Sum_probs=33.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD   97 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~   97 (506)
                      .+|+|||||++||++|+.|.+.|++|+|+|+++....
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GG   37 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGG   37 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCc
Confidence            3799999999999999999999999999999876543

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=97.85  E-value=3.9e-05  Score=67.59  Aligned_cols=36  Identities=39%  Similarity=0.667  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKD--GRRVHVIERDLSE   95 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~~~   95 (506)
                      +.||+|||+|.+||++|+..+++  .++|.|+|..-.+
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaP  113 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAP  113 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeeecC
Confidence            47999999999999999999854  5899999997544

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.84  E-value=0.00027  Score=73.51  Aligned_cols=102  Identities=17%  Similarity=0.199  Sum_probs=68.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||||+.|+-+|..|++.|.+|+|+|+.+...+.                  ..                      
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~------------------~d----------------------  214 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA------------------AD----------------------  214 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc------------------CC----------------------
Confidence            57999999999999999999999999999988531100                  00                      


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD  219 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad  219 (506)
                                           ..+...+.+.+++.  +.++.+ +++++..+++.+. ++..+.+|+..++.+|.||.|.
T Consensus       215 ---------------------~~~~~~~~~~l~~~--v~i~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~i~~D~vi~a~  270 (471)
T PRK06467        215 ---------------------KDIVKVFTKRIKKQ--FNIMLETKVTAVEAKEDGIY-VTMEGKKAPAEPQRYDAVLVAV  270 (471)
T ss_pred             ---------------------HHHHHHHHHHHhhc--eEEEcCCEEEEEEEcCCEEE-EEEEeCCCcceEEEeCEEEEee
Confidence                                 01223344444443  566666 4888876655432 4443333434568899999999


Q ss_pred             CCcccch
Q 010623          220 GCFSNLR  226 (506)
Q Consensus       220 G~~S~vR  226 (506)
                      |....+.
T Consensus       271 G~~pn~~  277 (471)
T PRK06467        271 GRVPNGK  277 (471)
T ss_pred             cccccCC
Confidence            9887664

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=97.82  E-value=2.4e-05  Score=77.97  Aligned_cols=35  Identities=46%  Similarity=0.625  Sum_probs=32.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE   95 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~   95 (506)
                      +||+|||||++|+++|..|++.|.+|+|+|+++..
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~i   36 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHI   36 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence            69999999999999999999999999999997543

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=97.82  E-value=0.001  Score=65.93  Aligned_cols=64  Identities=13%  Similarity=0.212  Sum_probs=49.7

Q ss_pred             cccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccc
Q 010623          156 GRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNL  225 (506)
Q Consensus       156 ~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~v  225 (506)
                      +..++...+...|.+.+.+. |+.++.+ +|+++..+++++.+|.  +.+|   +++||.||.|+|+++.-
T Consensus       131 ~g~v~p~~l~~~l~~~~~~~-g~~~~~~~~v~~i~~~~~~~~~v~--~~~g---~~~a~~vV~a~G~~~~~  195 (337)
T TIGR02352       131 DAHVDPRALLKALEKALEKL-GVEIIEHTEVQHIEIRGEKVTAIV--TPSG---DVQADQVVLAAGAWAGE  195 (337)
T ss_pred             CceEChHHHHHHHHHHHHHc-CCEEEccceEEEEEeeCCEEEEEE--cCCC---EEECCEEEEcCChhhhh
Confidence            34567788999999999988 6777776 5999998777655443  4555   36799999999999853

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.80  E-value=0.0005  Score=70.99  Aligned_cols=98  Identities=16%  Similarity=0.141  Sum_probs=68.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||++|+.+|..|++.|.+|+|+|+.+...+.                  .                      
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~------------------~----------------------  196 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR------------------E----------------------  196 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC------------------C----------------------
Confidence            357999999999999999999999999999998532100                  0                      


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                           ...+...+.+.+++. +++++.+ +++++..+++.   +.+.. +|+  ++.+|.||.|
T Consensus       197 ---------------------~~~~~~~~~~~l~~~-GI~i~~~~~V~~i~~~~~~---v~v~~-~g~--~i~~D~viva  248 (438)
T PRK07251        197 ---------------------EPSVAALAKQYMEED-GITFLLNAHTTEVKNDGDQ---VLVVT-EDE--TYRFDALLYA  248 (438)
T ss_pred             ---------------------CHHHHHHHHHHHHHc-CCEEEcCCEEEEEEecCCE---EEEEE-CCe--EEEcCEEEEe
Confidence                                 001223444555555 7888877 48888765553   33333 344  4679999999


Q ss_pred             cCCcccc
Q 010623          219 DGCFSNL  225 (506)
Q Consensus       219 dG~~S~v  225 (506)
                      .|.....
T Consensus       249 ~G~~p~~  255 (438)
T PRK07251        249 TGRKPNT  255 (438)
T ss_pred             eCCCCCc
Confidence            9987654

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.79  E-value=2.6e-05  Score=86.40  Aligned_cols=35  Identities=37%  Similarity=0.511  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      ..+|+||||||||+++|+.|++.|++|+|+|+.+.
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~  571 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEK  571 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            47999999999999999999999999999999864

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=97.78  E-value=0.00016  Score=68.75  Aligned_cols=60  Identities=22%  Similarity=0.303  Sum_probs=44.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc---------c-----------cccccchHHHHHHhCch
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIV---------G-----------ELLQPGGYLKLIELGLE  118 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~---------g-----------~~l~~~~~~~l~~~g~~  118 (506)
                      ...+|.|||+|++||++|+.|+++ ++|+|+|.+.....+..         |           +.-.|+-.++++.+|+.
T Consensus         7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv~   85 (447)
T COG2907           7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGVD   85 (447)
T ss_pred             CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCCC
Confidence            357999999999999999999988 79999999875443211         1           01234556788888877


Q ss_pred             h
Q 010623          119 D  119 (506)
Q Consensus       119 ~  119 (506)
                      .
T Consensus        86 t   86 (447)
T COG2907          86 T   86 (447)
T ss_pred             C
Confidence            3

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=97.78  E-value=0.00037  Score=73.48  Aligned_cols=74  Identities=24%  Similarity=0.247  Sum_probs=58.2

Q ss_pred             ccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEeecCCccc-chhhccC
Q 010623          157 RGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSN-LRRSLCN  231 (506)
Q Consensus       157 ~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~-vR~~l~~  231 (506)
                      ..++...+...+.+.+.++ |+++.+. +|+++..+++++.+|++.+ .+|+..+++|+.||+|+|.||. +.+.++.
T Consensus       123 g~vdp~~l~~al~~~A~~~-Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~  199 (516)
T TIGR03377       123 GTVDPFRLVAANVLDAQEH-GARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGL  199 (516)
T ss_pred             cEECHHHHHHHHHHHHHHc-CCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcCC
Confidence            3567788889999999888 5666666 6999998888888888764 4566667899999999999984 5555554

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=97.77  E-value=0.0022  Score=64.86  Aligned_cols=61  Identities=18%  Similarity=0.199  Sum_probs=47.0

Q ss_pred             ccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCccc
Q 010623          157 RGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN  224 (506)
Q Consensus       157 ~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~  224 (506)
                      ..++...+...|.+.+.+  +++++.+ .|++++.++++   +.+.+.+|+.  ++||.||.|+|.++.
T Consensus       130 g~idp~~~~~~l~~~~~~--G~~i~~~~~V~~i~~~~~~---~~v~t~~g~~--~~a~~vV~a~G~~~~  191 (381)
T TIGR03197       130 GWLSPPQLCRALLAHAGI--RLTLHFNTEITSLERDGEG---WQLLDANGEV--IAASVVVLANGAQAG  191 (381)
T ss_pred             cccChHHHHHHHHhccCC--CcEEEeCCEEEEEEEcCCe---EEEEeCCCCE--EEcCEEEEcCCcccc
Confidence            456778899999988877  5777776 59999877664   4455677753  569999999999984

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.76  E-value=0.00029  Score=74.22  Aligned_cols=96  Identities=29%  Similarity=0.345  Sum_probs=71.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||||.+|+-+|..|+..|.+|+|+++.+....                    .                      
T Consensus       352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~--------------------~----------------------  389 (517)
T PRK15317        352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA--------------------D----------------------  389 (517)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc--------------------c----------------------
Confidence            4899999999999999999999999999998742100                    0                      


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEee
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVC  218 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~A  218 (506)
                                               ..+.+.+.+..++.++.++ ++++..+++++.++++.+ .+|++.++.+|.|+.|
T Consensus       390 -------------------------~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~  444 (517)
T PRK15317        390 -------------------------QVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQ  444 (517)
T ss_pred             -------------------------HHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEe
Confidence                                     0122233333488888885 888887767777777765 3566667899999999


Q ss_pred             cCCcc
Q 010623          219 DGCFS  223 (506)
Q Consensus       219 dG~~S  223 (506)
                      .|...
T Consensus       445 ~G~~p  449 (517)
T PRK15317        445 IGLVP  449 (517)
T ss_pred             ECCcc
Confidence            99653

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=97.75  E-value=0.00068  Score=69.43  Aligned_cols=44  Identities=27%  Similarity=0.154  Sum_probs=31.3

Q ss_pred             EEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccch
Q 010623          178 VRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLR  226 (506)
Q Consensus       178 v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR  226 (506)
                      ..++.++ |+++..++++   |++...+|+  +++||.||.|.......+
T Consensus       224 ~~i~l~~~V~~I~~~~~~---v~v~~~~g~--~~~ad~VI~a~p~~~l~~  268 (450)
T PF01593_consen  224 GEIRLNTPVTRIEREDGG---VTVTTEDGE--TIEADAVISAVPPSVLKN  268 (450)
T ss_dssp             GGEESSEEEEEEEEESSE---EEEEETTSS--EEEESEEEE-S-HHHHHT
T ss_pred             ceeecCCcceeccccccc---cccccccce--EEecceeeecCchhhhhh
Confidence            3677775 9999999874   556678887  466999998887655443

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PRK12831 putative oxidoreductase; Provisional

Probab=97.75  E-value=4.1e-05  Score=79.27  Aligned_cols=36  Identities=36%  Similarity=0.407  Sum_probs=33.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      ...||+||||||+||++|..|+++|++|+|+|+.+.
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~  174 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHE  174 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence            457999999999999999999999999999998753

>PRK06116 glutathione reductase; Validated

Probab=97.75  E-value=0.00034  Score=72.47  Aligned_cols=101  Identities=21%  Similarity=0.212  Sum_probs=71.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||++|+-+|..|++.|.+|+++++.+.....                  ..                     
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------~~---------------------  207 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRG------------------FD---------------------  207 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccc------------------cC---------------------
Confidence            358999999999999999999999999999987531000                  00                     


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                            .++...+.+.+++. +++++.+ +|.++..++++.  +.+...+|+  ++.+|.||.|
T Consensus       208 ----------------------~~~~~~l~~~L~~~-GV~i~~~~~V~~i~~~~~g~--~~v~~~~g~--~i~~D~Vv~a  260 (450)
T PRK06116        208 ----------------------PDIRETLVEEMEKK-GIRLHTNAVPKAVEKNADGS--LTLTLEDGE--TLTVDCLIWA  260 (450)
T ss_pred             ----------------------HHHHHHHHHHHHHC-CcEEECCCEEEEEEEcCCce--EEEEEcCCc--EEEeCEEEEe
Confidence                                  01223444555555 7888877 499998665431  344456675  4679999999


Q ss_pred             cCCcccch
Q 010623          219 DGCFSNLR  226 (506)
Q Consensus       219 dG~~S~vR  226 (506)
                      .|....+.
T Consensus       261 ~G~~p~~~  268 (450)
T PRK06116        261 IGREPNTD  268 (450)
T ss_pred             eCCCcCCC
Confidence            99876543

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.73  E-value=0.0004  Score=73.08  Aligned_cols=96  Identities=29%  Similarity=0.367  Sum_probs=69.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||||+.|+-+|..|++.|.+|+|+|+.+...         .                                  
T Consensus       353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~---------~----------------------------------  389 (515)
T TIGR03140       353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK---------A----------------------------------  389 (515)
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC---------h----------------------------------
Confidence            489999999999999999999999999999764210         0                                  


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeC-CccEEEEEcCeEEee
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTK-AGEELTAYAPLTIVC  218 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~-~G~~~~i~a~~vV~A  218 (506)
                                              ...+.+.+.+..++.++.++ ++++..+++++.+|++.+. +|+..++.+|.||.|
T Consensus       390 ------------------------~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a  445 (515)
T TIGR03140       390 ------------------------DKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQ  445 (515)
T ss_pred             ------------------------hHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEE
Confidence                                    00122233333378888875 8888777677766776543 455567889999999


Q ss_pred             cCCcc
Q 010623          219 DGCFS  223 (506)
Q Consensus       219 dG~~S  223 (506)
                      .|...
T Consensus       446 ~G~~P  450 (515)
T TIGR03140       446 IGLVP  450 (515)
T ss_pred             eCCcC
Confidence            99643

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.71  E-value=5e-05  Score=78.27  Aligned_cols=37  Identities=46%  Similarity=0.537  Sum_probs=33.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAK--DGRRVHVIERDLSEP   96 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~--~G~~v~vvE~~~~~~   96 (506)
                      ..+|+||||||||+++|..|++  .|++|+|+|+.+.+.
T Consensus        26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg   64 (491)
T PLN02852         26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF   64 (491)
T ss_pred             CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence            4689999999999999999987  799999999997554

>PRK10262 thioredoxin reductase; Provisional

Probab=97.71  E-value=0.00053  Score=67.62  Aligned_cols=99  Identities=21%  Similarity=0.241  Sum_probs=69.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||+|..|+-+|..|++.|.+|+++++.+...         .           .                      
T Consensus       147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~---------~-----------~----------------------  184 (321)
T PRK10262        147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---------A-----------E----------------------  184 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC---------C-----------C----------------------
Confidence            589999999999999999999999999999874210         0           0                      


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeC--CccEEEEEcCeEEe
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTK--AGEELTAYAPLTIV  217 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~--~G~~~~i~a~~vV~  217 (506)
                                           ..+.+.+.+.+++. ++++..+ +++++..+++++.++++.+.  +++..++.+|.||.
T Consensus       185 ---------------------~~~~~~~~~~l~~~-gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~  242 (321)
T PRK10262        185 ---------------------KILIKRLMDKVENG-NIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFV  242 (321)
T ss_pred             ---------------------HHHHHHHHhhccCC-CeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEE
Confidence                                 00122334444444 7888877 48888766655666776543  23445688999999


Q ss_pred             ecCCcc
Q 010623          218 CDGCFS  223 (506)
Q Consensus       218 AdG~~S  223 (506)
                      |.|...
T Consensus       243 a~G~~p  248 (321)
T PRK10262        243 AIGHSP  248 (321)
T ss_pred             EeCCcc
Confidence            999643

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.71  E-value=0.00097  Score=68.94  Aligned_cols=98  Identities=17%  Similarity=0.269  Sum_probs=69.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||||++|+-+|..|++.|.+|+++|+.+....                  ++.                      
T Consensus       167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~------------------~~d----------------------  206 (446)
T TIGR01424       167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR------------------GFD----------------------  206 (446)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc------------------ccC----------------------
Confidence            4699999999999999999999999999998743100                  000                      


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD  219 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad  219 (506)
                                           .++...+.+.+.+. ++.++.+ ++.++..++++   +.+...+|+  ++.+|.||.|.
T Consensus       207 ---------------------~~~~~~l~~~l~~~-gV~i~~~~~v~~i~~~~~~---~~v~~~~g~--~i~~D~viva~  259 (446)
T TIGR01424       207 ---------------------DDMRALLARNMEGR-GIRIHPQTSLTSITKTDDG---LKVTLSHGE--EIVADVVLFAT  259 (446)
T ss_pred             ---------------------HHHHHHHHHHHHHC-CCEEEeCCEEEEEEEcCCe---EEEEEcCCc--EeecCEEEEee
Confidence                                 01233444555555 7888877 58898766553   334445665  46799999999


Q ss_pred             CCcccc
Q 010623          220 GCFSNL  225 (506)
Q Consensus       220 G~~S~v  225 (506)
                      |.....
T Consensus       260 G~~pn~  265 (446)
T TIGR01424       260 GRSPNT  265 (446)
T ss_pred             CCCcCC
Confidence            987654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR03452 mycothione_red mycothione reductase

Probab=97.70  E-value=0.00024  Score=73.44  Aligned_cols=32  Identities=19%  Similarity=0.442  Sum_probs=27.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +|||+||||||+|..+|.  ++.|.+|+|+|++.
T Consensus         2 ~yD~vvIG~G~~g~~aa~--~~~g~~V~lie~~~   33 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDP--RFADKRIAIVEKGT   33 (452)
T ss_pred             CcCEEEECCCHHHHHHHH--HHCCCeEEEEeCCC
Confidence            599999999999998864  45799999999863

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PLN02568 polyamine oxidase

Probab=97.70  E-value=4.9e-05  Score=79.86  Aligned_cols=39  Identities=26%  Similarity=0.365  Sum_probs=34.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC-----CcEEEEecCCCCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDG-----RRVHVIERDLSEPD   97 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G-----~~v~vvE~~~~~~~   97 (506)
                      +..||+|||||++||++|..|++.|     ++|+|+|++.....
T Consensus         4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GG   47 (539)
T PLN02568          4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGG   47 (539)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCC
Confidence            3579999999999999999999988     89999999876543

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=97.69  E-value=0.0001  Score=71.94  Aligned_cols=67  Identities=33%  Similarity=0.400  Sum_probs=47.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcE--EEEecCCCCCCcccc-----c--------ccc---c---chHHHHHHhCc
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRV--HVIERDLSEPDRIVG-----E--------LLQ---P---GGYLKLIELGL  117 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v--~vvE~~~~~~~~~~g-----~--------~l~---~---~~~~~l~~~g~  117 (506)
                      +..+|+|||||++||++|+.|++.+-+|  +|+|+.+......+.     .        .+.   +   +.+..+.++|+
T Consensus        10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl   89 (491)
T KOG1276|consen   10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGL   89 (491)
T ss_pred             ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCc
Confidence            4589999999999999999999998765  559998765432221     1        111   1   23466778999


Q ss_pred             hhHHhhcc
Q 010623          118 EDCVEQID  125 (506)
Q Consensus       118 ~~~~~~~~  125 (506)
                      .+++..++
T Consensus        90 ~~e~~~i~   97 (491)
T KOG1276|consen   90 EDELQPID   97 (491)
T ss_pred             cceeeecC
Confidence            87766554

>PLN02507 glutathione reductase

Probab=97.69  E-value=0.00055  Score=71.66  Aligned_cols=98  Identities=18%  Similarity=0.268  Sum_probs=70.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||||+.|+-+|..|++.|.+|+|+++.+..-.                  +..                      
T Consensus       204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~------------------~~d----------------------  243 (499)
T PLN02507        204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR------------------GFD----------------------  243 (499)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCc------------------ccC----------------------
Confidence            4799999999999999999999999999998752100                  000                      


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD  219 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad  219 (506)
                                           .++...+.+.+++. +++++.+ +|.++..++++   +.+...+|+  ++.+|.|+.|.
T Consensus       244 ---------------------~~~~~~l~~~l~~~-GI~i~~~~~V~~i~~~~~~---~~v~~~~g~--~i~~D~vl~a~  296 (499)
T PLN02507        244 ---------------------DEMRAVVARNLEGR-GINLHPRTNLTQLTKTEGG---IKVITDHGE--EFVADVVLFAT  296 (499)
T ss_pred             ---------------------HHHHHHHHHHHHhC-CCEEEeCCEEEEEEEeCCe---EEEEECCCc--EEEcCEEEEee
Confidence                                 01233444555555 7888888 48998866553   344456675  36799999999


Q ss_pred             CCcccc
Q 010623          220 GCFSNL  225 (506)
Q Consensus       220 G~~S~v  225 (506)
                      |.....
T Consensus       297 G~~pn~  302 (499)
T PLN02507        297 GRAPNT  302 (499)
T ss_pred             cCCCCC
Confidence            987765

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.68  E-value=0.00056  Score=71.10  Aligned_cols=99  Identities=20%  Similarity=0.229  Sum_probs=70.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||||..|+-+|..|++.|.+|+++|+.+......                                         
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~-----------------------------------------  216 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGE-----------------------------------------  216 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCC-----------------------------------------
Confidence            479999999999999999999999999999875311100                                         


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD  219 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad  219 (506)
                                          ...+...+.+.+++. ++.++.+ +++++..++++   +.+...+|+  ++.+|.||.|.
T Consensus       217 --------------------d~~~~~~l~~~L~~~-gV~i~~~~~v~~v~~~~~~---~~v~~~~g~--~l~~D~vl~a~  270 (466)
T PRK07845        217 --------------------DADAAEVLEEVFARR-GMTVLKRSRAESVERTGDG---VVVTLTDGR--TVEGSHALMAV  270 (466)
T ss_pred             --------------------CHHHHHHHHHHHHHC-CcEEEcCCEEEEEEEeCCE---EEEEECCCc--EEEecEEEEee
Confidence                                001223445555555 7888877 48898766654   344455675  46799999999


Q ss_pred             CCcccch
Q 010623          220 GCFSNLR  226 (506)
Q Consensus       220 G~~S~vR  226 (506)
                      |......
T Consensus       271 G~~pn~~  277 (466)
T PRK07845        271 GSVPNTA  277 (466)
T ss_pred             cCCcCCC
Confidence            9877653

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=0.00032  Score=66.37  Aligned_cols=144  Identities=19%  Similarity=0.263  Sum_probs=76.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCCCcccccc---cccch--HHHHHHhCch-hHHhhcccceecc
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERD-LSEPDRIVGEL---LQPGG--YLKLIELGLE-DCVEQIDAQRVFG  131 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~-~~~~~~~~g~~---l~~~~--~~~l~~~g~~-~~~~~~~~~~~~~  131 (506)
                      .+||.+|||||.+||+||-.++..|.+|.++|-- |.+.....|.+   .+-+-  -+.+.+.-+. +.+...   ...+
T Consensus        18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da---~kyG   94 (503)
T KOG4716|consen   18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDA---RKYG   94 (503)
T ss_pred             CCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHH---HhhC
Confidence            3699999999999999999999999999999974 33333333321   11111  1222222211 222211   1111


Q ss_pred             eEEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCC---CEEEEeceEEEEEee---CCeEEEEEEEeCCc
Q 010623          132 YALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLP---NVRLEQGTVTSLLEE---KGTIKGVQYKTKAG  205 (506)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~---~v~i~~~~v~~~~~~---~~~v~~v~v~~~~G  205 (506)
                      +..-.  +...                -+...|.+...+++.+.+   .+.++..+|+-+..-   -+.. .+..+..+|
T Consensus        95 W~~~e--~~ik----------------hdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h-~I~at~~~g  155 (503)
T KOG4716|consen   95 WNVDE--QKIK----------------HDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPH-KIKATNKKG  155 (503)
T ss_pred             CCCcc--cccc----------------ccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccc-eEEEecCCC
Confidence            11100  0000                012345566666666542   133333334333211   1111 255566778


Q ss_pred             cEEEEEcCeEEeecCCccc
Q 010623          206 EELTAYAPLTIVCDGCFSN  224 (506)
Q Consensus       206 ~~~~i~a~~vV~AdG~~S~  224 (506)
                      ++..+.|+.+|.|+|.+-+
T Consensus       156 k~~~~ta~~fvIatG~RPr  174 (503)
T KOG4716|consen  156 KERFLTAENFVIATGLRPR  174 (503)
T ss_pred             ceEEeecceEEEEecCCCC
Confidence            7777889999999998653

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.67  E-value=0.00059  Score=70.56  Aligned_cols=101  Identities=16%  Similarity=0.161  Sum_probs=70.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||||..|+-+|..|++.|.+|+|+|+.+.....                  +.                      
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~------------------~d----------------------  206 (450)
T TIGR01421       167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS------------------FD----------------------  206 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc------------------cC----------------------
Confidence            58999999999999999999999999999987531100                  00                      


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD  219 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad  219 (506)
                                           ..+.+.+.+.+++. ++.++.+ +++++..++++.  +.+...+|+ .++.+|.||.|.
T Consensus       207 ---------------------~~~~~~~~~~l~~~-gI~i~~~~~v~~i~~~~~~~--~~v~~~~g~-~~i~~D~vi~a~  261 (450)
T TIGR01421       207 ---------------------SMISETITEEYEKE-GINVHKLSKPVKVEKTVEGK--LVIHFEDGK-SIDDVDELIWAI  261 (450)
T ss_pred             ---------------------HHHHHHHHHHHHHc-CCEEEcCCEEEEEEEeCCce--EEEEECCCc-EEEEcCEEEEee
Confidence                                 01333445555555 7888887 488887654432  333445563 357899999999


Q ss_pred             CCcccch
Q 010623          220 GCFSNLR  226 (506)
Q Consensus       220 G~~S~vR  226 (506)
                      |......
T Consensus       262 G~~pn~~  268 (450)
T TIGR01421       262 GRKPNTK  268 (450)
T ss_pred             CCCcCcc
Confidence            9876653

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.67  E-value=0.00061  Score=70.36  Aligned_cols=97  Identities=14%  Similarity=0.201  Sum_probs=69.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||||+.|+-+|..|++.|.+|+|+|+.+...+.                  .                       
T Consensus       159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~-----------------------  197 (441)
T PRK08010        159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR------------------E-----------------------  197 (441)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC------------------c-----------------------
Confidence            48999999999999999999999999999987421100                  0                       


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD  219 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad  219 (506)
                                          ...+...+.+.+++. +++++.+ +++++..+++.   +.+.+++|+   +.+|.||.|.
T Consensus       198 --------------------~~~~~~~l~~~l~~~-gV~v~~~~~v~~i~~~~~~---v~v~~~~g~---i~~D~vl~a~  250 (441)
T PRK08010        198 --------------------DRDIADNIATILRDQ-GVDIILNAHVERISHHENQ---VQVHSEHAQ---LAVDALLIAS  250 (441)
T ss_pred             --------------------CHHHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCE---EEEEEcCCe---EEeCEEEEee
Confidence                                001233455556665 7888877 48998876553   444454553   5699999999


Q ss_pred             CCcccc
Q 010623          220 GCFSNL  225 (506)
Q Consensus       220 G~~S~v  225 (506)
                      |.....
T Consensus       251 G~~pn~  256 (441)
T PRK08010        251 GRQPAT  256 (441)
T ss_pred             cCCcCC
Confidence            988765

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=97.66  E-value=0.00027  Score=71.45  Aligned_cols=34  Identities=21%  Similarity=0.458  Sum_probs=30.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKD--GRRVHVIERDLS   94 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~~   94 (506)
                      .+|+|||||+||+.+|..|.+.  ..+|+|+++++.
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~   38 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG   38 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence            5899999999999999999885  468999999863

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.66  E-value=0.0006  Score=70.85  Aligned_cols=102  Identities=24%  Similarity=0.276  Sum_probs=69.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||+.|+-+|..|++.|.+|+++|+.+...+         .         ..                     
T Consensus       169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~---------~---------~d---------------------  209 (460)
T PRK06292        169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP---------L---------ED---------------------  209 (460)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc---------c---------hh---------------------
Confidence            35799999999999999999999999999998753110         0         00                     


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                            .++...+.+.+++.  +.++.+ +++++..+++  ..+++...+|+..++.+|.||.|
T Consensus       210 ----------------------~~~~~~~~~~l~~~--I~i~~~~~v~~i~~~~~--~~v~~~~~~~~~~~i~~D~vi~a  263 (460)
T PRK06292        210 ----------------------PEVSKQAQKILSKE--FKIKLGAKVTSVEKSGD--EKVEELEKGGKTETIEADYVLVA  263 (460)
T ss_pred             ----------------------HHHHHHHHHHHhhc--cEEEcCCEEEEEEEcCC--ceEEEEEcCCceEEEEeCEEEEc
Confidence                                  01223344444443  677766 5888876544  13444344555456889999999


Q ss_pred             cCCcccch
Q 010623          219 DGCFSNLR  226 (506)
Q Consensus       219 dG~~S~vR  226 (506)
                      .|....+.
T Consensus       264 ~G~~p~~~  271 (460)
T PRK06292        264 TGRRPNTD  271 (460)
T ss_pred             cCCccCCC
Confidence            99876554

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=97.65  E-value=7.3e-05  Score=70.38  Aligned_cols=36  Identities=36%  Similarity=0.586  Sum_probs=33.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP   96 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~   96 (506)
                      +|.+|||+|.+|+.+|..|+++|.+|.|+||++...
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIG   37 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIG   37 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCC
Confidence            799999999999999999999999999999997544

>PRK07846 mycothione reductase; Reviewed

Probab=97.65  E-value=0.00076  Score=69.73  Aligned_cols=98  Identities=26%  Similarity=0.354  Sum_probs=67.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||+.|+-+|..|++.|.+|+++|+.+...         +         ....                    
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll---------~---------~~d~--------------------  207 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL---------R---------HLDD--------------------  207 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc---------c---------ccCH--------------------
Confidence            3589999999999999999999999999999875311         0         0000                    


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                             ++.+.+.+.. +. ++.++.+ +++++..++++   +.+...+|+  ++.+|.||.|
T Consensus       208 -----------------------~~~~~l~~l~-~~-~v~i~~~~~v~~i~~~~~~---v~v~~~~g~--~i~~D~vl~a  257 (451)
T PRK07846        208 -----------------------DISERFTELA-SK-RWDVRLGRNVVGVSQDGSG---VTLRLDDGS--TVEADVLLVA  257 (451)
T ss_pred             -----------------------HHHHHHHHHH-hc-CeEEEeCCEEEEEEEcCCE---EEEEECCCc--EeecCEEEEE
Confidence                                   1112222222 33 5888777 48888766553   444455665  4679999999


Q ss_pred             cCCcccc
Q 010623          219 DGCFSNL  225 (506)
Q Consensus       219 dG~~S~v  225 (506)
                      .|.....
T Consensus       258 ~G~~pn~  264 (451)
T PRK07846        258 TGRVPNG  264 (451)
T ss_pred             ECCccCc
Confidence            9987754

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=97.65  E-value=0.00084  Score=65.28  Aligned_cols=96  Identities=23%  Similarity=0.300  Sum_probs=67.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||+|++|+-+|..|++.|.+|+++++.+...                    ..                     
T Consensus       141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~--------------------~~---------------------  179 (300)
T TIGR01292       141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR--------------------AE---------------------  179 (300)
T ss_pred             CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC--------------------cC---------------------
Confidence            3589999999999999999999999999999864210                    00                     


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEe
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIV  217 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~  217 (506)
                                                ..+.+.+.+..++.++.+ +++++..++ ++..+++.+ .+|+..++.+|.||.
T Consensus       180 --------------------------~~~~~~l~~~~gv~~~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~vi~  232 (300)
T TIGR01292       180 --------------------------KILLDRLRKNPNIEFLWNSTVKEIVGDN-KVEGVKIKNTVTGEEEELKVDGVFI  232 (300)
T ss_pred             --------------------------HHHHHHHHhCCCeEEEeccEEEEEEccC-cEEEEEEEecCCCceEEEEccEEEE
Confidence                                      011223333347888877 488887654 455566544 356656788999999


Q ss_pred             ecCCcc
Q 010623          218 CDGCFS  223 (506)
Q Consensus       218 AdG~~S  223 (506)
                      |+|...
T Consensus       233 a~G~~~  238 (300)
T TIGR01292       233 AIGHEP  238 (300)
T ss_pred             eeCCCC
Confidence            999543

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.64  E-value=0.00021  Score=67.35  Aligned_cols=115  Identities=21%  Similarity=0.221  Sum_probs=71.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC---c--ccccccccchH---HHHHHhCch-hHHhhcccceec
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD---R--IVGELLQPGGY---LKLIELGLE-DCVEQIDAQRVF  130 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~---~--~~g~~l~~~~~---~~l~~~g~~-~~~~~~~~~~~~  130 (506)
                      ...|-|||||.||.-+|+.++++|++|.|+|-++....   +  ..++.+..++.   ..-...|+. ++++..+...+.
T Consensus         3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~TpaH~td~fAELVCSNSlr~~~~~navGlLk~EMR~lgSlii~   82 (439)
T COG1206           3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPAHKTDNFAELVCSNSLRSDALTNAVGLLKAEMRLLGSLIIE   82 (439)
T ss_pred             CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccCCCcccccchhhheeccccccchhhhhhHHHHHHHHHhhhHHhh
Confidence            46789999999999999999999999999998864221   1  11122222221   112223333 222221111000


Q ss_pred             ceEEEECCceeeeecCCcCCCCCc--ccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEe
Q 010623          131 GYALFKDGNRTQISYPLEKFHSDV--AGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLE  190 (506)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~  190 (506)
                                      ..+...-|  ....++|..|-+.+.+.+++++.++++.++|+++-.
T Consensus        83 ----------------~Ad~~~VPAGgALAVDR~~Fs~~vT~~l~~hpli~vireEvt~iP~  128 (439)
T COG1206          83 ----------------AADKHRVPAGGALAVDRDGFSQAVTEKLENHPLIEVIREEVTEIPP  128 (439)
T ss_pred             ----------------hhhhccCCCCceeeecHhHHHHHHHHHHhcCCCEEEEccccccCCC
Confidence                            00001112  224689999999999999999999999888888754

>PLN02676 polyamine oxidase

Probab=97.60  E-value=8.4e-05  Score=77.39  Aligned_cols=37  Identities=32%  Similarity=0.509  Sum_probs=33.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDLSEP   96 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~~~~   96 (506)
                      .+||+|||||++||++|+.|+++|. +|+|+|++....
T Consensus        26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~G   63 (487)
T PLN02676         26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIG   63 (487)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCC
Confidence            4799999999999999999999998 699999987543

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.60  E-value=0.00038  Score=77.00  Aligned_cols=35  Identities=14%  Similarity=0.303  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKD----GRRVHVIERDLSE   95 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~----G~~v~vvE~~~~~   95 (506)
                      .+|+|||||++|+.+|..|.++    +++|+|+++.+..
T Consensus         4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~   42 (847)
T PRK14989          4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI   42 (847)
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC
Confidence            4899999999999999999764    5799999998754

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.59  E-value=7.2e-05  Score=81.66  Aligned_cols=35  Identities=29%  Similarity=0.433  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ...+|+||||||||+++|+.|++.|++|+|+|+.+
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~  416 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK  416 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence            45799999999999999999999999999999853

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=97.58  E-value=8.6e-05  Score=82.02  Aligned_cols=35  Identities=46%  Similarity=0.593  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      ..+|+||||||||+++|..|++.|++|+|+|+.+.
T Consensus       539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~  573 (1019)
T PRK09853        539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREEN  573 (1019)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccc
Confidence            46999999999999999999999999999999864

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.58  E-value=9.5e-05  Score=76.38  Aligned_cols=36  Identities=44%  Similarity=0.502  Sum_probs=33.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      ...+|+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~  167 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHK  167 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            457999999999999999999999999999999753

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.57  E-value=0.00033  Score=77.36  Aligned_cols=33  Identities=18%  Similarity=0.309  Sum_probs=28.7

Q ss_pred             EEEECCCHHHHHHHHHHHHC---CCcEEEEecCCCC
Q 010623           63 VIVVGAGVAGAALANTLAKD---GRRVHVIERDLSE   95 (506)
Q Consensus        63 VvIVGgG~aGl~~A~~La~~---G~~v~vvE~~~~~   95 (506)
                      |+|||||++|+.+|..|.+.   +++|+|+|+.+..
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~   36 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP   36 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence            68999999999999998775   4799999998753

>PRK14694 putative mercuric reductase; Provisional

Probab=97.57  E-value=0.00092  Score=69.60  Aligned_cols=97  Identities=22%  Similarity=0.252  Sum_probs=67.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||||++|+-+|..|++.|.+|+++++...         +. .         .                       
T Consensus       179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~---------l~-~---------~-----------------------  216 (468)
T PRK14694        179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRV---------LS-Q---------E-----------------------  216 (468)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCC---------CC-C---------C-----------------------
Confidence            5799999999999999999999999999986421         00 0         0                       


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD  219 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad  219 (506)
                                          ...+...+.+.+++. +++++.+ ++.++..+++.   +.+.+.++   ++.+|.||.|.
T Consensus       217 --------------------~~~~~~~l~~~l~~~-GI~v~~~~~v~~i~~~~~~---~~v~~~~~---~i~~D~vi~a~  269 (468)
T PRK14694        217 --------------------DPAVGEAIEAAFRRE-GIEVLKQTQASEVDYNGRE---FILETNAG---TLRAEQLLVAT  269 (468)
T ss_pred             --------------------CHHHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCE---EEEEECCC---EEEeCEEEEcc
Confidence                                001233445555555 7888887 58888766553   33444444   37799999999


Q ss_pred             CCcccch
Q 010623          220 GCFSNLR  226 (506)
Q Consensus       220 G~~S~vR  226 (506)
                      |......
T Consensus       270 G~~pn~~  276 (468)
T PRK14694        270 GRTPNTE  276 (468)
T ss_pred             CCCCCcC
Confidence            9887653

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=97.55  E-value=0.0001  Score=79.96  Aligned_cols=38  Identities=39%  Similarity=0.461  Sum_probs=34.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP   96 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~   96 (506)
                      ...+|+|||||++||++|+.|++.|++|+|+|++....
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~G  274 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPG  274 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCC
Confidence            35899999999999999999999999999999987553

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.54  E-value=0.0001  Score=79.91  Aligned_cols=37  Identities=41%  Similarity=0.552  Sum_probs=33.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE   95 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~   95 (506)
                      ...+|+||||||+||++|..|++.|++|+|+|+.+..
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~  362 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEI  362 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            3579999999999999999999999999999998643

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.53  E-value=0.00038  Score=69.69  Aligned_cols=34  Identities=24%  Similarity=0.391  Sum_probs=29.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC---CcEEEEecCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDG---RRVHVIERDLS   94 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G---~~v~vvE~~~~   94 (506)
                      ++|+|||||++|+.+|..|.+.-   -.+.|+|+.+.
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~   38 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN   38 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence            68999999999999999998752   13999999875

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.53  E-value=0.0008  Score=74.34  Aligned_cols=98  Identities=18%  Similarity=0.238  Sum_probs=68.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+....+               .+  .                      
T Consensus       141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~---------------~l--d----------------------  181 (785)
T TIGR02374       141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK---------------QL--D----------------------  181 (785)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhh---------------hc--C----------------------
Confidence            47999999999999999999999999999987421000               00  0                      


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD  219 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad  219 (506)
                                           ......+.+.+++. ++.++.++ ++++..++ .+.+|  ...||+  ++.+|.||.|.
T Consensus       182 ---------------------~~~~~~l~~~l~~~-GV~v~~~~~v~~i~~~~-~~~~v--~~~dG~--~i~~D~Vi~a~  234 (785)
T TIGR02374       182 ---------------------QTAGRLLQRELEQK-GLTFLLEKDTVEIVGAT-KADRI--RFKDGS--SLEADLIVMAA  234 (785)
T ss_pred             ---------------------HHHHHHHHHHHHHc-CCEEEeCCceEEEEcCC-ceEEE--EECCCC--EEEcCEEEECC
Confidence                                 01223444555555 78888885 88886543 33334  356776  46799999999


Q ss_pred             CCccc
Q 010623          220 GCFSN  224 (506)
Q Consensus       220 G~~S~  224 (506)
                      |....
T Consensus       235 G~~Pn  239 (785)
T TIGR02374       235 GIRPN  239 (785)
T ss_pred             CCCcC
Confidence            98754

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.52  E-value=0.0008  Score=74.51  Aligned_cols=100  Identities=23%  Similarity=0.252  Sum_probs=70.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -.++|||||+.|+-+|..|++.|.+|+|+|+.+.....               .  +.                      
T Consensus       146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~---------------~--ld----------------------  186 (847)
T PRK14989        146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAE---------------Q--LD----------------------  186 (847)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhh---------------h--cC----------------------
Confidence            46999999999999999999999999999987521000               0  00                      


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeC-CeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEK-GTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~-~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                           ......+.+.+++. +++++.++ ++++..++ +.+  ..+...+|++  +.+|+||.|
T Consensus       187 ---------------------~~~~~~l~~~L~~~-GV~v~~~~~v~~I~~~~~~~~--~~v~~~dG~~--i~~D~Vv~A  240 (847)
T PRK14989        187 ---------------------QMGGEQLRRKIESM-GVRVHTSKNTLEIVQEGVEAR--KTMRFADGSE--LEVDFIVFS  240 (847)
T ss_pred             ---------------------HHHHHHHHHHHHHC-CCEEEcCCeEEEEEecCCCce--EEEEECCCCE--EEcCEEEEC
Confidence                                 01223455566666 78888885 88887543 222  3344567874  679999999


Q ss_pred             cCCcccc
Q 010623          219 DGCFSNL  225 (506)
Q Consensus       219 dG~~S~v  225 (506)
                      .|.....
T Consensus       241 ~G~rPn~  247 (847)
T PRK14989        241 TGIRPQD  247 (847)
T ss_pred             CCcccCc
Confidence            9987654

>PRK14727 putative mercuric reductase; Provisional

Probab=97.52  E-value=0.0011  Score=69.17  Aligned_cols=97  Identities=20%  Similarity=0.250  Sum_probs=68.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||||+.|+-+|..|++.|.+|+|+++...         +. .         ..                      
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~---------l~-~---------~d----------------------  227 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTL---------LF-R---------ED----------------------  227 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC---------CC-c---------ch----------------------
Confidence            4799999999999999999999999999987421         00 0         00                      


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD  219 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad  219 (506)
                                           ..+...+.+.+++. ++.++.+ +++++..+++.   +.+...+++   +.+|.||.|.
T Consensus       228 ---------------------~~~~~~l~~~L~~~-GV~i~~~~~V~~i~~~~~~---~~v~~~~g~---i~aD~VlvA~  279 (479)
T PRK14727        228 ---------------------PLLGETLTACFEKE-GIEVLNNTQASLVEHDDNG---FVLTTGHGE---LRAEKLLIST  279 (479)
T ss_pred             ---------------------HHHHHHHHHHHHhC-CCEEEcCcEEEEEEEeCCE---EEEEEcCCe---EEeCEEEEcc
Confidence                                 01223444555555 7888877 48888766553   444455553   6799999999


Q ss_pred             CCcccch
Q 010623          220 GCFSNLR  226 (506)
Q Consensus       220 G~~S~vR  226 (506)
                      |....+.
T Consensus       280 G~~pn~~  286 (479)
T PRK14727        280 GRHANTH  286 (479)
T ss_pred             CCCCCcc
Confidence            9988654

>PLN02529 lysine-specific histone demethylase 1

Probab=97.51  E-value=0.00014  Score=78.44  Aligned_cols=36  Identities=42%  Similarity=0.517  Sum_probs=33.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      .+.+|+|||||++||++|..|+++|++|+|+|+++.
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~  194 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNR  194 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCcc
Confidence            357999999999999999999999999999999864

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.51  E-value=0.00014  Score=74.05  Aligned_cols=37  Identities=19%  Similarity=0.235  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHH-HHCCCcEEEEecCCCCC
Q 010623           60 DADVIVVGAGVAGAALANTL-AKDGRRVHVIERDLSEP   96 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~L-a~~G~~v~vvE~~~~~~   96 (506)
                      ...|+||||||||+.+|..| ++.|++|+|+||.+.+.
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg   76 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY   76 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence            46899999999999999965 57899999999998654

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.50  E-value=0.00011  Score=82.76  Aligned_cols=36  Identities=36%  Similarity=0.326  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE   95 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~   95 (506)
                      ..+|+|||||||||++|..|++.|++|+|+|+.+..
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~  465 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVV  465 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence            469999999999999999999999999999998644

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.50  E-value=0.0013  Score=68.53  Aligned_cols=99  Identities=17%  Similarity=0.211  Sum_probs=67.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||||+.|+-+|..|++.|.+|+|+++.. ..         +         ...                      
T Consensus       181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~l---------~---------~~d----------------------  219 (484)
T TIGR01438       181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSI-LL---------R---------GFD----------------------  219 (484)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCcEEEEEecc-cc---------c---------ccC----------------------
Confidence            479999999999999999999999999998641 10         0         000                      


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCcc-EEEEEcCeEEee
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGE-ELTAYAPLTIVC  218 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~-~~~i~a~~vV~A  218 (506)
                                           .++...+.+.+++. ++.++.+. ++++...++.+. +++  .+|+ ..++.+|.||.|
T Consensus       220 ---------------------~~~~~~l~~~L~~~-gV~i~~~~~v~~v~~~~~~~~-v~~--~~~~~~~~i~~D~vl~a  274 (484)
T TIGR01438       220 ---------------------QDCANKVGEHMEEH-GVKFKRQFVPIKVEQIEAKVK-VTF--TDSTNGIEEEYDTVLLA  274 (484)
T ss_pred             ---------------------HHHHHHHHHHHHHc-CCEEEeCceEEEEEEcCCeEE-EEE--ecCCcceEEEeCEEEEE
Confidence                                 01223444555555 78888875 778876655332 433  3332 235789999999


Q ss_pred             cCCcccc
Q 010623          219 DGCFSNL  225 (506)
Q Consensus       219 dG~~S~v  225 (506)
                      .|....+
T Consensus       275 ~G~~pn~  281 (484)
T TIGR01438       275 IGRDACT  281 (484)
T ss_pred             ecCCcCC
Confidence            9976654

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.50  E-value=0.0014  Score=69.77  Aligned_cols=63  Identities=14%  Similarity=0.212  Sum_probs=52.1

Q ss_pred             hHHHHHHHHHHHcCCCEEEEece-EEEEEee-CCeEEEEEEEe-CCccEEEEEcCeEEeecCCcccc
Q 010623          162 GRFVQRLREKAASLPNVRLEQGT-VTSLLEE-KGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL  225 (506)
Q Consensus       162 ~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~-~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~v  225 (506)
                      ..+...|.+.+.+. +++++..+ ++++..+ +++|.||.+.+ .+|+.+.++|+.||.|+|+.+.+
T Consensus       126 ~~i~~~L~~~~~~~-gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~  191 (570)
T PRK05675        126 HALLHTLYQGNLKN-GTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGRI  191 (570)
T ss_pred             HHHHHHHHHHHhcc-CCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence            35788898888876 78888885 9999874 68899998754 68888889999999999999864

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.50  E-value=0.00013  Score=80.33  Aligned_cols=36  Identities=39%  Similarity=0.473  Sum_probs=33.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      ...+|+|||||||||++|..|++.|++|+|+|+.+.
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~  465 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHE  465 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            457999999999999999999999999999999743

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=97.49  E-value=0.0011  Score=68.11  Aligned_cols=97  Identities=22%  Similarity=0.324  Sum_probs=67.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||||++|+-+|..|++.|.+|+++++.+...        .+       .+                         
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~--------~~-------~~-------------------------  177 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERIL--------NK-------LF-------------------------  177 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccC--------cc-------cc-------------------------
Confidence            489999999999999999999999999999875310        00       00                         


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD  219 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad  219 (506)
                                          ...+...+.+.+++. +++++.+ ++.++..++. +  +  ...+|++  +.+|.||.|.
T Consensus       178 --------------------~~~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~-~--v--~~~~g~~--i~~D~vi~a~  229 (427)
T TIGR03385       178 --------------------DEEMNQIVEEELKKH-EINLRLNEEVDSIEGEER-V--K--VFTSGGV--YQADMVILAT  229 (427)
T ss_pred             --------------------CHHHHHHHHHHHHHc-CCEEEeCCEEEEEecCCC-E--E--EEcCCCE--EEeCEEEECC
Confidence                                011333455555665 7888877 4888865432 2  2  2346653  6799999999


Q ss_pred             CCcccc
Q 010623          220 GCFSNL  225 (506)
Q Consensus       220 G~~S~v  225 (506)
                      |.....
T Consensus       230 G~~p~~  235 (427)
T TIGR03385       230 GIKPNS  235 (427)
T ss_pred             CccCCH
Confidence            987543

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.49  E-value=0.0011  Score=68.55  Aligned_cols=97  Identities=24%  Similarity=0.366  Sum_probs=66.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||||++|+-+|..|++.|.+|+++++.+.....               .+                         
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~---------------~~-------------------------  189 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPD---------------SF-------------------------  189 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCch---------------hc-------------------------
Confidence            57999999999999999999999999999986421000               00                         


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD  219 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad  219 (506)
                                          ...+.+.+.+.+++. +++++.+ +++++..+ +++..+  ..+++   ++.+|.||.|.
T Consensus       190 --------------------~~~~~~~l~~~l~~~-gI~v~~~~~v~~i~~~-~~~~~v--~~~~~---~i~~d~vi~a~  242 (444)
T PRK09564        190 --------------------DKEITDVMEEELREN-GVELHLNEFVKSLIGE-DKVEGV--VTDKG---EYEADVVIVAT  242 (444)
T ss_pred             --------------------CHHHHHHHHHHHHHC-CCEEEcCCEEEEEecC-CcEEEE--EeCCC---EEEcCEEEECc
Confidence                                012334555566666 6888877 48888543 333323  23333   36799999999


Q ss_pred             CCccc
Q 010623          220 GCFSN  224 (506)
Q Consensus       220 G~~S~  224 (506)
                      |....
T Consensus       243 G~~p~  247 (444)
T PRK09564        243 GVKPN  247 (444)
T ss_pred             CCCcC
Confidence            98654

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.47  E-value=0.0002  Score=74.29  Aligned_cols=37  Identities=41%  Similarity=0.510  Sum_probs=33.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE   95 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~   95 (506)
                      ...+|+||||||+|+++|..|++.|++|+|+|+.+..
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~  176 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEI  176 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            3579999999999999999999999999999998653

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.46  E-value=0.0015  Score=68.44  Aligned_cols=98  Identities=14%  Similarity=0.180  Sum_probs=68.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||||+.|+-+|..|++.|.+|+|+++.. ...     .+.                                   
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~l~-----~~d-----------------------------------  221 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSI-PLR-----GFD-----------------------------------  221 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCc-ccc-----cCC-----------------------------------
Confidence            379999999999999999999999999998641 000     000                                   


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD  219 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad  219 (506)
                                           ..+.+.+.+.+++. ++.++.+. +.++...++.   +.+...+|++  +.+|.||.|.
T Consensus       222 ---------------------~~~~~~l~~~l~~~-GV~i~~~~~v~~v~~~~~~---~~v~~~~g~~--i~~D~vl~a~  274 (499)
T PTZ00052        222 ---------------------RQCSEKVVEYMKEQ-GTLFLEGVVPINIEKMDDK---IKVLFSDGTT--ELFDTVLYAT  274 (499)
T ss_pred             ---------------------HHHHHHHHHHHHHc-CCEEEcCCeEEEEEEcCCe---EEEEECCCCE--EEcCEEEEee
Confidence                                 01223445555555 78888775 7778765543   3344556764  5699999999


Q ss_pred             CCcccch
Q 010623          220 GCFSNLR  226 (506)
Q Consensus       220 G~~S~vR  226 (506)
                      |....+.
T Consensus       275 G~~pn~~  281 (499)
T PTZ00052        275 GRKPDIK  281 (499)
T ss_pred             CCCCCcc
Confidence            9887654

>PTZ00058 glutathione reductase; Provisional

Probab=97.46  E-value=0.0016  Score=68.71  Aligned_cols=101  Identities=15%  Similarity=0.192  Sum_probs=68.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||..|+-+|..|++.|.+|+|+|+.+....                  .+.                     
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~------------------~~d---------------------  277 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR------------------KFD---------------------  277 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccc------------------cCC---------------------
Confidence            45799999999999999999999999999998742100                  000                     


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                            .++.+.+.+.+++. ++.++.+. +.++..++++  ++.+...+++ .++.+|.|+.|
T Consensus       278 ----------------------~~i~~~l~~~L~~~-GV~i~~~~~V~~I~~~~~~--~v~v~~~~~~-~~i~aD~VlvA  331 (561)
T PTZ00058        278 ----------------------ETIINELENDMKKN-NINIITHANVEEIEKVKEK--NLTIYLSDGR-KYEHFDYVIYC  331 (561)
T ss_pred             ----------------------HHHHHHHHHHHHHC-CCEEEeCCEEEEEEecCCC--cEEEEECCCC-EEEECCEEEEC
Confidence                                  01233444555555 78888875 8888765432  2333333333 35789999999


Q ss_pred             cCCcccc
Q 010623          219 DGCFSNL  225 (506)
Q Consensus       219 dG~~S~v  225 (506)
                      .|....+
T Consensus       332 ~Gr~Pn~  338 (561)
T PTZ00058        332 VGRSPNT  338 (561)
T ss_pred             cCCCCCc
Confidence            9976543

>TIGR03452 mycothione_red mycothione reductase

Probab=97.45  E-value=0.0019  Score=66.91  Aligned_cols=98  Identities=23%  Similarity=0.365  Sum_probs=66.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||+.|+-+|..|++.|.+|+++|+.+....                .  +.+                    
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~----------------~--~d~--------------------  210 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR----------------H--LDE--------------------  210 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc----------------c--cCH--------------------
Confidence            35899999999999999999999999999998742100                0  000                    


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                             ++...+.+.. +. ++.++.+ +++++..++++   +.+...+|+  ++.+|.|+.|
T Consensus       211 -----------------------~~~~~l~~~~-~~-gI~i~~~~~V~~i~~~~~~---v~v~~~~g~--~i~~D~vl~a  260 (452)
T TIGR03452       211 -----------------------DISDRFTEIA-KK-KWDIRLGRNVTAVEQDGDG---VTLTLDDGS--TVTADVLLVA  260 (452)
T ss_pred             -----------------------HHHHHHHHHH-hc-CCEEEeCCEEEEEEEcCCe---EEEEEcCCC--EEEcCEEEEe
Confidence                                   1112222222 23 5788776 58888766553   344455665  4779999999


Q ss_pred             cCCcccc
Q 010623          219 DGCFSNL  225 (506)
Q Consensus       219 dG~~S~v  225 (506)
                      .|.....
T Consensus       261 ~G~~pn~  267 (452)
T TIGR03452       261 TGRVPNG  267 (452)
T ss_pred             eccCcCC
Confidence            9977644

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK13748 putative mercuric reductase; Provisional

Probab=97.43  E-value=0.0025  Score=68.11  Aligned_cols=96  Identities=17%  Similarity=0.225  Sum_probs=67.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||||+.|+-+|..|++.|.+|+|+++...         +. .         ..                      
T Consensus       271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~---------l~-~---------~d----------------------  309 (561)
T PRK13748        271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTL---------FF-R---------ED----------------------  309 (561)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcc---------cc-c---------cC----------------------
Confidence            4799999999999999999999999999997521         00 0         00                      


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD  219 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad  219 (506)
                                           .++...+.+.+++. ++.++.+ ++.++..+++.   +.+.+.++   ++.+|.||.|.
T Consensus       310 ---------------------~~~~~~l~~~l~~~-gI~i~~~~~v~~i~~~~~~---~~v~~~~~---~i~~D~vi~a~  361 (561)
T PRK13748        310 ---------------------PAIGEAVTAAFRAE-GIEVLEHTQASQVAHVDGE---FVLTTGHG---ELRADKLLVAT  361 (561)
T ss_pred             ---------------------HHHHHHHHHHHHHC-CCEEEcCCEEEEEEecCCE---EEEEecCC---eEEeCEEEEcc
Confidence                                 01223344455555 7888877 48888766553   33444444   36799999999


Q ss_pred             CCcccc
Q 010623          220 GCFSNL  225 (506)
Q Consensus       220 G~~S~v  225 (506)
                      |.....
T Consensus       362 G~~pn~  367 (561)
T PRK13748        362 GRAPNT  367 (561)
T ss_pred             CCCcCC
Confidence            987665

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.38  E-value=0.0022  Score=66.75  Aligned_cols=100  Identities=14%  Similarity=0.196  Sum_probs=68.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC---CCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623           61 ADVIVVGAGVAGAALANTLAKD---GRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD  137 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~---G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  137 (506)
                      -+|+|||||+.|+-+|..++..   |.+|+|+|+.+....                .  +                    
T Consensus       188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~----------------~--~--------------------  229 (486)
T TIGR01423       188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR----------------G--F--------------------  229 (486)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc----------------c--c--------------------
Confidence            5799999999999999776554   999999998753110                0  0                    


Q ss_pred             CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623          138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI  216 (506)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV  216 (506)
                                             ..++.+.+.+.+++. ++.++.++ ++++..++++...+  ...+|+  ++.+|.||
T Consensus       230 -----------------------d~~~~~~l~~~L~~~-GI~i~~~~~v~~i~~~~~~~~~v--~~~~g~--~i~~D~vl  281 (486)
T TIGR01423       230 -----------------------DSTLRKELTKQLRAN-GINIMTNENPAKVTLNADGSKHV--TFESGK--TLDVDVVM  281 (486)
T ss_pred             -----------------------CHHHHHHHHHHHHHc-CCEEEcCCEEEEEEEcCCceEEE--EEcCCC--EEEcCEEE
Confidence                                   012334555556665 78888875 88887654432223  344565  47799999


Q ss_pred             eecCCcccch
Q 010623          217 VCDGCFSNLR  226 (506)
Q Consensus       217 ~AdG~~S~vR  226 (506)
                      .|.|......
T Consensus       282 ~a~G~~Pn~~  291 (486)
T TIGR01423       282 MAIGRVPRTQ  291 (486)
T ss_pred             EeeCCCcCcc
Confidence            9999877654

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.37  E-value=0.001  Score=65.89  Aligned_cols=139  Identities=24%  Similarity=0.266  Sum_probs=73.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEecCCCCCC----cccccccccchHHHHHHhCchhHHhhcccceecc
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGR--RVHVIERDLSEPD----RIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFG  131 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~~~~~----~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~  131 (506)
                      ....+|+|||||.++.-.+..|.+.+.  +|+++=|++...+    ....+.+.|.-++.+..+.-.....-......  
T Consensus       188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~--  265 (341)
T PF13434_consen  188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRH--  265 (341)
T ss_dssp             ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGG--
T ss_pred             cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHh--
Confidence            346899999999999999999999875  8999999864322    11224466666666655443321111110000  


Q ss_pred             eEEEECCceeeeecCCcCCCCCcccccccchH---HHHHHH-HHHHcCCCEEEEece-EEEEEeeCC-eEEEEEEEe-CC
Q 010623          132 YALFKDGNRTQISYPLEKFHSDVAGRGFHNGR---FVQRLR-EKAASLPNVRLEQGT-VTSLLEEKG-TIKGVQYKT-KA  204 (506)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---l~~~L~-~~~~~~~~v~i~~~~-v~~~~~~~~-~v~~v~v~~-~~  204 (506)
                                            .....|+...   +.+.|+ +.+...+.+.++.++ |+++...++ ++. +++.+ .+
T Consensus       266 ----------------------~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~-l~~~~~~~  322 (341)
T PF13434_consen  266 ----------------------TNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVR-LTLRHRQT  322 (341)
T ss_dssp             ----------------------GTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEE-EEEEETTT
T ss_pred             ----------------------hcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEE-EEEEECCC
Confidence                                  0001122221   222232 234444456777665 999988874 443 66655 46


Q ss_pred             ccEEEEEcCeEEeecCC
Q 010623          205 GEELTAYAPLTIVCDGC  221 (506)
Q Consensus       205 G~~~~i~a~~vV~AdG~  221 (506)
                      |+..++++|+||.|||.
T Consensus       323 ~~~~~~~~D~VilATGy  339 (341)
T PF13434_consen  323 GEEETLEVDAVILATGY  339 (341)
T ss_dssp             --EEEEEESEEEE---E
T ss_pred             CCeEEEecCEEEEcCCc
Confidence            77778899999999995

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.36  E-value=0.0003  Score=70.35  Aligned_cols=35  Identities=40%  Similarity=0.467  Sum_probs=32.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      ..+|+|||||++|+.+|..|++.|++|+++|+.+.
T Consensus        18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~   52 (352)
T PRK12770         18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPE   52 (352)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            46999999999999999999999999999999864

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=97.36  E-value=0.002  Score=65.77  Aligned_cols=102  Identities=29%  Similarity=0.326  Sum_probs=72.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      ..+|+|||||+.|+.+|..|+++|++|+++|+.+........                                      
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~--------------------------------------  177 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD--------------------------------------  177 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh--------------------------------------
Confidence            369999999999999999999999999999998642211000                                      


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                            ..+...+.+.+++. ++.++.++ +.+++...+......+...++.  .+.+|+++.+
T Consensus       178 ----------------------~~~~~~~~~~l~~~-gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~d~~~~~  232 (415)
T COG0446         178 ----------------------PEVAEELAELLEKY-GVELLLGTKVVGVEGKGNTLVVERVVGIDGE--EIKADLVIIG  232 (415)
T ss_pred             ----------------------HHHHHHHHHHHHHC-CcEEEeCCceEEEEcccCcceeeEEEEeCCc--EEEeeEEEEe
Confidence                                  12444566666666 58887774 8888877654332113344554  4679999999


Q ss_pred             cCCccc
Q 010623          219 DGCFSN  224 (506)
Q Consensus       219 dG~~S~  224 (506)
                      .|..-+
T Consensus       233 ~g~~p~  238 (415)
T COG0446         233 PGERPN  238 (415)
T ss_pred             eccccc
Confidence            997764

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.34  E-value=0.00034  Score=72.91  Aligned_cols=36  Identities=42%  Similarity=0.557  Sum_probs=33.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE   95 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~   95 (506)
                      ..+|+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~  178 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRC  178 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            469999999999999999999999999999998643

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.33  E-value=0.0019  Score=66.61  Aligned_cols=94  Identities=17%  Similarity=0.216  Sum_probs=65.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||||+.|+-+|..|++.|.+|+|+|+.+....                .  +.                      
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~----------------~--~d----------------------  188 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK----------------L--MD----------------------  188 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch----------------h--cC----------------------
Confidence            4799999999999999999999999999998752110                0  00                      


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD  219 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad  219 (506)
                                           .++.+.+.+.+++. ++.++.+ +++++..  .   .++  ..+|+  ++.+|.||.|.
T Consensus       189 ---------------------~~~~~~l~~~l~~~-gI~i~~~~~v~~i~~--~---~v~--~~~g~--~~~~D~vl~a~  237 (438)
T PRK13512        189 ---------------------ADMNQPILDELDKR-EIPYRLNEEIDAING--N---EVT--FKSGK--VEHYDMIIEGV  237 (438)
T ss_pred             ---------------------HHHHHHHHHHHHhc-CCEEEECCeEEEEeC--C---EEE--ECCCC--EEEeCEEEECc
Confidence                                 01233445555555 7888877 4888753  2   233  34565  36699999999


Q ss_pred             CCcccc
Q 010623          220 GCFSNL  225 (506)
Q Consensus       220 G~~S~v  225 (506)
                      |.....
T Consensus       238 G~~pn~  243 (438)
T PRK13512        238 GTHPNS  243 (438)
T ss_pred             CCCcCh
Confidence            987643

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.32  E-value=0.0029  Score=65.38  Aligned_cols=33  Identities=30%  Similarity=0.444  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      -+|+|||||..|+-+|..|++.|.+|+++++.+
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~  305 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT  305 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence            489999999999999999999999999999874

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.26  E-value=0.00042  Score=74.83  Aligned_cols=36  Identities=39%  Similarity=0.564  Sum_probs=33.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE   95 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~   95 (506)
                      ..+|+||||||+||++|..|++.|++|+|+|+.+..
T Consensus       310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~  345 (639)
T PRK12809        310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEI  345 (639)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence            578999999999999999999999999999998753

>PLN02546 glutathione reductase

Probab=97.22  E-value=0.0029  Score=66.86  Aligned_cols=101  Identities=15%  Similarity=0.211  Sum_probs=69.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||..|+-+|..|++.|.+|+|+|+.+....                  ++.                     
T Consensus       252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~------------------~~d---------------------  292 (558)
T PLN02546        252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR------------------GFD---------------------  292 (558)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc------------------ccC---------------------
Confidence            35899999999999999999999999999998742100                  000                     


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                            ..+...+.+.+++. +++++.++ ++++..++++.  +.+...+++  ...+|.||.|
T Consensus       293 ----------------------~~~~~~l~~~L~~~-GV~i~~~~~v~~i~~~~~g~--v~v~~~~g~--~~~~D~Viva  345 (558)
T PLN02546        293 ----------------------EEVRDFVAEQMSLR-GIEFHTEESPQAIIKSADGS--LSLKTNKGT--VEGFSHVMFA  345 (558)
T ss_pred             ----------------------HHHHHHHHHHHHHC-CcEEEeCCEEEEEEEcCCCE--EEEEECCeE--EEecCEEEEe
Confidence                                  01233445555555 78888774 88887644432  334444443  2348999999


Q ss_pred             cCCcccch
Q 010623          219 DGCFSNLR  226 (506)
Q Consensus       219 dG~~S~vR  226 (506)
                      .|......
T Consensus       346 ~G~~Pnt~  353 (558)
T PLN02546        346 TGRKPNTK  353 (558)
T ss_pred             eccccCCC
Confidence            99887654

>PLN02785 Protein HOTHEAD

Probab=97.22  E-value=0.00053  Score=72.87  Aligned_cols=36  Identities=42%  Similarity=0.493  Sum_probs=32.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      +..||+||||||.+|+.+|..|++ +.+|+|+|+.+.
T Consensus        53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~   88 (587)
T PLN02785         53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV   88 (587)
T ss_pred             cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            446999999999999999999999 689999999863

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.22  E-value=0.0034  Score=62.78  Aligned_cols=33  Identities=30%  Similarity=0.321  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCc-EEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRR-VHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~-v~vvE~~~   93 (506)
                      -+|+|||+|+.|+-+|..|.+.|.+ |+|+++.+
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~  206 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT  206 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence            4799999999999999999999997 99999763

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.22  E-value=0.0043  Score=59.30  Aligned_cols=35  Identities=34%  Similarity=0.488  Sum_probs=32.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .++|.+|||||..|+++|...+.+|.+|.|+|..-
T Consensus        19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f   53 (478)
T KOG0405|consen   19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPF   53 (478)
T ss_pred             cccceEEEcCCcchhHHhHHHHhcCceEEEEecCC
Confidence            37999999999999999999999999999999863

>PRK12831 putative oxidoreductase; Provisional

Probab=97.19  E-value=0.004  Score=64.62  Aligned_cols=34  Identities=32%  Similarity=0.419  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .-+|+|||||.+|+-+|..|.+.|.+|+++++..
T Consensus       281 gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~  314 (464)
T PRK12831        281 GKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS  314 (464)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence            3589999999999999999999999999999864

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=97.18  E-value=0.00036  Score=73.58  Aligned_cols=59  Identities=24%  Similarity=0.312  Sum_probs=45.6

Q ss_pred             HHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCc--cEEEEEcCeEEeecCCccc
Q 010623          166 QRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAG--EELTAYAPLTIVCDGCFSN  224 (506)
Q Consensus       166 ~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G--~~~~i~a~~vV~AdG~~S~  224 (506)
                      ..+...+.+.++.++..+. |+.+..+++++++|++...++  .+..+.++.||.|.|+.-.
T Consensus       206 ~a~l~~a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~S  267 (542)
T COG2303         206 RAYLKPALKRPNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINS  267 (542)
T ss_pred             hhcchhHhcCCceEEecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCC
Confidence            3444556777899999875 999999999999999887654  3455678899999997754

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.16  E-value=0.00037  Score=71.24  Aligned_cols=37  Identities=41%  Similarity=0.557  Sum_probs=33.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP   96 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~   96 (506)
                      .-+|.||||||+||++|..|++.|++|+++|+.+...
T Consensus       123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~G  159 (457)
T COG0493         123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDG  159 (457)
T ss_pred             CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCc
Confidence            3799999999999999999999999999999987543

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=97.15  E-value=0.00064  Score=67.65  Aligned_cols=40  Identities=35%  Similarity=0.577  Sum_probs=33.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC-CcEEEEecCCCCCCcc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDG-RRVHVIERDLSEPDRI   99 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G-~~v~vvE~~~~~~~~~   99 (506)
                      ...|+|||||+|||+||..|-+.| .+|+|+|..+....+.
T Consensus        21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI   61 (498)
T KOG0685|consen   21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRI   61 (498)
T ss_pred             CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceE
Confidence            468999999999999999998766 5999999987665543

>PLN03000 amine oxidase

Probab=97.12  E-value=0.00068  Score=73.76  Aligned_cols=37  Identities=35%  Similarity=0.521  Sum_probs=34.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP   96 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~   96 (506)
                      ..+|+|||||++||++|..|++.|++|+|+|+++...
T Consensus       184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riG  220 (881)
T PLN03000        184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPG  220 (881)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCC
Confidence            4799999999999999999999999999999987544

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=97.06  E-value=0.0019  Score=64.46  Aligned_cols=94  Identities=27%  Similarity=0.316  Sum_probs=63.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC-------------CcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhccc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDG-------------RRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDA  126 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G-------------~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~  126 (506)
                      ..+|+|||||++|.-+|..|+..-             ++|+|+|+.+..-+.                            
T Consensus       155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~----------------------------  206 (405)
T COG1252         155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPM----------------------------  206 (405)
T ss_pred             eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccC----------------------------
Confidence            368999999999999999987531             367777776521100                            


Q ss_pred             ceecceEEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCc
Q 010623          127 QRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAG  205 (506)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G  205 (506)
                                                       ...++.....+.++++ ||++..++ |++++.+     +|++  .+|
T Consensus       207 ---------------------------------~~~~l~~~a~~~L~~~-GV~v~l~~~Vt~v~~~-----~v~~--~~g  245 (405)
T COG1252         207 ---------------------------------FPPKLSKYAERALEKL-GVEVLLGTPVTEVTPD-----GVTL--KDG  245 (405)
T ss_pred             ---------------------------------CCHHHHHHHHHHHHHC-CCEEEcCCceEEECCC-----cEEE--ccC
Confidence                                             0112334445556666 89998886 8888655     3443  445


Q ss_pred             cEEEEEcCeEEeecCCcc
Q 010623          206 EELTAYAPLTIVCDGCFS  223 (506)
Q Consensus       206 ~~~~i~a~~vV~AdG~~S  223 (506)
                      ++ +|.++.+|-|.|...
T Consensus       246 ~~-~I~~~tvvWaaGv~a  262 (405)
T COG1252         246 EE-EIPADTVVWAAGVRA  262 (405)
T ss_pred             Ce-eEecCEEEEcCCCcC
Confidence            43 588999999999764

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.01  E-value=0.0079  Score=64.66  Aligned_cols=33  Identities=21%  Similarity=0.284  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      -+|+|||||..|+-+|..|++.|.+|+|+|+.+
T Consensus       313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~  345 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSP  345 (659)
T ss_pred             CceEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence            479999999999999999999999999999975

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=96.97  E-value=0.0054  Score=62.98  Aligned_cols=91  Identities=23%  Similarity=0.316  Sum_probs=62.0

Q ss_pred             cEEEECCCHHHHHHHHHHHH--------------CCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccc
Q 010623           62 DVIVVGAGVAGAALANTLAK--------------DGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQ  127 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~--------------~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~  127 (506)
                      .|+|||||++|+-+|..|+.              .|.+|+|+|+.+...+.                  +.         
T Consensus       175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~------------------~~---------  227 (424)
T PTZ00318        175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS------------------FD---------  227 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc------------------CC---------
Confidence            79999999999999999985              47889999987421100                  00         


Q ss_pred             eecceEEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCcc
Q 010623          128 RVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGE  206 (506)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~  206 (506)
                                                        ..+.+.+.+.+++. +++++.+ +++++..  +   .|+  .++|+
T Consensus       228 ----------------------------------~~~~~~~~~~L~~~-gV~v~~~~~v~~v~~--~---~v~--~~~g~  265 (424)
T PTZ00318        228 ----------------------------------QALRKYGQRRLRRL-GVDIRTKTAVKEVLD--K---EVV--LKDGE  265 (424)
T ss_pred             ----------------------------------HHHHHHHHHHHHHC-CCEEEeCCeEEEEeC--C---EEE--ECCCC
Confidence                                              01333445555555 7888877 4887753  2   233  45776


Q ss_pred             EEEEEcCeEEeecCCcc
Q 010623          207 ELTAYAPLTIVCDGCFS  223 (506)
Q Consensus       207 ~~~i~a~~vV~AdG~~S  223 (506)
                        ++.+|.+|.|.|...
T Consensus       266 --~i~~d~vi~~~G~~~  280 (424)
T PTZ00318        266 --VIPTGLVVWSTGVGP  280 (424)
T ss_pred             --EEEccEEEEccCCCC
Confidence              467999999999643

>PLN02976 amine oxidase

Probab=96.97  E-value=0.0011  Score=75.00  Aligned_cols=38  Identities=37%  Similarity=0.427  Sum_probs=34.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP   96 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~   96 (506)
                      ...+|+|||||++|+++|+.|++.|++|+|+|+++...
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vG  729 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIG  729 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCC
Confidence            45899999999999999999999999999999976543

>PRK13984 putative oxidoreductase; Provisional

Probab=96.91  E-value=0.0013  Score=70.78  Aligned_cols=37  Identities=35%  Similarity=0.348  Sum_probs=33.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE   95 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~   95 (506)
                      ...+|+|||+|++|+++|..|+++|++|+|+|+.+..
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~  318 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKP  318 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            4578999999999999999999999999999998643

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=96.84  E-value=0.011  Score=59.22  Aligned_cols=101  Identities=28%  Similarity=0.332  Sum_probs=72.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-.|++||||-.|+-+|..|...+.+|+++++.+.+-++-.               +                       
T Consensus       213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf---------------~-----------------------  254 (478)
T KOG1336|consen  213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLF---------------G-----------------------  254 (478)
T ss_pred             CceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhh---------------h-----------------------
Confidence            46799999999999999999999999999999864222100               0                       


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeC-CeEEEEEEEeCCccEEEEEcCeEEe
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEK-GTIKGVQYKTKAGEELTAYAPLTIV  217 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~-~~v~~v~v~~~~G~~~~i~a~~vV~  217 (506)
                                            ..+.+...+..++. ++++..++ +.+++.+. +++.  .+...||+  ++.||+||.
T Consensus       255 ----------------------~~i~~~~~~y~e~k-gVk~~~~t~~s~l~~~~~Gev~--~V~l~dg~--~l~adlvv~  307 (478)
T KOG1336|consen  255 ----------------------PSIGQFYEDYYENK-GVKFYLGTVVSSLEGNSDGEVS--EVKLKDGK--TLEADLVVV  307 (478)
T ss_pred             ----------------------HHHHHHHHHHHHhc-CeEEEEecceeecccCCCCcEE--EEEeccCC--EeccCeEEE
Confidence                                  01223334444444 89999887 78887665 5544  45567887  467999999


Q ss_pred             ecCCcccc
Q 010623          218 CDGCFSNL  225 (506)
Q Consensus       218 AdG~~S~v  225 (506)
                      +.|+.+.+
T Consensus       308 GiG~~p~t  315 (478)
T KOG1336|consen  308 GIGIKPNT  315 (478)
T ss_pred             eecccccc
Confidence            99987654

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=96.82  E-value=0.018  Score=55.98  Aligned_cols=111  Identities=18%  Similarity=0.238  Sum_probs=77.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG  138 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (506)
                      .+-..+|||||..||-.+.--.+.|-+|+++|-.+....     .+             ..                   
T Consensus       210 vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~-----~m-------------D~-------------------  252 (506)
T KOG1335|consen  210 VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGG-----VM-------------DG-------------------  252 (506)
T ss_pred             CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcc-----cc-------------CH-------------------
Confidence            346789999999999999999999999999997743111     00             10                   


Q ss_pred             ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEE
Q 010623          139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTI  216 (506)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV  216 (506)
                                              ++.....+.+.++ ++.+..++ |+....++++...+++.+ .+|+.++++||.+.
T Consensus       253 ------------------------Eisk~~qr~L~kQ-gikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlL  307 (506)
T KOG1335|consen  253 ------------------------EISKAFQRVLQKQ-GIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLL  307 (506)
T ss_pred             ------------------------HHHHHHHHHHHhc-CceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEE
Confidence                                    1222233333344 78888885 999988877444477766 47778889999999


Q ss_pred             eecCCcccchhhccCC
Q 010623          217 VCDGCFSNLRRSLCNP  232 (506)
Q Consensus       217 ~AdG~~S~vR~~l~~~  232 (506)
                      .|.|.+- .-+-|+++
T Consensus       308 VsiGRrP-~t~GLgle  322 (506)
T KOG1335|consen  308 VSIGRRP-FTEGLGLE  322 (506)
T ss_pred             EEccCcc-cccCCChh
Confidence            9999653 33445443

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=96.79  E-value=0.012  Score=62.57  Aligned_cols=34  Identities=38%  Similarity=0.496  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .-+|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus       143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~  176 (555)
T TIGR03143       143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP  176 (555)
T ss_pred             CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence            3589999999999999999999999999999874

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=96.73  E-value=0.002  Score=62.28  Aligned_cols=37  Identities=30%  Similarity=0.322  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAK--DGRRVHVIERDLSEP   96 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~--~G~~v~vvE~~~~~~   96 (506)
                      ...|+|||+||||+.+|..|-+  .+++|.|+|+.|.+-
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF   58 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF   58 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc
Confidence            3599999999999999998877  468999999998654

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=96.69  E-value=0.02  Score=63.23  Aligned_cols=33  Identities=30%  Similarity=0.371  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCc-EEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRR-VHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~-v~vvE~~~   93 (506)
                      -+|+|||||.+|+-+|..+.+.|.+ |+++++++
T Consensus       571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~  604 (752)
T PRK12778        571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS  604 (752)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            5899999999999999999999997 99999874

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=96.62  E-value=0.02  Score=65.01  Aligned_cols=95  Identities=18%  Similarity=0.186  Sum_probs=66.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG  138 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (506)
                      .-+|+|||+|+.|+-+|..|++.|. .|+|+|..+..         .    .                            
T Consensus       317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~---------~----~----------------------------  355 (985)
T TIGR01372       317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV---------S----P----------------------------  355 (985)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch---------h----H----------------------------
Confidence            3589999999999999999999996 57899876321         0    0                            


Q ss_pred             ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEe
Q 010623          139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV  217 (506)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~  217 (506)
                                                  .+.+.+++. ++.++.++ ++++..+ +++.+|++...+|+..++.||.|+.
T Consensus       356 ----------------------------~l~~~L~~~-GV~i~~~~~v~~i~g~-~~v~~V~l~~~~g~~~~i~~D~V~v  405 (985)
T TIGR01372       356 ----------------------------EARAEAREL-GIEVLTGHVVAATEGG-KRVSGVAVARNGGAGQRLEADALAV  405 (985)
T ss_pred             ----------------------------HHHHHHHHc-CCEEEcCCeEEEEecC-CcEEEEEEEecCCceEEEECCEEEE
Confidence                                        012233444 78888775 7777544 4455677764345545688999999


Q ss_pred             ecCCcccc
Q 010623          218 CDGCFSNL  225 (506)
Q Consensus       218 AdG~~S~v  225 (506)
                      +.|....+
T Consensus       406 a~G~~Pnt  413 (985)
T TIGR01372       406 SGGWTPVV  413 (985)
T ss_pred             cCCcCchh
Confidence            99987654

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=96.53  E-value=0.0025  Score=62.95  Aligned_cols=63  Identities=19%  Similarity=0.252  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccchhhc
Q 010623          163 RFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSL  229 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~~l  229 (506)
                      .+..++.+.+++.|+..+...+|.++.-+++++.||.+  +||++  ++++.||-=.+.|-+.-+.+
T Consensus       265 avs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L--~dG~e--v~sk~VvSNAt~~~Tf~kLl  327 (561)
T KOG4254|consen  265 AVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRL--ADGTE--VRSKIVVSNATPWDTFEKLL  327 (561)
T ss_pred             HHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEe--cCCcE--EEeeeeecCCchHHHHHHhC
Confidence            45667888888885554444579999988888888774  67874  56898887777666554444

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.37  E-value=0.04  Score=59.90  Aligned_cols=33  Identities=24%  Similarity=0.325  Sum_probs=29.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      -+|+|||||..|+-+|..+.+.|. +|+++++++
T Consensus       469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~  502 (654)
T PRK12769        469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD  502 (654)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence            479999999999999999999997 699998864

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=96.29  E-value=0.0054  Score=66.77  Aligned_cols=36  Identities=39%  Similarity=0.523  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE   95 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~   95 (506)
                      -..|.|||.||+||++|-.|-+.|+.|+|+||.+..
T Consensus      1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ 1820 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRV 1820 (2142)
T ss_pred             CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCc
Confidence            478999999999999999999999999999998643

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=96.28  E-value=0.047  Score=61.43  Aligned_cols=33  Identities=27%  Similarity=0.420  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      -+|+|||||.+|+-+|..+.+.|.+|+++.+++
T Consensus       448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~  480 (944)
T PRK12779        448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT  480 (944)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence            479999999999999999999999999998873

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=96.25  E-value=0.049  Score=55.36  Aligned_cols=35  Identities=31%  Similarity=0.492  Sum_probs=30.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKD----GRRVHVIERDLSE   95 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~----G~~v~vvE~~~~~   95 (506)
                      .++=|||+|+|+|++|.+|-|.    |-++.|+|+.+.+
T Consensus         3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~   41 (500)
T PF06100_consen    3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVP   41 (500)
T ss_pred             ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCC
Confidence            4678999999999999999986    4699999998643

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.20  E-value=0.06  Score=55.96  Aligned_cols=33  Identities=24%  Similarity=0.262  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      -.|+|||||.+|+-+|..+.+.|. +|+|+++.+
T Consensus       283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~  316 (467)
T TIGR01318       283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD  316 (467)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence            589999999999999999999996 799999874

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=96.20  E-value=0.0037  Score=58.97  Aligned_cols=36  Identities=28%  Similarity=0.454  Sum_probs=30.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHC-CC-cEEEEecCC
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKD-GR-RVHVIERDL   93 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~-G~-~v~vvE~~~   93 (506)
                      ..++.|+|||||-+|++.|.-+.+. |- +|.|+|...
T Consensus        37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e   74 (446)
T KOG3851|consen   37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE   74 (446)
T ss_pred             ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence            4579999999999999999888764 43 899999764

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=96.12  E-value=0.024  Score=59.12  Aligned_cols=39  Identities=33%  Similarity=0.418  Sum_probs=34.2

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCC
Q 010623           57 CPFDADVIVVGAGVAGAALANTLAKD-GRRVHVIERDLSE   95 (506)
Q Consensus        57 ~~~~~dVvIVGgG~aGl~~A~~La~~-G~~v~vvE~~~~~   95 (506)
                      ...+||.||||||-||+.+|..|++. ..+|+|+|+...+
T Consensus        54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            34579999999999999999999986 5799999998654

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=96.07  E-value=0.025  Score=55.81  Aligned_cols=42  Identities=29%  Similarity=0.304  Sum_probs=31.7

Q ss_pred             CEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcc
Q 010623          177 NVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFS  223 (506)
Q Consensus       177 ~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S  223 (506)
                      ++.+..++ |.++..+     .+.+.+.||+..+|..-++|.|+|...
T Consensus       287 ~I~~~~~t~Vk~V~~~-----~I~~~~~~g~~~~iPYG~lVWatG~~~  329 (491)
T KOG2495|consen  287 GIDLDTGTMVKKVTEK-----TIHAKTKDGEIEEIPYGLLVWATGNGP  329 (491)
T ss_pred             cceeecccEEEeecCc-----EEEEEcCCCceeeecceEEEecCCCCC
Confidence            78888886 6666433     255666789888899999999999754

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=96.00  E-value=0.067  Score=53.70  Aligned_cols=29  Identities=38%  Similarity=0.628  Sum_probs=24.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHH----CC--CcEEEE
Q 010623           61 ADVIVVGAGVAGAALANTLAK----DG--RRVHVI   89 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~----~G--~~v~vv   89 (506)
                      -+|+|||||++|+-+|..|++    .|  .+|+|+
T Consensus       146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li  180 (364)
T TIGR03169       146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI  180 (364)
T ss_pred             ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence            489999999999999999985    34  367777

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PLN02852 ferredoxin-NADP+ reductase

Probab=95.90  E-value=0.18  Score=52.30  Aligned_cols=22  Identities=23%  Similarity=0.356  Sum_probs=20.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC
Q 010623           61 ADVIVVGAGVAGAALANTLAKD   82 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~   82 (506)
                      -+|+|||+|.+|+-+|..|.+.
T Consensus       167 k~VvVIGgGnvAlD~Ar~L~~~  188 (491)
T PLN02852        167 DTAVVLGQGNVALDCARILLRP  188 (491)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC
Confidence            5899999999999999998876

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=95.70  E-value=0.012  Score=51.31  Aligned_cols=32  Identities=44%  Similarity=0.616  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .|.|+|||..|.++|..|+++|++|+++.+++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            48999999999999999999999999999874

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=95.70  E-value=0.036  Score=58.54  Aligned_cols=97  Identities=22%  Similarity=0.327  Sum_probs=65.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCcee
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRT  141 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  141 (506)
                      .-+|||||.-||-+|..|...|.++.|++-.+.                     .+..++...                 
T Consensus       147 ~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~---------------------lMerQLD~~-----------------  188 (793)
T COG1251         147 KAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPT---------------------LMERQLDRT-----------------  188 (793)
T ss_pred             CcEEEccchhhhHHHHHHHhCCCceEEEeecch---------------------HHHHhhhhH-----------------
Confidence            469999999999999999999999999986641                     111111110                 


Q ss_pred             eeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecC
Q 010623          142 QISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDG  220 (506)
Q Consensus       142 ~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG  220 (506)
                                            -...|...+++. +++++.++ .+++.. .+++.+  ++++||+.  +.||+||.|+|
T Consensus       189 ----------------------ag~lL~~~le~~-Gi~~~l~~~t~ei~g-~~~~~~--vr~~DG~~--i~ad~VV~a~G  240 (793)
T COG1251         189 ----------------------AGRLLRRKLEDL-GIKVLLEKNTEEIVG-EDKVEG--VRFADGTE--IPADLVVMAVG  240 (793)
T ss_pred             ----------------------HHHHHHHHHHhh-cceeecccchhhhhc-Ccceee--EeecCCCc--ccceeEEEecc
Confidence                                  112455555555 77777775 445444 444444  44778874  56999999999


Q ss_pred             Cccc
Q 010623          221 CFSN  224 (506)
Q Consensus       221 ~~S~  224 (506)
                      .+-.
T Consensus       241 IrPn  244 (793)
T COG1251         241 IRPN  244 (793)
T ss_pred             cccc
Confidence            7653

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=95.69  E-value=0.15  Score=49.46  Aligned_cols=94  Identities=23%  Similarity=0.293  Sum_probs=68.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||-+.+--|+.|++.+-+|+++=|++....                                          
T Consensus       143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra------------------------------------------  180 (305)
T COG0492         143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA------------------------------------------  180 (305)
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc------------------------------------------
Confidence            34999999999999999999999999999988853111                                          


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                               .+.+.+.+.+.+++.+++++ +.++.-++  +.+|++++..|++.++..|.+..+
T Consensus       181 -------------------------~~~~~~~l~~~~~i~~~~~~~i~ei~G~~--v~~v~l~~~~~~~~~~~~~gvf~~  233 (305)
T COG0492         181 -------------------------EEILVERLKKNVKIEVLTNTVVKEILGDD--VEGVVLKNVKGEEKELPVDGVFIA  233 (305)
T ss_pred             -------------------------CHHHHHHHHhcCCeEEEeCCceeEEecCc--cceEEEEecCCceEEEEeceEEEe
Confidence                                     12344455555578888874 88887665  667887765566566667777777


Q ss_pred             cCCc
Q 010623          219 DGCF  222 (506)
Q Consensus       219 dG~~  222 (506)
                      -|..
T Consensus       234 iG~~  237 (305)
T COG0492         234 IGHL  237 (305)
T ss_pred             cCCC
Confidence            6653

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.69  E-value=0.075  Score=52.34  Aligned_cols=148  Identities=18%  Similarity=0.144  Sum_probs=81.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCC-CcEEEEecCCCCCCcccccccccchHH--HHHHhCchhHHhhcccceecceEE
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDG-RRVHVIERDLSEPDRIVGELLQPGGYL--KLIELGLEDCVEQIDAQRVFGYAL  134 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G-~~v~vvE~~~~~~~~~~g~~l~~~~~~--~l~~~g~~~~~~~~~~~~~~~~~~  134 (506)
                      ...+|++.||-||.-|++|+.|..++ .+++.+||.+...-++. ..+....++  .++.|     + ... .+...+.+
T Consensus         3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpG-mllegstlQv~FlkDL-----V-Tl~-~PTs~ySF   74 (436)
T COG3486           3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPG-MLLEGSTLQVPFLKDL-----V-TLV-DPTSPYSF   74 (436)
T ss_pred             CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCC-cccCCccccccchhhh-----c-ccc-CCCCchHH
Confidence            45699999999999999999999876 78999999986554432 112111111  11111     1 000 01111111


Q ss_pred             E----ECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeC-CeEEEEEEEeCCccEE
Q 010623          135 F----KDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEK-GTIKGVQYKTKAGEEL  208 (506)
Q Consensus       135 ~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~-~~v~~v~v~~~~G~~~  208 (506)
                      .    ..++.    +.+-    ......+.|.++.+.+.=.+...  -.+++++ |+++...+ +.....-+.+.+++. 
T Consensus        75 LNYL~~h~RL----y~Fl----~~e~f~i~R~Ey~dY~~Waa~~l--~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~-  143 (436)
T COG3486          75 LNYLHEHGRL----YEFL----NYETFHIPRREYNDYCQWAASQL--PSLRFGEEVTDISSLDGDAVVRLFVVTANGTV-  143 (436)
T ss_pred             HHHHHHcchH----hhhh----hhhcccccHHHHHHHHHHHHhhC--CccccCCeeccccccCCcceeEEEEEcCCCcE-
Confidence            0    00100    0000    00112457778888877666665  3566775 88774332 222222344556654 


Q ss_pred             EEEcCeEEeecCCcccc
Q 010623          209 TAYAPLTIVCDGCFSNL  225 (506)
Q Consensus       209 ~i~a~~vV~AdG~~S~v  225 (506)
                       .+|+-||...|..-.+
T Consensus       144 -y~ar~lVlg~G~~P~I  159 (436)
T COG3486         144 -YRARNLVLGVGTQPYI  159 (436)
T ss_pred             -EEeeeEEEccCCCcCC
Confidence             5699999999976544

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=95.64  E-value=0.014  Score=59.35  Aligned_cols=38  Identities=32%  Similarity=0.544  Sum_probs=29.5

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        57 ~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      |+.++||+|+|-|..-+.+|.+|++.|.+|+.+|+++.
T Consensus         1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~y   38 (438)
T PF00996_consen    1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDY   38 (438)
T ss_dssp             --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSS
T ss_pred             CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCC
Confidence            45689999999999999999999999999999999974

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=95.63  E-value=0.19  Score=52.56  Aligned_cols=34  Identities=32%  Similarity=0.444  Sum_probs=29.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDLS   94 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~~   94 (506)
                      -.|+|||||..|+-+|..+.+.|. +|+++|+.+.
T Consensus       284 k~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~  318 (485)
T TIGR01317       284 KKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK  318 (485)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence            479999999999999888878775 7999998753

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=95.60  E-value=0.13  Score=58.61  Aligned_cols=33  Identities=24%  Similarity=0.358  Sum_probs=28.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCc-EEEEecC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRR-VHVIERD   92 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~-v~vvE~~   92 (506)
                      .-+|+|||||.+|+=+|..+.+.|.+ |+++.++
T Consensus       571 Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr  604 (1006)
T PRK12775        571 GKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRR  604 (1006)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeec
Confidence            35899999999999999999999985 7777765

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=95.54  E-value=0.22  Score=49.76  Aligned_cols=55  Identities=18%  Similarity=0.247  Sum_probs=39.5

Q ss_pred             hHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcc
Q 010623          162 GRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFS  223 (506)
Q Consensus       162 ~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S  223 (506)
                      ..+..+|...+++. +|+++.++ |+++  ++++   ..+...++. .+++||.||.|+|+.|
T Consensus        86 ~sVv~~L~~~l~~~-gV~i~~~~~V~~i--~~~~---~~v~~~~~~-~~~~a~~vIlAtGG~s  141 (376)
T TIGR03862        86 APLLRAWLKRLAEQ-GVQFHTRHRWIGW--QGGT---LRFETPDGQ-STIEADAVVLALGGAS  141 (376)
T ss_pred             HHHHHHHHHHHHHC-CCEEEeCCEEEEE--eCCc---EEEEECCCc-eEEecCEEEEcCCCcc
Confidence            46888999999887 88888885 9998  3332   333333332 2477999999999977

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=95.52  E-value=0.015  Score=52.00  Aligned_cols=32  Identities=34%  Similarity=0.588  Sum_probs=28.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .|.|||+|..|...|..+++.|++|+++|.++
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~   32 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP   32 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            48999999999999999999999999999975

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK13984 putative oxidoreductase; Provisional

Probab=95.49  E-value=0.17  Score=54.51  Aligned_cols=30  Identities=23%  Similarity=0.471  Sum_probs=25.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC------cEEEEe
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR------RVHVIE   90 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~------~v~vvE   90 (506)
                      -+|+|||||..|+-+|..|++.|.      +|+++.
T Consensus       419 k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~  454 (604)
T PRK13984        419 RSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS  454 (604)
T ss_pred             CcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence            589999999999999999998763      566653

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=95.46  E-value=0.063  Score=57.21  Aligned_cols=62  Identities=18%  Similarity=0.255  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEeecCCcccc
Q 010623          163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL  225 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~v  225 (506)
                      .+...|.+.+.+. ++++..++ ++++..+++++.||.+.+ .+|+...++|+.||.|+|+++.+
T Consensus       120 ~i~~~L~~~~~~~-gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~~  183 (565)
T TIGR01816       120 AILHTLYQQNLKA-DTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGYGRI  183 (565)
T ss_pred             HHHHHHHHHHHhC-CCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCcccc
Confidence            5788898888876 78888775 999998888999998754 57887789999999999999864

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.35  E-value=0.23  Score=47.84  Aligned_cols=85  Identities=27%  Similarity=0.357  Sum_probs=64.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD  137 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  137 (506)
                      -..-||.|||||-+|.-+|+.|+--=-.|+|+|=.++.                                          
T Consensus       352 F~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eL------------------------------------------  389 (520)
T COG3634         352 FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEL------------------------------------------  389 (520)
T ss_pred             cCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhh------------------------------------------
Confidence            34579999999999999999998655579999866421                                          


Q ss_pred             CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeC-CccEEE
Q 010623          138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTK-AGEELT  209 (506)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~-~G~~~~  209 (506)
                                               +-.+.|.+.+.+.+++++..+. -+++.-++++|+|..+.+. +|+...
T Consensus       390 -------------------------kAD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~  438 (520)
T COG3634         390 -------------------------KADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHH  438 (520)
T ss_pred             -------------------------hhHHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCceeE
Confidence                                     1234667777888899998884 7888888889999888774 555443

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.28  E-value=0.022  Score=52.80  Aligned_cols=57  Identities=26%  Similarity=0.464  Sum_probs=41.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCc-----cccc--ccccchHHHHHHhCch
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDR-----IVGE--LLQPGGYLKLIELGLE  118 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~-----~~g~--~l~~~~~~~l~~~g~~  118 (506)
                      +++|||+|..|.+.|..|++.|++|+++|+++..-..     ....  .....-...|+++|+.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~   65 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGID   65 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCC
Confidence            6899999999999999999999999999998643211     1111  1223335677787775

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.21  E-value=0.022  Score=59.15  Aligned_cols=33  Identities=36%  Similarity=0.409  Sum_probs=30.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      .|+|||.|++|+++|..|++.|++|++.|+.+.
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~   34 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS   34 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            589999999999999999999999999998854

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.13  E-value=0.037  Score=57.87  Aligned_cols=33  Identities=39%  Similarity=0.551  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      -+|+|||+|++|+.+|..|+++|++|+++|+.+
T Consensus        17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            479999999999999999999999999999774

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=95.13  E-value=0.11  Score=52.29  Aligned_cols=33  Identities=30%  Similarity=0.586  Sum_probs=27.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEecC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR--RVHVIERD   92 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~   92 (506)
                      ...|+|||||++|..|+..+.+.|.  +.+++-+.
T Consensus        74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~  108 (478)
T KOG1336|consen   74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKRE  108 (478)
T ss_pred             cceEEEEcCCchhhhhHhhHHhhCCCcceEEEecc
Confidence            4689999999999999999999886  56666544

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=95.09  E-value=0.023  Score=50.98  Aligned_cols=33  Identities=33%  Similarity=0.526  Sum_probs=26.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +.|.|||.|-.||.+|..||+.|++|+.+|.++
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~   33 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE   33 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence            368999999999999999999999999999885

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>TIGR02053 MerA mercuric reductase

Probab=94.97  E-value=0.04  Score=57.31  Aligned_cols=34  Identities=29%  Similarity=0.559  Sum_probs=32.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~  200 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDR  200 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc
Confidence            5899999999999999999999999999999864

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.92  E-value=0.31  Score=52.89  Aligned_cols=33  Identities=21%  Similarity=0.162  Sum_probs=29.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      -+|+|||||..|+-+|..+.+.|. +|+++++++
T Consensus       452 k~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~  485 (639)
T PRK12809        452 KRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRD  485 (639)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            589999999999999999889995 799998864

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=94.81  E-value=0.39  Score=54.08  Aligned_cols=34  Identities=29%  Similarity=0.411  Sum_probs=30.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC-CC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKD-GR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~-G~-~v~vvE~~~   93 (506)
                      .-+|+|||||.+|+-+|..+.+. |. +|++++++.
T Consensus       666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~  701 (1012)
T TIGR03315       666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT  701 (1012)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence            46899999999999999998886 86 799999874

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=94.74  E-value=0.048  Score=47.02  Aligned_cols=31  Identities=32%  Similarity=0.656  Sum_probs=29.2

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           63 VIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        63 VvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      |+|+|+|..|+..|..|++.|.+|.++.|..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            7899999999999999999999999999873

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=94.44  E-value=0.044  Score=53.64  Aligned_cols=32  Identities=34%  Similarity=0.585  Sum_probs=30.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +|.|||+|..|.+.|..|+++|++|+++|+++
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~   35 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP   35 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence            69999999999999999999999999999985

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=94.11  E-value=0.078  Score=48.34  Aligned_cols=32  Identities=34%  Similarity=0.492  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      -.|+|||||.+|..-+..|.+.|.+|+|++..
T Consensus        10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~   41 (205)
T TIGR01470        10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEE   41 (205)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            48999999999999999999999999999875

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=94.09  E-value=0.074  Score=51.94  Aligned_cols=34  Identities=35%  Similarity=0.452  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..+|+|+|+|..|...|..|++.|.+|+++.|..
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            3579999999999999999999999999999963

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=94.08  E-value=0.081  Score=46.65  Aligned_cols=34  Identities=32%  Similarity=0.360  Sum_probs=30.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +..|+|+|+|.+|..||..|...|++|+++|..+
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            4799999999999999999999999999999874

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=94.00  E-value=0.085  Score=51.72  Aligned_cols=34  Identities=26%  Similarity=0.441  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..+|+|||+|..|...|..|++.|++|+++.|+.
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            3689999999999999999999999999999863

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=93.92  E-value=0.23  Score=53.01  Aligned_cols=35  Identities=29%  Similarity=0.400  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      +-+|+|+|.|..|-.+|..|.++|++|+++|++++
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~  451 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT  451 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence            57899999999999999999999999999999853

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=93.90  E-value=0.73  Score=51.83  Aligned_cols=34  Identities=29%  Similarity=0.434  Sum_probs=29.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC-C-CcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKD-G-RRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~-G-~~v~vvE~~~   93 (506)
                      .-+|+|||||.+|+-+|..+.+. | .+|+++.+++
T Consensus       668 GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~  703 (1019)
T PRK09853        668 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT  703 (1019)
T ss_pred             CCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence            35899999999999999998887 5 3899999874

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=93.82  E-value=0.091  Score=45.69  Aligned_cols=31  Identities=26%  Similarity=0.369  Sum_probs=28.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEec
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIER   91 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~   91 (506)
                      -.|+|||||..|..-|..|.+.|.+|+|+.+
T Consensus        14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp   44 (157)
T PRK06719         14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSP   44 (157)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence            5899999999999999999999999999953

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.81  E-value=0.074  Score=51.43  Aligned_cols=33  Identities=33%  Similarity=0.396  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..|.|||+|..|...|..|+++|++|+++|+++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD   36 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            369999999999999999999999999999874

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.75  E-value=0.088  Score=51.08  Aligned_cols=33  Identities=30%  Similarity=0.361  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..|.|||+|..|...|..|+++|++|+++|+++
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA   37 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            469999999999999999999999999999874

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=93.75  E-value=0.1  Score=47.45  Aligned_cols=33  Identities=30%  Similarity=0.508  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERD   92 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~   92 (506)
                      ...|+|||+|-.|...|..|++.|+ +++|+|.+
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            4789999999999999999999999 69999988

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=93.73  E-value=2.7  Score=42.78  Aligned_cols=53  Identities=21%  Similarity=0.137  Sum_probs=34.9

Q ss_pred             HHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcc
Q 010623          166 QRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFS  223 (506)
Q Consensus       166 ~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S  223 (506)
                      +.|.+.+++. +.+++.+ +|+++..+++++. +.+. .+|+  ++.||.||.|.-...
T Consensus       201 ~~l~~~l~~~-g~~i~~~~~V~~i~~~~~~~~-~~~~-~~g~--~~~~d~vi~a~p~~~  254 (419)
T TIGR03467       201 EPARRWLDSR-GGEVRLGTRVRSIEANAGGIR-ALVL-SGGE--TLPADAVVLAVPPRH  254 (419)
T ss_pred             HHHHHHHHHc-CCEEEcCCeeeEEEEcCCcce-EEEe-cCCc--cccCCEEEEcCCHHH
Confidence            3356666666 5577777 5999998877543 3333 3554  366999999876554

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=93.65  E-value=0.08  Score=44.74  Aligned_cols=32  Identities=34%  Similarity=0.435  Sum_probs=28.2

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           63 VIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        63 VvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      ++|+|+|+.+.++|..++..|++|+|+|.+++
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            58999999999999999999999999998864

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.64  E-value=0.077  Score=51.25  Aligned_cols=33  Identities=42%  Similarity=0.493  Sum_probs=31.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      .|.|||+|..|...|..+++.|++|+++|++++
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   39 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE   39 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            799999999999999999999999999999864

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.61  E-value=0.085  Score=54.66  Aligned_cols=33  Identities=45%  Similarity=0.614  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      -.|+|+|+|.+|+++|..|++.|++|+++|+..
T Consensus         6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            579999999999999999999999999999874

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.60  E-value=0.08  Score=51.25  Aligned_cols=32  Identities=31%  Similarity=0.550  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .|.|||+|..|...|..|+++|++|+++|+++
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   34 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ   34 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence            58999999999999999999999999999885

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=93.59  E-value=0.086  Score=51.89  Aligned_cols=33  Identities=27%  Similarity=0.439  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ++|.|||.|-+||+.|..|++.|++|+.+|.++
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~   33 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE   33 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence            368999999999999999999999999999985

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=93.52  E-value=0.12  Score=49.03  Aligned_cols=34  Identities=38%  Similarity=0.543  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      +..|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus        30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~   64 (268)
T PRK15116         30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD   64 (268)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            3799999999999999999999996 899999874

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.49  E-value=0.091  Score=51.37  Aligned_cols=32  Identities=19%  Similarity=0.284  Sum_probs=30.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .|.|||+|..|...|..++.+|++|+++|..+
T Consensus         9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~   40 (321)
T PRK07066          9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAP   40 (321)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            69999999999999999999999999999885

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=93.46  E-value=0.063  Score=43.03  Aligned_cols=33  Identities=36%  Similarity=0.515  Sum_probs=30.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      .-.|+|||||..|..-+..|.+.|.+|+|+.+.
T Consensus         7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~   39 (103)
T PF13241_consen    7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPE   39 (103)
T ss_dssp             T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence            368999999999999999999999999999887

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=93.43  E-value=0.11  Score=42.48  Aligned_cols=31  Identities=39%  Similarity=0.650  Sum_probs=28.4

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           63 VIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        63 VvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      |+|+|.|..|..+|..|.+.+.+|+++|+++
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~   31 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP   31 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence            7999999999999999999888999999985

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=93.40  E-value=0.095  Score=51.07  Aligned_cols=32  Identities=28%  Similarity=0.561  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +|+|||+|..|...|..|++.|++|++++|++
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~   33 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG   33 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence            58999999999999999999999999999863

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=93.38  E-value=0.1  Score=50.89  Aligned_cols=30  Identities=37%  Similarity=0.650  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEec
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIER   91 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~   91 (506)
                      +|+|+|+|..|.+.|..|++.|++|++++|
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            599999999999999999999999999998

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=93.30  E-value=0.9  Score=41.15  Aligned_cols=102  Identities=23%  Similarity=0.254  Sum_probs=72.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-..+|||||=+-+-=|++|.+.+-+|.++-|++..                 +                          
T Consensus       157 nk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~f-----------------R--------------------------  193 (322)
T KOG0404|consen  157 NKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHF-----------------R--------------------------  193 (322)
T ss_pred             CCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhh-----------------h--------------------------
Confidence            456889999999999999999999999999887421                 0                          


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEe
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIV  217 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~  217 (506)
                                              -...+.+++.+.+++++.+++ +++..-+.+.+.++++++ .+|++.++..+-+.-
T Consensus       194 ------------------------As~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf  249 (322)
T KOG0404|consen  194 ------------------------ASKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFF  249 (322)
T ss_pred             ------------------------HHHHHHHHHhcCCCeEEEechhhhhhccCcccccceEEEecccCcccccccceeEE
Confidence                                    112556677777889888886 566655555555677765 567766677777777


Q ss_pred             ecCCcccchhhc
Q 010623          218 CDGCFSNLRRSL  229 (506)
Q Consensus       218 AdG~~S~vR~~l  229 (506)
                      +-| ||+--+.+
T Consensus       250 ~IG-H~Pat~~l  260 (322)
T KOG0404|consen  250 AIG-HSPATKFL  260 (322)
T ss_pred             Eec-CCchhhHh
Confidence            766 44444444

>TIGR00518 alaDH alanine dehydrogenase

Probab=93.29  E-value=0.11  Score=52.06  Aligned_cols=34  Identities=26%  Similarity=0.516  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..+|+|+|+|.+|+.+|..|.+.|.+|+++|+++
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            3579999999999999999999999999999874

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=93.28  E-value=0.092  Score=54.51  Aligned_cols=34  Identities=35%  Similarity=0.463  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .-+|+|+|+|++|+.++..+...|.+|+++|.++
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~  198 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP  198 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5799999999999999999999999999999874

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=93.28  E-value=0.096  Score=50.77  Aligned_cols=32  Identities=31%  Similarity=0.538  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .|.|||+|..|...|..|+++|++|+++|+++
T Consensus         5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (291)
T PRK06035          5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE   36 (291)
T ss_pred             EEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            59999999999999999999999999999875

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=93.21  E-value=0.11  Score=52.46  Aligned_cols=34  Identities=35%  Similarity=0.427  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .-.|+|+|+|+.|+.+|..|+..|.+|+++|.++
T Consensus       202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~  235 (413)
T cd00401         202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP  235 (413)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            4589999999999999999999999999999875

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=93.20  E-value=0.13  Score=43.53  Aligned_cols=34  Identities=29%  Similarity=0.726  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      +..|+|+|+|..|...|..|++.|+ +++|+|.+.
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            3689999999999999999999999 799999874

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=93.16  E-value=0.097  Score=47.50  Aligned_cols=34  Identities=35%  Similarity=0.581  Sum_probs=29.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .-+|+|||+|.++.-+|..|++.|.+|+++=|.+
T Consensus       167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~  200 (203)
T PF13738_consen  167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP  200 (203)
T ss_dssp             TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred             CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence            4789999999999999999999999999999875

...

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=93.14  E-value=0.18  Score=42.63  Aligned_cols=33  Identities=36%  Similarity=0.595  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCc-EEEEecC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRR-VHVIERD   92 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~-v~vvE~~   92 (506)
                      .-.|+|||+|-+|-+++..|+..|.+ ++|+-|.
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt   45 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT   45 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            46899999999999999999999997 9999887

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=92.97  E-value=0.34  Score=51.08  Aligned_cols=34  Identities=32%  Similarity=0.476  Sum_probs=29.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .-+|+|||+|.+|.=.|..|++...+|.+.-|+.
T Consensus       183 gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~  216 (531)
T PF00743_consen  183 GKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG  216 (531)
T ss_dssp             TSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred             CCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence            3589999999999999999999999999988874

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=92.91  E-value=0.17  Score=46.04  Aligned_cols=32  Identities=34%  Similarity=0.470  Sum_probs=29.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      -.|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus        11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718         11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            58999999999999999999999999999754

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.85  E-value=0.12  Score=49.82  Aligned_cols=33  Identities=27%  Similarity=0.411  Sum_probs=30.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      +|.|||+|..|...|..++++|++|+++|.++.
T Consensus         5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~   37 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA   37 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence            699999999999999999999999999998753

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=92.67  E-value=0.59  Score=52.08  Aligned_cols=32  Identities=13%  Similarity=0.102  Sum_probs=25.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHH---CCCcEEEEecC
Q 010623           61 ADVIVVGAGVAGAALANTLAK---DGRRVHVIERD   92 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~---~G~~v~vvE~~   92 (506)
                      -+|+|||||.+|+=+|..+.+   .+..+.+.+..
T Consensus       551 k~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~  585 (1028)
T PRK06567        551 MPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYI  585 (1028)
T ss_pred             CCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhh
Confidence            579999999999999986654   46777777764

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=92.52  E-value=0.17  Score=49.39  Aligned_cols=33  Identities=27%  Similarity=0.473  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC--cEEEEecCCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGR--RVHVIERDLS   94 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~~   94 (506)
                      +|.|||+|.+|.++|+.|++.|+  .+.++|++..
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~   36 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA   36 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence            69999999999999999999994  8999998753

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=92.45  E-value=0.19  Score=49.71  Aligned_cols=34  Identities=38%  Similarity=0.701  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      +..|+|||+|-.|..+|..|++.|+ +++|+|++.
T Consensus        24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            4689999999999999999999999 899999985

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=92.44  E-value=0.18  Score=50.12  Aligned_cols=32  Identities=41%  Similarity=0.590  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      .+|.|||+|..|...|..|++.|++|+++++.
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~   34 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA   34 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence            46999999999999999999999999999985

>PRK04148 hypothetical protein; Provisional

Probab=92.40  E-value=0.14  Score=42.91  Aligned_cols=32  Identities=25%  Similarity=0.328  Sum_probs=29.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..|++||.| .|...|..|++.|++|+.+|.++
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~   49 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINE   49 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCH
Confidence            479999999 99999999999999999999885

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=92.12  E-value=1.9  Score=43.03  Aligned_cols=116  Identities=18%  Similarity=0.186  Sum_probs=69.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG  138 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (506)
                      .+-.|+|+|.|=+|.++.-.|-..-++|+|+..+....       +.|    +|         .                
T Consensus        54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFl-------FTP----LL---------p----------------   97 (491)
T KOG2495|consen   54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFL-------FTP----LL---------P----------------   97 (491)
T ss_pred             CCceEEEEcCchHHHHHHHhccccccceEEeccccceE-------Eee----cc---------C----------------
Confidence            46799999999999999888877788999997663100       000    00         0                


Q ss_pred             ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHc-CCCEEEEeceEEEEEeeCCeEEEEEEEeCCc--cEEEEEcCeE
Q 010623          139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAAS-LPNVRLEQGTVTSLLEEKGTIKGVQYKTKAG--EELTAYAPLT  215 (506)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~-~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G--~~~~i~a~~v  215 (506)
                                   ..+.| .++-..+.+-.+..++. .+++.++....+++..+...|. +...++++  .+..+.+||+
T Consensus        98 -------------S~~vG-Tve~rSIvEPIr~i~r~k~~~~~y~eAec~~iDp~~k~V~-~~s~t~~~~~~e~~i~YDyL  162 (491)
T KOG2495|consen   98 -------------STTVG-TVELRSIVEPIRAIARKKNGEVKYLEAECTKIDPDNKKVH-CRSLTADSSDKEFVIGYDYL  162 (491)
T ss_pred             -------------Ccccc-ceeehhhhhhHHHHhhccCCCceEEecccEeecccccEEE-EeeeccCCCcceeeecccEE
Confidence                         00000 11111122222222222 3367777777888877766543 44444444  4567889999


Q ss_pred             EeecCCcccc
Q 010623          216 IVCDGCFSNL  225 (506)
Q Consensus       216 V~AdG~~S~v  225 (506)
                      |.|.|+...+
T Consensus       163 ViA~GA~~~T  172 (491)
T KOG2495|consen  163 VIAVGAEPNT  172 (491)
T ss_pred             EEeccCCCCC
Confidence            9999998865

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=92.07  E-value=0.24  Score=46.40  Aligned_cols=34  Identities=29%  Similarity=0.476  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      ..+|+|||+|..|..+|..|++.|+ +++++|.+.
T Consensus        24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~   58 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT   58 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence            4799999999999999999999998 889999874

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=92.05  E-value=0.25  Score=44.94  Aligned_cols=34  Identities=29%  Similarity=0.524  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      +..|+|||.|..|..+|..|++.|+ +++++|.+.
T Consensus        21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~   55 (202)
T TIGR02356        21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH   55 (202)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence            5799999999999999999999998 899999874

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=92.05  E-value=0.23  Score=49.04  Aligned_cols=34  Identities=35%  Similarity=0.727  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      +..|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            4789999999999999999999999 999999974

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=91.94  E-value=0.25  Score=48.14  Aligned_cols=33  Identities=27%  Similarity=0.358  Sum_probs=29.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      ..|.|||+|..|...|+.|+.+|+ +|+++|...
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~   35 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE   35 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            479999999999999999999887 899999853

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.91  E-value=0.23  Score=48.57  Aligned_cols=33  Identities=27%  Similarity=0.521  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..|.|||+|..|.+.|..|++.|++|+++|+++
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~   37 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME   37 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            369999999999999999999999999999874

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=91.75  E-value=0.3  Score=42.95  Aligned_cols=33  Identities=30%  Similarity=0.386  Sum_probs=30.2

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHHCCCcEEEEecC
Q 010623           60 DADVIVVGAGV-AGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        60 ~~dVvIVGgG~-aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      ..+|+|||+|- +|..+|..|.++|.+|+++.|.
T Consensus        44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            47999999996 6999999999999999999986

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK10537 voltage-gated potassium channel; Provisional

Probab=91.73  E-value=0.98  Score=45.57  Aligned_cols=33  Identities=21%  Similarity=0.190  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      +-+|+|+|.|..|-..+..|.++|.+|+++|++
T Consensus       240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d  272 (393)
T PRK10537        240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPL  272 (393)
T ss_pred             CCeEEEECCChHHHHHHHHHHHCCCCEEEEECc
Confidence            358999999999999999999999999999976

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=91.72  E-value=0.28  Score=48.49  Aligned_cols=33  Identities=39%  Similarity=0.435  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..|.|||+|..|.+.|..|++.|++|++++|++
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~   37 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP   37 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            479999999999999999999999999999964

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=91.72  E-value=0.22  Score=50.91  Aligned_cols=34  Identities=21%  Similarity=0.336  Sum_probs=31.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      ..|.|||.|-.|+.+|..|+++|++|+++|+++.
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~   37 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH   37 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence            4699999999999999999999999999998753

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=91.65  E-value=0.24  Score=48.85  Aligned_cols=32  Identities=28%  Similarity=0.443  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +|.|||+|..|.+.|..|++.|++|.++.|++
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            58999999999999999999999999999864

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=91.64  E-value=0.29  Score=45.97  Aligned_cols=36  Identities=31%  Similarity=0.362  Sum_probs=33.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      ....++|+|||+.+..+|..++..|++|+|+|.++.
T Consensus        99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~  134 (246)
T TIGR02964        99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA  134 (246)
T ss_pred             CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            458999999999999999999999999999997754

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=91.58  E-value=0.34  Score=41.27  Aligned_cols=33  Identities=33%  Similarity=0.533  Sum_probs=29.7

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHCCC--cEEEEecCC
Q 010623           61 ADVIVVGA-GVAGAALANTLAKDGR--RVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGg-G~aGl~~A~~La~~G~--~v~vvE~~~   93 (506)
                      .+|.|||+ |..|.++|+.|...++  ++.|+|...
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~   36 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE   36 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence            37999999 9999999999999886  699999884

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=91.55  E-value=0.31  Score=43.19  Aligned_cols=32  Identities=31%  Similarity=0.528  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      .|+|||+|..|...|..|++.|+ +++++|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            48999999999999999999999 599999874

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=91.37  E-value=0.34  Score=47.11  Aligned_cols=36  Identities=31%  Similarity=0.456  Sum_probs=34.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE   95 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~   95 (506)
                      .+||+|+|-|+.=+.++..|+..|.+|+.+||++.-
T Consensus         6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~Y   41 (434)
T COG5044           6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYY   41 (434)
T ss_pred             cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCcc
Confidence            699999999999999999999999999999999753

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=91.36  E-value=0.28  Score=47.65  Aligned_cols=32  Identities=38%  Similarity=0.518  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .|.|||+|..|...|..|++.|++|+++|+++
T Consensus         6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~   37 (295)
T PLN02545          6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP   37 (295)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            59999999999999999999999999999875

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=91.35  E-value=0.31  Score=45.86  Aligned_cols=34  Identities=35%  Similarity=0.490  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      +.+|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus        32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   66 (245)
T PRK05690         32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT   66 (245)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            4799999999999999999999998 899999874

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=91.31  E-value=0.35  Score=44.40  Aligned_cols=34  Identities=32%  Similarity=0.544  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      ...|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus        28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~   62 (212)
T PRK08644         28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV   62 (212)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            4799999999999999999999999 599999874

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=91.31  E-value=0.22  Score=50.89  Aligned_cols=33  Identities=33%  Similarity=0.484  Sum_probs=30.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      +|.|||.|..|+.+|..|++.|++|+++|+++.
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~   34 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE   34 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence            589999999999999999999999999998753

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK08328 hypothetical protein; Provisional

Probab=91.31  E-value=0.32  Score=45.30  Aligned_cols=34  Identities=38%  Similarity=0.542  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      +..|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~   61 (231)
T PRK08328         27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT   61 (231)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            4689999999999999999999998 788998774

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=91.18  E-value=0.25  Score=49.29  Aligned_cols=32  Identities=34%  Similarity=0.382  Sum_probs=27.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      .|+|+|+||.||.++..++..|. +|+++|+++
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~  203 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP  203 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence            69999999999999999999996 666667764

>TIGR00936 ahcY adenosylhomocysteinase

Probab=91.15  E-value=0.28  Score=49.48  Aligned_cols=35  Identities=34%  Similarity=0.374  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      .-.|+|+|.|+.|..+|..|+..|.+|+++|.++.
T Consensus       195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~  229 (406)
T TIGR00936       195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI  229 (406)
T ss_pred             cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence            45899999999999999999999999999998763

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=91.05  E-value=0.35  Score=47.30  Aligned_cols=33  Identities=33%  Similarity=0.550  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .+|.|||+|-.|.+.|..|++.|++|++++|+.
T Consensus         5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~   37 (308)
T PRK14619          5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRS   37 (308)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            579999999999999999999999999999875

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=90.99  E-value=0.35  Score=44.95  Aligned_cols=34  Identities=38%  Similarity=0.626  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      +..|+|||+|..|...|..|++.|+ +++|+|.+.
T Consensus        21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            4799999999999999999999998 889998874

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=90.92  E-value=0.39  Score=40.93  Aligned_cols=32  Identities=34%  Similarity=0.598  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      .|+|||+|-.|...|..|++.|+ +++++|.+.
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            48999999999999999999999 799999874

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=90.82  E-value=0.97  Score=48.61  Aligned_cols=34  Identities=35%  Similarity=0.616  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +.+|+|+|.|..|-..|..|.++|++++++|+++
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~  433 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDI  433 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCH
Confidence            4689999999999999999999999999999985

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=90.75  E-value=0.45  Score=46.71  Aligned_cols=35  Identities=14%  Similarity=0.253  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~~   94 (506)
                      ...|.|||+|-.|.+.|+.++..|+ +++|+|.++.
T Consensus         6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~   41 (321)
T PTZ00082          6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN   41 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence            3689999999999999999999996 9999998764

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=90.73  E-value=1.1  Score=45.44  Aligned_cols=33  Identities=30%  Similarity=0.529  Sum_probs=27.0

Q ss_pred             EEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCC
Q 010623           63 VIVVGAGVAGAALANTLAKD--GRRVHVIERDLSE   95 (506)
Q Consensus        63 VvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~~~   95 (506)
                      ++|||+|++|+++|..|.+.  +.+++++.+.+..
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~   35 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKY   35 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCC
Confidence            58999999999999998885  4578877777543

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=90.63  E-value=0.34  Score=46.67  Aligned_cols=32  Identities=41%  Similarity=0.603  Sum_probs=30.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERD   92 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~   92 (506)
                      ..|+|+|+|-+|.++|..|++.|+ +++|++|.
T Consensus       128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~  160 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD  160 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence            579999999999999999999998 79999987

>PRK08223 hypothetical protein; Validated

Probab=90.50  E-value=0.41  Score=45.75  Aligned_cols=34  Identities=26%  Similarity=0.397  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      +..|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~   61 (287)
T PRK08223         27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV   61 (287)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            4799999999999999999999998 899999874

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=90.46  E-value=0.35  Score=50.24  Aligned_cols=34  Identities=26%  Similarity=0.369  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      .-+|+|||||.+|+-+|..|++.|. +|+++++++
T Consensus       273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~  307 (457)
T PRK11749        273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG  307 (457)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            4589999999999999999999998 899999864

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=90.46  E-value=0.43  Score=44.31  Aligned_cols=34  Identities=38%  Similarity=0.591  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      +..|+|||.|-.|..+|..|++.|+ +++|+|.+.
T Consensus        11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~   45 (231)
T cd00755          11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV   45 (231)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            4789999999999999999999998 899999874

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=90.43  E-value=0.36  Score=50.51  Aligned_cols=33  Identities=24%  Similarity=0.370  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..|.|||+|..|...|..|+++|++|+++|+++
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~   37 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP   37 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            369999999999999999999999999999975

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=90.43  E-value=0.4  Score=49.77  Aligned_cols=34  Identities=35%  Similarity=0.455  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ...|+|+|+|++|+.++..+...|.+|+++|+++
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~  197 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP  197 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4799999999999999999999999999999874

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=90.38  E-value=0.34  Score=43.80  Aligned_cols=34  Identities=29%  Similarity=0.492  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .-.|.|||||..|...|.-.+..|++|.|+|++.
T Consensus        11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~   44 (298)
T KOG2304|consen   11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANE   44 (298)
T ss_pred             ccceEEEcccccchhHHHHHHhcCCceEEecCCH
Confidence            4589999999999999999999999999999985

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=90.36  E-value=0.44  Score=43.20  Aligned_cols=34  Identities=32%  Similarity=0.662  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      +..|+|||+|..|...|..|++.|+ +++++|.+.
T Consensus        19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~   53 (198)
T cd01485          19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL   53 (198)
T ss_pred             hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            4799999999999999999999999 599999874

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=90.27  E-value=0.4  Score=47.21  Aligned_cols=32  Identities=44%  Similarity=0.632  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +|.|||+|..|...|..|++.|++|+++++++
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            69999999999999999999999999999874

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.26  E-value=0.33  Score=50.83  Aligned_cols=32  Identities=44%  Similarity=0.637  Sum_probs=29.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      -.|+|+|.|++|++++..|.+.|.+|++.|+.
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~   44 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDD   44 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            47999999999999999999999999999965

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=90.21  E-value=0.29  Score=46.49  Aligned_cols=34  Identities=29%  Similarity=0.516  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +-+|+|+|||.+|.-+|..+...|.+|+++|.+.
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~  201 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI  201 (371)
T ss_pred             CccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence            4799999999999999999999999999999984

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=90.21  E-value=0.37  Score=46.39  Aligned_cols=32  Identities=28%  Similarity=0.393  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +|.|||.|..|.+.|..|+++|++|.++++++
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999999999999999864

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=90.08  E-value=0.45  Score=44.45  Aligned_cols=35  Identities=31%  Similarity=0.391  Sum_probs=30.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC-----------CcEEEEecCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDG-----------RRVHVIERDL   93 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G-----------~~v~vvE~~~   93 (506)
                      .+.+|+|||+|-.|..++..|++.|           .+++|+|.+.
T Consensus        10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~   55 (244)
T TIGR03736        10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT   55 (244)
T ss_pred             CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence            3589999999999999999999974           3889999874

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=90.02  E-value=0.44  Score=46.20  Aligned_cols=34  Identities=38%  Similarity=0.497  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..+|+|+|.|.+|..+|..|++.|.+|+++++++
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~  185 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS  185 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4689999999999999999999999999999984

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=90.01  E-value=0.34  Score=50.64  Aligned_cols=34  Identities=32%  Similarity=0.500  Sum_probs=31.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      ..|.|||+|..|...|..|++.|++|+++|++++
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e   39 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE   39 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4699999999999999999999999999999854

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK06223 malate dehydrogenase; Reviewed

Probab=89.99  E-value=0.47  Score=46.37  Aligned_cols=34  Identities=29%  Similarity=0.371  Sum_probs=30.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDLS   94 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~~   94 (506)
                      .+|.|||+|..|.+.|..++..|+ +++++|.+++
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~   37 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG   37 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence            479999999999999999999876 9999999643

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=89.97  E-value=0.38  Score=41.64  Aligned_cols=33  Identities=39%  Similarity=0.536  Sum_probs=27.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      -.++|+|=|-.|-.+|..|+..|.+|+|.|.+|
T Consensus        24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP   56 (162)
T PF00670_consen   24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDP   56 (162)
T ss_dssp             SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred             CEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence            479999999999999999999999999999986

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>TIGR02730 carot_isom carotene isomerase

Probab=89.93  E-value=0.91  Score=47.63  Aligned_cols=36  Identities=42%  Similarity=0.605  Sum_probs=33.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP   96 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~   96 (506)
                      +||+|||||++||++|..|+++|++|+|+||++.+.
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~G   36 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPG   36 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCC
Confidence            699999999999999999999999999999997643

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=89.92  E-value=0.48  Score=43.93  Aligned_cols=33  Identities=30%  Similarity=0.558  Sum_probs=30.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCc---EEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRR---VHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~---v~vvE~~~   93 (506)
                      ..|+|+|+|-+|...|..|.+.|.+   +.|++|..
T Consensus        26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g   61 (226)
T cd05311          26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG   61 (226)
T ss_pred             CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence            5899999999999999999999985   99999973

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=89.89  E-value=0.5  Score=42.82  Aligned_cols=34  Identities=21%  Similarity=0.427  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      +..|+|||+|..|...|..|++.|+ +++++|.+.
T Consensus        21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~   55 (197)
T cd01492          21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT   55 (197)
T ss_pred             hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            4799999999999999999999999 689999874

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=89.80  E-value=0.42  Score=48.49  Aligned_cols=35  Identities=37%  Similarity=0.366  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      .-.|+|+|.|..|..+|..|+..|.+|+++|+++.
T Consensus       212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~  246 (425)
T PRK05476        212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI  246 (425)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence            45799999999999999999999999999998753

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=89.73  E-value=0.43  Score=48.20  Aligned_cols=32  Identities=19%  Similarity=0.275  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      +|.|||.|-.|+.+|..++. |++|+++|+++.
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~   33 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS   33 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence            58999999999999998885 999999999853

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.65  E-value=0.41  Score=49.55  Aligned_cols=32  Identities=34%  Similarity=0.387  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .|+|+|+|.+|+++|..|++.|.+|++.|+..
T Consensus         7 ~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          7 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             EEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            68999999999999999999999999999764

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=89.57  E-value=0.43  Score=49.37  Aligned_cols=33  Identities=21%  Similarity=0.381  Sum_probs=29.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKD--GRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~   93 (506)
                      ++|.|||.|-.|+.+|..|+++  |++|+.+|.++
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~   36 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV   36 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence            4699999999999999999988  47899999875

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=89.49  E-value=0.61  Score=45.58  Aligned_cols=34  Identities=26%  Similarity=0.349  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR--RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~   93 (506)
                      +..|.|||+|-+|.++|+.|+..|+  .+.|+|.+.
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~   38 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE   38 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            4689999999999999999999886  699999874

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=89.48  E-value=0.5  Score=46.12  Aligned_cols=33  Identities=27%  Similarity=0.567  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC--cEEEEecCCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGR--RVHVIERDLS   94 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~~   94 (506)
                      .|.|||+|-+|.++|+.|+..|+  +++++|+++.
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~   36 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE   36 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            58999999999999999999994  7999999753

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.37  E-value=0.51  Score=48.82  Aligned_cols=34  Identities=26%  Similarity=0.507  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      ..|+|+|.|.+|+++|..|+++|.+|++.|..+.
T Consensus         6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~   39 (445)
T PRK04308          6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK   39 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            4799999999999999999999999999997653

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.36  E-value=0.45  Score=49.40  Aligned_cols=33  Identities=33%  Similarity=0.487  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..|+|+|.|.+|+++|..|.+.|++|++.|+++
T Consensus        15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            379999999999999999999999999999875

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=89.27  E-value=0.85  Score=45.11  Aligned_cols=42  Identities=21%  Similarity=0.172  Sum_probs=31.0

Q ss_pred             CCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCc
Q 010623          176 PNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCF  222 (506)
Q Consensus       176 ~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~  222 (506)
                      +|+.++-+ .|.++....++   +.+...||.+  ++.|+||.|.|.-
T Consensus       406 ~GV~V~pna~v~sv~~~~~n---l~lkL~dG~~--l~tD~vVvavG~e  448 (659)
T KOG1346|consen  406 GGVDVRPNAKVESVRKCCKN---LVLKLSDGSE--LRTDLVVVAVGEE  448 (659)
T ss_pred             cCceeccchhhhhhhhhccc---eEEEecCCCe--eeeeeEEEEecCC
Confidence            47877766 47777666553   5577789974  6699999999954

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=89.27  E-value=0.67  Score=45.37  Aligned_cols=34  Identities=26%  Similarity=0.525  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR--RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~   93 (506)
                      ..+|.|||+|-+|.++|+.|+..|+  .+.|+|.+.
T Consensus         6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~   41 (315)
T PRK00066          6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK   41 (315)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            4699999999999999999999998  799999864

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=89.27  E-value=0.48  Score=46.12  Aligned_cols=31  Identities=32%  Similarity=0.415  Sum_probs=28.6

Q ss_pred             EEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           63 VIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        63 VvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      |.|||+|-.|..+|..|+.+|+ +|+++|.++
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e   32 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE   32 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence            5799999999999999999887 999999984

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=89.22  E-value=0.7  Score=44.50  Aligned_cols=105  Identities=21%  Similarity=0.201  Sum_probs=71.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      +-.-+|||||-++|-||-+|+-.|++|+|.=|+--                 |+  |..                     
T Consensus       198 PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~-----------------Lr--GFD---------------------  237 (503)
T KOG4716|consen  198 PGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSIL-----------------LR--GFD---------------------  237 (503)
T ss_pred             CCceEEEccceeeeehhhhHhhcCCCcEEEEEEee-----------------cc--ccc---------------------
Confidence            35689999999999999999999999999877620                 00  111                     


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEe
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIV  217 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~  217 (506)
                                            .++.+.+.+++.+. |+.+.... .+.+++.+++...|.... .+++..+-..|-|+.
T Consensus       238 ----------------------qdmae~v~~~m~~~-Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~  294 (503)
T KOG4716|consen  238 ----------------------QDMAELVAEHMEER-GIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLW  294 (503)
T ss_pred             ----------------------HHHHHHHHHHHHHh-CCceeecccceeeeeccCCcEEEEeecccccccccchhhhhhh
Confidence                                  13445566677777 77777775 677776655433344433 233333334799999


Q ss_pred             ecCCcccchh
Q 010623          218 CDGCFSNLRR  227 (506)
Q Consensus       218 AdG~~S~vR~  227 (506)
                      |-|.-+.+++
T Consensus       295 AiGR~~~~~~  304 (503)
T KOG4716|consen  295 AIGRKALTDD  304 (503)
T ss_pred             hhccccchhh
Confidence            9998887765

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=89.09  E-value=0.52  Score=43.27  Aligned_cols=34  Identities=38%  Similarity=0.543  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      +..|+|||.|-+|..++-+|+|.|+ +.+|+|.+.
T Consensus        30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~   64 (263)
T COG1179          30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDD   64 (263)
T ss_pred             hCcEEEEecCchhHHHHHHHHHcCCCeEEEEeccc
Confidence            3799999999999999999999998 899999985

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=89.01  E-value=0.45  Score=49.90  Aligned_cols=34  Identities=35%  Similarity=0.539  Sum_probs=31.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      -.|.|||+|..|...|..|++.|++|+++|++++
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e   41 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG   41 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            3599999999999999999999999999999864

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=89.01  E-value=0.46  Score=49.19  Aligned_cols=33  Identities=39%  Similarity=0.640  Sum_probs=30.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      +|+|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~   34 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE   34 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence            699999999999999999999999999999753

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=88.98  E-value=0.55  Score=46.87  Aligned_cols=34  Identities=32%  Similarity=0.642  Sum_probs=31.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC-CcEEEEecCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDG-RRVHVIERDLS   94 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G-~~v~vvE~~~~   94 (506)
                      .+|+|+|+|-.|..+|..|+++| .+|++.+|...
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~   36 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE   36 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH
Confidence            47999999999999999999999 89999999853

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=88.81  E-value=0.61  Score=43.03  Aligned_cols=32  Identities=41%  Similarity=0.632  Sum_probs=29.2

Q ss_pred             cEEEEC-CCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVVG-AGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVG-gG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +|.||| +|..|.++|..|++.|++|+++.|++
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~   34 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL   34 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence            589997 69999999999999999999998764

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=88.76  E-value=2.2  Score=42.34  Aligned_cols=134  Identities=16%  Similarity=0.163  Sum_probs=74.5

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHH--HCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEE
Q 010623           57 CPFDADVIVVGAGVAGAALANTLA--KDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYAL  134 (506)
Q Consensus        57 ~~~~~dVvIVGgG~aGl~~A~~La--~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~  134 (506)
                      .+.+...+|||||-+-.+++....  ..+.+|.++-..++.+.      +.|.-.+.|.-.|=..        ....+.+
T Consensus       175 ~p~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPY------mRPPLSKELW~~~dpn--------~~k~lrf  240 (659)
T KOG1346|consen  175 LPKHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPY------MRPPLSKELWWYGDPN--------SAKKLRF  240 (659)
T ss_pred             CcccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcc------cCCCcchhceecCCCC--------hhhheee
Confidence            346789999999988777765554  34678888876654332      1111111111111000        1111111


Q ss_pred             -EECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEc
Q 010623          135 -FKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYA  212 (506)
Q Consensus       135 -~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a  212 (506)
                       -.+|+...+.|.       +.+..++..+|-.+      .+||+.+..++ |+.+..++..|+     .+||.+  |.+
T Consensus       241 kqwsGkeRsiffe-------pd~FfvspeDLp~~------~nGGvAvl~G~kvvkid~~d~~V~-----LnDG~~--I~Y  300 (659)
T KOG1346|consen  241 KQWSGKERSIFFE-------PDGFFVSPEDLPKA------VNGGVAVLRGRKVVKIDEEDKKVI-----LNDGTT--IGY  300 (659)
T ss_pred             cccCCccceeEec-------CCcceeChhHCccc------ccCceEEEeccceEEeecccCeEE-----ecCCcE--eeh
Confidence             012333233322       22334444444322      34789998885 999988877533     678874  669


Q ss_pred             CeEEeecCCccc
Q 010623          213 PLTIVCDGCFSN  224 (506)
Q Consensus       213 ~~vV~AdG~~S~  224 (506)
                      |-.+.|+|..-.
T Consensus       301 dkcLIATG~~Pk  312 (659)
T KOG1346|consen  301 DKCLIATGVRPK  312 (659)
T ss_pred             hheeeecCcCcc
Confidence            999999998754

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=88.76  E-value=0.67  Score=46.44  Aligned_cols=34  Identities=35%  Similarity=0.597  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      +..|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus        41 ~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~   75 (370)
T PRK05600         41 NARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT   75 (370)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            5789999999999999999999998 899999874

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=88.70  E-value=0.72  Score=41.64  Aligned_cols=32  Identities=38%  Similarity=0.635  Sum_probs=29.5

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHCCCcEEEEecC
Q 010623           61 ADVIVVGA-GVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        61 ~dVvIVGg-G~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      ..++|+|| |..|..+|..|++.|.+|+++.|+
T Consensus        29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~   61 (194)
T cd01078          29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD   61 (194)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            57999997 999999999999999999999876

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=88.70  E-value=0.5  Score=51.80  Aligned_cols=34  Identities=26%  Similarity=0.400  Sum_probs=31.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      -.|.|||||..|...|..++..|++|+++|.+++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK  347 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4699999999999999999999999999998853

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=88.52  E-value=0.94  Score=41.13  Aligned_cols=32  Identities=31%  Similarity=0.476  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      ..|+|+|.|-.|..+|..|.+.|.+|++.|++
T Consensus        29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~   60 (200)
T cd01075          29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN   60 (200)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            47999999999999999999999999999876

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=88.50  E-value=0.5  Score=48.13  Aligned_cols=36  Identities=33%  Similarity=0.405  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE   95 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~   95 (506)
                      ...|+|+|-|.+|+++|..|.+.|.+|++.|.++.+
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            368999999999999999999999999999987654

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=88.47  E-value=0.57  Score=45.19  Aligned_cols=34  Identities=35%  Similarity=0.522  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .-.|+|+|.|..|.++|..|+..|.+|++++|.+
T Consensus       151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~  184 (287)
T TIGR02853       151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS  184 (287)
T ss_pred             CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3589999999999999999999999999999874

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PLN02494 adenosylhomocysteinase

Probab=88.45  E-value=0.64  Score=47.54  Aligned_cols=35  Identities=29%  Similarity=0.358  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      .-.|+|+|.|..|..+|..|+..|.+|+++|+++.
T Consensus       254 GKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~  288 (477)
T PLN02494        254 GKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPI  288 (477)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            46899999999999999999999999999998863

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=88.45  E-value=0.54  Score=51.48  Aligned_cols=34  Identities=24%  Similarity=0.414  Sum_probs=31.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      -.|.|||||..|...|..++.+|++|+++|.+++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH  347 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4699999999999999999999999999999854

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=88.39  E-value=0.75  Score=40.21  Aligned_cols=33  Identities=36%  Similarity=0.533  Sum_probs=28.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .+|-|||-|-.|...|..|.++|++|.++++.+
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~   34 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP   34 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence            478999999999999999999999999999875

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=88.38  E-value=0.68  Score=46.18  Aligned_cols=34  Identities=38%  Similarity=0.534  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      +..|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus        28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         28 DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            4799999999999999999999998 899999874

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=88.28  E-value=0.72  Score=44.59  Aligned_cols=33  Identities=27%  Similarity=0.410  Sum_probs=29.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCc-EEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRR-VHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~-v~vvE~~~   93 (506)
                      -.|+|+|||-+|.++|..|++.|.+ |+|+.|+.
T Consensus       127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            4799999999999999999999996 99999863

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=88.17  E-value=0.59  Score=45.54  Aligned_cols=32  Identities=34%  Similarity=0.643  Sum_probs=29.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .|.|+|+|-.|...|+.|++.|.+|+++=|.+
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~   33 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR   33 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence            68999999999999999999998888887764

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=88.07  E-value=0.8  Score=42.60  Aligned_cols=32  Identities=44%  Similarity=0.643  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      .|+|||+|-.|...+..|++.|+ +++|+|.+.
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~   33 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT   33 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            48999999999999999999998 889999874

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	506
2x3n_A	399	Crystal Structure Of Pqsl, A Probable Fad-Dependent		1e-04

>pdb|2X3N|A Chain A, Crystal Structure Of Pqsl, A Probable Fad-Dependent Monooxygenase From Pseudomonas Aeruginosa Length = 399

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 119/310 (38%), Gaps = 38/310 (12%)
Query: 75  LANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYAL 134
           LA  L + G RV V+E+   E      +LL+P G   +   GL   V +   +      +
Sbjct: 21  LAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEV 80
Query: 135 FKDGNRTQISYPLEKF-HSDVAGRGFHNGRFVQRLREKAASLPNVRLE-QGTVTSLLEEK 192
           + DG        L  F +S V  RG+    F+    E    L   +++ + TV  L E +
Sbjct: 81  YHDGE------LLRYFNYSSVDARGY----FILMPCESLRRLVLEKIDGEATVEMLFETR 130
Query: 193 GTIKGVQYKTKAG------EELTAYAPLTIV-CDGCFSNLRRSLCNPKVD---VPS-CFV 241
             I+ VQ   +         +     P  +V  DG  S +RR L +  V+    PS   V
Sbjct: 131 --IEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIASYVRRRLLDIDVERRPYPSPMLV 188
Query: 242 GL------VLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEM 295
           G       V E   L  ++ G +         FYPI  +  R +V  P ++   +     
Sbjct: 189 GTFALAPCVAERNRLYVDSQGGLAY-------FYPIGFDRARLVVSFPREEARELMADTR 241
Query: 296 ANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPL 355
              L+  +   +  E   +  A       K +P   +    Y      ++GDA +  HP+
Sbjct: 242 GESLRRRLQRFVGDESAEAIAAVTGTSRFKGIPIGYLNLDRYWADNVAMLGDAIHNVHPI 301
Query: 356 TGGGMTVALS 365
           TG GM +A+ 
Sbjct: 302 TGQGMNLAIE 311

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	506
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	4e-34
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	2e-33
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	4e-32
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	2e-24
3atr_A	453	Conserved archaeal protein; saturating double bond	4e-24
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	3e-22
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	1e-18
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	4e-18
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	3e-16
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	3e-15
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	2e-12
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	5e-11
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	4e-10
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	2e-09
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	3e-09
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	5e-09
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	9e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	2e-07
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	2e-07
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	5e-07
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	7e-07
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	1e-06
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	2e-06
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	2e-06
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	2e-06
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	2e-06
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	2e-06
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	2e-06
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	2e-06
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	3e-06
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	3e-06
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	4e-06
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	4e-06
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	5e-06
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	5e-06
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	5e-06
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	7e-06
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	7e-06
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	9e-06
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	1e-05
2cul_A	232	Glucose-inhibited division protein A-related PROT	1e-05
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	2e-05
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	2e-05
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	2e-05
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	3e-05
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	3e-05
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	3e-05
3dme_A	369	Conserved exported protein; structural genomics, P	3e-05
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	4e-05
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	5e-05
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	8e-05
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	9e-05
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	1e-04
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	1e-04
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	1e-04
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	2e-04
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	2e-04
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	2e-04
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	2e-04
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	2e-04
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	3e-04
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	3e-04
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	3e-04
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	4e-04
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	4e-04
1id1_A	153	Putative potassium channel protein; RCK domain, E.	7e-04
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	7e-04
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	7e-04
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	7e-04
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	7e-04
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	7e-04
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	8e-04
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	8e-04

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score =  133 bits (337), Expect = 4e-34
 Identities = 76/382 (19%), Positives = 138/382 (36%), Gaps = 22/382 (5%)

Query: 62  DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIE-LGLEDC 120
           D+IV+G G  G+ LA+ +A  G RV ++ER+ + P   +GE L P     +   LGL D 
Sbjct: 9   DLIVIGGGPGGSTLASFVAMRGHRVLLLERE-AFPRHQIGESLLPATVHGICAMLGLTDE 67

Query: 121 VEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGR--FVQRLREKAASLPNV 178
           +++       G            ++   +   D  G  +   R  F   L   +     V
Sbjct: 68  MKRAGFPIKRGGTFRWGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSER-KGV 126

Query: 179 RLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVP 237
            + +   V  +L E     GV+Y+   G EL A+A   +   G  + + +++        
Sbjct: 127 DVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNRTRVSQAVGERVYSRF 186

Query: 238 SCFVGL---VLENCNLPFENHGHVVLADPSPILFY--PISSNEVRCLVDIPGQKVPSISN 292
              V L         LP    G+++ A      F+  P+S         +  +   +I +
Sbjct: 187 FQNVALYGYFENGKRLPAPRQGNILSAAFQDGWFWYIPLSDTLTSVGAVVSREAAEAIKD 246

Query: 293 GEMANYLKTV-VAPQIPREIFHS-FVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFN 350
           G  A  L+ +   P I   +  +  V   D G I+   + S     +   G  L+GDA  
Sbjct: 247 GHEAALLRYIDRCPIIKEYLAPATRVTTGDYGEIRIRKDYSYCNTSFWKNGMALVGDAAC 306

Query: 351 MRHPLTGGGMTVALSDIVIL-RNLLRHLSN-LNDAPALCNY-------LESFYTLRKPVA 401
              P+   G+ +A    +++ R +   L+  +++      +         +FY       
Sbjct: 307 FVDPVFSSGVHLATYSALLVARAINTCLAGEMSEQRCFEEFERRYRREYGNFYQFLVAFY 366

Query: 402 STINTLAGALYQVFSASPDEAR 423
                     +        E R
Sbjct: 367 DMNQDTDSYFWSARKIINTEER 388

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score =  130 bits (329), Expect = 2e-33
 Identities = 68/385 (17%), Positives = 122/385 (31%), Gaps = 27/385 (7%)

Query: 58  PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGL 117
               DV+V+GAG AG   A+ + K G +V ++E+    P  ++GE L P     L E G 
Sbjct: 3   REKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQ-KFPRFVIGESLLPRCMEHLDEAGF 61

Query: 118 EDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPN 177
            D V+    Q+ FG    +       ++  +  +          G F + L ++AA    
Sbjct: 62  LDAVKAQGFQQKFGAKFVRGKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQ-G 120

Query: 178 VRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDV 236
           V +E    VT +            +   G +    A   I   G    + R     K   
Sbjct: 121 VDVEYEVGVTDIKFFGTDSVTT-IEDINGNKREIEARFIIDASGYGRVIPRMFGLDKPSG 179

Query: 237 PSCFVGL------VLENCNLPFENHGHVVLADPSPILFY--PISSNEVRCLVDIPGQKVP 288
                 L      V        E +    +     +  +  P S+               
Sbjct: 180 FESRRTLFTHIKDVKRPVAAEMEGNRITAVVHKPKVWIWVIPFSNGNTSVGFVGEPSYFD 239

Query: 289 SISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDA 348
             +          +       E F S          +T+   ++ A+     G +L G+A
Sbjct: 240 EYTGTPEERMRAMIANEGHIAERFKS---EEFLFEPRTIEGYAISASKLYGDGFVLTGNA 296

Query: 349 FNMRHPLTGGGMTVALSDIVIL-RNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTL 407
                P+   G T A+       +  ++ L    +     +++E    + + +  T  + 
Sbjct: 297 TEFLDPIFSSGATFAMESGSKGGKLAVQFLKG-EEVNWEKDFVE---HMMQGI-DTFRSF 351

Query: 408 AGALYQ------VFSASPDEARKEM 426
               Y        F+ +PD   K M
Sbjct: 352 VTGWYDGTLHAVFFAKNPDPDHKRM 376

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591

 Score =  128 bits (324), Expect = 4e-32
 Identities = 58/327 (17%), Positives = 107/327 (32%), Gaps = 19/327 (5%)

Query: 60  DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLED 119
            + V ++G G AG+    TL K G  V + ER      R+ GE L PG    L  LGL++
Sbjct: 23  RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRV-GESLLPGTMSILNRLGLQE 81

Query: 120 CVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQR------LREKAA 173
            ++  +  +           + Q  +        VA   F +   V+R      L ++A 
Sbjct: 82  KIDAQNYVKKPSATFL--WGQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEAR 139

Query: 174 SLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNP 232
           S   + + + T VT +         +  + + GE +T  +   I   G    + R L   
Sbjct: 140 S-RGITVHEETPVTDVDLSDPDRVVLTVR-RGGESVTVESDFVIDAGGSGGPISRKLGVR 197

Query: 233 KVDVPSCFVGL---VLENCNLPFENHGHVVLADPSPILFY--PISSNEVRCLVDIPGQKV 287
           + D       +            +  G            +  PI  +     + +   K 
Sbjct: 198 QYDEFYRNFAVWSYFKLKDPFEGDLKGTTYSITFEDGWVWMIPIKDDLYSVGLVVDRSKS 257

Query: 288 PSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGD 347
             +       +  + +A +   +       A     ++ + + S     +      L GD
Sbjct: 258 AEVREQGADAFYSSTLA-KCA-KAMDILGGAEQVDEVRIVQDWSYDTEVFSADRFFLCGD 315

Query: 348 AFNMRHPLTGGGMTVALSDIVILRNLL 374
           A     PL   G+ +A    V     +
Sbjct: 316 AACFTDPLFSQGVHLASQSAVSAAAAI 342

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Length = 399

 Score =  104 bits (261), Expect = 2e-24
 Identities = 72/369 (19%), Positives = 123/369 (33%), Gaps = 20/369 (5%)

Query: 60  DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLED 119
             DV++ G G+ GA LA  L + G RV V+E+   E      +LL+P G   +   GL  
Sbjct: 6   HIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGL-- 63

Query: 120 CVEQIDAQRVFGYALFK--DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPN 177
            + ++  +        +          +      +             + + EK      
Sbjct: 64  -LAEVTRRGGRVRHELEVYHDGELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEAT 122

Query: 178 VRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVP 237
           V +   T    ++        Q +   G  L     + +  DG  S +RR L +  +DV 
Sbjct: 123 VEMLFETRIEAVQRDERHAIDQVRLNDGRVLR--PRVVVGADGIASYVRRRLLD--IDVE 178

Query: 238 ------SCFVGLVLENCNLPFENHGHVVLADPSPI-LFYPISSNEVRCLVDIPGQKVPSI 290
                    VG               + +     +  FYPI  +  R +V  P ++   +
Sbjct: 179 RRPYPSPMLVGTF--ALAPCVAERNRLYVDSQGGLAYFYPIGFDRARLVVSFPREEAREL 236

Query: 291 SNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFN 350
                   L+  +   +  E   +  A       K +P   +    Y      ++GDA +
Sbjct: 237 MADTRGESLRRRLQRFVGDESAEAIAAVTGTSRFKGIPIGYLNLDRYWADNVAMLGDAIH 296

Query: 351 MRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGA 410
             HP+TG GM +A+ D   L + L        A    + L  +   R PV   I +   A
Sbjct: 297 NVHPITGQGMNLAIEDASALADALDLALRDACALE--DALAGYQAERFPVNQAIVSYGHA 354

Query: 411 LYQVFSASP 419
           L        
Sbjct: 355 LATSLEDRQ 363

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score =  104 bits (260), Expect = 4e-24
 Identities = 59/321 (18%), Positives = 113/321 (35%), Gaps = 36/321 (11%)

Query: 60  DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL--SEPDRIVGELLQPGGYLKLIELGL 117
             DV+++G G AG++ A  L++ G ++ +++        D+  G+ +         +LG+
Sbjct: 6   KYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAH---FDKLGM 62

Query: 118 EDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPN 177
                +    ++ G  L+    +T  +   E F  +          + QR+ ++A     
Sbjct: 63  PYPKGEELENKINGIKLYSPDMQTVWTVNGEGFELNAP-------LYNQRVLKEAQDRGV 115

Query: 178 VRLEQGTVTSLLEEKGTIKGVQYKTK-AGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDV 236
              +  T    + E G +KG     +   EELT Y+ + +   G   + R  L       
Sbjct: 116 EIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRSFRSKLPPELPIT 175

Query: 237 ----PSCFVGLVLENCNLPF--ENHGHVVLADPSPIL--FY----PISSNEVR-CLVDIP 283
                        E        E+H ++ +          Y    P   N+V   L    
Sbjct: 176 EDLDDKDADVAYREVLLTKEDIEDHDYLRIFIDQETSPGGYWWYFPKGKNKVNVGLGIQG 235

Query: 284 GQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGAL 343
           G   PSI       Y K  +  +   ++  S +    G  + T              G +
Sbjct: 236 GMGYPSIH-----EYYKKYL-DKYAPDVDKSKLLVKGGALVPTRRPLY----TMAWNGII 285

Query: 344 LMGDAFNMRHPLTGGGMTVAL 364
           ++GD+    +P+ GGG   A+
Sbjct: 286 VIGDSGFTVNPVHGGGKGSAM 306

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Length = 394

 Score = 86.6 bits (215), Expect = 1e-18
 Identities = 78/396 (19%), Positives = 128/396 (32%), Gaps = 51/396 (12%)

Query: 62  DVIVVGAGVAGAALANTLAKDGRRVHVIERD-----LSEP------DRIVGELLQPGGYL 110
            V ++GAG +G  L   L K G    ++ER      L           +V +LL+     
Sbjct: 4   QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMV-DLLR----- 57

Query: 111 KLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQ---- 166
              E G++  + + D     G  +   G R +I            G+      + Q    
Sbjct: 58  ---EAGVDRRMAR-DGLVHEGVEIAFAGQRRRID-----LKRLSGGKTV--TVYGQTEVT 106

Query: 167 -RLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNL 225
             L E   +     + Q     L + +G    V +  + GE L         CDG     
Sbjct: 107 RDLMEAREACGATTVYQAAEVRLHDLQGERPYVTF-ERDGERLRLDCDYIAGCDGFHGIS 165

Query: 226 RRSLCNPKVDVPS---CFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDI 282
           R+S+   ++ V      F  L L     P  +            L    S+   +  V +
Sbjct: 166 RQSIPAERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSATRSQYYVQV 225

Query: 283 P-GQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPG 341
           P  +KV   S+      LK  +  ++  ++                P RS    P     
Sbjct: 226 PLSEKVEDWSDERFWTELKARLPSEVAEKLVTGPSL-----EKSIAPLRSFVVEPMQHGR 280

Query: 342 ALLMGDAFNMRHPLTGG-GMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPV 400
             L GDA ++  P TG  G+ +A SD+  L  LL           L   LE +  +    
Sbjct: 281 LFLAGDAAHI-VPPTGAKGLNLAASDVSTLYRLLLKAYREGR-GEL---LERYSAICLRR 335

Query: 401 ASTINTLAGALYQVFSASP--DEARKEMRQACFDYL 434
                  +  +  V    P  D   + ++Q   +Y 
Sbjct: 336 IWKAERFSWWMTSVLHRFPDTDAFSQRIQQTELEYY 371

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398

 Score = 85.2 bits (211), Expect = 4e-18
 Identities = 57/397 (14%), Positives = 112/397 (28%), Gaps = 61/397 (15%)

Query: 63  VIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPG---GYLKLIELGLED 119
           V ++G G  G  +A  L ++G  V V ERD     RI G  L      G   + + GL  
Sbjct: 29  VAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQ 88

Query: 120 CVEQI---DAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQR--LREK-AA 173
               +       +      + GN             +V      +   + R  LR     
Sbjct: 89  TYYDLALPMGVNIAD----EKGN--------ILSTKNVKPENRFDNPEINRNDLRAILLN 136

Query: 174 SLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNP 232
           SL N  +     +  L   K          +     +  A L I+ +G  S +R+ + + 
Sbjct: 137 SLENDTVIWDRKLVMLEPGKK---KWTLTFENKP--SETADLVILANGGMSKVRKFVTDT 191

Query: 233 K-VDVPSCFVGLVLENCNLPFE-------NHGHVVLADPSPILFYPISSNEVRCLVDIPG 284
           +  +  +  +   +    +           +  +     + +   P ++  +   +    
Sbjct: 192 EVEETGTFNIQADIHQPEINCPGFFQLCNGNRLMASHQGNLLFANPNNNGALHFGISFKT 251

Query: 285 QKVPSISNGEMANYLKTVVA----------PQIPREIFHSFVAAVDGGNIKTMPNRSMPA 334
                           +VV            +         +      +   +  R  P 
Sbjct: 252 PDEWKNQTQVDFQNRNSVVDFLLKEFSDWDERYKE-----LIHTTL--SFVGLATRIFPL 304

Query: 335 AP----YPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYL 390
                        ++GDA ++  P  G G+   L D +IL + L      +   A+ NY 
Sbjct: 305 EKPWKSKRPLPITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNY- 363

Query: 391 ESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMR 427
                            +          PD   +++ 
Sbjct: 364 ---EQQMFIYGKEAQEESTQNEIEMF-KPDFTFQQLL 396

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Length = 407

 Score = 79.6 bits (197), Expect = 3e-16
 Identities = 73/391 (18%), Positives = 123/391 (31%), Gaps = 50/391 (12%)

Query: 62  DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI-VGELLQPGGYLKLIELGLEDC 120
             IV+GAG+ G + A  L + G    V E    E   +     + P G   +  LG+ D 
Sbjct: 25  KAIVIGAGIGGLSAAVALKQSGIDCDVYEAV-KEIKPVGAAISVWPNGVKCMAHLGMGDI 83

Query: 121 VEQIDAQ-RVFGYALFKDGNRTQISYPLEKFHSDVAG--RGFHNGRFVQRLREKAASLPN 177
           +E      R   Y  F+ G      + L                    + + +       
Sbjct: 84  METFGGPLRRMAYRDFRSG-ENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDS- 141

Query: 178 VRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVP 237
           V+  +  VT   E+     GV      G   +A   L I  DG  S LR  +        
Sbjct: 142 VQFGK-RVTRCEEDAD---GVTVWFTDGS--SASGDLLIAADGSHSALRPWV-LGFTPQR 194

Query: 238 -----SCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIP----GQKVP 288
                  + GLV  +  L   +     + +   +   P+S+       D+P      +  
Sbjct: 195 RYAGYVNWNGLVEIDEALAPGDQWTTFVGEGKQVSLMPVSAGRFYFFFDVPLPAGLAEDR 254

Query: 289 SISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPG-ALLMGD 347
                +++ Y     AP + +      +AA+D      +    +        G   L+GD
Sbjct: 255 DTLRADLSRYFAG-WAPPVQK-----LIAALDPQTTNRIEIHDIEPFSRLVRGRVALLGD 308

Query: 348 AFNMRHPLT-----GGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVAS 402
           A    H  T     GG    A+ D V+L  + R   ++  A      L  +   R     
Sbjct: 309 A---GHSTTPDIGQGGCA--AMEDAVVLGAVFRQTRDIAAA------LREYEAQRCDRVR 357

Query: 403 TI---NTLAGALYQVFSASPDEAR-KEMRQA 429
            +         +         EA  +E+R+ 
Sbjct: 358 DLVLKARKRCDITHGKDMQLTEAWYQELREE 388

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Length = 381

 Score = 76.4 bits (187), Expect = 3e-15
 Identities = 64/402 (15%), Positives = 117/402 (29%), Gaps = 58/402 (14%)

Query: 63  VIVVGAGVAGAALANTLAK--DGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDC 120
           ++V+GAG AG   A+ L +      + ++E++  +   ++G  +   G          + 
Sbjct: 3   ILVIGAGPAGLVFASQLKQARPLWAIDIVEKN--DEQEVLGWGVVLPGRPGQH---PANP 57

Query: 121 VEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRL 180
           +  +DA         +D      + P           G      V  LR+K  S   + +
Sbjct: 58  LSYLDAPERLNPQFLEDFKLVHHNEPSLMSTGV-LLCGVERRGLVHALRDKCRSQ-GIAI 115

Query: 181 EQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCN--PKVDVPS 238
              +                  + GE   A   L ++ +G             P+VD   
Sbjct: 116 RFESPL---------------LEHGELPLADYDLVVLANGVNHKTAHFTEALVPQVDYGR 160

Query: 239 CF-----VGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNG 293
                     + +  NL F  HG  +    +    Y  S      +V+   +       G
Sbjct: 161 NKYIWYGTSQLFDQMNLVFRTHGKDIFIAHA----YKYSDTMSTFIVECSEETYARARLG 216

Query: 294 EMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGA--------LLM 345
           EM        + +   E       A  GG    +    +    + T           +L+
Sbjct: 217 EM--------SEEASAEYVAKVFQAELGG-HGLVSQPGLGWRNFMTLSHDRCHDGKLVLL 267

Query: 346 GDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTIN 405
           GDA    H   G G T+A+    +L   L     +  A      L+ F     P+     
Sbjct: 268 GDALQSGHFSIGHGTTMAVVVAQLLVKALCTEDGVPAA------LKRFEERALPLVQLFR 321

Query: 406 TLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSL 447
             A      F    +       +    + +        P +L
Sbjct: 322 GHADNSRVWFETVEERMHLSSAEFVQSFDARRKSLPPMPEAL 363

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Length = 397

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 68/408 (16%), Positives = 112/408 (27%), Gaps = 83/408 (20%)

Query: 63  VIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI-VGELLQPGGYLKLIELGLEDCV 121
           + VVG  ++G   A  L   G  V V ER          G ++QP     L+E G+E  +
Sbjct: 8   IAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVE--L 65

Query: 122 EQIDAQ-RVFGYALFKDGNR-TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVR 179
           + I        Y     G R   +             R          L E        R
Sbjct: 66  DSISVPSSSMEYVDALTGERVGSVPADW---------RFTSYDSIYGGLYEL---FGPER 113

Query: 180 LEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPS 238
                 +  L ++      VQ +   G +    A   I  DG  S +R+ L    + +  
Sbjct: 114 YHTSKCLVGLSQDSE---TVQMRFSDGTKAE--ANWVIGADGGASVVRKRL----LGIEP 164

Query: 239 CFVGLV-----------LENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKV 287
            + G V            ++    F +     L D   ++ YPI   E      +  Q  
Sbjct: 165 TYAGYVTWRGVLQPGEVADDVWNYFNDKFTYGLLDDGHLIAYPIPGRENAESPRLNFQWY 224

Query: 288 PSISNGEMANYLKTV--------------VAPQIPREIFHSF----------VAAVDGGN 323
            +++ G   + L T               + P   R+               V       
Sbjct: 225 WNVAEGPDLDELMTDVRGIRLPTSVHNNSLNPHNLRQFHSKGESLFKPFRDLVLNASSPF 284

Query: 324 IKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLT-----GGGMTVALSDIVILRNLLRHLS 378
           +  + +             LL+GDA             GG    A  D   L  +     
Sbjct: 285 VTVVADA--TVDRMVHGRVLLIGDA---AVTPRPHAAAGGAK--ASDDARTLAEVFTKNH 337

Query: 379 NLNDAPALCNYLESFYTLRKPVASTI---NTLAGALYQVFSASPDEAR 423
           +L  +      L+S+ T +               +  Q   +      
Sbjct: 338 DLRGS------LQSWETRQLQQGHAYLNKVKKMASRLQHGGSFEPGNP 379

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379

 Score = 63.5 bits (155), Expect = 5e-11
 Identities = 69/361 (19%), Positives = 107/361 (29%), Gaps = 54/361 (14%)

Query: 63  VIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI-VGELLQPGGYLKLIELGLEDCV 121
             V G G AG   A  L ++G  V + E+  SE      G  L   G   L  LG  D V
Sbjct: 14  AEVAGGGFAGLTAAIALKQNGWDVRLHEKS-SELRAFGAGIYLWHNGLRVLEGLGALDDV 72

Query: 122 EQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAG---RGFHNGRFVQRLREKAASLPNV 178
            Q  +     Y  +                    G   R          L  +A +L  V
Sbjct: 73  LQG-SHTPPTYETWMHNKSVS--------KETFNGLPWRIMTRSHLHDALVNRARALG-V 122

Query: 179 RLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPS 238
            +   +     +  G +       + GE L   A L +  DG  S +R S+   +    S
Sbjct: 123 DISVNSEAVAADPVGRL-----TLQTGEVLE--ADLIVGADGVGSKVRDSIGFKQDRWVS 175

Query: 239 ---CFVGLV----LENCNLPFENHGHVVLADPSP--ILFYPISSNEVRCLVDIPGQKVPS 289
                  +V     E  +  ++N   +    P    IL+ P + NE+   +  P      
Sbjct: 176 KDGLIRLIVPRMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNENELYLGLMAPAADPRG 235

Query: 290 ISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPG-ALLMGDA 348
            S          +             +                      T G   L+GDA
Sbjct: 236 SSVPIDLEVWVEMFPF------LEPCLIEAAKLKTARYDKYETTKLDSWTRGKVALVGDA 289

Query: 349 FNMRHPLT-----GGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVAST 403
               H +      G G   A+ +   L   L   S++ DA      L ++ T  +P+   
Sbjct: 290 A---HAMCPALAQGAGC--AMVNAFSLSQDLEEGSSVEDA------LVAWETRIRPITDR 338

Query: 404 I 404
            
Sbjct: 339 C 339

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Length = 430

 Score = 60.7 bits (146), Expect = 4e-10
 Identities = 57/377 (15%), Positives = 99/377 (26%), Gaps = 51/377 (13%)

Query: 63  VIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDR--IVGELLQPGGYLKLIELGLEDC 120
           + +VGAG AG  L   L +    V V      +      +   +         E+ L+  
Sbjct: 25  IGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAHNAVTVQREVALDVN 84

Query: 121 VEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRL 180
               +    FG+  +  G +                      RF   L+  + ++   RL
Sbjct: 85  EWPSEEFGYFGHYYYVGGPQP--------------------MRFYGDLKAPSRAVD-YRL 123

Query: 181 EQGTVTSLLEEKGTIKGVQYKTKAG-EELTAYAPLTIVCDGCFSNLRRSLCNPK---VDV 236
            Q  +   LE +G        +    E L+    L +VC G ++  +      +    + 
Sbjct: 124 YQPMLMRALEARGGKFCYDAVSAEDLEGLSEQYDLLVVCTGKYALGKVFEKQSENSPFEK 183

Query: 237 PSCFVGLVLENCNLPFENHGHVVLADPSP-----------------ILFYPISSNEVRCL 279
           P   + + L             +   P                   ++      +++  L
Sbjct: 184 PQRALCVGLFKGIKEAPIRAVTMSFSPGHGELIEIPTLSFNGMSTALVLENHIGSDLEVL 243

Query: 280 VDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKT---MPNRSMPAAP 336
                   P      M   L         R     F  A    +I     +P      A 
Sbjct: 244 AHTKYDDDPRAFLDLMLEKLGKHHPSVAERIDPAEFDLANSSLDILQGGVVPAFRDGHAT 303

Query: 337 YPT-PGALLMGDAFNMRHPLTGGGMTVALSDIVIL-RNLLRHLSNLNDAPALCNYLESFY 394
                  + +GD      P+ G G  +A     IL   +L H     D     +      
Sbjct: 304 LNNGKTIIGLGDIQATVDPVLGQGANMASYAAWILGEEILAHSV--YDLRFSEHLERRRQ 361

Query: 395 TLRKPVASTINTLAGAL 411
                     N    AL
Sbjct: 362 DRVLCATRWTNFTLSAL 378

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284

 Score = 57.8 bits (139), Expect = 2e-09
 Identities = 34/182 (18%), Positives = 60/182 (32%), Gaps = 35/182 (19%)

Query: 60  DADVIVVGAGVAGAALANTLAKD-GRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLE 118
           + DV+VVGAG AG + A  ++K+   +V +IE+ +S           PGG   L      
Sbjct: 39  ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS-----------PGGGAWLGGQLFS 87

Query: 119 DCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNV 178
             + +  A               +I    ++  + V  +  H   F   +  K  + PNV
Sbjct: 88  AMIVRKPAHLFL----------DEIGVAYDEQDTYVVVK--HAALFTSTIMSKLLARPNV 135

Query: 179 RLEQGT-VTSLLEEKGTIKGV-------QYKTKAGEE---LTAYAPLTIVCDGCFSNLRR 227
           +L        L+ +   + GV                       A + +   G       
Sbjct: 136 KLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGA 195

Query: 228 SL 229
           + 
Sbjct: 196 TG 197

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* Length = 639

 Score = 58.4 bits (141), Expect = 3e-09
 Identities = 72/425 (16%), Positives = 127/425 (29%), Gaps = 79/425 (18%)

Query: 58  PFDADVIVVGAGVAGAALANTLAK-DGRRVHVIERDLSEPDRIVG-----------ELLQ 105
           P   DV++VG G AG  LA  LA     R  ++E+       +             E+ +
Sbjct: 30  PSQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQK---EGPMELGQADGIACRTMEMFE 86

Query: 106 PGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG-------NRTQISYPLEKFHSDVAGRG 158
                        D + + +A  +     +K          R       E   S+     
Sbjct: 87  --------AFEFADSILK-EACWINDVTFWKPDPGQPGRIARHGRVQDTEDGLSEFPHVI 137

Query: 159 FHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQY----------KTKAGEEL 208
            +  R      E+  + P  RLE      +L+ K       Y             AG+  
Sbjct: 138 LNQARVHDHYLERMRNSP-SRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQIE 196

Query: 209 TAYAPLTIVCDGCFSNLRRSLCN--PKVDVPSCF-VGLVLENCNLPFENHGHVVLADPSP 265
           T  A   + CDG  SN+RR++            + V  VL   + P   +   + ++   
Sbjct: 197 TVQARYVVGCDGARSNVRRAIGRQLVGDSANQAWGVMDVLAVTDFPDVRYKVAIQSEQGN 256

Query: 266 ILFYPI-SSNEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNI 324
           +L  P    + VR  V++                           ++  +    +    +
Sbjct: 257 VLIIPREGGHLVRFYVEMDKLDADERVASRNIT----------VEQLIATAQRVLHPYKL 306

Query: 325 K--------------------TMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVAL 364
           +                         ++     P P   + GDA +   P  G GM  ++
Sbjct: 307 EVKNVPWWSVYEIGQRICAKYDDVVDAVATPDSPLPRVFIAGDACHTHSPKAGQGMNFSM 366

Query: 365 SDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARK 424
            D   L   L  +     AP L   L ++ + R+ VA  +        ++FS    E  +
Sbjct: 367 QDSFNLGWKLAAVLRKQCAPEL---LHTYSSERQVVAQQLIDFDREWAKMFSDPAKEGGQ 423

Query: 425 EMRQA 429
                
Sbjct: 424 GGVDP 428

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Length = 410

 Score = 57.3 bits (139), Expect = 5e-09
 Identities = 71/405 (17%), Positives = 123/405 (30%), Gaps = 58/405 (14%)

Query: 62  DVIVVGAGVAGAALANTLAKDG-RRVHVIER--DLSEPDRIVGELLQ--PGGYLKLIELG 116
           D+++ GAG+ G + A  L + G  +V ++E   ++      +G  +   P     L ELG
Sbjct: 6   DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRP----LGVGINIQPAAVEALAELG 61

Query: 117 LEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAG-RGFHNGRFVQRLREKA-AS 174
           L   +    A              T  S P      +       H G     L       
Sbjct: 62  LGPALAAT-AIPTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRER 120

Query: 175 LPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPK 233
           L    +  G  V  + E  G +  +  +   G+     A + +  DG  S +R  L +P 
Sbjct: 121 LGQQAVRTGLGVERIEERDGRVL-IGARDGHGKPQALGADVLVGADGIHSAVRAHL-HPD 178

Query: 234 VDVP-----SCFVGLV-----LENCNLPFENHGHVVLADPSPI-LFYPISSNEVRCLV-D 281
                    + + G+      L+   +   N  H       PI   +      +   V  
Sbjct: 179 QRPLSHGGITMWRGVTEFDRFLDGKTMIVANDEHWSRLVAYPISARHAAEGKSLVNWVCM 238

Query: 282 IPGQKVPSISNGEMANYLKTVVAPQIPREIFHSF-------VAAVD-GGNIKTMPNRSMP 333
           +P   V  + N    N        +     F  +          +     I   P     
Sbjct: 239 VPSAAVGQLDNEADWN---RDGRLEDVLPFFADWDLGWFDIRDLLTRNQLILQYPMVDRD 295

Query: 334 AAP-YPTPGALLMGDAFNMRHPLT-----GGGMTVALSDIVILRNLLRHLSNLNDAPALC 387
             P +      L+GDA    H +      G     A+ D + L   L   +++  A    
Sbjct: 296 PLPHWGRGRITLLGDA---AHLMYPMGANGASQ--AILDGIELAAALARNADVAAA---- 346

Query: 388 NYLESFYTLRKPVASTI---NTLAGALYQVFSASPDEARKEMRQA 429
             L  +   R+P A+ I   N          ++ P   +    +A
Sbjct: 347 --LREYEEARRPTANKIILANREREKEEWAAASRPKTEKSAALEA 389

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566

 Score = 53.5 bits (129), Expect = 9e-08
 Identities = 36/234 (15%), Positives = 69/234 (29%), Gaps = 58/234 (24%)

Query: 33  MRSKSEDNGADSLRKTPTTALNGECPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92
            + KS D+G D  +     A+         V+VVGAG AG   +    K G  V ++++ 
Sbjct: 96  KKKKSWDDGWD--QDKIQKAIAAGPSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKA 153

Query: 93  --------LSE-------------------PDRIVGELLQPGGYL---KLIELGLEDCVE 122
                   +S                     +  + + ++ G      KL+ +  E   +
Sbjct: 154 PFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDIKLVTILAEQSAD 213

Query: 123 QID----------AQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKA 172
            +             +  G A      RT   +            G      +  LR+ A
Sbjct: 214 GVQWLESLGANLDDLKRSGGARVD---RTHRPH-------GGKSSGPE---IIDTLRKAA 260

Query: 173 ASLPNVRLEQGT-VTSLL-EEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN 224
                +     + V  L+  +  ++ G     K        A   ++  G +  
Sbjct: 261 KEQ-GIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM 313

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 1e-07
 Identities = 62/439 (14%), Positives = 120/439 (27%), Gaps = 122/439 (27%)

Query: 87  HVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYA-----------LF 135
           H ++ +  E             Y  ++ +  +  V+  D + V               + 
Sbjct: 5   HHMDFETGEHQY---------QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII 55

Query: 136 KDGNRTQISYPL-----EKFHSDVAGRGFHNGRFVQRLREK-----AASLPNVRLEQGTV 185
              +    +  L      K    V        +FV+ +         + +   + +   +
Sbjct: 56  MSKDAVSGTLRLFWTLLSKQEEMVQ-------KFVEEVLRINYKFLMSPIKTEQRQPSMM 108

Query: 186 TSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVG--- 242
           T +  E         + +   +   +A   +     +  LR++L   +   P+  V    
Sbjct: 109 TRMYIE--------QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR---PAKNVLIDG 157

Query: 243 --------LVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGE 294
                   + L+ C     ++  V       I F+ ++         +           E
Sbjct: 158 VLGSGKTWVALDVCL----SYK-VQCKMDFKI-FW-LNLKNCNSPETVL----------E 200

Query: 295 MANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGD------- 347
           M   L   + P       HS    +   +I+    R + + PY     LL+         
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN--CLLVLLNVQNAKA 258

Query: 348 --AFNMRHP--LTGGGMTVA--LSDIVILRNLLRHLS-NLNDAPA---LCNYLE-SFYTL 396
             AFN+     LT     V   LS        L H S  L        L  YL+     L
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 397 RKPVASTINTLA----GALYQVFSASPD-------EARKEMRQACFD----------YLS 435
                 T N           +   A+ D       +    + ++  +          +  
Sbjct: 319 P-REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377

Query: 436 LGGIFSSG---PVSLLSGL 451
           L  +F      P  LLS +
Sbjct: 378 L-SVFPPSAHIPTILLSLI 395

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 37/225 (16%), Positives = 75/225 (33%), Gaps = 56/225 (24%)

Query: 42  ADSLRKTPTTALNGECPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERD--------L 93
            D+ +     A+        DV+++G+G AG A A +    G +V ++E++        L
Sbjct: 108 VDADKAAQDKAIAAGVKETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKL 167

Query: 94  SE-------------------PDRIVGELLQPGGYL---KLIELGLEDCVEQID------ 125
           +                       ++ + ++ G  +   +L+++   +  + ID      
Sbjct: 168 AAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMG 227

Query: 126 ----AQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLE 181
                    G A      R+          +  AG G H     Q L + A       + 
Sbjct: 228 ADMTDVGRMGGASVN---RSHRP-------TGGAGVGAH---VAQVLWDNAVKR-GTDIR 273

Query: 182 QGT-VTSLL-EEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN 224
             + V  +L +  G + GV  K +        A   ++  G F+ 
Sbjct: 274 LNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAK 318

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Length = 535

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 42/199 (21%), Positives = 62/199 (31%), Gaps = 39/199 (19%)

Query: 58  PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD--RIVG------ELLQPGGY 109
             + DV+VVGAG+ G + A  LA+ G RV V+ER        R  G      ELL+    
Sbjct: 3   DHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLR---- 58

Query: 110 LKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNG------- 162
                 G+ D   ++               R   S   E   +                 
Sbjct: 59  ----IGGVAD---EVVRADDIRGTQGDFVIRLAESVRGEILRTVSESFDDMVAATEPCTP 111

Query: 163 ---------RFVQRLREKAASLPNVRLEQGT-VTSLLE-EKGTIKGVQYK-TKAGEELTA 210
                    +    L  +A       +  GT + S  + +     GV  +      E   
Sbjct: 112 AGWAMLSQDKLEPILLAQARKHG-GAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDL 170

Query: 211 YAPLTIVCDGCFSNLRRSL 229
            A   +  DG  S +R SL
Sbjct: 171 RAGYLVGADGNRSLVRESL 189

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 50.9 bits (121), Expect = 5e-07
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 4/40 (10%)

Query: 62  DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVG 101
           D ++VGAG AG+ LA  LA  G+RV +++R       I G
Sbjct: 31  DYLIVGAGFAGSVLAERLASSGQRVLIVDRR----PHIGG 66

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Length = 570

 Score = 50.9 bits (122), Expect = 7e-07
 Identities = 17/59 (28%), Positives = 25/59 (42%)

Query: 34 RSKSEDNGADSLRKTPTTALNGECPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92
          R   +D+  D  R+    +   +     DV+VVG G  G  LA  L   G    V+E+ 
Sbjct: 23 RDLYDDDDKDPGRRMMHNSNADDAALTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKL 81

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326

 Score = 49.4 bits (117), Expect = 1e-06
 Identities = 43/196 (21%), Positives = 68/196 (34%), Gaps = 42/196 (21%)

Query: 60  DADVIVVGAGVAGAALANTLAKD--GRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGL 117
            +DVI+VGAG +G + A  +AK+    +V +IE  ++           PGG   L     
Sbjct: 65  VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA-----------PGGGSWLGGQLF 113

Query: 118 EDCVEQIDAQRV---FGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAAS 174
              V +  A             +G+   +                H   F+  +  K   
Sbjct: 114 SAMVMRKPAHLFLQELEIPYEDEGDYVVVK---------------HAALFISTVLSKVLQ 158

Query: 175 LPNVRLEQGT-VTSLL------EEKGTIKGVQYK----TKAGEELTAYAPLTIVCDGCFS 223
           LPNV+L   T V  L+      + + T+ GV       T+A        P  I   G  +
Sbjct: 159 LPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKN 218

Query: 224 NLRRSLCNPKVDVPSC 239
           +  R L      + S 
Sbjct: 219 DGTRDLSQKHGVILST 234

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507

 Score = 49.4 bits (117), Expect = 2e-06
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIER 91
              +V+G+G  GA  A  L + G    ++E 
Sbjct: 11 RVPALVIGSGYGGAVAALRLTQAGIPTQIVEM 42

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Length = 499

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 41/185 (22%), Positives = 61/185 (32%), Gaps = 35/185 (18%)

Query: 58  PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERD--LSEPDRIVG------ELLQPGGY 109
             DA VIVVGAG AG  LA  L   G  V V+E+    +   R +G      E+      
Sbjct: 10  RSDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFD---- 65

Query: 110 LKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLR 169
               + G+         +          G            +     +          L 
Sbjct: 66  ----QRGILP--AFGPVETSTQG--HFGGRPVDFGVLEGAHY---GVKAVPQSTTESVLE 114

Query: 170 EKAASLPNVRLEQGT-VTSLLEEKGTIKGV--QYKTKAGEE-LTA-YAPLTIVCDGCFSN 224
           E A       L +G  V + L ++G    V  + +   G   LT  Y    + CDG  S 
Sbjct: 115 EWALGRG-AELLRGHTVRA-LTDEGD--HVVVEVEGPDGPRSLTTRYV---VGCDGGRST 167

Query: 225 LRRSL 229
           +R++ 
Sbjct: 168 VRKAA 172

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504

 Score = 49.3 bits (117), Expect = 2e-06
 Identities = 8/32 (25%), Positives = 14/32 (43%)

Query: 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIER 91
              +V+G G   A  A  L + G +  ++E 
Sbjct: 5  YVPAVVIGTGYGAAVSALRLGEAGVQTLMLEM 36

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Length = 372

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 9/33 (27%), Positives = 16/33 (48%)

Query: 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92
            D+I++G+G  GAA      + G  V + +  
Sbjct: 2  KYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAH 34

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623

 Score = 49.1 bits (116), Expect = 2e-06
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIER 91
              DV++VG+G  G   A  L   G +V + + 
Sbjct: 44 DIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDI 77

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Length = 397

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 16/32 (50%), Positives = 20/32 (62%)

Query: 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92
           DV+VVG G  G A A  +A+ G RV V+ER 
Sbjct: 5  YDVVVVGGGPVGLATAWQVAERGHRVLVLERH 36

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 48.5 bits (115), Expect = 2e-06
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERD 92
          D I+VG+G+ GA  AN L K  ++V VIE+ 
Sbjct: 3  DYIIVGSGLFGAVCANELKKLNKKVLVIEKR 33

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384

 Score = 48.5 bits (115), Expect = 3e-06
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 4/40 (10%)

Query: 62  DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVG 101
            +++VGAG +GA +   LA+ G +VH+I++     D I G
Sbjct: 5   KILIVGAGFSGAVIGRQLAEKGHQVHIIDQR----DHIGG 40

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Length = 382

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92
           + +V+G G+ G+A+A  LAK+ +   + E  
Sbjct: 18 YEAVVIGGGIIGSAIAYYLAKENKNTALFESG 49

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498

 Score = 48.3 bits (115), Expect = 4e-06
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 38 EDNGADSLRKTPTTALNGECPFDADVIVVGAGVAGAALANTLAKDGRRVHVIE-RD 92
          ++N  +   +     L         V++VGAG+AG + A  LA  G +V V+E  +
Sbjct: 12 QENDYEEFLEIARNGLKATSN-PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 66

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Length = 549

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92
          P + DV+++G G  G ALA  LA       V+E+ 
Sbjct: 24 PIETDVLILGGGPVGMALALDLAHRQVGHLVVEQT 58

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERD 92
            +VVGAG+ G      LA++G  + V+E+ 
Sbjct: 2  RAVVVGAGLGGLLAGAFLARNGHEIIVLEKS 32

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Length = 500

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 45/186 (24%), Positives = 65/186 (34%), Gaps = 41/186 (22%)

Query: 60  DADVIVVGAGVAGAALANTLAKDGRRVHVIERD--LSEPDRIVG------ELLQPGGYLK 111
           DA VIVVGAG AG  LA  L   G  V V+ER    +   R +G      E+        
Sbjct: 11  DAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQ----- 65

Query: 112 LIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHN---GRFVQRL 168
               G+          R         G+   +           A +             L
Sbjct: 66  ---RGILP--------RFGEVETSTQGHFGGLPIDFGVLEG--AWQAAKTVPQSVTETHL 112

Query: 169 REKAASLPNVRLEQGT-VTSLLEEKGTIKGV--QYKTKAGEE-LTA-YAPLTIVCDGCFS 223
            + A  L    + +G  V S L + G   GV  + +   G+  L A Y    + CDG  S
Sbjct: 113 EQWATGLG-ADIRRGHEVLS-LTDDGA--GVTVEVRGPEGKHTLRAAYL---VGCDGGRS 165

Query: 224 NLRRSL 229
           ++R++ 
Sbjct: 166 SVRKAA 171

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Length = 389

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIER 91
           DVIVVGAG  G A    LAK G +  +++ 
Sbjct: 4  FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDA 34

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* Length = 665

 Score = 47.7 bits (113), Expect = 7e-06
 Identities = 81/449 (18%), Positives = 147/449 (32%), Gaps = 102/449 (22%)

Query: 60  DADVIVVGAGVAGAALANTLAKD-----GRRVHVIERDLSEPD---RIVG------ELLQ 105
             DV++VGAG AG   A  L++        +V +I++  S      +  G      E L+
Sbjct: 8   YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDK-RSTKVYNGQADGLQCRTLESLK 66

Query: 106 PGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN-----RTQISYPLEKFHSDVAGRGFH 160
                    LGL D +   +A  +   AL+         RT          S       H
Sbjct: 67  --------NLGLADKILS-EANDMSTIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLH 117

Query: 161 NGRFVQRLREKAASLPNVRLE-------------------------QGTVTSLLEEKGTI 195
            GR  +R+ +  A + + R++                           T+  + E++ T 
Sbjct: 118 QGRIERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYPVTMTLRYMSEDESTP 177

Query: 196 KGVQYKTKAGEELTAYAPLT-------------------------IVCDGCFSNLRRSLC 230
               +KT+ G   +                               I CDG  S +RR+L 
Sbjct: 178 LQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVRRTLG 237

Query: 231 NPKVDVPSCFVGLVLE---NCNLP-FENHGHVVLADPSPILFYPISSNEVRCLVDIPGQK 286
              +   + ++  VL+     N P   +   +  A+   I+  P  +N VR  V +  + 
Sbjct: 238 FEMIGEQTDYIWGVLDAVPASNFPDIRSRCAIHSAESGSIMIIPRENNLVRFYVQLQARA 297

Query: 287 VPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTM----PNRSMPAAPYPTPG- 341
                        + V+A    ++IFH +    D   +         + +    +     
Sbjct: 298 EKGGRVDRTKFTPEVVIA--NAKKIFHPY--TFDVQQLDWFTAYHIGQRV-TEKFSKDER 352

Query: 342 ALLMGDAFNMRHPLTGGGMTVALSDIVILRNL---LRHLSNLNDAPALCNYLESFYTLRK 398
             + GDA +   P  G GM  ++ D     NL   L  +        +   L+++   R+
Sbjct: 353 VFIAGDACHTHSPKAGQGMNTSMMDTY---NLGWKLGLVLTGRAKRDI---LKTYEEERQ 406

Query: 399 PVASTINTLAGALYQVFSASPDEARKEMR 427
           P A  +        ++FS  P +   +  
Sbjct: 407 PFAQALIDFDHQFSRLFSGRPAKDVADEM 435

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* Length = 438

 Score = 47.2 bits (112), Expect = 9e-06
 Identities = 34/222 (15%), Positives = 62/222 (27%), Gaps = 62/222 (27%)

Query: 60  DADVIVVGAGVAGAALANTLAKDG-RRVHVIER-DLSEPD-------RIV---------- 100
            + +++VGAG  G + A  LA+ G   V V++   +           +++          
Sbjct: 6   SSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVPSAISAGNDVNKVISSGQYSNNKD 65

Query: 101 ----------------------GELLQPGGYLKLI--ELGLEDCVEQIDAQRVFGYALFK 136
                                        G L     + GL+    ++            
Sbjct: 66  EIEVNEILAEEAFNGWKNDPLFKPYYHDTGLLMSACSQEGLDRLGVRVRPGEDPNLVELT 125

Query: 137 DGNRTQISYPLEKFHSDVAGRG----------FHNGRFVQRLREKAASLPNVRLEQGT-- 184
              + +   P      D  G             H    +     +A  +  V+   GT  
Sbjct: 126 RPEQFRKLAPEGVLQGDFPGWKGYFARSGAGWAHARNALVAAAREAQRM-GVKFVTGTPQ 184

Query: 185 --VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN 224
             V +L+ E   +KG    T  G+     A  T +C G  + 
Sbjct: 185 GRVVTLIFENNDVKGA--VTADGKIWR--AERTFLCAGASAG 222

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Length = 382

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 14/35 (40%), Positives = 23/35 (65%)

Query: 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92
          P  ++++V+G G+ G  +A+ LAK G  V VIE+ 
Sbjct: 3  PEKSEIVVIGGGIVGVTIAHELAKRGEEVTVIEKR 37

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 Length = 232

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 35/173 (20%), Positives = 52/173 (30%), Gaps = 61/173 (35%)

Query: 62  DVIVVGAGVAG--AALANTLAKDGRRVHVIERDLSEPDRI--------VGELLQPGGYLK 111
            V++VGAG +G   A    LA+ G RV ++ + L   D +              PG  L 
Sbjct: 5   QVLIVGAGFSGAETAFW--LAQKGVRVGLLTQSL---DAVMMPFLPPKPPFP--PGSLL- 56

Query: 112 LIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREK 171
                        D +      ++      +  Y LE                       
Sbjct: 57  ---------ERAYDPK---DERVW--AFHARAKYLLEG---------------------- 80

Query: 172 AASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN 224
              L  + L Q T T LL E   + GV  +T  G          ++  G F  
Sbjct: 81  ---LRPLHLFQATATGLLLEGNRVVGV--RTWEGPPARGEK--VVLAVGSFLG 126

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Length = 381

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 1/37 (2%)

Query: 56 ECPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92
            P +AD +V+GAG+AGA+    L+  GR V V+ER+
Sbjct: 5  HHPIEADYLVIGAGIAGASTGYWLSAHGRVV-VLERE 40

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* Length = 448

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 61 ADVIVVGAGVAGAALANTLAKDG-RRVHVIERD 92
           D +VVGAGV G A A  L       V V++  
Sbjct: 24 FDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAG 56

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* Length = 546

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 62  DVIVVGAGVAGAALANTLAKDGRRVHVIE---RDLSEPDRIVGELLQPGGYLKLI 113
           D I+VGAG  G   A+ L++ G++V ++E       +              L   
Sbjct: 9   DYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKF 63

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIE-RD 92
            DV+VVG G++G A A  L   G  V V+E RD
Sbjct: 4  KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARD 37

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 62 DVIVVGAGVAGAALANTLAKDGRRVHVIER 91
            +V+GAG+ G   A  L+K G  V V ER
Sbjct: 2  KTVVIGAGLGGLLSAARLSKAGHEVEVFER 31

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399

 Score = 45.1 bits (106), Expect = 3e-05
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 62 DVIVVGAGVAGAALANTLAKD-GRRVHVIERD 92
          D+ VVG+G  G  +A  +A    +RV V+ER 
Sbjct: 9  DLFVVGSGFFGLTIAERVATQLDKRVLVLERR 40

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Length = 369

 Score = 44.8 bits (107), Expect = 3e-05
 Identities = 17/32 (53%), Positives = 19/32 (59%)

Query: 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIER 91
          D D IV+GAGV G A+A  LA  G  V V E 
Sbjct: 4  DIDCIVIGAGVVGLAIARALAAGGHEVLVAEA 35

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* Length = 363

 Score = 45.1 bits (106), Expect = 4e-05
 Identities = 39/178 (21%), Positives = 60/178 (33%), Gaps = 35/178 (19%)

Query: 62  DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE-----------------PDRIVGELL 104
            V+V+G+GV G + A  LA+ G  VH++ RDL E                 P   + +  
Sbjct: 8   RVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVSSQTFASPWAGANWTPFMTLTDGP 67

Query: 105 QPG-----GYLKLIELGLEDCVEQIDAQRVFGY-------ALFKDGNRTQISYPLEKFHS 152
           +        + K +EL        +   R F           +KD        P  +   
Sbjct: 68  RQAKWEESTFKKWVELVPTGHAMWLKGTRRFAQNEDGLLGHWYKDITPNYRPLPSSECPP 127

Query: 153 DVAGRGF-----HNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAG 205
              G  +     H  ++ Q L  +   L     E+ TVTSL +       V   T  G
Sbjct: 128 GAIGVTYDTLSVHAPKYCQYLARELQKL-GATFERRTVTSLEQAFDGADLVVNATGLG 184

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431

 Score = 44.8 bits (106), Expect = 5e-05
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 62 DVIVVGAGVAGAALANTLAKDGRRVHVIE-RD 92
          D IVVG G +G   A  L   G++V ++E  +
Sbjct: 3  DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGE 34

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score = 44.0 bits (104), Expect = 8e-05
 Identities = 18/32 (56%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 62 DVIVVGAGVAGAALANTLAKDGRRVHVIE-RD 92
          DV +VGAG +G A A  L K G  V VIE RD
Sbjct: 7  DVAIVGAGPSGLAAATALRKAGLSVAVIEARD 38

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489

 Score = 44.1 bits (104), Expect = 9e-05
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 62 DVIVVGAGVAGAALANTLAKDGRRVHVIE-RD 92
           V+V+G G AG   A  L K G +V V+E R 
Sbjct: 13 SVVVLGGGPAGLCSAFELQKAGYKVTVLEART 44

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Length = 546

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 10/58 (17%)

Query: 60  DADVIVVGAGVAGAALANTLAKDGR-RVHVIE---RDLSEPDRIVGELLQPGGYLKLI 113
           + D IVVG G AGAA+A  L++D    V ++E    D   P+ +             +
Sbjct: 13  EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVL------QLDRWMEL 64

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 5/41 (12%)

Query: 62  DVIVVGAGVAGAALANTLAK-DGRRVHVIERDLSEPDRIVG 101
           DV+V+GAG  G   A  L + DG    +++ +    +   G
Sbjct: 12  DVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSN----ETPGG 48

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} Length = 526

 Score = 43.6 bits (104), Expect = 1e-04
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 13/76 (17%)

Query: 42  ADSLRKTPTTALNGECPFDADVIVVGAGVAGAALANTLAKDGR-RVHVIE---RDLSEPD 97
           AD +R T     +     + D+++VG G AG+ LA  L++D   RV +IE          
Sbjct: 2   ADGVRMTRAKVEHAP---NCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDI 58

Query: 98  RIVGELLQPGGYLKLI 113
                   P  +  L 
Sbjct: 59  WN------PAAWPALQ 68

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* Length = 536

 Score = 43.3 bits (103), Expect = 2e-04
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 9/54 (16%)

Query: 62  DVIVVGAGVAGAALANTLAKDGRRVHVIER---DLSEPDRIVGELLQPGGYLKL 112
           D ++VG G +G  LA TL++   +V V+ER     + P+     +L   G++  
Sbjct: 28  DYVIVGGGTSGCPLAATLSEK-YKVLVLERGSLPTAYPN-----VLTADGFVYN 75

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 Length = 587

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 62  DVIVVGAGVAGAALANTLAKDGR-RVHVIERDLSEPDRIVGELLQ-PGGYLKLI 113
           D I+ G G+ G  +A  L ++ + +V VIE+     +   G +++ P  Y ++ 
Sbjct: 26  DYIIAGGGLTGLTVAAKLTENPKIKVLVIEK--GFYESNDGAIIEDPNAYGQIF 77

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} Length = 577

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 62  DVIVVGAGVAGAALANTLAKDGR-RVHVIERDLSEPDRIVGELLQ-PGGYLKL 112
           D ++VG G AG  +A  LA++    V ++E  +  P+      +  P   + L
Sbjct: 8   DFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPED--IPEITTPSSAMDL 58

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* Length = 510

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 41/245 (16%), Positives = 70/245 (28%), Gaps = 74/245 (30%)

Query: 34  RSKSEDNGADSLRKTPTTALNGECP----FDADVIVVGAGVAGAALANTLAKDGRRVHVI 89
            S     G+  +  TP    +        ++ADV+V G G+AG A +   A+ G  V V+
Sbjct: 11  SSGLVPRGSHMVDATPIRPRSATTVTEWDYEADVVVAGYGIAGVAASIEAARAGADVLVL 70

Query: 90  ERD--------LSEPDRIVGELLQPGGYLKLIELGLEDCVE------------QIDAQRV 129
           ER         L+      G +   GG       G +D  E              D +++
Sbjct: 71  ERTSGWGGATALAG-----GFIYLGGGTPLQKACGFDDSPENMKTFMMAALGPGADEEKI 125

Query: 130 FGYA---------------LFKDGNRTQISYPLEKFHSDVAGRGFHNGRF---------- 164
             Y                 FK+    +  +        +   G +   F          
Sbjct: 126 TDYCEGSVEHYNWLVDCGVPFKESFWGEPGWEPPFDDGLMYSGGENAAPFNEIAAPAPRG 185

Query: 165 -------------------VQRLREKAASLPN-VRLEQGTVTSLLEEKGTIKGVQYKTKA 204
                              ++ L E A  L      +    T + ++ G + G+  K   
Sbjct: 186 HVPQMDGKRTGEKGGGYMLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYG 245

Query: 205 GEELT 209
            E   
Sbjct: 246 KEVAV 250

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* Length = 583

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 62  DVIVVGAGVAGAALANTLAKDGR-RVHVIERDLSEPDRIVGELLQ-PGGYLKLI 113
           D I+ G G+ G   A  L ++    V VIE    E DR  G +++    Y  + 
Sbjct: 21  DYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDR--GPIIEDLNAYGDIF 72

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} Length = 475

 Score = 42.6 bits (99), Expect = 3e-04
 Identities = 10/30 (33%), Positives = 20/30 (66%)

Query: 62 DVIVVGAGVAGAALANTLAKDGRRVHVIER 91
          DVI++G G+    L+  L+  G+++ V++R
Sbjct: 22 DVIILGTGLKECILSGLLSHYGKKILVLDR 51

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} Length = 566

 Score = 42.5 bits (101), Expect = 3e-04
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 9/56 (16%)

Query: 62  DVIVVGAGVAGAALANTLAKDGR-RVHVIE---RDLSEPDRIVGELLQPGGYLKLI 113
           D +VVGAG AG  +A  L +D    V V+E    D +           P     L+
Sbjct: 4   DYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEA-----PLLAPGLV 54

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 5/43 (11%)

Query: 58 PFDADVIVVGAGVAGAALANTLAKDG-RRVHVIERDLSEPDRI 99
            D+ + ++GAG AG A    L + G     ++ER     D +
Sbjct: 4  SKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERT----DHV 42

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* Length = 405

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 61 ADVIVVGAGVAGAALANTLAKDG--RRVHVIERD 92
           D I+VG G  G A A  LAK+     V V+E+ 
Sbjct: 22 YDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKG 55

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score = 42.0 bits (98), Expect = 4e-04
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERD 92
           V V+GAGV+G A A  L   G  V V E +
Sbjct: 15 RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAE 45

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 Length = 153

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 9/45 (20%), Positives = 16/45 (35%)

Query: 63  VIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPG 107
            IV G  +        L + G+ V VI     +  + + + L   
Sbjct: 6   FIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDN 50

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} Length = 141

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 15/71 (21%)

Query: 60  DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYL--------- 110
             + IV+G+  AG  L   L   G++V  +++     ++I  ELL+  G+          
Sbjct: 6   RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKS---KEKI--ELLEDEGFDAVIADPTDE 60

Query: 111 -KLIELGLEDC 120
                L LE  
Sbjct: 61  SFYRSLDLEGV 71

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Length = 549

 Score = 41.0 bits (97), Expect = 7e-04
 Identities = 16/52 (30%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 40 NGADSLRKTPTTALNGECPFDADVIVVGAGVAGAALANTLAKDGRRVHVIER 91
          NG    R   T           DV+VVGAG+AG    +     G  V   E 
Sbjct: 2  NGQHP-RSVVTAPDATTGTTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEA 52

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Length = 542

 Score = 41.0 bits (97), Expect = 7e-04
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIER 91
          P + DV+VVGAG +G      L + GR VHVIE 
Sbjct: 14 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIET 47

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Length = 342

 Score = 40.9 bits (94), Expect = 7e-04
 Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 3/34 (8%)

Query: 61 ADVIVVGAGVAGAALANTLAKDG---RRVHVIER 91
          A V++VGAG+ G+  A  L +       + V ++
Sbjct: 2  AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDK 35

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484

 Score = 41.0 bits (95), Expect = 7e-04
 Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 62 DVIVVGAGVAGAALANTLAKDG-RRVHVIERD 92
           ++++GAG  G   A  L + G +  H+ E +
Sbjct: 11 KIVIIGAGPTGLGAAVRLTELGYKNWHLYECN 42

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 60  DADVIVVGAGVAGAALANTLAKDGRRVHVIER 91
             DV+VVG+G AG + A +    G +V +IE+
Sbjct: 126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEK 157

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score = 40.7 bits (95), Expect = 8e-04
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92
            +V VVG G++G A+A+ L   G    ++E  
Sbjct: 16 GMNVAVVGGGISGLAVAHHLRSRGTDAVLLESS 48

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	506
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	100.0
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	100.0
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	100.0
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	100.0
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	100.0
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	100.0
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	100.0
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	100.0
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	100.0
4hb9_A	412	Similarities with probable monooxygenase; flavin,	100.0
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	100.0
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	100.0
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	100.0
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	100.0
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	100.0
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	100.0
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	100.0
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	100.0
3atr_A	453	Conserved archaeal protein; saturating double bond	100.0
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	100.0
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	100.0
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	100.0
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	100.0
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	100.0
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	99.97
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	99.97
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	99.97
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	99.95
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.93
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.8
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.62
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.56
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.56
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.56
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.55
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.55
3dme_A	369	Conserved exported protein; structural genomics, P	99.54
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.52
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	99.52
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.51
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.5
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.49
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.48
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.48
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.47
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.47
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.42
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.41
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.4
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	99.39
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.38
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.37
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.35
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.32
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.32
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	99.32
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	99.31
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	99.31
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.31
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.3
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	99.3
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.28
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.26
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	99.25
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.25
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.25
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	99.24
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.24
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	99.23
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	99.22
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.21
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.21
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	99.21
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.18
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.17
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.16
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.14
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.14
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.14
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.13
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	99.1
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.1
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.09
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.09
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.08
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.07
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.07
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.06
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.05
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	99.05
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.03
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.0
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	98.98
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.98
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.98
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.96
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.96
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.94
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.94
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	98.94
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.92
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.92
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.91
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.88
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.88
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.87
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.85
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.84
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.83
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.8
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	98.8
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.79
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.78
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.78
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.77
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.76
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.75
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.74
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.74
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.74
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.73
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.73
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.72
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.7
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.68
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.67
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.67
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.66
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.66
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.64
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.63
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.61
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.61
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.61
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.59
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.58
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.57
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.56
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.56
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.54
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.54
4dna_A	463	Probable glutathione reductase; structural genomic	98.52
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.52
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.52
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.51
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	98.47
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.47
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.46
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	98.43
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.43
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.43
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.43
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	98.43
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.42
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.41
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.4
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.39
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.39
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.38
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.38
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.37
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.36
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.36
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.35
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.34
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.33
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.33
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.33
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.33
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.31
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.31
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.3
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.3
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.26
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.25
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.24
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.23
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.23
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.23
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.22
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.21
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.2
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	98.2
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	98.19
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.19
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.16
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.15
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.14
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.13
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.12
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.12
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.12
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	98.1
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.1
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.1
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.09
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	98.09
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.08
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.08
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.08
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.08
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.07
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.07
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.07
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	98.06
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.06
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.06
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.04
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.03
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.02
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.01
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.01
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.0
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	97.99
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.99
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.95
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	97.95
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.94
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.92
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.92
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.91
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.91
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.9
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.9
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.89
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	97.88
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	97.87
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.87
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.87
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.85
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	97.84
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.84
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.83
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.82
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.81
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.81
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.81
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.81
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.8
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	97.8
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.79
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.79
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.79
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.75
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.73
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.73
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.73
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	97.72
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.71
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.71
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.67
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.66
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.66
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.64
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.61
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.61
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.58
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.58
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.56
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	97.54
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.51
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.5
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	97.5
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	97.49
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.46
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.44
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.42
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.4
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	97.34
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.32
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.32
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.32
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	97.28
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.25
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.25
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.22
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.22
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.18
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	97.15
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.1
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	97.0
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	96.98
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	96.95
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	96.95
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	96.91
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	96.83
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	96.8
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	96.76
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	96.72
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	96.54
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	96.5
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.33
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	96.27
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.21
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.9
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.86
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	95.85
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	95.72
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	95.42
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	95.37
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	95.33
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	95.17
3c85_A	183	Putative glutathione-regulated potassium-efflux S	95.03
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	94.96
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	94.94
4fk1_A	304	Putative thioredoxin reductase; structural genomic	94.86
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	94.72
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	94.3
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	94.28
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	94.15
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	94.09
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	94.07
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	94.03
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	93.97
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	93.81
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	93.75
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	93.72
4g65_A	461	TRK system potassium uptake protein TRKA; structur	93.46
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	93.44
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	93.43
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	93.41
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	93.39
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	93.38
3qha_A	296	Putative oxidoreductase; seattle structural genomi	93.37
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	93.36
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	93.33
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	93.3
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	93.25
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	93.23
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	93.22
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	93.22
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	93.21
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	93.17
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	93.16
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	93.11
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	93.09
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	93.06
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	93.03
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	92.77
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	92.75
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	92.66
4dna_A	463	Probable glutathione reductase; structural genomic	92.61
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	92.4
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	92.37
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	92.36
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	92.31
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	92.27
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	92.27
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	92.24
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	92.22
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	92.2
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	92.19
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	92.11
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	91.94
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	91.94
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	91.88
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	91.75
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	91.75
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	91.67
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	91.61
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	91.41
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	91.38
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	91.37
3tl2_A	315	Malate dehydrogenase; center for structural genomi	91.35
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	91.33
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	91.33
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	91.31
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	91.31
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	91.27
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	91.21
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	91.15
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	91.14
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	91.14
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	91.1
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	90.99
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	90.88
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	90.85
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	90.83
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	90.82
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	90.76
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	90.74
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	90.73
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	90.68
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	90.66
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	90.58
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	90.49
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	90.49
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	90.48
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	90.48
4ezb_A	317	Uncharacterized conserved protein; structural geno	90.46
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	90.44
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	90.38
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	90.31
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	90.28
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	90.21
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	90.18
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	90.1
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	90.02
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	89.99
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	89.96
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	89.88
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	89.87
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	89.82
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	89.76
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	89.73
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	89.69
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	89.66
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	89.62
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	89.6
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	89.57
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	89.57
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	89.56
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	89.52
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	89.51
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	89.5
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	89.37
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	89.26
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	89.21
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	89.14
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	89.08
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	89.07
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	89.05
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	88.92
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	88.89
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	88.86
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	88.86
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	88.84
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	88.77
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	88.75
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	88.71
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	88.64
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	88.61
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	88.59
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	88.55
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	88.53
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	88.48
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	88.47
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	88.46
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	88.45
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	88.42
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	88.39
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	88.39
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	88.31
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	88.28
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	88.26
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	88.22
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	88.22
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	88.2
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	88.2
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	88.19
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	88.18
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	88.17
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	88.12
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	88.11
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	88.06
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	88.03
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	88.01
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	88.0
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	87.92
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	87.85
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	87.84
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	87.84
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	87.81
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	87.8
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	87.59
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	87.58
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	87.52
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	87.5
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	87.45
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	87.39
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	87.37
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	87.36
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	87.35
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	87.27
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	87.21
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	87.17
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	87.11
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	86.96
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	86.92
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	86.9
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	86.67
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	86.65
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	86.61
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	86.59
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	86.56
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	86.54
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	86.47
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	86.44
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	86.42
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	86.33
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	86.28
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	85.83
3on5_A	362	BH1974 protein; structural genomics, joint center	85.78
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	85.77
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	85.76
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	85.6
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	85.57
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	85.57
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	85.56
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	85.51

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=100.00  E-value=9.1e-47  Score=392.17  Aligned_cols=393  Identities=20%  Similarity=0.212  Sum_probs=280.2

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEE
Q 010623           56 ECPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALF  135 (506)
Q Consensus        56 ~~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~  135 (506)
                      ++++++||+||||||+||++|+.|+++|++|+|+||.+.+...+++..++++++++|+++|+++.+.+.  ..... ..+
T Consensus         7 ~~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~--~~~~~-~~~   83 (500)
T 2qa1_A            7 HHRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEV--ETSTQ-GHF   83 (500)
T ss_dssp             -CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSC--CBCCE-EEE
T ss_pred             CccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhc--ccccc-ccc
Confidence            455679999999999999999999999999999999988777788889999999999999999877653  11111 111


Q ss_pred             ECCceeeeecCCcCCC-CCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcC
Q 010623          136 KDGNRTQISYPLEKFH-SDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAP  213 (506)
Q Consensus       136 ~~~~~~~~~~~~~~~~-~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~  213 (506)
                       .+.  ...+.  ... ..+..+.++|..+++.|.+.+.+. +++++++ +|+++++++++++ |++.+.+| +.+++||
T Consensus        84 -~~~--~~~~~--~~~~~~~~~~~i~~~~l~~~L~~~~~~~-gv~v~~~~~v~~i~~~~~~v~-v~~~~~~g-~~~~~a~  155 (500)
T 2qa1_A           84 -GGL--PIDFG--VLEGAWQAAKTVPQSVTETHLEQWATGL-GADIRRGHEVLSLTDDGAGVT-VEVRGPEG-KHTLRAA  155 (500)
T ss_dssp             -TTE--EEEGG--GSTTGGGCEEEEEHHHHHHHHHHHHHHT-TCEEEETCEEEEEEEETTEEE-EEEEETTE-EEEEEES
T ss_pred             -cce--ecccc--cCCCCCCceeecCHHHHHHHHHHHHHHC-CCEEECCcEEEEEEEcCCeEE-EEEEcCCC-CEEEEeC
Confidence             111  11111  111 123456789999999999999988 6888888 4999999888655 66655555 4578999


Q ss_pred             eEEeecCCcccchhhccCCCCCCccceeeEEEeccCCC-CCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCC----CC
Q 010623          214 LTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLP-FENHGHVVLADPSPILFYPISSNEVRCLVDIPGQK----VP  288 (506)
Q Consensus       214 ~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~----~~  288 (506)
                      +||+|||.+|.+|++++++.++......++... ...+ .+....+++.++++++++|.+++..++.+..+...    ..
T Consensus       156 ~vVgADG~~S~VR~~lg~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~p~~~g~~~~~~~~~~~~~~~~~~  234 (500)
T 2qa1_A          156 YLVGCDGGRSSVRKAAGFDFPGTAATMEMYLAD-IKGVELQPRMIGETLPGGMVMVGPLPGGITRIIVCERGTPPQRRET  234 (500)
T ss_dssp             EEEECCCTTCHHHHHTTCCCCEECCCCEEEEEE-EESCCCCCEEEEEEETTEEEEEEEETTTEEEEEEEETTCCC-----
T ss_pred             EEEECCCcchHHHHHcCCCcCCCccceEEEEEE-EEeCCCCCceEEEECCCcEEEEEEcCCCEEEEEEEcCCCCCccccC
Confidence            999999999999999998766544433443332 1111 12223455667788999999988777776653221    12


Q ss_pred             CCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHH
Q 010623          289 SISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIV  368 (506)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~  368 (506)
                      ..+.+++.+.+++.+.+.+..  .       +......|+.....+.+|..|||+|+|||||.++|++|||+|+||+||.
T Consensus       235 ~~~~~~~~~~l~~~~~~~~~~--~-------~~~~~~~~~~~~~~a~~~~~grv~L~GDAAH~~~P~~GqG~n~gi~DA~  305 (500)
T 2qa1_A          235 PPSWHEVADAWKRLTGDDIAH--A-------EPVWVSAFGNATRQVTEYRRGRVILAGDSAHIHLPAGGQGMNTSIQDAV  305 (500)
T ss_dssp             CCCHHHHHHHHHHHHSCCCTT--S-------EEEEEEEEECCEEECSCSEETTEEECGGGTEECCCCSSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhcCCCCCc--c-------ceeEEEEeccCcEEccccccCCEEEEEccccCCCCccccchhhhHHHHH
Confidence            345566667666654432210  0       0112235666666788999999999999999999999999999999999


Q ss_pred             HHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHH--------------
Q 010623          369 ILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYL--------------  434 (506)
Q Consensus       369 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~--------------  434 (506)
                      +|+|+|+.+.+   +.+.+++|++|+++|++++..++..++.+.+++..  ++....+|+.....+              
T Consensus       306 ~La~~La~~~~---g~~~~~~L~~Y~~eR~~~~~~~~~~s~~~~~l~~~--~~~~~~~R~~~~~~~~~~~~~~~~~~~~~  380 (500)
T 2qa1_A          306 NLGWKLGAVVN---GTATEELLDSYHSERHAVGKRLLMNTQAQGLLFLS--GPEVQPLRDVLTELIQYGEVARHLAGMVS  380 (500)
T ss_dssp             HHHHHHHHHHT---TSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--CGGGHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHc---CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHHhhcCHHHHHHHhhhhc
Confidence            99999997642   22346899999999999999999999888888874  455556666543332              


Q ss_pred             hcCCCCchhHHHhhcCCCCCchhhHHHHHH---------HHHHHH-HHhhccCCC
Q 010623          435 SLGGIFSSGPVSLLSGLNPRPLILVFHFFA---------VAIYGV-GRILLPFPS  479 (506)
Q Consensus       435 ~~g~~~~~~~~~~~~~~~~~p~~~~~h~~~---------~~l~~~-~~~l~~~~~  479 (506)
                      ..+..|..+     .+..+.||.|+||.|+         .|+++. +|+|+.+.+
T Consensus       381 g~~~~Y~~~-----~~~~~~~G~r~p~~~l~~~~~~~~l~d~~~~~~~~ll~~~~  430 (500)
T 2qa1_A          381 GLEITYDVG-----TGSHPLLGKRMPALELTTATRETSSTELLHTARGVLLDLAD  430 (500)
T ss_dssp             STTCCCCCC-----CCSCTTTTSBCCCCEEECSSCEEEHHHHTTTCCEEEEETTC
T ss_pred             cCCCccCCC-----CCcCCcCCCCCCCCeeecCCCcEeHHHHhCCCeEEEEEeCC
Confidence            123344331     1224678999999864         888854 599988754

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=100.00  E-value=1.6e-46  Score=390.29  Aligned_cols=390  Identities=19%  Similarity=0.194  Sum_probs=279.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG  138 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (506)
                      +++||+||||||+||++|+.|+++|++|+|+||.+.+...+++..++++++++|+++|+++.+.+.  ..... ..+ .+
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~--~~~~~-~~~-~~   86 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPV--ETSTQ-GHF-GG   86 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSC--CEESE-EEE-TT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhc--ccccc-cee-cc
Confidence            469999999999999999999999999999999988777788889999999999999999877653  11111 111 11


Q ss_pred             ceeeeecCCcCCC-CCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623          139 NRTQISYPLEKFH-SDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI  216 (506)
Q Consensus       139 ~~~~~~~~~~~~~-~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV  216 (506)
                      .  ...+.  ... ..+..+.++|..+++.|.+.+.+. +++++++ +|+++++++++++ |++.+.+| +.+++||+||
T Consensus        87 ~--~~~~~--~~~~~~~~~~~i~~~~l~~~L~~~~~~~-gv~v~~~~~v~~i~~~~~~v~-v~~~~~~g-~~~~~a~~vV  159 (499)
T 2qa2_A           87 R--PVDFG--VLEGAHYGVKAVPQSTTESVLEEWALGR-GAELLRGHTVRALTDEGDHVV-VEVEGPDG-PRSLTTRYVV  159 (499)
T ss_dssp             E--EEEGG--GSTTCCCEEEEEEHHHHHHHHHHHHHHT-TCEEEESCEEEEEEECSSCEE-EEEECSSC-EEEEEEEEEE
T ss_pred             e--ecccc--cCCCCCCceEecCHHHHHHHHHHHHHhC-CCEEEcCCEEEEEEEeCCEEE-EEEEcCCC-cEEEEeCEEE
Confidence            1  11111  111 223456789999999999999987 6888888 5999998887654 55555555 4578999999


Q ss_pred             eecCCcccchhhccCCCCCCccceeeEEEeccCCC-CCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCC----CCCCC
Q 010623          217 VCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLP-FENHGHVVLADPSPILFYPISSNEVRCLVDIPGQK----VPSIS  291 (506)
Q Consensus       217 ~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~----~~~~~  291 (506)
                      +|||++|.+|++++++.++......++... ...+ .+....+++.++++++++|.+++..++.+..+...    ....+
T Consensus       160 gADG~~S~VR~~lg~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~g~~~~~P~~~g~~~~~~~~~~~~~~~~~~~~~  238 (499)
T 2qa2_A          160 GCDGGRSTVRKAAGFDFPGTSASREMFLAD-IRGCEITPRPIGETVPLGMVMSAPLGDGVDRIIVCERGAPARRRTGPPP  238 (499)
T ss_dssp             ECCCTTCHHHHHTTCCCCEECCCCCEEEEE-EESCCCCCEEEEEEETTEEEEEEECSSSCEEEEEEETTCCCCCCSSSCC
T ss_pred             EccCcccHHHHHcCCCCCCCCCccEEEEEE-EEECCCCcceEEEECCCeEEEEEEcCCCEEEEEEEecCCCCccccCCCC
Confidence            999999999999998765544333333322 1111 12223455677788999999988777777653221    12345


Q ss_pred             chHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHH
Q 010623          292 NGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILR  371 (506)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La  371 (506)
                      .+++.+.+++.+.+.+..         .+......|+.....+.+|..|||+|+|||||.++|++|||+|+||+||.+|+
T Consensus       239 ~~~~~~~l~~~~~~~~~~---------~~~~~~~~~~~~~~~a~~~~~grv~L~GDAAH~~~P~~GqG~n~gi~DA~~La  309 (499)
T 2qa2_A          239 YQEVAAAWQRLTGQDISH---------GEPVWVSAFGDPARQVSAYRRGRVLLAGDSAHVHLPAGGQGMNVSVQDSVNLG  309 (499)
T ss_dssp             HHHHHHHHHHHHSCCCTT---------CEEEEEEEECCCEEECSCSEETTEEECGGGTEEECCCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCc---------cceeEEEEEeCCcEEcccccCCCEEEEecccccCCCccccchhhhHHHHHHHH
Confidence            666777776654432210         01112345666667789999999999999999999999999999999999999


Q ss_pred             HHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHH--------------hcC
Q 010623          372 NLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYL--------------SLG  437 (506)
Q Consensus       372 ~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~--------------~~g  437 (506)
                      |+|+.+.+   +.+.+++|++|+++|++++..++..++.+.+++..  ++....+|+...+.+              ..+
T Consensus       310 ~~La~~l~---g~~~~~~L~~Ye~eR~~~~~~~~~~s~~~~~l~~~--~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~  384 (499)
T 2qa2_A          310 WKLAAVVS---GRAPAGLLDTYHEERHPVGRRLLMNTQAQGMLFLS--GDEMQPLRDVLSELIRYDEVSRHLAGMVSGLD  384 (499)
T ss_dssp             HHHHHHHT---TSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CGGGHHHHHHHHHHHTSSHHHHHHHHHHHTTT
T ss_pred             HHHHHHHc---CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHHhhcCHHHHHHHHHHHhCCC
Confidence            99997642   12346899999999999999999999888888874  455556666554332              123


Q ss_pred             CCCchhHHHhhcCCCCCchhhHHHHHH---------HHHHHH-HHhhccCCC
Q 010623          438 GIFSSGPVSLLSGLNPRPLILVFHFFA---------VAIYGV-GRILLPFPS  479 (506)
Q Consensus       438 ~~~~~~~~~~~~~~~~~p~~~~~h~~~---------~~l~~~-~~~l~~~~~  479 (506)
                      ..|..+     .+..+.||.|+||.|+         .|+++. +|+|+.+.+
T Consensus       385 ~~Y~~~-----~~~~~~~G~r~p~~~l~~~~~~~~l~d~~~~~~~~ll~~~~  431 (499)
T 2qa2_A          385 IRYEVD-----GGDHPLLGMRMPHQELVRAHGKTSTTELLHPARGVLLDIAD  431 (499)
T ss_dssp             CCCCCC-----SCSCTTTTSBCCCCEEECSSSEEETTGGGTTCSEEEEECSC
T ss_pred             CccCCC-----CCCCCCCCCCCCCCeeecCCCceeHHHHhcCCeEEEEEecC
Confidence            334321     1224678999999975         678854 588888654

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=100.00  E-value=6.5e-48  Score=405.83  Aligned_cols=406  Identities=20%  Similarity=0.167  Sum_probs=288.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecc--eE--E
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFG--YA--L  134 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~--~~--~  134 (506)
                      .++||+||||||+||++|+.|+++|++|+|+||++.....+++..++++++++|+++|+++.+..........  +.  .
T Consensus         4 ~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~   83 (535)
T 3ihg_A            4 HEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIRL   83 (535)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEEE
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeeeE
Confidence            3589999999999999999999999999999999888788888999999999999999999887754322211  11  1


Q ss_pred             EE--CCceee-e--ecCCc----CCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCC----eEEEEEE
Q 010623          135 FK--DGNRTQ-I--SYPLE----KFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKG----TIKGVQY  200 (506)
Q Consensus       135 ~~--~~~~~~-~--~~~~~----~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~----~v~~v~v  200 (506)
                      ..  .+.... .  .++..    ........+.++|..+++.|.+.+.+. ++++++++ |++++++++    +++ +++
T Consensus        84 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~-gv~i~~~~~v~~i~~~~~~~~~~v~-v~~  161 (535)
T 3ihg_A           84 AESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKH-GGAIRFGTRLLSFRQHDDDAGAGVT-ARL  161 (535)
T ss_dssp             ESSSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHT-TCEEESSCEEEEEEEECGGGCSEEE-EEE
T ss_pred             EeccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhC-CCEEEeCCEEEEEEECCCCccccEE-EEE
Confidence            11  122111 0  11100    000112256789999999999999998 78898885 999998877    654 665


Q ss_pred             EeCCccEEEEEcCeEEeecCCcccchhhccCCCCCCcc--ceeeEEEeccCCCC----CCe-eEEEecCCCcEEEEecCC
Q 010623          201 KTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPS--CFVGLVLENCNLPF----ENH-GHVVLADPSPILFYPISS  273 (506)
Q Consensus       201 ~~~~G~~~~i~a~~vV~AdG~~S~vR~~l~~~~~~~~~--~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~p~~~  273 (506)
                      .+.+| ..+++||+||+|||.+|.+|++++++..+...  ....+.+. .+++.    ... ..++..+.+..+++|+.+
T Consensus       162 ~~~~~-~~~i~a~~vV~AdG~~S~vR~~lgi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~  239 (535)
T 3ihg_A          162 AGPDG-EYDLRAGYLVGADGNRSLVRESLGIGRYGHGTLTHMVGVIFD-ADLSGIMEPGTTGWYYLHHPEFKGTFGPTDR  239 (535)
T ss_dssp             EETTE-EEEEEEEEEEECCCTTCHHHHHTTCCEEEEEEEEEEEEEEEE-CCGGGTSCTTCCEEEEEECSSCEEEEEECSS
T ss_pred             EcCCC-eEEEEeCEEEECCCCcchHHHHcCCCcCCCCccceEEEEEEe-ccChhhccCCceEEEEEECCCceEEEEEecC
Confidence            55555 46789999999999999999999887654432  22222222 23321    112 233445666788889987


Q ss_pred             -CeEEEEEEecCCC---CCCCCchHHHHHHHHhcCC-CCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccC
Q 010623          274 -NEVRCLVDIPGQK---VPSISNGEMANYLKTVVAP-QIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDA  348 (506)
Q Consensus       274 -~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDA  348 (506)
                       +.+.+.+..+++.   .+..+.+++.+.+++.+.. ..+.+          ......|++....+.+|..|||+|+|||
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~----------~~~~~~~~~~~~~a~~~~~grv~LvGDA  309 (535)
T 3ihg_A          240 PDRHTLFVEYDPDEGERPEDFTPQRCVELIGLALDAPEVKPE----------LVDIQGWEMAARIAERWREGRVFLAGDA  309 (535)
T ss_dssp             TTEEEEEEEECTTTTCCGGGCCHHHHHHHHHHHHTCSSCCCE----------EEEEEEEEEEEEEESCSEETTEEECTTT
T ss_pred             CCEEEEEEeeCccccCccccCCHHHHHHHHHHHhCCCCCcee----------EEEeeEeeeeEEEECccccCCEEEEecc
Confidence             4444444444432   2345566677777765542 11111          1234567777777899999999999999


Q ss_pred             CCCCCCCcchhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHH
Q 010623          349 FNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQ  428 (506)
Q Consensus       349 Ah~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~  428 (506)
                      ||.++|++|||+|+||+||.+|+|+|+.+.+   +.+.+++|++|+++|+|++..++..|..+.+.+..+ +......+.
T Consensus       310 AH~~~P~~GqG~n~ai~DA~~La~~La~~l~---g~~~~~lL~~Ye~eR~p~a~~~~~~s~~~~~~~~~~-~~~~~~~~~  385 (535)
T 3ihg_A          310 AKVTPPTGGMSGNAAVADGFDLAWKLAAVLQ---GQAGAGLLDTYEDERKVAAELVVAEALAIYAQRMAP-HMAEVWDKS  385 (535)
T ss_dssp             TEECCSTTSCHHHHHHHHHHHHHHHHHHHHT---TSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCG-GGTTTSCCC
T ss_pred             cccCCCccCCccccccccHHHHHHHHHHHhc---CCCcHHHHHhhHHHHHHHHHHHHHHHHHhhHhhccc-ccCcccccc
Confidence            9999999999999999999999999998642   122357999999999999999999998887766443 211111122


Q ss_pred             HHHHHHhcCCCCchhHHHhhc----------CCCCCchhhHHHHHH---------HHHHHHHHhhccCCChHH
Q 010623          429 ACFDYLSLGGIFSSGPVSLLS----------GLNPRPLILVFHFFA---------VAIYGVGRILLPFPSPYR  482 (506)
Q Consensus       429 ~~~~~~~~g~~~~~~~~~~~~----------~~~~~p~~~~~h~~~---------~~l~~~~~~l~~~~~~~~  482 (506)
                      .....+..|++|.++++...+          ...++||.|+||.|+         +||+|.+|+|++++....
T Consensus       386 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~pG~r~p~~~l~~~~~~~~~~dl~g~~f~ll~~~~~~~  458 (535)
T 3ihg_A          386 VGYPETLLGFRYRSSAVLATDDDPARVENPLTPSGRPGFRGPHVLVSRHGERLSTVDLFGDGWTLLAGELGAD  458 (535)
T ss_dssp             CCHHHHHTSBCCCSTTCCCSCCCCCSBCCTTSCCCCTTSBCCCCEEEETTEEEEGGGGCSSSEEEEECTTCHH
T ss_pred             cccceeeeCcccCCCceecCCCCCCcccccCCCCCCCCCcCCCceeecCCceeeHHHhcCCceEEEecCCccH
Confidence            233457789999998875433          235789999999987         999999999999876554

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=100.00  E-value=1.9e-45  Score=387.18  Aligned_cols=400  Identities=17%  Similarity=0.143  Sum_probs=271.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceec--ceEEEE
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVF--GYALFK  136 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~--~~~~~~  136 (506)
                      .++||+||||||+||++|+.|+++|++|+|+||.+.....+++..++++++++|+++|+.+.+.+.......  ....+.
T Consensus        25 ~~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~  104 (549)
T 2r0c_A           25 IETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVT  104 (549)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEES
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEec
Confidence            358999999999999999999999999999999988777788889999999999999999888764322111  111111


Q ss_pred             --CCce-eeeecCCc----CC-CCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEe-CCcc
Q 010623          137 --DGNR-TQISYPLE----KF-HSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKT-KAGE  206 (506)
Q Consensus       137 --~~~~-~~~~~~~~----~~-~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~-~~G~  206 (506)
                        .+.. ....++..    .. ......+.++|..+++.|.+.+.+.    ++++ +|+++++++++++ +++.+ .+|+
T Consensus       105 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~----v~~~~~v~~~~~~~~~v~-v~~~~~~~G~  179 (549)
T 2r0c_A          105 RVGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER----LRTRSRLDSFEQRDDHVR-ATITDLRTGA  179 (549)
T ss_dssp             SBTSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG----EECSEEEEEEEECSSCEE-EEEEETTTCC
T ss_pred             cCCCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh----cccCcEEEEEEEeCCEEE-EEEEECCCCC
Confidence              1222 11222110    00 1122346788999999999999875    6667 4999998888665 55554 3476


Q ss_pred             EEEEEcCeEEeecCCcccchhhccCCCCCCccceeeE--EEeccCCC-----CCCeeEEEecCC-CcEEEEecCCCeEEE
Q 010623          207 ELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGL--VLENCNLP-----FENHGHVVLADP-SPILFYPISSNEVRC  278 (506)
Q Consensus       207 ~~~i~a~~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~--~~~~~~~~-----~~~~~~~~~~~~-~~~~~~p~~~~~~~~  278 (506)
                      ..+++||+||+|||.+|.+|++++++..+.......+  .+...+++     .+...++++.++ +.++++|++++. .|
T Consensus       180 ~~~i~a~~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~-~~  258 (549)
T 2r0c_A          180 TRAVHARYLVACDGASSPTRKALGIDAPPRHRTQVFRNILFRAPELRSLLGERAALFFFLMLSSSLRFPLRALDGRG-LY  258 (549)
T ss_dssp             EEEEEEEEEEECCCTTCHHHHHHTCCCCBSSCCEEEEEEEEECTTHHHHHGGGCCSEEEEEEETTEEEEEEESSSSS-EE
T ss_pred             EEEEEeCEEEECCCCCcHHHHHcCCCCCCCcccceEEEEEEECCchHHhcCCCCceEEEEECCCCcEEEEEEECCCc-EE
Confidence            5678999999999999999999998765544322222  22111110     111223444555 678899997643 44


Q ss_pred             EEEecCCCCCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcch
Q 010623          279 LVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGG  358 (506)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~Gq  358 (506)
                      .+.++.+... .+.+++.+.+++.+.+.++.+          ......|+.....+.+|..|||+|+|||||.++|++||
T Consensus       259 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~----------~~~~~~~~~~~~~a~~~~~grv~L~GDAAH~~~P~~Gq  327 (549)
T 2r0c_A          259 RLTVGVDDAS-KSTMDSFELVRRAVAFDTEIE----------VLSDSEWHLTHRVADSFSAGRVFLTGDAAHTLSPSGGF  327 (549)
T ss_dssp             EEEEECSTTC-CSCCCHHHHHHHHBCSCCCCE----------EEEEEEEEECCEECSCSEETTEEECGGGTEECCCGGGH
T ss_pred             EEEecCCCCC-CCHHHHHHHHHHHhCCCCcee----------EEEEecchhHhhhHHhhcCCcEEEEccccccCCCccCC
Confidence            4444422212 566777788877665422211          11234566666778899999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCC--------CchhHHHHHHHH
Q 010623          359 GMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSAS--------PDEARKEMRQAC  430 (506)
Q Consensus       359 G~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~--------~~~~~~~~r~~~  430 (506)
                      |+|+||+||.+|+|+|+.+.+   +.+.+++|++|+++|+|++..++..+..+.+.+...        .++....+|+.+
T Consensus       328 G~n~gi~DA~~La~~La~~l~---g~a~~~lL~~Y~~eR~~~a~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~  404 (549)
T 2r0c_A          328 GMNTGIGSAADLGWKLAATLR---GWAGPGLLATYEEERRPVAITSLEEANVNLRRTMDRELPPGLHDDGPRGERIRAAV  404 (549)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH---TCSCTTTTHHHHHHHHHHHHHHHHC----------CCCCTTTTCCSHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCcchHHHHHHH
Confidence            999999999999999997642   122357999999999999999999988887776531        255666777776


Q ss_pred             HHHHh--------------cCCCCchhHHHhhcC----------CCCCchhhHHHHHH------HHHHHHHHhhccCCC
Q 010623          431 FDYLS--------------LGGIFSSGPVSLLSG----------LNPRPLILVFHFFA------VAIYGVGRILLPFPS  479 (506)
Q Consensus       431 ~~~~~--------------~g~~~~~~~~~~~~~----------~~~~p~~~~~h~~~------~~l~~~~~~l~~~~~  479 (506)
                      .+++.              .+.+|..+++. ..+          ..+.||.|+||.|+      .|+++.+|+|+.+..
T Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~Y~~~~l~-~~~~~~~~~~~~~~~~~~G~r~p~~~l~~g~~l~d~~~~~~~ll~~~~  482 (549)
T 2r0c_A          405 AEKLERSGARREFDAPGIHFGHTYRSSIVC-GEPETEVATGGWRPSARPGARAPHAWLTPTTSTLDLFGRGFVLLSFGT  482 (549)
T ss_dssp             HHHHHHTTGGGGGSCHHHHHCCCCCSTTSC-CC---------CCCCCCTTSBCCCCBSSSSCBGGGGCSSSEEEEEESC
T ss_pred             HHHHHhhcccccccccceEeccEeCCcccc-CCCCCCccccccCCCCCCCCcCCCcEeCCCcCHHHHcCCceEEEEcCC
Confidence            65543              34566655443 111          13689999999875      788888999987653

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=100.00  E-value=2.3e-43  Score=358.87  Aligned_cols=362  Identities=17%  Similarity=0.134  Sum_probs=258.0

Q ss_pred             ccCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecc
Q 010623           52 ALNGECPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFG  131 (506)
Q Consensus        52 ~~~~~~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~  131 (506)
                      ..+.+.+.++||+||||||+||++|+.|+++|++|+|+||.+......++..+++++.+.|+++|+++.+.... .....
T Consensus        15 ~~~~~~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~-~~~~~   93 (407)
T 3rp8_A           15 GENLYFQGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFG-GPLRR   93 (407)
T ss_dssp             --------CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHS-CCCCE
T ss_pred             CCcccCCCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhc-CCCcc
Confidence            33344456799999999999999999999999999999999877777788889999999999999998887643 23445


Q ss_pred             eEEEECC-ceeeeecCCcCC--CCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccE
Q 010623          132 YALFKDG-NRTQISYPLEKF--HSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEE  207 (506)
Q Consensus       132 ~~~~~~~-~~~~~~~~~~~~--~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~  207 (506)
                      +.++... ......++....  ......+.++|..|.+.|.+.+.+   ++++++ +|++++.++++   |+++..+|+ 
T Consensus        94 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~---~~i~~~~~v~~i~~~~~~---v~v~~~~g~-  166 (407)
T 3rp8_A           94 MAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR---DSVQFGKRVTRCEEDADG---VTVWFTDGS-  166 (407)
T ss_dssp             EEEEETTTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG---GGEEESCCEEEEEEETTE---EEEEETTSC-
T ss_pred             eEEEECCCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc---CEEEECCEEEEEEecCCc---EEEEEcCCC-
Confidence            5555543 222222222111  012345678999999999999976   556677 49999998884   566678887 


Q ss_pred             EEEEcCeEEeecCCcccchhhc-cCCCCCCccceeeEEEe---ccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEec
Q 010623          208 LTAYAPLTIVCDGCFSNLRRSL-CNPKVDVPSCFVGLVLE---NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIP  283 (506)
Q Consensus       208 ~~i~a~~vV~AdG~~S~vR~~l-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  283 (506)
                       +++||+||+|||.+|.+|+.+ +.........+..+...   ....+.......+++++++++++|+++++..|.+..+
T Consensus       167 -~~~a~~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  245 (407)
T 3rp8_A          167 -SASGDLLIAADGSHSALRPWVLGFTPQRRYAGYVNWNGLVEIDEALAPGDQWTTFVGEGKQVSLMPVSAGRFYFFFDVP  245 (407)
T ss_dssp             -EEEESEEEECCCTTCSSHHHHHSSCCCCEEEEEEEEEEEEECCTTTCCTTEEEEEEETTEEEEEEEETTTEEEEEEEEE
T ss_pred             -EEeeCEEEECCCcChHHHHHhcCCCCCCcccCcEEEEEEEecccccCCCCceEEEECCCcEEEEEEcCCCeEEEEEEeC
Confidence             467999999999999999999 54322222222222111   1122333445566788889999999999888888776


Q ss_pred             CCCCCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCC--eEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhH
Q 010623          284 GQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGN--IKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMT  361 (506)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n  361 (506)
                      .......+.++..+.+.+.+. .+.+.+.+.+........  ...++...  ..+|..+||+|+|||||.++|++|||+|
T Consensus       246 ~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~rv~LvGDAAh~~~P~~GqG~~  322 (407)
T 3rp8_A          246 LPAGLAEDRDTLRADLSRYFA-GWAPPVQKLIAALDPQTTNRIEIHDIEP--FSRLVRGRVALLGDAGHSTTPDIGQGGC  322 (407)
T ss_dssp             CCTTCSCCTTTHHHHHHHHTT-TCCHHHHHHHHHSCGGGCEEEEEEECCC--CSCCEETTEEECGGGTCCCCGGGSCHHH
T ss_pred             CCcCCCCCchhHHHHHHHHhc-CCChHHHHHHHcCCccceeEEeeEecCC--CCceecCCEEEEEcccccCCcchhhhHH
Confidence            443333445566666666544 344444443322211111  33344333  3788899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 010623          362 VALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFD  432 (506)
Q Consensus       362 ~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~  432 (506)
                      +||+||.+|+++|...     + ..+++|+.|+++|++++..++..++.+.++++.. ++....+|+..+.
T Consensus       323 ~al~da~~La~~L~~~-----~-~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~-~~~~~~~R~~~l~  386 (407)
T 3rp8_A          323 AAMEDAVVLGAVFRQT-----R-DIAAALREYEAQRCDRVRDLVLKARKRCDITHGK-DMQLTEAWYQELR  386 (407)
T ss_dssp             HHHHHHHHHHHHHHSC-----C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-THHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcC-----C-CHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC-CHHHHHHHHHHHh
Confidence            9999999999999853     1 4578999999999999999999999999999886 8888888988765

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=100.00  E-value=2e-44  Score=385.97  Aligned_cols=392  Identities=19%  Similarity=0.214  Sum_probs=269.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH-----CCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEE
Q 010623           60 DADVIVVGAGVAGAALANTLAK-----DGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYAL  134 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~-----~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~  134 (506)
                      ++||+||||||+||++|+.|++     +|++|+||||.+.+...+++..++++++++|+++|+++.+.... .+...+.+
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~~~gra~~l~~~tle~l~~lGl~~~l~~~~-~~~~~~~~   86 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLADKILSEA-NDMSTIAL   86 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHHHHHTTC-BCCCEEEE
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCCCCCceeEEChHHHHHHHHCCCHHHHHHhc-cccceEEE
Confidence            5899999999999999999999     99999999999877777788889999999999999999887643 34455666


Q ss_pred             EECCc---eee-eecCCcCCC-CCcccccccchHHHHHHHHHHHcCC--CEEEEece-EEEEEeeC--------CeEEEE
Q 010623          135 FKDGN---RTQ-ISYPLEKFH-SDVAGRGFHNGRFVQRLREKAASLP--NVRLEQGT-VTSLLEEK--------GTIKGV  198 (506)
Q Consensus       135 ~~~~~---~~~-~~~~~~~~~-~~~~~~~i~~~~l~~~L~~~~~~~~--~v~i~~~~-v~~~~~~~--------~~v~~v  198 (506)
                      |....   ... ..++..... .......++|..+++.|.+.+.+.+  ++++++++ ++++++++        ..|+ +
T Consensus        87 ~~~~~~g~i~~~~~~~~~~~~~~~~~~~~l~q~~le~~L~~~~~~~g~~~v~v~~g~~v~~~~~d~~~~~~~~~~~V~-v  165 (665)
T 1pn0_A           87 YNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYPVT-M  165 (665)
T ss_dssp             EEECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEECSEEEEEEEECGGGTTCTTCCCEE-E
T ss_pred             EeCCCCcceEeecccCcccCCCCCCeeEEeeHHHHHHHHHHHHHhcCCCceEEEeCCEEEEEEecCcccccCCCCCEE-E
Confidence            65432   111 111111111 1223456899999999999998874  47888885 99998764        2333 5


Q ss_pred             EEEe----------------------------------------CCccEEEEEcCeEEeecCCcccchhhccCCCCCCcc
Q 010623          199 QYKT----------------------------------------KAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPS  238 (506)
Q Consensus       199 ~v~~----------------------------------------~~G~~~~i~a~~vV~AdG~~S~vR~~l~~~~~~~~~  238 (506)
                      ++.+                                        .+|+..+++||+||+|||++|.||++++++..+...
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~G~~~~i~A~~VVGADG~~S~VR~~lg~~~~g~~~  245 (665)
T 1pn0_A          166 TLRYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVRRTLGFEMIGEQT  245 (665)
T ss_dssp             EEEECCGGGSCCCTTCCCCCSSSCCCHHHHHHHHHTSCCCSTTCCTTCEEEEEEEEEEECCCTTCHHHHHHTCCCEEEEE
T ss_pred             EEEecccccccccccccccccccccccccccccccccccccccCCCCceEEEEeCEEEeccCCCCHHHHhcCCCCCCCCc
Confidence            5554                                        356656789999999999999999999987654433


Q ss_pred             ceeeEEEe---ccCCCCCCeeE-EEecCCCcEEEEecCCCeEEEEEEecCCC-------CCCCCchHHHHHHHHhcCCCC
Q 010623          239 CFVGLVLE---NCNLPFENHGH-VVLADPSPILFYPISSNEVRCLVDIPGQK-------VPSISNGEMANYLKTVVAPQI  307 (506)
Q Consensus       239 ~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  307 (506)
                      .....+..   ..+.|...... ++..++++++++|.+++..++++..+...       ....+.+++.+.+++.+.+..
T Consensus       246 ~~~~~v~d~~~~~~~p~~~~~~~~~~~~~g~~~~~P~~~~~~r~~~~~~~~~~~~~~~~~~~~t~e~~~~~~~~~~~~~~  325 (665)
T 1pn0_A          246 DYIWGVLDAVPASNFPDIRSRCAIHSAESGSIMIIPRENNLVRFYVQLQARAEKGGRVDRTKFTPEVVIANAKKIFHPYT  325 (665)
T ss_dssp             EEEEEEEEEEEECCCTTTTSEEEEECSSSCEEEEEECSTTCEEEEEEECC----------CCCCHHHHHHHHHHHHTTSC
T ss_pred             cEEEEEEEEEECCCCCCcceEEEEEeCCCceEEEEEcCCCEEEEEEEeCCccccccccCcCCCCHHHHHHHHHHHhCccc
Confidence            22211111   22334322222 22235788999999998888887765432       123455666666655444321


Q ss_pred             ChhhhHHHHhhhcCCCeEEecCCccCCCCCC-CCcEEEEccCCCCCCCCcchhhHHHHHHHHHHHHHhhhcCCCCChHHH
Q 010623          308 PREIFHSFVAAVDGGNIKTMPNRSMPAAPYP-TPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPAL  386 (506)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~  386 (506)
                      . ++.       ....+..+++..+.+.+|. .|||+|+|||||.++|++|||||+||+||.+|+|+|+.+.+   +.+.
T Consensus       326 ~-~~~-------~~~~~~~~~~~~r~a~~~~~~gRV~L~GDAAH~~~P~~GqG~N~gi~DA~nLawkLa~vl~---g~a~  394 (665)
T 1pn0_A          326 F-DVQ-------QLDWFTAYHIGQRVTEKFSKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLT---GRAK  394 (665)
T ss_dssp             C-EEE-------EEEEEEEEEEEEEECSCSEETTTEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHHHT---TCBC
T ss_pred             C-cee-------eEEEEEeeeccceehhhcccCCCEEEEECccccCCCcccCCcchhHHHHHHHHHHHHHHHc---CCCc
Confidence            1 110       0112334555566788998 79999999999999999999999999999999999997653   2234


Q ss_pred             HHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCch--------hHHHHHHHHH---H-HHhcCCCCchhHHHhhc-----
Q 010623          387 CNYLESFYTLRKPVASTINTLAGALYQVFSASPDE--------ARKEMRQACF---D-YLSLGGIFSSGPVSLLS-----  449 (506)
Q Consensus       387 ~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~--------~~~~~r~~~~---~-~~~~g~~~~~~~~~~~~-----  449 (506)
                      +++|++|+++|++++..++..++.+.++|...+..        ....+.+...   + ....+..|..+++....     
T Consensus       395 ~~lL~tYe~eR~p~a~~~i~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~Y~~s~l~~~~~~~~~  474 (665)
T 1pn0_A          395 RDILKTYEEERQPFAQALIDFDHQFSRLFSGRPAKDVADEMGVSMDVFKEAFVKGNEFASGTAINYDENLVTDKKSSKQE  474 (665)
T ss_dssp             GGGGHHHHHHHHHHHHHHHHHHHHHHHHHHSCBCSSTTCTTSBCHHHHHHHHHHHHHHHTTCCCCCCSBTTBCSTTCCGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccchhHHHHHHHHHHhhccccccCcccCCCcccCCCccccc
Confidence            57999999999999999999999998988754210        1222322221   1 23456778776653210     


Q ss_pred             -CCCCCchhhHHHHHH
Q 010623          450 -GLNPRPLILVFHFFA  464 (506)
Q Consensus       450 -~~~~~p~~~~~h~~~  464 (506)
                       ....+||.|+||+|+
T Consensus       475 ~~~~~~~G~r~p~~~~  490 (665)
T 1pn0_A          475 LAKNCVVGTRFKSQPV  490 (665)
T ss_dssp             GBTTSCTTSBCCCCEE
T ss_pred             cCCCCCCcCCCCCCeE
Confidence             123579999999875

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=100.00  E-value=3e-43  Score=370.38  Aligned_cols=399  Identities=18%  Similarity=0.171  Sum_probs=272.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG  138 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (506)
                      +++||+||||||+||++|+.|+++|++|+||||.+.+....++..++++++++|+++|+++.+..........  .+ .+
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~--~~-~~  124 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGL--PF-AG  124 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBC--CB-TT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCc--ee-CC
Confidence            5689999999999999999999999999999999888778888999999999999999999887654322110  01 11


Q ss_pred             ceeeeecCCcCC-CCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623          139 NRTQISYPLEKF-HSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI  216 (506)
Q Consensus       139 ~~~~~~~~~~~~-~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV  216 (506)
                      . ....+..... ...+..+.+++..+++.|.+.+.+. +++++++ +|++++++++++. |++.+.+|+ .+++||+||
T Consensus       125 ~-~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~-gv~i~~~~~v~~l~~~~~~v~-v~~~~~~G~-~~~~a~~vV  200 (570)
T 3fmw_A          125 I-FTQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREA-GAEIPRGHEVTRLRQDAEAVE-VTVAGPSGP-YPVRARYGV  200 (570)
T ss_dssp             B-CTTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHH-TEECCBSCEEEECCBCSSCEE-EEEEETTEE-EEEEESEEE
T ss_pred             c-ccccccccccCCCCCeeEEeCHHHHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCeEE-EEEEeCCCc-EEEEeCEEE
Confidence            1 0001111111 1223456789999999999999887 7899888 4999998887654 555557774 457899999


Q ss_pred             eecCCcccchhhccCCCCCCccceeeEEEeccCCCCCC-eeEEEecCCCcEEE-EecCCCeE-EEEEEecCCC----CCC
Q 010623          217 VCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFEN-HGHVVLADPSPILF-YPISSNEV-RCLVDIPGQK----VPS  289 (506)
Q Consensus       217 ~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~p~~~~~~-~~~~~~~~~~----~~~  289 (506)
                      +|||.+|.+|++++++.++..+...+++.. ...+.+. ...+.+.+.+++++ +|++++.. ++++..+...    ...
T Consensus       201 ~ADG~~S~vR~~lGi~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~G~~~~~~P~~~g~~~~i~~~~~~~~~~~~~~~  279 (570)
T 3fmw_A          201 GCDGGRSTVRRLAADRFPGTEATVRALIGY-VTTPEREVPRRWERTPDGILVLAFPPEGGLGPGWSSSSTGHSPAADEGP  279 (570)
T ss_dssp             ECSCSSCHHHHHTTCCCCCCCCCEEEEEEE-CCCCSCSSCCCCCCCCSSCEEECCCC------CEEEEEESCC-----CC
T ss_pred             EcCCCCchHHHHcCCCCccceeeeEEEEEE-EEecCCCcceEEEecCCEEEEEEeecCCCeEEEEEEEeCCCCccccccC
Confidence            999999999999998877666655555443 2222221 11113455667777 79998876 6777654322    122


Q ss_pred             CCchHHHHHHHHhcCCCCChhhhHHHHhhhcCC-CeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHH
Q 010623          290 ISNGEMANYLKTVVAPQIPREIFHSFVAAVDGG-NIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIV  368 (506)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~  368 (506)
                      .+.+++.+.+++.+...+.         ..+.. ....|+.....+.+|..|||+|+|||||.++|++|||+|+||+||.
T Consensus       280 ~~~~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~a~~~~~grv~LvGDAAH~~~P~~GqG~n~gl~DA~  350 (570)
T 3fmw_A          280 VTLEDLGAAVARVRGTPLT---------LTEPVSWLSRFGDASRQAKRYRSGRVLLAGDAAHVHFPIGGQGLNTGLQDAV  350 (570)
T ss_dssp             CCHHHHHHHTTSSSSCCCC---------CCSCCEEEEEECCCCEECSCSEETTEEECGGGTEECCCCSSCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhhcccc---------cceeeeeeEEeecccccccccccCCEEEEEecceecCCCcCcCHhHHHHHHH
Confidence            3444555444433221111         11122 4567888888899999999999999999999999999999999999


Q ss_pred             HHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHh-------------
Q 010623          369 ILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLS-------------  435 (506)
Q Consensus       369 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~-------------  435 (506)
                      +|+|+|+.+..   +.+.+++|++|+++|++++..++..++.+.++|... .+....+|+..+..+.             
T Consensus       351 ~La~~La~~~~---g~~~~~lL~~Ye~eR~~~~~~~~~~s~~~~~l~~~~-~~~~~~lR~~~~~l~~~~~~~~~~~~~~~  426 (570)
T 3fmw_A          351 NLGWKLAARVR---GWGSEELLDTYHDERHPVAERVLLNTRAQLALMRPD-EQHTTPLRGFVEELLGTDEVNRYFTGMIT  426 (570)
T ss_dssp             HHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSC-TTTHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHc---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence            99999987632   123468999999999999999999999999998764 3437788887765531             


Q ss_pred             -cCCCCchhHHHhhcC-CCCCchhhHHHHH----------HHHHHHHH-HhhccCCC
Q 010623          436 -LGGIFSSGPVSLLSG-LNPRPLILVFHFF----------AVAIYGVG-RILLPFPS  479 (506)
Q Consensus       436 -~g~~~~~~~~~~~~~-~~~~p~~~~~h~~----------~~~l~~~~-~~l~~~~~  479 (506)
                       .+.+|..+ ....+. ..+.+|.++|++.          +.+++..+ |+|+.+..
T Consensus       427 g~~~~Y~~~-~~~~~~~~~~~~G~r~pd~~l~~~~g~~~~l~~~l~~~~~~ll~~~~  482 (570)
T 3fmw_A          427 GTDVRYATF-APAASARPHPWPGRFAGGLVLSRPSGEPVPVAELLRSARPLLLDLAG  482 (570)
T ss_dssp             STTCCCCCS-CC----CCCSSTTCBCTTCEECCSTTCCEEHHHHSTTCCCEEECSSC
T ss_pred             CCCcccCCC-CCCCCCCCCccccCcCCCceeecCCCcceeHHHHhcCCeEEEEEecC
Confidence             12233221 000001 2355677777763          46776554 77776554

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=100.00  E-value=3.9e-43  Score=375.50  Aligned_cols=408  Identities=18%  Similarity=0.181  Sum_probs=267.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEE
Q 010623           58 PFDADVIVVGAGVAGAALANTLAK-DGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFK  136 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~-~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  136 (506)
                      +.++||+||||||+||++|+.|++ +|++|+|+||.+.+...+++..++++++++|+++|+.+.+..... ......++.
T Consensus        30 ~~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~-~~~~~~~~~  108 (639)
T 2dkh_A           30 PSQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEAC-WINDVTFWK  108 (639)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSE-EECEEEEEE
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcc-cccceEEEC
Confidence            346899999999999999999999 999999999998877777888999999999999999988766432 334455554


Q ss_pred             C-----Cceeee-ecCCcCCC-CCcccccccchHHHHHHHHHHHcCC-CEEEEece-EEEEEeeCC---eEEEEEEEe--
Q 010623          137 D-----GNRTQI-SYPLEKFH-SDVAGRGFHNGRFVQRLREKAASLP-NVRLEQGT-VTSLLEEKG---TIKGVQYKT--  202 (506)
Q Consensus       137 ~-----~~~~~~-~~~~~~~~-~~~~~~~i~~~~l~~~L~~~~~~~~-~v~i~~~~-v~~~~~~~~---~v~~v~v~~--  202 (506)
                      .     +..... .++..... .......++|..+++.|.+.+.+.+ ++++++++ |++++++++   ..+.|++.+  
T Consensus       109 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~  188 (639)
T 2dkh_A          109 PDPGQPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCD  188 (639)
T ss_dssp             ECTTSTTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECS
T ss_pred             CCCCCCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEecc
Confidence            2     221111 11111111 1223457899999999999999986 45888875 999988753   122366554  


Q ss_pred             --CCccEEEEEcCeEEeecCCcccchhhccCCCCCCcccee-eEEE--eccCCCCCCeeEEEecCCCcEEEEecCCC-eE
Q 010623          203 --KAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFV-GLVL--ENCNLPFENHGHVVLADPSPILFYPISSN-EV  276 (506)
Q Consensus       203 --~~G~~~~i~a~~vV~AdG~~S~vR~~l~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~  276 (506)
                        .+|+..+++||+||+|||++|.+|++++++..+...... ++.-  ...+.+.......+..++++++++|.+++ ..
T Consensus       189 ~~~~G~~~~i~a~~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~P~~~~~~~  268 (639)
T 2dkh_A          189 AAHAGQIETVQARYVVGCDGARSNVRRAIGRQLVGDSANQAWGVMDVLAVTDFPDVRYKVAIQSEQGNVLIIPREGGHLV  268 (639)
T ss_dssp             GGGTTCEEEEEEEEEEECCCTTCHHHHHTTCCCEECSCSCCEEEEEEEEEECCTTTTSEEEEEETTEEEEEEECTTSSCE
T ss_pred             ccCCCCeEEEEeCEEEECCCcchHHHHHhCCCCCCCCccceEEEEEEEEccCCCccceeEEEEcCCceEEEEEcCCCcEE
Confidence              367666789999999999999999999986544332211 2211  12233432222222236778899999888 67


Q ss_pred             EEEEEecC--CC----CCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCC------------
Q 010623          277 RCLVDIPG--QK----VPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYP------------  338 (506)
Q Consensus       277 ~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  338 (506)
                      ++++..+.  ..    ....+.+++.+.+++.+.+... ++.       ....+..++.....+.+|.            
T Consensus       269 r~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  340 (639)
T 2dkh_A          269 RFYVEMDKLDADERVASRNITVEQLIATAQRVLHPYKL-EVK-------NVPWWSVYEIGQRICAKYDDVVDAVATPDSP  340 (639)
T ss_dssp             EEEEECC-----------CCCHHHHHHHHHHHHTTSCE-EEE-------EEEEEEEECCCCEECSCSBSCCCSSCCTTSC
T ss_pred             EEEEECCCcCcccccccCCCCHHHHHHHHHHHhCcccC-cce-------eeeEEEecccccchhhhhhccccccccccCc
Confidence            77776553  11    1224455565655554433110 010       0112234555555667776            


Q ss_pred             CCcEEEEccCCCCCCCCcchhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCC
Q 010623          339 TPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSAS  418 (506)
Q Consensus       339 ~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~  418 (506)
                      .|||+|+|||||.++|++|||+|+||+||.+|+|+|+.+.+   +.+.+++|++|+++|++++..++..++.+.+++...
T Consensus       341 ~gRV~L~GDAAH~~~P~~GqG~n~ai~DA~nLawkLa~vl~---g~a~~~lL~~Ye~eR~~~a~~~~~~s~~~~~~~~~~  417 (639)
T 2dkh_A          341 LPRVFIAGDACHTHSPKAGQGMNFSMQDSFNLGWKLAAVLR---KQCAPELLHTYSSERQVVAQQLIDFDREWAKMFSDP  417 (639)
T ss_dssp             CCCEEECGGGTEECCGGGCCTTHHHHHHHHHHHHHHHHHHT---TSBCGGGGHHHHHHHHHHHHHHHHHHHHSCC-----
T ss_pred             cCcEEEEecccccCCCcccccchhhHHHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            89999999999999999999999999999999999998653   223457999999999999999999988877777653


Q ss_pred             Cchh------HHHHHHH----HHHHHhcCCCCchhHHHhhc-----CCCCCchhhHHHHHH-----------HHHHH--H
Q 010623          419 PDEA------RKEMRQA----CFDYLSLGGIFSSGPVSLLS-----GLNPRPLILVFHFFA-----------VAIYG--V  470 (506)
Q Consensus       419 ~~~~------~~~~r~~----~~~~~~~g~~~~~~~~~~~~-----~~~~~p~~~~~h~~~-----------~~l~~--~  470 (506)
                      +...      ...+.+.    .......+.+|..+++....     ....+||.|+||.|+           .|++.  .
T Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~Y~~s~l~~~~~~~~~~~~~~~G~r~p~~~~~~~~~g~~~~l~~~~~~~g  497 (639)
T 2dkh_A          418 AKEGGQGGVDPKEFQKYFEQHGRFTAGVGTHYAPSLLTGQAKHQALASGFTVGMRFHSAPVVRVCDAKPVQLGHCGKADG  497 (639)
T ss_dssp             ---------CHHHHHHHHHHHHHHHTTCCCCCCSSSSSCCCTTGGGBTTSCTTSBCCCCEEEETTTCCEEEGGGGCCSSS
T ss_pred             CcccccccccHHHHHHHHHHhccccccCCcccCCCCccCCCCccccCCCCCCcCCCCCCeEEecCCCCEEEHHHhhccCC
Confidence            2110      1122221    11123456778776553211     122569999999875           45553  3


Q ss_pred             HHhhccC
Q 010623          471 GRILLPF  477 (506)
Q Consensus       471 ~~~l~~~  477 (506)
                      .|+|+.+
T Consensus       498 ~~~ll~~  504 (639)
T 2dkh_A          498 RWRLYAF  504 (639)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEEe
Confidence            5777653

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=100.00  E-value=1.1e-41  Score=345.66  Aligned_cols=359  Identities=21%  Similarity=0.235  Sum_probs=252.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      ++||+||||||+|+++|+.|+++|++|+|+||.+......++..+++++.+.|+++|+++.+.... .......++....
T Consensus         6 ~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~-~~~~~~~~~~~~g   84 (399)
T 2x3n_A            6 HIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRG-GRVRHELEVYHDG   84 (399)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTT-CEEECEEEEEETT
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhC-CCcceeEEEeCCC
Confidence            489999999999999999999999999999999776666778889999999999999998876533 2344555554322


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                      .....++.........++.++|..+.+.|.+.+.+.+++++++++ |++++.+++++++ .++..+|+  +++||+||+|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g-~v~~~~g~--~~~ad~vV~A  161 (399)
T 2x3n_A           85 ELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAID-QVRLNDGR--VLRPRVVVGA  161 (399)
T ss_dssp             EEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEE-EEEETTSC--EEEEEEEEEC
T ss_pred             CEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEE-EEEECCCC--EEECCEEEEC
Confidence            222222222222233457789999999999999987689998885 9999988775420 45567786  4679999999


Q ss_pred             cCCcccchhhccCCCCCC--ccce--eeEEEe-ccCCCCCCeeEEEecC-CCcEEEEecCCCeEEEEEEecCCCCC----
Q 010623          219 DGCFSNLRRSLCNPKVDV--PSCF--VGLVLE-NCNLPFENHGHVVLAD-PSPILFYPISSNEVRCLVDIPGQKVP----  288 (506)
Q Consensus       219 dG~~S~vR~~l~~~~~~~--~~~~--~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~----  288 (506)
                      ||.+|.+|+.++......  ....  .++... ..+.+.  .. .++.+ +++++++|++++...|.+.++.+..+    
T Consensus       162 dG~~s~vr~~lg~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  238 (399)
T 2x3n_A          162 DGIASYVRRRLLDIDVERRPYPSPMLVGTFALAPCVAER--NR-LYVDSQGGLAYFYPIGFDRARLVVSFPREEARELMA  238 (399)
T ss_dssp             CCTTCHHHHHTSCCCCCCCCCSSCEEEEEEECCHHHHHC--EE-EEECTTSCEEEEEEETTTEEEEEEECCHHHHHHHHH
T ss_pred             CCCChHHHHHhCCCccccCCCCCCceEEEEEEecCCCCC--cc-EEEcCCCcEEEEEEcCCCEEEEEEEeCccccccccc
Confidence            999999999998754333  2222  333221 111222  23 66677 88999999998766666644422110    


Q ss_pred             CCCchHHHHHHHHhcCCCCChhhh-HHHHhhhcCCCeEEecCCc-cCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHH
Q 010623          289 SISNGEMANYLKTVVAPQIPREIF-HSFVAAVDGGNIKTMPNRS-MPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSD  366 (506)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~D  366 (506)
                      ..+.+++.+.+..     +.+.+. ..+ +......+..+++.. ....+|..+||+|+|||||.++|++|||+|+||+|
T Consensus       239 ~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~rv~lvGDAAh~~~P~~GqG~~~al~d  312 (399)
T 2x3n_A          239 DTRGESLRRRLQR-----FVGDESAEAI-AAVTGTSRFKGIPIGYLNLDRYWADNVAMLGDAIHNVHPITGQGMNLAIED  312 (399)
T ss_dssp             STTSHHHHHHHHT-----TCCGGGHHHH-HTCCCSTTCEECCCCCEECSCSEETTEEECGGGTEECCGGGCCHHHHHHHH
T ss_pred             cCCHHHHHHHHhh-----cCCcchhhHH-hcCCccceEEechhhcccccccccCcEEEEechhccCCCcccccHHHHHHH
Confidence            1234455555542     233332 222 222222446677766 56788999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHh
Q 010623          367 IVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLS  435 (506)
Q Consensus       367 a~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~  435 (506)
                      |.+|+++|......  +.+.+++|++|+++|++++..++..++.+.+++... ++....+ +..+..+.
T Consensus       313 a~~La~~L~~~~~~--~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~-~~~~~~~-~~~~~~~~  377 (399)
T 2x3n_A          313 ASALADALDLALRD--ACALEDALAGYQAERFPVNQAIVSYGHALATSLEDR-QRFAGVF-DTALQGSS  377 (399)
T ss_dssp             HHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH-HHHHHHH-HC------
T ss_pred             HHHHHHHHHhhhcc--cchHHHHHHHHHHHhccHHHHHHHHHHHhhhhhccc-CchHHHH-HHHHhhhc
Confidence            99999999876421  223578999999999999999999999999988765 6666666 76665543

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=100.00  E-value=1.1e-40  Score=339.19  Aligned_cols=341  Identities=16%  Similarity=0.182  Sum_probs=213.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc--ccccccchHHHHHHhCchhHHhhcccc--e-ecceEEE
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIV--GELLQPGGYLKLIELGLEDCVEQIDAQ--R-VFGYALF  135 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~--g~~l~~~~~~~l~~~g~~~~~~~~~~~--~-~~~~~~~  135 (506)
                      .+|+||||||+||++|+.|+++|++|+|+||++.+.....  +..++++++++|+++|+.+.+......  . .....++
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~   81 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRFY   81 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeEe
Confidence            6899999999999999999999999999999987766544  456789999999999998776543211  1 1112222


Q ss_pred             ECCceeee-ecCCcC---CCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEE
Q 010623          136 KDGNRTQI-SYPLEK---FHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTA  210 (506)
Q Consensus       136 ~~~~~~~~-~~~~~~---~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i  210 (506)
                      ........ ......   .........++|..|.+.|.+.+.    ..+++++ ++++++.+++  +|++.++||++  +
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~----~~v~~~~~v~~~~~~~~~--~v~v~~~dG~~--~  153 (412)
T 4hb9_A           82 NERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGLA----NTIQWNKTFVRYEHIENG--GIKIFFADGSH--E  153 (412)
T ss_dssp             CTTSCEEEC--------------CEEEEEHHHHHHHHHTTCT----TTEECSCCEEEEEECTTS--CEEEEETTSCE--E
T ss_pred             cCCcceecccCCccccccccccccceEeeHHHHHHHHHhhcc----ceEEEEEEEEeeeEcCCC--eEEEEECCCCE--E
Confidence            22211111 100000   011122346789999999887653    2366774 9999876553  35677889974  5


Q ss_pred             EcCeEEeecCCcccchhhccCCCCCCccceeeEEEec-cC------CC---CCCeeEEEec-CCCcE------------E
Q 010623          211 YAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLEN-CN------LP---FENHGHVVLA-DPSPI------------L  267 (506)
Q Consensus       211 ~a~~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~-~~------~~---~~~~~~~~~~-~~~~~------------~  267 (506)
                      +||+||+|||.+|.||+++++...........+.... ..      .+   ........+. .+...            .
T Consensus       154 ~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (412)
T 4hb9_A          154 NVDVLVGADGSNSKVRKQYLPFIERFDVGVSMIIGRARLTPALTALLPQNFRDGTPNSIVPKSPDWLFISMWRAPVNIHV  233 (412)
T ss_dssp             EESEEEECCCTTCHHHHHHSTTCCCEEEEEEEEEEEEECCHHHHHHSCGGGTSSCCEEECCSSSEEEEEEEEEEESCTTS
T ss_pred             EeeEEEECCCCCcchHHHhCCCccccccceeEEEEEEecchhhhcchhhhhccCCcceEeecCCCcceeeeeecCCceeE
Confidence            6999999999999999999876544433332222110 00      00   0000011111 11111            1


Q ss_pred             EEecCCCe--EEEEEEecC----CCCCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCc-cCCCCCCCC
Q 010623          268 FYPISSNE--VRCLVDIPG----QKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRS-MPAAPYPTP  340 (506)
Q Consensus       268 ~~p~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  340 (506)
                      .++.....  ..|.+....    +...++..+...+.+.+.+. .+.+.+.+.+ ...+...+..+.... ....+|..|
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~li-~~~~~~~~~~~~~~~~~~~~~~~~g  311 (412)
T 4hb9_A          234 EASLAEIDNFIVWVYVAATDSLPDNITDFSAEALCDLVQSRMI-SWDPSLHTLV-QQSDMENISPLHLRSMPHLLPWKSS  311 (412)
T ss_dssp             CGGGCCEEEEEEEEEEEEGGGSCTTGGGCCHHHHHHHHHHHTT-TSCHHHHHHH-HTSCTTCCEEEEEEECCCCCCCCCC
T ss_pred             EEeccCCCceEEEEEecccccccccccccchHHHHHHHHHHhc-cCChHHHHHH-Hhcccceeccchhcccccccccccc
Confidence            11111111  122222221    12223455666666766543 3455555443 233333444443332 245689999


Q ss_pred             cEEEEccCCCCCCCCcchhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 010623          341 GALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQ  413 (506)
Q Consensus       341 rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~  413 (506)
                      ||+|+|||||.|+|++|||+|+||+||.+|+|+|+.+..  ...+++++|++||++|+|++..++..|....+
T Consensus       312 rv~LiGDAAH~~~P~~GqG~n~ai~DA~~La~~L~~~~~--~~~~~~~aL~~Ye~~R~~~~~~~~~~s~~~~~  382 (412)
T 4hb9_A          312 TVTLLGDAIHNMTPMTGSGANTALRDALLLTQKLASVAS--GHEELVKAISDYEQQMRAYANEIVGISLRSAQ  382 (412)
T ss_dssp             SEEECTHHHHCSSCCSSSHHHHHHHHHHHHHHHHHHHHT--TSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEcccccCCCchhhHHHHHHHHHHHHHHHHHHHhc--CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999997643  22345789999999999999999988876544

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=100.00  E-value=2.4e-40  Score=335.18  Aligned_cols=375  Identities=19%  Similarity=0.204  Sum_probs=249.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC--CCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE--PDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD  137 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~--~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  137 (506)
                      ++||+||||||+|+++|+.|+++|++|+|+||.+..  ....++..+++++++.|+++|+++.+.+.. .+..++.++..
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~-~~~~~~~~~~~   80 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDG-LVHEGVEIAFA   80 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHC-EEESCEEEEET
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcC-CccceEEEEEC
Confidence            589999999999999999999999999999998642  123344568999999999999998887633 34455566555


Q ss_pred             CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623          138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI  216 (506)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV  216 (506)
                      +......++  .......++.+++..+.+.|.+.+.+. ++++++++ |+++.+++++...|++. .+|++.+++||+||
T Consensus        81 ~~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~~-g~~i~~~~~v~~i~~~~~~~~~v~~~-~~g~~~~~~a~~vV  156 (394)
T 1k0i_A           81 GQRRRIDLK--RLSGGKTVTVYGQTEVTRDLMEAREAC-GATTVYQAAEVRLHDLQGERPYVTFE-RDGERLRLDCDYIA  156 (394)
T ss_dssp             TEEEEECHH--HHHTSCCEEECCHHHHHHHHHHHHHHT-TCEEESSCEEEEEECTTSSSCEEEEE-ETTEEEEEECSEEE
T ss_pred             CceEEeccc--cccCCCceEEechHHHHHHHHHHHHhc-CCeEEeceeEEEEEEecCCceEEEEe-cCCcEEEEEeCEEE
Confidence            543322221  111122345678889999999998887 78888884 99998764322224442 47775568899999


Q ss_pred             eecCCcccchhhccCCCCCCccce--eeEEEeccCCCC-CCeeEEEecCCCcEEEEecCCCeEEEEEEecCCC-CCCCCc
Q 010623          217 VCDGCFSNLRRSLCNPKVDVPSCF--VGLVLENCNLPF-ENHGHVVLADPSPILFYPISSNEVRCLVDIPGQK-VPSISN  292 (506)
Q Consensus       217 ~AdG~~S~vR~~l~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~  292 (506)
                      +|||.+|.+|++++..........  .++.......+. .....+...++++.++.|..++..+|++..+... ...++.
T Consensus       157 ~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (394)
T 1k0i_A          157 GCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSATRSQYYVQVPLSEKVEDWSD  236 (394)
T ss_dssp             ECCCTTCSTGGGSCGGGCEEEEEEEEEEEEEEEESSCCSCSSCEEECCTTCCEEEEEEETTEEEEEEEECTTCCGGGCCH
T ss_pred             ECCCCCcHHHHhcCccccccccccccceeEEEecCCCCCccceEEEEcCCceEEEEecCCCcEEEEEEeCCCCCccccCH
Confidence            999999999999875421110011  111111112221 1122222344556666666667777777665432 223444


Q ss_pred             hHHHHHHHHhcCCCCChhhhHHHHhhhcCC---CeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHH
Q 010623          293 GEMANYLKTVVAPQIPREIFHSFVAAVDGG---NIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVI  369 (506)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~  369 (506)
                      ++..+.+.+.+    .....    ..+...   ....++.......+|..|||+|+|||||.++|++|||+|+||+||.+
T Consensus       237 ~~~~~~l~~~~----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~GqG~~~ai~da~~  308 (394)
T 1k0i_A          237 ERFWTELKARL----PSEVA----EKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVST  308 (394)
T ss_dssp             HHHHHHHHHTS----CHHHH----HHCCCCCEEEEEEEEEEEEEEECSEETTEEECGGGTEECCGGGTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhh----Ccccc----cccccCcceeeEEEEhhhhhccccccCCEEEEechhhcCCCcccchHHHHHHHHHH
Confidence            44444444432    22111    011111   11234444445677889999999999999999999999999999999


Q ss_pred             HHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCC--CchhHHHHHHHHHHHHhcCCCCchhHHHh
Q 010623          370 LRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSAS--PDEARKEMRQACFDYLSLGGIFSSGPVSL  447 (506)
Q Consensus       370 La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~--~~~~~~~~r~~~~~~~~~g~~~~~~~~~~  447 (506)
                      |+++|......    ..+++|+.|+++|++++..++..+..+..++...  .++....+|+..+..+...+...+..+..
T Consensus       309 La~~L~~~~~~----~~~~~L~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~  384 (394)
T 1k0i_A          309 LYRLLLKAYRE----GRGELLERYSAICLRRIWKAERFSWWMTSVLHRFPDTDAFSQRIQQTELEYYLGSEAGLATIAEN  384 (394)
T ss_dssp             HHHHHHHHHHH----CCGGGGGGHHHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHhcc----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence            99999865311    1247899999999999999998888877777643  25778889999888877665555555555


Q ss_pred             hcCC
Q 010623          448 LSGL  451 (506)
Q Consensus       448 ~~~~  451 (506)
                      ++|+
T Consensus       385 ~~g~  388 (394)
T 1k0i_A          385 YVGL  388 (394)
T ss_dssp             HSCC
T ss_pred             hcCC
Confidence            5554

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=100.00  E-value=1.1e-38  Score=324.50  Aligned_cols=361  Identities=19%  Similarity=0.212  Sum_probs=222.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRR-VHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD  137 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~-v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  137 (506)
                      .++||+||||||+||++|+.|+++|++ |+|+||.+......++..+++++++.|+++|+++.+..... +...+.++..
T Consensus         3 ~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~-~~~~~~~~~~   81 (410)
T 3c96_A            3 EPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAI-PTHELRYIDQ   81 (410)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSE-EECEEEEECT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCC-CcceEEEEcC
Confidence            468999999999999999999999999 99999998766667778899999999999999988876432 3333444433


Q ss_pred             CceeeeecCCcC-CCCCcccccccchHHHHHHHHHHHcC-CCEEEEec-eEEEEEeeCCeEEEEEEEe-CCccEEEEEcC
Q 010623          138 GNRTQISYPLEK-FHSDVAGRGFHNGRFVQRLREKAASL-PNVRLEQG-TVTSLLEEKGTIKGVQYKT-KAGEELTAYAP  213 (506)
Q Consensus       138 ~~~~~~~~~~~~-~~~~~~~~~i~~~~l~~~L~~~~~~~-~~v~i~~~-~v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~  213 (506)
                      ........+... .......+.++|..|.+.|.+.+.+. +.++++++ +|+++.+ ++++. +++.+ .+|++.+++||
T Consensus        82 ~g~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~v~-v~~~~~~~g~~~~~~ad  159 (410)
T 3c96_A           82 SGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDGRV-LIGARDGHGKPQALGAD  159 (410)
T ss_dssp             TSCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETTEE-EEEEEETTSCEEEEEES
T ss_pred             CCCEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCccE-EEEecCCCCCceEEecC
Confidence            222111111100 01112245789999999999998763 45567777 4999988 55443 44433 24755568899


Q ss_pred             eEEeecCCcccchhhccCCCCCCccceeeEEEe----ccCCCCCCeeEEEecC--CCcEEEEecCC-----C--eEEEEE
Q 010623          214 LTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE----NCNLPFENHGHVVLAD--PSPILFYPISS-----N--EVRCLV  280 (506)
Q Consensus       214 ~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~p~~~-----~--~~~~~~  280 (506)
                      +||+|||.+|.+|++++.....  ..+.+....    ...........++++.  ++.++++|+++     +  ...|.+
T Consensus       160 ~vV~AdG~~S~vR~~l~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~w~~  237 (410)
T 3c96_A          160 VLVGADGIHSAVRAHLHPDQRP--LSHGGITMWRGVTEFDRFLDGKTMIVANDEHWSRLVAYPISARHAAEGKSLVNWVC  237 (410)
T ss_dssp             EEEECCCTTCHHHHHHCTTCCC--CEEEEEEEEEEEEEESCCTTSSEEEEEECTTCCEEEEEECCHHHHTTTCEEEEEEE
T ss_pred             EEEECCCccchhHHHhcCCCCC--CCcCCeeEEEeecccccccCCCeEEEecCCCCcEEEEEecCCcccCCCCcEEEEEE
Confidence            9999999999999999754321  122222211    1111112233444543  56888999863     3  244544


Q ss_pred             EecCC------CCCCCCc-hHHHHHHHHhcCCCCCh--hhhHHHHhhhcCCCeEEecCCcc-CCCCCCCCcEEEEccCCC
Q 010623          281 DIPGQ------KVPSISN-GEMANYLKTVVAPQIPR--EIFHSFVAAVDGGNIKTMPNRSM-PAAPYPTPGALLMGDAFN  350 (506)
Q Consensus       281 ~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~rv~LvGDAAh  350 (506)
                      ..+..      ....+.. ....+++. .+.....+  .+.+.+..   ...+..+++... ..++|..|||+|+|||||
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~grv~LvGDAAh  313 (410)
T 3c96_A          238 MVPSAAVGQLDNEADWNRDGRLEDVLP-FFADWDLGWFDIRDLLTR---NQLILQYPMVDRDPLPHWGRGRITLLGDAAH  313 (410)
T ss_dssp             EEEHHHHCCCCSSCCTTCBCCHHHHHH-HHTTCCBTTBCHHHHHHT---CSEEEEEEEEECCCCSCCCBTTEEECTHHHH
T ss_pred             EecCcccccCCCccccCCCCCHHHHHH-HhcCCCCchhHHHHHHhc---CcccceeecccCCCccccccCCEEEEecccC
Confidence            43211      1112221 12222222 22221111  12222211   123445554432 357899999999999999


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHH-HHHHH--HcCCC-chhHHHH
Q 010623          351 MRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAG-ALYQV--FSASP-DEARKEM  426 (506)
Q Consensus       351 ~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~-~~~~~--~~~~~-~~~~~~~  426 (506)
                      .++|++|||+|+||+||.+|+++|...      .+.+++|++|+++|++++..++..++ ....+  +.... +....++
T Consensus       314 ~~~P~~GqG~n~ai~Da~~La~~L~~~------~~~~~~L~~Ye~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  387 (410)
T 3c96_A          314 LMYPMGANGASQAILDGIELAAALARN------ADVAAALREYEEARRPTANKIILANREREKEEWAAASRPKTEKSAAL  387 (410)
T ss_dssp             CCCSSTTCTHHHHHHHHHHHHHHHHHC------SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------
T ss_pred             CCCCccchhHHHHHHHHHHHHHHHhcc------CCHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhccCCCCHHHH
Confidence            999999999999999999999999863      13578999999999999999887776 33343  22121 2334455


Q ss_pred             HHHHHHHH
Q 010623          427 RQACFDYL  434 (506)
Q Consensus       427 r~~~~~~~  434 (506)
                      ++.+.++.
T Consensus       388 ~~~~~~~~  395 (410)
T 3c96_A          388 EAITGSYR  395 (410)
T ss_dssp             --------
T ss_pred             HHHHHHhh
Confidence            55555443

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=100.00  E-value=9.6e-38  Score=316.28  Aligned_cols=326  Identities=19%  Similarity=0.132  Sum_probs=221.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC-CCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC-
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE-PDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD-  137 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~-~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~-  137 (506)
                      ++||+||||||+||++|+.|+++|++|+|+||.+.. .....+..+++++++.|+++|+.+  .. ...+.....++.. 
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~--~~-~~~~~~~~~~~~~~   81 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVEL--DS-ISVPSSSMEYVDAL   81 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCG--GG-TCBCCCEEEEEETT
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCcc--cc-ccccccceEEEecC
Confidence            589999999999999999999999999999998764 334556678999999999999987  22 1223334444443 


Q ss_pred             CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623          138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI  216 (506)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV  216 (506)
                      ........+.       ....+++..+.+.|.+.+   +++++++++ |+++.+++++   ++++..+|+  +++||+||
T Consensus        82 ~g~~~~~~~~-------~~~~~~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~---v~v~~~~g~--~~~ad~vV  146 (397)
T 2vou_A           82 TGERVGSVPA-------DWRFTSYDSIYGGLYELF---GPERYHTSKCLVGLSQDSET---VQMRFSDGT--KAEANWVI  146 (397)
T ss_dssp             TCCEEEEEEC-------CCCEEEHHHHHHHHHHHH---CSTTEETTCCEEEEEECSSC---EEEEETTSC--EEEESEEE
T ss_pred             CCCccccccC-------cccccCHHHHHHHHHHhC---CCcEEEcCCEEEEEEecCCE---EEEEECCCC--EEECCEEE
Confidence            2221111111       012356778888998876   367788875 9999988774   456677886  46799999


Q ss_pred             eecCCcccchhhccCCCCCCccceeeEEEe-----ccCCCCC------CeeEEEecCCCcEEEEecCCC------eEEEE
Q 010623          217 VCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-----NCNLPFE------NHGHVVLADPSPILFYPISSN------EVRCL  279 (506)
Q Consensus       217 ~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-----~~~~~~~------~~~~~~~~~~~~~~~~p~~~~------~~~~~  279 (506)
                      +|||.+|.+|++++ +..   ..+.+....     ....+..      ....+++++++.+.++|++++      ...|.
T Consensus       147 ~AdG~~S~vr~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  222 (397)
T 2vou_A          147 GADGGASVVRKRLL-GIE---PTYAGYVTWRGVLQPGEVADDVWNYFNDKFTYGLLDDGHLIAYPIPGRENAESPRLNFQ  222 (397)
T ss_dssp             ECCCTTCHHHHHHH-CCC---CEEEEEEEEEEEECTTSSCHHHHHHHTTEEEEEEETTEEEEEEEECCSSTTSCCEEEEE
T ss_pred             ECCCcchhHHHHhc-cCC---CCccceEEEEEEeeccccChhhhhhhcCceeEEecCCCEEEEEECCCCCCccceeEEEE
Confidence            99999999999998 532   122222111     1122211      123445566677888888754      45566


Q ss_pred             EEecCCCCC---CC-----------------CchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCC
Q 010623          280 VDIPGQKVP---SI-----------------SNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPT  339 (506)
Q Consensus       280 ~~~~~~~~~---~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (506)
                      +..+....+   ..                 ..++..+.+.+.+.+.+++ +.+.+...   .....+++....+.+|..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~  298 (397)
T 2vou_A          223 WYWNVAEGPDLDELMTDVRGIRLPTSVHNNSLNPHNLRQFHSKGESLFKP-FRDLVLNA---SSPFVTVVADATVDRMVH  298 (397)
T ss_dssp             EEEECCTTHHHHHHTBCTTSCBCSSEECGGGCCHHHHHHHHHHHTTSCHH-HHHHHHHC---SSCEEEEEEEBCCSCSEE
T ss_pred             EEecCCCccchhhhccCCCCcccccccCcccCCHHHHHHHHHHHHhhChH-HHHHHhcc---CCcceeeeeeecCCceec
Confidence            655432100   00                 0122222222223334444 43333221   123355655556788999


Q ss_pred             CcEEEEccCCCCCCCCcchhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcC
Q 010623          340 PGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSA  417 (506)
Q Consensus       340 ~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~  417 (506)
                      |||+|+|||||.++|++|||+|+||+||..|++.|...      .+.+++|++|+++|++++..++..+..+.+++..
T Consensus       299 grv~LiGDAAH~~~P~~GqG~n~ai~DA~~La~~L~~~------~~~~~~L~~Ye~~R~~~~~~~~~~s~~~~~~~~~  370 (397)
T 2vou_A          299 GRVLLIGDAAVTPRPHAAAGGAKASDDARTLAEVFTKN------HDLRGSLQSWETRQLQQGHAYLNKVKKMASRLQH  370 (397)
T ss_dssp             TTEEECGGGTSBCCGGGSCHHHHHHHHHHHHHHHHHHC------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CcEEEEeccccccCCcchhhHHHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999752      2346899999999999999999999988888875

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=100.00  E-value=1.1e-36  Score=308.57  Aligned_cols=337  Identities=15%  Similarity=0.165  Sum_probs=220.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccc--ccc-chHHHHHHhCchhHHhhcccceecceEE
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGEL--LQP-GGYLKLIELGLEDCVEQIDAQRVFGYAL  134 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~--l~~-~~~~~l~~~g~~~~~~~~~~~~~~~~~~  134 (506)
                      ++++||+||||||+||++|+.|+++|++|+|+||.+....+..|..  +++ ++.+.|+++|+++.+....... .. .+
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~-~~-~~  101 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPM-GV-NI  101 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCC-CE-EE
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhccc-ce-EE
Confidence            4568999999999999999999999999999999876554444433  333 5689999999998887643222 22 33


Q ss_pred             EECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcC
Q 010623          135 FKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAP  213 (506)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~  213 (506)
                      +............... .......++|..|.+.|.+.+.+   +.++++ +|+++++++++   ++++..+|++  ++||
T Consensus       102 ~~~~g~~~~~~~~~~~-~~~~~~~i~r~~l~~~L~~~~~~---~~i~~~~~v~~i~~~~~~---v~v~~~~g~~--~~ad  172 (398)
T 2xdo_A          102 ADEKGNILSTKNVKPE-NRFDNPEINRNDLRAILLNSLEN---DTVIWDRKLVMLEPGKKK---WTLTFENKPS--ETAD  172 (398)
T ss_dssp             ECSSSEEEEECCCGGG-TTSSCCEECHHHHHHHHHHTSCT---TSEEESCCEEEEEECSSS---EEEEETTSCC--EEES
T ss_pred             ECCCCCchhhcccccc-CCCCCceECHHHHHHHHHhhcCC---CEEEECCEEEEEEECCCE---EEEEECCCcE--EecC
Confidence            3332222222200000 01122357899999999987753   345666 59999887764   4566778863  6799


Q ss_pred             eEEeecCCcccchhhccCCCCCCccceeeEEEe-----ccCC--CC-----CCeeEEEecCCCcEEEEecCCCeEEEEEE
Q 010623          214 LTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-----NCNL--PF-----ENHGHVVLADPSPILFYPISSNEVRCLVD  281 (506)
Q Consensus       214 ~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-----~~~~--~~-----~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  281 (506)
                      +||+|||.+|.+|++++...+    .+.+....     ....  +.     +....++++++..++.+|..++..++++.
T Consensus       173 ~vV~AdG~~S~vR~~l~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~  248 (398)
T 2xdo_A          173 LVILANGGMSKVRKFVTDTEV----EETGTFNIQADIHQPEINCPGFFQLCNGNRLMASHQGNLLFANPNNNGALHFGIS  248 (398)
T ss_dssp             EEEECSCTTCSCCTTTCCCCC----EEEEEEEEEEEESSHHHHSHHHHHHHTTSEEEEEETTEEEEEEEEETTEEEEEEE
T ss_pred             EEEECCCcchhHHhhccCCCc----eEcceEEEEEEeCchhccCchhHhhcCCceEEEecCCCeEEEEeCCCCcEEEEEE
Confidence            999999999999999864322    12222111     0000  10     11122345566667778998887777776


Q ss_pred             ecCC-CC------CCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccC-CCCCCC-C--cEEEEccCCC
Q 010623          282 IPGQ-KV------PSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMP-AAPYPT-P--GALLMGDAFN  350 (506)
Q Consensus       282 ~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~--rv~LvGDAAh  350 (506)
                      +... ..      ...+.++..+.+.+.+. .+.+.+.+.+..   ...+..++....+ ..+|.. +  ||+|+|||||
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~rv~LiGDAAh  324 (398)
T 2xdo_A          249 FKTPDEWKNQTQVDFQNRNSVVDFLLKEFS-DWDERYKELIHT---TLSFVGLATRIFPLEKPWKSKRPLPITMIGDAAH  324 (398)
T ss_dssp             EECCTTC---CCSCTTCHHHHHHHHHHHTT-TSCHHHHHHHHH---CSCCEEEEEEECCCCSCCCSCCSSCEEECTHHHH
T ss_pred             EecCcccccccccCcCCHHHHHHHHHHHHc-CCChHHHHHHhC---cccceeeeeEeccCCCCcccCCCccEEEEeehhc
Confidence            5422 11      11234455555655443 344555544433   1233333333322 246754 5  9999999999


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHhhhcCCCCChHH-HHHHHHHHHHHhcchhHHHHHHHHHHHH-HHcCC
Q 010623          351 MRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPA-LCNYLESFYTLRKPVASTINTLAGALYQ-VFSAS  418 (506)
Q Consensus       351 ~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~-~~~~L~~Y~~~R~~~~~~~~~~s~~~~~-~~~~~  418 (506)
                      .++|++|||+|+||+||.+|+++|....     .+ .+++|++|+++|++++..++..+..+.. ++...
T Consensus       325 ~~~P~~GqG~n~ai~Da~~La~~L~~~~-----~~~~~~~L~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~  389 (398)
T 2xdo_A          325 LMPPFAGQGVNSGLVDALILSDNLADGK-----FNSIEEAVKNYEQQMFIYGKEAQEESTQNEIEMFKPD  389 (398)
T ss_dssp             CCCCTTSCSHHHHHHHHHHHHHHHHSCC-----SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred             cCCCccCccHHHHHHHHHHHHHHHHhcc-----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999998641     12 5789999999999999999887776654 45443

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=100.00  E-value=2.7e-37  Score=311.13  Aligned_cols=322  Identities=19%  Similarity=0.155  Sum_probs=222.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .+||+||||||+|+++|+.|+++|++|+|+||.+......++..+++++.+.|+++|+++.+.... .....+.++..+.
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~-~~~~~~~~~~~g~   89 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGS-HTPPTYETWMHNK   89 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTC-BCCSCEEEEETTE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhC-CCccceEEEeCCc
Confidence            589999999999999999999999999999999877666778889999999999999998887643 3444555555522


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                       ....++..    ....+.++|..+.+.|.+.+.+. ++++++++ |++++. ++     .++..+|+  +++||+||+|
T Consensus        90 -~~~~~~~~----~~~~~~~~r~~l~~~L~~~~~~~-gv~i~~~~~v~~i~~-~~-----~v~~~~g~--~~~ad~vV~A  155 (379)
T 3alj_A           90 -SVSKETFN----GLPWRIMTRSHLHDALVNRARAL-GVDISVNSEAVAADP-VG-----RLTLQTGE--VLEADLIVGA  155 (379)
T ss_dssp             -EEEEECGG----GCCEEEEEHHHHHHHHHHHHHHT-TCEEESSCCEEEEET-TT-----EEEETTSC--EEECSEEEEC
T ss_pred             -eeeeccCC----CCceEEECHHHHHHHHHHHHHhc-CCEEEeCCEEEEEEe-CC-----EEEECCCC--EEEcCEEEEC
Confidence             22222211    11246789999999999999987 78998885 999987 33     23456776  4679999999


Q ss_pred             cCCcccchhhccCCCCCCccceeeEEEe-cc-----CCCCCC-eeEE--EecCCCcEEEEecCCCeEEEEEEecCCCCCC
Q 010623          219 DGCFSNLRRSLCNPKVDVPSCFVGLVLE-NC-----NLPFEN-HGHV--VLADPSPILFYPISSNEVRCLVDIPGQKVPS  289 (506)
Q Consensus       219 dG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~-----~~~~~~-~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  289 (506)
                      ||.+|.+|+.++.........+..+... ..     ....+. ....  +++++++++++|++++..+|++..+... +.
T Consensus       156 dG~~s~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~  234 (379)
T 3alj_A          156 DGVGSKVRDSIGFKQDRWVSKDGLIRLIVPRMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNENELYLGLMAPAAD-PR  234 (379)
T ss_dssp             CCTTCHHHHHHCCCEEEEEEEEEEEEEEEECCHHHHCSSCTTSEEEEECCSSSCCEEEEEECSSSEEEEEEEECTTC-TT
T ss_pred             CCccHHHHHHhcCCCCcCcCCcEEEEEEechhhccCCcCCcccccccceEECCCCEEEEEECCCCcEEEEEEecCCC-CC
Confidence            9999999999986321111111111111 11     112122 2222  5677789999999999888887765421 11


Q ss_pred             CCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCc-cCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHH
Q 010623          290 ISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRS-MPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIV  368 (506)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~  368 (506)
                        ++++.+.+..+.. .++ .+.+.+.. .+...+..++... ....+|..|||+|+|||||.++|++|||+|+||+||.
T Consensus       235 --~~~l~~~~~~~~~-~~~-~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~rv~lvGDAAh~~~P~~GqG~~~ai~da~  309 (379)
T 3alj_A          235 --GSSVPIDLEVWVE-MFP-FLEPCLIE-AAKLKTARYDKYETTKLDSWTRGKVALVGDAAHAMCPALAQGAGCAMVNAF  309 (379)
T ss_dssp             --TTCSSCCHHHHHH-HCG-GGHHHHHH-HHTCTTCCEEEEEEEEESCSEETTEEECTHHHHCCCGGGSCHHHHHHHHHH
T ss_pred             --HHHHHHHHhcCCc-hhc-cHHHHHhh-CCccceEEecccccCCCCCcccCcEEEEEcccCCCCcchhhhHHHHHHHHH
Confidence              1111112221100 011 01122211 1112333344333 2357888899999999999999999999999999999


Q ss_pred             HHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHH
Q 010623          369 ILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLA  408 (506)
Q Consensus       369 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s  408 (506)
                      +|+++|...      .+.+++|+.|+++|++++..++..+
T Consensus       310 ~La~~L~~~------~~~~~~l~~Y~~~r~~~~~~~~~~s  343 (379)
T 3alj_A          310 SLSQDLEEG------SSVEDALVAWETRIRPITDRCQALS  343 (379)
T ss_dssp             HHHHHTTSS------SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccc------cCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999853      1346899999999999999988776

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=100.00  E-value=2.1e-36  Score=316.00  Aligned_cols=352  Identities=18%  Similarity=0.179  Sum_probs=238.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHH-HHHHhCchhHHhhcccceecceEEEECC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYL-KLIELGLEDCVEQIDAQRVFGYALFKDG  138 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~-~l~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (506)
                      ++||+|||||++|+++|+.|+++|++|+|+||.+.+. ...|..+.++... .++.+|+++.+............+....
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~-~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~   85 (512)
T 3e1t_A            7 VFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPR-HQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWGK   85 (512)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSC-CCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCC-CCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEecC
Confidence            5899999999999999999999999999999986433 3345566676554 8899999988776543332222222221


Q ss_pred             ce--eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeE
Q 010623          139 NR--TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLT  215 (506)
Q Consensus       139 ~~--~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~v  215 (506)
                      ..  ....+..........++.+++..+.+.|.+.+.+. +++++.+ +|+++..+++++.+|++.+.+|+..+++||+|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~-Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~V  164 (512)
T 3e1t_A           86 EPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERK-GVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFI  164 (512)
T ss_dssp             CSSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHT-TCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhC-CCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEE
Confidence            11  11222222222334567899999999999999886 7888888 59999999998888998888897667899999


Q ss_pred             EeecCCcccchhhccCCCCCCccceeeEEE--e-ccCCCC--CCeeEEEecCCCcEEEEecCCCeEEEEEEecCCCCCCC
Q 010623          216 IVCDGCFSNLRRSLCNPKVDVPSCFVGLVL--E-NCNLPF--ENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSI  290 (506)
Q Consensus       216 V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~--~-~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  290 (506)
                      |+|||.+|.+|++++...........++..  . ....+.  .......+.++++++++|++++...+.+.++.+.....
T Consensus       165 I~AdG~~S~vr~~lg~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Pl~~~~~~vg~~~~~~~~~~~  244 (512)
T 3e1t_A          165 VDASGNRTRVSQAVGERVYSRFFQNVALYGYFENGKRLPAPRQGNILSAAFQDGWFWYIPLSDTLTSVGAVVSREAAEAI  244 (512)
T ss_dssp             EECCCTTCSSGGGTCCEEECSTTCEEEEEEEEESCCCCSTTCTTSEEEEEETTEEEEEEECSSSEEEEEEEEEHHHHTTT
T ss_pred             EECCCcchHHHHHcCCCccCchhcceEEEEEecCCccCCCCCcCceEEEEeCCceEEEEEeCCCeEEEEEEecHHHhhhh
Confidence            999999999999996533222222222221  1 112222  22334455677899999999988777776653321111


Q ss_pred             CchHHHHHHHHhcCCCCChhhhHHHHhhhc-----CCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHH
Q 010623          291 SNGEMANYLKTVVAPQIPREIFHSFVAAVD-----GGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALS  365 (506)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~  365 (506)
                      .. ...+.+.+.+.  ..+.+.+.+.....     ...+...+.......+|..+||+|+|||||.++|++|||+|+|++
T Consensus       245 ~~-~~~~~~~~~l~--~~p~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~vvlvGDAAh~~~P~~GqG~~~Al~  321 (512)
T 3e1t_A          245 KD-GHEAALLRYID--RCPIIKEYLAPATRVTTGDYGEIRIRKDYSYCNTSFWKNGMALVGDAACFVDPVFSSGVHLATY  321 (512)
T ss_dssp             SS-CHHHHHHHHHH--TSHHHHHHHTTCEECCSSTTSSCEEEESCCEEESCSBCSSEEECGGGTEECCSTTCCHHHHHHH
T ss_pred             cC-CHHHHHHHHHH--hCchHHHHHhcCccccccccccceeeccccccccccccCCEEEEechhhcCCCccccCHHHHHH
Confidence            11 11222222211  11223322222111     112222222222456788899999999999999999999999999


Q ss_pred             HHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCC
Q 010623          366 DIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSAS  418 (506)
Q Consensus       366 Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~  418 (506)
                      ||..|++.|.....  .+.+.+.+|+.|+++|+++...+..+...++.+....
T Consensus       322 dA~~La~~L~~~l~--~~~~~~~aL~~Ye~~~~~~~~~~~~~~~~~y~~~~r~  372 (512)
T 3e1t_A          322 SALLVARAINTCLA--GEMSEQRCFEEFERRYRREYGNFYQFLVAFYDMNQDT  372 (512)
T ss_dssp             HHHHHHHHHHHHTT--TCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT
T ss_pred             HHHHHHHHHHHHHc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence            99999999987643  2234568999999999999999988888777775443

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=100.00  E-value=9.2e-37  Score=321.44  Aligned_cols=366  Identities=16%  Similarity=0.170  Sum_probs=240.3

Q ss_pred             ccCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecc
Q 010623           52 ALNGECPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFG  131 (506)
Q Consensus        52 ~~~~~~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~  131 (506)
                      .++..+++++||+||||||+|+++|+.|+++|++|+|+|+.+.+. ...|..+.+.+.+.++.+|+++.+.........+
T Consensus        15 ~~~~~~M~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~-~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~   93 (591)
T 3i3l_A           15 VPRGSHMTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPR-YRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPS   93 (591)
T ss_dssp             -----CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSC-CCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECE
T ss_pred             CCCcCcCCCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCC-CceeeeECHHHHHHHHHcCCcHHHHhcCCcccCC
Confidence            334444557999999999999999999999999999999986543 3457789999999999999998877654333333


Q ss_pred             eEEEECCce--eeeecCCcCC--CCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCcc
Q 010623          132 YALFKDGNR--TQISYPLEKF--HSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGE  206 (506)
Q Consensus       132 ~~~~~~~~~--~~~~~~~~~~--~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~  206 (506)
                      ..+......  ....+.....  ...+.++.+++..+...|.+.+.+. |++++.+ +|+++..+++.+.+|++.+ +|+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~-Gv~i~~g~~V~~v~~~~g~~~~V~~~~-~G~  171 (591)
T 3i3l_A           94 ATFLWGQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSR-GITVHEETPVTDVDLSDPDRVVLTVRR-GGE  171 (591)
T ss_dssp             EEEECSSSCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHT-TCEEETTCCEEEEECCSTTCEEEEEEE-TTE
T ss_pred             cEEEecCCCccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCCEEEEEEec-CCc
Confidence            332222111  1112211111  0223456789999999999999886 7889888 5999987755555566543 675


Q ss_pred             EEEEEcCeEEeecCCcccchhhccCCCCCCccceeeEEE--ec-cCC--CCCCeeEEEecCCCcEEEEecCCCeEEEEEE
Q 010623          207 ELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVL--EN-CNL--PFENHGHVVLADPSPILFYPISSNEVRCLVD  281 (506)
Q Consensus       207 ~~~i~a~~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~--~~-~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  281 (506)
                      ..+++||+||+|||.+|.+|+.++...........++..  .. ...  +........+.+.+++|.+|++++..++.+.
T Consensus       172 ~~~i~AdlVV~AdG~~S~lr~~lg~~~~~~~~~~~av~~~~~~~~~~~~~~~~~~~~~~~~~G~~w~iPl~~~~~sv~~~  251 (591)
T 3i3l_A          172 SVTVESDFVIDAGGSGGPISRKLGVRQYDEFYRNFAVWSYFKLKDPFEGDLKGTTYSITFEDGWVWMIPIKDDLYSVGLV  251 (591)
T ss_dssp             EEEEEESEEEECCGGGCHHHHHHTCEEEEEEEEEEEEEEEEECCCSCCSTTTTCEEEEEETTEEEEEEECSSSEEEEEEE
T ss_pred             eEEEEcCEEEECCCCcchhHHHcCCCCCCccccceEEEEEEecCccccCCCCCceEEEEcCCcEEEEEECCCCeEEEEEE
Confidence            567899999999999999999998753322111122211  11 112  2223445556678899999999987777776


Q ss_pred             ecCCCCCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhH
Q 010623          282 IPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMT  361 (506)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n  361 (506)
                      .+.+..+........+++.+... .. +.+.+.+...........++.......+|..+|++++|||||.++|+.|||+|
T Consensus       252 ~~~~~~~~l~~~~~~~~~~~l~~-~~-p~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLIGDAAh~~~Pl~GqGin  329 (591)
T 3i3l_A          252 VDRSKSAEVREQGADAFYSSTLA-KC-AKAMDILGGAEQVDEVRIVQDWSYDTEVFSADRFFLCGDAACFTDPLFSQGVH  329 (591)
T ss_dssp             EEGGGHHHHHHHCHHHHHHHHHT-TC-HHHHHHHTTCEECSCCEEEEEEEEEESCSEETTEEECGGGTCBCCGGGCCHHH
T ss_pred             cCHHHHhhhccCCHHHHHHHHHH-hC-HHHHHHHhcCccccCceEecccccchhhcccCCEEEEccccccCCCcccccHH
Confidence            65432111111112233333221 12 23333332222122222233233345678889999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHH--HHHcCCCchhHH
Q 010623          362 VALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALY--QVFSASPDEARK  424 (506)
Q Consensus       362 ~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~--~~~~~~~~~~~~  424 (506)
                      +|++||..|++.|.....  ++...+.+++.|+++|++....+..+....+  ........+.+.
T Consensus       330 lAl~dA~~LA~~L~~~l~--~~~~~~~al~~Y~~~~~~~~~~i~~~~~~~Y~~~~~~r~ds~FW~  392 (591)
T 3i3l_A          330 LASQSAVSAAAAIDRITR--HGDEKDAVHAWYNRTYREAYEQYHQFLASFYTFASFTEPDSEFWR  392 (591)
T ss_dssp             HHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChHHHH
Confidence            999999999999986532  2344567999999999999999998888877  444443344443

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=100.00  E-value=4.1e-36  Score=303.81  Aligned_cols=338  Identities=20%  Similarity=0.199  Sum_probs=218.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC-cccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD-RIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG  138 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~-~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (506)
                      +|||+||||||+||++|+.|+++|++|+|+||++.... ..+|..+.++   .++++++....... .....+..++...
T Consensus         4 ~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~---~l~~l~~~~~~~~~-~~~~~~~~~~~~~   79 (397)
T 3oz2_A            4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKG---ILNEADIKADRSFI-ANEVKGARIYGPS   79 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETH---HHHHTTCCCCTTTE-EEEESEEEEECTT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHH---HHHHcCCCchhhhh-hcccceEEEEeCC
Confidence            59999999999999999999999999999999876543 3456667654   56677776433222 2234455555443


Q ss_pred             ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEe
Q 010623          139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV  217 (506)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~  217 (506)
                      .......... ......++.++|..+.+.|.+.+.+. |++++.++ |+++..+++++.++.... +|+..+++||+||+
T Consensus        80 ~~~~~~~~~~-~~~~~~~~~i~R~~~~~~L~~~a~~~-G~~~~~~~~v~~~~~~~~~~~~v~~~~-~~~~~~~~a~~vIg  156 (397)
T 3oz2_A           80 EKRPIILQSE-KAGNEVGYVLERDKFDKHLAALAAKA-GADVWVKSPALGVIKENGKVAGAKIRH-NNEIVDVRAKMVIA  156 (397)
T ss_dssp             CSSCEEEECS-SSSCCCEEEECHHHHHHHHHHHHHHH-TCEEESSCCEEEEEEETTEEEEEEEEE-TTEEEEEEEEEEEE
T ss_pred             CceEeecccc-ccCCceeEEEEHHHHHHHHHHHHHhc-CcEEeeeeeeeeeeeccceeeeeeecc-cccceEEEEeEEEe
Confidence            3222222211 12234567899999999999999987 77888775 999999999887666543 55556789999999


Q ss_pred             ecCCcccchhhccCCCCCCccceeeE--EEeccC-CCCCCeeEEEec---CCCcEEEEecCCCeEEEEEEecCCCCCCCC
Q 010623          218 CDGCFSNLRRSLCNPKVDVPSCFVGL--VLENCN-LPFENHGHVVLA---DPSPILFYPISSNEVRCLVDIPGQKVPSIS  291 (506)
Q Consensus       218 AdG~~S~vR~~l~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  291 (506)
                      |||.+|.+|++++.............  ...... ...++...++++   ++++.|++|..++..++.+....+...  .
T Consensus       157 AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~vg~~~~~~~~~--~  234 (397)
T 3oz2_A          157 ADGFESEFGRWAGLKSVILARNDIISALQYRMINVDVDPDYTDFYLGSIAPAGYIWVFPKGEGMANVGIGSSINWIH--N  234 (397)
T ss_dssp             CCCTTCHHHHHHTCGGGCCCGGGEEEEEEEEEESCCCCTTEEEEECSTTSTTEEEEEEEEETTEEEEEEEEETTTSC--S
T ss_pred             CCccccHHHHHcCCCcccccceeeeeeEEEEeeccccCcccceeeeeccCCCceEEEeecccceeEEEEeeccchhh--h
Confidence            99999999999987543332222111  111111 122344455544   456789999999877776655433221  2


Q ss_pred             chHHHHHHHHhcCCCCChhhhHHHHhhhcCCCe-EEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHH
Q 010623          292 NGEMANYLKTVVAPQIPREIFHSFVAAVDGGNI-KTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVIL  370 (506)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~L  370 (506)
                      ..+..+.+.+++.. . +.+.    ........ ...+. .....++..+|++|+|||||.++|++|||+|+||+||..|
T Consensus       235 ~~~~~~~l~~~~~~-~-~~l~----~~~~~~~~~~~~~~-~~~~~~~~~~~v~lvGDAA~~~~P~~G~Gi~~A~~~g~~~  307 (397)
T 3oz2_A          235 RFELKNYLDRFIEN-H-PGLK----KGQDIQLVTGGVSV-SKVKMPITMPGLMLVGDAARLIDPITGGGIANAIVSGMYA  307 (397)
T ss_dssp             HHHHHHHHHHHHHT-C-HHHH----TSEEEEEEEEEEEC-CCCCSCCEETTEEECGGGGTCSCTTTCCCHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHh-C-cccc----ccceeeeeeccccc-cCcccceeeeeEEEcccccccCCCCcchhHHHHHHHHHHH
Confidence            33444444443221 1 1111    11000011 11122 2234567789999999999999999999999999999999


Q ss_pred             HHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Q 010623          371 RNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVF  415 (506)
Q Consensus       371 a~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~  415 (506)
                      |+.|.+....+  +..++.|+.|++.++++............+.+
T Consensus       308 A~~i~~~l~~~--~~~~~~L~~Ye~~~~~~~~~~~~~~~~~~~~~  350 (397)
T 3oz2_A          308 AQVTKEAIESN--DYSPQMMQKYEKLIKERFERKHLRNWVAKEKL  350 (397)
T ss_dssp             HHHHHHHHHHT--CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998653211  22357899999998887655443333333333

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=100.00  E-value=1.8e-36  Score=312.12  Aligned_cols=341  Identities=17%  Similarity=0.208  Sum_probs=226.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC--CcccccccccchHHHHHHhCchhHHhhcccceecceEEEE
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP--DRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFK  136 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~--~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  136 (506)
                      +++||+||||||+|+++|+.|+++|++|+|+||.+.+.  ...++..+   +.+.++++|+.+...........+..++.
T Consensus         5 ~~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l---~~~~l~~lg~~~~~~~~~~~~~~~~~~~~   81 (453)
T 3atr_A            5 LKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAV---SKAHFDKLGMPYPKGEELENKINGIKLYS   81 (453)
T ss_dssp             EECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEE---EHHHHHHTTCCCCCGGGEEEEEEEEEEEC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccc---cHHHHHHhcCCCCchHHHHhhhcceEEEC
Confidence            35899999999999999999999999999999986532  23344434   56788899887533221112233334443


Q ss_pred             CCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeC-CccEEEEEcCe
Q 010623          137 DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTK-AGEELTAYAPL  214 (506)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~-~G~~~~i~a~~  214 (506)
                      ........+       ...++.++|..+.+.|.+.+.+. +++++.++ |+++..+++++.+|++.+. +|+..+++||+
T Consensus        82 ~~~~~~~~~-------~~~~~~i~r~~l~~~L~~~a~~~-gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~  153 (453)
T 3atr_A           82 PDMQTVWTV-------NGEGFELNAPLYNQRVLKEAQDR-GVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKV  153 (453)
T ss_dssp             TTSSCEEEE-------EEEEEEECHHHHHHHHHHHHHHT-TCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSE
T ss_pred             CCCceEEeE-------CCCcEEEcHHHHHHHHHHHHHHc-CCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCE
Confidence            222111111       12356789999999999999886 78898885 9999998888877887765 78766789999


Q ss_pred             EEeecCCcccchhhccCCCCC----Cc-cceeeE---EEeccCCCCCCeeEEEec----CCCcEEEEecCCCeEEEEEEe
Q 010623          215 TIVCDGCFSNLRRSLCNPKVD----VP-SCFVGL---VLENCNLPFENHGHVVLA----DPSPILFYPISSNEVRCLVDI  282 (506)
Q Consensus       215 vV~AdG~~S~vR~~l~~~~~~----~~-~~~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~  282 (506)
                      ||+|||.+|.+|+.++...+.    .. ....++   +........+....++++    +++++|++|.+++..++.+..
T Consensus       154 VV~AdG~~s~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~vg~~~  233 (453)
T 3atr_A          154 VVEATGYSRSFRSKLPPELPITEDLDDKDADVAYREVLLTKEDIEDHDYLRIFIDQETSPGGYWWYFPKGKNKVNVGLGI  233 (453)
T ss_dssp             EEECCGGGCTTGGGSCTTSGGGCCCCGGGEEEEEEEEEEESSCCTTTTEEEEECCTTTSTTSCEEEEEEETTEEEEEEEE
T ss_pred             EEECcCCchhhHHhcCCCCCcccCCCcccceeeeEEEEecCCCccCCCeEEEEECCCCCCCcEEEEEECCCCeEEEEEEe
Confidence            999999999999999865421    11 111222   111112222334445553    567899999999887777766


Q ss_pred             cCCCCCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHH
Q 010623          283 PGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTV  362 (506)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~  362 (506)
                      +....+....+.+.+++.+. .+.+...      ..... .-...+. .....+|..+|++|+|||||.++|++|||+|+
T Consensus       234 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~------~~~~~-~~~~~p~-~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~~~  304 (453)
T 3atr_A          234 QGGMGYPSIHEYYKKYLDKY-APDVDKS------KLLVK-GGALVPT-RRPLYTMAWNGIIVIGDSGFTVNPVHGGGKGS  304 (453)
T ss_dssp             ESSSCCCCHHHHHHHHHHHH-CTTEEEE------EEEEE-EEEEEEC-SSCCSCSEETTEEECGGGGTCSCTTTCCCHHH
T ss_pred             cCCCCCCCHHHHHHHHHHhh-hhhcCCC------eEEec-cceeccC-CCCCCceecCCEEEEeCcccCCCCCccccHHH
Confidence            53321111223333444331 2222110      00000 0011232 34567788899999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCch
Q 010623          363 ALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDE  421 (506)
Q Consensus       363 ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~  421 (506)
                      ||+||..|++.|......++  ..+++|+.|+++|++++...+..+..+.+++..-.++
T Consensus       305 Ai~da~~la~~l~~~l~~~~--~~~~~L~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~  361 (453)
T 3atr_A          305 AMISGYCAAKAILSAFETGD--FSASGLWDMNICYVNEYGAKQASLDIFRRFLQKLSND  361 (453)
T ss_dssp             HHHHHHHHHHHHHHHHHHTC--CSTTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHHHHHHHHHcCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence            99999999999986421111  1246899999999999999988888777776543244

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=100.00  E-value=2.3e-34  Score=293.89  Aligned_cols=335  Identities=19%  Similarity=0.150  Sum_probs=230.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      ++||+|||||++|+++|+.|+++|++|+|+||.+.+. ...|..+.+++.+.++++|+++.+.........+..+...+.
T Consensus         5 ~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~-~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   83 (421)
T 3nix_A            5 KVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPR-FVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFVRGKE   83 (421)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSC-CCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEEETTE
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCC-CcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEEeCCe
Confidence            4899999999999999999999999999999986443 356788999999999999999888776554445555544444


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                      .....+...........+.++|..+.+.|.+.+.+. |++++.+ +|+++..+++++. +.+.+.+|+..+++||+||+|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~-gv~i~~~~~v~~i~~~~~~~~-v~v~~~~g~~~~~~a~~vV~A  161 (421)
T 3nix_A           84 IADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQ-GVDVEYEVGVTDIKFFGTDSV-TTIEDINGNKREIEARFIIDA  161 (421)
T ss_dssp             EEEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHH-TCEEECSEEEEEEEEETTEEE-EEEEETTSCEEEEEEEEEEEC
T ss_pred             eEEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhC-CCEEEcCCEEEEEEEeCCEEE-EEEEcCCCCEEEEEcCEEEEC
Confidence            434444322222234567899999999999999887 7888888 4999998877654 677788898777899999999


Q ss_pred             cCCcccchhhccCCCCCCccceeeEEEe-ccCCCC----CCeeEEEec---CCCcEEEEecCCCeEEEEEEecCCCCCCC
Q 010623          219 DGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPF----ENHGHVVLA---DPSPILFYPISSNEVRCLVDIPGQKVPSI  290 (506)
Q Consensus       219 dG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  290 (506)
                      ||.+|.+|+.++.+.+........+... ....+.    .+...+++.   +.++.|++|.+++...+.+..+.+.....
T Consensus       162 ~G~~s~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~vg~~~~~~~~~~~  241 (421)
T 3nix_A          162 SGYGRVIPRMFGLDKPSGFESRRTLFTHIKDVKRPVAAEMEGNRITAVVHKPKVWIWVIPFSNGNTSVGFVGEPSYFDEY  241 (421)
T ss_dssp             CGGGCHHHHHTTCEECCSSCCCEEEEEEEECTTCCC----CCSEEEEEEEETTEEEEEEECTTSEEEEEEEECHHHHTTS
T ss_pred             CCCchhhHHhcCCCCCCcCCCcEEEEEEECCCcCCCccCCCCeEEEEEeCCCCEEEEEEEECCCCEEEEEEecHHHhhhc
Confidence            9999999999987544332222222211 111111    122223322   56688999999998777776653321111


Q ss_pred             CchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHH
Q 010623          291 SNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVIL  370 (506)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~L  370 (506)
                       .....+.+.+... .. +.+.+.+........+..++.......++..+|++++|||||.++|++|||+|+|++||..|
T Consensus       242 -~~~~~~~l~~~~~-~~-p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAa~~~~P~~G~G~~~A~~~a~~l  318 (421)
T 3nix_A          242 -TGTPEERMRAMIA-NE-GHIAERFKSEEFLFEPRTIEGYAISASKLYGDGFVLTGNATEFLDPIFSSGATFAMESGSKG  318 (421)
T ss_dssp             -CSCHHHHHHHHHH-TC-TTTHHHHTTCCBSSCCEEEECCCBEESCSEETTEEECGGGTCBCCSTTCCHHHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHH-hC-cHHHHHHhcCccccCceeecccceeeeeeccCCEEEecccccccCCcccccHHHHHHHHHHH
Confidence             1122233333221 11 12232222222222445555555556778889999999999999999999999999999999


Q ss_pred             HHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHH
Q 010623          371 RNLLRHLSNLNDAPALCNYLESFYTLRKPVASTI  404 (506)
Q Consensus       371 a~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~  404 (506)
                      ++.|.+.......    +.++.|+++++......
T Consensus       319 a~~l~~~~~~~~~----~~~~~y~~~~~~~~~~~  348 (421)
T 3nix_A          319 GKLAVQFLKGEEV----NWEKDFVEHMMQGIDTF  348 (421)
T ss_dssp             HHHHHHHHTTCCC----CHHHHTHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCch----hHHHHHHHHHHHHHHHH
Confidence            9999875432221    36777888887655444

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=100.00  E-value=4.6e-32  Score=284.15  Aligned_cols=333  Identities=16%  Similarity=0.130  Sum_probs=217.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH------------CCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhH--Hhhcc
Q 010623           60 DADVIVVGAGVAGAALANTLAK------------DGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDC--VEQID  125 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~------------~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~--~~~~~  125 (506)
                      .+||+||||||+|+++|+.|++            .|++|+|+|+.+.+. ...|+.+.+++.+.|+++|+.+.  +....
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~~~-~g~g~~~~p~~~~~l~~lGi~e~~~~~~~~   85 (526)
T 2pyx_A            7 ITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVAT-IGVGEGTWPSMRSTLSKIGIDENDFIRQCD   85 (526)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSCCC-CCSCEECCTHHHHHHHHHTCCHHHHHHHTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCCCC-cceeeechHhHHHHHHHcCCCHHHHHHHcC
Confidence            5799999999999999999999            999999999975443 33478899999999999999986  55433


Q ss_pred             cceecceEEEE--C------CceeeeecC---------C-----------------------------------cCC-CC
Q 010623          126 AQRVFGYALFK--D------GNRTQISYP---------L-----------------------------------EKF-HS  152 (506)
Q Consensus       126 ~~~~~~~~~~~--~------~~~~~~~~~---------~-----------------------------------~~~-~~  152 (506)
                      .....++.+..  .      +......+.         +                                   ..+ ..
T Consensus        86 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~v~~q~~~~~~~~~~~~~~~~~~~~~  165 (526)
T 2pyx_A           86 ASFKQGSRFINWCKDPQSNVADSYLHPFSLPHGHQELDLCPYWLPHAEQVSFAEAVCSQQVLTQLGLAPKSIVTAQYHFQ  165 (526)
T ss_dssp             CEEECEEEEESCSSCCBTTBCCEEEEESSCCTTTTTCCCHHHHGGGTTTSCHHHHHCSHHHHHHTTBCSSCTTSCTTCCS
T ss_pred             CEEECCCcccCCCccccCCCCCceecCCCCCCCCCCCChhHHHHhhhhccCchhhcccccchhhhccchhhhhccccCCC
Confidence            32222322211  1      000000000         0                                   000 11


Q ss_pred             CcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccc-hhhccC
Q 010623          153 DVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNL-RRSLCN  231 (506)
Q Consensus       153 ~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~v-R~~l~~  231 (506)
                      ...++.+++..+.+.|.+.+.+..|++++.++|+++..++++.. +.+...+|++  ++||+||+|||.+|.+ |+.++.
T Consensus       166 ~~~~~~~~r~~l~~~L~~~a~~~~Gv~i~~~~v~~i~~~~~g~~-~~v~~~~g~~--i~ad~vV~AdG~~S~~~~~~lg~  242 (526)
T 2pyx_A          166 NNYGYHLNAAKFSQLLTEHCTQKLGVTHIRDHVSQIINNQHGDI-EKLITKQNGE--ISGQLFIDCTGAKSLLLGEHLQV  242 (526)
T ss_dssp             SCCEEEECHHHHHHHHHHHHHHTSCCEEEECCEEEEEECTTSCE-EEEEESSSCE--EECSEEEECSGGGCCCCCCCTCC
T ss_pred             CCeeEEEcHHHHHHHHHHHHHhcCCCEEEEeEEEEEEecCCCcE-EEEEECCCCE--EEcCEEEECCCcchHHHHHHhCC
Confidence            22346789999999999999982378888889999987654321 3344567663  7799999999999999 677776


Q ss_pred             CCCCCc---cceeeEEEe-ccC---CCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCCCCCCCchHHHHHHHHhcC
Q 010623          232 PKVDVP---SCFVGLVLE-NCN---LPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMANYLKTVVA  304 (506)
Q Consensus       232 ~~~~~~---~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (506)
                      +.....   ....++... ...   .+..........+.++++.+|+.++. .+.+.+....   .+.++..+.+++.+.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~pl~~~~-~~~~v~~~~~---~~~~~~~~~l~~~l~  318 (526)
T 2pyx_A          243 PFLSQKSVLFNDRALAIQVPYSDANSPIASCTHSTAQPNGWIWDIGLPTRK-GVGYVYSSSH---TNDIDAQKTLFNYLG  318 (526)
T ss_dssp             CEEECHHHHCCCEEEEEEEECSSTTCCCCSSEEEEEETTEEEEEEECSSEE-EEEEEECTTT---CCHHHHHHHHHHHHT
T ss_pred             CcccccccccCccEEEEEeeccCCCCCCCCceeEEecCCCeEEEeeCCCce-EEEEEecCCC---CChHHHHHHHHHHHH
Confidence            442211   111222221 111   11122223334567788999998753 3333332221   233455555655543


Q ss_pred             CCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHHHHhhhcCCCCChH
Q 010623          305 PQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAP  384 (506)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~  384 (506)
                      .. .+.+    . .   .....++.......+|..+||+|+|||||.++|+.|||+|+|++||..|++.|..     ...
T Consensus       319 ~~-~~~l----~-~---~~~~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~GqGi~~ai~da~~La~~L~~-----~~~  384 (526)
T 2pyx_A          319 VD-GAAA----D-K---LEPRQLAINPGYRAKCWQNNCIAIGMAAGFIEPLEASALALIEWTASTLAQQLPP-----NRM  384 (526)
T ss_dssp             CC-HHHH----H-H---CCCEEEECCCEEESCSEETTEEECGGGTEECCCTTCHHHHHHHHHHHHHHHTCCS-----CHH
T ss_pred             hc-Cccc----c-c---CCceEEecccCccccccCCCEEEEEhhhcccCccccccHHHHHHHHHHHHHHhhh-----cCC
Confidence            22 1111    1 1   1223444444445677889999999999999999999999999999999998863     234


Q ss_pred             HHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 010623          385 ALCNYLESFYTLRKPVASTINTLAGALYQV  414 (506)
Q Consensus       385 ~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~  414 (506)
                      ..+.+++.|+++|+++...+.......+..
T Consensus       385 ~~~~~l~~Y~~~~~~~~~~~~~~~~~~y~~  414 (526)
T 2pyx_A          385 VMDTISARVNERYQQHWQQIIDFLKLHYVI  414 (526)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            567899999999999998887766655544

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=100.00  E-value=1.4e-33  Score=283.96  Aligned_cols=316  Identities=16%  Similarity=0.133  Sum_probs=200.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCCCCcccccccccchHHHHHHhCch-hH-HhhcccceecceEEEE
Q 010623           61 ADVIVVGAGVAGAALANTLAKD--GRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLE-DC-VEQIDAQRVFGYALFK  136 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~-~~-~~~~~~~~~~~~~~~~  136 (506)
                      .||+||||||+||++|+.|+++  |++|+|+||.+.....+.+..+++++++.+...++. +. +... ........++.
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   79 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLN-PQFLEDFKLVH   79 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGC-CEEECCEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHh-hccccceEEEe
Confidence            3899999999999999999999  999999999977665566777777776622222333 32 2221 12233444444


Q ss_pred             CCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeE
Q 010623          137 DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLT  215 (506)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~v  215 (506)
                      .+....  .   ..  ......++|..+.+.|.+.+.+. ++++++++ |+++++.             .   +++||+|
T Consensus        80 ~g~~~~--~---~~--~~~~~~~~r~~l~~~L~~~~~~~-gv~i~~~~~v~~i~~~-------------~---~~~ad~v  135 (381)
T 3c4a_A           80 HNEPSL--M---ST--GVLLCGVERRGLVHALRDKCRSQ-GIAIRFESPLLEHGEL-------------P---LADYDLV  135 (381)
T ss_dssp             SSSEEE--C---CC--CSCEEEEEHHHHHHHHHHHHHHT-TCEEETTCCCCSGGGC-------------C---GGGCSEE
T ss_pred             CCeeEE--e---cC--CCceeeecHHHHHHHHHHHHHHC-CCEEEeCCEeccchhc-------------c---cccCCEE
Confidence            433221  1   00  12235789999999999999987 78888875 7776431             0   1359999


Q ss_pred             EeecCCcccchhhccCCC-CCCc--cceeeEEEeccCCCCCCeeE-EEecCCCcEE--EEecCCCeEEEEEEecC-----
Q 010623          216 IVCDGCFSNLRRSLCNPK-VDVP--SCFVGLVLENCNLPFENHGH-VVLADPSPIL--FYPISSNEVRCLVDIPG-----  284 (506)
Q Consensus       216 V~AdG~~S~vR~~l~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~p~~~~~~~~~~~~~~-----  284 (506)
                      |+|||.+|. |+.+.... ....  .....+...  ....+.... +...+.++++  ++|++++...+.+..+.     
T Consensus       136 V~AdG~~S~-R~~l~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~  212 (381)
T 3c4a_A          136 VLANGVNHK-TAHFTEALVPQVDYGRNKYIWYGT--SQLFDQMNLVFRTHGKDIFIAHAYKYSDTMSTFIVECSEETYAR  212 (381)
T ss_dssp             EECCGGGGG-TCCSSGGGCCCCEEEEEEEEEEEE--SSCCSSEEEEEEEETTEEEEEEEEECSSSCEEEEEEECHHHHHH
T ss_pred             EECCCCCch-HHhhhhhcCCCcccCCccEEEEec--CCCCCcceeeEeeCCCcEEEEEEEEecCCeEEEEEECCcccccc
Confidence            999999999 99873211 1111  111122111  111112111 1123445443  68998887554444322     


Q ss_pred             CCCCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCC-ccCCCCCCCCcEEEEccCCCCCCCCcchhhHHH
Q 010623          285 QKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNR-SMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVA  363 (506)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~a  363 (506)
                      ...+..+.++..+.+.+.+....+. .     ..+.... ..|+.. .....+|..|||+|+|||||.++|++|||+|+|
T Consensus       213 ~~~~~~~~~~~~~~l~~~~~~~~~~-~-----~l~~~~~-~~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~GqG~~~a  285 (381)
T 3c4a_A          213 ARLGEMSEEASAEYVAKVFQAELGG-H-----GLVSQPG-LGWRNFMTLSHDRCHDGKLVLLGDALQSGHFSIGHGTTMA  285 (381)
T ss_dssp             TTSSSSCHHHHHHHHHHHTHHHHTT-C-----CCBCCTT-TCSEEEEECCCSCSEETTEEECGGGTCCCCGGGCCHHHHH
T ss_pred             CCcccCChHHHHHHHHHHhcccCCC-c-----hhhcCCC-cceeeeccccCCCcccCCEEEEEccccccCCCccccHHHH
Confidence            1222334445455554433211100 0     0011111 123222 234678999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcC
Q 010623          364 LSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSA  417 (506)
Q Consensus       364 i~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~  417 (506)
                      |+||.+|+++|...      .+.+++|+.|+++|++++..++..++.+.+.+..
T Consensus       286 l~Da~~La~~L~~~------~~~~~aL~~Y~~~r~~~~~~~~~~s~~~~~~~~~  333 (381)
T 3c4a_A          286 VVVAQLLVKALCTE------DGVPAALKRFEERALPLVQLFRGHADNSRVWFET  333 (381)
T ss_dssp             HHHHHHHHHHHHHS------SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcc------ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence            99999999999863      1357899999999999999999999888766544

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=100.00  E-value=2.6e-31  Score=280.80  Aligned_cols=348  Identities=17%  Similarity=0.141  Sum_probs=208.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCCc-ccccccccchHHHHHHhCchhHHhhccccee-
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKD------GRRVHVIERDLSEPDR-IVGELLQPGGYLKLIELGLEDCVEQIDAQRV-  129 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~------G~~v~vvE~~~~~~~~-~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~-  129 (506)
                      .+++||+||||||+||++|+.|+++      |++|+|+||.+..... ..|..+.+++++.|  ++-+........... 
T Consensus        33 ~~~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~l--l~~~~~~g~~~~~~~~  110 (584)
T 2gmh_A           33 AEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEEL--FPDWKEKGAPLNTPVT  110 (584)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHH--CTTHHHHTCCCCEECC
T ss_pred             ccCCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHH--HHHHHhcCCceeeeec
Confidence            3569999999999999999999999      9999999998765443 34566777776655  222211000000001 


Q ss_pred             -cceEEEECCceeeeecCC-cC-CCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeC-CeEEEEEEEe--
Q 010623          130 -FGYALFKDGNRTQISYPL-EK-FHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEK-GTIKGVQYKT--  202 (506)
Q Consensus       130 -~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~-~~v~~v~v~~--  202 (506)
                       ..+.+......  ..++. .. .......+.+++..+.+.|.+.+++. +++++.++ |+++..++ +.+.+|+..+  
T Consensus       111 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~-Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g  187 (584)
T 2gmh_A          111 EDRFGILTEKYR--IPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEAL-GVEVYPGYAAAEILFHEDGSVKGIATNDVG  187 (584)
T ss_dssp             EEEEEEECSSCE--EECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHT-TCEEETTCCEEEEEECTTSSEEEEEECCEE
T ss_pred             hhheeeeccCCC--ccccccCccccccCCCEEEeHHHHHHHHHHHHHHc-CCEEEcCCEEEEEEEcCCCCEEEEEeCCcc
Confidence             11222222111  22221 11 01122356789999999999999988 78999885 99998775 4566676542  


Q ss_pred             --CCccE-------EEEEcCeEEeecCCcccchhhc----cCCCCCCccc-eeeEE-Eec--cCCCCCCeeEEEec----
Q 010623          203 --KAGEE-------LTAYAPLTIVCDGCFSNLRRSL----CNPKVDVPSC-FVGLV-LEN--CNLPFENHGHVVLA----  261 (506)
Q Consensus       203 --~~G~~-------~~i~a~~vV~AdG~~S~vR~~l----~~~~~~~~~~-~~~~~-~~~--~~~~~~~~~~~~~~----  261 (506)
                        .+|+.       .+++||+||+|||.+|.+|+++    +......+.. ..++. ...  .....+.....+++    
T Consensus       188 ~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~vr~~l~~~~gl~~~~~p~~~g~g~~~~~~v~~~~~~~~~~~~~~g~~~~  267 (584)
T 2gmh_A          188 IQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQTYGIGLKELWVIDEKKWKPGRVDHTVGWPLD  267 (584)
T ss_dssp             ECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHHHTTTTTTSCCCCEEEEEEEEEECCGGGCCTTEEEEEEETTSC
T ss_pred             ccCCCCcccccCCceEEECCEEEEeeCCCchHHHHHHHHhCCCCCCCchhHHhhhhhheecCcccccCCeEEEEEecccc
Confidence              35532       3588999999999999999887    4432211111 11211 111  11122232223332    


Q ss_pred             --CCCcEEEEecC--CCeEEEEEEecCCCCCCCCchHHHHHHHHhcCCCCChhhhHHHHhh--hcCCCeEEecCCccCCC
Q 010623          262 --DPSPILFYPIS--SNEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAA--VDGGNIKTMPNRSMPAA  335 (506)
Q Consensus       262 --~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  335 (506)
                        ..+..+++|..  ++..++.+..+.+.......  ..+.+.++..   .+.+.+.+...  ........++......+
T Consensus       268 ~~~~gg~~~~~~~~~~~~~~vg~~~~~~~~~~~~~--~~~~l~~~~~---~p~i~~~l~~~~~~~~~~~~~~~~~~~~~~  342 (584)
T 2gmh_A          268 RHTYGGSFLYHLNEGEPLLALGFVVGLDYQNPYLS--PFREFQRWKH---HPSIKPTLEGGKRIAYGARALNEGGFQSIP  342 (584)
T ss_dssp             TTSCEEEEEEECCSSSCEEEEEEEEETTCCCTTCC--HHHHHHHHTT---STTTHHHHTTCEEEEEEEEEEECCGGGGCC
T ss_pred             CCcCCceEEEEecCCCCeEEEEEEEecCcccccCC--hHHHHHHHHh---ChHHHHHhCCCeEEEecceEccCCCcccCC
Confidence              12345778888  67777777665432221111  2233333322   12233222111  00000012233334467


Q ss_pred             CCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHHHHhhhcCCCCChHHHHHH---HHHHHHHhcch-hHHHHHHHHHH
Q 010623          336 PYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNY---LESFYTLRKPV-ASTINTLAGAL  411 (506)
Q Consensus       336 ~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~---L~~Y~~~R~~~-~~~~~~~s~~~  411 (506)
                      +|..+|++|+|||||.++|+.|||+|+||+||.+||++|..+...++. ..+++   |++|+++|++. +...+..++.+
T Consensus       343 ~~~~~rv~LvGDAAh~~~P~~GqG~~~Ai~da~~LA~~L~~~~~~g~~-~~~~a~~~L~~Ye~~r~~~~v~~~l~~~r~~  421 (584)
T 2gmh_A          343 KLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFNQLTSENL-QSKTIGLHVTEYEDNLKNSWVWKELYSVRNI  421 (584)
T ss_dssp             CCEETTEEECTTTTCCCBTTTTBCHHHHHHHHHHHHHHHHHHHTCCCC-CCSSSSCCCTHHHHHHHTSHHHHHHHHTTTT
T ss_pred             ccccCCEEEEcccccccCccccccHHHHHHHHHHHHHHHHHHHHcCCc-chhhhhhhHHHHHHHHHHhHHHHHHHHHhCh
Confidence            788899999999999999999999999999999999999876422210 11343   89999999988 56666666655


Q ss_pred             HHHHc
Q 010623          412 YQVFS  416 (506)
Q Consensus       412 ~~~~~  416 (506)
                      ..++.
T Consensus       422 ~~~~~  426 (584)
T 2gmh_A          422 RPSCH  426 (584)
T ss_dssp             TGGGG
T ss_pred             hHHHH
Confidence            55553

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=99.97  E-value=9.3e-30  Score=266.16  Aligned_cols=340  Identities=16%  Similarity=0.065  Sum_probs=212.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH---CCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhH--HhhcccceecceEE
Q 010623           60 DADVIVVGAGVAGAALANTLAK---DGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDC--VEQIDAQRVFGYAL  134 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~---~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~--~~~~~~~~~~~~~~  134 (506)
                      .+||+|||||++|+++|+.|++   .|++|+|+|+.+. .....|..+.++....++.+|+.+.  +.........+..+
T Consensus         2 ~~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~-~~~~~g~~~~~~~~~~l~~lgi~~~~~~~~~~~~~~~~~~~   80 (511)
T 2weu_A            2 IRSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNV-RRIGVGEATFSTVRHFFDYLGLDEREWLPRCAGGYKLGIRF   80 (511)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC--------CCEECCTTHHHHHHHHTCCHHHHHHHTTCEEECEEEE
T ss_pred             cceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCC-CceeeccccCcchHHHHHHcCCCHHHHHHHcCCeEecccee
Confidence            4799999999999999999999   9999999999753 3334566788888999999999875  44432111111111


Q ss_pred             -----------EECCce-----e------------eee-------------cC-------CcCC----C-----------
Q 010623          135 -----------FKDGNR-----T------------QIS-------------YP-------LEKF----H-----------  151 (506)
Q Consensus       135 -----------~~~~~~-----~------------~~~-------------~~-------~~~~----~-----------  151 (506)
                                 ...+..     .            ...             +.       ...+    .           
T Consensus        81 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  160 (511)
T 2weu_A           81 ENWSEPGEYFYHPFERLRVVDGFNMAEWWLAVGDRRTSFSEACYLTHRLCEAKRAPRMLDGSLFASQVDESLGRSTLAEQ  160 (511)
T ss_dssp             ESSSSTTCEEEEESCCCCEETTEEHHHHHHHHC----CHHHHHCHHHHHHHTTBCSBCTTSCBCC------CCSCCGGGC
T ss_pred             cCCCCCCCceEcCCCCCCCCCCCchHHHHHhccccccCcccccccccCHHHhhhhHHhHhcCCccccccccccccccccC
Confidence                       111100     0            000             00       0001    1           


Q ss_pred             C--CcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCC-eEEEEEEEeCCccEEEEEcCeEEeecCCcccch-h
Q 010623          152 S--DVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKG-TIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLR-R  227 (506)
Q Consensus       152 ~--~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~-~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR-~  227 (506)
                      .  ...++.+++..+.+.|.+.+.+. |++++.++|+++..+++ .+.  .+.+.+|+  +++||+||+|||.+|.+| +
T Consensus       161 ~~~~~~~~~~~~~~l~~~L~~~a~~~-gv~~~~~~v~~i~~~~~~~~~--~v~~~~g~--~~~ad~vV~A~G~~S~~~~~  235 (511)
T 2weu_A          161 RAQFPYAYHFDADEVARYLSEYAIAR-GVRHVVDDVQHVGQDERGWIS--GVHTKQHG--EISGDLFVDCTGFRGLLINQ  235 (511)
T ss_dssp             CSCCSCEEEECHHHHHHHHHHHHHHT-TCEEEECCEEEEEECTTSCEE--EEEESSSC--EEECSEEEECCGGGCCCCCC
T ss_pred             cCCCCeeEEEcHHHHHHHHHHHHHHC-CCEEEECeEeEEEEcCCCCEE--EEEECCCC--EEEcCEEEECCCcchHHHHH
Confidence            1  23456789999999999999886 77887779999987544 333  34456775  477999999999999995 4


Q ss_pred             hccCCCCC---CccceeeEEEe-ccCCC--CCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCCCCCCCchHHHHHHHH
Q 010623          228 SLCNPKVD---VPSCFVGLVLE-NCNLP--FENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMANYLKT  301 (506)
Q Consensus       228 ~l~~~~~~---~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (506)
                      .++.+...   ......++... ....+  ..........+.++++++|..+ ...+.+....+   ..+.++..+.+.+
T Consensus       236 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~-~~~~g~~~~~~---~~~~~~~~~~l~~  311 (511)
T 2weu_A          236 TLGGRFQSFSDVLPNNRAVALRVPRENDEDMRPYTTATAMSAGWMWTIPLFK-RDGNGYVYSDE---FISPEEAERELRS  311 (511)
T ss_dssp             CTCCCEEECTTTCCCCEEEEEEEECSSGGGCCSSEEEEEETTEEEEEEECSS-EEEEEEEECTT---TSCHHHHHHHHHH
T ss_pred             HhCCCCccccccCcccceEEEEeccCCCCCCCcceeceecCCCcEEEEECCC-ceEEEEEECCC---CCCHHHHHHHHHH
Confidence            55554321   11122222211 11111  1222234456677899999987 34444433322   2234455555555


Q ss_pred             hcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHHHHhhhcCCCC
Q 010623          302 VVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLN  381 (506)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~  381 (506)
                      .+.. . +.+          ......+.......++..+||+|+|||||.++|+.|||+|+|++||..|++.|...    
T Consensus       312 ~~~~-~-~~~----------~~~~~~~~~~~~~~~~~~~rv~liGDAAh~~~P~~g~G~~~a~~da~~La~~l~~~----  375 (511)
T 2weu_A          312 TVAP-G-RDD----------LEANHIQMRIGRNERTWINNCVAVGLSAAFVEPLESTGIFFIQHAIEQLVKHFPGE----  375 (511)
T ss_dssp             HHCT-T-CTT----------SCCEEEECCCEEESCSEETTEEECGGGTEECCGGGCCHHHHHHHHHHHHHHTCCCT----
T ss_pred             HhCc-c-ccc----------ccceeEEeeccccccccCCCEEEEechhhccCccccccHHHHHHHHHHHHHHhccC----
Confidence            4421 1 111          11122232223345667799999999999999999999999999999999998741    


Q ss_pred             ChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHH
Q 010623          382 DAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMR  427 (506)
Q Consensus       382 ~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r  427 (506)
                        ...+.+++.|+++|+++...+.......+.+......+.+...+
T Consensus       376 --~~~~~~l~~Y~~~~~~~~~~~~~~~~~~y~~~~r~~~~fw~~~~  419 (511)
T 2weu_A          376 --RWDPVLISAYNERMAHMVDGVKEFLVLHYKGAQREDTPYWKAAK  419 (511)
T ss_dssp             --TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSHHHHHHH
T ss_pred             --CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcHHHHhcc
Confidence              12357899999999999988887777666655443345554443

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=99.97  E-value=1.2e-29  Score=266.95  Aligned_cols=339  Identities=13%  Similarity=0.095  Sum_probs=214.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH---CCCcEEEEecCCCCCCcccccccccchHH-HHHHhCchhH--Hhhcccceecce
Q 010623           59 FDADVIVVGAGVAGAALANTLAK---DGRRVHVIERDLSEPDRIVGELLQPGGYL-KLIELGLEDC--VEQIDAQRVFGY  132 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~---~G~~v~vvE~~~~~~~~~~g~~l~~~~~~-~l~~~g~~~~--~~~~~~~~~~~~  132 (506)
                      ..+||+|||||++|+++|+.|++   .|++|+|||+.+.+. ...|..+.+++.+ +++.+|+.+.  +.........+.
T Consensus        24 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~~-~~~g~~~~p~~~~~~l~~lGi~~~~~~~~~~~~~~~g~  102 (550)
T 2e4g_A           24 KIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPT-LGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAI  102 (550)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCCCC-CCCCEECCTHHHHHTHHHHTCCHHHHHHHTTCEEECEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCCCc-cceeeeechhHHHHHHHHhCCChHHHHHhcCCeEEEee
Confidence            35899999999999999999999   999999999975433 3346778889899 9999999865  543221111222


Q ss_pred             EE--EECC-------------c-eeeeecC------------------------------------CcCCC---------
Q 010623          133 AL--FKDG-------------N-RTQISYP------------------------------------LEKFH---------  151 (506)
Q Consensus       133 ~~--~~~~-------------~-~~~~~~~------------------------------------~~~~~---------  151 (506)
                      .+  |...             . .....+.                                    ..+..         
T Consensus       103 ~~~~w~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (550)
T 2e4g_A          103 KFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGS  182 (550)
T ss_dssp             EEESSSSCCCCCSSCCEETTEESEEEEESSCCCEETTEEHHHHHHHHHHTTSCCCCHHHHHCSHHHHHHTTBCSBCTTSC
T ss_pred             eEeecccccccccccccccCCCCeeEecCCccCCCCcccHHHHHHhhcccccccccccccccchhhHHHhhhhhHhhcCC
Confidence            11  1110             0 0000000                                    00000         


Q ss_pred             -CCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCC-eEEEEEEEeCCccEEEEEcCeEEeecCCcccc-hhh
Q 010623          152 -SDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKG-TIKGVQYKTKAGEELTAYAPLTIVCDGCFSNL-RRS  228 (506)
Q Consensus       152 -~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~-~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~v-R~~  228 (506)
                       ....++.+++..+.+.|.+.+.+.+|++++.++|+++..+++ .+.  .+...+|+  +++||+||+|||.+|.+ ++.
T Consensus       183 ~~~~~~~~~~~~~l~~~L~~~~~~~~Gv~i~~~~V~~i~~~~~g~~~--~v~~~~G~--~i~ad~vI~A~G~~S~~~~~~  258 (550)
T 2e4g_A          183 KVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIE--SVRTATGR--VFDADLFVDCSGFRGLLINKA  258 (550)
T ss_dssp             BCSCCEEEECHHHHHHHHHHHHHHHSCCEEEECCEEEEEECTTSCEE--EEEETTSC--EEECSEEEECCGGGCCCCCCC
T ss_pred             CCCCcceEEcHHHHHHHHHHHHHhcCCcEEEECeEeEEEEcCCCCEE--EEEECCCC--EEECCEEEECCCCchhhHHHH
Confidence             122346689999999999999886467777779999987544 333  34456775  46799999999999999 566


Q ss_pred             ccCCCCCCc---cceeeEEEe-ccCCC---CCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCCCCCCCchHHHHHHHH
Q 010623          229 LCNPKVDVP---SCFVGLVLE-NCNLP---FENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMANYLKT  301 (506)
Q Consensus       229 l~~~~~~~~---~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (506)
                      ++.+.....   .....+... ....+   ..........+.++.+++|+.+. ..+.+.....   ..+.++..+.+.+
T Consensus       259 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ipl~~~-~~~g~v~~~~---~~~~~~~~~~l~~  334 (550)
T 2e4g_A          259 MEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGR-FGTGYVYSSR---FATEDEAVREFCE  334 (550)
T ss_dssp             TCCCEEECTTTCCCCEEEEEEEECCHHHHCCCSSEEEEECSSEEEEEEECSSE-EEEEEEECTT---TSCHHHHHHHHHH
T ss_pred             hCCCcccccccccccceEEEeecccCCcccCCCceeeeecCCceEEEccCCCc-cceEEEEecC---CCChHHHHHHHHH
Confidence            665432111   111222211 11111   11222333456778899999773 3333333221   1234455556665


Q ss_pred             hcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHHHHhhhcCCCC
Q 010623          302 VVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLN  381 (506)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~  381 (506)
                      .+...  +.+          .....++.......++..+|++++|||||.++|++|||+|+|++||..|++.|...    
T Consensus       335 ~~~~~--p~l----------~~~~~i~~~~~~~~~~~~~rvvliGDAAh~~~P~~GqGi~~a~~da~~La~~L~~~----  398 (550)
T 2e4g_A          335 MWHLD--PET----------QPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDK----  398 (550)
T ss_dssp             HTTCC--TTT----------SCCEEEECCCEEESCSEETTEEECSTTTEECCGGGSCHHHHHHHHHHHHHHTCCCT----
T ss_pred             hhCcC--ccc----------CCCceEEecCCCccccccCCEEEEehhhcccCccchhhHHHHHHHHHHHHHhcccc----
Confidence            44321  111          11122233333345567899999999999999999999999999999999988631    


Q ss_pred             ChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHH
Q 010623          382 DAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARK  424 (506)
Q Consensus       382 ~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~  424 (506)
                        ...+.+++.|+++|+++...+.......+.+-.....+.+.
T Consensus       399 --~~~~~~l~~Y~~~~~~~~~~i~~~~~~~y~~~~r~~~~fw~  439 (550)
T 2e4g_A          399 --SLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWR  439 (550)
T ss_dssp             --TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSSHHHH
T ss_pred             --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence              22357999999999999998888777666653333234443

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=99.97  E-value=8.3e-30  Score=267.86  Aligned_cols=325  Identities=16%  Similarity=0.113  Sum_probs=206.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH---CCCcEEEEecCCCCCCcccccccccchHH-HHHHhCchhH--HhhcccceecceE
Q 010623           60 DADVIVVGAGVAGAALANTLAK---DGRRVHVIERDLSEPDRIVGELLQPGGYL-KLIELGLEDC--VEQIDAQRVFGYA  133 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~---~G~~v~vvE~~~~~~~~~~g~~l~~~~~~-~l~~~g~~~~--~~~~~~~~~~~~~  133 (506)
                      .+||+|||||++|+++|+.|++   .|++|+|+|+.+.+. ...|..+.+++.. .++.+|+.+.  +.........+..
T Consensus         5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~~-~~~g~~~~~~~~~~~l~~lG~~~~~~~~~~~~~~~~g~~   83 (538)
T 2aqj_A            5 IKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAIPR-IGVGEATIPSLQKVFFDFLGIPEREWMPQVNGAFKAAIK   83 (538)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSSCC-CCSCEECCTHHHHHTHHHHTCCHHHHGGGGTCEEECEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCCCC-cCCCcccchhHHHHHHHHhCCCHHHHHHhcCchhhCCcc
Confidence            4899999999999999999999   999999999975433 3346778888888 9999998864  4332211111111


Q ss_pred             ----------------EEECCcee---eeec--------------C---------------C------cCCCCCcccccc
Q 010623          134 ----------------LFKDGNRT---QISY--------------P---------------L------EKFHSDVAGRGF  159 (506)
Q Consensus       134 ----------------~~~~~~~~---~~~~--------------~---------------~------~~~~~~~~~~~i  159 (506)
                                      +...+...   ...+              .               .      ..+ ..+..+.+
T Consensus        84 ~~~w~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~i  162 (538)
T 2aqj_A           84 FVNWRKSPDPSRDDHFYHLFGNVPNCDGVPLTHYWLRKREQGFQQPMEYACYPQPGALDGKLAPCLSDGTR-QMSHAWHF  162 (538)
T ss_dssp             EESCSSSCCTTSCCEEEEESSCCCEETTEEHHHHHHHHHHTTCCSCHHHHHCSCHHHHHTTBCSBCTTCCB-CSCCEEEE
T ss_pred             ccCcCcccccCCCCceECCCCccCccccCchhHHHHHhcccccccCccccccccccHhhhccchHhhcCCc-CCCccEEE
Confidence                            11111000   0000              0               0      000 12335678


Q ss_pred             cchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCe-EEEEEEEeCCccEEEEEcCeEEeecCCcccchh-hccCCCCCCc
Q 010623          160 HNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGT-IKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRR-SLCNPKVDVP  237 (506)
Q Consensus       160 ~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~-v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~-~l~~~~~~~~  237 (506)
                      ++..+...|.+.+.+. |++++.++|+++..++++ +.  .+...+|+  +++||+||+|||.+|.+|+ .++.+.....
T Consensus       163 ~~~~l~~~L~~~a~~~-gv~~~~~~v~~i~~~~~g~~~--~v~~~~g~--~i~ad~vV~A~G~~s~~~~~~lg~~~~~~~  237 (538)
T 2aqj_A          163 DAHLVADFLKRWAVER-GVNRVVDEVVDVRLNNRGYIS--NLLTKEGR--TLEADLFIDCSGMRGLLINQALKEPFIDMS  237 (538)
T ss_dssp             CHHHHHHHHHHHHHHT-TCEEEECCEEEEEECTTSCEE--EEEETTSC--EECCSEEEECCGGGCCCCCCCTCCCEEECT
T ss_pred             eHHHHHHHHHHHHHHC-CCEEEEeeEeEEEEcCCCcEE--EEEECCCc--EEEeCEEEECCCCchhhHHHHhCCCccccc
Confidence            9999999999999886 788887799999876443 33  34456775  4779999999999999954 4554322111


Q ss_pred             ---cceeeEEEe-ccCCC---CCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCCCCCCCchHHHHHHHHhcCCCCChh
Q 010623          238 ---SCFVGLVLE-NCNLP---FENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPRE  310 (506)
Q Consensus       238 ---~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (506)
                         ....++... ....+   ..........+.++++++|..++ ..+.+.+...   ..+.++..+.+.+.+...   .
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~-~~~g~v~~~~---~~~~~~~~~~l~~~~~~~---~  310 (538)
T 2aqj_A          238 DYLLCDSAVASAVPNDDARDGVEPYTSSIAMNSGWTWKIPMLGR-FGSGYVFSSH---FTSRDQATADFLKLWGLS---D  310 (538)
T ss_dssp             TTCCCCEEEEEEEECCHHHHCCCSSEEEEECSSEEEEEEEETTE-EEEEEEECTT---TSCHHHHHHHHHHHHTCC---T
T ss_pred             cccccceEEEEecccCCcccCCCCceeeeecCCceEEEecCCCc-eEEEEEEcCC---CCChHHHHHHHHHHhcCC---C
Confidence               112222221 11111   11122334566778999999874 3333333221   123345555555544321   1


Q ss_pred             hhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHH
Q 010623          311 IFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYL  390 (506)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L  390 (506)
                      +          .....++.......+|..+||+|+|||||.++|++|||+|+|++||..|++.|...      ...+.+|
T Consensus       311 ~----------~~~~~~~~~~~~~~~~~~grvvliGDAAh~~~P~~gqG~~~a~~da~~La~~L~~~------~~~~~~l  374 (538)
T 2aqj_A          311 N----------QPLNQIKFRVGRNKRAWVNNCVSIGLSSCFLEPLESTGIYFIYAALYQLVKHFPDT------SFDPRLS  374 (538)
T ss_dssp             T----------CCCEEEECCCEEESCSEETTEEECGGGTEECCGGGSCHHHHHHHHHHHHHHTCCBT------TCCHHHH
T ss_pred             C----------CCceEEeeccccccccccCCEEEEcccccccCcchhccHHHHHHHHHHHHHHhhcc------CCCHHHH
Confidence            1          11223333333456777899999999999999999999999999999999988631      1235789


Q ss_pred             HHHHHHhcchhHHHHHHHHHHHHH
Q 010623          391 ESFYTLRKPVASTINTLAGALYQV  414 (506)
Q Consensus       391 ~~Y~~~R~~~~~~~~~~s~~~~~~  414 (506)
                      +.|+++|+++...+.......+..
T Consensus       375 ~~Y~~~~~~~~~~~~~~~~~~y~~  398 (538)
T 2aqj_A          375 DAFNAEIVHMFDDCRDFVQAHYFT  398 (538)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcc
Confidence            999999999988876655554443

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=99.95  E-value=3.5e-27  Score=240.81  Aligned_cols=322  Identities=14%  Similarity=0.110  Sum_probs=179.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCc---c-cccccccchHHHHHHhCchhHHhhcccceecceEE
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDR---I-VGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYAL  134 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~---~-~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~  134 (506)
                      ++.||+||||||+||++|+.|+++|++|+|+||.+.....   . .+..+...+...++.+|+......  .....+..+
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~~--~~~~~~~~~   98 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAHNAVTVQREVALDVNEWPSE--EFGYFGHYY   98 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCCGGGSTTSCCCCCCCBCHHHHHHHHHTTCCCSCHH--HHCEEEEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCChHhhcccccccchhccchhhhhhhhcChhhhhhh--cccccceeE
Confidence            4589999999999999999999999999999998632211   1 112234456667777765321111  112333333


Q ss_pred             EECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceE--EEEEeeCCeEEEEEEEeCCccEEEEEc
Q 010623          135 FKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTV--TSLLEEKGTIKGVQYKTKAGEELTAYA  212 (506)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v--~~~~~~~~~v~~v~v~~~~G~~~~i~a  212 (506)
                      ...+.. ...+.. .  ....+..+++..+...|.+.+.+. +++++..++  .++                 +....++
T Consensus        99 ~~~~~~-~~~~~~-~--~~~~~~~v~~~~l~~~L~~~~~~~-Gv~v~~~~v~~~~l-----------------~~~~~~a  156 (430)
T 3ihm_A           99 YVGGPQ-PMRFYG-D--LKAPSRAVDYRLYQPMLMRALEAR-GGKFCYDAVSAEDL-----------------EGLSEQY  156 (430)
T ss_dssp             EECSSS-CEEEEE-E--EEEEEBEECHHHHHHHHHHHHHHT-TCEEEECCCCGGGH-----------------HHHHTTS
T ss_pred             EECCCC-ccccch-h--cCCcceeecHHHHHHHHHHHHHHc-CCEEEEEecchhhh-----------------hhhcccC
Confidence            332221 111110 0  012346788889999999999887 566654321  111                 0001238


Q ss_pred             CeEEeecCCcccchhhccCCC---CCCccceeeEEEe-ccCCCCC-CeeEEEecCCCcEEEEecC--CCeEEEEE--Eec
Q 010623          213 PLTIVCDGCFSNLRRSLCNPK---VDVPSCFVGLVLE-NCNLPFE-NHGHVVLADPSPILFYPIS--SNEVRCLV--DIP  283 (506)
Q Consensus       213 ~~vV~AdG~~S~vR~~l~~~~---~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~p~~--~~~~~~~~--~~~  283 (506)
                      |+||+|||.+|.+|.......   ...+......... ....+.+ ......+...+.++++|..  ++...+.+  ..+
T Consensus       157 d~VV~AdG~~S~~~~~~~~~~~~~~~~p~r~~~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~p~~~~~g~~~~~~~~~~~  236 (430)
T 3ihm_A          157 DLLVVCTGKYALGKVFEKQSENSPFEKPQRALCVGLFKGIKEAPIRAVTMSFSPGHGELIEIPTLSFNGMSTALVLENHI  236 (430)
T ss_dssp             SEEEECCCCTTGGGGSCBCGGGCCCSSCSSEEEEEEEESBCCCSSCCEEEEEETTTEEEEEEEEEETTEEEEEEEEEECT
T ss_pred             CEEEECCCCcchHHhccCCCCCCcccCCCeeEEEEEEccCCCCCcCeeeeeecCCCcceEEecccCCCcceEEEEEEecC
Confidence            999999999998875432211   1111122222111 1111222 2233344555677888863  23333333  333


Q ss_pred             CCCCCCC-------CchHHHHHHHHhcCCCCChhhhHHHHhhh--c---CCCe---EEecCCccCCCCCCCCcEEE-Ecc
Q 010623          284 GQKVPSI-------SNGEMANYLKTVVAPQIPREIFHSFVAAV--D---GGNI---KTMPNRSMPAAPYPTPGALL-MGD  347 (506)
Q Consensus       284 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~---~~~~~~~~~~~~~~~~rv~L-vGD  347 (506)
                      ....+.+       +.++..+.+.+.+.+.. +.+.+.+....  .   ...+   ..++.......+|..||++| +||
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GD  315 (430)
T 3ihm_A          237 GSDLEVLAHTKYDDDPRAFLDLMLEKLGKHH-PSVAERIDPAEFDLANSSLDILQGGVVPAFRDGHATLNNGKTIIGLGD  315 (430)
T ss_dssp             TSSSGGGGTSCTTTCHHHHHHHHHHHHHHHC-HHHHTTBCTTTCEESSSTTSEEEECCCCEEBCSEEECTTSCEEEECGG
T ss_pred             CCcHHHhccccCCCCHHHHHHHHHHHHHHhC-ccHHHHHhhchhccccCccceeecceeecccccccccCCCCEEEEecC
Confidence            2221111       33333333333222211 12221111111  0   1111   23344344567888999888 999


Q ss_pred             CCCCCCCCcchhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhc-chhHHHHHHHHHH
Q 010623          348 AFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRK-PVASTINTLAGAL  411 (506)
Q Consensus       348 AAh~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~-~~~~~~~~~s~~~  411 (506)
                      |||.++|++|||+|+||+||.+|+++|....   +   .+++|.+|+.+|+ +++......++.+
T Consensus       316 Aah~~~p~~g~G~~~a~~da~~l~~~l~~~~---~---~~~~~~~~~~~r~~~~~~~~~~~~~~~  374 (430)
T 3ihm_A          316 IQATVDPVLGQGANMASYAAWILGEEILAHS---V---YDLRFSEHLERRRQDRVLCATRWTNFT  374 (430)
T ss_dssp             GTEECCGGGCCHHHHHHHHHHHHHHHHHHCS---C---CSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCchhhhHHHHHHHHHHHHHHHHhcC---C---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999752   1   4589999999998 5555555555443

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.93  E-value=3.1e-26  Score=237.61  Aligned_cols=308  Identities=14%  Similarity=0.060  Sum_probs=180.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD  137 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  137 (506)
                      +..+||+||||||+|+++|+.|++.|++|+|+|+.+.... .....+.+.+++.++.+|+++....+.            
T Consensus        90 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~-~~~~~~~~~~~~~l~~~g~~~~~~~~~------------  156 (497)
T 2bry_A           90 CTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSR-HNVLHLWPFTIHDLRALGAKKFYGRFC------------  156 (497)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCC-CCEEECCHHHHHHHHTTTHHHHCTTTT------------
T ss_pred             cCCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCC-CCcccCChhHHHHHHHcCCcccccccc------------
Confidence            3468999999999999999999999999999999865432 233446777888888888764321110            


Q ss_pred             CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEee--CCeEEEEEEEeC-CccEEEEEcC
Q 010623          138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEE--KGTIKGVQYKTK-AGEELTAYAP  213 (506)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~--~~~v~~v~v~~~-~G~~~~i~a~  213 (506)
                                    .. ....+++..+.+.|.+.+.+. +++++.++ |+++..+  ++....|++.+. +|+..+++||
T Consensus       157 --------------~~-~~~~~~~~~l~~~L~~~~~~~-gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad  220 (497)
T 2bry_A          157 --------------TG-TLDHISIRQLQLLLLKVALLL-GVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFD  220 (497)
T ss_dssp             --------------CT-TCCEEEHHHHHHHHHHHHHHT-TCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBS
T ss_pred             --------------cc-ccccCCHHHHHHHHHHHHHhC-CCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcC
Confidence                          00 012356788999999999886 78888884 9999864  233334555445 6733347799


Q ss_pred             eEEeecCCcccchhhccCCCCCCc-cceeeEEEec-----cCCCCCCeeEEEecC----------CC-cE-EEEecCCCe
Q 010623          214 LTIVCDGCFSNLRRSLCNPKVDVP-SCFVGLVLEN-----CNLPFENHGHVVLAD----------PS-PI-LFYPISSNE  275 (506)
Q Consensus       214 ~vV~AdG~~S~vR~~l~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~----------~~-~~-~~~p~~~~~  275 (506)
                      +||+|||++|.+|+..++...+.. ......+...     ..... ..+..+..+          .+ .. .++|..++.
T Consensus       221 ~VV~A~G~~S~~r~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~-~~G~~~~~~~~~f~~~~~~~Gi~~~~~~~~~~~~  299 (497)
T 2bry_A          221 VLISAAGGKFVPEGFTIREMRGKLAIGITANFVNGRTVEETQVPE-ISGVARIYNQKFFQSLLKATGIDLENIVYYKDET  299 (497)
T ss_dssp             EEEECCCTTCCCTTCEEEEEECSCCEEEEEEEECCCCHHHHTSCC-BCC----CCSSHHHHHHHHHCCCEEEEEEEESSE
T ss_pred             EEEECCCCCcccccccchhhcCceeEeeeeeeeeeccccccchhh-cCceEEecChhhhHhHHhhcCCCcccccccCCCe
Confidence            999999999999987765443332 1111111110     00110 011111100          01 11 134444554


Q ss_pred             EEEEEEecC-----CC-----CC---------CCCchHHHHH---HHHhcCCCCChhhh---HHHHh---hh-cCCCeEE
Q 010623          276 VRCLVDIPG-----QK-----VP---------SISNGEMANY---LKTVVAPQIPREIF---HSFVA---AV-DGGNIKT  326 (506)
Q Consensus       276 ~~~~~~~~~-----~~-----~~---------~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~---~~-~~~~~~~  326 (506)
                      ..+......     ..     .+         ..+.+++...   ..++..+...+.+.   ..+..   .+ +......
T Consensus       300 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  379 (497)
T 2bry_A          300 HYFVMTAKKQCLLRLGVLRQDLSETDQLLGKANVVPEALQRFARAAADFATHGKLGKLEFAQDARGRPDVAAFDFTSMMR  379 (497)
T ss_dssp             EEEEEEECHHHHHHTTSBSSCCSSHHHHTSTTTBCHHHHHHHHHHHHHHHTTTTTCSCCBCBCTTSSBCEEEEECSEEEE
T ss_pred             EEEEeccccccccccceeeccccchHhhhhhccCCHHHHHHhhccccccchhhccccchhhhhccCCCCCceeeeEEEEe
Confidence            333332110     00     00         0111111100   01111111110000   00100   01 2234556


Q ss_pred             ecCCccCCCCCCCCc-EEEEccCCCC-CCCCcchhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHH
Q 010623          327 MPNRSMPAAPYPTPG-ALLMGDAFNM-RHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVAST  403 (506)
Q Consensus       327 ~~~~~~~~~~~~~~r-v~LvGDAAh~-~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~  403 (506)
                      |+...+.+.+|..|| ++|+|||||. +.| .|||+|+||+||.+|+|+|+.+..   +....++|    .+|++.+..
T Consensus       380 ~~~~~r~a~~~~~gRr~~l~Gda~~~~~~p-~g~G~n~g~~~a~~l~~~l~~~~~---g~~~~~~l----~~r~~~~~~  450 (497)
T 2bry_A          380 AESSARVQEKHGARLLLGLVGDCLVEPFWP-LGTGVARGFLAAFDAAWMVKRWAE---GAGPLEVL----AERESLYQL  450 (497)
T ss_dssp             ESCSEEEEEETTEEEEEEECGGGTBCCCGG-GCCHHHHHHHHHHHHHHHHHHHHT---TCCHHHHH----HHHHHHHTT
T ss_pred             cchhhHHHHhcCCcccceEeccccccCcCc-cccchhhHHHHHHHHHHHHHHHhC---CCCccchh----hhHHHHhhh
Confidence            788888889999998 9999999994 455 999999999999999999998642   22334555    778776653

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.62  E-value=7.6e-15  Score=147.13  Aligned_cols=195  Identities=13%  Similarity=0.081  Sum_probs=107.1

Q ss_pred             ccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCccc-chhhccCCCC
Q 010623          157 RGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN-LRRSLCNPKV  234 (506)
Q Consensus       157 ~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~-vR~~l~~~~~  234 (506)
                      ..++...+.+.|.+.+.+. +++++.+ +|+++..+++++   .+.+.+|   +++||.||.|+|.+|. +.+.++...+
T Consensus       159 ~~~~~~~~~~~l~~~~~~~-g~~i~~~~~v~~i~~~~~~~---~v~~~~g---~~~a~~vV~A~G~~s~~l~~~~~~~~~  231 (382)
T 1ryi_A          159 VHVEPYFVCKAYVKAAKML-GAEIFEHTPVLHVERDGEAL---FIKTPSG---DVWANHVVVASGVWSGMFFKQLGLNNA  231 (382)
T ss_dssp             CBCCHHHHHHHHHHHHHHT-TCEEETTCCCCEEECSSSSE---EEEETTE---EEEEEEEEECCGGGTHHHHHHTTCCCC
T ss_pred             eEEcHHHHHHHHHHHHHHC-CCEEEcCCcEEEEEEECCEE---EEEcCCc---eEEcCEEEECCChhHHHHHHhcCCCCc
Confidence            4566778999999999887 6888877 499998877754   3445666   4779999999999996 7777664332


Q ss_pred             CCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCCCCCCCchHHHHHHHHhcCCCCChhhhH
Q 010623          235 DVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFH  313 (506)
Q Consensus       235 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (506)
                      -.+  ..+..+. ....+...  ...+.+  ..+++|..++...+..............++..+.+.+.+...+| .+..
T Consensus       232 ~~~--~~g~~~~~~~~~~~~~--~~~~~~--~~~~~p~~~g~~~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~~p-~l~~  304 (382)
T 1ryi_A          232 FLP--VKGECLSVWNDDIPLT--KTLYHD--HCYIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLP-AIQN  304 (382)
T ss_dssp             CEE--EEEEEEEEECCSSCCC--SEEEET--TEEEEECTTSEEEEECCCEETCCCCSCCHHHHHHHHHHHHHHCG-GGGG
T ss_pred             eec--cceEEEEECCCCCCcc--ceEEcC--CEEEEEcCCCeEEEeecccccCCCCCCCHHHHHHHHHHHHHhCC-CcCC
Confidence            222  2232222 11111111  122332  56778887764433332111111111122222222222211122 1110


Q ss_pred             HHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCC-----CCCCCCcchhhHHHHHHHHHHHHHhhh
Q 010623          314 SFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAF-----NMRHPLTGGGMTVALSDIVILRNLLRH  376 (506)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAA-----h~~~P~~GqG~n~ai~Da~~La~~L~~  376 (506)
                             ......|.-    ...+..++..++|++.     +...+++|.|+..|...|..+++.+..
T Consensus       305 -------~~~~~~w~g----~~~~t~d~~p~ig~~~~~~~l~~~~G~~g~G~~~a~~~g~~la~~i~~  361 (382)
T 1ryi_A          305 -------MKVDRFWAG----LRPGTKDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGALISDLIMN  361 (382)
T ss_dssp             -------SEEEEEEEE----EEEECSSSCCEEEEETTEEEEEEEECCSSCTTTTHHHHHHHHHHHHTT
T ss_pred             -------CceeeEEEE----ecccCCCCCcEeccCCCcCCEEEEEcCCcchHHHhHHHHHHHHHHHhC
Confidence                   001111210    0112234556778763     345778999999999999999998874

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.56  E-value=1e-13  Score=139.89  Aligned_cols=116  Identities=19%  Similarity=0.135  Sum_probs=73.3

Q ss_pred             cccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcc-cchhhccCCCCC
Q 010623          158 GFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFS-NLRRSLCNPKVD  235 (506)
Q Consensus       158 ~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S-~vR~~l~~~~~~  235 (506)
                      .++...+...|.+.+++. +++++.+ +|+++..+++++.+|+  +.+|   +++||.||.|+|.+| .+++.++...+.
T Consensus       170 ~~~~~~~~~~l~~~~~~~-g~~i~~~~~v~~i~~~~~~~~~v~--~~~g---~~~a~~vV~a~G~~s~~l~~~~g~~~~~  243 (405)
T 2gag_B          170 IAKHDHVAWAFARKANEM-GVDIIQNCEVTGFIKDGEKVTGVK--TTRG---TIHAGKVALAGAGHSSVLAEMAGFELPI  243 (405)
T ss_dssp             BCCHHHHHHHHHHHHHHT-TCEEECSCCEEEEEESSSBEEEEE--ETTC---CEEEEEEEECCGGGHHHHHHHHTCCCCE
T ss_pred             cCCHHHHHHHHHHHHHHC-CCEEEcCCeEEEEEEeCCEEEEEE--eCCc---eEECCEEEECCchhHHHHHHHcCCCCCc
Confidence            455668889999999887 7888886 5999998877655444  5566   367999999999999 688877765432


Q ss_pred             CccceeeEEEeccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEe
Q 010623          236 VPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDI  282 (506)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  282 (506)
                      .+.....+...  ..+.. ....+.......++.|..++...+....
T Consensus       244 ~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~y~~p~~~g~~~ig~~~  287 (405)
T 2gag_B          244 QSHPLQALVSE--LFEPV-HPTVVMSNHIHVYVSQAHKGELVMGAGI  287 (405)
T ss_dssp             EEEEEEEEEEE--EBCSC-CCSEEEETTTTEEEEECTTSEEEEEEEE
T ss_pred             cccceeEEEec--CCccc-cCceEEeCCCcEEEEEcCCCcEEEEecc
Confidence            22211111111  11111 1112334445677888877765555443

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.56  E-value=1.4e-13  Score=142.99  Aligned_cols=213  Identities=12%  Similarity=0.003  Sum_probs=109.7

Q ss_pred             cccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEeecCCccc-chhh-ccCCC
Q 010623          158 GFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSN-LRRS-LCNPK  233 (506)
Q Consensus       158 ~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~-vR~~-l~~~~  233 (506)
                      .++...+...|.+.+.+. |++++++ +|+++..++ ++.+|++.+ .+|++.+++||.||+|+|.+|. +++. ++...
T Consensus       145 ~v~~~~l~~~l~~~a~~~-Gv~i~~~~~V~~l~~~~-~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~~l~~~~l~~~~  222 (501)
T 2qcu_A          145 WVDDARLVLANAQMVVRK-GGEVLTRTRATSARREN-GLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFDDGMHLPS  222 (501)
T ss_dssp             EECHHHHHHHHHHHHHHT-TCEEECSEEEEEEEEET-TEEEEEEEETTTCCEEEEEESCEEECCGGGHHHHHHHHTCCCC
T ss_pred             EEcHHHHHHHHHHHHHHc-CCEEEcCcEEEEEEEeC-CEEEEEEEECCCCCEEEEECCEEEECCChhHHHHHHHhccCCc
Confidence            467788999999999988 6788876 599998876 455676655 4676667899999999999995 5553 44321


Q ss_pred             CCCccceeeEEEe-ccCCCCCCeeEEEec-CCCcEEEEecCCCeEEEEEEe-cC--C-CCCCCCchHHHHHHHHhcCCCC
Q 010623          234 VDVPSCFVGLVLE-NCNLPFENHGHVVLA-DPSPILFYPISSNEVRCLVDI-PG--Q-KVPSISNGEMANYLKTVVAPQI  307 (506)
Q Consensus       234 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~-~~--~-~~~~~~~~~~~~~~~~~~~~~~  307 (506)
                      ...-....|..+. +...+. ....++-. ++..++++|..++...+..+. +.  . ..+..+.++.. .+.+.....+
T Consensus       223 ~~~i~p~rG~~~~~~~~~~~-~~~~~~~~~dg~~~~~~P~~~g~~~iG~t~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~  300 (501)
T 2qcu_A          223 PYGIRLIKGSHIVVPRVHTQ-KQAYILQNEDKRIVFVIPWMDEFSIIGTTDVEYKGDPKAVKIEESEIN-YLLNVYNTHF  300 (501)
T ss_dssp             SSCBCCEEEEEEEEECSSSC-SCEEEEECTTSCEEEEEEETTTEEEEECCCEECCSCGGGCCCCHHHHH-HHHHHHHHHB
T ss_pred             ccccccceeEEEEECCCCCC-ceEEEeecCCCCEEEEEEcCCCcEEEcCCCCCCCCCcCCCCCCHHHHH-HHHHHHHHhc
Confidence            1111112222221 222222 22222222 345678889887643222211 01  1 11122333332 2222111111


Q ss_pred             ChhhhHHHHhhhcCCCeEEecCCc--cC-CCCCCCCcEEE--EccCCCCCCCCcchhhHHHHHHHHHHHHHhhhc
Q 010623          308 PREIFHSFVAAVDGGNIKTMPNRS--MP-AAPYPTPGALL--MGDAFNMRHPLTGGGMTVALSDIVILRNLLRHL  377 (506)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~rv~L--vGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~  377 (506)
                      |..+...   .+.....-..|...  .+ ..+...+.++.  .+|..|.+...+|.|+.++-.=|..+++.+...
T Consensus       301 p~~l~~~---~v~~~~aG~Rp~~~d~~p~~~~~~~~~~i~~~~~~~~~gl~~i~Gg~~t~~~~~Ae~~~~~~~~~  372 (501)
T 2qcu_A          301 KKQLSRD---DIVWTYSGVRPLCDDESDSPQAITRDYTLDIHDENGKAPLLSVFGGKLTTYRKLAEHALEKLTPY  372 (501)
T ss_dssp             SSCCCGG---GCCEEEEEEECCBCCCCSSGGGSCCCCEEEEEEETTEEEEEEEECCCGGGHHHHHHHHHHHHGGG
T ss_pred             CCCCCcc---cEEEEEEEEeeecCCCCCccccCcCceEEEecccCCCCCeEEEeCccccchHHHHHHHHHHHHHh
Confidence            1011100   00000001112111  00 11122345666  577777777778888888877777777766543

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.56  E-value=5.8e-15  Score=158.98  Aligned_cols=68  Identities=6%  Similarity=0.083  Sum_probs=52.9

Q ss_pred             ccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCccc-chhhcc
Q 010623          157 RGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN-LRRSLC  230 (506)
Q Consensus       157 ~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~-vR~~l~  230 (506)
                      ..++...+...|.+.+++. |++++.++ |+++..++++   +.+.+.+|.+  ++||.||.|+|.+|. +.+..+
T Consensus       412 g~v~p~~l~~aL~~~a~~~-Gv~i~~~t~V~~l~~~~~~---v~V~t~~G~~--i~Ad~VVlAtG~~s~~l~~~~~  481 (676)
T 3ps9_A          412 GWLCPAELTRNVLELAQQQ-GLQIYYQYQLQNFSRKDDC---WLLNFAGDQQ--ATHSVVVLANGHQISRFSQTST  481 (676)
T ss_dssp             EEECHHHHHHHHHHHHHHT-TCEEEESCCEEEEEEETTE---EEEEETTSCE--EEESEEEECCGGGGGCSTTTTT
T ss_pred             eeeCHHHHHHHHHHHHHhC-CCEEEeCCeeeEEEEeCCe---EEEEECCCCE--EECCEEEECCCcchhccccccC
Confidence            3456778999999999988 68888874 9999998885   4566777763  679999999999986 444443

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.55  E-value=1.5e-13  Score=144.33  Aligned_cols=172  Identities=19%  Similarity=0.252  Sum_probs=100.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc-cccccccchHHHHHHhCch---hHHh------hcccc--
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI-VGELLQPGGYLKLIELGLE---DCVE------QIDAQ--  127 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~-~g~~l~~~~~~~l~~~g~~---~~~~------~~~~~--  127 (506)
                      ++||+|||||++|+++|+.|+++|++|+|+||++.....+ ....+.+.+.+.+++..+.   +.+.      .....  
T Consensus        18 ~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d~~~GtS~~ss~lihgG~ryl~~~~~~l~~e~~~e~~~l~~~ap~l~   97 (561)
T 3da1_A           18 QLDLLVIGGGITGAGIALDAQVRGIQTGLVEMNDFASGTSSRSTKLVHGGLRYLKQFEIKLVAEVGKERAIVYENAPHVT   97 (561)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSSTTCSGGGSSCCEECC---------------CHHHHHHHHHHCTTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCcccCCcCccccchHHHHhcCHHHHHHHHHHHHHHHHhCchhc
Confidence            5999999999999999999999999999999985433221 1222333444444332211   0000      00000  


Q ss_pred             -------eec------------ceEEEEC--Cce-----eee-------ecCCcCCC-C----CcccccccchHHHHHHH
Q 010623          128 -------RVF------------GYALFKD--GNR-----TQI-------SYPLEKFH-S----DVAGRGFHNGRFVQRLR  169 (506)
Q Consensus       128 -------~~~------------~~~~~~~--~~~-----~~~-------~~~~~~~~-~----~~~~~~i~~~~l~~~L~  169 (506)
                             +..            +...++.  +..     ..+       ..|..... .    ......++...+...|.
T Consensus        98 ~~~~~~~p~~~~~~~~~~~~~~g~~~~d~l~~~~~~~~~~~l~~~~~~~~~P~l~~~~~~gg~~~~dg~vd~~~l~~~L~  177 (561)
T 3da1_A           98 TPEWMLLPIFKDGTFGKFSTSLGLKVYDYLADVRKDERRYMLNEKQTLEKEPLLRKENLKGGGIYVEYRTDDARLTLEIM  177 (561)
T ss_dssp             EEEEEEEEECC---------------------------CEEECHHHHHHHCTTSCCTTCCEEEEEEEEECCHHHHHHHHH
T ss_pred             cccceeEeecCCccHHHHHHHhHHHHHHHhhcccCCCCcEEECHHHHHHhCccCChhhceeEEEecCceEcHHHHHHHHH
Confidence                   000            0000000  000     000       01100000 0    00112566778999999


Q ss_pred             HHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEeecCCcc-cchhhccCC
Q 010623          170 EKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFS-NLRRSLCNP  232 (506)
Q Consensus       170 ~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S-~vR~~l~~~  232 (506)
                      +.+.+. |++++++ +|+++..+++++.+|++.+ .+|+..+++||.||+|+|.+| .+++.++..
T Consensus       178 ~~a~~~-G~~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s~~l~~~~g~~  242 (561)
T 3da1_A          178 KEAVAR-GAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWVDTLREKDRSK  242 (561)
T ss_dssp             HHHHHT-TCEEEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGHHHHHHTTTCC
T ss_pred             HHHHHc-CCEEEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcchHHHHHhcCCC
Confidence            999888 6777776 5999999999888888876 356667789999999999999 678877654

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.55  E-value=6.3e-13  Score=133.10  Aligned_cols=197  Identities=12%  Similarity=0.037  Sum_probs=103.8

Q ss_pred             cccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcc-cchhhccCC--C
Q 010623          158 GFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFS-NLRRSLCNP--K  233 (506)
Q Consensus       158 ~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S-~vR~~l~~~--~  233 (506)
                      .++...+...|.+.+++. +++++.+ +|+++..+++++.+|+  +.+|   +++||.||.|+|.+| .+.+.++..  .
T Consensus       145 ~~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~i~~~~~~v~gv~--~~~g---~i~a~~VV~A~G~~s~~l~~~~g~~~~~  218 (382)
T 1y56_B          145 KADPFEATTAFAVKAKEY-GAKLLEYTEVKGFLIENNEIKGVK--TNKG---IIKTGIVVNATNAWANLINAMAGIKTKI  218 (382)
T ss_dssp             EECHHHHHHHHHHHHHHT-TCEEECSCCEEEEEESSSBEEEEE--ETTE---EEECSEEEECCGGGHHHHHHHHTCCSCC
T ss_pred             eECHHHHHHHHHHHHHHC-CCEEECCceEEEEEEECCEEEEEE--ECCc---EEECCEEEECcchhHHHHHHHcCCCcCc
Confidence            456778899999999887 7888887 5999998877655444  5666   477999999999999 566666654  2


Q ss_pred             CCCccceeeEEEeccCCCCCCeeEEEecCC-CcEEEEecCCCeEEEEE-Eec-CCCCC-CCCchHHHHHHHHhcCCCCCh
Q 010623          234 VDVPSCFVGLVLENCNLPFENHGHVVLADP-SPILFYPISSNEVRCLV-DIP-GQKVP-SISNGEMANYLKTVVAPQIPR  309 (506)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~-~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~  309 (506)
                      +..+  ..+.+......+.......++... ...++.|..++ ..+.. ... ..... ..+.+...+.++. +...+| 
T Consensus       219 ~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~g-~~iG~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~p-  293 (382)
T 1y56_B          219 PIEP--YKHQAVITQPIKRGTINPMVISFKYGHAYLTQTFHG-GIIGGIGYEIGPTYDLTPTYEFLREVSYY-FTKIIP-  293 (382)
T ss_dssp             CCEE--EEEEEEEECCCSTTSSCSEEEESTTTTEEEECCSSS-CCEEECSCCBSSCCCCCCCHHHHHHHHHH-HHHHCG-
T ss_pred             CCCe--eEeEEEEEccCCcccCCCeEEecCCCeEEEEEeCCe-EEEecCCCCCCCCCCCCCCHHHHHHHHHH-HHHhCC-
Confidence            2222  222222211111111102233333 46777887766 33332 111 11111 1222222222221 111121 


Q ss_pred             hhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCC-----CCCCCCcchhhHHHHHHHHHHHHHhhh
Q 010623          310 EIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAF-----NMRHPLTGGGMTVALSDIVILRNLLRH  376 (506)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAA-----h~~~P~~GqG~n~ai~Da~~La~~L~~  376 (506)
                      .+..       ......|. ..   .....++..++|...     +...-++|.|+.++..-|..+++.+..
T Consensus       294 ~l~~-------~~~~~~~~-g~---r~~t~d~~p~ig~~~~~~~~~~~~G~~g~G~~~a~~~g~~la~~i~~  354 (382)
T 1y56_B          294 ALKN-------LLILRTWA-GY---YAKTPDSNPAIGRIEELNDYYIAAGFSGHGFMMAPAVGEMVAELITK  354 (382)
T ss_dssp             GGGG-------SEEEEEEE-EE---EEECTTSCCEEEEESSSBTEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CcCC-------CCceEEEE-ec---cccCCCCCcEeccCCCCCCEEEEEecCcchHhhhHHHHHHHHHHHhC
Confidence            1110       00111111 00   011123445566543     223457889999999999999988864

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.54  E-value=3.7e-13  Score=133.85  Aligned_cols=72  Identities=14%  Similarity=0.062  Sum_probs=55.6

Q ss_pred             cccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcc-cchhhc-cCC
Q 010623          158 GFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFS-NLRRSL-CNP  232 (506)
Q Consensus       158 ~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S-~vR~~l-~~~  232 (506)
                      .++...+...|.+.+++. |++++.+ +|+++..+++++  +.+.+.+|+..+++||.||.|+|.+| .+.+.+ +.+
T Consensus       146 ~~~~~~~~~~l~~~~~~~-Gv~i~~~~~v~~i~~~~~~~--~~v~~~~g~~~~~~a~~VV~A~G~~s~~l~~~~~g~~  220 (369)
T 3dme_A          146 IVDSHALMLAYQGDAESD-GAQLVFHTPLIAGRVRPEGG--FELDFGGAEPMTLSCRVLINAAGLHAPGLARRIEGIP  220 (369)
T ss_dssp             EECHHHHHHHHHHHHHHT-TCEEECSCCEEEEEECTTSS--EEEEECTTSCEEEEEEEEEECCGGGHHHHHHTEETSC
T ss_pred             EECHHHHHHHHHHHHHHC-CCEEECCCEEEEEEEcCCce--EEEEECCCceeEEEeCEEEECCCcchHHHHHHhcCCC
Confidence            466778999999999988 7888877 599999876642  33456677555688999999999999 566666 654

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.52  E-value=8.6e-13  Score=125.28  Aligned_cols=38  Identities=24%  Similarity=0.573  Sum_probs=34.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP   96 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~   96 (506)
                      |++||+||||||+||+||+.|+++|++|+|+||.+.+.
T Consensus         1 Mt~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~G   38 (336)
T 3kkj_A            1 MTVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSG   38 (336)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence            45899999999999999999999999999999987654

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=99.52  E-value=2.1e-13  Score=132.16  Aligned_cols=141  Identities=23%  Similarity=0.277  Sum_probs=97.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCCCCccc-------ccccccchHHHHHHhCchhHHhhccccee
Q 010623           59 FDADVIVVGAGVAGAALANTLAKD--GRRVHVIERDLSEPDRIV-------GELLQPGGYLKLIELGLEDCVEQIDAQRV  129 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~~~~~~~~-------g~~l~~~~~~~l~~~g~~~~~~~~~~~~~  129 (506)
                      .++||+|||||++|+++|+.|+++  |++|+|+|+.+.......       ...+.+...+.|+++|+.-.         
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~---------  148 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYE---------  148 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCE---------
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCccc---------
Confidence            358999999999999999999997  999999999865432111       11123444566666665310         


Q ss_pred             cceEEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeC----------------
Q 010623          130 FGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEK----------------  192 (506)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~----------------  192 (506)
                            ..+..               ....+..++.+.|.+.+.+.+++++++++ ++++..++                
T Consensus       149 ------~~G~~---------------~~~~~~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~  207 (344)
T 3jsk_A          149 ------DEGDY---------------VVVKHAALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAED  207 (344)
T ss_dssp             ------ECSSE---------------EEESCHHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC---------------
T ss_pred             ------ccCCe---------------EEEecHHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCccccccccccccccc
Confidence                  00100               00113456778999999887799999985 89988765                


Q ss_pred             -C--eEEEEEEEe----CCc------cEEEEEcCeEEeecCCcccchhhc
Q 010623          193 -G--TIKGVQYKT----KAG------EELTAYAPLTIVCDGCFSNLRRSL  229 (506)
Q Consensus       193 -~--~v~~v~v~~----~~G------~~~~i~a~~vV~AdG~~S~vR~~l  229 (506)
                       +  ++.+|.+..    .+|      +..+++|++||+|||..|++++.+
T Consensus       208 ~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~Ak~VV~ATG~~s~v~~~~  257 (344)
T 3jsk_A          208 EAKVRIAGVVTNWTLVSMHHDDQSAMDPNTINAPVIISTTGHDGPFGAFS  257 (344)
T ss_dssp             -CCEEEEEEEEEEHHHHTTSSSSSCCBCEEEECSEEEECCCSSSSSSCHH
T ss_pred             CCCceEeEEEeeeeeeeccCCcccccCceEEEcCEEEECCCCCchhhHHH
Confidence             3  777877642    233      335789999999999999976654

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.51  E-value=1.2e-14  Score=156.80  Aligned_cols=69  Identities=9%  Similarity=-0.027  Sum_probs=50.9

Q ss_pred             ccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCccc-chhhcc
Q 010623          157 RGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN-LRRSLC  230 (506)
Q Consensus       157 ~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~-vR~~l~  230 (506)
                      ..++...+...|.+.+.+. |++++.+ +|+++..++++   +.+.+.+|+ .+++||.||.|+|.+|. +.+.++
T Consensus       407 g~v~p~~l~~aL~~~a~~~-Gv~i~~~t~V~~l~~~~~~---v~V~t~~G~-~~i~Ad~VVlAtG~~s~~l~~~~~  477 (689)
T 3pvc_A          407 GWLCPSDLTHALMMLAQQN-GMTCHYQHELQRLKRIDSQ---WQLTFGQSQ-AAKHHATVILATGHRLPEWEQTHH  477 (689)
T ss_dssp             EEECHHHHHHHHHHHHHHT-TCEEEESCCEEEEEECSSS---EEEEEC-CC-CCEEESEEEECCGGGTTCSTTTTT
T ss_pred             eEECHHHHHHHHHHHHHhC-CCEEEeCCeEeEEEEeCCe---EEEEeCCCc-EEEECCEEEECCCcchhccccccC
Confidence            3456678999999999887 6788877 49999988775   445566664 13679999999999985 444443

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.50  E-value=1.1e-13  Score=145.82  Aligned_cols=165  Identities=18%  Similarity=0.187  Sum_probs=106.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc--cccccccchHHHHHHhCchhHHhhcccc--------
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI--VGELLQPGGYLKLIELGLEDCVEQIDAQ--------  127 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~--~g~~l~~~~~~~l~~~g~~~~~~~~~~~--------  127 (506)
                      +.++||+|||||++||++|+.|+++|.+|+|+||.+......  .+..++......++.+|+.+........        
T Consensus       119 ~~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~  198 (566)
T 1qo8_A          119 SETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQ  198 (566)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCC
Confidence            356899999999999999999999999999999987654322  2233433333444555543222111000        


Q ss_pred             --------------------eecceEEEECCceeeeec-CCcCCCC--CcccccccchHHHHHHHHHHHcCCCEEEEece
Q 010623          128 --------------------RVFGYALFKDGNRTQISY-PLEKFHS--DVAGRGFHNGRFVQRLREKAASLPNVRLEQGT  184 (506)
Q Consensus       128 --------------------~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~  184 (506)
                                          ...+..+.      .... .......  .+....+....+...|.+.+.+. +++++.++
T Consensus       199 ~~~~~~~~~~~~~~~~i~~l~~~Gv~~~------~~~~~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~-gv~i~~~~  271 (566)
T 1qo8_A          199 NDIKLVTILAEQSADGVQWLESLGANLD------DLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQ-GIDTRLNS  271 (566)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCCCC------EEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHT-TCCEECSE
T ss_pred             CCHHHHHHHHhccHHHHHHHHhcCCccc------cccccCCCCCCceeecCCCCCCHHHHHHHHHHHHHhc-CCEEEeCC
Confidence                                00010000      0000 0000000  00011134567889999999887 78888885


Q ss_pred             -EEEEEeeC-CeEEEEEEEeCCccEEEEEcCeEEeecCCcccchhhc
Q 010623          185 -VTSLLEEK-GTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSL  229 (506)
Q Consensus       185 -v~~~~~~~-~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~~l  229 (506)
                       |+++..++ +++.+|++.+.+|+..+++||.||.|+|++|..|+++
T Consensus       272 ~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~~~~~~  318 (566)
T 1qo8_A          272 RVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGMNKEMI  318 (566)
T ss_dssp             EEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTTCHHHH
T ss_pred             EEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCcccCHHHH
Confidence             99999887 8888898887788767789999999999999887655

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.49  E-value=4.9e-13  Score=128.21  Aligned_cols=140  Identities=23%  Similarity=0.264  Sum_probs=95.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCCcc--ccc-----ccccchHHHHHHhCchhHHhhcccceecc
Q 010623           60 DADVIVVGAGVAGAALANTLAKD-GRRVHVIERDLSEPDRI--VGE-----LLQPGGYLKLIELGLEDCVEQIDAQRVFG  131 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~-G~~v~vvE~~~~~~~~~--~g~-----~l~~~~~~~l~~~g~~~~~~~~~~~~~~~  131 (506)
                      ++||+|||||++|+++|+.|+++ |++|+|+||.+......  .+.     .+.....+.++++|+.-            
T Consensus        39 ~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~------------  106 (284)
T 1rp0_A           39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAY------------  106 (284)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCC------------
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCc------------
Confidence            48999999999999999999997 99999999986543211  110     11122334444444320            


Q ss_pred             eEEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeC-------
Q 010623          132 YALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTK-------  203 (506)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~-------  203 (506)
                         ...+..               ....+...+...|.+.+.+..+++++.++ |+++..+++++.+|.+...       
T Consensus       107 ---~~~~~~---------------~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~  168 (284)
T 1rp0_A          107 ---DEQDTY---------------VVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHH  168 (284)
T ss_dssp             ---EECSSE---------------EEESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTT
T ss_pred             ---ccCCCE---------------EEecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccC
Confidence               000000               00124566778888888775589999885 9999988888878877521       


Q ss_pred             C---ccEEEEEcCeEEeecCCcccchhhc
Q 010623          204 A---GEELTAYAPLTIVCDGCFSNLRRSL  229 (506)
Q Consensus       204 ~---G~~~~i~a~~vV~AdG~~S~vR~~l  229 (506)
                      +   |+..+++||.||+|+|.+|.++...
T Consensus       169 ~g~~g~~~~i~ad~VV~AtG~~s~~~~~~  197 (284)
T 1rp0_A          169 TQSCMDPNVMEAKIVVSSCGHDGPFGATG  197 (284)
T ss_dssp             TSSCCCCEEEEEEEEEECCCSSSTTTTHH
T ss_pred             ccccCceEEEECCEEEECCCCchHHHHHH
Confidence            2   3445688999999999999887654

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.48  E-value=2e-12  Score=129.67  Aligned_cols=164  Identities=21%  Similarity=0.191  Sum_probs=93.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC--Cccc--cccccc------chH-HHHHHhCchhHHhhccc--
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP--DRIV--GELLQP------GGY-LKLIELGLEDCVEQIDA--  126 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~--~~~~--g~~l~~------~~~-~~l~~~g~~~~~~~~~~--  126 (506)
                      ++||+|||||++|+++|+.|+++|++|+|+|+.....  ..+.  +..+.+      ... ...+....++.+.+...  
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~   82 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVPLALRSQELWYELEKETHHK   82 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSCSSSSSCSSEEEECSSCTTCGGGHHHHHHHHHHHHHHHHHCSSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHhCCc
Confidence            5899999999999999999999999999999986433  1111  111111      111 11222233333322100  


Q ss_pred             -ceecceEEEECC-c------------------------eeeeecCCcCCCC------CcccccccchHHHHHHHHHHHc
Q 010623          127 -QRVFGYALFKDG-N------------------------RTQISYPLEKFHS------DVAGRGFHNGRFVQRLREKAAS  174 (506)
Q Consensus       127 -~~~~~~~~~~~~-~------------------------~~~~~~~~~~~~~------~~~~~~i~~~~l~~~L~~~~~~  174 (506)
                       ....+....... .                        .....+|.-....      .+....++...+...|.+.+++
T Consensus        83 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  162 (389)
T 2gf3_A           83 IFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAEA  162 (389)
T ss_dssp             CEECCCEEEEEETTCCHHHHHHHHHHHHTTCCCEEEETHHHHHHSTTCCCCTTEEEEEETTCEEEEHHHHHHHHHHHHHH
T ss_pred             ceeecceEEEcCCCchHHHHHHHHHHHHcCCCcEEcCHHHHHHhCCCcccCCCceEEEeCCCcEEeHHHHHHHHHHHHHH
Confidence             011111111110 0                        0000011000000      0112345667888999999998


Q ss_pred             CCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCccc-chhhcc
Q 010623          175 LPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN-LRRSLC  230 (506)
Q Consensus       175 ~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~-vR~~l~  230 (506)
                      . +++++.+ +|+++..++++   +.+.+.+|   +++||.||.|+|.+|. +.+.++
T Consensus       163 ~-Gv~i~~~~~v~~i~~~~~~---~~v~~~~g---~~~a~~vV~A~G~~~~~l~~~~g  213 (389)
T 2gf3_A          163 R-GAKVLTHTRVEDFDISPDS---VKIETANG---SYTADKLIVSMGAWNSKLLSKLN  213 (389)
T ss_dssp             T-TCEEECSCCEEEEEECSSC---EEEEETTE---EEEEEEEEECCGGGHHHHGGGGT
T ss_pred             C-CCEEEcCcEEEEEEecCCe---EEEEeCCC---EEEeCEEEEecCccHHHHhhhhc
Confidence            8 7888877 59999887664   34555555   3779999999999985 445454

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.48  E-value=1.1e-13  Score=146.06  Aligned_cols=165  Identities=21%  Similarity=0.194  Sum_probs=103.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc--cccccccchHHHHHHhCchhHHhhcccc---------
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI--VGELLQPGGYLKLIELGLEDCVEQIDAQ---------  127 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~--~g~~l~~~~~~~l~~~g~~~~~~~~~~~---------  127 (506)
                      .++||+|||||++||++|+.|+++|.+|+|+||.+......  .+..++.......+++|+.+....+...         
T Consensus       125 ~~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~  204 (571)
T 1y0p_A          125 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIN  204 (571)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCCC
Confidence            46899999999999999999999999999999987554321  1222333333344455543222111000         


Q ss_pred             -------------------eecceEEEECCceeeeecCCcCCCCC--cccccccchHHHHHHHHHHHcCCCEEEEece-E
Q 010623          128 -------------------RVFGYALFKDGNRTQISYPLEKFHSD--VAGRGFHNGRFVQRLREKAASLPNVRLEQGT-V  185 (506)
Q Consensus       128 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v  185 (506)
                                         ...+..+..     ............  +.........+...|.+.+.+. +++++.++ |
T Consensus       205 ~~~~~~~~~~~~~~~~~~l~~~Gv~~~~-----~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~-gv~i~~~~~v  278 (571)
T 1y0p_A          205 DPALVKVLSSHSKDSVDWMTAMGADLTD-----VGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKR-NIDLRMNTRG  278 (571)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCCCE-----EECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHT-TCEEESSEEE
T ss_pred             CHHHHHHHHHccHHHHHHHHhcCCCCcc-----CcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhc-CCEEEeCCEe
Confidence                               000000000     000000000000  0000123457889999999887 78888885 9


Q ss_pred             EEEEeeC-CeEEEEEEEeCCccEEEEEcCeEEeecCCcccchhhc
Q 010623          186 TSLLEEK-GTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSL  229 (506)
Q Consensus       186 ~~~~~~~-~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~~l  229 (506)
                      +++..++ +++.+|++.+.+|+..+++||.||.|+|.+|..++++
T Consensus       279 ~~l~~~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~~n~~~~  323 (571)
T 1y0p_A          279 IEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFAKNNERV  323 (571)
T ss_dssp             EEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCTTCHHHH
T ss_pred             eEeEEcCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCcccCHHHH
Confidence            9999876 8888898877678767789999999999999866543

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.47  E-value=3.1e-12  Score=128.82  Aligned_cols=167  Identities=24%  Similarity=0.198  Sum_probs=95.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccc----cccccc-----h-HHHHHHhCchhHHhhccc--
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVG----ELLQPG-----G-YLKLIELGLEDCVEQIDA--  126 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g----~~l~~~-----~-~~~l~~~g~~~~~~~~~~--  126 (506)
                      .++||+|||||++|+++|+.|+++|++|+|+||.+.......+    ..+...     . ....+.+..++.+.+...  
T Consensus         3 ~~~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~~~~~gas~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (397)
T 2oln_A            3 ESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFNENGGTSGAERHWRLQYTQEDLFRLTLETLPLWRALESRCERR   82 (397)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTCSSSSCCSSEEEECSCCSSHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCCCCCcCeEEEeccCcchhhhHHHHHHHHHHHHHHHhCcc
Confidence            3589999999999999999999999999999998654311111    111100     0 011222333333321100  


Q ss_pred             -ceecceE-EEECCc-------------------ee-e-------eecCCcCCCC------CcccccccchHHHHHHHHH
Q 010623          127 -QRVFGYA-LFKDGN-------------------RT-Q-------ISYPLEKFHS------DVAGRGFHNGRFVQRLREK  171 (506)
Q Consensus       127 -~~~~~~~-~~~~~~-------------------~~-~-------~~~~~~~~~~------~~~~~~i~~~~l~~~L~~~  171 (506)
                       ....+.. +.....                   .. .       ..++......      .+.+..++...+...|.+.
T Consensus        83 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~  162 (397)
T 2oln_A           83 LIHEIGSLWFGDTDVVTNEGQISGTAAMMDKLSVRYEWLKATDIERRFGFRGLPRDYEGFLQPDGGTIDVRGTLAALFTL  162 (397)
T ss_dssp             CEECCCEEEEECSSCCBTTBCHHHHHHHHHHTTCCCEEEEHHHHHHHHCCCSCCTTCEEEEETTCEEEEHHHHHHHHHHH
T ss_pred             HHHHCCcEEEcCCCccchhHHHHHHHHHHHHcCCCceecCHHHHHhhCcCccCCCceeEEEcCCCCEEcHHHHHHHHHHH
Confidence             0111111 111110                   00 0       0001000000      0112245566788899999


Q ss_pred             HHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcc-cchhhccCC
Q 010623          172 AASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFS-NLRRSLCNP  232 (506)
Q Consensus       172 ~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S-~vR~~l~~~  232 (506)
                      +.+. +++++.+ +|+++..++++   +++.+.+|   +++||.||+|+|.+| .+++.++..
T Consensus       163 a~~~-Gv~i~~~~~V~~i~~~~~~---v~v~t~~g---~i~a~~VV~A~G~~s~~l~~~~g~~  218 (397)
T 2oln_A          163 AQAA-GATLRAGETVTELVPDADG---VSVTTDRG---TYRAGKVVLACGPYTNDLLEPLGAR  218 (397)
T ss_dssp             HHHT-TCEEEESCCEEEEEEETTE---EEEEESSC---EEEEEEEEECCGGGHHHHHGGGTCC
T ss_pred             HHHc-CCEEECCCEEEEEEEcCCe---EEEEECCC---EEEcCEEEEcCCcChHHHhhhcCCC
Confidence            8887 6888877 59999988774   44555555   377999999999995 577777653

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.47  E-value=6.5e-13  Score=132.77  Aligned_cols=69  Identities=9%  Similarity=0.058  Sum_probs=54.2

Q ss_pred             ccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcc-cchhhccCC
Q 010623          157 RGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFS-NLRRSLCNP  232 (506)
Q Consensus       157 ~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S-~vR~~l~~~  232 (506)
                      ..++...+...|.+.+++. |++++.+ +|+++..++++   +.+.+.+|   +++||.||.|+|.+| .+.+.++..
T Consensus       149 ~~~~~~~~~~~l~~~a~~~-Gv~i~~~~~V~~i~~~~~~---~~V~t~~g---~i~a~~VV~A~G~~s~~l~~~~g~~  219 (381)
T 3nyc_A          149 ADIDTDALHQGYLRGIRRN-QGQVLCNHEALEIRRVDGA---WEVRCDAG---SYRAAVLVNAAGAWCDAIAGLAGVR  219 (381)
T ss_dssp             EEECHHHHHHHHHHHHHHT-TCEEESSCCCCEEEEETTE---EEEECSSE---EEEESEEEECCGGGHHHHHHHHTCC
T ss_pred             ceECHHHHHHHHHHHHHHC-CCEEEcCCEEEEEEEeCCe---EEEEeCCC---EEEcCEEEECCChhHHHHHHHhCCC
Confidence            3466778999999999988 7888876 59999988874   45556666   477999999999999 466666654

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.42  E-value=5.7e-13  Score=138.58  Aligned_cols=64  Identities=27%  Similarity=0.405  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHcCCCEEEEece-EEEEEee-CCeEEEEEEEeCCccEEEEEcC-eEEeecCCcccchhh
Q 010623          163 RFVQRLREKAASLPNVRLEQGT-VTSLLEE-KGTIKGVQYKTKAGEELTAYAP-LTIVCDGCFSNLRRS  228 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~-~~~v~~v~v~~~~G~~~~i~a~-~vV~AdG~~S~vR~~  228 (506)
                      .+...|.+.+++. +++++.++ |+++..+ ++++++|.+.. +|+..+++|+ .||.|+|++|..+++
T Consensus       203 ~l~~~L~~~~~~~-Gv~i~~~t~v~~L~~~~~g~v~GV~~~~-~g~~~~i~A~k~VVlAtGG~~~n~~m  269 (510)
T 4at0_A          203 MLMKPLVETAEKL-GVRAEYDMRVQTLVTDDTGRVVGIVAKQ-YGKEVAVRARRGVVLATGSFAYNDKM  269 (510)
T ss_dssp             HHHHHHHHHHHHT-TCEEECSEEEEEEEECTTCCEEEEEEEE-TTEEEEEEEEEEEEECCCCCTTCHHH
T ss_pred             HHHHHHHHHHHHc-CCEEEecCEeEEEEECCCCcEEEEEEEE-CCcEEEEEeCCeEEEeCCChhhCHHH
Confidence            7889999999888 78898885 9999988 68899998876 4555679995 999999999964433

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.41  E-value=1.4e-12  Score=131.51  Aligned_cols=143  Identities=23%  Similarity=0.239  Sum_probs=88.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc----cccc------cc---------cchHHHHHHhCch
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI----VGEL------LQ---------PGGYLKLIELGLE  118 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~----~g~~------l~---------~~~~~~l~~~g~~  118 (506)
                      +.++||+|||||++|+++|+.|+++|++|+|+||.+....+.    .+..      ..         ......+..+...
T Consensus        25 ~~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~  104 (417)
T 3v76_A           25 AEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQ  104 (417)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHH
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHH
Confidence            346899999999999999999999999999999987543211    0000      00         0011223333332


Q ss_pred             hHHhhcccceecceEEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEE
Q 010623          119 DCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKG  197 (506)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~  197 (506)
                      +.+.....   .+........             ...........+.+.|.+.+++. +++++.++ |+++..++++   
T Consensus       105 ~~~~~~~~---~Gi~~~~~~~-------------g~~~~~~~~~~l~~~L~~~l~~~-Gv~i~~~~~V~~i~~~~~~---  164 (417)
T 3v76_A          105 DFVALVER---HGIGWHEKTL-------------GQLFCDHSAKDIIRMLMAEMKEA-GVQLRLETSIGEVERTASG---  164 (417)
T ss_dssp             HHHHHHHH---TTCCEEECST-------------TEEEESSCHHHHHHHHHHHHHHH-TCEEECSCCEEEEEEETTE---
T ss_pred             HHHHHHHH---cCCCcEEeeC-------------CEEeeCCCHHHHHHHHHHHHHHC-CCEEEECCEEEEEEEeCCE---
Confidence            22211110   1111111000             00000234557888999998887 78888875 9999988774   


Q ss_pred             EEEEeCCccEEEEEcCeEEeecCCcc
Q 010623          198 VQYKTKAGEELTAYAPLTIVCDGCFS  223 (506)
Q Consensus       198 v~v~~~~G~~~~i~a~~vV~AdG~~S  223 (506)
                      +.+.+.+|   +++||.||+|+|++|
T Consensus       165 ~~V~~~~g---~i~ad~VIlAtG~~S  187 (417)
T 3v76_A          165 FRVTTSAG---TVDAASLVVASGGKS  187 (417)
T ss_dssp             EEEEETTE---EEEESEEEECCCCSS
T ss_pred             EEEEECCc---EEEeeEEEECCCCcc
Confidence            55667777   477999999999999

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.40  E-value=3.2e-12  Score=118.70  Aligned_cols=131  Identities=29%  Similarity=0.303  Sum_probs=89.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      ++||+|||||++|+.+|+.|++.|.+|+|+|+....    .|...++..    ..+.....+.++.           +  
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~----~G~~~~~~~----~~~~~~~~~~~~~-----------d--   61 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDA----VMMPFLPPK----PPFPPGSLLERAY-----------D--   61 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGG----TTCCSSCCC----SCCCTTCHHHHHC-----------C--
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCc----CCcccCccc----cccchhhHHhhhc-----------c--
Confidence            589999999999999999999999999999997321    111111100    0000000000000           0  


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD  219 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad  219 (506)
                                 ...+     ++..+...|.+.+++.++++++.++|+++..+++++.+|.  ..+|+  +++||+||.|+
T Consensus        62 -----------~~g~-----~~~~~~~~l~~~~~~~~gv~i~~~~v~~i~~~~~~v~~v~--~~~g~--~i~a~~VV~A~  121 (232)
T 2cul_A           62 -----------PKDE-----RVWAFHARAKYLLEGLRPLHLFQATATGLLLEGNRVVGVR--TWEGP--PARGEKVVLAV  121 (232)
T ss_dssp             -----------TTCC-----CHHHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEE--ETTSC--CEECSEEEECC
T ss_pred             -----------CCCC-----CHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEeCCEEEEEE--ECCCC--EEECCEEEECC
Confidence                       0000     5667888999999887689888767999998888655444  56775  46799999999


Q ss_pred             CCcccchhhccC
Q 010623          220 GCFSNLRRSLCN  231 (506)
Q Consensus       220 G~~S~vR~~l~~  231 (506)
                      |.+|..+..++.
T Consensus       122 G~~s~~~~~~G~  133 (232)
T 2cul_A          122 GSFLGARLFLGG  133 (232)
T ss_dssp             TTCSSCEEEETT
T ss_pred             CCChhhceecCC
Confidence            999998876654

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=99.39  E-value=3.5e-12  Score=122.89  Aligned_cols=142  Identities=26%  Similarity=0.303  Sum_probs=93.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCCCCccc-c------cccccchHHHHHHhCchhHHhhccccee
Q 010623           59 FDADVIVVGAGVAGAALANTLAKD--GRRVHVIERDLSEPDRIV-G------ELLQPGGYLKLIELGLEDCVEQIDAQRV  129 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~~~~~~~~-g------~~l~~~~~~~l~~~g~~~~~~~~~~~~~  129 (506)
                      .++||+||||||+|+++|+.|+++  |++|+|+|+.+....... +      ..+.+...+.|+++|+.-.         
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~---------  134 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYE---------  134 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCE---------
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccc---------
Confidence            357999999999999999999998  999999999865432111 0      1122233444544443310         


Q ss_pred             cceEEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeC----C--eEEEEEEEe
Q 010623          130 FGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEK----G--TIKGVQYKT  202 (506)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~----~--~v~~v~v~~  202 (506)
                            ..+.               .....+...+...|.+.+.+.++++++.+. |+++..++    +  ++.||.+..
T Consensus       135 ------~~g~---------------~~~~~~~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~  193 (326)
T 2gjc_A          135 ------DEGD---------------YVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNW  193 (326)
T ss_dssp             ------ECSS---------------EEEESCHHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEE
T ss_pred             ------cCCC---------------eEEEcchHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecc
Confidence                  0000               000113456788899999887799999885 99998763    4  788887742


Q ss_pred             ----CCc------cEEEEEc---------------CeEEeecCCcccchhhcc
Q 010623          203 ----KAG------EELTAYA---------------PLTIVCDGCFSNLRRSLC  230 (506)
Q Consensus       203 ----~~G------~~~~i~a---------------~~vV~AdG~~S~vR~~l~  230 (506)
                          .+|      +..+++|               ++||+|||..|++.+.+.
T Consensus       194 ~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~~~~~~VV~ATG~~~~~~~~~~  246 (326)
T 2gjc_A          194 TLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCA  246 (326)
T ss_dssp             HHHHTC---CCCCCCEEEEESCCCSSSCCCSSTTCCEEEECCCCC--CCSHHH
T ss_pred             eeecccccceeccCceEEEEeeccccccccccccCCEEEECcCCCchHHHHHH
Confidence                233      3356889               999999999998877664

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.38  E-value=1.8e-11  Score=128.72  Aligned_cols=72  Identities=24%  Similarity=0.212  Sum_probs=56.5

Q ss_pred             ccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeC-CccEEEEEcCeEEeecCCcc-cchhhccC
Q 010623          159 FHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTK-AGEELTAYAPLTIVCDGCFS-NLRRSLCN  231 (506)
Q Consensus       159 i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~-~G~~~~i~a~~vV~AdG~~S-~vR~~l~~  231 (506)
                      ++...+...|.+.+.+. |+++.++ +|+++..+++++++|++.+. +|+..+++||.||+|+|.+| .+++..+.
T Consensus       185 v~~~~l~~~l~~~a~~~-Ga~i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws~~l~~~~g~  259 (571)
T 2rgh_A          185 NNDARLVIDNIKKAAED-GAYLVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPWVDKVRNLNFT  259 (571)
T ss_dssp             CCHHHHHHHHHHHHHHT-TCEEESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGGHHHHHTTCCS
T ss_pred             EchHHHHHHHHHHHHHc-CCeEEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChhHHHHHHhhcc
Confidence            45667888888888887 6788777 59999998888888887763 56555789999999999998 46665554

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.37  E-value=6.2e-12  Score=128.33  Aligned_cols=63  Identities=24%  Similarity=0.332  Sum_probs=49.7

Q ss_pred             ccccchHHHHHHHHHHHcCCCEEEEec----eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCccc
Q 010623          157 RGFHNGRFVQRLREKAASLPNVRLEQG----TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN  224 (506)
Q Consensus       157 ~~i~~~~l~~~L~~~~~~~~~v~i~~~----~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~  224 (506)
                      ..++...+...|.+.+++. |++++.+    +|+++..+++++.+|+  +.+|+  +++||.||.|+|++|.
T Consensus       156 g~~~~~~~~~~L~~~a~~~-Gv~i~~~t~~~~V~~i~~~~~~v~gV~--t~~G~--~i~Ad~VV~AtG~~s~  222 (438)
T 3dje_A          156 GWAHARNALVAAAREAQRM-GVKFVTGTPQGRVVTLIFENNDVKGAV--TADGK--IWRAERTFLCAGASAG  222 (438)
T ss_dssp             EEECHHHHHHHHHHHHHHT-TCEEEESTTTTCEEEEEEETTEEEEEE--ETTTE--EEECSEEEECCGGGGG
T ss_pred             EEecHHHHHHHHHHHHHhc-CCEEEeCCcCceEEEEEecCCeEEEEE--ECCCC--EEECCEEEECCCCChh
Confidence            3445568899999999988 6777766    6999998888765554  56775  4679999999999985

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.35  E-value=5.4e-12  Score=129.04  Aligned_cols=153  Identities=20%  Similarity=0.252  Sum_probs=93.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc--cccc---c-ccchH-HHHHHhCchhH-----Hhhccc
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI--VGEL---L-QPGGY-LKLIELGLEDC-----VEQIDA  126 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~--~g~~---l-~~~~~-~~l~~~g~~~~-----~~~~~~  126 (506)
                      +++||+|||||++|+++|+.|+++|.+|+|+||.+......  .+..   + +.... ..+..++....     +.....
T Consensus        25 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (447)
T 2i0z_A           25 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNN  104 (447)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCH
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCH
Confidence            46899999999999999999999999999999986543211  0000   0 00001 11121111100     000000


Q ss_pred             c------eecceEEEECCceeeeecCCcCCCCCcccccc----cchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeE
Q 010623          127 Q------RVFGYALFKDGNRTQISYPLEKFHSDVAGRGF----HNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTI  195 (506)
Q Consensus       127 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v  195 (506)
                      .      ...+..+..                ...+..+    ....+.+.|.+.+++. +++++.++ |+++..+++++
T Consensus       105 ~~~~~~~~~~G~~~~~----------------~~~g~~~p~~~~~~~l~~~L~~~~~~~-GV~i~~~~~V~~i~~~~~~v  167 (447)
T 2i0z_A          105 EDIITFFENLGVKLKE----------------EDHGRMFPVSNKAQSVVDALLTRLKDL-GVKIRTNTPVETIEYENGQT  167 (447)
T ss_dssp             HHHHHHHHHTTCCEEE----------------CGGGEEEETTCCHHHHHHHHHHHHHHT-TCEEECSCCEEEEEEETTEE
T ss_pred             HHHHHHHHhcCCceEE----------------eeCCEEECCCCCHHHHHHHHHHHHHHC-CCEEEeCcEEEEEEecCCcE
Confidence            0      000111100                0011111    2457888999998886 78888875 99999887765


Q ss_pred             EEEEEEeCCccEEEEEcCeEEeecCCcc-----------cchhhccCC
Q 010623          196 KGVQYKTKAGEELTAYAPLTIVCDGCFS-----------NLRRSLCNP  232 (506)
Q Consensus       196 ~~v~v~~~~G~~~~i~a~~vV~AdG~~S-----------~vR~~l~~~  232 (506)
                      .+|+  ..+|+  +++||.||+|||++|           .+++.++..
T Consensus       168 ~~V~--~~~G~--~i~Ad~VVlAtGg~s~~~~g~tG~g~~la~~~G~~  211 (447)
T 2i0z_A          168 KAVI--LQTGE--VLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGHT  211 (447)
T ss_dssp             EEEE--ETTCC--EEECSCEEECCCCSSSGGGSCSSHHHHHHHHTTCC
T ss_pred             EEEE--ECCCC--EEECCEEEECCCCCcCCCCCCCcHHHHHHHHCCCC
Confidence            5554  45675  477999999999999           777777764

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.32  E-value=1.6e-11  Score=128.41  Aligned_cols=154  Identities=18%  Similarity=0.201  Sum_probs=95.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC-CCCcccccc---cc-cchHHHHHHhCc-hhHHhhcccceecce
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS-EPDRIVGEL---LQ-PGGYLKLIELGL-EDCVEQIDAQRVFGY  132 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~-~~~~~~g~~---l~-~~~~~~l~~~g~-~~~~~~~~~~~~~~~  132 (506)
                      .++||+|||||++|+++|+.|++.|.+|+|+|+++. .....+...   +. ....+.++.+|- ......     ..+.
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d-----~~gi  101 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAID-----QAGI  101 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHH-----HHEE
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhh-----hccc
Confidence            369999999999999999999999999999999742 222122111   11 011222333331 111100     0111


Q ss_pred             EE--EECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEE
Q 010623          133 AL--FKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTA  210 (506)
Q Consensus       133 ~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i  210 (506)
                      .+  ......     +    ........+++..+...|.+.+.+.++++++.++|+++..+++++.+|.  ..+|.  ++
T Consensus       102 ~f~~l~~~kg-----p----av~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~~~~V~~L~~e~g~V~GV~--t~dG~--~I  168 (651)
T 3ces_A          102 QFRILNASKG-----P----AVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAV--TQMGL--KF  168 (651)
T ss_dssp             EEEEESTTSC-----G----GGCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEESSSBEEEEE--ETTSE--EE
T ss_pred             chhhhhcccC-----c----ccccchhhCCHHHHHHHHHHHHHhCCCCEEEEEEEEEEEecCCEEEEEE--ECCCC--EE
Confidence            11  110000     0    0001113467778889999999885689997778999988878776665  45674  47


Q ss_pred             EcCeEEeecCCcccchhhcc
Q 010623          211 YAPLTIVCDGCFSNLRRSLC  230 (506)
Q Consensus       211 ~a~~vV~AdG~~S~vR~~l~  230 (506)
                      +||.||+|||.+|..+...+
T Consensus       169 ~Ad~VVLATGt~s~~~~i~G  188 (651)
T 3ces_A          169 RAKAVVLTVGTFLDGKIHIG  188 (651)
T ss_dssp             EEEEEEECCSTTTCCEEECC
T ss_pred             ECCEEEEcCCCCccCccccC
Confidence            79999999999998776543

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.32  E-value=1.6e-11  Score=127.48  Aligned_cols=149  Identities=21%  Similarity=0.236  Sum_probs=86.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHH-----hhcccceecce
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCV-----EQIDAQRVFGY  132 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~-----~~~~~~~~~~~  132 (506)
                      ..++||+||||||+|+++|+.|++.|++|+|+|+.+....+.            +...+.+...     .... ....+.
T Consensus       105 ~~~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~------------~~~~g~w~~~~~~~~~~i~-~g~gGa  171 (549)
T 3nlc_A          105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERT------------KDTFGFWRKRTLNPESNVQ-FGEGGA  171 (549)
T ss_dssp             TCCCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHH------------HHHHHHHHHCCCCTTSSSS-SSTTGG
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccc------------cchhcccccccccccccce-eccCCc
Confidence            346899999999999999999999999999999985421110            0000000000     0000 000000


Q ss_pred             EEEECCceee----------------eecCCc---CCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeC
Q 010623          133 ALFKDGNRTQ----------------ISYPLE---KFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEK  192 (506)
Q Consensus       133 ~~~~~~~~~~----------------~~~~~~---~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~  192 (506)
                      ..+.+++...                ..+...   .....+.........+.+.|.+.+.+. ++++++++ |+++..++
T Consensus       172 g~~sdgkl~~~i~~~~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~-Gv~I~~~t~V~~I~~~~  250 (549)
T 3nlc_A          172 GTFSDGKLYSQVKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIEL-GGEIRFSTRVDDLHMED  250 (549)
T ss_dssp             GTTSCCCCCCCSCCTTCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHT-TCEEESSCCEEEEEESS
T ss_pred             ccccCCceEEEeccccccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhc-CCEEEeCCEEEEEEEeC
Confidence            0000000000                000000   000011111234467888899988887 78888885 99999888


Q ss_pred             CeEEEEEEEeCCccEEEEEcCeEEeecCCccc
Q 010623          193 GTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN  224 (506)
Q Consensus       193 ~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~  224 (506)
                      +++.+|+  ..+|++  ++||+||+|+|.+|.
T Consensus       251 ~~v~gV~--l~~G~~--i~Ad~VVlA~G~~s~  278 (549)
T 3nlc_A          251 GQITGVT--LSNGEE--IKSRHVVLAVGHSAR  278 (549)
T ss_dssp             SBEEEEE--ETTSCE--EECSCEEECCCTTCH
T ss_pred             CEEEEEE--ECCCCE--EECCEEEECCCCChh
Confidence            7766555  467763  679999999999995

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=99.32  E-value=2.1e-11  Score=128.71  Aligned_cols=69  Identities=14%  Similarity=0.229  Sum_probs=57.9

Q ss_pred             hHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEeecCCcccchhhcc
Q 010623          162 GRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNLRRSLC  230 (506)
Q Consensus       162 ~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~vR~~l~  230 (506)
                      ..+...|.+.+.+.++++++.++ |+++..+++++.+|.+.+ .+|+..+++|+.||+|||++|.++....
T Consensus       134 ~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s~~~~~~~  204 (602)
T 1kf6_A          134 FHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNT  204 (602)
T ss_dssp             HHHHHHHHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSBS
T ss_pred             HHHHHHHHHHHHhCCCcEEEeCCEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCCcccccCcC
Confidence            46888999999888669999885 999998888888887765 6787667899999999999999876554

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=99.31  E-value=1.8e-11  Score=127.59  Aligned_cols=153  Identities=16%  Similarity=0.172  Sum_probs=96.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC-CCCCcccccc---cc-cchHHHHHHhCc-hhHHhhcccceecce
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDL-SEPDRIVGEL---LQ-PGGYLKLIELGL-EDCVEQIDAQRVFGY  132 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~-~~~~~~~g~~---l~-~~~~~~l~~~g~-~~~~~~~~~~~~~~~  132 (506)
                      .++||+|||||++|+++|+.|++.|.+|+|+|+++ ......+...   +. ....+.++.+|- .......     .+.
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~-----~gi  100 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQ-----TGI  100 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHH-----HEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhh-----ccc
Confidence            35999999999999999999999999999999974 2221111111   11 011223333432 2111110     111


Q ss_pred             EE--EECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEE
Q 010623          133 AL--FKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTA  210 (506)
Q Consensus       133 ~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i  210 (506)
                      .+  ......         .........+++..+...|.+.+.+.++++++.++|+++..+++++.+|.  +.+|.  ++
T Consensus       101 ~f~~l~~~kG---------pav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~~~~Vt~L~~e~g~V~GV~--t~dG~--~i  167 (637)
T 2zxi_A          101 QFKMLNTRKG---------KAVQSPRAQADKKRYREYMKKVCENQENLYIKQEEVVDIIVKNNQVVGVR--TNLGV--EY  167 (637)
T ss_dssp             EEEEESTTSC---------GGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEESCEEEEEESSSBEEEEE--ETTSC--EE
T ss_pred             ceeecccccC---------ccccchhhhCCHHHHHHHHHHHHHhCCCCEEEEeEEEEEEecCCEEEEEE--ECCCc--EE
Confidence            11  110000         00001112457778899999999886689997778999988888776665  46775  46


Q ss_pred             EcCeEEeecCCcccchhhc
Q 010623          211 YAPLTIVCDGCFSNLRRSL  229 (506)
Q Consensus       211 ~a~~vV~AdG~~S~vR~~l  229 (506)
                      +||.||+|||.++..+...
T Consensus       168 ~AdaVVLATG~~s~~~~~~  186 (637)
T 2zxi_A          168 KTKAVVVTTGTFLNGVIYI  186 (637)
T ss_dssp             ECSEEEECCTTCBTCEEEE
T ss_pred             EeCEEEEccCCCccCceec
Confidence            7999999999998766543

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=99.31  E-value=7.3e-12  Score=131.87  Aligned_cols=164  Identities=19%  Similarity=0.253  Sum_probs=96.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc--cccccccchHHHHHHhCchhH----------------
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI--VGELLQPGGYLKLIELGLEDC----------------  120 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~--~g~~l~~~~~~~l~~~g~~~~----------------  120 (506)
                      .++||+|||||++|+++|+.|++.|++|+|+||.+......  .+..++.......++.|+.+.                
T Consensus       125 ~~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~  204 (572)
T 1d4d_A          125 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIN  204 (572)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTCS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCC
Confidence            46899999999999999999999999999999987544321  111111100000111111100                


Q ss_pred             ----Hhhcc--------cceecceEEEECCceeeeec-CCcCCCCC--cccccccchHHHHHHHHHHHcCCCEEEEece-
Q 010623          121 ----VEQID--------AQRVFGYALFKDGNRTQISY-PLEKFHSD--VAGRGFHNGRFVQRLREKAASLPNVRLEQGT-  184 (506)
Q Consensus       121 ----~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-  184 (506)
                          +..+.        .....+..+.      .... ........  +.........+...|.+.+.+. +++++.++ 
T Consensus       205 ~~~~v~~~~~~~~~~i~~l~~~Gv~~~------~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~-gv~i~~~t~  277 (572)
T 1d4d_A          205 DPELVKVLANNSSDSIDWLTSMGADMT------DVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKR-GTDIRLNSR  277 (572)
T ss_dssp             CHHHHHHHHHTHHHHHHHHHHHTCCCC------EEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHT-TCEEESSEE
T ss_pred             CHHHHHHHHHccHHHHHHHHhcCCccc------cccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHHHc-CCeEEecCE
Confidence                00000        0000011000      0000 00000000  0001123456888999999887 78998885 


Q ss_pred             EEEEEeeC-CeEEEEEEEeCCccEEEEEcCeEEeecCCcccchhhc
Q 010623          185 VTSLLEEK-GTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSL  229 (506)
Q Consensus       185 v~~~~~~~-~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~~l  229 (506)
                      |+++..++ +++.+|++.+.+|+..+++||.||.|+|++|..++++
T Consensus       278 v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~  323 (572)
T 1d4d_A          278 VVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERV  323 (572)
T ss_dssp             EEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCCTTCHHHH
T ss_pred             EEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCccCHHHH
Confidence            99998777 8888898877778777789999999999999865544

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.31  E-value=7.5e-11  Score=122.43  Aligned_cols=64  Identities=14%  Similarity=0.141  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccchhhccC
Q 010623          163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCN  231 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~~l~~  231 (506)
                      .+.+.|.+.+++. |++++.++ |+++..+++++++|+  ++||++  ++||.||.+.+.....++.+..
T Consensus       222 ~l~~aL~~~~~~~-Gg~I~~~~~V~~I~~~~~~~~gV~--~~~g~~--~~ad~VV~~a~~~~~~~~Ll~~  286 (501)
T 4dgk_A          222 ALVQGMIKLFQDL-GGEVVLNARVSHMETTGNKIEAVH--LEDGRR--FLTQAVASNADVVHTYRDLLSQ  286 (501)
T ss_dssp             HHHHHHHHHHHHT-TCEEECSCCEEEEEEETTEEEEEE--ETTSCE--EECSCEEECCC-----------
T ss_pred             chHHHHHHHHHHh-CCceeeecceeEEEeeCCeEEEEE--ecCCcE--EEcCEEEECCCHHHHHHHhccc
Confidence            4667788888888 67787775 999999999887766  578875  5699999988888777766643

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.30  E-value=1.4e-10  Score=117.70  Aligned_cols=58  Identities=19%  Similarity=0.225  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccch
Q 010623          163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLR  226 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR  226 (506)
                      .+.+.|.+.+.+. |++++.++ |+++..+++++++|+.   +|+  +++||.||.|.|.+...+
T Consensus       197 ~l~~~l~~~~~~~-G~~i~~~~~V~~i~~~~~~~~gv~~---~g~--~~~ad~VV~a~~~~~~~~  255 (425)
T 3ka7_A          197 GIIDALETVISAN-GGKIHTGQEVSKILIENGKAAGIIA---DDR--IHDADLVISNLGHAATAV  255 (425)
T ss_dssp             HHHHHHHHHHHHT-TCEEECSCCEEEEEEETTEEEEEEE---TTE--EEECSEEEECSCHHHHHH
T ss_pred             HHHHHHHHHHHHc-CCEEEECCceeEEEEECCEEEEEEE---CCE--EEECCEEEECCCHHHHHH
Confidence            4677788888887 67888775 9999998887766653   354  467999999999987643

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=99.30  E-value=2.8e-11  Score=126.58  Aligned_cols=154  Identities=23%  Similarity=0.255  Sum_probs=94.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC-CCCccccccccc-chHHHHHHh---C-chhHHhhcccceecc
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS-EPDRIVGELLQP-GGYLKLIEL---G-LEDCVEQIDAQRVFG  131 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~-~~~~~~g~~l~~-~~~~~l~~~---g-~~~~~~~~~~~~~~~  131 (506)
                      +.++||+|||||++|+++|+.|++.|.+|+|+|+.+. .....+...... ....+++++   + +......  . ....
T Consensus        19 ~~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d--~-~gi~   95 (641)
T 3cp8_A           19 SHMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAID--A-TGIQ   95 (641)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHH--H-HEEE
T ss_pred             cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHH--h-cCCc
Confidence            3469999999999999999999999999999999742 222111111110 011233332   2 1111100  0 0000


Q ss_pred             eEEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEE
Q 010623          132 YALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAY  211 (506)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~  211 (506)
                      +........     +    ........+++..+...|.+.+.+.++++++.++|+++..+++++.+|.  ..+|+  +++
T Consensus        96 f~~l~~~kg-----p----av~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~~V~~L~~d~g~V~GV~--t~~G~--~i~  162 (641)
T 3cp8_A           96 FRMLNRSKG-----P----AMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQDTVIGVSANSGKFSSVT--VRSGR--AIQ  162 (641)
T ss_dssp             EEEECSSSC-----T----TTCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEE--ETTSC--EEE
T ss_pred             hhhcccccC-----c----cccchhhhcCHHHHHHHHHHHHHhCCCCEEEeeEEEEEEecCCEEEEEE--ECCCc--EEE
Confidence            111111100     0    0011123567888999999999887789998778999988888776665  46675  467


Q ss_pred             cCeEEeecCCcccchh
Q 010623          212 APLTIVCDGCFSNLRR  227 (506)
Q Consensus       212 a~~vV~AdG~~S~vR~  227 (506)
                      ||.||+|||.++..+.
T Consensus       163 Ad~VVLATG~~s~~~i  178 (641)
T 3cp8_A          163 AKAAILACGTFLNGLI  178 (641)
T ss_dssp             EEEEEECCTTCBTCEE
T ss_pred             eCEEEECcCCCCCccc
Confidence            9999999999976443

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.28  E-value=2.6e-11  Score=107.77  Aligned_cols=117  Identities=26%  Similarity=0.352  Sum_probs=84.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      +||+|||||++|+.+|..|++.|.+|+|+|+.+....+.  .             .    +.                  
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~--~-------------~----~~------------------   44 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGV--S-------------R----VP------------------   44 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTC--S-------------C----CC------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCc--h-------------h----hh------------------
Confidence            699999999999999999999999999999986211100  0             0    00                  


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecC
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDG  220 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG  220 (506)
                         .++  ...     ..+....+.+.+.+.+++. +++++.++|+++..+++.   +.+.+++|   ++++|+||.|+|
T Consensus        45 ---~~~--~~~-----~~~~~~~~~~~l~~~~~~~-gv~v~~~~v~~i~~~~~~---~~v~~~~g---~i~ad~vI~A~G  107 (180)
T 2ywl_A           45 ---NYP--GLL-----DEPSGEELLRRLEAHARRY-GAEVRPGVVKGVRDMGGV---FEVETEEG---VEKAERLLLCTH  107 (180)
T ss_dssp             ---CST--TCT-----TCCCHHHHHHHHHHHHHHT-TCEEEECCCCEEEECSSS---EEEECSSC---EEEEEEEEECCT
T ss_pred             ---ccC--CCc-----CCCCHHHHHHHHHHHHHHc-CCEEEeCEEEEEEEcCCE---EEEEECCC---EEEECEEEECCC
Confidence               000  000     0134557888888888887 688887788888876654   44556677   467999999999


Q ss_pred             CcccchhhccC
Q 010623          221 CFSNLRRSLCN  231 (506)
Q Consensus       221 ~~S~vR~~l~~  231 (506)
                      .++.+++.+++
T Consensus       108 ~~~~~~~~~g~  118 (180)
T 2ywl_A          108 KDPTLPSLLGL  118 (180)
T ss_dssp             TCCHHHHHHTC
T ss_pred             CCCCccccCCC
Confidence            99988777654

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.26  E-value=4.8e-11  Score=122.06  Aligned_cols=69  Identities=17%  Similarity=0.185  Sum_probs=51.7

Q ss_pred             cccchHHHHHHHHHHHcCCCEEEEec-eEEEEEe---------------eCCeEEEEEEEeCCccEEEE--EcCeEEeec
Q 010623          158 GFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLE---------------EKGTIKGVQYKTKAGEELTA--YAPLTIVCD  219 (506)
Q Consensus       158 ~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~---------------~~~~v~~v~v~~~~G~~~~i--~a~~vV~Ad  219 (506)
                      .++...+...|.+.+.+. |++++.+ +|+++..               +++++.+|  .+.+|+   +  +||.||.|+
T Consensus       177 ~~~~~~l~~~L~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V--~t~~g~---i~~~Ad~VV~At  250 (448)
T 3axb_A          177 FLDAEKVVDYYYRRASGA-GVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAA--VLSDGT---RVEVGEKLVVAA  250 (448)
T ss_dssp             ECCHHHHHHHHHHHHHHT-TCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEE--EETTSC---EEEEEEEEEECC
T ss_pred             EEcHHHHHHHHHHHHHhC-CCEEEcCCeEEEEEecccccccccccccccCCCceEEE--EeCCCE---EeecCCEEEECC
Confidence            456668899999999887 6888876 5999987               45544444  456673   6  799999999


Q ss_pred             CCccc-chhhccCC
Q 010623          220 GCFSN-LRRSLCNP  232 (506)
Q Consensus       220 G~~S~-vR~~l~~~  232 (506)
                      |.+|. +.+.++..
T Consensus       251 G~~s~~l~~~~g~~  264 (448)
T 3axb_A          251 GVWSNRLLNPLGID  264 (448)
T ss_dssp             GGGHHHHHGGGTCC
T ss_pred             CcCHHHHHHHcCCC
Confidence            99986 66666554

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=99.25  E-value=3.1e-11  Score=121.81  Aligned_cols=167  Identities=16%  Similarity=0.060  Sum_probs=90.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCCCCcc--ccc-cc-ccch------HHHHHHhCchhHHhhc---
Q 010623           60 DADVIVVGAGVAGAALANTLAKD--GRRVHVIERDLSEPDRI--VGE-LL-QPGG------YLKLIELGLEDCVEQI---  124 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~~~~~~~--~g~-~l-~~~~------~~~l~~~g~~~~~~~~---  124 (506)
                      ++||+|||||++|+++|+.|+++  |++|+|+|+.......+  .+. .+ .+..      ....+.+.++......   
T Consensus        36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~~~s~~~~g~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  115 (405)
T 3c4n_A           36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQDIPAGQEAQAEWTREQLLGALGSGKT  115 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCTTSHHHHCCCEECGGGCCTTCHHHHHHHHHHHHTGGGSSCC
T ss_pred             cCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCCcchhccCCcceeecccCCchHHHHHHHHHHHHHHHhCCCCC
Confidence            48999999999999999999999  99999999975433221  111 12 1111      0111122222210000   


Q ss_pred             ccceecceEEEEC-----C----ceeeeecCC-------cCCC---CCcccccccchHHHHHHHHHHHcCCCEEEEec-e
Q 010623          125 DAQRVFGYALFKD-----G----NRTQISYPL-------EKFH---SDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-T  184 (506)
Q Consensus       125 ~~~~~~~~~~~~~-----~----~~~~~~~~~-------~~~~---~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~  184 (506)
                      ......+......     +    ......++.       ....   ..+....++...+...|.+.+.+. +++++++ +
T Consensus       116 ~~~~~~g~l~~~~~~~~~g~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~v~~~~l~~~L~~~~~~~-Gv~i~~~~~  194 (405)
T 3c4n_A          116 LEVEDRPLLHLLPAGEGSGLTPTLDALADFPEALALLDPARLPVARVDPRALTYRPGSLALLAAQQAIGQ-GAGLLLNTR  194 (405)
T ss_dssp             CCEEECCEEEEESSCCSSSCEEHHHHTTTCHHHHTTSCTTTSCEEEEETTCEEECHHHHHHHHHHHHHTT-TCEEECSCE
T ss_pred             CcEEeeCeEEehhhHhHCCCCCHHHHHHhCCCccccccCCcceEEEEcCCCEEEcHHHHHHHHHHHHHHC-CCEEEcCCE
Confidence            0000111111000     0    000000000       0000   011223456778999999999987 7788776 4


Q ss_pred             EE---------EEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcc-cchh-hccCCC
Q 010623          185 VT---------SLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFS-NLRR-SLCNPK  233 (506)
Q Consensus       185 v~---------~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S-~vR~-~l~~~~  233 (506)
                      |+         ++..+++++   .+.+.+|   +++||.||+|+|.+| .+++ .++...
T Consensus       195 v~~~~g~~~~~~i~~~~~~v---~v~~~~g---~i~a~~VV~A~G~~s~~l~~~~~g~~~  248 (405)
T 3c4n_A          195 AELVPGGVRLHRLTVTNTHQ---IVVHETR---QIRAGVIIVAAGAAGPALVEQGLGLHT  248 (405)
T ss_dssp             EEEETTEEEEECBCC----------CBCCE---EEEEEEEEECCGGGHHHHHHHHHCCCC
T ss_pred             EEeccccccccceEeeCCeE---EEEECCc---EEECCEEEECCCccHHHHHHHhcCCCC
Confidence            88         887666643   3445555   477999999999999 6877 777643

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.25  E-value=9.4e-12  Score=125.08  Aligned_cols=142  Identities=18%  Similarity=0.177  Sum_probs=83.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc---ccc--cccc--------------hHHHHHHhCchh
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIV---GEL--LQPG--------------GYLKLIELGLED  119 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~---g~~--l~~~--------------~~~~l~~~g~~~  119 (506)
                      .++||+|||||++|+++|+.|+++|.+|+|+||++.......   +..  +...              ....+..+...+
T Consensus         3 ~~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (401)
T 2gqf_A            3 QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWD   82 (401)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHH
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHH
Confidence            358999999999999999999999999999999875422110   000  0000              001111111111


Q ss_pred             HHhhcccceecceEEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEee----CCe
Q 010623          120 CVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEE----KGT  194 (506)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~----~~~  194 (506)
                      .+....   ..+..+......  ..++          .. +...+.+.|.+.+++. +++++.++ |+++..+    +++
T Consensus        83 ~~~~~~---~~Gi~~~~~~~g--~~~p----------~~-~~~~l~~~L~~~~~~~-Gv~i~~~~~v~~i~~~~~g~~~~  145 (401)
T 2gqf_A           83 FISLVA---EQGITYHEKELG--QLFC----------DE-GAEQIVEMLKSECDKY-GAKILLRSEVSQVERIQNDEKVR  145 (401)
T ss_dssp             HHHHHH---HTTCCEEECSTT--EEEE----------TT-CTHHHHHHHHHHHHHH-TCEEECSCCEEEEEECCSCSSCC
T ss_pred             HHHHHH---hCCCceEECcCC--EEcc----------CC-CHHHHHHHHHHHHHHC-CCEEEeCCEEEEEEcccCcCCCe
Confidence            111100   011111100000  0000          01 4567888888888876 78888885 9999866    443


Q ss_pred             EEEEEEEeCCccEEEEEcCeEEeecCCcc
Q 010623          195 IKGVQYKTKAGEELTAYAPLTIVCDGCFS  223 (506)
Q Consensus       195 v~~v~v~~~~G~~~~i~a~~vV~AdG~~S  223 (506)
                         +.+.+.+|   +++||.||.|+|.+|
T Consensus       146 ---~~v~~~~g---~i~ad~VVlAtG~~s  168 (401)
T 2gqf_A          146 ---FVLQVNST---QWQCKNLIVATGGLS  168 (401)
T ss_dssp             ---EEEEETTE---EEEESEEEECCCCSS
T ss_pred             ---EEEEECCC---EEECCEEEECCCCcc
Confidence               44556666   477999999999999

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.25  E-value=3.5e-10  Score=114.65  Aligned_cols=59  Identities=14%  Similarity=0.153  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccchhhcc
Q 010623          163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLC  230 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~~l~  230 (506)
                      .+.+.|.+.+++. |++++.++ |+++..+++++    + ..+|+  +++||.||.|.|.+... +.++
T Consensus       190 ~l~~~l~~~~~~~-G~~i~~~~~V~~i~~~~~~v----V-~~~g~--~~~ad~Vv~a~~~~~~~-~ll~  249 (421)
T 3nrn_A          190 AVIDELERIIMEN-KGKILTRKEVVEINIEEKKV----Y-TRDNE--EYSFDVAISNVGVRETV-KLIG  249 (421)
T ss_dssp             HHHHHHHHHHHTT-TCEEESSCCEEEEETTTTEE----E-ETTCC--EEECSEEEECSCHHHHH-HHHC
T ss_pred             HHHHHHHHHHHHC-CCEEEcCCeEEEEEEECCEE----E-EeCCc--EEEeCEEEECCCHHHHH-HhcC
Confidence            5667778888887 67888885 99999887754    3 34565  36799999999988654 3443

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=99.24  E-value=1.5e-10  Score=115.02  Aligned_cols=37  Identities=41%  Similarity=0.644  Sum_probs=34.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      +.++||+|||||++|+++|+.|+++|++|+|+||...
T Consensus         4 ~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~   40 (363)
T 1c0p_A            4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLP   40 (363)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCC
Confidence            3568999999999999999999999999999999753

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.24  E-value=1.2e-10  Score=119.71  Aligned_cols=62  Identities=21%  Similarity=0.302  Sum_probs=47.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC------CcEEEEecCCCCCCcccc-----------c----ccccchHHHHHHhCch
Q 010623           60 DADVIVVGAGVAGAALANTLAKDG------RRVHVIERDLSEPDRIVG-----------E----LLQPGGYLKLIELGLE  118 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G------~~v~vvE~~~~~~~~~~g-----------~----~l~~~~~~~l~~~g~~  118 (506)
                      .+||+|||||++||++|+.|+++|      ++|+|+|+++....+..+           .    ...+...++++++|+.
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~   84 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIERGPDSFLERKKSAPQLVKDLGLE   84 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCEECCTTCCEESSCCCEETTCTHHHHHHHHTTCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEEEeccCCEEeccChhhhhhCCHHHHHHHHHcCCc
Confidence            479999999999999999999999      999999998654432111           0    1234556788899887


Q ss_pred             hHH
Q 010623          119 DCV  121 (506)
Q Consensus       119 ~~~  121 (506)
                      +.+
T Consensus        85 ~~~   87 (470)
T 3i6d_A           85 HLL   87 (470)
T ss_dssp             TTE
T ss_pred             cee
Confidence            544

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=99.23  E-value=9e-11  Score=123.89  Aligned_cols=63  Identities=17%  Similarity=0.201  Sum_probs=53.8

Q ss_pred             hHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEeecCCcccc
Q 010623          162 GRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL  225 (506)
Q Consensus       162 ~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~v  225 (506)
                      ..+...|.+.+.+. +++++.++ |+++..+++++.+|.+.+ .+|+..+++|+.||.|+|++|.+
T Consensus       155 ~~l~~~L~~~~~~~-gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~~  219 (621)
T 2h88_A          155 HSLLHTLYGRSLRY-DTSYFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYGRT  219 (621)
T ss_dssp             HHHHHHHHHHHTTS-CCEEEETEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCGGG
T ss_pred             HHHHHHHHHHHHhC-CCEEEEceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccccc
Confidence            36888999998876 78888885 999998888898988876 67877789999999999999975

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=99.22  E-value=3.3e-11  Score=125.76  Aligned_cols=65  Identities=22%  Similarity=0.203  Sum_probs=49.8

Q ss_pred             hHHHHHHHHHHHcCCCEEEEece-EEEEEe-eCC------eEEEEEEEe-CCccEEEEEcCeEEeecCCcccch
Q 010623          162 GRFVQRLREKAASLPNVRLEQGT-VTSLLE-EKG------TIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNLR  226 (506)
Q Consensus       162 ~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~-~~~------~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~vR  226 (506)
                      ..+...|.+.+.+..+++++.++ |+++.. +++      ++.+|.+.+ .+|+..+++|+.||.|+|++|.+-
T Consensus       138 ~~l~~~L~~~~~~~~gv~i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~  211 (540)
T 1chu_A          138 REVETTLVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVY  211 (540)
T ss_dssp             ----CCCHHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGS
T ss_pred             HHHHHHHHHHHHcCCCCEEEeCcEEEEEEEcCCCCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCccccc
Confidence            35677788888875589999885 999987 445      788888876 477767789999999999999763

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.21  E-value=2.9e-11  Score=120.39  Aligned_cols=158  Identities=19%  Similarity=0.204  Sum_probs=89.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc--c-c-cccc-----c-hH-HHHHHhCchhHHhhccc--
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIV--G-E-LLQP-----G-GY-LKLIELGLEDCVEQIDA--  126 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~--g-~-~l~~-----~-~~-~~l~~~g~~~~~~~~~~--  126 (506)
                      ++||+|||||++|+++|+.|+++|++|+|+|+.+.......  + . .+..     . .. ...+.+.+++.+.....  
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~   81 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSHHGDTRLIRHAYGEGEKYVPLVLRAQMLWDELSRHNEDD   81 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTTCCEEEECSSCSSSSSSSCCSSEEEECSSCTTCGGGHHHHHHHHHHHHHHHTTCSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCccceeeeccCCCchHHHHHHHHHHHHHHHHHhCCCc
Confidence            58999999999999999999999999999999864321110  0 0 1110     0 00 11122222322221000  


Q ss_pred             --ceecceE-EEECCc-----------------------eeeeecCCcCCCC------CcccccccchHHHHHHHHHHHc
Q 010623          127 --QRVFGYA-LFKDGN-----------------------RTQISYPLEKFHS------DVAGRGFHNGRFVQRLREKAAS  174 (506)
Q Consensus       127 --~~~~~~~-~~~~~~-----------------------~~~~~~~~~~~~~------~~~~~~i~~~~l~~~L~~~~~~  174 (506)
                        ....+.. +.....                       .....+|.-....      .+....++...+.+.|.+.+.+
T Consensus        82 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~  161 (372)
T 2uzz_A           82 PIFVRSGVINLGPADSTFLANVAHSAEQWQLNVEKLDAQGIMARWPEIRVPDNYIGLFETDSGFLRSELAIKTWIQLAKE  161 (372)
T ss_dssp             CSEECCCEEEEEETTCHHHHHHHHHHHHTTCCEEEEEHHHHHHHCTTCCCCTTEEEEEESSCEEEEHHHHHHHHHHHHHH
T ss_pred             cceeeeceEEEeCCCcHHHHHHHHHHHHcCCCcEecCHHHHHhhCCCccCCCCceEEEeCCCcEEcHHHHHHHHHHHHHH
Confidence              0011111 111100                       0000011000000      1122345666888999999988


Q ss_pred             CCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCccc
Q 010623          175 LPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN  224 (506)
Q Consensus       175 ~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~  224 (506)
                      . +++++.+ +|+++..++++   +.+.+.+|+   ++||.||.|+|.+|.
T Consensus       162 ~-G~~i~~~~~V~~i~~~~~~---~~v~~~~g~---~~a~~vV~a~G~~s~  205 (372)
T 2uzz_A          162 A-GCAQLFNCPVTAIRHDDDG---VTIETADGE---YQAKKAIVCAGTWVK  205 (372)
T ss_dssp             T-TCEEECSCCEEEEEECSSS---EEEEESSCE---EEEEEEEECCGGGGG
T ss_pred             C-CCEEEcCCEEEEEEEcCCE---EEEEECCCe---EEcCEEEEcCCccHH
Confidence            7 6788877 59999887664   445566663   679999999999984

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.21  E-value=1.5e-10  Score=111.24  Aligned_cols=114  Identities=18%  Similarity=0.300  Sum_probs=83.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .+||+|||||++|+++|..|+++|++|+|+|+.+..     +. +..                     .           
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~-----~~-~~~---------------------~-----------   43 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERR-----NR-FAS---------------------H-----------   43 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCG-----GG-GCS---------------------C-----------
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcc-----cc-cch---------------------h-----------
Confidence            489999999999999999999999999999997410     00 000                     0           


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD  219 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad  219 (506)
                        ...++        ........++...+.+.+.+.+++.+..++|+++..+++.   +.+...+|+  ++++|.||.|+
T Consensus        44 --~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~---~~v~~~~g~--~~~~d~vviAt  108 (297)
T 3fbs_A           44 --SHGFL--------GQDGKAPGEIIAEARRQIERYPTIHWVEGRVTDAKGSFGE---FIVEIDGGR--RETAGRLILAM  108 (297)
T ss_dssp             --CCSST--------TCTTCCHHHHHHHHHHHHTTCTTEEEEESCEEEEEEETTE---EEEEETTSC--EEEEEEEEECC
T ss_pred             --hcCCc--------CCCCCCHHHHHHHHHHHHHhcCCeEEEEeEEEEEEEcCCe---EEEEECCCC--EEEcCEEEECC
Confidence              00000        0012345678888888888887899888889999888774   456677776  46699999999


Q ss_pred             CCcccch
Q 010623          220 GCFSNLR  226 (506)
Q Consensus       220 G~~S~vR  226 (506)
                      |..+...
T Consensus       109 G~~~~~~  115 (297)
T 3fbs_A          109 GVTDELP  115 (297)
T ss_dssp             CCEEECC
T ss_pred             CCCCCCC
Confidence            9976543

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=99.21  E-value=1.1e-10  Score=123.06  Aligned_cols=63  Identities=14%  Similarity=0.199  Sum_probs=52.8

Q ss_pred             hHHHHHHHHHHHcCCCEEEEece-EEEEEee-CCeEEEEEEEe-CCccEEEEEcCeEEeecCCcccc
Q 010623          162 GRFVQRLREKAASLPNVRLEQGT-VTSLLEE-KGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL  225 (506)
Q Consensus       162 ~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~-~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~v  225 (506)
                      ..+...|.+.+.+. +++++.++ |+++..+ ++++.+|.+.+ .+|+..+++|+.||.|+|++|.+
T Consensus       143 ~~l~~~L~~~~~~~-gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~~~  208 (588)
T 2wdq_A          143 HALLHTLYQQNLKN-HTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRI  208 (588)
T ss_dssp             HHHHHHHHHHHHHT-TCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCGGG
T ss_pred             HHHHHHHHHHHHhC-CCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCccc
Confidence            46788899998887 78898885 9999986 67888888875 67877778999999999999865

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.18  E-value=1.6e-10  Score=111.73  Aligned_cols=114  Identities=16%  Similarity=0.216  Sum_probs=76.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD  137 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  137 (506)
                      +++|||+||||||+|++||+.|+|.|++|+|+|+...     .| .+..                .+     .       
T Consensus         4 M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~-----gg-~~~~----------------~~-----~-------   49 (304)
T 4fk1_A            4 MKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNTN-----RN-RVTQ----------------NS-----H-------   49 (304)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCC-----GG-GGSS----------------CB-----C-------
T ss_pred             CCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC-----CC-eeee----------------ec-----C-------
Confidence            3469999999999999999999999999999998731     11 1100                00     0       


Q ss_pred             CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEe
Q 010623          138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV  217 (506)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~  217 (506)
                            .+..        ...+...++.+...+.+.+.+++.+...+++.+...+++.  .++.+.+|++  +++|.||.
T Consensus        50 ------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~g~~--~~a~~lii  111 (304)
T 4fk1_A           50 ------GFIT--------RDGIKPEEFKEIGLNEVMKYPSVHYYEKTVVMITKQSTGL--FEIVTKDHTK--YLAERVLL  111 (304)
T ss_dssp             ------CSTT--------CTTBCHHHHHHHHHHHHTTSTTEEEEECCEEEEEECTTSC--EEEEETTCCE--EEEEEEEE
T ss_pred             ------CccC--------CCCCCHHHHHHHHHHHHHhcCCEEEEeeEEEEeeecCCCc--EEEEECCCCE--EEeCEEEE
Confidence                  0000        0012334566667777777778888888877776654432  3455677864  56999999


Q ss_pred             ecCCcc
Q 010623          218 CDGCFS  223 (506)
Q Consensus       218 AdG~~S  223 (506)
                      |+|...
T Consensus       112 ATGs~p  117 (304)
T 4fk1_A          112 ATGMQE  117 (304)
T ss_dssp             CCCCEE
T ss_pred             ccCCcc
Confidence            999754

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.17  E-value=9.6e-11  Score=116.19  Aligned_cols=126  Identities=17%  Similarity=0.140  Sum_probs=84.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD  137 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  137 (506)
                      +..+||+||||||+|+++|+.|++.|++|+|+|+.+...    |       ...  ..        ....     ..+. 
T Consensus        12 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g----g-------~~~--~~--------~~~~-----~~~~-   64 (360)
T 3ab1_A           12 HDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLG----G-------QLA--AL--------YPEK-----HIYD-   64 (360)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC----H-------HHH--HT--------CTTS-----EECC-
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCC----C-------ccc--cc--------CCCc-----cccc-
Confidence            346899999999999999999999999999999985421    1       000  00        0000     0000 


Q ss_pred             CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623          138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI  216 (506)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV  216 (506)
                             .+  .      ...+.+..+...|.+.+.+. ++.++.+ +|+++..++++  .+++.+.+|++  +++|+||
T Consensus        65 -------~~--~------~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~v~~i~~~~~~--~~~v~~~~g~~--~~~~~li  124 (360)
T 3ab1_A           65 -------VA--G------FPEVPAIDLVESLWAQAERY-NPDVVLNETVTKYTKLDDG--TFETRTNTGNV--YRSRAVL  124 (360)
T ss_dssp             -------ST--T------CSSEEHHHHHHHHHHHHHTT-CCEEECSCCEEEEEECTTS--CEEEEETTSCE--EEEEEEE
T ss_pred             -------CC--C------CCCCCHHHHHHHHHHHHHHh-CCEEEcCCEEEEEEECCCc--eEEEEECCCcE--EEeeEEE
Confidence                   00  0      00134567888888888877 6777776 59999876542  24455677753  6799999


Q ss_pred             eecCCcccchhhcc
Q 010623          217 VCDGCFSNLRRSLC  230 (506)
Q Consensus       217 ~AdG~~S~vR~~l~  230 (506)
                      .|+|.+|..++.+.
T Consensus       125 ~AtG~~~~~~~~~~  138 (360)
T 3ab1_A          125 IAAGLGAFEPRKLP  138 (360)
T ss_dssp             ECCTTCSCCBCCCG
T ss_pred             EccCCCcCCCCCCC
Confidence            99999886655544

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.16  E-value=1.6e-10  Score=113.32  Aligned_cols=124  Identities=21%  Similarity=0.241  Sum_probs=83.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      ++||+|||||++|+++|+.|++.|++|+|+|+++...    |       .. . ..        ....     .++.   
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g----g-------~~-~-~~--------~~~~-----~~~~---   55 (335)
T 2zbw_A            5 HTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPG----G-------QL-T-AL--------YPEK-----YIYD---   55 (335)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSC----H-------HH-H-HT--------CTTS-----EECC---
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCC----C-------ee-e-cc--------CCCc-----eeec---
Confidence            5899999999999999999999999999999985321    1       00 0 00        0000     0000   


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                           .+  .+      ..+.+.++...|.+.+.+. ++.++.+ +|+++..+++   .+++.+.+|++  +++|.||.|
T Consensus        56 -----~~--~~------~~~~~~~~~~~l~~~~~~~-~~~~~~~~~v~~i~~~~~---~~~v~~~~g~~--~~~~~lv~A  116 (335)
T 2zbw_A           56 -----VA--GF------PKVYAKDLVKGLVEQVAPF-NPVYSLGERAETLEREGD---LFKVTTSQGNA--YTAKAVIIA  116 (335)
T ss_dssp             -----ST--TC------SSEEHHHHHHHHHHHHGGG-CCEEEESCCEEEEEEETT---EEEEEETTSCE--EEEEEEEEC
T ss_pred             -----cC--CC------CCCCHHHHHHHHHHHHHHc-CCEEEeCCEEEEEEECCC---EEEEEECCCCE--EEeCEEEEC
Confidence                 00  00      0134566778888888776 5677666 5999988766   35566677753  669999999


Q ss_pred             cCCcccchhhccC
Q 010623          219 DGCFSNLRRSLCN  231 (506)
Q Consensus       219 dG~~S~vR~~l~~  231 (506)
                      +|.+|...+...+
T Consensus       117 tG~~~~~p~~~~i  129 (335)
T 2zbw_A          117 AGVGAFEPRRIGA  129 (335)
T ss_dssp             CTTSEEEECCCCC
T ss_pred             CCCCCCCCCCCCC
Confidence            9998766554443

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.14  E-value=2.3e-10  Score=112.85  Aligned_cols=129  Identities=16%  Similarity=0.173  Sum_probs=82.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      ++||+|||||++|+++|+.|+++|++|+|+|+.+.....     .. +.         ++.+.           ......
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~-----~~-~~---------~~~~~-----------~~~~~~   56 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGA-----WQ-HA---------WHSLH-----------LFSPAG   56 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGG-----GG-GS---------CTTCB-----------CSSCGG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCc-----cc-CC---------CCCcE-----------ecCchh
Confidence            489999999999999999999999999999998643211     00 00         00000           000000


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEE-EEeCCccEEEEEcCeEEe
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQ-YKTKAGEELTAYAPLTIV  217 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~-v~~~~G~~~~i~a~~vV~  217 (506)
                        ...++..... .......++..+.+.|.+.+.+. +++++.+ +|+++..+++.   +. +.+.+|   ++++|.||.
T Consensus        57 --~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~v~~i~~~~~~---~~~v~~~~g---~~~~d~vV~  126 (357)
T 4a9w_A           57 --WSSIPGWPMP-ASQGPYPARAEVLAYLAQYEQKY-ALPVLRPIRVQRVSHFGER---LRVVARDGR---QWLARAVIS  126 (357)
T ss_dssp             --GSCCSSSCCC-CCSSSSCBHHHHHHHHHHHHHHT-TCCEECSCCEEEEEEETTE---EEEEETTSC---EEEEEEEEE
T ss_pred             --hhhCCCCCCC-CCccCCCCHHHHHHHHHHHHHHc-CCEEEcCCEEEEEEECCCc---EEEEEeCCC---EEEeCEEEE
Confidence              0000000000 01112345678888898888887 6778877 59999988774   45 656666   467999999


Q ss_pred             ecCCccc
Q 010623          218 CDGCFSN  224 (506)
Q Consensus       218 AdG~~S~  224 (506)
                      |+|.+|.
T Consensus       127 AtG~~~~  133 (357)
T 4a9w_A          127 ATGTWGE  133 (357)
T ss_dssp             CCCSGGG
T ss_pred             CCCCCCC
Confidence            9999874

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=99.14  E-value=1.7e-10  Score=122.63  Aligned_cols=66  Identities=21%  Similarity=0.176  Sum_probs=52.7

Q ss_pred             cchHHHHHHHHHHHcC-CCEEEEece-EEEEEeeCC---eEEEEEEEe-CCccEEEEEcCeEEeecCCcccc
Q 010623          160 HNGRFVQRLREKAASL-PNVRLEQGT-VTSLLEEKG---TIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL  225 (506)
Q Consensus       160 ~~~~l~~~L~~~~~~~-~~v~i~~~~-v~~~~~~~~---~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~v  225 (506)
                      +...+...|.+.+.+. ++++++.++ ++++..+++   ++.||.+.+ .+|+..+++|+.||.|+|+++.+
T Consensus       164 ~G~~i~~~L~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG~g~~  235 (662)
T 3gyx_A          164 NGESYKVIVAEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGGAVNV  235 (662)
T ss_dssp             EETSHHHHHHHHHHHHHCTTTEECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCSS
T ss_pred             CHHHHHHHHHHHHHhcCCCcEEEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeCEEEECCCccccc
Confidence            3456788888888775 378888775 899888776   899988765 57877789999999999999964

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.14  E-value=8.9e-10  Score=108.39  Aligned_cols=35  Identities=29%  Similarity=0.426  Sum_probs=32.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHH---CCCcEEEEecCCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAK---DGRRVHVIERDLSE   95 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~---~G~~v~vvE~~~~~   95 (506)
                      .||+|||||++|+++|+.|++   .|++|+|+||++..
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~   39 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDS   39 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCC
Confidence            589999999999999999999   99999999998643

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.13  E-value=1.4e-10  Score=113.73  Aligned_cols=123  Identities=17%  Similarity=0.231  Sum_probs=81.7

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEE
Q 010623           57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFK  136 (506)
Q Consensus        57 ~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  136 (506)
                      .++.+||+|||||++|+++|+.|+++|++|+|+|+.+.......|. +....                   .        
T Consensus        19 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~-~~~~~-------------------~--------   70 (338)
T 3itj_A           19 SHVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQ-LTTTT-------------------E--------   70 (338)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCG-GGGSS-------------------E--------
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcc-cccch-------------------h--------
Confidence            3456999999999999999999999999999999975211111111 10000                   0        


Q ss_pred             CCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEe---CCccEEEEEcC
Q 010623          137 DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKT---KAGEELTAYAP  213 (506)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~---~~G~~~~i~a~  213 (506)
                           ...++  .     ....+.+..+...|.+.+.+. +++++.++|+++..+++.+   .+..   .++.  ++++|
T Consensus        71 -----~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~-gv~i~~~~v~~i~~~~~~~---~v~~~~~~~~~--~~~~d  132 (338)
T 3itj_A           71 -----IENFP--G-----FPDGLTGSELMDRMREQSTKF-GTEIITETVSKVDLSSKPF---KLWTEFNEDAE--PVTTD  132 (338)
T ss_dssp             -----ECCST--T-----CTTCEEHHHHHHHHHHHHHHT-TCEEECSCEEEEECSSSSE---EEEETTCSSSC--CEEEE
T ss_pred             -----hcccC--C-----CcccCCHHHHHHHHHHHHHHc-CCEEEEeEEEEEEEcCCEE---EEEEEecCCCc--EEEeC
Confidence                 00010  0     011245667888888888887 7888888888988776643   3434   2444  46699


Q ss_pred             eEEeecCCcccc
Q 010623          214 LTIVCDGCFSNL  225 (506)
Q Consensus       214 ~vV~AdG~~S~v  225 (506)
                      .||.|+|..+..
T Consensus       133 ~vvlAtG~~~~~  144 (338)
T 3itj_A          133 AIILATGASAKR  144 (338)
T ss_dssp             EEEECCCEEECC
T ss_pred             EEEECcCCCcCC
Confidence            999999987643

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=99.10  E-value=5.3e-10  Score=118.85  Aligned_cols=62  Identities=15%  Similarity=0.325  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEeecCCcccc
Q 010623          163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL  225 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~v  225 (506)
                      .+...|.+.+.+. +++++.++ |+++..+++++.+|.+.+ .+|+..+++|+.||.|+|+++.+
T Consensus       159 ~l~~~L~~~a~~~-gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~~  222 (660)
T 2bs2_A          159 TMLFAVANECLKL-GVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRI  222 (660)
T ss_dssp             HHHHHHHHHHHHH-TCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGGG
T ss_pred             HHHHHHHHHHHhC-CCEEEECcEEEEEEecCCEEEEEEEEECCCCcEEEEEcCEEEEccCcchhh
Confidence            5788888888876 78888885 999998888888888765 67877778999999999999965

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.10  E-value=2.6e-10  Score=117.19  Aligned_cols=63  Identities=13%  Similarity=0.150  Sum_probs=49.2

Q ss_pred             chHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccchhh
Q 010623          161 NGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRS  228 (506)
Q Consensus       161 ~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~~  228 (506)
                      ...+...|.+.+++. +++++.++ | ++..+++++.++.+.+.+|+   ++||.||.|+|++|.++..
T Consensus       118 g~~l~~~L~~~~~~~-gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g~---~~a~~VVlAtGg~~~~~~~  181 (472)
T 2e5v_A          118 GREIFNFLLKLAREE-GIPIIEDRLV-EIRVKDGKVTGFVTEKRGLV---EDVDKLVLATGGYSYLYEY  181 (472)
T ss_dssp             HHHHHHHHHHHHHHT-TCCEECCCEE-EEEEETTEEEEEEETTTEEE---CCCSEEEECCCCCGGGSSS
T ss_pred             HHHHHHHHHHHHHhC-CCEEEECcEE-EEEEeCCEEEEEEEEeCCCe---EEeeeEEECCCCCcccCcc
Confidence            346778888888655 78888886 8 99888888888877554443   5699999999999988754

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.09  E-value=7.7e-10  Score=107.14  Aligned_cols=115  Identities=18%  Similarity=0.278  Sum_probs=80.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      +||+||||||+|+++|+.|++.|+ +|+|+|++. .    .|......               ..               
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~-~----gg~~~~~~---------------~~---------------   46 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGM-P----GGQITGSS---------------EI---------------   46 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSSS-T----TCGGGGCS---------------CB---------------
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCCC-C----Cccccccc---------------cc---------------
Confidence            699999999999999999999999 999999962 1    11111100               00               


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD  219 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad  219 (506)
                         ..++  .     ....+++..+.+.|.+.+.+. +++++.++|+++..+++.   +++...+|+  ++++|+||.|+
T Consensus        47 ---~~~~--~-----~~~~~~~~~~~~~l~~~~~~~-~v~~~~~~v~~i~~~~~~---~~v~~~~g~--~~~~~~vv~At  110 (311)
T 2q0l_A           47 ---ENYP--G-----VKEVVSGLDFMQPWQEQCFRF-GLKHEMTAVQRVSKKDSH---FVILAEDGK--TFEAKSVIIAT  110 (311)
T ss_dssp             ---CCST--T-----CCSCBCHHHHHHHHHHHHHTT-SCEEECSCEEEEEEETTE---EEEEETTSC--EEEEEEEEECC
T ss_pred             ---ccCC--C-----CcccCCHHHHHHHHHHHHHHc-CCEEEEEEEEEEEEcCCE---EEEEEcCCC--EEECCEEEECC
Confidence               0000  0     001345667888888888877 788877779999887763   445456776  46799999999


Q ss_pred             CCcccch
Q 010623          220 GCFSNLR  226 (506)
Q Consensus       220 G~~S~vR  226 (506)
                      |.++...
T Consensus       111 G~~~~~~  117 (311)
T 2q0l_A          111 GGSPKRT  117 (311)
T ss_dssp             CEEECCC
T ss_pred             CCCCCCC
Confidence            9877554

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=99.09  E-value=8.9e-11  Score=125.11  Aligned_cols=65  Identities=14%  Similarity=0.132  Sum_probs=50.6

Q ss_pred             chHHHHHHHHHHHcCCCE-EEEece-EEEEEeeCC---eEEEEEEEe-CCccEEEEEcCeEEeecCCcccc
Q 010623          161 NGRFVQRLREKAASLPNV-RLEQGT-VTSLLEEKG---TIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL  225 (506)
Q Consensus       161 ~~~l~~~L~~~~~~~~~v-~i~~~~-v~~~~~~~~---~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~v  225 (506)
                      ...+...|.+.+.+.+++ +++.++ |+++..+++   ++.||.+.+ .+|+..+++|+.||.|+|++|..
T Consensus       150 g~~~~~~l~~~~~~~~gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~~~  220 (643)
T 1jnr_A          150 GESYKPIIAEAAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGATLL  220 (643)
T ss_dssp             ETTHHHHHHHHHHHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCSS
T ss_pred             cHHHHHHHHHHHHhcCCCcEEEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCccccc
Confidence            345677777777765367 788775 999998777   899988754 67776678999999999999964

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.08  E-value=6.4e-10  Score=122.39  Aligned_cols=70  Identities=26%  Similarity=0.319  Sum_probs=53.0

Q ss_pred             ccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccc-hhhccCC
Q 010623          157 RGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNL-RRSLCNP  232 (506)
Q Consensus       157 ~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~v-R~~l~~~  232 (506)
                      ..++...+...|.+.+.+. |++++.+ +|+++..+++++.+|+  +.+|   +++||.||.|+|.+|.. .+.++..
T Consensus       146 g~v~p~~l~~~L~~~a~~~-Gv~i~~~t~V~~i~~~~~~v~~V~--t~~G---~i~Ad~VV~AaG~~s~~l~~~~g~~  217 (830)
T 1pj5_A          146 GLASAARAVQLLIKRTESA-GVTYRGSTTVTGIEQSGGRVTGVQ--TADG---VIPADIVVSCAGFWGAKIGAMIGMA  217 (830)
T ss_dssp             EEECHHHHHHHHHHHHHHT-TCEEECSCCEEEEEEETTEEEEEE--ETTE---EEECSEEEECCGGGHHHHHHTTTCC
T ss_pred             ceEcHHHHHHHHHHHHHHc-CCEEECCceEEEEEEeCCEEEEEE--ECCc---EEECCEEEECCccchHHHHHHhCCC
Confidence            3457778999999999988 6888876 5999998888655443  5666   47799999999999953 3445543

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.07  E-value=8.9e-10  Score=107.18  Aligned_cols=116  Identities=23%  Similarity=0.301  Sum_probs=78.4

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEE
Q 010623           57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFK  136 (506)
Q Consensus        57 ~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  136 (506)
                      |+.++||+||||||+|+++|+.|+++|++|+|+|+.. .    .|......               ..            
T Consensus        13 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~----gg~~~~~~---------------~~------------   60 (319)
T 3cty_A           13 KERDFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAV-A----GGLTAEAP---------------LV------------   60 (319)
T ss_dssp             -CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-T----TGGGGGCS---------------CB------------
T ss_pred             ccCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC-C----Cccccccc---------------hh------------
Confidence            4557999999999999999999999999999999952 1    11100000               00            


Q ss_pred             CCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623          137 DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI  216 (506)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV  216 (506)
                            ..++  .+      ..+.+..+...+.+.+.+. +++++.++|+++..+++.   +++.. +++  ++++|+||
T Consensus        61 ------~~~~--~~------~~~~~~~~~~~~~~~~~~~-~v~~~~~~v~~i~~~~~~---~~v~~-~~~--~~~~~~li  119 (319)
T 3cty_A           61 ------ENYL--GF------KSIVGSELAKLFADHAANY-AKIREGVEVRSIKKTQGG---FDIET-NDD--TYHAKYVI  119 (319)
T ss_dssp             ------CCBT--TB------SSBCHHHHHHHHHHHHHTT-SEEEETCCEEEEEEETTE---EEEEE-SSS--EEEEEEEE
T ss_pred             ------hhcC--CC------cccCHHHHHHHHHHHHHHc-CCEEEEeeEEEEEEeCCE---EEEEE-CCC--EEEeCEEE
Confidence                  0000  00      1234456777888888877 788888779999877664   33444 444  36799999


Q ss_pred             eecCCcccc
Q 010623          217 VCDGCFSNL  225 (506)
Q Consensus       217 ~AdG~~S~v  225 (506)
                      .|+|.++..
T Consensus       120 ~AtG~~~~~  128 (319)
T 3cty_A          120 ITTGTTHKH  128 (319)
T ss_dssp             ECCCEEECC
T ss_pred             ECCCCCccc
Confidence            999987643

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.07  E-value=7.3e-10  Score=107.69  Aligned_cols=113  Identities=19%  Similarity=0.131  Sum_probs=78.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG  138 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (506)
                      +.+||+|||||++|+++|+.|+++|++|+|+|++  .     |..+..                . .             
T Consensus        14 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~-----gg~~~~----------------~-~-------------   56 (323)
T 3f8d_A           14 EKFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--P-----GGQLTE----------------A-G-------------   56 (323)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--T-----TGGGGG----------------C-C-------------
T ss_pred             CccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--C-----CCeecc----------------c-c-------------
Confidence            4589999999999999999999999999999997  1     111110                0 0             


Q ss_pred             ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                        ....++  ..      ..+....+...+.+.+.+. +++++.++|+++..+++.   +.+...+|+  ++++|.||.|
T Consensus        57 --~~~~~~--~~------~~~~~~~~~~~~~~~~~~~-~v~~~~~~v~~i~~~~~~---~~v~~~~g~--~~~~d~lvlA  120 (323)
T 3f8d_A           57 --IVDDYL--GL------IEIQASDMIKVFNKHIEKY-EVPVLLDIVEKIENRGDE---FVVKTKRKG--EFKADSVILG  120 (323)
T ss_dssp             --EECCST--TS------TTEEHHHHHHHHHHHHHTT-TCCEEESCEEEEEEC--C---EEEEESSSC--EEEEEEEEEC
T ss_pred             --cccccC--CC------CCCCHHHHHHHHHHHHHHc-CCEEEEEEEEEEEecCCE---EEEEECCCC--EEEcCEEEEC
Confidence              000001  00      0134567888888888887 677777779999877653   445567766  4669999999


Q ss_pred             cCCccc
Q 010623          219 DGCFSN  224 (506)
Q Consensus       219 dG~~S~  224 (506)
                      +|....
T Consensus       121 tG~~~~  126 (323)
T 3f8d_A          121 IGVKRR  126 (323)
T ss_dssp             CCCEEC
T ss_pred             cCCCCc
Confidence            998854

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.06  E-value=7.7e-10  Score=113.04  Aligned_cols=158  Identities=18%  Similarity=0.211  Sum_probs=84.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecc-----
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGR--RVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFG-----  131 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~-----  131 (506)
                      ..+||+||||||+|+++|..|++.|.  +|+|+|+.+.....    ........  ..+++..........+...     
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~----~~~~~~~~--~~~~ip~~~~~~~~~~~~~g~~~~   78 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGV----WNYTSTLS--NKLPVPSTNPILTTEPIVGPAALP   78 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTT----CSCCSCCC--SCCCSSBCCTTCCCCCBCCSSSCC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCe----ecCCCCCC--cccccccccccccccccccccccC
Confidence            35899999999999999999999999  99999998543211    00000000  0000000000000000000     


Q ss_pred             ---eEEEE----CCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEe-
Q 010623          132 ---YALFK----DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKT-  202 (506)
Q Consensus       132 ---~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~-  202 (506)
                         ...+.    +.......++...+.. ......++..+.+.|.+.+.+. +..++++ +|+++..+++.+. |++.+ 
T Consensus        79 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~-~~~i~~~t~V~~v~~~~~~~~-V~~~~~  155 (447)
T 2gv8_A           79 VYPSPLYRDLQTNTPIELMGYCDQSFKP-QTLQFPHRHTIQEYQRIYAQPL-LPFIKLATDVLDIEKKDGSWV-VTYKGT  155 (447)
T ss_dssp             BCCCCCCTTCBCSSCHHHHSCTTCCCCT-TCCSSCBHHHHHHHHHHHHGGG-GGGEECSEEEEEEEEETTEEE-EEEEES
T ss_pred             CccCchhhhhccCCCHHHhccCCCCCCC-CCCCCCCHHHHHHHHHHHHHHh-hCeEEeCCEEEEEEeCCCeEE-EEEeec
Confidence               00000    0000000010000000 1112356778889998888876 4556666 4999988777533 55443 


Q ss_pred             CCcc-EEEEEcCeEEeecCCcccc
Q 010623          203 KAGE-ELTAYAPLTIVCDGCFSNL  225 (506)
Q Consensus       203 ~~G~-~~~i~a~~vV~AdG~~S~v  225 (506)
                      .+|+ ..++++|.||+|+|.+|.-
T Consensus       156 ~~G~~~~~~~~d~VVvAtG~~s~p  179 (447)
T 2gv8_A          156 KAGSPISKDIFDAVSICNGHYEVP  179 (447)
T ss_dssp             STTCCEEEEEESEEEECCCSSSSB
T ss_pred             CCCCeeEEEEeCEEEECCCCCCCC
Confidence            2365 4467899999999998753

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.05  E-value=1.2e-08  Score=104.98  Aligned_cols=62  Identities=16%  Similarity=0.224  Sum_probs=46.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCCccc-----c-------c---ccccchHHHHHHhCchhHH
Q 010623           60 DADVIVVGAGVAGAALANTLAKDG--RRVHVIERDLSEPDRIV-----G-------E---LLQPGGYLKLIELGLEDCV  121 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G--~~v~vvE~~~~~~~~~~-----g-------~---~l~~~~~~~l~~~g~~~~~  121 (506)
                      .+||+|||||++||++|+.|+++|  ++|+|+|+++....+..     |       .   ...+...+.++++|+.+.+
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~l~~~lg~~~~~   82 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDGFTIERGPDSYVARKHILTDLIEAIGLGEKL   82 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCEECSTTCCEESSCCCEETTSTHHHHHHHHTTCGGGE
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEEEeeCCEEEecCchhhhcccHHHHHHHHHcCCcceE
Confidence            579999999999999999999999  99999999765432111     1       0   1234456788889887544

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=99.05  E-value=1.6e-09  Score=106.86  Aligned_cols=33  Identities=27%  Similarity=0.390  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC------CcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDG------RRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G------~~v~vvE~~~   93 (506)
                      +||+|||||++|+++|+.|+++|      .+|+|+|+..
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            48999999999999999999998      9999999985

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.03  E-value=1e-09  Score=107.00  Aligned_cols=117  Identities=17%  Similarity=0.251  Sum_probs=78.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG  138 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (506)
                      ..+||+||||||+|+++|+.|+++|++|+|+|+.. .     |..+...        .      ..              
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~-----gg~~~~~--------~------~~--------------   52 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGM-P-----GGQIAWS--------E------EV--------------   52 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-T-----TGGGGGC--------S------CB--------------
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCC-C-----Ccccccc--------c------cc--------------
Confidence            35899999999999999999999999999999972 1     1111100        0      00              


Q ss_pred             ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEee--CCeEEEEEEEeCCccEEEEEcCeEE
Q 010623          139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEE--KGTIKGVQYKTKAGEELTAYAPLTI  216 (506)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~--~~~v~~v~v~~~~G~~~~i~a~~vV  216 (506)
                          ..++  .+     ...+++..+.+.+.+.+.+. +++++.++|+++..+  ++.  .+++...+|+  ++++|+||
T Consensus        53 ----~~~~--~~-----~~~~~~~~~~~~l~~~~~~~-gv~~~~~~v~~i~~~~~~~~--~~~v~~~~g~--~~~~~~vv  116 (325)
T 2q7v_A           53 ----ENFP--GF-----PEPIAGMELAQRMHQQAEKF-GAKVEMDEVQGVQHDATSHP--YPFTVRGYNG--EYRAKAVI  116 (325)
T ss_dssp             ----CCST--TC-----SSCBCHHHHHHHHHHHHHHT-TCEEEECCEEEEEECTTSSS--CCEEEEESSC--EEEEEEEE
T ss_pred             ----ccCC--CC-----CCCCCHHHHHHHHHHHHHHc-CCEEEeeeEEEEEeccCCCc--eEEEEECCCC--EEEeCEEE
Confidence                0000  00     01234567788888888887 677877789988776  432  0233345665  46799999


Q ss_pred             eecCCcccc
Q 010623          217 VCDGCFSNL  225 (506)
Q Consensus       217 ~AdG~~S~v  225 (506)
                      .|+|.++..
T Consensus       117 ~AtG~~~~~  125 (325)
T 2q7v_A          117 LATGADPRK  125 (325)
T ss_dssp             ECCCEEECC
T ss_pred             ECcCCCcCC
Confidence            999987643

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.00  E-value=1.5e-09  Score=113.61  Aligned_cols=140  Identities=23%  Similarity=0.213  Sum_probs=81.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG  138 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (506)
                      .++||+|||||++|+++|+.|++.|++|+|+|+++....... ..-.|         |..-   ... .....+.+ .  
T Consensus        15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~-~~~~p---------g~~~---d~~-~~~~~~~f-~--   77 (542)
T 1w4x_A           15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWY-WNRYP---------GARC---DIE-SIEYCYSF-S--   77 (542)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHH-HCCCT---------TCBC---SSC-TTTSSCCS-C--
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccc-ccCCC---------ceee---ccc-cccccccc-C--
Confidence            468999999999999999999999999999999864321100 00000         0000   000 00000000 0  


Q ss_pred             ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCC-CEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623          139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLP-NVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI  216 (506)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~-~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV  216 (506)
                      ......+.       ......++.++.+.|...+.+.+ ++.++++ +|+++..+++.. .++++.++|++  ++||+||
T Consensus        78 ~~~~~~~~-------~~~~~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~-~w~V~~~~G~~--~~ad~vV  147 (542)
T 1w4x_A           78 EEVLQEWN-------WTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATN-TWTVDTNHGDR--IRARYLI  147 (542)
T ss_dssp             HHHHHHCC-------CCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTT-EEEEEETTCCE--EEEEEEE
T ss_pred             hhhhhccC-------cccccCCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCC-eEEEEECCCCE--EEeCEEE
Confidence            00000000       00113456677788877777663 2456666 499988765311 24455677863  6799999


Q ss_pred             eecCCcccc
Q 010623          217 VCDGCFSNL  225 (506)
Q Consensus       217 ~AdG~~S~v  225 (506)
                      .|+|.+|.-
T Consensus       148 ~AtG~~s~p  156 (542)
T 1w4x_A          148 MASGQLSVP  156 (542)
T ss_dssp             ECCCSCCCC
T ss_pred             ECcCCCCCC
Confidence            999998754

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=98.98  E-value=2.1e-08  Score=103.19  Aligned_cols=63  Identities=24%  Similarity=0.334  Sum_probs=47.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCccccc------------cc---ccchHHHHHHhCchhHH
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGE------------LL---QPGGYLKLIELGLEDCV  121 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~------------~l---~~~~~~~l~~~g~~~~~  121 (506)
                      .++||+|||||++||++|+.|+++|++|+|+|+++....+....            .+   .+...++++++|+.+.+
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g~~~~~g~~~~~~~~~~~~~~~~~~gl~~~~   92 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDREPATRALAAALNLEGRI   92 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEETTEEEESSCCCEETTCHHHHHHHHHTTCGGGE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeeeeccCCeeeecChhhhhhhhHHHHHHHHHcCCccee
Confidence            35899999999999999999999999999999987654322110            11   24456788899987544

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.98  E-value=1.5e-09  Score=105.86  Aligned_cols=117  Identities=17%  Similarity=0.192  Sum_probs=79.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .+||+|||||++|+++|+.|+++|++|+|+|+.+...    |. +        ..        ....     ...+    
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g----G~-~--------~~--------~~~~-----~~~~----   56 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLG----GQ-L--------SA--------LYPE-----KYIY----   56 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC----HH-H--------HH--------HCTT-----SEEC----
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCC----ce-e--------hh--------cCCC-----ceEe----
Confidence            4799999999999999999999999999999986421    10 0        00        0000     0000    


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                          .++  .+      ..+.+.++...+.+.+.+. ++.++.+ +|+++..++++  .+.+...+|+   +++|.||.|
T Consensus        57 ----~~~--~~------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~--~~~v~~~~g~---~~~d~vVlA  118 (332)
T 3lzw_A           57 ----DVA--GF------PKIRAQELINNLKEQMAKF-DQTICLEQAVESVEKQADG--VFKLVTNEET---HYSKTVIIT  118 (332)
T ss_dssp             ----CST--TC------SSEEHHHHHHHHHHHHTTS-CCEEECSCCEEEEEECTTS--CEEEEESSEE---EEEEEEEEC
T ss_pred             ----ccC--CC------CCCCHHHHHHHHHHHHHHh-CCcEEccCEEEEEEECCCC--cEEEEECCCE---EEeCEEEEC
Confidence                000  00      0134567888888888887 7888875 59999877652  2445566774   679999999


Q ss_pred             cCCccc
Q 010623          219 DGCFSN  224 (506)
Q Consensus       219 dG~~S~  224 (506)
                      +|.+|.
T Consensus       119 tG~~~~  124 (332)
T 3lzw_A          119 AGNGAF  124 (332)
T ss_dssp             CTTSCC
T ss_pred             CCCCcC
Confidence            999653

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.98  E-value=8.8e-10  Score=107.85  Aligned_cols=119  Identities=17%  Similarity=0.216  Sum_probs=78.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      ++||+||||||+|+++|+.|++.|++|+|+|+.........|. +...                 .  .     .     
T Consensus         8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~-~~~~-----------------~--~-----~-----   57 (333)
T 1vdc_A            8 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQ-LTTT-----------------T--D-----V-----   57 (333)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCG-GGGC-----------------S--E-----E-----
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCce-eeec-----------------c--c-----c-----
Confidence            4899999999999999999999999999999831110111110 0000                 0  0     0     


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD  219 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad  219 (506)
                         ..++  .+     ...+.+..+...|.+.+.+. +++++.++|+++..+++.   +++.. +|+  ++++|+||.|+
T Consensus        58 ---~~~~--~~-----~~~~~~~~~~~~l~~~~~~~-gv~~~~~~v~~i~~~~~~---~~v~~-~~~--~~~~~~vv~A~  120 (333)
T 1vdc_A           58 ---ENFP--GF-----PEGILGVELTDKFRKQSERF-GTTIFTETVTKVDFSSKP---FKLFT-DSK--AILADAVILAI  120 (333)
T ss_dssp             ---CCST--TC-----TTCEEHHHHHHHHHHHHHHT-TCEEECCCCCEEECSSSS---EEEEC-SSE--EEEEEEEEECC
T ss_pred             ---ccCC--CC-----ccCCCHHHHHHHHHHHHHHC-CCEEEEeEEEEEEEcCCE---EEEEE-CCc--EEEcCEEEECC
Confidence               0000  00     01245567888888888777 788888888888776653   33444 554  46799999999


Q ss_pred             CCcccc
Q 010623          220 GCFSNL  225 (506)
Q Consensus       220 G~~S~v  225 (506)
                      |.++..
T Consensus       121 G~~~~~  126 (333)
T 1vdc_A          121 GAVAKR  126 (333)
T ss_dssp             CEEECC
T ss_pred             CCCcCC
Confidence            998754

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.96  E-value=1.9e-09  Score=105.62  Aligned_cols=117  Identities=26%  Similarity=0.298  Sum_probs=77.5

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEE
Q 010623           57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFK  136 (506)
Q Consensus        57 ~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  136 (506)
                      ++..+||+||||||+|+++|+.|++.|++|+|+|+..     ..|. +...                 .  ..       
T Consensus        11 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-----~gg~-~~~~-----------------~--~~-------   58 (335)
T 2a87_A           11 HHPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTS-----FGGA-LMTT-----------------T--DV-------   58 (335)
T ss_dssp             CCCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSS-----CSCG-GGSC-----------------S--CB-------
T ss_pred             cCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-----CCCc-eecc-----------------c--hh-------
Confidence            3456899999999999999999999999999999752     1111 1000                 0  00       


Q ss_pred             CCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEE-EeCCccEEEEEcCeE
Q 010623          137 DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQY-KTKAGEELTAYAPLT  215 (506)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v-~~~~G~~~~i~a~~v  215 (506)
                            ..++  .     ....+.+..+...|.+.+.+. +++++.++++++.. ++.   +++ ...+|+  ++++|.|
T Consensus        59 ------~~~~--~-----~~~~~~~~~~~~~l~~~~~~~-~v~~~~~~v~~i~~-~~~---~~v~~~~~g~--~~~~d~l  118 (335)
T 2a87_A           59 ------ENYP--G-----FRNGITGPELMDEMREQALRF-GADLRMEDVESVSL-HGP---LKSVVTADGQ--THRARAV  118 (335)
T ss_dssp             ------CCST--T-----CTTCBCHHHHHHHHHHHHHHT-TCEEECCCEEEEEC-SSS---SEEEEETTSC--EEEEEEE
T ss_pred             ------hhcC--C-----CCCCCCHHHHHHHHHHHHHHc-CCEEEEeeEEEEEe-CCc---EEEEEeCCCC--EEEeCEE
Confidence                  0000  0     001234556777888777776 78888888888876 332   233 456675  3669999


Q ss_pred             EeecCCcccc
Q 010623          216 IVCDGCFSNL  225 (506)
Q Consensus       216 V~AdG~~S~v  225 (506)
                      |.|+|.++..
T Consensus       119 viAtG~~~~~  128 (335)
T 2a87_A          119 ILAMGAAARY  128 (335)
T ss_dssp             EECCCEEECC
T ss_pred             EECCCCCccC
Confidence            9999987643

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.96  E-value=2.2e-09  Score=103.96  Aligned_cols=119  Identities=16%  Similarity=0.269  Sum_probs=74.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG  138 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (506)
                      ..|||+||||||||++||+.|+++|++|+|+|+......       .+++.           +..  ...     ++   
T Consensus         3 ~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~-------~~~G~-----------~~~--~~~-----i~---   54 (314)
T 4a5l_A            3 NIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGV-------AAGGQ-----------LTT--TTI-----IE---   54 (314)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGC-------CTTCG-----------GGG--SSE-----EC---
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc-------ccCCC-----------cCC--hHH-----hh---
Confidence            358999999999999999999999999999998742111       01110           000  000     00   


Q ss_pred             ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                           .++  .+.     ..+...++...+.+.+.+. ++.+...++.....+.+..   .+.+.++.  ++.+|.||.|
T Consensus        55 -----~~~--g~~-----~~i~~~~l~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~---~~~~~~~~--~~~~~~liiA  116 (314)
T 4a5l_A           55 -----NFP--GFP-----NGIDGNELMMNMRTQSEKY-GTTIITETIDHVDFSTQPF---KLFTEEGK--EVLTKSVIIA  116 (314)
T ss_dssp             -----CST--TCT-----TCEEHHHHHHHHHHHHHHT-TCEEECCCEEEEECSSSSE---EEEETTCC--EEEEEEEEEC
T ss_pred             -----hcc--CCc-----ccCCHHHHHHHHHHHHhhc-CcEEEEeEEEEeecCCCce---EEEECCCe--EEEEeEEEEc
Confidence                 000  000     1134456777777777777 6777777777766655532   23345665  4669999999


Q ss_pred             cCCcc
Q 010623          219 DGCFS  223 (506)
Q Consensus       219 dG~~S  223 (506)
                      +|...
T Consensus       117 TG~~~  121 (314)
T 4a5l_A          117 TGATA  121 (314)
T ss_dssp             CCEEE
T ss_pred             ccccc
Confidence            99754

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.94  E-value=1.3e-09  Score=113.62  Aligned_cols=135  Identities=16%  Similarity=0.161  Sum_probs=82.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHH-HCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623           60 DADVIVVGAGVAGAALANTLA-KDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG  138 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La-~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (506)
                      ++||+|||||++|+++|+.|+ +.|++|+|+|+++.....    ... +     ..-|..               .....
T Consensus         8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGt----w~~-~-----~ypg~~---------------~d~~s   62 (540)
T 3gwf_A            8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGT----WYW-N-----RYPGAL---------------SDTES   62 (540)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTH----HHH-C-----CCTTCE---------------EEEEG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCc----ccc-c-----CCCCce---------------ecCCc
Confidence            589999999999999999999 999999999998643210    000 0     000000               00000


Q ss_pred             ceeeeecCCcC---CCCCcccccccchHHHHHHHHHHHcCCCE--EEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEc
Q 010623          139 NRTQISYPLEK---FHSDVAGRGFHNGRFVQRLREKAASLPNV--RLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYA  212 (506)
Q Consensus       139 ~~~~~~~~~~~---~~~~~~~~~i~~~~l~~~L~~~~~~~~~v--~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a  212 (506)
                      ..  ..+....   ..........++.++.+.|.+.+.+. ++  .++++ +|+++..+++.. .+++...+|+  +++|
T Consensus        63 ~~--~~~~~~~~~~~~~~~~~~~~~~~ei~~~l~~~~~~~-g~~~~i~~~~~V~~i~~~~~~~-~~~V~~~~G~--~i~a  136 (540)
T 3gwf_A           63 HL--YRFSFDRDLLQESTWKTTYITQPEILEYLEDVVDRF-DLRRHFKFGTEVTSALYLDDEN-LWEVTTDHGE--VYRA  136 (540)
T ss_dssp             GG--SSCCSCHHHHHHCCCSBSEEEHHHHHHHHHHHHHHT-TCGGGEEESCCEEEEEEETTTT-EEEEEETTSC--EEEE
T ss_pred             ce--eeeccccccccCCCCcccCCCHHHHHHHHHHHHHHc-CCcceeEeccEEEEEEEeCCCC-EEEEEEcCCC--EEEe
Confidence            00  0000000   00000112346778888898888887 44  56666 599988765421 2456677887  4679


Q ss_pred             CeEEeecCCcccc
Q 010623          213 PLTIVCDGCFSNL  225 (506)
Q Consensus       213 ~~vV~AdG~~S~v  225 (506)
                      |+||.|+|.+|.-
T Consensus       137 d~lV~AtG~~s~p  149 (540)
T 3gwf_A          137 KYVVNAVGLLSAI  149 (540)
T ss_dssp             EEEEECCCSCCSB
T ss_pred             CEEEECCcccccC
Confidence            9999999998754

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.94  E-value=3.9e-09  Score=108.19  Aligned_cols=151  Identities=13%  Similarity=0.170  Sum_probs=83.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHH---CCCc---EEEEecCCCCCCccccccccc--chHHHHHHhCchhHHhhcccceecce
Q 010623           61 ADVIVVGAGVAGAALANTLAK---DGRR---VHVIERDLSEPDRIVGELLQP--GGYLKLIELGLEDCVEQIDAQRVFGY  132 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~---~G~~---v~vvE~~~~~~~~~~g~~l~~--~~~~~l~~~g~~~~~~~~~~~~~~~~  132 (506)
                      .||+||||||+|+++|..|++   .|++   |+|+|+.+....    .....  .+.   ...|+..     ........
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG----~w~~~~~~g~---~~~g~~~-----~~~~y~~l   70 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGG----QWNYTWRTGL---DENGEPV-----HSSMYRYL   70 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCG----GGSCCSCCSB---CTTSSBC-----CCCCCTTC
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCC----EeecCCCCCc---cccCCCC-----cCccccch
Confidence            699999999999999999999   9999   999999864321    10000  000   0011100     00000000


Q ss_pred             EEEECCceeeeec---CCcCCCCCcccccccchHHHHHHHHHHHcCCCEE--EEec-eEEEEEeeCC-eEEEEEEEe-CC
Q 010623          133 ALFKDGNRTQISY---PLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVR--LEQG-TVTSLLEEKG-TIKGVQYKT-KA  204 (506)
Q Consensus       133 ~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~--i~~~-~v~~~~~~~~-~v~~v~v~~-~~  204 (506)
                        ..+.......+   ++...........+++..+.+.|.+.+.+. ++.  ++++ +|+++..+++ +...|++.+ .+
T Consensus        71 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~  147 (464)
T 2xve_A           71 --WSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKA-GVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTT  147 (464)
T ss_dssp             --BCSSCGGGTCBTTBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHH-TCGGGEECSEEEEEEEEETTTTEEEEEEEETTT
T ss_pred             --hhcCChhhcccCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHc-CCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCC
Confidence              00000000000   000000000122356778888888888876 555  6666 5999987654 122355544 24


Q ss_pred             ccEEEEEcCeEEeecCCcccch
Q 010623          205 GEELTAYAPLTIVCDGCFSNLR  226 (506)
Q Consensus       205 G~~~~i~a~~vV~AdG~~S~vR  226 (506)
                      |+..++.+|.||.|+|.+|.-+
T Consensus       148 g~~~~~~~d~VVvAtG~~s~p~  169 (464)
T 2xve_A          148 DTIYSEEFDYVVCCTGHFSTPY  169 (464)
T ss_dssp             TEEEEEEESEEEECCCSSSSBC
T ss_pred             CceEEEEcCEEEECCCCCCCCc
Confidence            6545688999999999877544

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=98.94  E-value=4.1e-09  Score=107.01  Aligned_cols=35  Identities=34%  Similarity=0.524  Sum_probs=32.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE   95 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~   95 (506)
                      +||+|||||++|+++|+.|+++|++|+|+|+++..
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~   36 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERL   36 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence            79999999999999999999999999999997643

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.92  E-value=2.1e-09  Score=104.46  Aligned_cols=115  Identities=14%  Similarity=0.187  Sum_probs=76.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG  138 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (506)
                      +.+||+||||||+|+++|+.|++.|++|+|+|+..     ..|. +...                 .  ..         
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-----~gg~-~~~~-----------------~--~~---------   49 (320)
T 1trb_A            4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGME-----KGGQ-LTTT-----------------T--EV---------   49 (320)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS-----TTGG-GGGC-----------------S--BC---------
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEccCC-----CCce-Eecc-----------------h--hh---------
Confidence            35899999999999999999999999999999652     1111 1000                 0  00         


Q ss_pred             ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                          ..++  .+     ...+.+..+...+.+.+.+. +++++.++++++..+++.+   ++ ..+|+  ++.+|+||.|
T Consensus        50 ----~~~~--~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~---~v-~~~~~--~~~~~~lv~A  111 (320)
T 1trb_A           50 ----ENWP--GD-----PNDLTGPLLMERMHEHATKF-ETEIIFDHINKVDLQNRPF---RL-NGDNG--EYTCDALIIA  111 (320)
T ss_dssp             ----CCST--TC-----CSSCBHHHHHHHHHHHHHHT-TCEEECCCEEEEECSSSSE---EE-EESSC--EEEEEEEEEC
T ss_pred             ----hhCC--CC-----CCCCCHHHHHHHHHHHHHHC-CCEEEEeeeeEEEecCCEE---EE-EeCCC--EEEcCEEEEC
Confidence                0000  00     01134556777777777776 7888888888887766543   33 34555  3669999999


Q ss_pred             cCCcccc
Q 010623          219 DGCFSNL  225 (506)
Q Consensus       219 dG~~S~v  225 (506)
                      +|.++..
T Consensus       112 tG~~~~~  118 (320)
T 1trb_A          112 TGASARY  118 (320)
T ss_dssp             CCEEECC
T ss_pred             CCCCcCC
Confidence            9987643

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.92  E-value=8.8e-09  Score=105.66  Aligned_cols=151  Identities=17%  Similarity=0.196  Sum_probs=82.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC-----CcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEE
Q 010623           60 DADVIVVGAGVAGAALANTLAKDG-----RRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYAL  134 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G-----~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~  134 (506)
                      .+||+||||||+|+++|..|+++|     ++|+|+|+.+...... +..+....+.    ......+..... +...+.+
T Consensus        30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~-~~~~~~~~~~----~~~~~~l~~~~~-p~~~~~~  103 (463)
T 3s5w_A           30 VHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHG-NTLVSQSELQ----ISFLKDLVSLRN-PTSPYSF  103 (463)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSG-GGCCSSCBCS----SCTTSSSSTTTC-TTCTTSH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcC-CCCCCCCcCC----cchhhccccccC-CCCCCCh
Confidence            579999999999999999999999     9999999997543211 1000000000    000000000000 0000000


Q ss_pred             --E--ECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEee--CCeEEEEEEEeC--Cc
Q 010623          135 --F--KDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEE--KGTIKGVQYKTK--AG  205 (506)
Q Consensus       135 --~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~--~~~v~~v~v~~~--~G  205 (506)
                        |  ..+..  ..+.      ........+..+...|...+.+. ++.+++++ |+++..+  +++...+++...  +|
T Consensus       104 ~~~l~~~~~~--~~~~------~~~~~~~~~~~~~~~l~~~~~~~-~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g  174 (463)
T 3s5w_A          104 VNYLHKHDRL--VDFI------NLGTFYPCRMEFNDYLRWVASHF-QEQSRYGEEVLRIEPMLSAGQVEALRVISRNADG  174 (463)
T ss_dssp             HHHHHHTTCH--HHHH------HHCCSCCBHHHHHHHHHHHHTTC-TTTEEESEEEEEEEEEEETTEEEEEEEEEEETTS
T ss_pred             hHhhhhcCce--eecc------cccCCCCCHHHHHHHHHHHHHHc-CCeEEeCCEEEEEEEecCCCceEEEEEEEecCCC
Confidence              0  00000  0000      00011235667888888888777 56677774 9888765  244433455443  45


Q ss_pred             cEEEEEcCeEEeecCCcccc
Q 010623          206 EELTAYAPLTIVCDGCFSNL  225 (506)
Q Consensus       206 ~~~~i~a~~vV~AdG~~S~v  225 (506)
                      ++.++++|.||.|+|....+
T Consensus       175 ~~~~~~~d~lVlAtG~~p~~  194 (463)
T 3s5w_A          175 EELVRTTRALVVSPGGTPRI  194 (463)
T ss_dssp             CEEEEEESEEEECCCCEECC
T ss_pred             ceEEEEeCEEEECCCCCCCC
Confidence            55568899999999985543

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.91  E-value=3.3e-09  Score=102.60  Aligned_cols=114  Identities=25%  Similarity=0.325  Sum_probs=76.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      ++||+||||||+|+++|+.|++.|++|+|+|+..      .|.....        .++.                     
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~------gG~~~~~--------~~~~---------------------   45 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGERF------GGQILDT--------VDIE---------------------   45 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSST------TGGGGGC--------CEEC---------------------
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC------Cceeccc--------cccc---------------------
Confidence            3799999999999999999999999999998641      1111100        0000                     


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeC--CeEEEEEEEeCCccEEEEEcCeEE
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEK--GTIKGVQYKTKAGEELTAYAPLTI  216 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~--~~v~~v~v~~~~G~~~~i~a~~vV  216 (506)
                          .+.     .   ....++..+...+.+.+.+. +++++.+ +|+.+..+.  ++  .+.+..++|++  +++|.||
T Consensus        46 ----~~~-----~---~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~~~--~~~v~~~~g~~--~~~~~lv  108 (310)
T 1fl2_A           46 ----NYI-----S---VPKTEGQKLAGALKVHVDEY-DVDVIDSQSASKLIPAAVEGG--LHQIETASGAV--LKARSII  108 (310)
T ss_dssp             ----CBT-----T---BSSEEHHHHHHHHHHHHHTS-CEEEECSCCEEEEECCSSTTC--CEEEEETTSCE--EEEEEEE
T ss_pred             ----ccc-----C---cCCCCHHHHHHHHHHHHHHc-CCeEEccCEEEEEEecccCCc--eEEEEECCCCE--EEeCEEE
Confidence                000     0   00124456777888888776 7999988 699887542  21  24455667753  6699999


Q ss_pred             eecCCcccc
Q 010623          217 VCDGCFSNL  225 (506)
Q Consensus       217 ~AdG~~S~v  225 (506)
                      .|+|.++..
T Consensus       109 ~AtG~~~~~  117 (310)
T 1fl2_A          109 VATGAKWRN  117 (310)
T ss_dssp             ECCCEEECC
T ss_pred             ECcCCCcCC
Confidence            999987643

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.88  E-value=2.8e-09  Score=111.28  Aligned_cols=135  Identities=23%  Similarity=0.261  Sum_probs=82.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG  138 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (506)
                      .++||+|||||++|+++|+.|++.|++|+|+|+++.....    ....      +.-|..-.+..      ..+      
T Consensus        20 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGt----w~~~------~ypg~~~dv~s------~~y------   77 (549)
T 4ap3_A           20 TSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGV----WYWN------RYPGARCDVES------IDY------   77 (549)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTH----HHHC------CCTTCBCSSCT------TTS------
T ss_pred             CCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCc----cccC------CCCCceeCCCc------hhc------
Confidence            4689999999999999999999999999999998643210    0000      00010000000      000      


Q ss_pred             ceeeeecCCcC---CCCCcccccccchHHHHHHHHHHHcCCCE--EEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEc
Q 010623          139 NRTQISYPLEK---FHSDVAGRGFHNGRFVQRLREKAASLPNV--RLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYA  212 (506)
Q Consensus       139 ~~~~~~~~~~~---~~~~~~~~~i~~~~l~~~L~~~~~~~~~v--~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a  212 (506)
                           .+.+..   ..........++.++...+.+.+.+. ++  .++++ +|+++..+++.. .+++...+|++  ++|
T Consensus        78 -----~~~f~~~~~~~~~~~~~~~~~~ei~~yl~~~~~~~-g~~~~i~~~~~V~~i~~~~~~~-~w~V~~~~G~~--i~a  148 (549)
T 4ap3_A           78 -----SYSFSPELEQEWNWSEKYATQPEILAYLEHVADRF-DLRRDIRFDTRVTSAVLDEEGL-RWTVRTDRGDE--VSA  148 (549)
T ss_dssp             -----SCCSCHHHHHHCCCSSSSCBHHHHHHHHHHHHHHT-TCGGGEECSCCEEEEEEETTTT-EEEEEETTCCE--EEE
T ss_pred             -----ccccccccccCCCCccCCCCHHHHHHHHHHHHHHc-CCCccEEECCEEEEEEEcCCCC-EEEEEECCCCE--EEe
Confidence                 000000   00000112346677888888888887 44  56666 599998765421 24566778874  679


Q ss_pred             CeEEeecCCccc
Q 010623          213 PLTIVCDGCFSN  224 (506)
Q Consensus       213 ~~vV~AdG~~S~  224 (506)
                      |+||.|+|..|.
T Consensus       149 d~lV~AtG~~s~  160 (549)
T 4ap3_A          149 RFLVVAAGPLSN  160 (549)
T ss_dssp             EEEEECCCSEEE
T ss_pred             CEEEECcCCCCC
Confidence            999999998764

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.88  E-value=5.5e-09  Score=103.65  Aligned_cols=134  Identities=18%  Similarity=0.195  Sum_probs=78.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCCCccccccc-ccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDLSEPDRIVGELL-QPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD  137 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~~~~~~~~g~~l-~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  137 (506)
                      ++||+|||||++|+++|..|++.|+ +|+|+|+++ ..    +... .+....      +.   .........++     
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~G----g~~~~~~~~~~------~~---~~~~~~~~~g~-----   64 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VG----HSFKHWPKSTR------TI---TPSFTSNGFGM-----   64 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TT----HHHHTSCTTCB------CS---SCCCCCGGGTC-----
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CC----CccccCccccc------cc---CcchhcccCCc-----
Confidence            5899999999999999999999999 999999985 11    1000 000000      00   00000000000     


Q ss_pred             CceeeeecCCcCCCCC----cccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEc
Q 010623          138 GNRTQISYPLEKFHSD----VAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYA  212 (506)
Q Consensus       138 ~~~~~~~~~~~~~~~~----~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a  212 (506)
                           ..+........    .....+++..+...+.+.+.+. ++.++.++ |+++..+++.   +.+.+.+|+   +.+
T Consensus        65 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-gv~i~~~~~v~~i~~~~~~---~~v~~~~g~---~~~  132 (369)
T 3d1c_A           65 -----PDMNAISMDTSPAFTFNEEHISGETYAEYLQVVANHY-ELNIFENTVVTNISADDAY---YTIATTTET---YHA  132 (369)
T ss_dssp             -----CCTTCSSTTCCHHHHHCCSSCBHHHHHHHHHHHHHHT-TCEEECSCCEEEEEECSSS---EEEEESSCC---EEE
T ss_pred             -----hhhhhccccccccccccccCCCHHHHHHHHHHHHHHc-CCeEEeCCEEEEEEECCCe---EEEEeCCCE---EEe
Confidence                 00000000000    0011234556777788777777 67888875 9999877653   445556663   669


Q ss_pred             CeEEeecCCccc
Q 010623          213 PLTIVCDGCFSN  224 (506)
Q Consensus       213 ~~vV~AdG~~S~  224 (506)
                      |.||.|+|.++.
T Consensus       133 d~vVlAtG~~~~  144 (369)
T 3d1c_A          133 DYIFVATGDYNF  144 (369)
T ss_dssp             EEEEECCCSTTS
T ss_pred             CEEEECCCCCCc
Confidence            999999999863

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.87  E-value=6.5e-09  Score=107.18  Aligned_cols=38  Identities=32%  Similarity=0.494  Sum_probs=34.2

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        57 ~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      |+.++||+|||||++|+++|+.|++.|++|+|+|+++.
T Consensus         3 m~~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~   40 (482)
T 1ojt_A            3 ADAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKT   40 (482)
T ss_dssp             SEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            34468999999999999999999999999999999754

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.85  E-value=4e-09  Score=108.25  Aligned_cols=145  Identities=18%  Similarity=0.127  Sum_probs=82.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCccccccccc---chHHHHHHhCchhHHhhcccceecceEEEE
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQP---GGYLKLIELGLEDCVEQIDAQRVFGYALFK  136 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~---~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  136 (506)
                      ++||+||||||+|+++|+.|++.|++|+|+|++. .    .|..++.   .+...+...++.+.+....  ...++.  .
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~~-~----gG~~~~~g~~psk~ll~~~~~~~~~~~~~--~~~g~~--~   73 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKY-W----GGVCLNVGCIPSKALLRNAELVHIFTKDA--KAFGIS--G   73 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC-T----THHHHHHSHHHHHHHHHHHHHHHHHHHHT--TTTTEE--E
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC-C----CCcccccCchhhHHHHHHHHHHHHHHHHH--HhcCCC--C
Confidence            4899999999999999999999999999999972 1    1211221   1223344444444433100  111221  1


Q ss_pred             CCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623          137 DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI  216 (506)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV  216 (506)
                      ..   ...+.  ... ......  ...+...+.+.+.+. +++++.++.+.  .+++   .+++.+.+|+..++++|.||
T Consensus        74 ~~---~~~~~--~~~-~~~~~~--~~~l~~~l~~~~~~~-gv~~~~g~~~~--id~~---~v~V~~~~G~~~~~~~d~lV  139 (464)
T 2a8x_A           74 EV---TFDYG--IAY-DRSRKV--AEGRVAGVHFLMKKN-KITEIHGYGTF--ADAN---TLLVDLNDGGTESVTFDNAI  139 (464)
T ss_dssp             CC---EECHH--HHH-HHHHHH--HHHHHHHHHHHHHHT-TCEEECEEEEE--SSSS---EEEEEETTSCCEEEEEEEEE
T ss_pred             CC---ccCHH--HHH-HHHHHH--HHHHHHHHHHHHHhC-CCEEEEeEEEE--ecCC---eEEEEeCCCceEEEEcCEEE
Confidence            00   01110  000 000000  123455566666665 88888887433  2334   35566677743457899999


Q ss_pred             eecCCcccchh
Q 010623          217 VCDGCFSNLRR  227 (506)
Q Consensus       217 ~AdG~~S~vR~  227 (506)
                      .|||.++....
T Consensus       140 iAtG~~~~~~~  150 (464)
T 2a8x_A          140 IATGSSTRLVP  150 (464)
T ss_dssp             ECCCEEECCCT
T ss_pred             ECCCCCCCCCC
Confidence            99999885543

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.84  E-value=9e-09  Score=105.82  Aligned_cols=146  Identities=14%  Similarity=0.111  Sum_probs=78.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      ++||+||||||+|+++|..|++.|++|+|+|+++............| ....+....+.+.+...  ....+...  ...
T Consensus         6 ~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~p-~k~l~~~~~~~~~~~~~--~~~~g~~~--~~~   80 (470)
T 1dxl_A            6 ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIP-SKALLHSSHMYHEAKHS--FANHGVKV--SNV   80 (470)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHH-HHHHHHHHHHHHHHHHT--HHHHTEEE--SCE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCcCccc-hHHHHHHHHHHHHHHHH--HHhcCccc--CCC
Confidence            58999999999999999999999999999999864322111000011 11111111122222110  00011110  000


Q ss_pred             eeeeecCCcCCCCCccccccc-----chHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCe
Q 010623          140 RTQISYPLEKFHSDVAGRGFH-----NGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPL  214 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~-----~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~  214 (506)
                        ...+          ...+.     ...+...+.+.+.+. +++++.++++.+  +.+   .+++.+.+|+..++++|.
T Consensus        81 --~~~~----------~~~~~~~~~~~~~l~~~~~~~~~~~-gv~~~~g~~~~~--~~~---~~~v~~~~G~~~~i~~d~  142 (470)
T 1dxl_A           81 --EIDL----------AAMMGQKDKAVSNLTRGIEGLFKKN-KVTYVKGYGKFV--SPS---EISVDTIEGENTVVKGKH  142 (470)
T ss_dssp             --EECH----------HHHHHHHHHHHHHHHHHHHHHHHHH-TCEEEESCEEEE--ETT---EEEECCSSSCCEEEECSE
T ss_pred             --ccCH----------HHHHHHHHHHHHHHHHHHHHHHHhC-CCEEEEeEEEEe--cCC---EEEEEeCCCceEEEEcCE
Confidence              0000          00111     112334445555555 788888875433  334   355656677434578999


Q ss_pred             EEeecCCcccchhh
Q 010623          215 TIVCDGCFSNLRRS  228 (506)
Q Consensus       215 vV~AdG~~S~vR~~  228 (506)
                      ||.|+|.++.+...
T Consensus       143 lIiAtGs~p~~p~~  156 (470)
T 1dxl_A          143 IIIATGSDVKSLPG  156 (470)
T ss_dssp             EEECCCEEECCBTT
T ss_pred             EEECCCCCCCCCCC
Confidence            99999998765443

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.83  E-value=7.4e-09  Score=108.06  Aligned_cols=139  Identities=18%  Similarity=0.119  Sum_probs=80.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG  138 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (506)
                      .++||+|||||++|+++|+.|++.|++|+|+|+++.....-.-. -.|..     ............         +...
T Consensus         8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~-~yPg~-----~~d~~~~~y~~~---------f~~~   72 (545)
T 3uox_A            8 PALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWN-RYPGC-----RLDTESYAYGYF---------ALKG   72 (545)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHC-CCTTC-----BCSSCHHHHCHH---------HHTT
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccC-CCCce-----eecCchhhcccc---------cCcc
Confidence            35899999999999999999999999999999986432110000 00000     000000000000         0000


Q ss_pred             ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCE--EEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeE
Q 010623          139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNV--RLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLT  215 (506)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v--~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~v  215 (506)
                             ....  ........++.++...+.+.+.+. ++  .++++ +|+++..+++.. .+++++++|+  +++||+|
T Consensus        73 -------~~~~--~~~~~~~~~~~ei~~yl~~~~~~~-~l~~~i~~~~~V~~~~~~~~~~-~w~V~~~~G~--~~~ad~l  139 (545)
T 3uox_A           73 -------IIPE--WEWSENFASQPEMLRYVNRAADAM-DVRKHYRFNTRVTAARYVENDR-LWEVTLDNEE--VVTCRFL  139 (545)
T ss_dssp             -------SSTT--CCCSBSSCBHHHHHHHHHHHHHHH-TCGGGEECSCCEEEEEEEGGGT-EEEEEETTTE--EEEEEEE
T ss_pred             -------cccC--CCccccCCCHHHHHHHHHHHHHHc-CCcCcEEECCEEEEEEEeCCCC-EEEEEECCCC--EEEeCEE
Confidence                   0000  000112345667778888777776 33  55666 588887654321 2556677886  4679999


Q ss_pred             EeecCCcccc
Q 010623          216 IVCDGCFSNL  225 (506)
Q Consensus       216 V~AdG~~S~v  225 (506)
                      |.|+|..|.-
T Consensus       140 V~AtG~~s~p  149 (545)
T 3uox_A          140 ISATGPLSAS  149 (545)
T ss_dssp             EECCCSCBC-
T ss_pred             EECcCCCCCC
Confidence            9999987743

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.80  E-value=2.7e-09  Score=109.99  Aligned_cols=145  Identities=17%  Similarity=0.108  Sum_probs=77.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCccccccccc---chHHHHHHhCchhHHhhcccceecceEEE
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQP---GGYLKLIELGLEDCVEQIDAQRVFGYALF  135 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~---~~~~~l~~~g~~~~~~~~~~~~~~~~~~~  135 (506)
                      .++||+||||||+|+++|+.|++.|++|+|+|+++...    |..++.   .+...+...+..+.+...  ....++..+
T Consensus         4 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~G----G~~~~~g~~psk~l~~~~~~~~~~~~~--~~~~gi~~~   77 (478)
T 1v59_A            4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLG----GTCLNVGCIPSKALLNNSHLFHQMHTE--AQKRGIDVN   77 (478)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSS----HHHHHHSHHHHHHHHHHHHHHHHHHHT--SGGGTEEEC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcC----CccceeccHHHHHHHHHHHHHHHHHHH--HHhcCcccC
Confidence            35899999999999999999999999999999965321    211111   122233333333333210  011122211


Q ss_pred             ECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEE------
Q 010623          136 KDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELT------  209 (506)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~------  209 (506)
                       ...  ...+.  ... .....  ....+...+.+.+.+. +++++.++.+..  +++   .+++...+|+..+      
T Consensus        78 -~~~--~~~~~--~~~-~~~~~--~~~~l~~~~~~~~~~~-gv~~~~g~~~~~--~~~---~v~V~~~~G~~~~~~~~~~  143 (478)
T 1v59_A           78 -GDI--KINVA--NFQ-KAKDD--AVKQLTGGIELLFKKN-KVTYYKGNGSFE--DET---KIRVTPVDGLEGTVKEDHI  143 (478)
T ss_dssp             -SCE--EECHH--HHH-HHHHH--HHHHHHHHHHHHHHHT-TCEEEESEEEES--SSS---EEEEECCTTCTTCCSSCEE
T ss_pred             -CCC--ccCHH--HHH-HHHHH--HHHHHHHHHHHHHHhC-CCEEEEEEEEEc--cCC---eEEEEecCCCcccccccce
Confidence             000  00000  000 00000  0113344455556655 788888874322  333   3556566662123      


Q ss_pred             EEcCeEEeecCCcc
Q 010623          210 AYAPLTIVCDGCFS  223 (506)
Q Consensus       210 i~a~~vV~AdG~~S  223 (506)
                      +++|.||.|+|.++
T Consensus       144 i~~d~lViAtGs~p  157 (478)
T 1v59_A          144 LDVKNIIVATGSEV  157 (478)
T ss_dssp             EEEEEEEECCCEEE
T ss_pred             EEeCEEEECcCCCC
Confidence            67999999999876

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=98.80  E-value=1.5e-08  Score=104.34  Aligned_cols=36  Identities=25%  Similarity=0.410  Sum_probs=33.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC--cEEEEecCCCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR--RVHVIERDLSEP   96 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~~~~   96 (506)
                      .||+|||||++||++|+.|+++|.  +|+|+|+++...
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~G   40 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLG   40 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSB
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCC
Confidence            699999999999999999999999  999999986543

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.79  E-value=1.4e-08  Score=104.21  Aligned_cols=134  Identities=22%  Similarity=0.168  Sum_probs=74.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchH---HHHHHhCchhHHhhcccceecceEEE
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGY---LKLIELGLEDCVEQIDAQRVFGYALF  135 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~---~~l~~~g~~~~~~~~~~~~~~~~~~~  135 (506)
                      .++||+||||||+|+++|..|++.|++|+|+||.+...    |...+...+   ..+......+.+.....         
T Consensus         3 ~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~G----G~~~~~gciPsk~l~~~a~~~~~~~~~~~---------   69 (466)
T 3l8k_A            3 LKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELG----GNCLYSGCVPSKTVREVIQTAWRLTNIAN---------   69 (466)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSS----HHHHHHSHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred             ccceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCC----CcccccCCCchHHHHHHHHHHHHHHhccc---------
Confidence            35899999999999999999999999999999875322    111111110   11111111111111100         


Q ss_pred             ECCceeeeecCCcCCCCCcccccccchHH---H--HHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEE
Q 010623          136 KDGNRTQISYPLEKFHSDVAGRGFHNGRF---V--QRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTA  210 (506)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l---~--~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i  210 (506)
                         ......++         ...-....+   .  ..+.+.+.+. ++++..++++.+.  .+   .+.+.+.+|++.++
T Consensus        70 ---~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~~-~v~~~~g~v~~id--~~---~~~V~~~~g~~~~~  131 (466)
T 3l8k_A           70 ---VKIPLDFS---------TVQDRKDYVQELRFKQHKRNMSQYE-TLTFYKGYVKIKD--PT---HVIVKTDEGKEIEA  131 (466)
T ss_dssp             ---SCCCCCHH---------HHHHHHHHHHHHHHHHHHHHHTTCT-TEEEESEEEEEEE--TT---EEEEEETTSCEEEE
T ss_pred             ---CCCCcCHH---------HHHHHHHhheeccccchHHHHHHhC-CCEEEEeEEEEec--CC---eEEEEcCCCcEEEE
Confidence               00000000         000001112   2  3333444444 8998888776664  33   35566778876557


Q ss_pred             EcCeEEeecCCcc
Q 010623          211 YAPLTIVCDGCFS  223 (506)
Q Consensus       211 ~a~~vV~AdG~~S  223 (506)
                      .+|.||.|+|...
T Consensus       132 ~~d~lviAtG~~p  144 (466)
T 3l8k_A          132 ETRYMIIASGAET  144 (466)
T ss_dssp             EEEEEEECCCEEE
T ss_pred             ecCEEEECCCCCc
Confidence            8999999999743

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.78  E-value=3.5e-08  Score=95.50  Aligned_cols=34  Identities=32%  Similarity=0.507  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      .+|||+||||||+|+++|+.|++.|++|+|+||.
T Consensus         5 ~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~   38 (312)
T 4gcm_A            5 IDFDIAIIGAGPAGMTAAVYASRANLKTVMIERG   38 (312)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Confidence            3699999999999999999999999999999986

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.78  E-value=2.1e-08  Score=104.33  Aligned_cols=114  Identities=25%  Similarity=0.328  Sum_probs=77.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG  138 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (506)
                      ..+||+||||||+|+++|+.|++.|++|+|+|+..      .|.....        .++.                    
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~------GG~~~~~--------~~~~--------------------  256 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERF------GGQVLDT--------VDIE--------------------  256 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSST------TGGGTTC--------SCBC--------------------
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCeEEEEECCC------CCccccc--------cccc--------------------
Confidence            46899999999999999999999999999998642      1111100        0000                    


Q ss_pred             ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeC--CeEEEEEEEeCCccEEEEEcCeE
Q 010623          139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEK--GTIKGVQYKTKAGEELTAYAPLT  215 (506)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~--~~v~~v~v~~~~G~~~~i~a~~v  215 (506)
                           .+.     ..   .......+...|.+.+.+. +++++.+ +|+++..+.  ++  .+++...+|++  +++|.|
T Consensus       257 -----~~~-----~~---~~~~~~~l~~~l~~~~~~~-gv~v~~~~~v~~i~~~~~~~~--~~~V~~~~g~~--~~~d~v  318 (521)
T 1hyu_A          257 -----NYI-----SV---PKTEGQKLAGALKAHVSDY-DVDVIDSQSASKLVPAATEGG--LHQIETASGAV--LKARSI  318 (521)
T ss_dssp             -----CBT-----TB---SSBCHHHHHHHHHHHHHTS-CEEEECSCCEEEEECCSSTTS--CEEEEETTSCE--EEEEEE
T ss_pred             -----ccC-----CC---CCCCHHHHHHHHHHHHHHc-CCEEEcCCEEEEEEeccCCCc--eEEEEECCCCE--EEcCEE
Confidence                 000     00   0124456778888888877 8999988 599987431  21  24455667763  679999


Q ss_pred             EeecCCccc
Q 010623          216 IVCDGCFSN  224 (506)
Q Consensus       216 V~AdG~~S~  224 (506)
                      |.|+|.++.
T Consensus       319 VlAtG~~~~  327 (521)
T 1hyu_A          319 IIATGAKWR  327 (521)
T ss_dssp             EECCCEEEC
T ss_pred             EECCCCCcC
Confidence            999998764

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.77  E-value=4.1e-08  Score=103.95  Aligned_cols=51  Identities=12%  Similarity=0.208  Sum_probs=41.2

Q ss_pred             CEEEEece-EEEEEeeCC--eEEEEEEEe-CCccEEEEEcCeEEeecCCcccchh
Q 010623          177 NVRLEQGT-VTSLLEEKG--TIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNLRR  227 (506)
Q Consensus       177 ~v~i~~~~-v~~~~~~~~--~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~vR~  227 (506)
                      +++++.++ |+++..+++  ++++|++.+ .+|+..+++||.||.|.|.....+-
T Consensus       274 nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~l  328 (623)
T 3pl8_A          274 RFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQL  328 (623)
T ss_dssp             EEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHH
T ss_pred             CEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHH
Confidence            67888885 899987643  788999887 5788788999999999998876543

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.76  E-value=1.2e-07  Score=96.71  Aligned_cols=42  Identities=31%  Similarity=0.464  Sum_probs=37.0

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Q 010623           57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDR   98 (506)
Q Consensus        57 ~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~   98 (506)
                      ++.++||+|||||++||++|..|++.|++|+|+|+++....+
T Consensus         8 ~~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~   49 (453)
T 2bcg_G            8 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGE   49 (453)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGG
T ss_pred             ccccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCcc
Confidence            345689999999999999999999999999999999765543

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.75  E-value=1.4e-07  Score=97.55  Aligned_cols=61  Identities=20%  Similarity=0.251  Sum_probs=46.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccc------------cc---cccchHHHHHHhCchhH
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVG------------EL---LQPGGYLKLIELGLEDC  120 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g------------~~---l~~~~~~~l~~~g~~~~  120 (506)
                      ++||+|||||++||++|+.|++.|++|+|+|+++....+...            ..   ..++..+.++++|+.+.
T Consensus        39 ~~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~l~~lgl~~~  114 (495)
T 2vvm_A           39 PWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWHQSHVWREITRYKMHNA  114 (495)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCCEEEETTEEEECSCCCBCTTSHHHHHHHHHTTCTTC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcceecccCCeeecCCCeEecCccHHHHHHHHHcCCcce
Confidence            489999999999999999999999999999998765433211            11   23445667778887543

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.74  E-value=1.3e-08  Score=105.85  Aligned_cols=37  Identities=32%  Similarity=0.544  Sum_probs=34.0

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        57 ~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ++.++||+||||||+|+++|+.|++.|++|+|+||.+
T Consensus        29 ~~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~   65 (519)
T 3qfa_A           29 KSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVT   65 (519)
T ss_dssp             SSCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence            3457999999999999999999999999999999964

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.74  E-value=1.4e-08  Score=105.07  Aligned_cols=37  Identities=32%  Similarity=0.453  Sum_probs=32.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      ++++||+||||||+|+++|+.|++.|++|+|+||.+.
T Consensus        23 m~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~   59 (491)
T 3urh_A           23 MMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRST   59 (491)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            3469999999999999999999999999999998753

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.74  E-value=3.5e-08  Score=101.51  Aligned_cols=36  Identities=36%  Similarity=0.483  Sum_probs=33.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      .++||+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus         5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~   40 (474)
T 1zmd_A            5 IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNET   40 (474)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            358999999999999999999999999999999854

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.73  E-value=5.4e-08  Score=94.00  Aligned_cols=112  Identities=21%  Similarity=0.376  Sum_probs=74.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEE-EecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHV-IERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG  138 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~v-vE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (506)
                      .+||+|||||++|+++|..|+++|++|+| +||.. .    .|......               .               
T Consensus         4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~~-~----gG~~~~~~---------------~---------------   48 (315)
T 3r9u_A            4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGM-P----GGQITSSS---------------E---------------   48 (315)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECSSS-T----TGGGGGCS---------------C---------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCC-C----Cceeeeec---------------e---------------
Confidence            48999999999999999999999999999 99942 1    11111000               0               


Q ss_pred             ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeC--CeEEEEEEEeCCccEEEEEcCeEE
Q 010623          139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEK--GTIKGVQYKTKAGEELTAYAPLTI  216 (506)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~--~~v~~v~v~~~~G~~~~i~a~~vV  216 (506)
                         ...++.       ....+...++...+.+.+.+. +++++.++|+++ .++  +.+. +.+.  ++.  ++++|.||
T Consensus        49 ---~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~v~~i-~~~~~~~~~-v~~~--~~~--~~~~d~lv  111 (315)
T 3r9u_A           49 ---IENYPG-------VAQVMDGISFMAPWSEQCMRF-GLKHEMVGVEQI-LKNSDGSFT-IKLE--GGK--TELAKAVI  111 (315)
T ss_dssp             ---BCCSTT-------CCSCBCHHHHHHHHHHHHTTT-CCEEECCCEEEE-EECTTSCEE-EEET--TSC--EEEEEEEE
T ss_pred             ---eccCCC-------CCCCCCHHHHHHHHHHHHHHc-CcEEEEEEEEEE-ecCCCCcEE-EEEe--cCC--EEEeCEEE
Confidence               000000       001234567778888888887 788888889888 655  4322 2232  222  57799999


Q ss_pred             eecCCcc
Q 010623          217 VCDGCFS  223 (506)
Q Consensus       217 ~AdG~~S  223 (506)
                      .|+|...
T Consensus       112 lAtG~~~  118 (315)
T 3r9u_A          112 VCTGSAP  118 (315)
T ss_dssp             ECCCEEE
T ss_pred             EeeCCCC
Confidence            9999744

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.73  E-value=1.8e-08  Score=101.62  Aligned_cols=110  Identities=20%  Similarity=0.241  Sum_probs=70.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHH---CCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623           61 ADVIVVGAGVAGAALANTLAK---DGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD  137 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~---~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  137 (506)
                      .||+|||||++|+++|..|++   .|++|+|+|+++...       ..+..         .    ..           ..
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~-------~~~~~---------~----~~-----------~~   50 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSY-------FRPAL---------P----HV-----------AI   50 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEE-------ECCSS---------C----CC-----------CS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCce-------eccch---------h----hc-----------cc
Confidence            379999999999999999999   899999999986210       00000         0    00           00


Q ss_pred             CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEe
Q 010623          138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV  217 (506)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~  217 (506)
                      +.                   ....++...+.+.+.+. +++++.++|+++..++..   |++.+.+++..++++|.||.
T Consensus        51 ~~-------------------~~~~~~~~~~~~~~~~~-gv~~~~~~v~~i~~~~~~---V~~~~g~~~~~~~~~d~lVi  107 (409)
T 3h8l_A           51 GV-------------------RDVDELKVDLSEALPEK-GIQFQEGTVEKIDAKSSM---VYYTKPDGSMAEEEYDYVIV  107 (409)
T ss_dssp             SC-------------------CCCCCEEEEHHHHTGGG-TCEEEECEEEEEETTTTE---EEEECTTSCEEEEECSEEEE
T ss_pred             CC-------------------cCHHHHHHHHHHHHhhC-CeEEEEeeEEEEeCCCCE---EEEccCCcccceeeCCEEEE
Confidence            00                   00001111233334444 788888889998776653   55555555556688999999


Q ss_pred             ecCCccc
Q 010623          218 CDGCFSN  224 (506)
Q Consensus       218 AdG~~S~  224 (506)
                      |+|....
T Consensus       108 AtG~~~~  114 (409)
T 3h8l_A          108 GIGAHLA  114 (409)
T ss_dssp             CCCCEEC
T ss_pred             CCCCCcC
Confidence            9998654

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.72  E-value=6.4e-08  Score=98.95  Aligned_cols=138  Identities=16%  Similarity=0.145  Sum_probs=76.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccch---HHHHHHhCchhHHhhcccceecceEEEE
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGG---YLKLIELGLEDCVEQIDAQRVFGYALFK  136 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~---~~~l~~~g~~~~~~~~~~~~~~~~~~~~  136 (506)
                      ++||+|||||++|+++|..|++.|++|+|+|+.. ..    |..++...   ...+......+.+....   ..+...  
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~-~g----G~~~~~g~~p~k~l~~~~~~~~~~~~~~---~~g~~~--   72 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN-LG----GVCLNVGCIPSKALISASHRYEQAKHSE---EMGIKA--   72 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TT----HHHHHTSHHHHHHHHHHHHHHHHHHTCG---GGTEEC--
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCC-CC----CcCcCcCchhhHHHHHHHHHHHHHHHHH---hcCccc--
Confidence            4899999999999999999999999999999972 21    11111111   11111111122221110   111110  


Q ss_pred             CCceeeeecCCcCCCCCcccccccc-----hHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEE
Q 010623          137 DGNRTQISYPLEKFHSDVAGRGFHN-----GRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAY  211 (506)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~i~~-----~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~  211 (506)
                      ...  ...          ....+.+     ..+...+.+.+.+. +++++.++++.+  +++   .+++.+.+|+ .+++
T Consensus        73 ~~~--~~~----------~~~~~~~~~~~~~~l~~~~~~~~~~~-gv~~~~g~~~~i--d~~---~v~V~~~~G~-~~i~  133 (455)
T 1ebd_A           73 ENV--TID----------FAKVQEWKASVVKKLTGGVEGLLKGN-KVEIVKGEAYFV--DAN---TVRVVNGDSA-QTYT  133 (455)
T ss_dssp             CSC--EEC----------HHHHHHHHHHHHHHHHHHHHHHHHTT-TCEEEESEEEEE--ETT---EEEEEETTEE-EEEE
T ss_pred             CCC--ccC----------HHHHHHHHHHHHHHHHHHHHHHHHhC-CCEEEEEEEEEc--cCC---eEEEEeCCCc-EEEE
Confidence            000  000          0011111     12444556666665 789988875443  344   3556666663 3578


Q ss_pred             cCeEEeecCCcccch
Q 010623          212 APLTIVCDGCFSNLR  226 (506)
Q Consensus       212 a~~vV~AdG~~S~vR  226 (506)
                      +|.||.|+|..+...
T Consensus       134 ~d~lViATGs~p~~~  148 (455)
T 1ebd_A          134 FKNAIIATGSRPIEL  148 (455)
T ss_dssp             CSEEEECCCEEECCB
T ss_pred             eCEEEEecCCCCCCC
Confidence            999999999876543

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.70  E-value=1.3e-07  Score=98.52  Aligned_cols=38  Identities=37%  Similarity=0.477  Sum_probs=34.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP   96 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~   96 (506)
                      .++||+|||||++||++|..|++.|++|+|+|+++...
T Consensus         3 ~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~G   40 (520)
T 1s3e_A            3 NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVG   40 (520)
T ss_dssp             CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSB
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            45799999999999999999999999999999987653

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.68  E-value=4.1e-08  Score=101.36  Aligned_cols=35  Identities=31%  Similarity=0.431  Sum_probs=32.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .++||+||||||+|+++|+.|++.|.+|+|+||.+
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~   39 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVE   39 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecc
Confidence            46999999999999999999999999999999853

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.67  E-value=5.8e-08  Score=99.65  Aligned_cols=35  Identities=26%  Similarity=0.384  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      ++||+|||||++|+++|+.|++.|++|+|+|+.+.
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~   36 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGA   36 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            48999999999999999999999999999999854

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.67  E-value=5.6e-08  Score=98.64  Aligned_cols=36  Identities=25%  Similarity=0.494  Sum_probs=32.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEecCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGR--RVHVIERDLS   94 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~~   94 (506)
                      +++||+|||||++|+++|..|++.|.  +|+|+|+.+.
T Consensus         3 ~~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~   40 (431)
T 1q1r_A            3 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATV   40 (431)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCS
T ss_pred             CCCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCC
Confidence            45899999999999999999999998  7999998753

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.66  E-value=7.6e-08  Score=98.78  Aligned_cols=34  Identities=35%  Similarity=0.445  Sum_probs=32.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      .++||+|||||++|+++|+.|++.|++|+|+|++
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~   36 (467)
T 1zk7_A            3 PPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG   36 (467)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999999999999999999999999999987

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.66  E-value=6.4e-08  Score=99.75  Aligned_cols=58  Identities=16%  Similarity=0.185  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccch
Q 010623          163 RFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLR  226 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR  226 (506)
                      .+.+.+.+.+++. +++++.+ +|+++..+++++   .+...+|+  ++.+|.||.|+|..+...
T Consensus       233 ~~~~~l~~~l~~~-Gv~i~~~~~V~~i~~~~~~v---~v~~~~g~--~i~aD~Vi~A~G~~p~~~  291 (484)
T 3o0h_A          233 DLRQLLNDAMVAK-GISIIYEATVSQVQSTENCY---NVVLTNGQ--TICADRVMLATGRVPNTT  291 (484)
T ss_dssp             HHHHHHHHHHHHH-TCEEESSCCEEEEEECSSSE---EEEETTSC--EEEESEEEECCCEEECCT
T ss_pred             HHHHHHHHHHHHC-CCEEEeCCEEEEEEeeCCEE---EEEECCCc--EEEcCEEEEeeCCCcCCC
Confidence            4556677777776 7888887 499998876653   45567786  467999999999877653

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.64  E-value=2.3e-08  Score=101.74  Aligned_cols=108  Identities=16%  Similarity=0.233  Sum_probs=69.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHH---CCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623           61 ADVIVVGAGVAGAALANTLAK---DGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD  137 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~---~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  137 (506)
                      .||+|||||++|+++|..|++   .|++|+|+|+++...       ..+......  .|..                   
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~-------~~~~~~~~~--~g~~-------------------   56 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQ-------FVPSNPWVG--VGWK-------------------   56 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEE-------CGGGHHHHH--HTSS-------------------
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCc-------ccCCccccc--cCcc-------------------
Confidence            699999999999999999999   899999999986211       111000000  0000                   


Q ss_pred             CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEe
Q 010623          138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV  217 (506)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~  217 (506)
                                            ...++...+.+.+.+. +++++.++|+++..++..   |  ..++|+  ++.+|+||.
T Consensus        57 ----------------------~~~~~~~~l~~~~~~~-gv~~~~~~v~~id~~~~~---V--~~~~g~--~i~~d~lvi  106 (437)
T 3sx6_A           57 ----------------------ERDDIAFPIRHYVERK-GIHFIAQSAEQIDAEAQN---I--TLADGN--TVHYDYLMI  106 (437)
T ss_dssp             ----------------------CHHHHEEECHHHHHTT-TCEEECSCEEEEETTTTE---E--EETTSC--EEECSEEEE
T ss_pred             ----------------------CHHHHHHHHHHHHHHC-CCEEEEeEEEEEEcCCCE---E--EECCCC--EEECCEEEE
Confidence                                  0111111233344444 788888889999776553   2  356776  367999999


Q ss_pred             ecCCcccch
Q 010623          218 CDGCFSNLR  226 (506)
Q Consensus       218 AdG~~S~vR  226 (506)
                      |+|..+..-
T Consensus       107 AtG~~~~~~  115 (437)
T 3sx6_A          107 ATGPKLAFE  115 (437)
T ss_dssp             CCCCEECGG
T ss_pred             CCCCCcCcc
Confidence            999876543

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.63  E-value=1.1e-07  Score=97.83  Aligned_cols=35  Identities=37%  Similarity=0.437  Sum_probs=33.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      ++||+||||||+|+++|+.|++.|++|+|+||++.
T Consensus         3 ~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~   37 (476)
T 3lad_A            3 KFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKG   37 (476)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCc
Confidence            69999999999999999999999999999999863

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.61  E-value=1.1e-07  Score=98.49  Aligned_cols=34  Identities=29%  Similarity=0.381  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC---CCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKD---GRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~---G~~v~vvE~~~   93 (506)
                      ++||+|||||++|+++|+.|++.   |++|+|+|+.+
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~   38 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   38 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC
Confidence            48999999999999999999999   99999999985

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.61  E-value=3.3e-07  Score=93.04  Aligned_cols=41  Identities=24%  Similarity=0.368  Sum_probs=36.3

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010623           56 ECPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP   96 (506)
Q Consensus        56 ~~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~   96 (506)
                      .++..+||+|||+|++|+++|..|++.|.+|+|+||++...
T Consensus        16 ~~~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~G   56 (475)
T 3p1w_A           16 FQGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYG   56 (475)
T ss_dssp             -CCCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             cccccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCC
Confidence            35567999999999999999999999999999999997543

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.61  E-value=1.5e-08  Score=98.61  Aligned_cols=115  Identities=22%  Similarity=0.256  Sum_probs=67.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCc-----cccccc---ccchHHHHHHhCc-hhHHhhcccceecc
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDR-----IVGELL---QPGGYLKLIELGL-EDCVEQIDAQRVFG  131 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~-----~~g~~l---~~~~~~~l~~~g~-~~~~~~~~~~~~~~  131 (506)
                      .||+|||||++|+.+|+.|++.|++|+|+|+++.....     ..+...   +.++...+...|+ .++++..+..-...
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~tp~h~~d~i~eL~CnpSigG~~~~~akGlL~~EIdaLGg~m~~~   81 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRMTPAHGTDRFAEIVCSNSLGGEGETNAKGLLQAEMRRAGSLVMEA   81 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSCCSSCCSSCTTCCCSCCEEEECSTTCHHHHHHHHHHHHTCHHHHH
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcCCccccCCCccccccCcCCCccccccchhHHHHHHHHcCChHhhh
Confidence            59999999999999999999999999999998632211     011111   1112211111221 22222211100000


Q ss_pred             eEEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEE
Q 010623          132 YALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLL  189 (506)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~  189 (506)
                      .    +  ...+  |     . .....++|..+.+.+.+.+.++++++++.++|+++.
T Consensus        82 a----D--~~~i--p-----A-g~al~vDR~~f~~~~~~~le~~pni~l~q~eV~~l~  125 (443)
T 3g5s_A           82 A----D--LARV--P-----A-GGALAVDREEFSGYITERLTGHPLLEVVREEVREIP  125 (443)
T ss_dssp             H----H--HSEE--C-----C-TTEEEECHHHHHHHHHHHHHTCTTEEEECSCCCSCC
T ss_pred             h----h--hcCC--C-----C-CccccCCcHHHHHHHHHHHHcCCCeEEEhhhhhhhc
Confidence            0    0  0000  1     0 011248999999999999999999999988777664

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.59  E-value=1.1e-07  Score=97.95  Aligned_cols=113  Identities=12%  Similarity=0.108  Sum_probs=69.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623           61 ADVIVVGAGVAGAALANTLAKD--GRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG  138 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (506)
                      +||+|||||++|+++|..|++.  |.+|+|+|+.+......+       ++..+        +..               
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~-------~~~~~--------~~~---------------   86 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQC-------GLPYV--------ISG---------------   86 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGG-------GHHHH--------HTT---------------
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCC-------Ccchh--------hcC---------------
Confidence            6999999999999999999996  899999999864321111       11100        000               


Q ss_pred             ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEE
Q 010623          139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTI  216 (506)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV  216 (506)
                      ..     .      . ....+.+      ..+.+.+..+++++.+ +|+.+..+++.   +++.+ .+|+..++++|.||
T Consensus        87 ~~-----~------~-~~~l~~~------~~~~~~~~~gv~~~~~~~v~~i~~~~~~---v~v~~~~~g~~~~~~~d~lv  145 (480)
T 3cgb_A           87 AI-----A------S-TEKLIAR------NVKTFRDKYGIDAKVRHEVTKVDTEKKI---VYAEHTKTKDVFEFSYDRLL  145 (480)
T ss_dssp             SS-----S------C-GGGGBSS------CHHHHHHTTCCEEESSEEEEEEETTTTE---EEEEETTTCCEEEEECSEEE
T ss_pred             Cc-----C------C-HHHhhhc------CHHHHHhhcCCEEEeCCEEEEEECCCCE---EEEEEcCCCceEEEEcCEEE
Confidence            00     0      0 0000000      1122222237888876 58888766663   55555 45764568899999


Q ss_pred             eecCCccc
Q 010623          217 VCDGCFSN  224 (506)
Q Consensus       217 ~AdG~~S~  224 (506)
                      .|+|....
T Consensus       146 iAtG~~p~  153 (480)
T 3cgb_A          146 IATGVRPV  153 (480)
T ss_dssp             ECCCEEEC
T ss_pred             ECCCCccc
Confidence            99997654

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.58  E-value=6.2e-08  Score=98.84  Aligned_cols=112  Identities=20%  Similarity=0.135  Sum_probs=68.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623           61 ADVIVVGAGVAGAALANTLAKD--GRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG  138 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (506)
                      +||+|||||++|+++|..|++.  |.+|+|+|+++.....       +.+....        +..               
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~-------~~~~~~~--------~~~---------------   50 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFL-------SAGMQLY--------LEG---------------   50 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBC-------GGGHHHH--------HTT---------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcc-------cccchhh--------hcC---------------
Confidence            3899999999999999999998  9999999998643211       1111100        000               


Q ss_pred             ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEE
Q 010623          139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTI  216 (506)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV  216 (506)
                      ..  .  ....        ...  .+.    +.+.+. +++++.++ ++++..+++.   |++.+ .+|+..++++|.+|
T Consensus        51 ~~--~--~~~~--------~~~--~~~----~~~~~~-gv~~~~~~~v~~i~~~~~~---v~~~~~~~g~~~~~~~d~lv  108 (447)
T 1nhp_A           51 KV--K--DVNS--------VRY--MTG----EKMESR-GVNVFSNTEITAIQPKEHQ---VTVKDLVSGEERVENYDKLI  108 (447)
T ss_dssp             SS--C--CGGG--------SBS--CCH----HHHHHT-TCEEEETEEEEEEETTTTE---EEEEETTTCCEEEEECSEEE
T ss_pred             cc--C--CHHH--------hhc--CCH----HHHHHC-CCEEEECCEEEEEeCCCCE---EEEEecCCCceEEEeCCEEE
Confidence            00  0  0000        000  011    222334 78887664 8888766663   55555 45665568899999


Q ss_pred             eecCCccc
Q 010623          217 VCDGCFSN  224 (506)
Q Consensus       217 ~AdG~~S~  224 (506)
                      .|+|....
T Consensus       109 iAtG~~p~  116 (447)
T 1nhp_A          109 ISPGAVPF  116 (447)
T ss_dssp             ECCCEEEC
T ss_pred             EcCCCCcC
Confidence            99997643

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.57  E-value=2.4e-07  Score=95.36  Aligned_cols=35  Identities=29%  Similarity=0.411  Sum_probs=32.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .++||+|||||++|+++|..|++.|++|+|+|++.
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~   44 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVEAKA   44 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESSC
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            35899999999999999999999999999999973

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.56  E-value=1.4e-07  Score=96.84  Aligned_cols=36  Identities=22%  Similarity=0.246  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKD--GRRVHVIERDLSE   95 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~~~   95 (506)
                      +.||+|||||++|+++|..|++.  |++|+|+|+++..
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~   40 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRI   40 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcc
Confidence            36999999999999999999998  9999999998653

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.56  E-value=1.4e-07  Score=95.29  Aligned_cols=36  Identities=44%  Similarity=0.576  Sum_probs=33.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCc--EEEEecCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRR--VHVIERDLS   94 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~--v~vvE~~~~   94 (506)
                      +++||+|||||++|+++|..|+++|.+  |+|+|+.+.
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~   45 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPE   45 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSS
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCC
Confidence            358999999999999999999999987  999999864

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.54  E-value=1.1e-07  Score=97.23  Aligned_cols=34  Identities=29%  Similarity=0.295  Sum_probs=31.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKD--GRRVHVIERDLS   94 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~~   94 (506)
                      +||+|||||++|+++|..|++.  |.+|+|+|+++.
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~   36 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDN   36 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCC
Confidence            4899999999999999999998  999999999864

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.54  E-value=2.4e-07  Score=95.48  Aligned_cols=34  Identities=38%  Similarity=0.597  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      .++||+||||||+|+++|+.|++.|++|+|+||.
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~   41 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLNGARVACLDFV   41 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEec
Confidence            4699999999999999999999999999999964

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.52  E-value=8.7e-07  Score=90.71  Aligned_cols=57  Identities=16%  Similarity=0.146  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEE-eCCccEEEEEcCeEEeecCCcccc
Q 010623          163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYK-TKAGEELTAYAPLTIVCDGCFSNL  225 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~-~~~G~~~~i~a~~vV~AdG~~S~v  225 (506)
                      .+.+.+.+.+++. +++++.++ |+++..+++++  +.+. ..+|+   +.+|.||.|.|.....
T Consensus       212 ~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~--~~v~~~~~g~---i~aD~Vv~a~G~~p~~  270 (463)
T 4dna_A          212 DMRRGLHAAMEEK-GIRILCEDIIQSVSADADGR--RVATTMKHGE---IVADQVMLALGRMPNT  270 (463)
T ss_dssp             HHHHHHHHHHHHT-TCEEECSCCEEEEEECTTSC--EEEEESSSCE---EEESEEEECSCEEESC
T ss_pred             HHHHHHHHHHHHC-CCEEECCCEEEEEEEcCCCE--EEEEEcCCCe---EEeCEEEEeeCcccCC
Confidence            4566677777777 88888874 99998775542  3455 67775   6799999999987654

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.52  E-value=3.5e-07  Score=96.68  Aligned_cols=114  Identities=18%  Similarity=0.216  Sum_probs=71.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEE
Q 010623           59 FDADVIVVGAGVAGAALANTLAKD--GRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFK  136 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  136 (506)
                      +..||+|||||++|+++|..|++.  |++|+|+|+++...       +.+.++...        +..             
T Consensus        35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~-------~~~~~lp~~--------~~g-------------   86 (588)
T 3ics_A           35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYIS-------FANCGLPYY--------IGG-------------   86 (588)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSS-------BCGGGHHHH--------HTT-------------
T ss_pred             cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCcc-------ccCCCCchh--------hcC-------------
Confidence            457999999999999999999998  89999999986532       111111110        000             


Q ss_pred             CCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEe-CCccEEEEEcCe
Q 010623          137 DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKT-KAGEELTAYAPL  214 (506)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~  214 (506)
                        ...    +             ....+...+...+.+. ++.++.+ +|+++..++..   +.+.+ .+|+..++.+|.
T Consensus        87 --~~~----~-------------~~~~~~~~~~~~~~~~-gi~v~~~~~V~~id~~~~~---v~v~~~~~g~~~~~~~d~  143 (588)
T 3ics_A           87 --VIT----E-------------RQKLLVQTVERMSKRF-NLDIRVLSEVVKINKEEKT---ITIKNVTTNETYNEAYDV  143 (588)
T ss_dssp             --SSC----C-------------GGGGBSSCHHHHHHHT-TCEEECSEEEEEEETTTTE---EEEEETTTCCEEEEECSE
T ss_pred             --cCC----C-------------hHHhhccCHHHHHHhc-CcEEEECCEEEEEECCCCE---EEEeecCCCCEEEEeCCE
Confidence              000    0             0000111222233334 7788776 59998877664   44544 467666788999


Q ss_pred             EEeecCCcc
Q 010623          215 TIVCDGCFS  223 (506)
Q Consensus       215 vV~AdG~~S  223 (506)
                      ||.|+|...
T Consensus       144 lviAtG~~p  152 (588)
T 3ics_A          144 LILSPGAKP  152 (588)
T ss_dssp             EEECCCEEE
T ss_pred             EEECCCCCC
Confidence            999999743

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.52  E-value=1.8e-07  Score=95.51  Aligned_cols=34  Identities=21%  Similarity=0.438  Sum_probs=32.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKD--GRRVHVIERDLS   94 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~~   94 (506)
                      .||+|||||++|+++|..|++.  |.+|+|+|+++.
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~   38 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQAT   38 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSC
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCC
Confidence            6999999999999999999998  999999999874

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.51  E-value=1.1e-07  Score=98.26  Aligned_cols=36  Identities=25%  Similarity=0.464  Sum_probs=33.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC---CcEEEEecCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDG---RRVHVIERDLS   94 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G---~~v~vvE~~~~   94 (506)
                      +++||+|||||++|+++|..|++.|   .+|+|+|+++.
T Consensus        34 m~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~   72 (490)
T 2bc0_A           34 WGSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSN   72 (490)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSC
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCC
Confidence            3589999999999999999999988   99999999864

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=98.47  E-value=1.7e-06  Score=89.42  Aligned_cols=63  Identities=16%  Similarity=0.134  Sum_probs=46.1

Q ss_pred             ccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCC-------eEEEEEEEe-CCccEEEEEcCeEEeecCCc
Q 010623          159 FHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKG-------TIKGVQYKT-KAGEELTAYAPLTIVCDGCF  222 (506)
Q Consensus       159 i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~-------~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~  222 (506)
                      ..|.++.+.|...+.+. +..+++++ |++++..+.       ....|+..+ .+|+..+++|+.||.|+|..
T Consensus       142 p~r~E~~~Yl~~~A~~~-~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~~  213 (501)
T 4b63_A          142 PARLEFEDYMRWCAQQF-SDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGGT  213 (501)
T ss_dssp             CBHHHHHHHHHHHHHTT-GGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCCE
T ss_pred             CCHHHHHHHHHHHHHHc-CCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcCCC
Confidence            46788999999999887 45577775 999876432       123355554 45777788999999999953

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.47  E-value=1.7e-07  Score=95.77  Aligned_cols=34  Identities=35%  Similarity=0.524  Sum_probs=32.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      +||+||||||+|+++|..|++.|++|+|+|+++.
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~   35 (455)
T 2yqu_A            2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKA   35 (455)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCC
Confidence            7999999999999999999999999999999853

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.46  E-value=3.2e-07  Score=92.23  Aligned_cols=34  Identities=29%  Similarity=0.473  Sum_probs=31.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC--cEEEEecCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR--RVHVIERDLS   94 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~~   94 (506)
                      .||+|||||++|+++|..|++.|+  +|+|+|+++.
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~   37 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKH   37 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSS
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence            489999999999999999999999  8999999863

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=98.43  E-value=1.1e-06  Score=91.96  Aligned_cols=52  Identities=31%  Similarity=0.453  Sum_probs=43.0

Q ss_pred             HcCCCEEEEece-EEEEEee--CCeEEEEEEEeCCccEEEEEc-CeEEeecCCccc
Q 010623          173 ASLPNVRLEQGT-VTSLLEE--KGTIKGVQYKTKAGEELTAYA-PLTIVCDGCFSN  224 (506)
Q Consensus       173 ~~~~~v~i~~~~-v~~~~~~--~~~v~~v~v~~~~G~~~~i~a-~~vV~AdG~~S~  224 (506)
                      .+++++++..++ |+++..+  +++++||++...+|+..+++| +-||.|.|+...
T Consensus       216 ~~r~Nl~v~~~a~v~ri~~~~~~~~a~GV~~~~~~g~~~~v~A~keVILsaGa~~s  271 (577)
T 3q9t_A          216 KNKPNITIVPEVHSKRLIINEADRTCKGVTVVTAAGNELNFFADREVILSQGVFET  271 (577)
T ss_dssp             SSCTTEEEECSEEEEEEEEETTTTEEEEEEEEETTSCEEEEEEEEEEEECSHHHHH
T ss_pred             hcCCCeEEEcCcEEEEEEEeCCCCEEEEEEEEeCCCcEEEEEeeeEEEEcccccCC
Confidence            345689999885 9999988  788999999877788888889 679999998753

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.43  E-value=1.9e-07  Score=90.97  Aligned_cols=38  Identities=37%  Similarity=0.516  Sum_probs=33.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAK--DGRRVHVIERDLSEP   96 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~--~G~~v~vvE~~~~~~   96 (506)
                      .++||+||||||+||+||+.|++  .|++|+|+||.+.+.
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~G  103 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG  103 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCC
Confidence            46899999999999999999975  599999999986543

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.43  E-value=6.3e-07  Score=89.32  Aligned_cols=35  Identities=20%  Similarity=0.371  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      +++|+|||||+||+++|..|++.+.+|+|+|+.+.
T Consensus         9 ~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~   43 (385)
T 3klj_A            9 STKILILGAGPAGFSAAKAALGKCDDITMINSEKY   43 (385)
T ss_dssp             BCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSS
T ss_pred             CCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCC
Confidence            58999999999999999999888999999999865

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=98.43  E-value=1e-06  Score=92.07  Aligned_cols=52  Identities=23%  Similarity=0.365  Sum_probs=42.6

Q ss_pred             HHcCCCEEEEece-EEEEEee----CCeEEEEEEEeCCccEEEEEcC-eEEeecCCcc
Q 010623          172 AASLPNVRLEQGT-VTSLLEE----KGTIKGVQYKTKAGEELTAYAP-LTIVCDGCFS  223 (506)
Q Consensus       172 ~~~~~~v~i~~~~-v~~~~~~----~~~v~~v~v~~~~G~~~~i~a~-~vV~AdG~~S  223 (506)
                      +.++++.++..++ |+++..+    +++++||++...+|+.++++|+ -||.|.|+..
T Consensus       236 ~~~r~NL~V~t~a~V~rIl~d~~~~~~ra~GV~~~~~~G~~~~v~A~kEVILsAGa~~  293 (583)
T 3qvp_A          236 NYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAV  293 (583)
T ss_dssp             TTTCTTEEEECSCEEEEEEEECSSSSCEEEEEEEESSTTCEEEEEEEEEEEECSCTTT
T ss_pred             hhcCCCcEEEcCCEEEEEEeccCCCCCEEEEEEEEecCCcEEEEEECCEEEEeCCccC
Confidence            3445699999885 9999987    6789999998678888889996 6999999874

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.42  E-value=6.8e-07  Score=91.93  Aligned_cols=34  Identities=35%  Similarity=0.481  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      .++||+||||||+|+++|+.|++.|++|+|+||+
T Consensus        19 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~   52 (478)
T 3dk9_A           19 ASYDYLVIGGGSGGLASARRAAELGARAAVVESH   52 (478)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            4699999999999999999999999999999976

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.41  E-value=1.6e-06  Score=88.70  Aligned_cols=103  Identities=19%  Similarity=0.230  Sum_probs=75.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.....                  .                      
T Consensus       169 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------~----------------------  208 (464)
T 2eq6_A          169 PKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQ------------------G----------------------  208 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT------------------S----------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccc------------------c----------------------
Confidence            358999999999999999999999999999998532110                  0                      


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCC--ccEEEEEcCeEE
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKA--GEELTAYAPLTI  216 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~--G~~~~i~a~~vV  216 (506)
                                           ...+.+.+.+.+++. +++++.++ |+++..+++.+. +++.. +  |+..++.+|.||
T Consensus       209 ---------------------~~~~~~~l~~~l~~~-gV~i~~~~~v~~i~~~~~~~~-v~~~~-~~~g~~~~i~~D~vv  264 (464)
T 2eq6_A          209 ---------------------DPETAALLRRALEKE-GIRVRTKTKAVGYEKKKDGLH-VRLEP-AEGGEGEEVVVDKVL  264 (464)
T ss_dssp             ---------------------CHHHHHHHHHHHHHT-TCEEECSEEEEEEEEETTEEE-EEEEE-TTCCSCEEEEESEEE
T ss_pred             ---------------------CHHHHHHHHHHHHhc-CCEEEcCCEEEEEEEeCCEEE-EEEee-cCCCceeEEEcCEEE
Confidence                                 012344556666666 79998884 999987776432 44431 4  764567899999


Q ss_pred             eecCCcccch
Q 010623          217 VCDGCFSNLR  226 (506)
Q Consensus       217 ~AdG~~S~vR  226 (506)
                      .|+|..+...
T Consensus       265 ~a~G~~p~~~  274 (464)
T 2eq6_A          265 VAVGRKPRTE  274 (464)
T ss_dssp             ECSCEEESCT
T ss_pred             ECCCcccCCC
Confidence            9999887653

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.40  E-value=5.9e-07  Score=91.58  Aligned_cols=35  Identities=26%  Similarity=0.350  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKD--GRRVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~~   94 (506)
                      .+||+|||||++|+++|..|++.  |.+|+|+|+.+.
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~   39 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEW   39 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCc
Confidence            47999999999999999999998  889999999864

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.39  E-value=3.7e-07  Score=92.53  Aligned_cols=104  Identities=20%  Similarity=0.239  Sum_probs=65.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           62 DVIVVGAGVAGAALANTLAKDG--RRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G--~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      +|+|||||++|+++|..|++.+  ++|+|||+++..       .+.|......  .|..+         ...        
T Consensus         4 ~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~-------~~~p~l~~v~--~g~~~---------~~~--------   57 (430)
T 3hyw_A            4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYF-------GFTPAFPHLA--MGWRK---------FED--------   57 (430)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEE-------ECGGGHHHHH--HTCSC---------GGG--------
T ss_pred             cEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCC-------ccCccHHHHh--cCCCC---------HHH--------
Confidence            6999999999999999999876  799999998531       1222111111  11110         000        


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD  219 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad  219 (506)
                         +.++                 +    .+.+.+. ++++..++|+++..+...|     .+++|++  +.+|+||.|+
T Consensus        58 ---i~~~-----------------~----~~~~~~~-gv~~i~~~v~~Id~~~~~V-----~~~~g~~--i~YD~LViAt  105 (430)
T 3hyw_A           58 ---ISVP-----------------L----APLLPKF-NIEFINEKAESIDPDANTV-----TTQSGKK--IEYDYLVIAT  105 (430)
T ss_dssp             ---SEEE-----------------S----TTTGGGG-TEEEECSCEEEEETTTTEE-----EETTCCE--EECSEEEECC
T ss_pred             ---hhhc-----------------H----HHHHHHC-CcEEEEeEEEEEECCCCEE-----EECCCCE--EECCEEEEeC
Confidence               0000                 0    0111223 7999999999998776642     3577874  6699999999


Q ss_pred             CCcc
Q 010623          220 GCFS  223 (506)
Q Consensus       220 G~~S  223 (506)
                      |...
T Consensus       106 G~~~  109 (430)
T 3hyw_A          106 GPKL  109 (430)
T ss_dssp             CCEE
T ss_pred             CCCc
Confidence            9753

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.39  E-value=1.1e-06  Score=93.01  Aligned_cols=35  Identities=34%  Similarity=0.560  Sum_probs=32.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      ...+||+||||||+|+++|..|++.|++|+|+|+.
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~  139 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYV  139 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             cccccEEEECCCccHHHHHHHHHhCCCeEEEEecc
Confidence            34689999999999999999999999999999984

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.38  E-value=1.1e-06  Score=90.50  Aligned_cols=32  Identities=34%  Similarity=0.509  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH-CCCcEEEEec
Q 010623           60 DADVIVVGAGVAGAALANTLAK-DGRRVHVIER   91 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~-~G~~v~vvE~   91 (506)
                      ++||+||||||+|+++|+.|++ .|++|+|+|+
T Consensus         3 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~   35 (490)
T 1fec_A            3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDL   35 (490)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             cccEEEECCCHHHHHHHHHHHHHcCCEEEEEec
Confidence            5899999999999999999999 9999999994

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.38  E-value=3.1e-06  Score=84.34  Aligned_cols=100  Identities=20%  Similarity=0.283  Sum_probs=75.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||+.|+.+|..|++.|.+|+++|+.+.....                                         
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-----------------------------------------  183 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPG-----------------------------------------  183 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhc-----------------------------------------
Confidence            468999999999999999999999999999997532110                                         


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                         .....+.+.+.+.+++. +++++.++ |+++..+++.   +.+...+|+  ++.+|.||.|
T Consensus       184 -------------------~~~~~~~~~l~~~l~~~-gv~i~~~~~v~~i~~~~~~---~~v~~~~g~--~i~~d~vv~a  238 (384)
T 2v3a_A          184 -------------------LLHPAAAKAVQAGLEGL-GVRFHLGPVLASLKKAGEG---LEAHLSDGE--VIPCDLVVSA  238 (384)
T ss_dssp             -------------------TSCHHHHHHHHHHHHTT-TCEEEESCCEEEEEEETTE---EEEEETTSC--EEEESEEEEC
T ss_pred             -------------------ccCHHHHHHHHHHHHHc-CCEEEeCCEEEEEEecCCE---EEEEECCCC--EEECCEEEEC
Confidence                               00113455666677776 78888885 9999877663   445567786  4679999999


Q ss_pred             cCCcccc
Q 010623          219 DGCFSNL  225 (506)
Q Consensus       219 dG~~S~v  225 (506)
                      +|..+..
T Consensus       239 ~G~~p~~  245 (384)
T 2v3a_A          239 VGLRPRT  245 (384)
T ss_dssp             SCEEECC
T ss_pred             cCCCcCH
Confidence            9998865

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.37  E-value=1.3e-06  Score=90.63  Aligned_cols=34  Identities=35%  Similarity=0.486  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +|||+||||||+|+++|..+++.|.+|+|+|+..
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~   75 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVK   75 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            5999999999999999999999999999999875

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.36  E-value=4.1e-07  Score=91.60  Aligned_cols=34  Identities=26%  Similarity=0.503  Sum_probs=31.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCc--EEEEecCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRR--VHVIERDLS   94 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~--v~vvE~~~~   94 (506)
                      .+|+|||||++|+++|..|+++|.+  |+|+|+.+.
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~   38 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPH   38 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSS
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCC
Confidence            4899999999999999999999987  999999864

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.36  E-value=1.5e-06  Score=88.88  Aligned_cols=34  Identities=38%  Similarity=0.569  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      .++||+|||||++|+++|..|++.|++|+|+|++
T Consensus         3 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~   36 (463)
T 2r9z_A            3 QHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESK   36 (463)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCC
Confidence            3689999999999999999999999999999997

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.35  E-value=5.5e-07  Score=93.09  Aligned_cols=34  Identities=32%  Similarity=0.526  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ++||+|||||++|+++|..|++.|++|+|+|+++
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   35 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSR   35 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            5899999999999999999999999999999984

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.34  E-value=1.2e-06  Score=91.14  Aligned_cols=38  Identities=29%  Similarity=0.337  Sum_probs=34.5

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        57 ~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      ++.++||+|||||++|+++|+.|++.|++|+|+|+++.
T Consensus        40 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~   77 (523)
T 1mo9_A           40 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPF   77 (523)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            34569999999999999999999999999999999853

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.33  E-value=1.1e-06  Score=92.33  Aligned_cols=35  Identities=17%  Similarity=0.271  Sum_probs=32.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKD--GRRVHVIERDLSE   95 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~~~   95 (506)
                      .||+|||||++|+++|..|++.  |++|+|+|+.+..
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~   38 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYV   38 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCS
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCc
Confidence            3899999999999999999998  8999999998653

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.33  E-value=1.9e-06  Score=88.25  Aligned_cols=34  Identities=32%  Similarity=0.392  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ++||+||||||+|+++|..|++.|++|+|+|+++
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~   39 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE   39 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            5899999999999999999999999999999975

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.33  E-value=9.1e-07  Score=91.29  Aligned_cols=35  Identities=31%  Similarity=0.465  Sum_probs=32.0

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHH-CCCcEEEEec
Q 010623           57 CPFDADVIVVGAGVAGAALANTLAK-DGRRVHVIER   91 (506)
Q Consensus        57 ~~~~~dVvIVGgG~aGl~~A~~La~-~G~~v~vvE~   91 (506)
                      |+.++||+||||||+|+++|+.|++ .|++|+|+|+
T Consensus         4 M~~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~   39 (495)
T 2wpf_A            4 MSKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDV   39 (495)
T ss_dssp             CCEEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             cccccCEEEECCChhHHHHHHHHHHhcCCeEEEEec
Confidence            3346899999999999999999999 9999999994

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.33  E-value=5e-06  Score=89.38  Aligned_cols=38  Identities=37%  Similarity=0.413  Sum_probs=34.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE   95 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~   95 (506)
                      +.++||+|||||++|+++|+.|+++|++|+|+|+++..
T Consensus       389 ~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~  426 (690)
T 3k30_A          389 ESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDL  426 (690)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             cccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            45689999999999999999999999999999998643

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.31  E-value=7.5e-07  Score=91.90  Aligned_cols=113  Identities=19%  Similarity=0.244  Sum_probs=70.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG  138 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (506)
                      ..+||+|||||++|+++|+.|+++ ++|+|+|+++.....     +...+                  ....       +
T Consensus       107 ~~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~-----~~~~~------------------~~~~-------g  155 (493)
T 1y56_A          107 VVVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGD-----MWLKG------------------IKQE-------G  155 (493)
T ss_dssp             EEESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCS-----GGGTC------------------SEET-------T
T ss_pred             ccCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCe-----eeccc------------------cccC-------C
Confidence            357999999999999999999999 999999998643211     10000                  0000       0


Q ss_pred             ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEe
Q 010623          139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV  217 (506)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~  217 (506)
                            ++          .  ...++...+.+.+ + .+++++.++ |+++..++..+. +. ...+++..++++|.+|.
T Consensus       156 ------~~----------~--~~~~~~~~l~~~l-~-~~v~~~~~~~v~~i~~~~~~~~-~~-~~~~~~~~~~~~d~lvl  213 (493)
T 1y56_A          156 ------FN----------K--DSRKVVEELVGKL-N-ENTKIYLETSALGVFDKGEYFL-VP-VVRGDKLIEILAKRVVL  213 (493)
T ss_dssp             ------TT----------E--EHHHHHHHHHHTC-C-TTEEEETTEEECCCEECSSSEE-EE-EEETTEEEEEEESCEEE
T ss_pred             ------CC----------C--CHHHHHHHHHHHH-h-cCCEEEcCCEEEEEEcCCcEEE-EE-EecCCeEEEEECCEEEE
Confidence                  00          0  1122334444444 3 478887774 888876665432 21 12455545688999999


Q ss_pred             ecCCccc
Q 010623          218 CDGCFSN  224 (506)
Q Consensus       218 AdG~~S~  224 (506)
                      |+|....
T Consensus       214 AtGa~~~  220 (493)
T 1y56_A          214 ATGAIDS  220 (493)
T ss_dssp             CCCEEEC
T ss_pred             CCCCCcc
Confidence            9997653

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.31  E-value=1.4e-06  Score=88.74  Aligned_cols=34  Identities=32%  Similarity=0.433  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      .++||+|||||++|+++|..|++.|++|+|+|++
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~   36 (450)
T 1ges_A            3 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK   36 (450)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCC
Confidence            3589999999999999999999999999999997

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.30  E-value=3e-07  Score=95.41  Aligned_cols=39  Identities=28%  Similarity=0.515  Sum_probs=35.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCCCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAK-DGRRVHVIERDLSEPD   97 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~-~G~~v~vvE~~~~~~~   97 (506)
                      +++||+|||||++||+||+.|++ .|++|+|+|+++....
T Consensus         9 ~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG   48 (513)
T 4gde_A            9 ISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGG   48 (513)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCG
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcC
Confidence            46999999999999999999998 5999999999986554

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.30  E-value=1.1e-06  Score=95.07  Aligned_cols=39  Identities=36%  Similarity=0.446  Sum_probs=34.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD   97 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~   97 (506)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+.+....
T Consensus       335 ~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~gg  373 (776)
T 4gut_A          335 HNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGG  373 (776)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceec
Confidence            358999999999999999999999999999999765443

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.26  E-value=2.3e-06  Score=86.01  Aligned_cols=36  Identities=28%  Similarity=0.520  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEecCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGR--RVHVIERDLS   94 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~~   94 (506)
                      +++||+|||||++|+++|..|++.|.  +|+|+|+++.
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~   43 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAE   43 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCS
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCC
Confidence            35899999999999999999999998  4999999864

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.25  E-value=4.1e-06  Score=85.50  Aligned_cols=33  Identities=18%  Similarity=0.344  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      ++||+||||||+|+++|..|++.|++|+|+|+.
T Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~   37 (458)
T 1lvl_A            5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (458)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEccC
Confidence            589999999999999999999999999999994

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.24  E-value=5.4e-06  Score=84.61  Aligned_cols=99  Identities=21%  Similarity=0.214  Sum_probs=73.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||++|+.+|..|++.|.+|+|+|+.+...+.                  .                      
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~------------------~----------------------  206 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPT------------------M----------------------  206 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT------------------S----------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccc------------------c----------------------
Confidence            357999999999999999999999999999998532110                  0                      


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                           ...+.+.|.+.+++. +++++.+ +|+++..++++   +.+...+|+  ++.+|.||.|
T Consensus       207 ---------------------~~~~~~~l~~~l~~~-Gv~i~~~~~V~~i~~~~~~---v~v~~~~g~--~i~~D~vv~A  259 (455)
T 2yqu_A          207 ---------------------DLEVSRAAERVFKKQ-GLTIRTGVRVTAVVPEAKG---ARVELEGGE--VLEADRVLVA  259 (455)
T ss_dssp             ---------------------CHHHHHHHHHHHHHH-TCEEECSCCEEEEEEETTE---EEEEETTSC--EEEESEEEEC
T ss_pred             ---------------------CHHHHHHHHHHHHHC-CCEEEECCEEEEEEEeCCE---EEEEECCCe--EEEcCEEEEC
Confidence                                 012333445555555 7888887 49999887764   445556675  3679999999


Q ss_pred             cCCcccc
Q 010623          219 DGCFSNL  225 (506)
Q Consensus       219 dG~~S~v  225 (506)
                      +|..+..
T Consensus       260 ~G~~p~~  266 (455)
T 2yqu_A          260 VGRRPYT  266 (455)
T ss_dssp             SCEEECC
T ss_pred             cCCCcCC
Confidence            9998865

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.23  E-value=1.6e-06  Score=85.83  Aligned_cols=34  Identities=32%  Similarity=0.551  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      ..||+|||||++|+++|..|++.| +|+|+|+++.
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~   41 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPV   41 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSS
T ss_pred             CCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCC
Confidence            369999999999999999999999 9999999864

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.23  E-value=1.5e-06  Score=89.58  Aligned_cols=35  Identities=14%  Similarity=0.302  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .+.+|||||||++|+++|..|++.+++|+|||+++
T Consensus        41 ~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~   75 (502)
T 4g6h_A           41 DKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRS   75 (502)
T ss_dssp             SSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSS
T ss_pred             CCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCC
Confidence            35689999999999999999999999999999985

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.23  E-value=1.5e-06  Score=86.55  Aligned_cols=35  Identities=29%  Similarity=0.379  Sum_probs=31.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC--CcEEEEecCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDG--RRVHVIERDL   93 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G--~~v~vvE~~~   93 (506)
                      .++||+|||||++|+++|..|++.|  .+|+|+|+++
T Consensus         3 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~   39 (384)
T 2v3a_A            3 ERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD   39 (384)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence            3589999999999999999999999  5799999874

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.22  E-value=1.7e-06  Score=87.72  Aligned_cols=33  Identities=27%  Similarity=0.466  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDG--RRVHVIERDLS   94 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G--~~v~vvE~~~~   94 (506)
                      +|+||||||+|+++|..|++.|  .+|+|+|+++.
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~   36 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRD   36 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCC
Confidence            6999999999999999999988  57999999853

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.21  E-value=3.7e-06  Score=84.28  Aligned_cols=104  Identities=18%  Similarity=0.177  Sum_probs=64.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           62 DVIVVGAGVAGAALANTLAKDG--RRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G--~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      +|+|||||++|+++|..|++.|  .+|+|||+++..       ...+.....+.  |..+ ...                
T Consensus         4 kVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~-------~~~p~~~~v~~--g~~~-~~~----------------   57 (401)
T 3vrd_B            4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETY-------YTCYMSNEVIG--GDRE-LAS----------------   57 (401)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSE-------ECSTTHHHHHH--TSSC-GGG----------------
T ss_pred             EEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCC-------CCccCHHHHhc--CCCC-HHH----------------
Confidence            6999999999999999998876  589999987521       11111111110  1100 000                


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD  219 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad  219 (506)
                         .              ..+   +.     .+.+. ++++..++|+++..+...+     ...+|++  +.+|++|.|+
T Consensus        58 ---~--------------~~~---~~-----~~~~~-gv~~i~~~v~~id~~~~~v-----~~~~g~~--i~yd~LviAt  104 (401)
T 3vrd_B           58 ---L--------------RVG---YD-----GLRAH-GIQVVHDSALGIDPDKKLV-----KTAGGAE--FAYDRCVVAP  104 (401)
T ss_dssp             ---G--------------EEC---SH-----HHHHT-TCEEECSCEEEEETTTTEE-----EETTSCE--EECSEEEECC
T ss_pred             ---H--------------hhC---HH-----HHHHC-CCEEEEeEEEEEEccCcEE-----Eecccce--eecceeeecc
Confidence               0              000   11     11223 7889888999998776532     2567764  6699999999


Q ss_pred             CCccc
Q 010623          220 GCFSN  224 (506)
Q Consensus       220 G~~S~  224 (506)
                      |....
T Consensus       105 G~~~~  109 (401)
T 3vrd_B          105 GIDLL  109 (401)
T ss_dssp             CEEEC
T ss_pred             CCccc
Confidence            97653

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.20  E-value=1.2e-05  Score=77.71  Aligned_cols=100  Identities=21%  Similarity=0.239  Sum_probs=74.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||+|++|+-+|..|++.|.+|+++++.+....                    .                     
T Consensus       145 ~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--------------------~---------------------  183 (320)
T 1trb_A          145 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA--------------------E---------------------  183 (320)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCC--------------------C---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCcccc--------------------C---------------------
Confidence            35799999999999999999999999999998753210                    0                     


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeC-C-ccEEEEEcCeEE
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTK-A-GEELTAYAPLTI  216 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~-~-G~~~~i~a~~vV  216 (506)
                                            ..+.+.+.+.+++. +++++.+ +++++..+++++.+|++.+. + |+..++.+|.||
T Consensus       184 ----------------------~~~~~~l~~~l~~~-gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv  240 (320)
T 1trb_A          184 ----------------------KILIKRLMDKVENG-NIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLF  240 (320)
T ss_dssp             ----------------------HHHHHHHHHHHHTS-SEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEE
T ss_pred             ----------------------HHHHHHHHHhcccC-CeEEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEE
Confidence                                  01233455556665 8999888 49999877767777777652 2 544568899999


Q ss_pred             eecCCcc
Q 010623          217 VCDGCFS  223 (506)
Q Consensus       217 ~AdG~~S  223 (506)
                      .|.|...
T Consensus       241 ~a~G~~p  247 (320)
T 1trb_A          241 VAIGHSP  247 (320)
T ss_dssp             ECSCEEE
T ss_pred             EEeCCCC
Confidence            9999654

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=98.20  E-value=4.5e-06  Score=86.81  Aligned_cols=59  Identities=17%  Similarity=0.324  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcc
Q 010623          164 FVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFS  223 (506)
Q Consensus       164 l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S  223 (506)
                      ....+...+...++.++..+. |.++..+++++++|.+...++. .++.|+-||.|.|+..
T Consensus       212 ~~~~~~~~~~~r~nl~v~~~~~v~~i~~~~~~a~gv~~~~~~~~-~~~~a~~VILsAGai~  271 (526)
T 3t37_A          212 ADAWLTKAVRGRKNLTILTGSRVRRLKLEGNQVRSLEVVGRQGS-AEVFADQIVLCAGALE  271 (526)
T ss_dssp             HHHHSCHHHHTCTTEEEECSCEEEEEEEETTEEEEEEEEETTEE-EEEEEEEEEECSHHHH
T ss_pred             ccccccccccCCCCeEEEeCCEEEEEEecCCeEEEEEEEecCce-EEEeecceEEcccccC
Confidence            344455556666789888875 9999999999999998876554 5688999999999764

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=98.19  E-value=7.8e-06  Score=85.27  Aligned_cols=57  Identities=16%  Similarity=0.149  Sum_probs=43.6

Q ss_pred             HHHHHHHHcCCCEEEEece-EEEEEeeC-CeEEEEEEEeC-CccEEEEEcC-eEEeecCCc
Q 010623          166 QRLREKAASLPNVRLEQGT-VTSLLEEK-GTIKGVQYKTK-AGEELTAYAP-LTIVCDGCF  222 (506)
Q Consensus       166 ~~L~~~~~~~~~v~i~~~~-v~~~~~~~-~~v~~v~v~~~-~G~~~~i~a~-~vV~AdG~~  222 (506)
                      ..+...+.+.++++++.++ |+++..++ +++++|++... +|+..+++|+ .||.|.|+.
T Consensus       212 ~a~l~~a~~~~~~~i~~~~~V~~i~~~~~~~~~GV~~~~~~~g~~~~i~A~k~VIlaaG~~  272 (546)
T 2jbv_A          212 VSYIHPIVEQENFTLLTGLRARQLVFDADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAI  272 (546)
T ss_dssp             HHHTGGGTTCTTEEEECSCEEEEEEECTTSBEEEEEEESSTTSCEEEEEEEEEEEECSHHH
T ss_pred             HHHHHHHhcCCCcEEEeCCEEEEEEECCCCeEEEEEEEECCCCcEEEEEeCccEEEecCcc
Confidence            3444444445689999885 99999877 78889988653 2777789998 999999995

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.19  E-value=6.3e-06  Score=91.70  Aligned_cols=36  Identities=39%  Similarity=0.616  Sum_probs=33.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      ..+||+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus       127 ~~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~  162 (965)
T 2gag_A          127 VHTDVLVVGAGPAGLAAAREASRSGARVMLLDERAE  162 (965)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            358999999999999999999999999999999854

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.16  E-value=2e-06  Score=88.92  Aligned_cols=63  Identities=29%  Similarity=0.366  Sum_probs=47.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc-----------c-ccc---ccchHHHHHHhCchhH
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIV-----------G-ELL---QPGGYLKLIELGLEDC  120 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~-----------g-~~l---~~~~~~~l~~~g~~~~  120 (506)
                      ...+||+|||||++||++|+.|+++|++|+|+|+++....+..           | ..+   .+...++++++|+.+.
T Consensus        11 ~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~lgl~~~   88 (504)
T 1sez_A           11 SSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFLIDSLGLREK   88 (504)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCCCSHHHHHHHHHTTCGGG
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCeEEecCCcccccCcHHHHHHHHHcCCccc
Confidence            3468999999999999999999999999999999976543221           1 112   2445678899998754

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.15  E-value=1.5e-05  Score=81.13  Aligned_cols=100  Identities=26%  Similarity=0.337  Sum_probs=72.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG  138 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (506)
                      ...+|+|||||++|+.+|..|++.|.+|+|+|+.+....+.                                       
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~---------------------------------------  188 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVY---------------------------------------  188 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT---------------------------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCccccccc---------------------------------------
Confidence            35799999999999999999999999999999985321100                                       


Q ss_pred             ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEe
Q 010623          139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV  217 (506)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~  217 (506)
                                           ....+.+.+.+.+++. +++++.++ |+++..+ +++..+.  . +|+  ++.+|.||.
T Consensus       189 ---------------------~~~~~~~~l~~~l~~~-gv~i~~~~~v~~i~~~-~~v~~v~--~-~~~--~i~~d~vi~  240 (447)
T 1nhp_A          189 ---------------------LDKEFTDVLTEEMEAN-NITIATGETVERYEGD-GRVQKVV--T-DKN--AYDADLVVV  240 (447)
T ss_dssp             ---------------------CCHHHHHHHHHHHHTT-TEEEEESCCEEEEECS-SBCCEEE--E-SSC--EEECSEEEE
T ss_pred             ---------------------CCHHHHHHHHHHHHhC-CCEEEcCCEEEEEEcc-CcEEEEE--E-CCC--EEECCEEEE
Confidence                                 0013455667777776 89999875 9998765 4432233  3 344  467999999


Q ss_pred             ecCCcccc
Q 010623          218 CDGCFSNL  225 (506)
Q Consensus       218 AdG~~S~v  225 (506)
                      |+|.....
T Consensus       241 a~G~~p~~  248 (447)
T 1nhp_A          241 AVGVRPNT  248 (447)
T ss_dssp             CSCEEESC
T ss_pred             CcCCCCCh
Confidence            99987654

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.14  E-value=2.1e-05  Score=80.16  Aligned_cols=102  Identities=20%  Similarity=0.286  Sum_probs=73.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+...+.                  .                      
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------~----------------------  209 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG------------------F----------------------  209 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT------------------S----------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc------------------c----------------------
Confidence            468999999999999999999999999999998532100                  0                      


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                           ...+.+.+.+.+++. +++++.+ +|+++..+++++. +++.. +|+..++.+|.||.|
T Consensus       210 ---------------------~~~~~~~l~~~l~~~-gv~i~~~~~v~~i~~~~~~~~-v~~~~-~g~~~~~~~D~vv~a  265 (455)
T 1ebd_A          210 ---------------------EKQMAAIIKKRLKKK-GVEVVTNALAKGAEEREDGVT-VTYEA-NGETKTIDADYVLVT  265 (455)
T ss_dssp             ---------------------CHHHHHHHHHHHHHT-TCEEEESEEEEEEEEETTEEE-EEEEE-TTEEEEEEESEEEEC
T ss_pred             ---------------------CHHHHHHHHHHHHHC-CCEEEeCCEEEEEEEeCCeEE-EEEEe-CCceeEEEcCEEEEC
Confidence                                 012334555566666 7888887 4999987766432 44432 333346789999999


Q ss_pred             cCCcccc
Q 010623          219 DGCFSNL  225 (506)
Q Consensus       219 dG~~S~v  225 (506)
                      +|.....
T Consensus       266 ~G~~p~~  272 (455)
T 1ebd_A          266 VGRRPNT  272 (455)
T ss_dssp             SCEEESC
T ss_pred             cCCCccc
Confidence            9987654

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.13  E-value=1.4e-05  Score=78.61  Aligned_cols=99  Identities=19%  Similarity=0.257  Sum_probs=73.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||+|++|+-+|..|++.|.+|+++++.+.....       +                                  
T Consensus       164 ~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~-------~----------------------------------  202 (360)
T 3ab1_A          164 KRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGH-------G----------------------------------  202 (360)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSC-------S----------------------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCC-------H----------------------------------
Confidence            47999999999999999999999999999987532100       0                                  


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD  219 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad  219 (506)
                                            .+.+.|.+..++. +++++.+ +++++..+++++.+|++...+|+..++.+|.||.|.
T Consensus       203 ----------------------~~~~~l~~~~~~~-gv~i~~~~~v~~i~~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~  259 (360)
T 3ab1_A          203 ----------------------KTAHEVERARANG-TIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILI  259 (360)
T ss_dssp             ----------------------HHHHSSHHHHHHT-SEEEESSEEEEEEEEETTEEEEEEEEETTCCEEEEECSEEEECC
T ss_pred             ----------------------HHHHHHHHHhhcC-ceEEEcCcCHHHhccCCCceEEEEEEecCCCeEEEeCCEEEECC
Confidence                                  0111223333444 7999988 599998887877677776567765678899999999


Q ss_pred             CCcc
Q 010623          220 GCFS  223 (506)
Q Consensus       220 G~~S  223 (506)
                      |...
T Consensus       260 G~~p  263 (360)
T 3ab1_A          260 GFKS  263 (360)
T ss_dssp             CBCC
T ss_pred             CCCC
Confidence            9654

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.12  E-value=2.6e-05  Score=74.93  Aligned_cols=96  Identities=24%  Similarity=0.278  Sum_probs=72.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||+|++|+-+|..|++.|.+|+++++.+....                    .                      
T Consensus       145 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--------------------~----------------------  182 (310)
T 1fl2_A          145 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA--------------------D----------------------  182 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS--------------------C----------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccCc--------------------c----------------------
Confidence            4799999999999999999999999999998753200                    0                      


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEee
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVC  218 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~A  218 (506)
                                               +.+.+.+.+..+++++.++ ++++..+++++.++++.+ .+|++.++.+|.||.|
T Consensus       183 -------------------------~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a  237 (310)
T 1fl2_A          183 -------------------------QVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQ  237 (310)
T ss_dssp             -------------------------HHHHHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEEC
T ss_pred             -------------------------HHHHHHHhhCCCeEEecCCceEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEe
Confidence                                     0122233443489998884 999987767776777766 4576667889999999


Q ss_pred             cCCcc
Q 010623          219 DGCFS  223 (506)
Q Consensus       219 dG~~S  223 (506)
                      .|...
T Consensus       238 ~G~~p  242 (310)
T 1fl2_A          238 IGLLP  242 (310)
T ss_dssp             SCEEE
T ss_pred             eCCcc
Confidence            98543

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.12  E-value=1.8e-05  Score=80.99  Aligned_cols=103  Identities=18%  Similarity=0.226  Sum_probs=72.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||..|+-+|..|++.|.+|+++|+.+...+.     +                                   
T Consensus       174 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----~-----------------------------------  213 (468)
T 2qae_A          174 PKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPT-----L-----------------------------------  213 (468)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-----S-----------------------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCccccc-----C-----------------------------------
Confidence            458999999999999999999999999999998532110     0                                   


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHH-HcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEe
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKA-ASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV  217 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~-~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~  217 (506)
                                           ...+.+.+.+.+ ++. +++++.+ +|+++..+++++ .+++...+|+..++.+|.||.
T Consensus       214 ---------------------d~~~~~~l~~~l~~~~-gv~i~~~~~v~~i~~~~~~~-~v~~~~~~g~~~~i~~D~vv~  270 (468)
T 2qae_A          214 ---------------------DEDVTNALVGALAKNE-KMKFMTSTKVVGGTNNGDSV-SLEVEGKNGKRETVTCEALLV  270 (468)
T ss_dssp             ---------------------CHHHHHHHHHHHHHHT-CCEEECSCEEEEEEECSSSE-EEEEECC---EEEEEESEEEE
T ss_pred             ---------------------CHHHHHHHHHHHhhcC-CcEEEeCCEEEEEEEcCCeE-EEEEEcCCCceEEEECCEEEE
Confidence                                 012334555556 555 7888887 599998766543 244433366445688999999


Q ss_pred             ecCCcccc
Q 010623          218 CDGCFSNL  225 (506)
Q Consensus       218 AdG~~S~v  225 (506)
                      |.|..+..
T Consensus       271 a~G~~p~~  278 (468)
T 2qae_A          271 SVGRRPFT  278 (468)
T ss_dssp             CSCEEECC
T ss_pred             CCCcccCC
Confidence            99988764

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.12  E-value=1.8e-05  Score=80.89  Aligned_cols=100  Identities=19%  Similarity=0.166  Sum_probs=73.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||.+|+-+|..|++.|.+|+|+|+.+.....                  +.                     
T Consensus       166 ~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~------------------~~---------------------  206 (463)
T 2r9z_A          166 PKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQ------------------FD---------------------  206 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT------------------SC---------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccc------------------cC---------------------
Confidence            357999999999999999999999999999987531100                  00                     


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                            ..+.+.+.+.+++. +++++.++ |+++..++++   +.+...+|++ ++.+|.||.|
T Consensus       207 ----------------------~~~~~~l~~~l~~~-gv~i~~~~~v~~i~~~~~~---~~v~~~~G~~-~i~~D~vv~a  259 (463)
T 2r9z_A          207 ----------------------PLLSATLAENMHAQ-GIETHLEFAVAALERDAQG---TTLVAQDGTR-LEGFDSVIWA  259 (463)
T ss_dssp             ----------------------HHHHHHHHHHHHHT-TCEEESSCCEEEEEEETTE---EEEEETTCCE-EEEESEEEEC
T ss_pred             ----------------------HHHHHHHHHHHHHC-CCEEEeCCEEEEEEEeCCe---EEEEEeCCcE-EEEcCEEEEC
Confidence                                  01223445555555 78898885 9999877664   4455678863 5779999999


Q ss_pred             cCCcccc
Q 010623          219 DGCFSNL  225 (506)
Q Consensus       219 dG~~S~v  225 (506)
                      +|..+..
T Consensus       260 ~G~~p~~  266 (463)
T 2r9z_A          260 VGRAPNT  266 (463)
T ss_dssp             SCEEESC
T ss_pred             CCCCcCC
Confidence            9988765

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=98.10  E-value=1.8e-05  Score=83.21  Aligned_cols=58  Identities=16%  Similarity=0.206  Sum_probs=44.0

Q ss_pred             HHHHHHHcCCCEEEEece-EEEEEeeC----CeEEEEEEEeCCccEEEEEc-CeEEeecCCccc
Q 010623          167 RLREKAASLPNVRLEQGT-VTSLLEEK----GTIKGVQYKTKAGEELTAYA-PLTIVCDGCFSN  224 (506)
Q Consensus       167 ~L~~~~~~~~~v~i~~~~-v~~~~~~~----~~v~~v~v~~~~G~~~~i~a-~~vV~AdG~~S~  224 (506)
                      .+...+.+.++++++.++ |+++..++    ++++||++.+.+|+..+++| +-||.|.|+...
T Consensus       235 ~~l~~~~~~~nl~i~~~~~v~~l~~~~~~~~~~~~GV~~~~~~g~~~~v~A~k~VILaaG~~~s  298 (587)
T 1gpe_A          235 AWLLPNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAIS  298 (587)
T ss_dssp             HHTTTTTTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTH
T ss_pred             HHHHHhhcCCCcEEEcCCEEEEEEECCCCCCCEEEEEEEEeCCCcEEEEEecccEEEccCCCCC
Confidence            333333445689999885 99998663    47889998766788788999 999999999754

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.10  E-value=4.3e-05  Score=73.37  Aligned_cols=97  Identities=18%  Similarity=0.139  Sum_probs=71.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||+|++|+-+|..|++.|.+|+++++.+....       .                                  
T Consensus       143 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-------~----------------------------------  181 (311)
T 2q0l_A          143 NKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFRC-------A----------------------------------  181 (311)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCCS-------C----------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccCC-------C----------------------------------
Confidence            36899999999999999999999999999998753210       0                                  


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEe
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIV  217 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~  217 (506)
                                                ..+.+.+.+..+++++.++ ++++..+++++.++++.. .+|++.++.+|.||.
T Consensus       182 --------------------------~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~  235 (311)
T 2q0l_A          182 --------------------------PITLEHAKNNDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFI  235 (311)
T ss_dssp             --------------------------HHHHHHHHTCTTEEEETTEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEE
T ss_pred             --------------------------HHHHHHHhhCCCeEEEeCCEEEEEECCCCcEeEEEEEecCCCceEEEecCEEEE
Confidence                                      0012223332389998874 899987767666677654 367666788999999


Q ss_pred             ecCCcc
Q 010623          218 CDGCFS  223 (506)
Q Consensus       218 AdG~~S  223 (506)
                      |.|...
T Consensus       236 a~G~~p  241 (311)
T 2q0l_A          236 FVGYDV  241 (311)
T ss_dssp             CSCEEE
T ss_pred             EecCcc
Confidence            999643

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.10  E-value=5.9e-06  Score=85.16  Aligned_cols=38  Identities=26%  Similarity=0.461  Sum_probs=33.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCC
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKD--GRRVHVIERDLSE   95 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~~~   95 (506)
                      +..+||+|||||++|+++|..|++.  |.+|+|+|+.+..
T Consensus         9 ~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~   48 (493)
T 1m6i_A            9 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   48 (493)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            4468999999999999999999887  8999999998643

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.09  E-value=2.1e-05  Score=80.68  Aligned_cols=105  Identities=14%  Similarity=0.232  Sum_probs=73.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.....     +.                                  
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----~~----------------------------------  223 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS-----MD----------------------------------  223 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS-----SC----------------------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccc-----cC----------------------------------
Confidence            458999999999999999999999999999998532110     00                                  


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEee-CCeEEEEEEEe-CCccEEEEEcCeEE
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEE-KGTIKGVQYKT-KAGEELTAYAPLTI  216 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~-~~~v~~v~v~~-~~G~~~~i~a~~vV  216 (506)
                                            ..+.+.+.+.+++. +++++.++ |+++..+ +++...+++.+ .+|+..++.+|.||
T Consensus       224 ----------------------~~~~~~l~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv  280 (478)
T 1v59_A          224 ----------------------GEVAKATQKFLKKQ-GLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLL  280 (478)
T ss_dssp             ----------------------HHHHHHHHHHHHHT-TCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEE
T ss_pred             ----------------------HHHHHHHHHHHHHC-CCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEE
Confidence                                  12344555666666 88998884 8998862 33333355442 23433467899999


Q ss_pred             eecCCcccch
Q 010623          217 VCDGCFSNLR  226 (506)
Q Consensus       217 ~AdG~~S~vR  226 (506)
                      .|+|......
T Consensus       281 ~a~G~~p~~~  290 (478)
T 1v59_A          281 VAVGRRPYIA  290 (478)
T ss_dssp             ECSCEEECCT
T ss_pred             ECCCCCcCCC
Confidence            9999887654

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=98.09  E-value=3.1e-06  Score=87.22  Aligned_cols=40  Identities=33%  Similarity=0.385  Sum_probs=35.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD   97 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~   97 (506)
                      +++.||+|||||++||++|+.|++.|++|+|+|+.+....
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG   48 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGG   48 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence            3468999999999999999999999999999999876443

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.08  E-value=1.2e-05  Score=81.79  Aligned_cols=101  Identities=17%  Similarity=0.176  Sum_probs=72.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.....     +             .                     
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----~-------------~---------------------  207 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-----F-------------D---------------------  207 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-----S-------------C---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhh-----h-------------h---------------------
Confidence            358999999999999999999999999999987531100     0             0                     


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                            ..+.+.+.+.+++. +++++.++ |+++..++++.  +.+...+|+  ++.+|.||.|
T Consensus       208 ----------------------~~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~--~~v~~~~g~--~i~~D~vv~a  260 (450)
T 1ges_A          208 ----------------------PMISETLVEVMNAE-GPQLHTNAIPKAVVKNTDGS--LTLELEDGR--SETVDCLIWA  260 (450)
T ss_dssp             ----------------------HHHHHHHHHHHHHH-SCEEECSCCEEEEEECTTSC--EEEEETTSC--EEEESEEEEC
T ss_pred             ----------------------HHHHHHHHHHHHHC-CCEEEeCCEEEEEEEeCCcE--EEEEECCCc--EEEcCEEEEC
Confidence                                  01233445555555 78888884 99998765432  344467786  4679999999


Q ss_pred             cCCcccch
Q 010623          219 DGCFSNLR  226 (506)
Q Consensus       219 dG~~S~vR  226 (506)
                      +|..+.+.
T Consensus       261 ~G~~p~~~  268 (450)
T 1ges_A          261 IGREPAND  268 (450)
T ss_dssp             SCEEESCT
T ss_pred             CCCCcCCC
Confidence            99887653

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.08  E-value=3.5e-06  Score=85.02  Aligned_cols=38  Identities=29%  Similarity=0.414  Sum_probs=34.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC-CcEEEEecCCCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDG-RRVHVIERDLSEP   96 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G-~~v~vvE~~~~~~   96 (506)
                      .++||+|||||++||++|+.|+++| ++|+|+|+++...
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~G   43 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVG   43 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCC
Confidence            3589999999999999999999999 9999999987553

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.08  E-value=3.1e-05  Score=77.84  Aligned_cols=101  Identities=21%  Similarity=0.293  Sum_probs=75.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||..|+-+|..|++.|.+|+++|+.+....+.                                        
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~----------------------------------------  191 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARV----------------------------------------  191 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhh----------------------------------------
Confidence            4579999999999999999999999999999986421100                                        


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                          ....+.+.+.+.+++. |++++.++ |+++..+++++.+|+  ..+|++  +.||.||.|
T Consensus       192 --------------------~~~~~~~~l~~~l~~~-GV~i~~~~~v~~i~~~~~~v~~v~--l~dG~~--i~aD~Vv~a  246 (415)
T 3lxd_A          192 --------------------AGEALSEFYQAEHRAH-GVDLRTGAAMDCIEGDGTKVTGVR--MQDGSV--IPADIVIVG  246 (415)
T ss_dssp             --------------------SCHHHHHHHHHHHHHT-TCEEEETCCEEEEEESSSBEEEEE--ESSSCE--EECSEEEEC
T ss_pred             --------------------cCHHHHHHHHHHHHhC-CCEEEECCEEEEEEecCCcEEEEE--eCCCCE--EEcCEEEEC
Confidence                                0112445566666666 78888875 999988777665554  567864  679999999


Q ss_pred             cCCcccc
Q 010623          219 DGCFSNL  225 (506)
Q Consensus       219 dG~~S~v  225 (506)
                      .|.....
T Consensus       247 ~G~~p~~  253 (415)
T 3lxd_A          247 IGIVPCV  253 (415)
T ss_dssp             SCCEESC
T ss_pred             CCCccCh
Confidence            9987754

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.08  E-value=2.9e-06  Score=83.60  Aligned_cols=37  Identities=27%  Similarity=0.514  Sum_probs=33.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERD-LSE   95 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~-~~~   95 (506)
                      ..+||+|||||++||++|+.|+++|++|+|+|++ +..
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~v   80 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRV   80 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecccccc
Confidence            3589999999999999999999999999999998 543

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.07  E-value=3.1e-05  Score=77.63  Aligned_cols=101  Identities=25%  Similarity=0.386  Sum_probs=75.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||..|+-+|..|++.|.+|+++|+.+....+.                                        
T Consensus       142 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~----------------------------------------  181 (404)
T 3fg2_P          142 KKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARV----------------------------------------  181 (404)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhc----------------------------------------
Confidence            3579999999999999999999999999999885321100                                        


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                          ....+.+.+.+.+++. +++++.+ +|+++..+++++.+|+  ..+|+  ++.||.||.|
T Consensus       182 --------------------~~~~~~~~l~~~l~~~-GV~i~~~~~v~~i~~~~~~v~~V~--~~dG~--~i~aD~Vv~a  236 (404)
T 3fg2_P          182 --------------------VTPEISSYFHDRHSGA-GIRMHYGVRATEIAAEGDRVTGVV--LSDGN--TLPCDLVVVG  236 (404)
T ss_dssp             --------------------SCHHHHHHHHHHHHHT-TCEEECSCCEEEEEEETTEEEEEE--ETTSC--EEECSEEEEC
T ss_pred             --------------------cCHHHHHHHHHHHHhC-CcEEEECCEEEEEEecCCcEEEEE--eCCCC--EEEcCEEEEC
Confidence                                0112445566666666 8899888 4999988877665554  57786  4679999999


Q ss_pred             cCCcccc
Q 010623          219 DGCFSNL  225 (506)
Q Consensus       219 dG~~S~v  225 (506)
                      .|.....
T Consensus       237 ~G~~p~~  243 (404)
T 3fg2_P          237 VGVIPNV  243 (404)
T ss_dssp             CCEEECC
T ss_pred             cCCccCH
Confidence            9987653

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.07  E-value=2.8e-06  Score=85.07  Aligned_cols=38  Identities=34%  Similarity=0.498  Sum_probs=34.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCC
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKD-GRRVHVIERDLSE   95 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~-G~~v~vvE~~~~~   95 (506)
                      +.++||+|||||++||++|+.|++. |++|+|+|+++..
T Consensus         5 ~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~   43 (399)
T 1v0j_A            5 TARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHI   43 (399)
T ss_dssp             CCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSS
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            3468999999999999999999999 9999999998654

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.07  E-value=2.8e-05  Score=75.56  Aligned_cols=97  Identities=16%  Similarity=0.174  Sum_probs=72.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||+|++|+-+|..|++.|.+|+++++.+....                                          
T Consensus       173 ~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~------------------------------------------  210 (338)
T 3itj_A          173 NKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA------------------------------------------  210 (338)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS------------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC------------------------------------------
Confidence            45799999999999999999999999999998753211                                          


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEe
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIV  217 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~  217 (506)
                                               ...+.+.+.+..+++++.++ ++++..+++++.+|++.+ .+|+..++.+|.||.
T Consensus       211 -------------------------~~~~~~~l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~  265 (338)
T 3itj_A          211 -------------------------STIMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFY  265 (338)
T ss_dssp             -------------------------CHHHHHHHHHCTTEEEECSEEEEEEEESSSSEEEEEEEETTTTEEEEEECSEEEE
T ss_pred             -------------------------CHHHHHHHHhcCCeEEeecceeEEEEcccCcEEEEEEEECCCCceEEEEeCEEEE
Confidence                                     00122233333489998875 999988877777788776 356556788999999


Q ss_pred             ecCCcc
Q 010623          218 CDGCFS  223 (506)
Q Consensus       218 AdG~~S  223 (506)
                      |.|...
T Consensus       266 a~G~~p  271 (338)
T 3itj_A          266 AIGHTP  271 (338)
T ss_dssp             CSCEEE
T ss_pred             EeCCCC
Confidence            999643

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=98.06  E-value=5.3e-06  Score=86.49  Aligned_cols=57  Identities=23%  Similarity=0.320  Sum_probs=43.1

Q ss_pred             HHHHHHHcCCCEEEEece-EEEEEee----C-CeEEEEEEEeCCc-cEEEEEc-CeEEeecCCcc
Q 010623          167 RLREKAASLPNVRLEQGT-VTSLLEE----K-GTIKGVQYKTKAG-EELTAYA-PLTIVCDGCFS  223 (506)
Q Consensus       167 ~L~~~~~~~~~v~i~~~~-v~~~~~~----~-~~v~~v~v~~~~G-~~~~i~a-~~vV~AdG~~S  223 (506)
                      ..+..+.++++.++..++ |+++..+    + ++++||++...+| +.++++| +-||.|.|+..
T Consensus       212 ayL~p~~~r~NL~Vlt~a~V~rIl~~~~~~g~~rA~GVe~~~~~g~~~~~v~A~kEVILsAGai~  276 (566)
T 3fim_B          212 AYLRPAQSRPNLSVLINAQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVG  276 (566)
T ss_dssp             HTHHHHTTCTTEEEESSCEEEEEECCEEETTEEECCEEEEESSTTSCCEEEEEEEEEEECCHHHH
T ss_pred             HHhhhhccCCCeEEECCCEEEEEEeecCCCCCCEEEEEEEEECCCceEEEEEeeeEEEEecCCcC
Confidence            334444556799999885 9999876    3 5788999887666 7778889 78999999763

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.06  E-value=2.9e-06  Score=86.47  Aligned_cols=38  Identities=42%  Similarity=0.481  Sum_probs=34.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD   97 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~   97 (506)
                      ++||+|||||++||++|+.|++.|++|+|+|+++....
T Consensus         5 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG   42 (453)
T 2yg5_A            5 QRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGG   42 (453)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCC
Confidence            57999999999999999999999999999999876543

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.06  E-value=5.7e-06  Score=83.80  Aligned_cols=40  Identities=25%  Similarity=0.433  Sum_probs=35.8

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010623           57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP   96 (506)
Q Consensus        57 ~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~   96 (506)
                      |+.++||+|||||++|+++|..|++.|++|+|+|+++...
T Consensus         3 ~~~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~g   42 (433)
T 1d5t_A            3 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYG   42 (433)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCcc
Confidence            4456899999999999999999999999999999986544

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.04  E-value=3.7e-05  Score=79.13  Aligned_cols=103  Identities=25%  Similarity=0.370  Sum_probs=75.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||..|+-+|..|++.|.+|+++|+.+.....                  .                      
T Consensus       198 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------~----------------------  237 (491)
T 3urh_A          198 PASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGG------------------M----------------------  237 (491)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSS------------------S----------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccccc------------------C----------------------
Confidence            457999999999999999999999999999987532110                  0                      


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeC-CccEEEEEcCeEEe
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTK-AGEELTAYAPLTIV  217 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~-~G~~~~i~a~~vV~  217 (506)
                                           ...+.+.+.+.+++. +++++.++ ++++..+++.+. +++.+. +|+..++.+|.||.
T Consensus       238 ---------------------d~~~~~~l~~~l~~~-gV~v~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~i~~D~Vi~  294 (491)
T 3urh_A          238 ---------------------DGEVAKQLQRMLTKQ-GIDFKLGAKVTGAVKSGDGAK-VTFEPVKGGEATTLDAEVVLI  294 (491)
T ss_dssp             ---------------------CHHHHHHHHHHHHHT-TCEEECSEEEEEEEEETTEEE-EEEEETTSCCCEEEEESEEEE
T ss_pred             ---------------------CHHHHHHHHHHHHhC-CCEEEECCeEEEEEEeCCEEE-EEEEecCCCceEEEEcCEEEE
Confidence                                 012344555566665 78888884 999988877543 555543 36445688999999


Q ss_pred             ecCCcccc
Q 010623          218 CDGCFSNL  225 (506)
Q Consensus       218 AdG~~S~v  225 (506)
                      |+|.....
T Consensus       295 a~G~~p~~  302 (491)
T 3urh_A          295 ATGRKPST  302 (491)
T ss_dssp             CCCCEECC
T ss_pred             eeCCccCC
Confidence            99987654

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.03  E-value=4.2e-06  Score=83.21  Aligned_cols=38  Identities=39%  Similarity=0.616  Sum_probs=34.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE   95 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~   95 (506)
                      ...+||+|||||++||++|+.|++.|.+|+|+|+++..
T Consensus        27 ~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~   64 (397)
T 3hdq_A           27 SKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHI   64 (397)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCC
Confidence            34699999999999999999999999999999998653

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.02  E-value=4e-05  Score=78.92  Aligned_cols=102  Identities=23%  Similarity=0.297  Sum_probs=73.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||+.|+-+|..|++.|.+|+++|+.+.....     +                                   
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-----~-----------------------------------  213 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANL-----Q-----------------------------------  213 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTC-----C-----------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc-----C-----------------------------------
Confidence            468999999999999999999999999999998632110     0                                   


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                           ...+.+.+.+.+++.  +.++.++ ++++..+++++. ++..+.+|++.++.+|.||.|
T Consensus       214 ---------------------d~~~~~~l~~~l~~~--V~i~~~~~v~~i~~~~~~v~-v~~~~~~G~~~~i~~D~Vi~a  269 (492)
T 3ic9_A          214 ---------------------DEEMKRYAEKTFNEE--FYFDAKARVISTIEKEDAVE-VIYFDKSGQKTTESFQYVLAA  269 (492)
T ss_dssp             ---------------------CHHHHHHHHHHHHTT--SEEETTCEEEEEEECSSSEE-EEEECTTCCEEEEEESEEEEC
T ss_pred             ---------------------CHHHHHHHHHHHhhC--cEEEECCEEEEEEEcCCEEE-EEEEeCCCceEEEECCEEEEe
Confidence                                 002334455555553  7788774 889887776544 444444776567889999999


Q ss_pred             cCCcccc
Q 010623          219 DGCFSNL  225 (506)
Q Consensus       219 dG~~S~v  225 (506)
                      .|.....
T Consensus       270 ~G~~p~~  276 (492)
T 3ic9_A          270 TGRKANV  276 (492)
T ss_dssp             SCCEESC
T ss_pred             eCCccCC
Confidence            9987654

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.01  E-value=5.4e-05  Score=77.25  Aligned_cols=143  Identities=15%  Similarity=0.139  Sum_probs=80.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCCCCcc----cccccccchHHHHHHhCchhHHhhcccceecceE
Q 010623           60 DADVIVVGAGVAGAALANTLAKD--GRRVHVIERDLSEPDRI----VGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYA  133 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~~~~~~~----~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  133 (506)
                      .-+|+|||||.+|+-+|..|++.  |.+|++++|.+...+..    ......+...+.+..+.......-.....     
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~-----  301 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYH-----  301 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTG-----
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCccCCccchhccChhHHHHHhcCCHHHHHHHHHHhh-----
Confidence            45899999999999999999998  89999999986432211    11112233333333332111000000000     


Q ss_pred             EEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeC-CccEEEEE
Q 010623          134 LFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTK-AGEELTAY  211 (506)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~-~G~~~~i~  211 (506)
                              ...+.      ... ..+-.........+.+....++.++.++ |+++..+++++. +++.+. +|+..++.
T Consensus       302 --------~~~~~------~~~-~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~~~~~-v~~~~~~~g~~~~~~  365 (463)
T 3s5w_A          302 --------NTNYS------VVD-TDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQGIE-LALRDAGSGELSVET  365 (463)
T ss_dssp             --------GGTSS------CBC-HHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEETTEEE-EEEEETTTCCEEEEE
T ss_pred             --------ccCCC------cCC-HHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecCCEEE-EEEEEcCCCCeEEEE
Confidence                    00000      000 0000111222333444444588998886 899988777543 555543 78777789


Q ss_pred             cCeEEeecCCcc
Q 010623          212 APLTIVCDGCFS  223 (506)
Q Consensus       212 a~~vV~AdG~~S  223 (506)
                      +|.||.|+|...
T Consensus       366 ~D~Vv~AtG~~p  377 (463)
T 3s5w_A          366 YDAVILATGYER  377 (463)
T ss_dssp             ESEEEECCCEEC
T ss_pred             CCEEEEeeCCCC
Confidence            999999999643

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.01  E-value=4.3e-05  Score=79.29  Aligned_cols=103  Identities=17%  Similarity=0.213  Sum_probs=76.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||||..|+-+|..|++.|.+|+++|+.+.....                  .                       
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~------------------~-----------------------  253 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI------------------K-----------------------  253 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC------------------C-----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccccc------------------c-----------------------
Confidence            68999999999999999999999999999998532100                  0                       


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeC-CeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEK-GTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~-~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                          ...+.+.|.+.+++. |++++.+ +|+++..++ +++.++.+...+|+ .++.||.||.|
T Consensus       254 --------------------~~~~~~~l~~~l~~~-GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~-~~i~aD~Vv~A  311 (523)
T 1mo9_A          254 --------------------DNETRAYVLDRMKEQ-GMEIISGSNVTRIEEDANGRVQAVVAMTPNGE-MRIETDFVFLG  311 (523)
T ss_dssp             --------------------SHHHHHHHHHHHHHT-TCEEESSCEEEEEEECTTSBEEEEEEEETTEE-EEEECSCEEEC
T ss_pred             --------------------cHHHHHHHHHHHHhC-CcEEEECCEEEEEEEcCCCceEEEEEEECCCc-EEEEcCEEEEC
Confidence                                012344556666666 7889888 499998754 44444566677775 35789999999


Q ss_pred             cCCcccch
Q 010623          219 DGCFSNLR  226 (506)
Q Consensus       219 dG~~S~vR  226 (506)
                      +|..+..-
T Consensus       312 ~G~~p~~~  319 (523)
T 1mo9_A          312 LGEQPRSA  319 (523)
T ss_dssp             CCCEECCH
T ss_pred             cCCccCCc
Confidence            99988653

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.00  E-value=4.8e-05  Score=73.00  Aligned_cols=96  Identities=20%  Similarity=0.184  Sum_probs=73.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||+|+.|+-+|..|++.|.+|+++++.+....       .             .                    
T Consensus       147 ~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~-------~-------------~--------------------  186 (315)
T 3r9u_A          147 NKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFRA-------A-------------P--------------------  186 (315)
T ss_dssp             TSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCBS-------C-------------H--------------------
T ss_pred             cCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCC-------C-------------H--------------------
Confidence            35799999999999999999999999999998753200       0             0                    


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                             .+   +.+.+++. +++++.+ ++.++..+++++.++++...+|++.++.+|.||.|
T Consensus       187 -----------------------~~---~~~~~~~~-gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a  239 (315)
T 3r9u_A          187 -----------------------ST---VEKVKKNE-KIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTF  239 (315)
T ss_dssp             -----------------------HH---HHHHHHCT-TEEEECSCEEEEEEEETTEEEEEEEECTTSCEEEECCSCEEEC
T ss_pred             -----------------------HH---HHHHHhcC-CeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeecCeEEEE
Confidence                                   01   11112333 8999877 59999888878878888766887667889999999


Q ss_pred             cCCc
Q 010623          219 DGCF  222 (506)
Q Consensus       219 dG~~  222 (506)
                      .|..
T Consensus       240 ~G~~  243 (315)
T 3r9u_A          240 VGLN  243 (315)
T ss_dssp             SCEE
T ss_pred             EcCC
Confidence            9964

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=97.99  E-value=3.2e-06  Score=87.80  Aligned_cols=38  Identities=34%  Similarity=0.518  Sum_probs=34.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC-CcEEEEecCCCCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDG-RRVHVIERDLSEPD   97 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G-~~v~vvE~~~~~~~   97 (506)
                      ++||+|||||++||+||..|++.| ++|+|+|+++....
T Consensus         8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGG   46 (516)
T 1rsg_A            8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGG   46 (516)
T ss_dssp             EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBT
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCC
Confidence            479999999999999999999999 99999999876544

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.99  E-value=2.2e-05  Score=80.36  Aligned_cols=103  Identities=17%  Similarity=0.266  Sum_probs=73.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||+.|+-+|..|++.|.+|+|+|+.+...+.                  .                      
T Consensus       177 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~------------------~----------------------  216 (470)
T 1dxl_A          177 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT------------------M----------------------  216 (470)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT------------------S----------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc------------------c----------------------
Confidence            468999999999999999999999999999998532110                  0                      


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeC-CccEEEEEcCeEEe
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTK-AGEELTAYAPLTIV  217 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~-~G~~~~i~a~~vV~  217 (506)
                                           ...+.+.+.+.+++. +++++.++ ++++..+++++. +++.+. +|+..++.+|.||.
T Consensus       217 ---------------------~~~~~~~l~~~l~~~-gv~i~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~D~vv~  273 (470)
T 1dxl_A          217 ---------------------DAEIRKQFQRSLEKQ-GMKFKLKTKVVGVDTSGDGVK-LTVEPSAGGEQTIIEADVVLV  273 (470)
T ss_dssp             ---------------------CHHHHHHHHHHHHHS-SCCEECSEEEEEEECSSSSEE-EEEEESSSCCCEEEEESEEEC
T ss_pred             ---------------------cHHHHHHHHHHHHHc-CCEEEeCCEEEEEEEcCCeEE-EEEEecCCCcceEEECCEEEE
Confidence                                 002334555566666 78888884 999887655432 444432 45434678999999


Q ss_pred             ecCCcccc
Q 010623          218 CDGCFSNL  225 (506)
Q Consensus       218 AdG~~S~v  225 (506)
                      |.|.....
T Consensus       274 a~G~~p~~  281 (470)
T 1dxl_A          274 SAGRTPFT  281 (470)
T ss_dssp             CCCEEECC
T ss_pred             CCCCCcCC
Confidence            99987754

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.95  E-value=1.7e-05  Score=80.86  Aligned_cols=99  Identities=22%  Similarity=0.279  Sum_probs=70.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+...+.     +             .                     
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----~-------------~---------------------  211 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-----Y-------------D---------------------  211 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-----S-------------C---------------------
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccc-----c-------------C---------------------
Confidence            358999999999999999999999999999998532110     0             0                     


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                            ..+.+.+.+.+++. +++++.+ +|+++..  ++   +.+...+|+..++.+|.||.|
T Consensus       212 ----------------------~~~~~~l~~~l~~~-gv~i~~~~~v~~i~~--~~---v~v~~~~G~~~~i~~D~vv~a  263 (458)
T 1lvl_A          212 ----------------------SELTAPVAESLKKL-GIALHLGHSVEGYEN--GC---LLANDGKGGQLRLEADRVLVA  263 (458)
T ss_dssp             ----------------------HHHHHHHHHHHHHH-TCEEETTCEEEEEET--TE---EEEECSSSCCCEECCSCEEEC
T ss_pred             ----------------------HHHHHHHHHHHHHC-CCEEEECCEEEEEEe--CC---EEEEECCCceEEEECCEEEEC
Confidence                                  01233444455555 7888888 4888876  33   334445564345789999999


Q ss_pred             cCCcccc
Q 010623          219 DGCFSNL  225 (506)
Q Consensus       219 dG~~S~v  225 (506)
                      +|.....
T Consensus       264 ~G~~p~~  270 (458)
T 1lvl_A          264 VGRRPRT  270 (458)
T ss_dssp             CCEEECC
T ss_pred             cCCCcCC
Confidence            9987654

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=97.95  E-value=3.9e-05  Score=74.01  Aligned_cols=95  Identities=22%  Similarity=0.286  Sum_probs=69.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||||++|+-+|..|++.|.+|+++++.+....                    .                      
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~--------------------~----------------------  193 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMC--------------------E----------------------  193 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCS--------------------C----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCC--------------------C----------------------
Confidence            5799999999999999999999999999998752100                    0                      


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEee
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVC  218 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~A  218 (506)
                                               ..+.+.+.+. +++++.++ ++++..+++++.++++.+ .+|+..++.+|.||.|
T Consensus       194 -------------------------~~l~~~l~~~-gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a  247 (319)
T 3cty_A          194 -------------------------NAYVQEIKKR-NIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIY  247 (319)
T ss_dssp             -------------------------HHHHHHHHHT-TCCEECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCSEEEEC
T ss_pred             -------------------------HHHHHHHhcC-CcEEEcCCeEEEEecCCceEEEEEEEEcCCCceEEEecCEEEEe
Confidence                                     0112222233 78888774 899887766566777764 4676667889999999


Q ss_pred             cCCcc
Q 010623          219 DGCFS  223 (506)
Q Consensus       219 dG~~S  223 (506)
                      .|...
T Consensus       248 ~G~~p  252 (319)
T 3cty_A          248 VGLIP  252 (319)
T ss_dssp             CCEEE
T ss_pred             eCCcc
Confidence            98654

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.94  E-value=5.9e-05  Score=77.28  Aligned_cols=103  Identities=17%  Similarity=0.172  Sum_probs=72.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||+.|+-+|..|++.|.+|+++|+.+...++.                 +                      
T Consensus       178 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------~----------------------  218 (474)
T 1zmd_A          178 PEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVG-----------------I----------------------  218 (474)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSS-----------------C----------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcc-----------------c----------------------
Confidence            3579999999999999999999999999999985321100                 0                      


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEE---eCCccEEEEEcCeE
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYK---TKAGEELTAYAPLT  215 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~---~~~G~~~~i~a~~v  215 (506)
                                           ..++.+.+.+.+++. +++++.++ |+++..++++...+++.   +.++  .++.+|.|
T Consensus       219 ---------------------~~~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~--~~i~~D~v  274 (474)
T 1zmd_A          219 ---------------------DMEISKNFQRILQKQ-GFKFKLNTKVTGATKKSDGKIDVSIEAASGGKA--EVITCDVL  274 (474)
T ss_dssp             ---------------------CHHHHHHHHHHHHHT-TCEEECSEEEEEEEECTTSCEEEEEEETTSCCC--EEEEESEE
T ss_pred             ---------------------CHHHHHHHHHHHHHC-CCEEEeCceEEEEEEcCCceEEEEEEecCCCCc--eEEEcCEE
Confidence                                 012334555666666 78998885 99998776541224443   2334  35779999


Q ss_pred             EeecCCcccc
Q 010623          216 IVCDGCFSNL  225 (506)
Q Consensus       216 V~AdG~~S~v  225 (506)
                      |.|+|.....
T Consensus       275 v~a~G~~p~~  284 (474)
T 1zmd_A          275 LVCIGRRPFT  284 (474)
T ss_dssp             EECSCEEECC
T ss_pred             EECcCCCcCC
Confidence            9999987654

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.92  E-value=5.7e-05  Score=76.32  Aligned_cols=101  Identities=21%  Similarity=0.277  Sum_probs=72.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||+.|+-+|..|++.|.+|+++|+.+....+.                                        
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~----------------------------------------  188 (431)
T 1q1r_A          149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERV----------------------------------------  188 (431)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccch----------------------------------------
Confidence            4589999999999999999999999999999875321100                                        


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEe--eCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLE--EKGTIKGVQYKTKAGEELTAYAPLTI  216 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~--~~~~v~~v~v~~~~G~~~~i~a~~vV  216 (506)
                                          ....+.+.+.+.+++. |++++.++ ++++..  +++++.+|+  ..+|+  ++.+|.||
T Consensus       189 --------------------~~~~~~~~l~~~l~~~-GV~i~~~~~v~~i~~~~~~~~v~~v~--~~~G~--~i~~D~Vv  243 (431)
T 1q1r_A          189 --------------------TAPPVSAFYEHLHREA-GVDIRTGTQVCGFEMSTDQQKVTAVL--CEDGT--RLPADLVI  243 (431)
T ss_dssp             --------------------SCHHHHHHHHHHHHHH-TCEEECSCCEEEEEECTTTCCEEEEE--ETTSC--EEECSEEE
T ss_pred             --------------------hhHHHHHHHHHHHHhC-CeEEEeCCEEEEEEeccCCCcEEEEE--eCCCC--EEEcCEEE
Confidence                                0012333445555555 78888884 999886  455554444  56776  36799999


Q ss_pred             eecCCcccc
Q 010623          217 VCDGCFSNL  225 (506)
Q Consensus       217 ~AdG~~S~v  225 (506)
                      .|.|.....
T Consensus       244 ~a~G~~p~~  252 (431)
T 1q1r_A          244 AGIGLIPNC  252 (431)
T ss_dssp             ECCCEEECC
T ss_pred             ECCCCCcCc
Confidence            999987653

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.92  E-value=6.8e-05  Score=72.72  Aligned_cols=97  Identities=20%  Similarity=0.244  Sum_probs=70.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||+|.+|+-+|..|++.|.+|+++++.+....                    .                     
T Consensus       159 ~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~--------------------~---------------------  197 (333)
T 1vdc_A          159 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA--------------------S---------------------  197 (333)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS--------------------C---------------------
T ss_pred             CCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCc--------------------c---------------------
Confidence            45899999999999999999999999999999853210                    0                     


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCC--eEEEEEEEe-CCccEEEEEcCeE
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKG--TIKGVQYKT-KAGEELTAYAPLT  215 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~--~v~~v~v~~-~~G~~~~i~a~~v  215 (506)
                                                +.+.+.+.+..+++++.++ ++++..+++  ++.++++.+ .+|+..++.+|.|
T Consensus       198 --------------------------~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~v  251 (333)
T 1vdc_A          198 --------------------------KIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGL  251 (333)
T ss_dssp             --------------------------HHHHHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEE
T ss_pred             --------------------------HHHHHHHHhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEE
Confidence                                      0111222222389998874 888887664  666677765 3676567889999


Q ss_pred             EeecCCcc
Q 010623          216 IVCDGCFS  223 (506)
Q Consensus       216 V~AdG~~S  223 (506)
                      |.|.|...
T Consensus       252 i~a~G~~p  259 (333)
T 1vdc_A          252 FFAIGHEP  259 (333)
T ss_dssp             EECSCEEE
T ss_pred             EEEeCCcc
Confidence            99999654

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.91  E-value=0.0001  Score=71.20  Aligned_cols=95  Identities=22%  Similarity=0.271  Sum_probs=69.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||+|.+|+-+|..|++.|.+|+++++.+....       .                                   
T Consensus       153 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-------~-----------------------------------  190 (325)
T 2q7v_A          153 KKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRA-------N-----------------------------------  190 (325)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCS-------C-----------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCc-------c-----------------------------------
Confidence            5799999999999999999999999999998753210       0                                   


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEee
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVC  218 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~A  218 (506)
                                               ..+.+.+.+..+++++.++ ++++..+ +++.+|++.+ .+|+..++.+|.||.|
T Consensus       191 -------------------------~~~~~~l~~~~gv~i~~~~~v~~i~~~-~~v~~v~~~~~~~g~~~~i~~D~vi~a  244 (325)
T 2q7v_A          191 -------------------------KVAQARAFANPKMKFIWDTAVEEIQGA-DSVSGVKLRNLKTGEVSELATDGVFIF  244 (325)
T ss_dssp             -------------------------HHHHHHHHTCTTEEEECSEEEEEEEES-SSEEEEEEEETTTCCEEEEECSEEEEC
T ss_pred             -------------------------hHHHHHHHhcCCceEecCCceEEEccC-CcEEEEEEEECCCCcEEEEEcCEEEEc
Confidence                                     0112223333489998875 8888764 5565677764 4677667889999999


Q ss_pred             cCCcc
Q 010623          219 DGCFS  223 (506)
Q Consensus       219 dG~~S  223 (506)
                      .|...
T Consensus       245 ~G~~p  249 (325)
T 2q7v_A          245 IGHVP  249 (325)
T ss_dssp             SCEEE
T ss_pred             cCCCC
Confidence            98643

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.91  E-value=5.1e-05  Score=77.53  Aligned_cols=102  Identities=19%  Similarity=0.245  Sum_probs=71.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||..|+-+|..|++.|.+|+|+|+.+...+.                  +.                     
T Consensus       171 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------~~---------------------  211 (464)
T 2a8x_A          171 PKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPN------------------ED---------------------  211 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT------------------SC---------------------
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccccc------------------cC---------------------
Confidence            358999999999999999999999999999998532110                  00                     


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                            ..+.+.+.+.+++. +++++.+ +++++..+++++. +++. .+|+..++.+|.||.|
T Consensus       212 ----------------------~~~~~~l~~~l~~~-gv~i~~~~~v~~i~~~~~~~~-v~~~-~~g~~~~~~~D~vv~a  266 (464)
T 2a8x_A          212 ----------------------ADVSKEIEKQFKKL-GVTILTATKVESIADGGSQVT-VTVT-KDGVAQELKAEKVLQA  266 (464)
T ss_dssp             ----------------------HHHHHHHHHHHHHH-TCEEECSCEEEEEEECSSCEE-EEEE-SSSCEEEEEESEEEEC
T ss_pred             ----------------------HHHHHHHHHHHHHc-CCEEEeCcEEEEEEEcCCeEE-EEEE-cCCceEEEEcCEEEEC
Confidence                                  01223344455555 7888887 4999887665432 4332 2565456889999999


Q ss_pred             cCCcccc
Q 010623          219 DGCFSNL  225 (506)
Q Consensus       219 dG~~S~v  225 (506)
                      .|.....
T Consensus       267 ~G~~p~~  273 (464)
T 2a8x_A          267 IGFAPNV  273 (464)
T ss_dssp             SCEEECC
T ss_pred             CCCCccC
Confidence            9987654

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.90  E-value=5.6e-05  Score=77.51  Aligned_cols=101  Identities=17%  Similarity=0.204  Sum_probs=71.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||..|+-+|..|++.|.+|+++|+.+.....     +             .                     
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-----~-------------d---------------------  225 (479)
T 2hqm_A          185 PKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRK-----F-------------D---------------------  225 (479)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-----S-------------C---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccc-----c-------------C---------------------
Confidence            357999999999999999999999999999998531110     0             0                     


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCe-EEEEEEEeCCccEEEEEcCeEEe
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGT-IKGVQYKTKAGEELTAYAPLTIV  217 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~-v~~v~v~~~~G~~~~i~a~~vV~  217 (506)
                                            ..+.+.+.+.+++. +++++.++ |+++..++++ +  +.+...+|+ .++.+|.||.
T Consensus       226 ----------------------~~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~--~~v~~~~G~-~~i~~D~vv~  279 (479)
T 2hqm_A          226 ----------------------ECIQNTITDHYVKE-GINVHKLSKIVKVEKNVETDK--LKIHMNDSK-SIDDVDELIW  279 (479)
T ss_dssp             ----------------------HHHHHHHHHHHHHH-TCEEECSCCEEEEEECC-CCC--EEEEETTSC-EEEEESEEEE
T ss_pred             ----------------------HHHHHHHHHHHHhC-CeEEEeCCEEEEEEEcCCCcE--EEEEECCCc-EEEEcCEEEE
Confidence                                  01223444445555 78898885 9999865442 2  334456773 3577999999


Q ss_pred             ecCCcccc
Q 010623          218 CDGCFSNL  225 (506)
Q Consensus       218 AdG~~S~v  225 (506)
                      |.|.....
T Consensus       280 a~G~~p~~  287 (479)
T 2hqm_A          280 TIGRKSHL  287 (479)
T ss_dssp             CSCEEECC
T ss_pred             CCCCCCcc
Confidence            99987765

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.90  E-value=0.0001  Score=75.52  Aligned_cols=102  Identities=21%  Similarity=0.211  Sum_probs=74.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||+.|+-+|..|++.|.+|+++|+.+.....                                         
T Consensus       180 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  218 (476)
T 3lad_A          180 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA-----------------------------------------  218 (476)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-----------------------------------------
Confidence            457999999999999999999999999999997531100                                         


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                          ....+.+.+.+.+++. ++.++.+ +++++..+++++. +++.+.+| ..++.+|.||.|
T Consensus       219 --------------------~~~~~~~~l~~~l~~~-Gv~v~~~~~v~~i~~~~~~~~-v~~~~~~g-~~~~~~D~vi~a  275 (476)
T 3lad_A          219 --------------------VDEQVAKEAQKILTKQ-GLKILLGARVTGTEVKNKQVT-VKFVDAEG-EKSQAFDKLIVA  275 (476)
T ss_dssp             --------------------SCHHHHHHHHHHHHHT-TEEEEETCEEEEEEECSSCEE-EEEESSSE-EEEEEESEEEEC
T ss_pred             --------------------cCHHHHHHHHHHHHhC-CCEEEECCEEEEEEEcCCEEE-EEEEeCCC-cEEEECCEEEEe
Confidence                                0012344555566665 8999888 4999987766543 55555455 346789999999


Q ss_pred             cCCcccc
Q 010623          219 DGCFSNL  225 (506)
Q Consensus       219 dG~~S~v  225 (506)
                      .|.....
T Consensus       276 ~G~~p~~  282 (476)
T 3lad_A          276 VGRRPVT  282 (476)
T ss_dssp             SCEEECC
T ss_pred             eCCcccC
Confidence            9987654

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.89  E-value=7.3e-05  Score=76.88  Aligned_cols=100  Identities=12%  Similarity=0.149  Sum_probs=73.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC---CCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEE
Q 010623           60 DADVIVVGAGVAGAALANTLAKD---GRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFK  136 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~---G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  136 (506)
                      .-+|+|||||..|+-+|..|++.   |.+|+++|+.+...+.     +                                
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~-----~--------------------------------  229 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG-----F--------------------------------  229 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT-----S--------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccc-----c--------------------------------
Confidence            35899999999999999999999   9999999998531100     0                                


Q ss_pred             CCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeE
Q 010623          137 DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLT  215 (506)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~v  215 (506)
                                              ...+.+.+.+.+++. +++++.++ |+++..++++.  +.+...+|+  ++.+|.|
T Consensus       230 ------------------------d~~~~~~l~~~l~~~-GV~i~~~~~v~~i~~~~~~~--~~v~~~~G~--~i~~D~v  280 (490)
T 1fec_A          230 ------------------------DSELRKQLTEQLRAN-GINVRTHENPAKVTKNADGT--RHVVFESGA--EADYDVV  280 (490)
T ss_dssp             ------------------------CHHHHHHHHHHHHHT-TEEEEETCCEEEEEECTTSC--EEEEETTSC--EEEESEE
T ss_pred             ------------------------CHHHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCCE--EEEEECCCc--EEEcCEE
Confidence                                    002334556666666 89999885 99998765432  334466786  4679999


Q ss_pred             EeecCCcccc
Q 010623          216 IVCDGCFSNL  225 (506)
Q Consensus       216 V~AdG~~S~v  225 (506)
                      |.|.|.....
T Consensus       281 v~a~G~~p~~  290 (490)
T 1fec_A          281 MLAIGRVPRS  290 (490)
T ss_dssp             EECSCEEESC
T ss_pred             EEccCCCcCc
Confidence            9999987754

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=97.88  E-value=7e-06  Score=81.17  Aligned_cols=36  Identities=42%  Similarity=0.514  Sum_probs=33.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP   96 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~   96 (506)
                      +||+|||||++|+++|..|++.|++|+|+|+++...
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~G   37 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIG   37 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence            699999999999999999999999999999986543

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=97.87  E-value=7.8e-05  Score=72.39  Aligned_cols=99  Identities=17%  Similarity=0.214  Sum_probs=71.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||.+|+-+|..|++.|.+|+++++.+.....                   .                     
T Consensus       152 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~~-------------------~---------------------  191 (335)
T 2zbw_A          152 GKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRAH-------------------E---------------------  191 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCSC-------------------H---------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCcc-------------------H---------------------
Confidence            358999999999999999999999999999987532100                   0                     


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeC-CccEEEEEcCeEEe
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTK-AGEELTAYAPLTIV  217 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~-~G~~~~i~a~~vV~  217 (506)
                                             .+.+.|.+.+++. +++++.+ ++.++..+ +++.+|++... +|+..++.+|.||.
T Consensus       192 -----------------------~~~~~l~~~l~~~-gv~v~~~~~v~~i~~~-~~~~~v~~~~~~~g~~~~i~~D~vi~  246 (335)
T 2zbw_A          192 -----------------------ASVKELMKAHEEG-RLEVLTPYELRRVEGD-ERVRWAVVFHNQTQEELALEVDAVLI  246 (335)
T ss_dssp             -----------------------HHHHHHHHHHHTT-SSEEETTEEEEEEEES-SSEEEEEEEETTTCCEEEEECSEEEE
T ss_pred             -----------------------HHHHHHHhccccC-CeEEecCCcceeEccC-CCeeEEEEEECCCCceEEEecCEEEE
Confidence                                   0112344455555 7888888 48888774 55555666543 67656788999999


Q ss_pred             ecCCcc
Q 010623          218 CDGCFS  223 (506)
Q Consensus       218 AdG~~S  223 (506)
                      |.|...
T Consensus       247 a~G~~p  252 (335)
T 2zbw_A          247 LAGYIT  252 (335)
T ss_dssp             CCCEEE
T ss_pred             eecCCC
Confidence            999754

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.87  E-value=8.6e-05  Score=75.53  Aligned_cols=100  Identities=21%  Similarity=0.331  Sum_probs=72.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||..|+-+|..|++.|.+|+++|+.+....+.                 +                      
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------~----------------------  189 (452)
T 2cdu_A          149 AKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKY-----------------F----------------------  189 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTTT-----------------S----------------------
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhhh-----------------h----------------------
Confidence            3579999999999999999999999999999975321100                 0                      


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                           ...+.+.+.+.+++. +++++.++ |+++..+++++..+.  . +|+  ++.+|.||.|
T Consensus       190 ---------------------~~~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~v~~v~--~-~g~--~i~~D~vv~a  242 (452)
T 2cdu_A          190 ---------------------DKEFTDILAKDYEAH-GVNLVLGSKVAAFEEVDDEIITKT--L-DGK--EIKSDIAILC  242 (452)
T ss_dssp             ---------------------CHHHHHHHHHHHHHT-TCEEEESSCEEEEEEETTEEEEEE--T-TSC--EEEESEEEEC
T ss_pred             ---------------------hhhHHHHHHHHHHHC-CCEEEcCCeeEEEEcCCCeEEEEE--e-CCC--EEECCEEEEC
Confidence                                 012344555666666 78888884 999987666554333  3 665  4679999999


Q ss_pred             cCCcccc
Q 010623          219 DGCFSNL  225 (506)
Q Consensus       219 dG~~S~v  225 (506)
                      .|.....
T Consensus       243 ~G~~p~~  249 (452)
T 2cdu_A          243 IGFRPNT  249 (452)
T ss_dssp             CCEEECC
T ss_pred             cCCCCCH
Confidence            9987654

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.87  E-value=8.2e-05  Score=76.73  Aligned_cols=101  Identities=14%  Similarity=0.176  Sum_probs=72.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||+.|+-+|..|++.|.+|+++|+.+.....                  +.                     
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------~d---------------------  216 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK------------------FD---------------------  216 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT------------------SC---------------------
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCcc------------------cc---------------------
Confidence            457999999999999999999999999999997531110                  00                     


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                            ..+.+.+.+.+++. +++++.++ ++++..++++.  +.+...+|++ ++.+|.||.|
T Consensus       217 ----------------------~~~~~~l~~~l~~~-gv~i~~~~~v~~i~~~~~~~--~~v~~~~g~~-~~~~D~vi~a  270 (500)
T 1onf_A          217 ----------------------ESVINVLENDMKKN-NINIVTFADVVEIKKVSDKN--LSIHLSDGRI-YEHFDHVIYC  270 (500)
T ss_dssp             ----------------------HHHHHHHHHHHHHT-TCEEECSCCEEEEEESSTTC--EEEEETTSCE-EEEESEEEEC
T ss_pred             ----------------------hhhHHHHHHHHHhC-CCEEEECCEEEEEEEcCCce--EEEEECCCcE-EEECCEEEEC
Confidence                                  01333455556665 78888885 99998754331  3444667865 3779999999


Q ss_pred             cCCcccc
Q 010623          219 DGCFSNL  225 (506)
Q Consensus       219 dG~~S~v  225 (506)
                      .|.....
T Consensus       271 ~G~~p~~  277 (500)
T 1onf_A          271 VGRSPDT  277 (500)
T ss_dssp             CCBCCTT
T ss_pred             CCCCcCC
Confidence            9987654

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.85  E-value=4.6e-05  Score=76.48  Aligned_cols=100  Identities=26%  Similarity=0.330  Sum_probs=71.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||..|+-+|..|++.|.+|+++|+.+....         +   .+                           
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~---------~---~~---------------------------  183 (410)
T 3ef6_A          143 ATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLV---------R---VL---------------------------  183 (410)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSH---------H---HH---------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccch---------h---hc---------------------------
Confidence            46899999999999999999999999999999853210         0   00                           


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                           ...+.+.+.+.+++. +++++.++ |+++..++ ++.  .+...+|++  +.||.||.|
T Consensus       184 ---------------------~~~~~~~l~~~l~~~-GV~i~~~~~v~~i~~~~-~~~--~v~~~dg~~--i~aD~Vv~a  236 (410)
T 3ef6_A          184 ---------------------GRRIGAWLRGLLTEL-GVQVELGTGVVGFSGEG-QLE--QVMASDGRS--FVADSALIC  236 (410)
T ss_dssp             ---------------------CHHHHHHHHHHHHHH-TCEEECSCCEEEEECSS-SCC--EEEETTSCE--EECSEEEEC
T ss_pred             ---------------------CHHHHHHHHHHHHHC-CCEEEeCCEEEEEeccC-cEE--EEEECCCCE--EEcCEEEEe
Confidence                                 012334455555555 88898775 88887654 332  344677864  669999999


Q ss_pred             cCCcccc
Q 010623          219 DGCFSNL  225 (506)
Q Consensus       219 dG~~S~v  225 (506)
                      .|.....
T Consensus       237 ~G~~p~~  243 (410)
T 3ef6_A          237 VGAEPAD  243 (410)
T ss_dssp             SCEEECC
T ss_pred             eCCeecH
Confidence            9988754

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=97.84  E-value=1.2e-05  Score=79.89  Aligned_cols=37  Identities=32%  Similarity=0.642  Sum_probs=33.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP   96 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~   96 (506)
                      ++||+|||||++|+++|..|++.|++|+|+|+++...
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~G   39 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG   39 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcC
Confidence            4799999999999999999999999999999986543

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.84  E-value=0.00017  Score=73.27  Aligned_cols=99  Identities=20%  Similarity=0.191  Sum_probs=73.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||..|+-+|..|++.|.+|+++|+.+......                                        
T Consensus       147 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~----------------------------------------  186 (452)
T 3oc4_A          147 SQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKY----------------------------------------  186 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTT----------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcccccc----------------------------------------
Confidence            3579999999999999999999999999999985321100                                        


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                          ....+.+.+.+.+++. +++++.++ |+++..+++++   .+..++|   ++.||.||.|
T Consensus       187 --------------------~d~~~~~~l~~~l~~~-GV~i~~~~~v~~i~~~~~~v---~v~~~~g---~i~aD~Vv~A  239 (452)
T 3oc4_A          187 --------------------FDKEMVAEVQKSLEKQ-AVIFHFEETVLGIEETANGI---VLETSEQ---EISCDSGIFA  239 (452)
T ss_dssp             --------------------CCHHHHHHHHHHHHTT-TEEEEETCCEEEEEECSSCE---EEEESSC---EEEESEEEEC
T ss_pred             --------------------CCHHHHHHHHHHHHHc-CCEEEeCCEEEEEEccCCeE---EEEECCC---EEEeCEEEEC
Confidence                                0012445666666666 89999885 99998766654   3445555   4679999999


Q ss_pred             cCCcccc
Q 010623          219 DGCFSNL  225 (506)
Q Consensus       219 dG~~S~v  225 (506)
                      .|.....
T Consensus       240 ~G~~p~~  246 (452)
T 3oc4_A          240 LNLHPQL  246 (452)
T ss_dssp             SCCBCCC
T ss_pred             cCCCCCh
Confidence            9987643

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.83  E-value=7.6e-05  Score=76.61  Aligned_cols=101  Identities=13%  Similarity=0.180  Sum_probs=72.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||..|+-+|..|++.|.+|+|+|+.+.....                  +.                     
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~------------------~~---------------------  225 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG------------------AD---------------------  225 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT------------------SC---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc------------------cC---------------------
Confidence            468999999999999999999999999999988532110                  00                     


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCC--ccEEEEEcCeEE
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKA--GEELTAYAPLTI  216 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~--G~~~~i~a~~vV  216 (506)
                                            ..+.+.+.+.+++. +++++.+ +++++..+++.+ .+++.+.+  |++  +.+|.||
T Consensus       226 ----------------------~~~~~~l~~~l~~~-gV~i~~~~~v~~i~~~~~~~-~v~~~~~~~~g~~--~~~D~vv  279 (482)
T 1ojt_A          226 ----------------------RDLVKVWQKQNEYR-FDNIMVNTKTVAVEPKEDGV-YVTFEGANAPKEP--QRYDAVL  279 (482)
T ss_dssp             ----------------------HHHHHHHHHHHGGG-EEEEECSCEEEEEEEETTEE-EEEEESSSCCSSC--EEESCEE
T ss_pred             ----------------------HHHHHHHHHHHHhc-CCEEEECCEEEEEEEcCCeE-EEEEeccCCCceE--EEcCEEE
Confidence                                  02334555666665 8999988 499998776643 24443211  543  5699999


Q ss_pred             eecCCcccc
Q 010623          217 VCDGCFSNL  225 (506)
Q Consensus       217 ~AdG~~S~v  225 (506)
                      .|.|.....
T Consensus       280 ~a~G~~p~~  288 (482)
T 1ojt_A          280 VAAGRAPNG  288 (482)
T ss_dssp             ECCCEEECG
T ss_pred             ECcCCCcCC
Confidence            999988765

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.82  E-value=1.2e-05  Score=82.88  Aligned_cols=38  Identities=37%  Similarity=0.524  Sum_probs=34.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD   97 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~   97 (506)
                      ..||+|||||++||++|..|+++|++|+|+|+++....
T Consensus        33 ~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg   70 (498)
T 2iid_A           33 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG   70 (498)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBT
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCC
Confidence            57999999999999999999999999999999875443

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.81  E-value=1.8e-05  Score=80.55  Aligned_cols=36  Identities=42%  Similarity=0.501  Sum_probs=33.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      ...||+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~  156 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDR  156 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            357999999999999999999999999999999864

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.81  E-value=1e-05  Score=83.33  Aligned_cols=34  Identities=29%  Similarity=0.471  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ++||+||||||+|+++|..|++.|++|+|+|+++
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~   41 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA   41 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            4899999999999999999999999999999964

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.81  E-value=0.00014  Score=72.81  Aligned_cols=96  Identities=25%  Similarity=0.304  Sum_probs=69.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||..|+-+|..|++.|.+|+++|+.+....+.                                        
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~----------------------------------------  184 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRA----------------------------------------  184 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTT----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccc----------------------------------------
Confidence            4689999999999999999999999999999985321100                                        


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                          ....+.+.+.+.+++. +++++.++ ++++.  ++   .|+  ..+|+  ++.||.||.|
T Consensus       185 --------------------~~~~~~~~l~~~l~~~-GV~i~~~~~v~~i~--~~---~v~--~~~g~--~i~~D~vi~a  234 (408)
T 2gqw_A          185 --------------------APATLADFVARYHAAQ-GVDLRFERSVTGSV--DG---VVL--LDDGT--RIAADMVVVG  234 (408)
T ss_dssp             --------------------SCHHHHHHHHHHHHHT-TCEEEESCCEEEEE--TT---EEE--ETTSC--EEECSEEEEC
T ss_pred             --------------------cCHHHHHHHHHHHHHc-CcEEEeCCEEEEEE--CC---EEE--ECCCC--EEEcCEEEEC
Confidence                                0012334555566666 78888884 98887  33   233  46776  4679999999


Q ss_pred             cCCcccc
Q 010623          219 DGCFSNL  225 (506)
Q Consensus       219 dG~~S~v  225 (506)
                      .|.....
T Consensus       235 ~G~~p~~  241 (408)
T 2gqw_A          235 IGVLAND  241 (408)
T ss_dssp             SCEEECC
T ss_pred             cCCCccH
Confidence            9987653

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.81  E-value=0.0001  Score=75.96  Aligned_cols=99  Identities=22%  Similarity=0.244  Sum_probs=73.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||..|+-+|..|++.|.+|+++|+.+.....     +                                   
T Consensus       182 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-----~-----------------------------------  221 (499)
T 1xdi_A          182 PDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPY-----E-----------------------------------  221 (499)
T ss_dssp             CSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCC-----S-----------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-----c-----------------------------------
Confidence            468999999999999999999999999999998532110     0                                   


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                           ...+.+.+.+.+++. |++++.++ |+++..++++   +.+.+.+|++  +.+|.||.|
T Consensus       222 ---------------------d~~~~~~l~~~l~~~-GV~i~~~~~V~~i~~~~~~---v~v~~~~g~~--i~aD~Vv~a  274 (499)
T 1xdi_A          222 ---------------------DADAALVLEESFAER-GVRLFKNARAASVTRTGAG---VLVTMTDGRT--VEGSHALMT  274 (499)
T ss_dssp             ---------------------SHHHHHHHHHHHHHT-TCEEETTCCEEEEEECSSS---EEEEETTSCE--EEESEEEEC
T ss_pred             ---------------------CHHHHHHHHHHHHHC-CCEEEeCCEEEEEEEeCCE---EEEEECCCcE--EEcCEEEEC
Confidence                                 002334555666666 88998885 9999877654   3455667763  679999999


Q ss_pred             cCCcccc
Q 010623          219 DGCFSNL  225 (506)
Q Consensus       219 dG~~S~v  225 (506)
                      .|..+..
T Consensus       275 ~G~~p~~  281 (499)
T 1xdi_A          275 IGSVPNT  281 (499)
T ss_dssp             CCEEECC
T ss_pred             CCCCcCC
Confidence            9988765

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.80  E-value=0.00011  Score=75.53  Aligned_cols=99  Identities=20%  Similarity=0.280  Sum_probs=71.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||..|+-+|..|++.|.+|+|+|+.+....+.                 +                      
T Consensus       194 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------~----------------------  234 (490)
T 2bc0_A          194 IKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGY-----------------Y----------------------  234 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT-----------------S----------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhhhH-----------------H----------------------
Confidence            4579999999999999999999999999999985321100                 0                      


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                           ...+.+.+.+.+++. +++++.++ ++++.. ++++..+.  . +|+  ++.+|.||.|
T Consensus       235 ---------------------~~~~~~~l~~~l~~~-GV~i~~~~~v~~i~~-~~~v~~v~--~-~g~--~i~~D~Vi~a  286 (490)
T 2bc0_A          235 ---------------------DRDLTDLMAKNMEEH-GIQLAFGETVKEVAG-NGKVEKII--T-DKN--EYDVDMVILA  286 (490)
T ss_dssp             ---------------------CHHHHHHHHHHHHTT-TCEEEETCCEEEEEC-SSSCCEEE--E-SSC--EEECSEEEEC
T ss_pred             ---------------------HHHHHHHHHHHHHhC-CeEEEeCCEEEEEEc-CCcEEEEE--E-CCc--EEECCEEEEC
Confidence                                 012444566666666 88998885 999876 44333333  2 565  4679999999


Q ss_pred             cCCcccc
Q 010623          219 DGCFSNL  225 (506)
Q Consensus       219 dG~~S~v  225 (506)
                      .|.....
T Consensus       287 ~G~~p~~  293 (490)
T 2bc0_A          287 VGFRPNT  293 (490)
T ss_dssp             CCEEECC
T ss_pred             CCCCcCh
Confidence            9987654

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=97.80  E-value=1.8e-05  Score=81.24  Aligned_cols=38  Identities=24%  Similarity=0.433  Sum_probs=34.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC-CcEEEEecCCCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDG-RRVHVIERDLSEP   96 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G-~~v~vvE~~~~~~   96 (506)
                      +.+||+|||||++||++|+.|+++| .+|+|+|+++...
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~G   46 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPG   46 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSS
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Confidence            3589999999999999999999999 7999999987543

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.79  E-value=0.00018  Score=74.55  Aligned_cols=95  Identities=24%  Similarity=0.284  Sum_probs=72.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||||.+|+-+|..|++.|.+|+++++.+....         .                                 
T Consensus       356 k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~---------~---------------------------------  393 (521)
T 1hyu_A          356 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---------D---------------------------------  393 (521)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS---------C---------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc---------C---------------------------------
Confidence            5799999999999999999999999999998753110         0                                 


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEee
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVC  218 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~A  218 (506)
                                               ..+.+.+.+..+++++.++ ++++..+++++.++++.+ .+|++.++.+|.||.|
T Consensus       394 -------------------------~~l~~~l~~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a  448 (521)
T 1hyu_A          394 -------------------------QVLQDKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQ  448 (521)
T ss_dssp             -------------------------HHHHHHHTTCTTEEEECSEEEEEEEECSSSEEEEEEEETTTCCEEEEECSEEEEC
T ss_pred             -------------------------HHHHHHHhcCCCcEEEeCCEEEEEEcCCCcEEEEEEEeCCCCceEEEEcCEEEEC
Confidence                                     0123334443589998885 889887777777787766 4677677899999999


Q ss_pred             cCCc
Q 010623          219 DGCF  222 (506)
Q Consensus       219 dG~~  222 (506)
                      .|..
T Consensus       449 ~G~~  452 (521)
T 1hyu_A          449 IGLL  452 (521)
T ss_dssp             CCEE
T ss_pred             cCCC
Confidence            9954

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.79  E-value=0.0001  Score=75.46  Aligned_cols=100  Identities=25%  Similarity=0.286  Sum_probs=73.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623           60 DADVIVVGAGVAGAALANTLAKD-GRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG  138 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~-G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (506)
                      .-+|+|||||.+|+-+|..|++. |.+|+++|+.+....+.                                       
T Consensus       159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~---------------------------------------  199 (472)
T 3iwa_A          159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGF---------------------------------------  199 (472)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTT---------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccc---------------------------------------
Confidence            35899999999999999999999 99999999875321100                                       


Q ss_pred             ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEe
Q 010623          139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV  217 (506)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~  217 (506)
                                           ....+.+.+.+.+++. +++++.+ +|+++..+++++.   +...+|+  ++.+|.||.
T Consensus       200 ---------------------~~~~~~~~l~~~l~~~-GV~i~~~~~v~~i~~~~~~v~---v~~~~g~--~i~aD~Vv~  252 (472)
T 3iwa_A          200 ---------------------TSKSLSQMLRHDLEKN-DVVVHTGEKVVRLEGENGKVA---RVITDKR--TLDADLVIL  252 (472)
T ss_dssp             ---------------------SCHHHHHHHHHHHHHT-TCEEECSCCEEEEEESSSBEE---EEEESSC--EEECSEEEE
T ss_pred             ---------------------cCHHHHHHHHHHHHhc-CCEEEeCCEEEEEEccCCeEE---EEEeCCC--EEEcCEEEE
Confidence                                 0012445566666666 7889888 4999987666543   4455676  467999999


Q ss_pred             ecCCcccc
Q 010623          218 CDGCFSNL  225 (506)
Q Consensus       218 AdG~~S~v  225 (506)
                      |.|.....
T Consensus       253 a~G~~p~~  260 (472)
T 3iwa_A          253 AAGVSPNT  260 (472)
T ss_dssp             CSCEEECC
T ss_pred             CCCCCcCH
Confidence            99987653

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.79  E-value=0.00023  Score=73.16  Aligned_cols=103  Identities=18%  Similarity=0.231  Sum_probs=72.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||..|+-+|..|++.|.+|+++++...         +.          .+.                     
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~---------l~----------~~d---------------------  224 (488)
T 3dgz_A          185 PGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIP---------LR----------GFD---------------------  224 (488)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCS---------ST----------TSC---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCcc---------cc----------cCC---------------------
Confidence            35799999999999999999999999999998631         00          000                     


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeC-CccEEEEEcCeEEe
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTK-AGEELTAYAPLTIV  217 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~-~G~~~~i~a~~vV~  217 (506)
                                            .++.+.+.+.+++. ++.++.++ +.++...+++...+++.+. +|+..++.+|.||.
T Consensus       225 ----------------------~~~~~~l~~~l~~~-gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~  281 (488)
T 3dgz_A          225 ----------------------QQMSSLVTEHMESH-GTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLW  281 (488)
T ss_dssp             ----------------------HHHHHHHHHHHHHT-TCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEE
T ss_pred             ----------------------HHHHHHHHHHHHHC-CCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEE
Confidence                                  01334455556665 78888884 8888875443233555543 36656688999999


Q ss_pred             ecCCcccc
Q 010623          218 CDGCFSNL  225 (506)
Q Consensus       218 AdG~~S~v  225 (506)
                      |.|.....
T Consensus       282 a~G~~p~~  289 (488)
T 3dgz_A          282 AIGRVPET  289 (488)
T ss_dssp             CSCEEESC
T ss_pred             cccCCccc
Confidence            99976544

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.75  E-value=0.0002  Score=75.02  Aligned_cols=98  Identities=19%  Similarity=0.249  Sum_probs=70.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||||.+|+-+|..|++.|.+|+++|+.+.....     +                                    
T Consensus       152 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----~------------------------------------  190 (565)
T 3ntd_A          152 EHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTP-----V------------------------------------  190 (565)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCTT-----S------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccchh-----c------------------------------------
Confidence            48999999999999999999999999999997532110     0                                    


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEee-------------------CCeEEEEEE
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEE-------------------KGTIKGVQY  200 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~-------------------~~~v~~v~v  200 (506)
                                          ...+.+.+.+.+++. ++.++.++ ++++..+                   +++   +.+
T Consensus       191 --------------------~~~~~~~l~~~l~~~-GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~v  246 (565)
T 3ntd_A          191 --------------------DREMAGFAHQAIRDQ-GVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGH---LSL  246 (565)
T ss_dssp             --------------------CHHHHHHHHHHHHHT-TCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCE---EEE
T ss_pred             --------------------CHHHHHHHHHHHHHC-CCEEEeCCeEEEEeccccccccccccccccccccCCCc---EEE
Confidence                                001233445555555 78888774 8888763                   443   444


Q ss_pred             EeCCccEEEEEcCeEEeecCCcccc
Q 010623          201 KTKAGEELTAYAPLTIVCDGCFSNL  225 (506)
Q Consensus       201 ~~~~G~~~~i~a~~vV~AdG~~S~v  225 (506)
                      ...+|+  ++.||.||.|.|.....
T Consensus       247 ~~~~g~--~i~~D~vi~a~G~~p~~  269 (565)
T 3ntd_A          247 TLSNGE--LLETDLLIMAIGVRPET  269 (565)
T ss_dssp             EETTSC--EEEESEEEECSCEEECC
T ss_pred             EEcCCC--EEEcCEEEECcCCccch
Confidence            457776  46799999999987654

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.73  E-value=0.00019  Score=73.36  Aligned_cols=98  Identities=18%  Similarity=0.198  Sum_probs=71.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||+.|+-+|..|++.|.+|+++|+.+..-+      ..                                  
T Consensus       176 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------~~----------------------------------  215 (467)
T 1zk7_A          176 PERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR------ED----------------------------------  215 (467)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT------SC----------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC------CC----------------------------------
Confidence            35799999999999999999999999999999753111      00                                  


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                            ..+.+.+.+.+++. +++++.++ |+++..+++.   +.+..+ +.  ++.+|.||.|
T Consensus       216 ----------------------~~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~---~~v~~~-~~--~i~aD~Vv~a  266 (467)
T 1zk7_A          216 ----------------------PAIGEAVTAAFRAE-GIEVLEHTQASQVAHMDGE---FVLTTT-HG--ELRADKLLVA  266 (467)
T ss_dssp             ----------------------HHHHHHHHHHHHHT-TCEEETTCCEEEEEEETTE---EEEEET-TE--EEEESEEEEC
T ss_pred             ----------------------HHHHHHHHHHHHhC-CCEEEcCCEEEEEEEeCCE---EEEEEC-Cc--EEEcCEEEEC
Confidence                                  02334555566666 78888874 9999877653   233344 33  4779999999


Q ss_pred             cCCcccch
Q 010623          219 DGCFSNLR  226 (506)
Q Consensus       219 dG~~S~vR  226 (506)
                      .|.++...
T Consensus       267 ~G~~p~~~  274 (467)
T 1zk7_A          267 TGRTPNTR  274 (467)
T ss_dssp             SCEEESCT
T ss_pred             CCCCcCCC
Confidence            99987653

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.73  E-value=0.00022  Score=73.12  Aligned_cols=103  Identities=21%  Similarity=0.238  Sum_probs=72.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||..|+-+|..|++.|.+|+++++...         +.          .+.                     
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~---------l~----------~~d---------------------  226 (483)
T 3dgh_A          187 PGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIV---------LR----------GFD---------------------  226 (483)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCS---------ST----------TSC---------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC---------Cc----------ccC---------------------
Confidence            35799999999999999999999999999997521         00          000                     


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeC-CccEEEEEcCeEEe
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTK-AGEELTAYAPLTIV  217 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~-~G~~~~i~a~~vV~  217 (506)
                                            .++.+.+.+.+++. +++++.++ ++++..++++...|++.+. +|+..++.+|.||.
T Consensus       227 ----------------------~~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~  283 (483)
T 3dgh_A          227 ----------------------QQMAELVAASMEER-GIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLW  283 (483)
T ss_dssp             ----------------------HHHHHHHHHHHHHT-TCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEE
T ss_pred             ----------------------HHHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEE
Confidence                                  02334455556665 78888885 8898875543223555543 35556788999999


Q ss_pred             ecCCcccc
Q 010623          218 CDGCFSNL  225 (506)
Q Consensus       218 AdG~~S~v  225 (506)
                      |.|.....
T Consensus       284 a~G~~p~~  291 (483)
T 3dgh_A          284 AIGRKGLV  291 (483)
T ss_dssp             CSCEEECC
T ss_pred             CcccccCc
Confidence            99976543

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.73  E-value=0.00017  Score=74.26  Aligned_cols=100  Identities=11%  Similarity=0.157  Sum_probs=72.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC---CCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEE
Q 010623           60 DADVIVVGAGVAGAALANTLAKD---GRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFK  136 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~---G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  136 (506)
                      .-+|+|||||..|+-+|..|++.   |.+|+|+|+.+.....                  +.                  
T Consensus       191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~------------------~d------------------  234 (495)
T 2wpf_A          191 PRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRG------------------FD------------------  234 (495)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTT------------------SC------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccc------------------cC------------------
Confidence            35899999999999999999999   9999999987532110                  00                  


Q ss_pred             CCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeE
Q 010623          137 DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLT  215 (506)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~v  215 (506)
                                               ..+.+.+.+.+++. +++++.++ |+++..++++.  +.+...+|+  ++.+|.|
T Consensus       235 -------------------------~~~~~~l~~~l~~~-GV~i~~~~~v~~i~~~~~~~--~~v~~~~G~--~i~~D~v  284 (495)
T 2wpf_A          235 -------------------------ETIREEVTKQLTAN-GIEIMTNENPAKVSLNTDGS--KHVTFESGK--TLDVDVV  284 (495)
T ss_dssp             -------------------------HHHHHHHHHHHHHT-TCEEEESCCEEEEEECTTSC--EEEEETTSC--EEEESEE
T ss_pred             -------------------------HHHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCce--EEEEECCCc--EEEcCEE
Confidence                                     01333455556666 78888884 99998765432  334456786  4679999


Q ss_pred             EeecCCcccc
Q 010623          216 IVCDGCFSNL  225 (506)
Q Consensus       216 V~AdG~~S~v  225 (506)
                      |.|.|....+
T Consensus       285 v~a~G~~p~~  294 (495)
T 2wpf_A          285 MMAIGRIPRT  294 (495)
T ss_dssp             EECSCEEECC
T ss_pred             EECCCCcccc
Confidence            9999987654

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=97.72  E-value=0.0003  Score=67.53  Aligned_cols=96  Identities=21%  Similarity=0.189  Sum_probs=70.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||+|+.|+-+|..|++.|.+|+++++.+.....                    +                    
T Consensus       154 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~~--------------------~--------------------  193 (323)
T 3f8d_A          154 NRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKAQ--------------------P--------------------  193 (323)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCSC--------------------H--------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCcC--------------------H--------------------
Confidence            467999999999999999999999999999987532110                    0                    


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEe
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIV  217 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~  217 (506)
                                                 .+.+.+.+..+++++.++ ++++..+ +++.++++.+ .+|+..++.+|.||.
T Consensus       194 ---------------------------~~~~~~~~~~gv~~~~~~~v~~i~~~-~~~~~v~~~~~~~g~~~~~~~D~vv~  245 (323)
T 3f8d_A          194 ---------------------------IYVETVKKKPNVEFVLNSVVKEIKGD-KVVKQVVVENLKTGEIKELNVNGVFI  245 (323)
T ss_dssp             ---------------------------HHHHHHHTCTTEEEECSEEEEEEEES-SSEEEEEEEETTTCCEEEEECSEEEE
T ss_pred             ---------------------------HHHHHHHhCCCcEEEeCCEEEEEecc-CceeEEEEEECCCCceEEEEcCEEEE
Confidence                                       111223333489998885 8888766 4455677665 457766788999999


Q ss_pred             ecCCcc
Q 010623          218 CDGCFS  223 (506)
Q Consensus       218 AdG~~S  223 (506)
                      |.|...
T Consensus       246 a~G~~p  251 (323)
T 3f8d_A          246 EIGFDP  251 (323)
T ss_dssp             CCCEEC
T ss_pred             EECCCC
Confidence            999654

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.71  E-value=0.00015  Score=71.47  Aligned_cols=92  Identities=23%  Similarity=0.346  Sum_probs=67.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||||++|+-+|..|++.|.+|+++|+.+....      +.                                   
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------~~-----------------------------------  182 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG------LD-----------------------------------  182 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT------CC-----------------------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc------CC-----------------------------------
Confidence            5799999999999999999999999999999853211      00                                   


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD  219 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad  219 (506)
                                           ..+.+.+.+.+++. +++++.++ ++++.  .+   +++  .++|+   +.+|.||.|.
T Consensus       183 ---------------------~~~~~~l~~~l~~~-gV~i~~~~~v~~i~--~~---~v~--~~~g~---i~~D~vi~a~  230 (367)
T 1xhc_A          183 ---------------------EELSNMIKDMLEET-GVKFFLNSELLEAN--EE---GVL--TNSGF---IEGKVKICAI  230 (367)
T ss_dssp             ---------------------HHHHHHHHHHHHHT-TEEEECSCCEEEEC--SS---EEE--ETTEE---EECSCEEEEC
T ss_pred             ---------------------HHHHHHHHHHHHHC-CCEEEcCCEEEEEE--ee---EEE--ECCCE---EEcCEEEECc
Confidence                                 01333455555666 89998884 88886  22   233  45674   6799999999


Q ss_pred             CCcccc
Q 010623          220 GCFSNL  225 (506)
Q Consensus       220 G~~S~v  225 (506)
                      |.....
T Consensus       231 G~~p~~  236 (367)
T 1xhc_A          231 GIVPNV  236 (367)
T ss_dssp             CEEECC
T ss_pred             CCCcCH
Confidence            987654

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.71  E-value=0.00013  Score=74.77  Aligned_cols=99  Identities=23%  Similarity=0.337  Sum_probs=70.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG  138 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (506)
                      ..-+|+|||||++|+-+|..|++.|.+|+++|+.+....                  .+                     
T Consensus       185 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------------------~~---------------------  225 (480)
T 3cgb_A          185 KVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGT------------------IY---------------------  225 (480)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTS------------------SS---------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhh------------------cC---------------------
Confidence            346899999999999999999999999999998742110                  00                     


Q ss_pred             ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEe
Q 010623          139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV  217 (506)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~  217 (506)
                                            ...+.+.+.+.+++. +++++.++ |+++..+ +++..+.  .. +.  ++.+|.||.
T Consensus       226 ----------------------~~~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~-~~v~~v~--~~-~~--~i~~D~vi~  276 (480)
T 3cgb_A          226 ----------------------DGDMAEYIYKEADKH-HIEILTNENVKAFKGN-ERVEAVE--TD-KG--TYKADLVLV  276 (480)
T ss_dssp             ----------------------CHHHHHHHHHHHHHT-TCEEECSCCEEEEEES-SBEEEEE--ET-TE--EEECSEEEE
T ss_pred             ----------------------CHHHHHHHHHHHHHc-CcEEEcCCEEEEEEcC-CcEEEEE--EC-CC--EEEcCEEEE
Confidence                                  012344566666666 78888774 8888765 4443333  33 33  477999999


Q ss_pred             ecCCcccc
Q 010623          218 CDGCFSNL  225 (506)
Q Consensus       218 AdG~~S~v  225 (506)
                      |+|.....
T Consensus       277 a~G~~p~~  284 (480)
T 3cgb_A          277 SVGVKPNT  284 (480)
T ss_dssp             CSCEEESC
T ss_pred             CcCCCcCh
Confidence            99987653

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.67  E-value=0.00031  Score=72.19  Aligned_cols=99  Identities=21%  Similarity=0.266  Sum_probs=71.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHH----CCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEE
Q 010623           61 ADVIVVGAGVAGAALANTLAK----DGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFK  136 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~----~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  136 (506)
                      -+|+|||||..|+-+|..|++    .|.+|+++++.+....+.    +                                
T Consensus       181 ~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~----l--------------------------------  224 (493)
T 1m6i_A          181 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKI----L--------------------------------  224 (493)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTT----S--------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCccccccc----C--------------------------------
Confidence            579999999999999999987    478999998874211000    0                                


Q ss_pred             CCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeE
Q 010623          137 DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLT  215 (506)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~v  215 (506)
                                              ...+.+.+.+.+++. +++++.++ |+++..+++.   +.+...+|+  ++.||.|
T Consensus       225 ------------------------~~~~~~~~~~~l~~~-GV~v~~~~~V~~i~~~~~~---~~v~l~dG~--~i~aD~V  274 (493)
T 1m6i_A          225 ------------------------PEYLSNWTMEKVRRE-GVKVMPNAIVQSVGVSSGK---LLIKLKDGR--KVETDHI  274 (493)
T ss_dssp             ------------------------CHHHHHHHHHHHHTT-TCEEECSCCEEEEEEETTE---EEEEETTSC--EEEESEE
T ss_pred             ------------------------CHHHHHHHHHHHHhc-CCEEEeCCEEEEEEecCCe---EEEEECCCC--EEECCEE
Confidence                                    012334555666666 89998884 9999877664   345567886  4679999


Q ss_pred             EeecCCcccc
Q 010623          216 IVCDGCFSNL  225 (506)
Q Consensus       216 V~AdG~~S~v  225 (506)
                      |.|.|.....
T Consensus       275 v~a~G~~pn~  284 (493)
T 1m6i_A          275 VAAVGLEPNV  284 (493)
T ss_dssp             EECCCEEECC
T ss_pred             EECCCCCccH
Confidence            9999987653

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.66  E-value=0.00039  Score=71.19  Aligned_cols=103  Identities=15%  Similarity=0.145  Sum_probs=71.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||..|+-+|..|++.|.+|+++++.+.....                  .                      
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------~----------------------  226 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS------------------F----------------------  226 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT------------------S----------------------
T ss_pred             CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccccc------------------c----------------------
Confidence            358999999999999999999999999999987531100                  0                      


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCC---ccE--EEEEcC
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKA---GEE--LTAYAP  213 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~---G~~--~~i~a~  213 (506)
                                           ...+.+.+.+.+++. +++++.++ ++++..++++.. +.+...+   |+.  .++.+|
T Consensus       227 ---------------------d~~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~-~~v~~~~~~~g~~~g~~~~~D  283 (478)
T 3dk9_A          227 ---------------------DSMISTNCTEELENA-GVEVLKFSQVKEVKKTLSGLE-VSMVTAVPGRLPVMTMIPDVD  283 (478)
T ss_dssp             ---------------------CHHHHHHHHHHHHHT-TCEEETTEEEEEEEECSSSEE-EEEEECCTTSCCEEEEEEEES
T ss_pred             ---------------------CHHHHHHHHHHHHHC-CCEEEeCCEEEEEEEcCCCcE-EEEEEccCCCCcccceEEEcC
Confidence                                 011334455555555 88998885 889887655411 3333332   332  467899


Q ss_pred             eEEeecCCcccc
Q 010623          214 LTIVCDGCFSNL  225 (506)
Q Consensus       214 ~vV~AdG~~S~v  225 (506)
                      .||.|.|.....
T Consensus       284 ~vi~a~G~~p~~  295 (478)
T 3dk9_A          284 CLLWAIGRVPNT  295 (478)
T ss_dssp             EEEECSCEEESC
T ss_pred             EEEEeeccccCC
Confidence            999999976544

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.66  E-value=0.00039  Score=71.98  Aligned_cols=99  Identities=15%  Similarity=0.181  Sum_probs=73.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG  138 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (506)
                      .+-+++|||||..|+-.|..+++.|.+|+|+++...         +.          +..                    
T Consensus       222 lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~---------L~----------~~D--------------------  262 (542)
T 4b1b_A          222 DPGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIV---------LR----------GFD--------------------  262 (542)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCS---------ST----------TSC--------------------
T ss_pred             CCceEEEECCCHHHHHHHHHHHhcCCeEEEeccccc---------cc----------ccc--------------------
Confidence            346899999999999999999999999999987521         00          000                    


Q ss_pred             ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEe
Q 010623          139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV  217 (506)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~  217 (506)
                                             .++...+.+.+++. ++.++.+. +.++...++.   +.+...++++  +.+|.|+.
T Consensus       263 -----------------------~ei~~~l~~~l~~~-gi~~~~~~~v~~~~~~~~~---~~v~~~~~~~--~~~D~vLv  313 (542)
T 4b1b_A          263 -----------------------QQCAVKVKLYMEEQ-GVMFKNGILPKKLTKMDDK---ILVEFSDKTS--ELYDTVLY  313 (542)
T ss_dssp             -----------------------HHHHHHHHHHHHHT-TCEEEETCCEEEEEEETTE---EEEEETTSCE--EEESEEEE
T ss_pred             -----------------------hhHHHHHHHHHHhh-cceeecceEEEEEEecCCe---EEEEEcCCCe--EEEEEEEE
Confidence                                   12344556666666 78888885 8999888884   4455666664  45999999


Q ss_pred             ecCCcccc
Q 010623          218 CDGCFSNL  225 (506)
Q Consensus       218 AdG~~S~v  225 (506)
                      |.|..-++
T Consensus       314 AvGR~Pnt  321 (542)
T 4b1b_A          314 AIGRKGDI  321 (542)
T ss_dssp             CSCEEESC
T ss_pred             cccccCCc
Confidence            99987655

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.64  E-value=3.7e-05  Score=78.69  Aligned_cols=38  Identities=32%  Similarity=0.454  Sum_probs=33.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGR-RVHVIERDLSEP   96 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~~~~   96 (506)
                      .++||+|||||++|+++|+.|++.|+ +|+|+|+++...
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~g   41 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIG   41 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSB
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCC
Confidence            35899999999999999999999999 899999986543

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.61  E-value=0.00058  Score=70.63  Aligned_cols=103  Identities=17%  Similarity=0.173  Sum_probs=69.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||..|+-+|..|++.|.+|+++++...         +.          .+.                     
T Consensus       210 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~---------l~----------~~d---------------------  249 (519)
T 3qfa_A          210 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSIL---------LR----------GFD---------------------  249 (519)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCS---------ST----------TSC---------------------
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecccc---------cc----------cCC---------------------
Confidence            34699999999999999999999999999997521         00          000                     


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCC---eEEEEEEEeCCcc-EEEEEcCe
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKG---TIKGVQYKTKAGE-ELTAYAPL  214 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~---~v~~v~v~~~~G~-~~~i~a~~  214 (506)
                                            .++.+.+.+.+++. +++++.+. ++++...++   +...+++...+|+ +.++.+|.
T Consensus       250 ----------------------~~~~~~~~~~l~~~-GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~  306 (519)
T 3qfa_A          250 ----------------------QDMANKIGEHMEEH-GIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNT  306 (519)
T ss_dssp             ----------------------HHHHHHHHHHHHHT-TCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESE
T ss_pred             ----------------------HHHHHHHHHHHHHC-CCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCE
Confidence                                  01333455555555 78888874 777765321   2223555555663 35678999


Q ss_pred             EEeecCCcccc
Q 010623          215 TIVCDGCFSNL  225 (506)
Q Consensus       215 vV~AdG~~S~v  225 (506)
                      ||.|.|.....
T Consensus       307 vi~a~G~~p~~  317 (519)
T 3qfa_A          307 VMLAIGRDACT  317 (519)
T ss_dssp             EEECSCEEESC
T ss_pred             EEEecCCcccC
Confidence            99999976543

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.61  E-value=0.00066  Score=71.59  Aligned_cols=101  Identities=18%  Similarity=0.247  Sum_probs=68.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||||.+|+-+|..|++.|.+|+++++.. ..         +         ++.+                     
T Consensus       287 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~l---------~---------~~d~---------------------  326 (598)
T 2x8g_A          287 GKTLVIGASYVALECAGFLASLGGDVTVMVRSI-LL---------R---------GFDQ---------------------  326 (598)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-SS---------T---------TSCH---------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEECCc-Cc---------C---------cCCH---------------------
Confidence            479999999999999999999999999999862 10         0         0000                     


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEee------C---CeEEEEEEEeCCccEEEE
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEE------K---GTIKGVQYKTKAGEELTA  210 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~------~---~~v~~v~v~~~~G~~~~i  210 (506)
                                            .+.+.+.+.+++. +++++.+. ++++...      +   +++. +.+...+|++.++
T Consensus       327 ----------------------~~~~~~~~~l~~~-gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~-v~~~~~~g~~~~~  382 (598)
T 2x8g_A          327 ----------------------QMAEKVGDYMENH-GVKFAKLCVPDEIKQLKVVDTENNKPGLLL-VKGHYTDGKKFEE  382 (598)
T ss_dssp             ----------------------HHHHHHHHHHHHT-TCEEEETEEEEEEEEEECCBTTTTBCCEEE-EEEEETTSCEEEE
T ss_pred             ----------------------HHHHHHHHHHHhC-CCEEEECCeEEEEEeccccccccCCCceEE-EEEEeCCCcEEec
Confidence                                  1222334444555 78888774 6776542      2   3332 4444567876667


Q ss_pred             EcCeEEeecCCcccc
Q 010623          211 YAPLTIVCDGCFSNL  225 (506)
Q Consensus       211 ~a~~vV~AdG~~S~v  225 (506)
                      .+|.||.|.|.....
T Consensus       383 ~~D~vi~a~G~~p~~  397 (598)
T 2x8g_A          383 EFETVIFAVGREPQL  397 (598)
T ss_dssp             EESEEEECSCEEECG
T ss_pred             cCCEEEEEeCCcccc
Confidence            799999999977544

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.58  E-value=4.3e-05  Score=79.76  Aligned_cols=59  Identities=20%  Similarity=0.336  Sum_probs=44.0

Q ss_pred             HHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeC-CccE--EEE-EcCeEEeecCCccc
Q 010623          166 QRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTK-AGEE--LTA-YAPLTIVCDGCFSN  224 (506)
Q Consensus       166 ~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~-~G~~--~~i-~a~~vV~AdG~~S~  224 (506)
                      ..+.+.+.+.++++++.++ |+++..+++++++|++... +|+.  .++ .++.||.|.|+...
T Consensus       199 ~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~gV~~~~~~~g~~~~~~v~~~~~VIlaaG~~~s  262 (546)
T 1kdg_A          199 ATYLQTALARPNFTFKTNVMVSNVVRNGSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGT  262 (546)
T ss_dssp             HTHHHHHHTCTTEEEECSCCEEEEEEETTEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHH
T ss_pred             HHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEecCCCceeEEEEEeCCEEEEcCChhcC
Confidence            3455666666689999885 9999988888999987653 4642  223 68999999999653

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.58  E-value=5.2e-05  Score=81.90  Aligned_cols=36  Identities=31%  Similarity=0.502  Sum_probs=33.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      ...||+||||||+|+++|..|+++|++|+|+|+.+.
T Consensus       388 ~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~  423 (729)
T 1o94_A          388 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK  423 (729)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            468999999999999999999999999999999864

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.56  E-value=0.00043  Score=70.63  Aligned_cols=102  Identities=21%  Similarity=0.293  Sum_probs=69.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||+.|+-+|..|++.|.+|+++|+.+......    +             .                     
T Consensus       172 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~----~-------------d---------------------  213 (466)
T 3l8k_A          172 PQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITL----E-------------D---------------------  213 (466)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTS----C-------------C---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCC----C-------------C---------------------
Confidence            4579999999999999999999999999999975321100    0             0                     


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeC-CeEEEEEEEeCCccEEEEEcCeEEe
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEK-GTIKGVQYKTKAGEELTAYAPLTIV  217 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~-~~v~~v~v~~~~G~~~~i~a~~vV~  217 (506)
                                            ..+.+.+.+.+.    +.++.+ +++++..++ +++. +++.+.+|+..++.+|.||.
T Consensus       214 ----------------------~~~~~~l~~~l~----v~i~~~~~v~~i~~~~~~~v~-v~~~~~~G~~~~i~~D~vi~  266 (466)
T 3l8k_A          214 ----------------------QDIVNTLLSILK----LNIKFNSPVTEVKKIKDDEYE-VIYSTKDGSKKSIFTNSVVL  266 (466)
T ss_dssp             ----------------------HHHHHHHHHHHC----CCEECSCCEEEEEEEETTEEE-EEECCTTSCCEEEEESCEEE
T ss_pred             ----------------------HHHHHHHHhcCE----EEEEECCEEEEEEEcCCCcEE-EEEEecCCceEEEEcCEEEE
Confidence                                  012223333332    667766 488888766 6433 33322267656688999999


Q ss_pred             ecCCcccch
Q 010623          218 CDGCFSNLR  226 (506)
Q Consensus       218 AdG~~S~vR  226 (506)
                      |.|.....-
T Consensus       267 a~G~~p~~~  275 (466)
T 3l8k_A          267 AAGRRPVIP  275 (466)
T ss_dssp             CCCEEECCC
T ss_pred             CcCCCcccc
Confidence            999876553

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=97.54  E-value=0.00025  Score=68.91  Aligned_cols=96  Identities=21%  Similarity=0.275  Sum_probs=66.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||+|.+|+-+|..|++.|.+|+++++.+....                    .+                    
T Consensus       155 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~--------------------~~--------------------  194 (335)
T 2a87_A          155 DQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRA--------------------SK--------------------  194 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSS--------------------CT--------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCc--------------------cH--------------------
Confidence            45899999999999999999999999999998753100                    00                    


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEe
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIV  217 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~  217 (506)
                                             .+.+.   ..++. +++++.++ ++++..++ ++.++++.+ .+|+..++.+|.||.
T Consensus       195 -----------------------~~~~~---~~~~~-gV~v~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~vi~  246 (335)
T 2a87_A          195 -----------------------IMLDR---ARNND-KIRFLTNHTVVAVDGDT-TVTGLRVRDTNTGAETTLPVTGVFV  246 (335)
T ss_dssp             -----------------------THHHH---HHHCT-TEEEECSEEEEEEECSS-SCCEEEEEEETTSCCEEECCSCEEE
T ss_pred             -----------------------HHHHH---HhccC-CcEEEeCceeEEEecCC-cEeEEEEEEcCCCceEEeecCEEEE
Confidence                                   01111   11233 89998875 88887654 334466654 356545688999999


Q ss_pred             ecCCcc
Q 010623          218 CDGCFS  223 (506)
Q Consensus       218 AdG~~S  223 (506)
                      |.|...
T Consensus       247 a~G~~p  252 (335)
T 2a87_A          247 AIGHEP  252 (335)
T ss_dssp             CSCEEE
T ss_pred             ccCCcc
Confidence            999643

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.51  E-value=8e-05  Score=79.72  Aligned_cols=36  Identities=33%  Similarity=0.458  Sum_probs=33.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      ..+||+|||||++|+++|..|++.|++|+|+|+.+.
T Consensus       372 ~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~  407 (671)
T 1ps9_A          372 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE  407 (671)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            458999999999999999999999999999999864

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.50  E-value=7.8e-05  Score=79.59  Aligned_cols=38  Identities=32%  Similarity=0.406  Sum_probs=34.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP   96 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~   96 (506)
                      ...||+|||||++||++|+.|++.|++|+|+|+.+...
T Consensus       106 ~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~g  143 (662)
T 2z3y_A          106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVG  143 (662)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSB
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            45899999999999999999999999999999986543

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=97.50  E-value=0.0009  Score=65.68  Aligned_cols=105  Identities=17%  Similarity=0.213  Sum_probs=67.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||||.+|+-+|..|++.|.+|+++++.+....        +.       ...     ..                
T Consensus       167 ~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~--------~~-------~d~-----~~----------------  210 (369)
T 3d1c_A          167 GQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLND--------PD-------ADP-----SV----------------  210 (369)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECC-------------------------C-----TT----------------
T ss_pred             CEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCC--------CC-------CCC-----Cc----------------
Confidence            4799999999999999999999999999998753110        00       000     00                


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD  219 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad  219 (506)
                         .               -...+.+.+.+.+++.++++++.++ ++++..+++.   +.+...+|++. ..+|.||.|+
T Consensus       211 ---~---------------~~~~~~~~l~~~l~~~g~v~~~~~~~v~~i~~~~~~---~~v~~~~g~~~-~~~d~vi~a~  268 (369)
T 3d1c_A          211 ---R---------------LSPYTRQRLGNVIKQGARIEMNVHYTVKDIDFNNGQ---YHISFDSGQSV-HTPHEPILAT  268 (369)
T ss_dssp             ---S---------------CCHHHHHHHHHHHHTTCCEEEECSCCEEEEEEETTE---EEEEESSSCCE-EESSCCEECC
T ss_pred             ---c---------------CCHHHHHHHHHHHhhCCcEEEecCcEEEEEEecCCc---eEEEecCCeEe-ccCCceEEee
Confidence               0               0112334555555665239998884 8888766663   34456778643 3469999999


Q ss_pred             CCcc
Q 010623          220 GCFS  223 (506)
Q Consensus       220 G~~S  223 (506)
                      |...
T Consensus       269 G~~~  272 (369)
T 3d1c_A          269 GFDA  272 (369)
T ss_dssp             CBCG
T ss_pred             ccCC
Confidence            9754

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=97.49  E-value=9.1e-05  Score=80.66  Aligned_cols=38  Identities=32%  Similarity=0.406  Sum_probs=34.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP   96 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~   96 (506)
                      ...+|+|||||++||++|+.|+++|++|+|+|+.+...
T Consensus       277 ~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~G  314 (852)
T 2xag_A          277 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVG  314 (852)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCC
Confidence            45799999999999999999999999999999986543

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.46  E-value=0.00052  Score=72.22  Aligned_cols=97  Identities=20%  Similarity=0.270  Sum_probs=70.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||.+|+-+|..|++.|.+|+++|+.+.....     +                                   
T Consensus       187 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----~-----------------------------------  226 (588)
T 3ics_A          187 PRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP-----I-----------------------------------  226 (588)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-----S-----------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc-----C-----------------------------------
Confidence            357999999999999999999999999999987532110     0                                   


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                           ...+.+.+.+.+++. +++++.++ |+++..+++.   |+  ..+|+  ++.+|.||.|
T Consensus       227 ---------------------~~~~~~~l~~~l~~~-GV~i~~~~~v~~i~~~~~~---v~--~~~g~--~i~~D~Vi~a  277 (588)
T 3ics_A          227 ---------------------DYEMAAYVHEHMKNH-DVELVFEDGVDALEENGAV---VR--LKSGS--VIQTDMLILA  277 (588)
T ss_dssp             ---------------------CHHHHHHHHHHHHHT-TCEEECSCCEEEEEGGGTE---EE--ETTSC--EEECSEEEEC
T ss_pred             ---------------------CHHHHHHHHHHHHHc-CCEEEECCeEEEEecCCCE---EE--ECCCC--EEEcCEEEEc
Confidence                                 012334555556665 78888874 9998766552   33  46776  4679999999


Q ss_pred             cCCcccc
Q 010623          219 DGCFSNL  225 (506)
Q Consensus       219 dG~~S~v  225 (506)
                      .|.....
T Consensus       278 ~G~~p~~  284 (588)
T 3ics_A          278 IGVQPES  284 (588)
T ss_dssp             SCEEECC
T ss_pred             cCCCCCh
Confidence            9987654

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.44  E-value=7.1e-05  Score=76.13  Aligned_cols=35  Identities=23%  Similarity=0.228  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH-C------CCcEEEEecCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAK-D------GRRVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~-~------G~~v~vvE~~~~   94 (506)
                      .+||+||||||+|+++|..|++ .      |++|+|+|+.+.
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~   44 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   44 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCC
Confidence            4799999999999999999999 7      999999999864

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.42  E-value=4.4e-05  Score=79.40  Aligned_cols=49  Identities=24%  Similarity=0.323  Sum_probs=38.8

Q ss_pred             CCCEEEEece-EEEEEeeCC---eEEEEEEEeCCccEEEE---EcCeEEeecCCcc
Q 010623          175 LPNVRLEQGT-VTSLLEEKG---TIKGVQYKTKAGEELTA---YAPLTIVCDGCFS  223 (506)
Q Consensus       175 ~~~v~i~~~~-v~~~~~~~~---~v~~v~v~~~~G~~~~i---~a~~vV~AdG~~S  223 (506)
                      .++++++.++ |+++..+++   ++++|++.+.+|+..++   .++.||.|.|+..
T Consensus       206 ~~~~~v~~~~~v~~i~~~~~~~~~~~GV~~~~~~g~~~~~~v~a~k~VILaaGa~~  261 (536)
T 1ju2_A          206 SNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIG  261 (536)
T ss_dssp             TTTEEEEESCEEEEEEECCSSSCBEEEEEEECTTSCEEEEEEEEEEEEEECCHHHH
T ss_pred             CCCcEEEeCCEEEEEEECCCCCCEEEEEEEEeCCCceEEEEeccCCEEEEcCcccC
Confidence            4589998885 999987753   78899987767876666   5789999999873

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.40  E-value=0.0013  Score=66.89  Aligned_cols=34  Identities=18%  Similarity=0.276  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHH--------------------HCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLA--------------------KDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La--------------------~~G~-~v~vvE~~~   93 (506)
                      .-+|+|||||.+|+-+|..|+                    +.|. +|+|++|++
T Consensus       145 ~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~  199 (460)
T 1cjc_A          145 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG  199 (460)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCC
Confidence            458999999999999999999                    6788 799999985

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=97.34  E-value=0.0007  Score=65.27  Aligned_cols=95  Identities=20%  Similarity=0.144  Sum_probs=67.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||+|..|+-+|..|++.|.+|+++++.+....                   ..+                    
T Consensus       154 ~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~-------------------~~~--------------------  194 (332)
T 3lzw_A          154 GRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRA-------------------HEH--------------------  194 (332)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSS-------------------CHH--------------------
T ss_pred             CCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCc-------------------cHH--------------------
Confidence            35799999999999999999999999999998753100                   000                    


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEe
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIV  217 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~  217 (506)
                                              .    .+.+.+. ++.++.++ +.++..+++ +.++++.+ .+|+..++.+|.||.
T Consensus       195 ------------------------~----~~~l~~~-gv~~~~~~~v~~i~~~~~-~~~v~~~~~~~g~~~~~~~D~vv~  244 (332)
T 3lzw_A          195 ------------------------S----VENLHAS-KVNVLTPFVPAELIGEDK-IEQLVLEEVKGDRKEILEIDDLIV  244 (332)
T ss_dssp             ------------------------H----HHHHHHS-SCEEETTEEEEEEECSSS-CCEEEEEETTSCCEEEEECSEEEE
T ss_pred             ------------------------H----HHHHhcC-CeEEEeCceeeEEecCCc-eEEEEEEecCCCceEEEECCEEEE
Confidence                                    0    0112333 78888874 888877655 44577665 455556788999999


Q ss_pred             ecCCcc
Q 010623          218 CDGCFS  223 (506)
Q Consensus       218 AdG~~S  223 (506)
                      |.|...
T Consensus       245 a~G~~p  250 (332)
T 3lzw_A          245 NYGFVS  250 (332)
T ss_dssp             CCCEEC
T ss_pred             eeccCC
Confidence            999643

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.32  E-value=0.0011  Score=68.90  Aligned_cols=35  Identities=26%  Similarity=0.382  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      .-+|+|||+|.+|+-+|..|++.|.+|++++|.+.
T Consensus       178 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          178 GRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             cceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            45899999999999999999999999999999875

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.32  E-value=0.00014  Score=74.02  Aligned_cols=35  Identities=34%  Similarity=0.476  Sum_probs=32.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDG--RRVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G--~~v~vvE~~~~   94 (506)
                      .+||+||||||+|+.+|..|++.|  ++|+|+|+.+.
T Consensus         6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~   42 (460)
T 1cjc_A            6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   42 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCc
Confidence            479999999999999999999998  99999999864

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.32  E-value=0.00016  Score=80.92  Aligned_cols=35  Identities=29%  Similarity=0.428  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~~   94 (506)
                      .+||+||||||+|+++|..|++.|+ +|+|+|+.+.
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~  222 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEY  222 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCC
Confidence            5799999999999999999999999 7999999754

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=97.28  E-value=0.0016  Score=62.17  Aligned_cols=34  Identities=32%  Similarity=0.406  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .-+|+|||||..|+-+|..|++.|.+|+|+|+.+
T Consensus       152 ~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~  185 (314)
T 4a5l_A          152 NKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRD  185 (314)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHhCCeeeeecccc
Confidence            3579999999999999999999999999999864

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.25  E-value=0.0013  Score=66.69  Aligned_cols=96  Identities=24%  Similarity=0.340  Sum_probs=66.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||||..|+-+|..|++.|.+|+++|+.+......                                         
T Consensus       149 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------------------------------  187 (449)
T 3kd9_A          149 ENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRS-----------------------------------------  187 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT-----------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhh-----------------------------------------
Confidence            489999999999999999999999999999975311100                                         


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD  219 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad  219 (506)
                                         ....+.+.+.+.+++.  ++++.++ +.++..++ ++..+   ..+|+  ++.+|.||.|.
T Consensus       188 -------------------~~~~~~~~l~~~l~~~--v~i~~~~~v~~i~~~~-~v~~v---~~~g~--~i~~D~Vv~a~  240 (449)
T 3kd9_A          188 -------------------FDKEVTDILEEKLKKH--VNLRLQEITMKIEGEE-RVEKV---VTDAG--EYKAELVILAT  240 (449)
T ss_dssp             -------------------SCHHHHHHHHHHHTTT--SEEEESCCEEEEECSS-SCCEE---EETTE--EEECSEEEECS
T ss_pred             -------------------cCHHHHHHHHHHHHhC--cEEEeCCeEEEEeccC-cEEEE---EeCCC--EEECCEEEEee
Confidence                               0012444555666554  7777775 88887554 33222   23454  46799999999


Q ss_pred             CCccc
Q 010623          220 GCFSN  224 (506)
Q Consensus       220 G~~S~  224 (506)
                      |....
T Consensus       241 G~~p~  245 (449)
T 3kd9_A          241 GIKPN  245 (449)
T ss_dssp             CEEEC
T ss_pred             CCccC
Confidence            98754

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.25  E-value=0.0011  Score=67.17  Aligned_cols=59  Identities=15%  Similarity=0.088  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHcC-----CCEEEEece-EEEEEeeCCeEEEEEEEe--------------CCccEEEEEcCeEEeecCCcc
Q 010623          164 FVQRLREKAASL-----PNVRLEQGT-VTSLLEEKGTIKGVQYKT--------------KAGEELTAYAPLTIVCDGCFS  223 (506)
Q Consensus       164 l~~~L~~~~~~~-----~~v~i~~~~-v~~~~~~~~~v~~v~v~~--------------~~G~~~~i~a~~vV~AdG~~S  223 (506)
                      +.+.|.+.+.+.     .++.+++++ ++++..+ +++.++++..              .+|+..++.||.||.|.|..+
T Consensus       248 ~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~-~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p  326 (456)
T 1lqt_A          248 NIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGK-RKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRG  326 (456)
T ss_dssp             HHHHHHHHHTCC-CTTSEEEEEECSEEEEEEECS-SSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCEEC
T ss_pred             HHHHHHHHhhcCCCCCCceEEEEeCCCCeEEecC-CcEeEEEEEEEEecCCCcccccccCCCceEEEEcCEEEEcccccc
Confidence            345566656551     378898885 8888755 4444555542              246555788999999999654

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.22  E-value=0.00021  Score=73.71  Aligned_cols=58  Identities=16%  Similarity=0.161  Sum_probs=44.5

Q ss_pred             HHHHHHHcCCCEEEEece-EEEEEeeC-C-eEEEEEEEeCCc---cEEEEEcCeEEeecCCccc
Q 010623          167 RLREKAASLPNVRLEQGT-VTSLLEEK-G-TIKGVQYKTKAG---EELTAYAPLTIVCDGCFSN  224 (506)
Q Consensus       167 ~L~~~~~~~~~v~i~~~~-v~~~~~~~-~-~v~~v~v~~~~G---~~~~i~a~~vV~AdG~~S~  224 (506)
                      .+.+.+.+.++++++.++ |+++..++ + ++++|++.+.+|   +..+++|+.||.|.|+...
T Consensus       226 ~~l~~a~~~~n~~i~~~~~V~~i~~~~~g~~~~gV~~~~~~g~~~~~~~v~A~~VIlaaG~~~s  289 (504)
T 1n4w_A          226 TYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGS  289 (504)
T ss_dssp             THHHHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECSHHHHH
T ss_pred             HHHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCccceeEEEeeCEEEEccCCCCC
Confidence            344555666789999885 99998874 3 788898876666   5567899999999999853

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.22  E-value=0.00025  Score=73.10  Aligned_cols=59  Identities=12%  Similarity=0.091  Sum_probs=44.7

Q ss_pred             HHHHHHHHcCCCEEEEece-EEEEEeeC-C-eEEEEEEEeCCc---cEEEEEcCeEEeecCCccc
Q 010623          166 QRLREKAASLPNVRLEQGT-VTSLLEEK-G-TIKGVQYKTKAG---EELTAYAPLTIVCDGCFSN  224 (506)
Q Consensus       166 ~~L~~~~~~~~~v~i~~~~-v~~~~~~~-~-~v~~v~v~~~~G---~~~~i~a~~vV~AdG~~S~  224 (506)
                      ..+...+.+.++++++.++ |+++..++ + ++++|++...+|   ++.+++|+.||.|.|+...
T Consensus       230 ~~~l~~a~~~~n~~i~~~~~v~~i~~~~~g~~~~gV~~~~~~g~~~~~~~~~A~~VIlaaGa~~s  294 (507)
T 1coy_A          230 KTYLAQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGT  294 (507)
T ss_dssp             TTHHHHHHHTTCEEEECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHH
T ss_pred             HHHHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCcccccEEEEeCEEEEccCccCC
Confidence            3444555566789999885 99998875 4 688898876566   3567899999999999843

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.18  E-value=0.0012  Score=66.56  Aligned_cols=34  Identities=29%  Similarity=0.414  Sum_probs=31.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      -+|+|||||+.|+-+|..+++.|.+|+|+|+.+.
T Consensus       148 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  181 (437)
T 4eqs_A          148 DKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDK  181 (437)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSC
T ss_pred             cEEEEECCccchhhhHHHHHhcCCcceeeeeecc
Confidence            4799999999999999999999999999998753

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=97.15  E-value=0.00019  Score=76.09  Aligned_cols=36  Identities=28%  Similarity=0.361  Sum_probs=33.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC--------CcEEEEecCC-CC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDG--------RRVHVIERDL-SE   95 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G--------~~v~vvE~~~-~~   95 (506)
                      ..+|+|||||++||++|+.|++.|        ++|+|+|+++ ..
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            478999999999999999999999        9999999987 54

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.10  E-value=0.0018  Score=66.56  Aligned_cols=97  Identities=19%  Similarity=0.223  Sum_probs=64.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhccc
Q 010623           61 ADVIVVGAGVAGAALANTLAKDG--------------RRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDA  126 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G--------------~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~  126 (506)
                      ..++|||||++|+-+|..|++.+              .+|+|+|..+...+.     +                      
T Consensus       218 ~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~~-----~----------------------  270 (502)
T 4g6h_A          218 LSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNM-----F----------------------  270 (502)
T ss_dssp             TEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSSTT-----S----------------------
T ss_pred             cceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccccC-----C----------------------
Confidence            46999999999999999987543              568888876531100     0                      


Q ss_pred             ceecceEEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCc
Q 010623          127 QRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAG  205 (506)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G  205 (506)
                                                        ...+.+.+.+.+++. ||+++.++ |++++.+  .+. +.....||
T Consensus       271 ----------------------------------~~~~~~~~~~~L~~~-GV~v~~~~~v~~v~~~--~~~-~~~~~~dg  312 (502)
T 4g6h_A          271 ----------------------------------EKKLSSYAQSHLENT-SIKVHLRTAVAKVEEK--QLL-AKTKHEDG  312 (502)
T ss_dssp             ----------------------------------CHHHHHHHHHHHHHT-TCEEETTEEEEEECSS--EEE-EEEECTTS
T ss_pred             ----------------------------------CHHHHHHHHHHHHhc-ceeeecCceEEEEeCC--ceE-EEEEecCc
Confidence                                              112444555666666 89998885 8887533  222 34445666


Q ss_pred             c--EEEEEcCeEEeecCCc
Q 010623          206 E--ELTAYAPLTIVCDGCF  222 (506)
Q Consensus       206 ~--~~~i~a~~vV~AdG~~  222 (506)
                      +  ..++.||.||.|.|..
T Consensus       313 ~~~~~~i~ad~viwa~Gv~  331 (502)
T 4g6h_A          313 KITEETIPYGTLIWATGNK  331 (502)
T ss_dssp             CEEEEEEECSEEEECCCEE
T ss_pred             ccceeeeccCEEEEccCCc
Confidence            4  2468899999999954

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=97.00  E-value=0.0017  Score=67.37  Aligned_cols=35  Identities=23%  Similarity=0.395  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      .-+|+|||+|.+|+-+|..|++.|.+|+|++|.+.
T Consensus       185 ~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~  219 (545)
T 3uox_A          185 GKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPN  219 (545)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred             CCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence            35799999999999999999999999999999874

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=96.98  E-value=0.0011  Score=69.48  Aligned_cols=41  Identities=29%  Similarity=0.468  Sum_probs=36.5

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 010623           57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD   97 (506)
Q Consensus        57 ~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~   97 (506)
                      ++++|||+|||+|..|..+|..|++.|.+|+++||++....
T Consensus         5 ~~~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg   45 (650)
T 1vg0_A            5 LPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGG   45 (650)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred             CCCcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccC
Confidence            45579999999999999999999999999999999975433

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=96.95  E-value=0.0015  Score=72.72  Aligned_cols=94  Identities=20%  Similarity=0.220  Sum_probs=69.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||+|+.|+-+|..|++.|.+|+|+|+.+...         +       .                          
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~---------~-------~--------------------------  322 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAATGGVVAVIDARSSIS---------A-------A--------------------------  322 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCC---------H-------H--------------------------
T ss_pred             CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccc---------h-------h--------------------------
Confidence            579999999999999999999999999999975321         0       0                          


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEee-CCeEEEEEEEe--C---CccEEEEEcC
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEE-KGTIKGVQYKT--K---AGEELTAYAP  213 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~-~~~v~~v~v~~--~---~G~~~~i~a~  213 (506)
                                                  .+.+++. ++.++.++ ++++..+ ++++.+|++.+  .   +|+..++.+|
T Consensus       323 ----------------------------~~~l~~~-GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D  373 (965)
T 2gag_A          323 ----------------------------AAQAVAD-GVQVISGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEAD  373 (965)
T ss_dssp             ----------------------------HHHHHHT-TCCEEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECS
T ss_pred             ----------------------------HHHHHhC-CeEEEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcC
Confidence                                        0122333 78888885 8888764 56666777765  2   3544578899


Q ss_pred             eEEeecCCcccc
Q 010623          214 LTIVCDGCFSNL  225 (506)
Q Consensus       214 ~vV~AdG~~S~v  225 (506)
                      .||.|.|....+
T Consensus       374 ~Vv~a~G~~P~~  385 (965)
T 2gag_A          374 VLAVAGGFNPVV  385 (965)
T ss_dssp             EEEEECCEEECC
T ss_pred             EEEECCCcCcCh
Confidence            999999976543

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=96.95  E-value=0.0012  Score=62.37  Aligned_cols=33  Identities=15%  Similarity=0.145  Sum_probs=30.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .-+|+|||+|++|+-+|..|++.| +|+++++.+
T Consensus       141 ~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~  173 (297)
T 3fbs_A          141 QGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGI  173 (297)
T ss_dssp             TCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTT
T ss_pred             CCEEEEEecCccHHHHHHHhhhcC-cEEEEECCC
Confidence            458999999999999999999999 999998764

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=96.91  E-value=0.012  Score=56.16  Aligned_cols=34  Identities=21%  Similarity=0.331  Sum_probs=31.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      -+|+|||||+.|+-+|..|++.|.+|+|+|+.+.
T Consensus       146 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  179 (312)
T 4gcm_A          146 KRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDE  179 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEecccc
Confidence            4799999999999999999999999999998753

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=96.83  E-value=0.0054  Score=68.69  Aligned_cols=33  Identities=33%  Similarity=0.403  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      -+|+|||||.+|+-+|..|++.|. +|+|+++.+
T Consensus       333 ~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          333 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG  366 (1025)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CcEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence            389999999999999999999997 899999874

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=96.80  E-value=0.002  Score=65.29  Aligned_cols=35  Identities=23%  Similarity=0.342  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~~   94 (506)
                      .-+|+|||||.+|+-+|..+.+.|. +|+++++++.
T Consensus       264 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~  299 (456)
T 2vdc_G          264 GKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDR  299 (456)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCS
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCc
Confidence            3579999999999999999999998 5999998753

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=96.76  E-value=0.0014  Score=68.13  Aligned_cols=35  Identities=23%  Similarity=0.404  Sum_probs=32.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      .-+|+|||+|.+|+-+|..|++.|.+|++++|.+.
T Consensus       191 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  225 (549)
T 4ap3_A          191 GKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN  225 (549)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            45899999999999999999999999999999874

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=96.72  E-value=0.0041  Score=62.89  Aligned_cols=34  Identities=18%  Similarity=0.183  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCc-EEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRR-VHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~-v~vvE~~~   93 (506)
                      .-+|+|||||.+|+-+|..|++.|.+ |+++++.+
T Consensus       212 ~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~  246 (447)
T 2gv8_A          212 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG  246 (447)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             CCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCC
Confidence            35799999999999999999999999 99999975

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=96.54  E-value=0.0089  Score=60.72  Aligned_cols=35  Identities=17%  Similarity=0.249  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      .-+|+|||||.+|+-+|..|++.|.+|+++++.+.
T Consensus       197 ~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~  231 (464)
T 2xve_A          197 DKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTA  231 (464)
T ss_dssp             TSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCC
Confidence            35799999999999999999999999999998753

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=96.50  E-value=0.0023  Score=63.42  Aligned_cols=36  Identities=17%  Similarity=0.259  Sum_probs=33.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP   96 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~   96 (506)
                      -+|+|||||..|+-+|..|++.|.+|+|+|+.+...
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l  182 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPL  182 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccc
Confidence            479999999999999999999999999999987543

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.33  E-value=0.005  Score=51.30  Aligned_cols=34  Identities=26%  Similarity=0.342  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +-+|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            4689999999999999999999999999999985

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=96.27  E-value=0.012  Score=62.65  Aligned_cols=51  Identities=16%  Similarity=0.167  Sum_probs=34.9

Q ss_pred             HHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcc
Q 010623          166 QRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFS  223 (506)
Q Consensus       166 ~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S  223 (506)
                      ..+.+.+++. +++++.++ ++++..  ++   +++. .+|+..++.+|.||.|.|...
T Consensus       577 ~~~~~~l~~~-GV~v~~~~~v~~i~~--~~---v~~~-~~G~~~~i~~D~Vi~a~G~~p  628 (671)
T 1ps9_A          577 WIHRTTLLSR-GVKMIPGVSYQKIDD--DG---LHVV-INGETQVLAVDNVVICAGQEP  628 (671)
T ss_dssp             HHHHHHHHHT-TCEEECSCEEEEEET--TE---EEEE-ETTEEEEECCSEEEECCCEEE
T ss_pred             HHHHHHHHhc-CCEEEeCcEEEEEeC--Ce---EEEe-cCCeEEEEeCCEEEECCCccc
Confidence            3445555565 88998885 888763  32   4443 567656788999999999654

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.21  E-value=0.0047  Score=52.41  Aligned_cols=35  Identities=23%  Similarity=0.474  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      ...|+|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            46899999999999999999999999999998753

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.90  E-value=0.011  Score=49.96  Aligned_cols=34  Identities=24%  Similarity=0.281  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +-.|+|+|+|..|...|..|.+.|++|+++|+++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            3579999999999999999999999999999974

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.86  E-value=0.0089  Score=49.35  Aligned_cols=33  Identities=30%  Similarity=0.551  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .+|+|+|+|..|..+|..|++.|++|+++|+++
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            579999999999999999999999999999864

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=95.85  E-value=0.019  Score=61.72  Aligned_cols=34  Identities=21%  Similarity=0.335  Sum_probs=31.3

Q ss_pred             CCcEEEEC--CCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVG--AGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVG--gG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .-+|+|||  ||.+|+-+|..|++.|.+|+|+++.+
T Consensus       528 gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~  563 (729)
T 1o94_A          528 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH  563 (729)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence            34899998  99999999999999999999999874

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=95.72  E-value=0.011  Score=49.00  Aligned_cols=33  Identities=27%  Similarity=0.558  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            479999999999999999999999999999874

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=95.42  E-value=0.015  Score=46.23  Aligned_cols=33  Identities=36%  Similarity=0.507  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC-CcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDG-RRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G-~~v~vvE~~~   93 (506)
                      ..|+|+|+|..|..++..|.+.| ++|+++++++
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            57999999999999999999999 8999999874

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=95.37  E-value=0.099  Score=52.42  Aligned_cols=52  Identities=13%  Similarity=0.118  Sum_probs=32.3

Q ss_pred             HHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCcc---EEEEEcCeEEeecCCc
Q 010623          167 RLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGE---ELTAYAPLTIVCDGCF  222 (506)
Q Consensus       167 ~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~---~~~i~a~~vV~AdG~~  222 (506)
                      .+.+.+++. +++++.++ +++++.  +++. +...+.+|+   ..++.+|++|.|.|..
T Consensus       213 ~~~~~l~~~-gI~~~~~~~v~~v~~--~~v~-~~~~~~~g~~~~~~~i~~D~vv~~~g~~  268 (437)
T 3sx6_A          213 ILTKGLKEE-GIEAYTNCKVTKVED--NKMY-VTQVDEKGETIKEMVLPVKFGMMIPAFK  268 (437)
T ss_dssp             HHHHHHHHT-TCEEECSEEEEEEET--TEEE-EEEECTTSCEEEEEEEECSEEEEECCEE
T ss_pred             HHHHHHHHC-CCEEEcCCEEEEEEC--CeEE-EEecccCCccccceEEEEeEEEEcCCCc
Confidence            444555555 88888875 888753  3322 222234543   3468899999998843

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=95.17  E-value=0.023  Score=54.92  Aligned_cols=33  Identities=18%  Similarity=0.321  Sum_probs=30.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .-+|+|||||.+|+-+|..|++.| +|+++++.+
T Consensus       163 ~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~  195 (357)
T 4a9w_A          163 GMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHE  195 (357)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSC
T ss_pred             CCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCC
Confidence            468999999999999999999999 799999874

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.03  E-value=0.026  Score=49.16  Aligned_cols=34  Identities=26%  Similarity=0.358  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC-CCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKD-GRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~-G~~v~vvE~~~   93 (506)
                      ...|+|+|+|..|..+|..|.+. |++|+++|+++
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            45799999999999999999999 99999999874

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=94.96  E-value=0.023  Score=47.00  Aligned_cols=33  Identities=21%  Similarity=0.412  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      -.|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus         7 ~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            369999999999999999999999999999864

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=94.94  E-value=0.057  Score=54.18  Aligned_cols=34  Identities=24%  Similarity=0.436  Sum_probs=31.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      ..|.|||+|..|...|..|++.|++|+++|++++
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            5799999999999999999999999999999854

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=94.86  E-value=0.047  Score=51.77  Aligned_cols=33  Identities=3%  Similarity=0.038  Sum_probs=26.5

Q ss_pred             CcEEEECCCH-HHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGV-AGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~-aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      -+++|||||. +++.+|..+++.|.+|+++++.+
T Consensus       147 ~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~  180 (304)
T 4fk1_A          147 QPLIIISENEDHTLHMTKLVYNWSTDLVIATNGN  180 (304)
T ss_dssp             SCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSC
T ss_pred             CceeeecCCCchhhhHHHHHHhCCceEEEEeccc
Confidence            4688888885 56788888988999999997753

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=94.72  E-value=0.021  Score=51.37  Aligned_cols=32  Identities=25%  Similarity=0.391  Sum_probs=30.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            69999999999999999999999999999875

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=94.30  E-value=0.048  Score=56.45  Aligned_cols=35  Identities=26%  Similarity=0.440  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      .-+|+|||+|.+|+-.|..|++.|.+|++++|.+.
T Consensus       186 gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~  220 (542)
T 1w4x_A          186 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH  220 (542)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCc
Confidence            35799999999999999999999999999999764

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=94.28  E-value=0.04  Score=52.87  Aligned_cols=32  Identities=34%  Similarity=0.631  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      .+|.|||+|..|.+.|..|++.|.+|++++|+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~   34 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRS   34 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            58999999999999999999999999999986

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=94.15  E-value=0.045  Score=52.42  Aligned_cols=35  Identities=23%  Similarity=0.344  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      +...|.|||+|..|.+.|..|++.|+ +|+++|+++
T Consensus         3 ~~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            3 ERRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            34689999999999999999999998 999999874

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=94.09  E-value=0.036  Score=52.83  Aligned_cols=33  Identities=33%  Similarity=0.585  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      -.|.|||+|..|..-|..++..|++|+++|.++
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~   39 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP   39 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence            479999999999999999999999999999874

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=94.07  E-value=0.054  Score=50.88  Aligned_cols=33  Identities=30%  Similarity=0.416  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..|.|||+|..|...|..|++.|++|+++|+++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT   37 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            479999999999999999999999999999874

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=94.03  E-value=0.054  Score=53.20  Aligned_cols=34  Identities=32%  Similarity=0.395  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ...|+|+|+|++|+.+|..|...|.+|+++|+++
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  223 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRP  223 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSST
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            4689999999999999999999999999999985

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=93.97  E-value=0.059  Score=51.12  Aligned_cols=32  Identities=31%  Similarity=0.578  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .|.|||+|..|...|..|++.|++|+++|+++
T Consensus        17 ~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           17 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            69999999999999999999999999999874

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=93.81  E-value=0.048  Score=52.05  Aligned_cols=32  Identities=31%  Similarity=0.537  Sum_probs=29.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      .+|.|||+|-.|.+.|..|++.|.+|++++|+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~   34 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRR   34 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcC
Confidence            57999999999999999999999999999986

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=93.75  E-value=0.06  Score=48.43  Aligned_cols=33  Identities=21%  Similarity=0.424  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      .-.|+|||||.+|...|..|.+.|.+|+|+++.
T Consensus        31 gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           31 GRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             TCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            468999999999999999999999999999875

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=93.72  E-value=0.042  Score=55.23  Aligned_cols=35  Identities=17%  Similarity=0.469  Sum_probs=31.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE   95 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~   95 (506)
                      ..|+|||.|++|+++|..|+++|++|++.|.+...
T Consensus         6 ~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~   40 (439)
T 2x5o_A            6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (439)
T ss_dssp             CCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSC
T ss_pred             CEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCc
Confidence            47999999999999999999999999999987643

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=93.46  E-value=0.027  Score=56.91  Aligned_cols=35  Identities=26%  Similarity=0.596  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      .++|+|+|+|-.|..+|..|.+.|++|+|+|+++.
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~   37 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGD   37 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            47899999999999999999999999999999853

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=93.44  E-value=0.075  Score=49.86  Aligned_cols=33  Identities=27%  Similarity=0.383  Sum_probs=30.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      +|.|||+|..|...|..|++.|++|++++|++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            589999999999999999999999999998753

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=93.43  E-value=0.071  Score=51.29  Aligned_cols=33  Identities=18%  Similarity=0.246  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      .+|.|||||-.|.++|..|++.|+ +|+++|+++
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            589999999999999999999998 999999874

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=93.41  E-value=0.058  Score=54.43  Aligned_cols=33  Identities=36%  Similarity=0.390  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      -.|.|||.|.+|+++|..|+++|++|++.|+++
T Consensus        10 k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A           10 KKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             CEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            579999999999999999999999999999875

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=93.39  E-value=0.067  Score=54.28  Aligned_cols=34  Identities=24%  Similarity=0.458  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +++|.|||+|-.|+.+|..|++.|++|+++|+++
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            5799999999999999999999999999999874

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=93.38  E-value=0.041  Score=51.12  Aligned_cols=34  Identities=24%  Similarity=0.513  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ...|+|||||.+|+..|..|.+.|.+|+|++...
T Consensus        13 ~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            3689999999999999999999999999999763

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=93.37  E-value=0.058  Score=51.07  Aligned_cols=36  Identities=19%  Similarity=0.225  Sum_probs=32.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      +..+|.|||.|..|...|..|++.|++|+++++++.
T Consensus        14 ~~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           14 EQLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             -CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            356899999999999999999999999999999864

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=93.36  E-value=0.086  Score=47.00  Aligned_cols=35  Identities=17%  Similarity=0.341  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      ...|.|||+|-.|.+.|..|++.|++|+++++++.
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            46799999999999999999999999999998753

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=93.33  E-value=0.089  Score=50.37  Aligned_cols=34  Identities=21%  Similarity=0.431  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      ..+|.|||||-.|..+|..|+..|+ +|+++|.++
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            3589999999999999999999998 999999874

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=93.30  E-value=0.069  Score=53.07  Aligned_cols=35  Identities=26%  Similarity=0.409  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      +.+|+|||.|..|..+|..|.+.|++|+++|+++.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~   38 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD   38 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            35799999999999999999999999999999863

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=93.25  E-value=0.063  Score=50.75  Aligned_cols=33  Identities=24%  Similarity=0.435  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .+|.|||+|-.|.+.|..|++.|.+|++++|++
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            579999999999999999999999999999974

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=93.23  E-value=0.075  Score=53.49  Aligned_cols=33  Identities=36%  Similarity=0.513  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .+|.|||+|-.|+.+|..|++.|++|+++|+++
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            579999999999999999999999999999874

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=93.22  E-value=0.065  Score=52.21  Aligned_cols=34  Identities=26%  Similarity=0.335  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ...|+|+|+|.+|+.+|..|...|.+|+++|+++
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  217 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRLGAKTTGYDVRP  217 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred             CCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3689999999999999999999999999999884

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=93.22  E-value=0.16  Score=51.97  Aligned_cols=34  Identities=29%  Similarity=0.486  Sum_probs=29.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKD--GRRVHVIERDLS   94 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~~   94 (506)
                      -+|+|||+|-+|.-.+..|+++  +.+|+++=|.+.
T Consensus       247 KrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~~  282 (501)
T 4b63_A          247 YNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSA  282 (501)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSSS
T ss_pred             cEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence            3699999999999999999875  679999998753

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=93.21  E-value=0.092  Score=50.44  Aligned_cols=33  Identities=21%  Similarity=0.322  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      ..|.|||||..|.++|..|++.|+ +|+++|.++
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~   48 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE   48 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            589999999999999999999999 999999874

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=93.17  E-value=0.079  Score=51.51  Aligned_cols=34  Identities=32%  Similarity=0.397  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..+|.|||+|..|...|..|++.|++|+++++++
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3589999999999999999999999999999863

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=93.16  E-value=0.082  Score=50.54  Aligned_cols=33  Identities=27%  Similarity=0.422  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC--cEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR--RVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~   93 (506)
                      .+|+|||+|-.|.++|..|++.|+  +|+++|+++
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            589999999999999999999999  999999873

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=93.11  E-value=0.27  Score=48.67  Aligned_cols=48  Identities=15%  Similarity=0.205  Sum_probs=32.1

Q ss_pred             HHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcc
Q 010623          166 QRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFS  223 (506)
Q Consensus       166 ~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S  223 (506)
                      +.+.+.+++. +++++.++ |++++.+     +|  ..++|++  +.+|.||.|.|...
T Consensus       222 ~~~~~~l~~~-gV~~~~~~~v~~i~~~-----~v--~~~~g~~--~~~D~vi~a~G~~~  270 (409)
T 3h8l_A          222 KAVASIYNQL-GIKLVHNFKIKEIREH-----EI--VDEKGNT--IPADITILLPPYTG  270 (409)
T ss_dssp             HHHHHHHHHH-TCEEECSCCEEEECSS-----EE--EETTSCE--EECSEEEEECCEEC
T ss_pred             HHHHHHHHHC-CCEEEcCCceEEECCC-----eE--EECCCCE--EeeeEEEECCCCCc
Confidence            3444445554 78888875 8888543     23  3567764  67999999999643

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=93.09  E-value=0.092  Score=50.63  Aligned_cols=32  Identities=34%  Similarity=0.617  Sum_probs=30.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      .+|.|||+|-.|.+.|..|++.|++|++++|.
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            58999999999999999999999999999974

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=93.06  E-value=0.089  Score=52.75  Aligned_cols=35  Identities=17%  Similarity=0.412  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      +.++.|||.|-.|+.+|..|++.|++|+++++++.
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~   42 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR   42 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            57899999999999999999999999999999864

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=93.03  E-value=0.072  Score=49.01  Aligned_cols=33  Identities=30%  Similarity=0.499  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      .+|+|||+|..|..+|..|++.|+ +++|+|++.
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            589999999999999999999998 899999874

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=92.77  E-value=0.096  Score=49.75  Aligned_cols=33  Identities=27%  Similarity=0.461  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .+|.|||+|..|...|..|++.|++|+++++++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            479999999999999999999999999999863

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=92.66  E-value=0.11  Score=49.43  Aligned_cols=33  Identities=36%  Similarity=0.572  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .+|.|||.|..|...|..|++.|++|+++++++
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~   54 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTL   54 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            579999999999999999999999999999875

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=92.61  E-value=0.13  Score=51.96  Aligned_cols=35  Identities=20%  Similarity=0.363  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      .-+|+|||||+.|+-+|..|++.|.+|+++|+.+.
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~  204 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKE  204 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence            46899999999999999999999999999999864

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=92.40  E-value=0.12  Score=52.34  Aligned_cols=34  Identities=24%  Similarity=0.267  Sum_probs=32.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC-CC-cEEEEecCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKD-GR-RVHVIERDLS   94 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~-G~-~v~vvE~~~~   94 (506)
                      .+|.|||+|..|+.+|..|++. |+ +|+++|+++.
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            5899999999999999999999 99 9999999865

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=92.37  E-value=0.12  Score=50.22  Aligned_cols=37  Identities=22%  Similarity=0.340  Sum_probs=32.1

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        57 ~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      |....+|.|||.|..|...|..|++.|++|+++++++
T Consensus        19 Mm~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~   55 (358)
T 4e21_A           19 YFQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV   55 (358)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             hhcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            4445789999999999999999999999999999874

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=92.36  E-value=0.12  Score=50.48  Aligned_cols=33  Identities=24%  Similarity=0.531  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      -.|+|+|+|.+|+.++..|+..|.+|+++++++
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            589999999999999999999999999999873

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=92.31  E-value=0.13  Score=49.37  Aligned_cols=34  Identities=18%  Similarity=0.220  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHH-HHHHHHHCCCcEEEEecCCC
Q 010623           61 ADVIVVGAGVAGAA-LANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        61 ~dVvIVGgG~aGl~-~A~~La~~G~~v~vvE~~~~   94 (506)
                      .+|.|||.|.+|++ +|..|.++|++|.+.|+.+.
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             cEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            47999999999996 89999999999999999753

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=92.27  E-value=0.14  Score=50.39  Aligned_cols=34  Identities=32%  Similarity=0.369  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ...|+|+|+|.+|+.+|..|...|.+|+++|+++
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~  205 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA  205 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999999874

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=92.27  E-value=0.12  Score=51.06  Aligned_cols=34  Identities=35%  Similarity=0.452  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ...|+|+|+|.+|+.+|..|...|.+|+++|+++
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~  205 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP  205 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3689999999999999999999999999999874

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=92.24  E-value=0.051  Score=45.20  Aligned_cols=33  Identities=21%  Similarity=0.439  Sum_probs=30.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..|+|||+|..|...|..|++.|++|+++++++
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            479999999999999999999999999999874

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=92.22  E-value=0.12  Score=49.03  Aligned_cols=33  Identities=24%  Similarity=0.293  Sum_probs=30.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +.+|+|||+|-.|.+.|..|+ .|.+|+++.|++
T Consensus         2 ~mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            2 SLKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            368999999999999999999 999999999873

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=92.20  E-value=0.12  Score=51.44  Aligned_cols=33  Identities=15%  Similarity=0.218  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..+|.|||+|..|+.+|..|++ |++|+++|+++
T Consensus        36 ~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~   68 (432)
T 3pid_A           36 FMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQ   68 (432)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCH
Confidence            4689999999999999999998 99999999875

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=92.19  E-value=0.13  Score=49.51  Aligned_cols=35  Identities=29%  Similarity=0.476  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ++.+|.|||+|..|.+.|..|++.|++|++++|++
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~   47 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK   47 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            46889999999999999999999999999999863

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=92.11  E-value=0.15  Score=49.51  Aligned_cols=34  Identities=32%  Similarity=0.526  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..+|.|||+|-.|.+.|..|++.|++|+++++++
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~   62 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYES   62 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            3689999999999999999999999999999874

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=91.94  E-value=0.18  Score=51.34  Aligned_cols=35  Identities=23%  Similarity=0.430  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      .-+|+|||||+.|+-+|..|++.|.+|+++|+.+.
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~  225 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDL  225 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCc
Confidence            46899999999999999999999999999999864

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=91.94  E-value=0.15  Score=48.47  Aligned_cols=32  Identities=34%  Similarity=0.519  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC--cEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGR--RVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~   93 (506)
                      +|.|||+|..|.++|..|+..|+  +|+++|+++
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            68999999999999999999999  999999873

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=91.88  E-value=0.17  Score=50.44  Aligned_cols=34  Identities=29%  Similarity=0.279  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ...|.|||.|-+||.+|..|++.|++|+.+|-++
T Consensus        21 m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~   54 (444)
T 3vtf_A           21 MASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP   54 (444)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            4689999999999999999999999999999874

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=91.75  E-value=0.15  Score=49.61  Aligned_cols=33  Identities=27%  Similarity=0.580  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERD   92 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~   92 (506)
                      +.+|+|+|||.+|..+|..|...|. +|+++|++
T Consensus       188 d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~  221 (398)
T 2a9f_A          188 EVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKF  221 (398)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             ccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            4799999999999999999999999 99999987

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=91.75  E-value=0.14  Score=47.97  Aligned_cols=33  Identities=30%  Similarity=0.501  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .+|.|||.|..|...|..|++.|++|+++++++
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   34 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSP   34 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            469999999999999999999999999999875

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=91.67  E-value=0.18  Score=47.95  Aligned_cols=33  Identities=21%  Similarity=0.345  Sum_probs=30.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      .+|.|||+|-.|..+|..|+..|+ +|+++|.++
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            479999999999999999999997 999999874

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=91.61  E-value=0.19  Score=45.99  Aligned_cols=34  Identities=32%  Similarity=0.523  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ...|.|||+|-.|.++|..|++.|++|++++|++
T Consensus        19 ~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~   52 (245)
T 3dtt_A           19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDP   52 (245)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            4789999999999999999999999999999875

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=91.41  E-value=0.19  Score=47.83  Aligned_cols=32  Identities=31%  Similarity=0.454  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHC--CCcEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKD--GRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~   93 (506)
                      +|.|||+|-.|.++|..|++.  |.+|+++|+++
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            689999999999999999985  78999999974

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=91.38  E-value=0.14  Score=51.32  Aligned_cols=32  Identities=25%  Similarity=0.389  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +|.|||+|-.|+.+|..|++.|++|+++++++
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999999999999999874

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=91.37  E-value=0.17  Score=48.26  Aligned_cols=32  Identities=31%  Similarity=0.529  Sum_probs=29.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      ..+|.|||+|-.|.+.|..|++.|++|+++ ++
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~   50 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-AR   50 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-Ec
Confidence            468999999999999999999999999999 65

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=91.35  E-value=0.21  Score=47.54  Aligned_cols=32  Identities=34%  Similarity=0.437  Sum_probs=30.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERD   92 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~   92 (506)
                      .+|.|||+|..|.++|..|++.|+ +|+++|..
T Consensus         9 ~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            9 KKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            579999999999999999999999 99999987

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=91.33  E-value=0.18  Score=49.34  Aligned_cols=33  Identities=24%  Similarity=0.480  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..|+|+|+|..|+.+|..|+..|.+|+++++++
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            579999999999999999999999999999873

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=91.33  E-value=0.19  Score=47.61  Aligned_cols=34  Identities=24%  Similarity=0.269  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..+|.|||.|..|...|..|++.|++|+++++++
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            3579999999999999999999999999999874

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=91.31  E-value=0.14  Score=47.95  Aligned_cols=34  Identities=26%  Similarity=0.423  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      ...|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        36 ~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           36 TFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             GCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            4799999999999999999999998 899999874

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=91.31  E-value=0.23  Score=47.21  Aligned_cols=34  Identities=29%  Similarity=0.491  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..+|.|||+|..|...|..|++.|++|+++++++
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~   63 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTA   63 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3689999999999999999999999999999874

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=91.27  E-value=0.2  Score=50.54  Aligned_cols=33  Identities=33%  Similarity=0.466  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..|.|||+|..|...|..|++.|++|+++|+++
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            469999999999999999999999999999874

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=91.21  E-value=0.19  Score=47.24  Aligned_cols=33  Identities=27%  Similarity=0.431  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ...|.|||+|..|...|..|+ .|++|+++|+++
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            468999999999999999999 999999999874

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=91.15  E-value=0.23  Score=47.43  Aligned_cols=34  Identities=18%  Similarity=0.315  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      ..+|.|||+|..|.++|..|+..|+ +++++|.++
T Consensus         7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~   41 (324)
T 3gvi_A            7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE   41 (324)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            3689999999999999999999999 999999875

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=91.14  E-value=0.22  Score=47.54  Aligned_cols=34  Identities=29%  Similarity=0.377  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR--RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~   93 (506)
                      ..+|.|||+|-+|.++|+.|+..|+  +++++|.+.
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            4689999999999999999999998  899999874

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=91.14  E-value=0.21  Score=47.82  Aligned_cols=34  Identities=21%  Similarity=0.480  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      ...|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            4799999999999999999999998 789999875

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=91.10  E-value=0.25  Score=44.16  Aligned_cols=34  Identities=29%  Similarity=0.352  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ...|.|||+|-.|...|..|++.|++|++++|++
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999999874

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=90.99  E-value=0.24  Score=48.12  Aligned_cols=35  Identities=20%  Similarity=0.336  Sum_probs=31.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP   96 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~   96 (506)
                      .|+|+|||..|..+|+.+++.|++|+++|.++...
T Consensus         3 ~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~~~   37 (363)
T 4ffl_A            3 TICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQAL   37 (363)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCT
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCh
Confidence            59999999999999999999999999999886543

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=90.88  E-value=0.31  Score=46.17  Aligned_cols=34  Identities=38%  Similarity=0.643  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..+|.|||.|..|...|..|++.|++|+++++++
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~   42 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP   42 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999999874

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=90.85  E-value=0.082  Score=47.98  Aligned_cols=33  Identities=12%  Similarity=0.101  Sum_probs=30.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +..|+|+|+|..|..+|..|.+.|+ |+++|+++
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~   41 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDEN   41 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGG
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCH
Confidence            4579999999999999999999999 99999875

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=90.83  E-value=0.25  Score=45.78  Aligned_cols=34  Identities=35%  Similarity=0.534  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ...|+|+|+|.+|.++|..|++.|.+|+|+.|..
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~  151 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSS  151 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4589999999999999999999999999999875

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=90.82  E-value=0.6  Score=48.40  Aligned_cols=35  Identities=11%  Similarity=0.240  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      +-+|+|+|.|..|..+|..|.+.|++|+++|+++.
T Consensus       127 ~~hviI~G~g~~g~~la~~L~~~~~~vvvid~~~~  161 (565)
T 4gx0_A          127 RGHILIFGIDPITRTLIRKLESRNHLFVVVTDNYD  161 (565)
T ss_dssp             CSCEEEESCCHHHHHHHHHTTTTTCCEEEEESCHH
T ss_pred             CCeEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence            46899999999999999999999999999999853

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=90.76  E-value=0.15  Score=49.81  Aligned_cols=32  Identities=38%  Similarity=0.488  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +|.|||+|..|.+.|..|++.|++|+++++++
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            79999999999999999999999999999873

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=90.74  E-value=0.22  Score=48.84  Aligned_cols=34  Identities=38%  Similarity=0.561  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ...|+|+|+|..|+.+|..|+..|.+|+++++++
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3579999999999999999999999999999873

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=90.73  E-value=0.23  Score=53.02  Aligned_cols=35  Identities=23%  Similarity=0.326  Sum_probs=31.8

Q ss_pred             CCcEEEEC--CCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           60 DADVIVVG--AGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVG--gG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      .-+|+|||  ||.+|+-+|..|++.|.+|+++++.+.
T Consensus       523 g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~  559 (690)
T 3k30_A          523 GKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQ  559 (690)
T ss_dssp             SSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccc
Confidence            34699999  999999999999999999999998864

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=90.68  E-value=0.22  Score=48.38  Aligned_cols=33  Identities=30%  Similarity=0.488  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERD   92 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~   92 (506)
                      +.+|+|+|||-+|..+|..|...|. +|+++|+.
T Consensus       192 ~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          192 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            4799999999999999999999999 89999987

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=90.66  E-value=0.19  Score=47.34  Aligned_cols=33  Identities=27%  Similarity=0.476  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .+|.|||+|..|...|..|++.|++|.++++++
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   38 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   38 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            579999999999999999999999999999874

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=90.58  E-value=0.21  Score=47.12  Aligned_cols=34  Identities=24%  Similarity=0.324  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..+|.|||+|-.|...|..|++.|++|+++++++
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            4689999999999999999999999999999874

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=90.49  E-value=0.25  Score=45.90  Aligned_cols=32  Identities=22%  Similarity=0.308  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      ..|+|+|+|.+|.++|..|++.|.+|+++.|+
T Consensus       120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~  151 (271)
T 1nyt_A          120 LRILLIGAGGASRGVLLPLLSLDCAVTITNRT  151 (271)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCEEEEEECC
Confidence            47999999999999999999999999999887

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=90.49  E-value=0.22  Score=45.69  Aligned_cols=34  Identities=29%  Similarity=0.430  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      ...|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            3689999999999999999999998 889999874

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=90.48  E-value=0.19  Score=48.26  Aligned_cols=30  Identities=33%  Similarity=0.547  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEec
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIER   91 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~   91 (506)
                      +|.|||+|..|.+.|..|++.|++|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            589999999999999999999999999998

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=90.48  E-value=0.28  Score=49.97  Aligned_cols=35  Identities=29%  Similarity=0.343  Sum_probs=32.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +..+|.|||.|..|..+|..|+++|++|++++|++
T Consensus         9 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~   43 (497)
T 2p4q_A            9 MSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQ   43 (497)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            35789999999999999999999999999999875

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=90.46  E-value=0.22  Score=47.58  Aligned_cols=34  Identities=18%  Similarity=0.302  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC-CcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDG-RRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G-~~v~vvE~~~   93 (506)
                      ..+|.|||.|..|...|..|++.| ++|+++++++
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            357999999999999999999999 9999999985

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=90.44  E-value=0.24  Score=47.33  Aligned_cols=34  Identities=24%  Similarity=0.438  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..+|.|||.|..|...|..|++.|++|+++++++
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   64 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTP   64 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            3589999999999999999999999999999874

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=90.38  E-value=0.31  Score=46.46  Aligned_cols=33  Identities=24%  Similarity=0.300  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      ..|.|||+|..|.++|..|+..|+ +++++|.++
T Consensus         6 ~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~   39 (321)
T 3p7m_A            6 KKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ   39 (321)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence            589999999999999999999998 999999875

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=90.31  E-value=0.21  Score=50.22  Aligned_cols=34  Identities=35%  Similarity=0.420  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .-.|+|+|+|..|.++|..|+..|.+|+++|+++
T Consensus       265 GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          265 GKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3579999999999999999999999999998863

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=90.28  E-value=0.26  Score=47.16  Aligned_cols=33  Identities=30%  Similarity=0.495  Sum_probs=30.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEecC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR--RVHVIERD   92 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~   92 (506)
                      ...|.|||+|..|.++|..|+..|+  +++++|.+
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~   39 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVN   39 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc
Confidence            3689999999999999999999997  89999986

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=90.21  E-value=0.17  Score=47.45  Aligned_cols=32  Identities=28%  Similarity=0.452  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +|.|||.|..|...|..|++.|++|+++++++
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~   34 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNP   34 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTCCEEEECSSG
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            69999999999999999999999999999875

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=90.18  E-value=0.2  Score=50.61  Aligned_cols=33  Identities=24%  Similarity=0.418  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKD--GRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~   93 (506)
                      .+|.|||.|-.|+.+|..|++.  |++|+++++++
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE   40 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            5799999999999999999999  89999999874

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=90.10  E-value=0.27  Score=49.86  Aligned_cols=33  Identities=30%  Similarity=0.513  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..|.|||+|..|...|..|++.|++|+++|+++
T Consensus         6 ~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~   38 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAASHGHQVLLYDISA   38 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            479999999999999999999999999999874

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=90.02  E-value=0.28  Score=44.25  Aligned_cols=34  Identities=29%  Similarity=0.402  Sum_probs=31.4

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGA-GVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGg-G~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ...|+|.|| |-.|..++..|.++|++|+++.|++
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence            467999998 9999999999999999999999874

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=89.99  E-value=0.3  Score=50.71  Aligned_cols=57  Identities=19%  Similarity=0.186  Sum_probs=41.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccc--cchHHHHHHhCch
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQ--PGGYLKLIELGLE  118 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~--~~~~~~l~~~g~~  118 (506)
                      -+|+|||+|..|..+|..|.+.|++|+++|+++..-.... ..+.  ....+.|++.|+.
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~-~~i~gD~t~~~~L~~agi~  407 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDH-VVVYGDATVGQTLRQAGID  407 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSS-CEEESCSSSSTHHHHHTTT
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcC-CEEEeCCCCHHHHHhcCcc
Confidence            7899999999999999999999999999999875433221 1111  1223566666664

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=89.96  E-value=1.6  Score=43.42  Aligned_cols=53  Identities=15%  Similarity=0.129  Sum_probs=38.1

Q ss_pred             HHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcc
Q 010623          165 VQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFS  223 (506)
Q Consensus       165 ~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S  223 (506)
                      .+.+.+.++++ |++++.++ |++++.  +   .+.+.+.+|+..++.+|++|.|.|...
T Consensus       203 ~~~l~~~l~~~-GV~~~~~~~v~~v~~--~---~~~~~~~~g~~~~i~~d~vi~~~G~~~  256 (430)
T 3hyw_A          203 KRLVEDLFAER-NIDWIANVAVKAIEP--D---KVIYEDLNGNTHEVPAKFTMFMPSFQG  256 (430)
T ss_dssp             HHHHHHHHHHT-TCEEECSCEEEEECS--S---EEEEECTTSCEEEEECSEEEEECEEEC
T ss_pred             HHHHHHHHHhC-CeEEEeCceEEEEeC--C---ceEEEeeCCCceEeecceEEEeccCCC
Confidence            34455556666 88998885 888743  3   355667777777899999999999654

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=89.88  E-value=0.15  Score=45.71  Aligned_cols=33  Identities=24%  Similarity=0.360  Sum_probs=30.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEE-EecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHV-IERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~v-vE~~~   93 (506)
                      .+|.|||+|-.|.+.|..|++.|++|++ ++|++
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~   57 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAAQIPAIIANSRGP   57 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCH
Confidence            5899999999999999999999999999 88764

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=89.87  E-value=0.31  Score=43.24  Aligned_cols=32  Identities=34%  Similarity=0.398  Sum_probs=29.8

Q ss_pred             cEEEEC-CCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVVG-AGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVG-gG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +|+|+| +|-.|...|..|++.|++|++++|++
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            589999 99999999999999999999999873

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=89.82  E-value=0.33  Score=46.40  Aligned_cols=34  Identities=26%  Similarity=0.400  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC----CcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDG----RRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G----~~v~vvE~~~   93 (506)
                      ..+|.|||+|-.|.+.|..|++.|    ++|++++|++
T Consensus        22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM   59 (322)
T ss_dssp             CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence            457999999999999999999999    7999999874

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=89.76  E-value=0.64  Score=45.43  Aligned_cols=36  Identities=25%  Similarity=0.391  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE   95 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~   95 (506)
                      ...|+|+|+|..|..+|..+++.|++|++++..+..
T Consensus        12 ~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~~   47 (377)
T 3orq_A           12 GATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDC   47 (377)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence            457999999999999999999999999999987543

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=89.73  E-value=0.22  Score=49.30  Aligned_cols=31  Identities=23%  Similarity=0.357  Sum_probs=29.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +|.|||+|-.|+.+|..|++ |++|+++++++
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence            58999999999999999999 99999999874

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=89.69  E-value=0.27  Score=49.52  Aligned_cols=32  Identities=28%  Similarity=0.395  Sum_probs=30.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      ..|+|||||.+|...|..|.+.|.+|+|+++.
T Consensus        13 ~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~   44 (457)
T 1pjq_A           13 RDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (457)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence            57999999999999999999999999999975

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=89.66  E-value=0.44  Score=44.95  Aligned_cols=33  Identities=24%  Similarity=0.521  Sum_probs=30.7

Q ss_pred             CcEEEEC-CCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVG-AGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVG-gG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..|.||| +|-.|.+.|..|++.|++|+++++++
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~   55 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGYPISILDRED   55 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence            4799999 99999999999999999999999874

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=89.62  E-value=0.29  Score=50.00  Aligned_cols=35  Identities=23%  Similarity=0.276  Sum_probs=33.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .++|++|||+|++|+++|..|++.|.+|+|+|+..
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~   38 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   38 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            35899999999999999999999999999999976

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=89.60  E-value=0.29  Score=46.16  Aligned_cols=33  Identities=21%  Similarity=0.436  Sum_probs=30.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      ..|+|+|+|.+|.++|..|++.|. +|+|+.|..
T Consensus       142 ~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          142 KRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            479999999999999999999998 999998873

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=89.57  E-value=0.27  Score=46.99  Aligned_cols=32  Identities=28%  Similarity=0.392  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC--cEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGR--RVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~   93 (506)
                      .|.|||+|-.|.++|..|++.|+  +|+++|+++
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            58999999999999999999999  999999873

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=89.57  E-value=0.28  Score=47.47  Aligned_cols=34  Identities=29%  Similarity=0.551  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      ...|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus       118 ~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          118 NAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            5789999999999999999999998 899999874

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=89.56  E-value=0.33  Score=45.22  Aligned_cols=32  Identities=34%  Similarity=0.528  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .|.|||+|..|.+.|..|++.|++|+++++++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999999999999998863

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=89.52  E-value=0.28  Score=46.20  Aligned_cols=32  Identities=22%  Similarity=0.215  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC--cEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGR--RVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~   93 (506)
                      +|.|||+|..|.++|..|++.|+  +++++|+++
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~   35 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence            68999999999999999999998  899999874

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=89.51  E-value=0.4  Score=45.75  Aligned_cols=33  Identities=21%  Similarity=0.231  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEecC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR--RVHVIERD   92 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~   92 (506)
                      ...|.|||+|..|.++|+.|+..|+  +++++|.+
T Consensus        21 ~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~   55 (330)
T 3ldh_A           21 YNKITVVGCDAVGMADAISVLMKDLADEVALVDVM   55 (330)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECC
Confidence            4689999999999999999999998  89999986

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=89.50  E-value=0.35  Score=44.47  Aligned_cols=34  Identities=21%  Similarity=0.282  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC----CcEEEEecCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDG----RRVHVIERDLS   94 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G----~~v~vvE~~~~   94 (506)
                      .+|.|||+|-.|.+.|..|++.|    ++|.++++++.
T Consensus         5 m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            5 IKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKK   42 (262)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence            57999999999999999999999    79999999864

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=89.37  E-value=0.33  Score=49.22  Aligned_cols=35  Identities=29%  Similarity=0.391  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ++.+|.|||+|..|..+|..|++.|++|++++|++
T Consensus        14 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~   48 (480)
T 2zyd_A           14 SKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSR   48 (480)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             CCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            35689999999999999999999999999999874

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=89.26  E-value=0.11  Score=46.81  Aligned_cols=32  Identities=22%  Similarity=0.284  Sum_probs=30.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEec
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIER   91 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~   91 (506)
                      ..+|.|||.|..|.++|..|++.|++|+++++
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~   37 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHA   37 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHTTCEEEECSS
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecC
Confidence            36899999999999999999999999999987

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=89.21  E-value=0.4  Score=48.43  Aligned_cols=33  Identities=27%  Similarity=0.457  Sum_probs=31.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .+|.|||.|..|..+|..|+++|++|+++++++
T Consensus         5 ~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~   37 (484)
T 4gwg_A            5 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   37 (484)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            589999999999999999999999999999985

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=89.14  E-value=0.24  Score=47.09  Aligned_cols=31  Identities=32%  Similarity=0.398  Sum_probs=29.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC-----C-CcEEEEec
Q 010623           61 ADVIVVGAGVAGAALANTLAKD-----G-RRVHVIER   91 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~-----G-~~v~vvE~   91 (506)
                      .+|.|||+|..|.+.|..|++.     | ++|++++|
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            5799999999999999999999     9 99999987

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=89.08  E-value=0.41  Score=45.55  Aligned_cols=33  Identities=24%  Similarity=0.527  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC--cEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR--RVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~   93 (506)
                      ..|.|||.|..|.+.|..|++.|+  +|+++++++
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            579999999999999999999999  999999874

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=89.05  E-value=0.34  Score=46.15  Aligned_cols=35  Identities=26%  Similarity=0.506  Sum_probs=31.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEecC
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGR--RVHVIERD   92 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~   92 (506)
                      +++..|.|||+|-+|.++|+.|+..++  .+.++|.+
T Consensus         3 ~~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~   39 (318)
T 1ez4_A            3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (318)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            345789999999999999999999887  89999985

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=88.92  E-value=0.35  Score=45.94  Aligned_cols=32  Identities=31%  Similarity=0.487  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC--cEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGR--RVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~   93 (506)
                      .|.|||+|..|.++|..|++.|+  +++++|..+
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~   35 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD   35 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch
Confidence            68999999999999999999997  899999875

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=88.89  E-value=0.29  Score=45.63  Aligned_cols=33  Identities=36%  Similarity=0.500  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      -.|+|+|+|.+|.++|..|++.|. +|+|+.|..
T Consensus       118 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  151 (277)
T 3don_A          118 AYILILGAGGASKGIANELYKIVRPTLTVANRTM  151 (277)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCG
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            579999999999999999999999 899999875

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=88.86  E-value=0.5  Score=43.36  Aligned_cols=32  Identities=38%  Similarity=0.549  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      .|+|+|+|-+|.+++..|.+.|. +|+|+.|.+
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~  142 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTI  142 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCH
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            89999999999999999999999 999999874

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=88.86  E-value=0.41  Score=48.55  Aligned_cols=33  Identities=27%  Similarity=0.457  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .+|.|||+|..|...|..|++.|++|++++|++
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            479999999999999999999999999999874

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=88.84  E-value=0.37  Score=45.25  Aligned_cols=32  Identities=25%  Similarity=0.317  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +|.|||+|-.|...|..|++.|++|+++++++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            58999999999999999999999999999874

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=88.77  E-value=0.5  Score=45.47  Aligned_cols=33  Identities=24%  Similarity=0.372  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..|.|||.|..|.+.|..|++.|++|+++++++
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            579999999999999999999999999999874

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=88.75  E-value=0.39  Score=49.52  Aligned_cols=34  Identities=21%  Similarity=0.480  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      ...|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus       326 ~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~  360 (615)
T 4gsl_A          326 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT  360 (615)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence            4789999999999999999999998 899999875

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=88.71  E-value=0.33  Score=47.85  Aligned_cols=34  Identities=32%  Similarity=0.369  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .-.|+|+|.|..|..+|..|...|.+|+++|+++
T Consensus       220 GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp  253 (435)
T 3gvp_A          220 GKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP  253 (435)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            4689999999999999999999999999999874

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=88.64  E-value=0.36  Score=45.66  Aligned_cols=33  Identities=24%  Similarity=0.410  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC--cEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR--RVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~   93 (506)
                      ..|.|||||..|...|+.|+..|+  +++|+|.++
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~   49 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISAKGIADRLVLLDLSE   49 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence            589999999999999999999998  999999875

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=88.61  E-value=0.31  Score=45.37  Aligned_cols=33  Identities=21%  Similarity=0.377  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..|+|+|+|.+|.++|..|++.|.+|+|+.|..
T Consensus       120 ~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          120 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            479999999999999999999999999999873

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=88.59  E-value=0.4  Score=45.79  Aligned_cols=33  Identities=24%  Similarity=0.474  Sum_probs=30.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEecC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR--RVHVIERD   92 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~   92 (506)
                      ...|.|||+|..|.++|..|+..|+  +++++|..
T Consensus         9 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~   43 (326)
T 3vku_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            3589999999999999999999988  89999985

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=88.55  E-value=0.36  Score=44.45  Aligned_cols=32  Identities=34%  Similarity=0.540  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC-CcEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDG-RRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G-~~v~vvE~~~   93 (506)
                      .|.|||+|-.|...|..|++.| ++|.++++++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence            5899999999999999999999 9999999873

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=88.53  E-value=0.48  Score=46.36  Aligned_cols=36  Identities=31%  Similarity=0.163  Sum_probs=33.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      ....++|+|||..|.++|..++..|++|+|+|.++.
T Consensus       203 P~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~  238 (386)
T 2we8_A          203 PRPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPV  238 (386)
T ss_dssp             CCCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchh
Confidence            457999999999999999999999999999998764

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=88.48  E-value=0.57  Score=43.57  Aligned_cols=34  Identities=26%  Similarity=0.512  Sum_probs=31.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      ..|+|.|+|-.|..++..|.+.|++|+++.|++.
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            4799999999999999999999999999999754

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=88.47  E-value=0.34  Score=49.05  Aligned_cols=34  Identities=32%  Similarity=0.484  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .-.|+|||.|..|..+|..|+..|.+|+++|+++
T Consensus       274 GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~  307 (494)
T 3ce6_A          274 GKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDP  307 (494)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999999874

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=88.46  E-value=0.55  Score=43.80  Aligned_cols=33  Identities=24%  Similarity=0.488  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC---cEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR---RVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~---~v~vvE~~~   93 (506)
                      ..|.|||+|-.|.+.|..|.+.|+   +|+++++++
T Consensus         4 ~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~   39 (280)
T 3tri_A            4 SNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL   39 (280)
T ss_dssp             SCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence            579999999999999999999999   999999875

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=88.45  E-value=0.4  Score=45.66  Aligned_cols=33  Identities=24%  Similarity=0.513  Sum_probs=29.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEecC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR--RVHVIERD   92 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~   92 (506)
                      ..+|.|||+|-+|.++|..|+..|+  .+.++|.+
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~   40 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD   40 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            4689999999999999999999885  89999876

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=88.42  E-value=0.45  Score=45.17  Aligned_cols=34  Identities=26%  Similarity=0.402  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      .-.|+|+|+|-+|.++|..|++.|. +|+|+.|.+
T Consensus       154 gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~  188 (315)
T 3tnl_A          154 GKKMTICGAGGAATAICIQAALDGVKEISIFNRKD  188 (315)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCC
Confidence            3579999999999999999999999 899998873

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=88.39  E-value=0.45  Score=44.77  Aligned_cols=33  Identities=36%  Similarity=0.516  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..|.|||+|..|..+|..|+..|.+|+++++.+
T Consensus       156 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          156 ANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            579999999999999999999999999999874

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=88.39  E-value=0.55  Score=42.83  Aligned_cols=33  Identities=12%  Similarity=0.264  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC----cEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR----RVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~----~v~vvE~~~   93 (506)
                      .+|.|||+|-.|.+.|..|.+.|+    +|.++++++
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~   39 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNT   39 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCH
Confidence            479999999999999999999998    999999874

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=88.31  E-value=0.32  Score=47.58  Aligned_cols=34  Identities=18%  Similarity=0.329  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC-------CcEEEEecCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDG-------RRVHVIERDLS   94 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G-------~~v~vvE~~~~   94 (506)
                      .+|.|||+|-.|.+.|..|++.|       ++|+++++++.
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            47999999999999999999999       99999998754

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=88.28  E-value=0.51  Score=41.79  Aligned_cols=32  Identities=28%  Similarity=0.504  Sum_probs=29.8

Q ss_pred             cEEEECC-CHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVVGA-GVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGg-G~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .|+|.|| |-.|..++..|.++|++|+++.|++
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            5999996 9999999999999999999999974

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=88.26  E-value=0.24  Score=47.92  Aligned_cols=34  Identities=26%  Similarity=0.382  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC-------CcEEEEecCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDG-------RRVHVIERDLS   94 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G-------~~v~vvE~~~~   94 (506)
                      .+|.|||+|..|.+.|..|++.|       ++|+++++++.
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            47999999999999999999999       89999998754

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=88.22  E-value=0.56  Score=44.83  Aligned_cols=33  Identities=21%  Similarity=0.341  Sum_probs=30.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEecC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR--RVHVIERD   92 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~   92 (506)
                      ...|.|||+|..|.++|+.|+..|+  +++++|..
T Consensus        19 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~   53 (331)
T 4aj2_A           19 QNKITVVGVGAVGMACAISILMKDLADELALVDVI   53 (331)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC
Confidence            4689999999999999999999998  89999986

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=88.22  E-value=0.37  Score=45.73  Aligned_cols=32  Identities=28%  Similarity=0.450  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC--CcEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDG--RRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G--~~v~vvE~~~   93 (506)
                      .|.|||+|-.|.++|..|++.|  .+|+++|+++
T Consensus         3 kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            6999999999999999999999  6999999873

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=88.20  E-value=0.47  Score=45.19  Aligned_cols=34  Identities=32%  Similarity=0.557  Sum_probs=30.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR--RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~   93 (506)
                      ...|.|||+|..|.++|+.|+..|.  +++++|.++
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~   41 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence            3689999999999999999998886  899999873

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=88.20  E-value=0.38  Score=44.75  Aligned_cols=33  Identities=24%  Similarity=0.408  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..|+|.|||..|..++..|.++|++|+++.|++
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            579999999999999999999999999999874

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=88.19  E-value=0.64  Score=42.79  Aligned_cols=34  Identities=24%  Similarity=0.261  Sum_probs=30.0

Q ss_pred             CCcEEEECC-C-HHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGA-G-VAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGg-G-~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .-.|+|.|| | -.|..+|..|+++|.+|++++|+.
T Consensus        22 ~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~   57 (266)
T 3o38_A           22 GKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHE   57 (266)
T ss_dssp             TCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCH
Confidence            346999999 7 599999999999999999999874

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=88.18  E-value=0.38  Score=45.76  Aligned_cols=33  Identities=21%  Similarity=0.314  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      .+|.|||.|..|...|..|++.|+ +|+++++++
T Consensus        25 ~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~   58 (312)
T 3qsg_A           25 MKLGFIGFGEAASAIASGLRQAGAIDMAAYDAAS   58 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            589999999999999999999999 999999873

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=88.17  E-value=0.44  Score=44.39  Aligned_cols=32  Identities=25%  Similarity=0.545  Sum_probs=29.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC--cEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGR--RVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~   93 (506)
                      .|.|||+|..|.+.|..|++.|+  +|+++++++
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            59999999999999999999998  899998863

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=88.12  E-value=0.4  Score=49.02  Aligned_cols=35  Identities=26%  Similarity=0.393  Sum_probs=33.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .++|++|||+|++|+.+|..|++.|.+|+|+|+..
T Consensus        10 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~   44 (507)
T 1coy_A           10 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGR   44 (507)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCC
Confidence            46999999999999999999999999999999975

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=88.11  E-value=0.48  Score=48.00  Aligned_cols=33  Identities=48%  Similarity=0.633  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .+|.|||+|..|...|..|+++|++|++++|++
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~   34 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999999864

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=88.06  E-value=0.54  Score=44.34  Aligned_cols=33  Identities=36%  Similarity=0.478  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..|.|||+|..|..+|..|...|.+|+++++.+
T Consensus       158 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          158 SQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            579999999999999999999999999999874

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=88.03  E-value=0.43  Score=49.10  Aligned_cols=34  Identities=21%  Similarity=0.480  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      ...|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus       327 ~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D~  361 (598)
T 3vh1_A          327 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT  361 (598)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCSB
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            4789999999999999999999998 899999874

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=88.01  E-value=0.28  Score=48.57  Aligned_cols=31  Identities=32%  Similarity=0.449  Sum_probs=28.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHH-CCCcEEEEec
Q 010623           61 ADVIVVGAGVAGAALANTLAK-DGRRVHVIER   91 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~-~G~~v~vvE~   91 (506)
                      .+|.|||+|..|.+.|..|++ .|++|+++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~   34 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTL   34 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECC
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeC
Confidence            479999999999999999998 5999999983

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=88.00  E-value=0.41  Score=51.20  Aligned_cols=33  Identities=24%  Similarity=0.399  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..|.|||+|..|...|..|++.|++|+++|+++
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  345 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNE  345 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCH
Confidence            369999999999999999999999999999985

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=87.92  E-value=0.35  Score=49.03  Aligned_cols=33  Identities=27%  Similarity=0.462  Sum_probs=30.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKD--GRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~   93 (506)
                      .+|.|||.|-.|+.+|..|++.  |++|+++|+++
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~   44 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT   44 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            4799999999999999999998  79999999874

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=87.85  E-value=0.57  Score=43.79  Aligned_cols=34  Identities=35%  Similarity=0.496  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      .-.|+|+|+|-+|.++|..|++.|. +|+|+.|..
T Consensus       127 ~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~  161 (283)
T 3jyo_A          127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT  161 (283)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCH
Confidence            3579999999999999999999999 699998873

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=87.84  E-value=0.41  Score=44.67  Aligned_cols=31  Identities=29%  Similarity=0.421  Sum_probs=29.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .|.|||+|..|...|..|++ |++|+++++++
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~   33 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF   33 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            69999999999999999999 99999999874

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=87.84  E-value=0.56  Score=44.96  Aligned_cols=35  Identities=29%  Similarity=0.442  Sum_probs=31.0

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           60 DADVIVVGA-GVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGg-G~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      ...|+|.|| |-.|..++..|.+.|++|+++.|.+.
T Consensus        19 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   54 (347)
T 4id9_A           19 SHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPS   54 (347)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            467999999 99999999999999999999999864

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=87.81  E-value=0.41  Score=44.58  Aligned_cols=33  Identities=33%  Similarity=0.544  Sum_probs=30.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..|+|||+|.+|.+.|..|.+.|.+|++++|++
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred             CEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence            579999999999999999999999999998873

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=87.80  E-value=0.61  Score=44.86  Aligned_cols=33  Identities=33%  Similarity=0.355  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..|.|||+|-.|.+.|..|++.|++|+++++++
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~   49 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSG   49 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCcCEEEEEECCh
Confidence            479999999999999999999999999999874

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=87.59  E-value=0.49  Score=46.15  Aligned_cols=35  Identities=23%  Similarity=0.334  Sum_probs=32.4

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCC---cEEEEecCC
Q 010623           59 FDADVIVVGA-GVAGAALANTLAKDGR---RVHVIERDL   93 (506)
Q Consensus        59 ~~~dVvIVGg-G~aGl~~A~~La~~G~---~v~vvE~~~   93 (506)
                      ....|+|+|| |.+|+.++..+...|.   +|+++|.++
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~  251 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKE  251 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHH
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccc
Confidence            3589999999 9999999999999998   999999875

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=87.58  E-value=0.51  Score=44.09  Aligned_cols=33  Identities=24%  Similarity=0.414  Sum_probs=30.6

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGA-GVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGg-G~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..|.|||+ |-.|...|..|++.|++|+++++++
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            47999999 9999999999999999999999863

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=87.52  E-value=0.53  Score=45.44  Aligned_cols=33  Identities=27%  Similarity=0.287  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      -.|+|+|+|+.|++++..++..|.+|+++++++
T Consensus       178 ~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~  210 (348)
T 3two_A          178 TKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNE  210 (348)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            479999999999999999999999999998764

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=87.50  E-value=0.85  Score=44.72  Aligned_cols=34  Identities=18%  Similarity=0.361  Sum_probs=31.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      -.|+|+|+|..|..+|..+.+.|++|++++..+.
T Consensus        15 k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~   48 (389)
T 3q2o_A           15 KTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKN   48 (389)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence            5899999999999999999999999999998754

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=87.45  E-value=0.42  Score=47.53  Aligned_cols=33  Identities=27%  Similarity=0.368  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ...-|||.|-.|+.+|..|++.|++|+++|+++
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~   44 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQ   44 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            467899999999999999999999999999985

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=87.39  E-value=0.39  Score=45.26  Aligned_cols=34  Identities=26%  Similarity=0.425  Sum_probs=27.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      -+|-+||-|..|...|..|.+.|++|++++|++.
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~   39 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTAS   39 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-----
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4699999999999999999999999999999864

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=87.37  E-value=0.62  Score=46.04  Aligned_cols=37  Identities=22%  Similarity=0.228  Sum_probs=32.6

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        57 ~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      |+....|+|+|||..|..++..+.+.|++|++++ .+.
T Consensus        21 mm~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d-~~~   57 (403)
T 3k5i_A           21 MWNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD-ADN   57 (403)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE-STT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CCC
Confidence            4445789999999999999999999999999999 543

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=87.36  E-value=0.6  Score=41.48  Aligned_cols=32  Identities=34%  Similarity=0.570  Sum_probs=29.9

Q ss_pred             cEEEECC-CHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVVGA-GVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGg-G~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .|+|.|| |-.|..++..|.++|++|+++.|++
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP   34 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            4999998 9999999999999999999999874

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=87.35  E-value=0.57  Score=46.63  Aligned_cols=34  Identities=41%  Similarity=0.653  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      ..+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        40 ~~~VlvvG~GGlGs~va~~La~aGvg~i~ivD~D~   74 (434)
T 1tt5_B           40 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   74 (434)
T ss_dssp             TCCEEEECSSTHHHHHHHHHHHTTCCCEEEEECCB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            5799999999999999999999998 899999874

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=87.27  E-value=1.1  Score=47.67  Aligned_cols=33  Identities=33%  Similarity=0.466  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      -.|.|||||..|...|..++..|++|+++|.++
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~  349 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFARVGISVVAVESDP  349 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCchhcccchH
Confidence            589999999999999999999999999999875

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=87.21  E-value=0.63  Score=47.05  Aligned_cols=34  Identities=32%  Similarity=0.416  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +.+|.|||+|..|...|..|++.|++|.+++|++
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~   38 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTT   38 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            3689999999999999999999999999999874

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=87.17  E-value=0.49  Score=45.68  Aligned_cols=34  Identities=24%  Similarity=0.412  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      ..+|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus        36 ~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~   70 (346)
T 1y8q_A           36 ASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQ   70 (346)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCC
Confidence            3699999999999999999999999 899999774

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=87.11  E-value=0.5  Score=44.07  Aligned_cols=34  Identities=24%  Similarity=0.331  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      .-.|+|+|+|-+|.++|..|++.|. +|+|+.|..
T Consensus       122 ~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~  156 (282)
T 3fbt_A          122 NNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNP  156 (282)
T ss_dssp             TSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            4589999999999999999999998 899998873

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=86.96  E-value=0.62  Score=44.13  Aligned_cols=34  Identities=24%  Similarity=0.434  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      .-.|+|+|+|-+|.++|..|++.|. +|+|+.|.+
T Consensus       148 gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~  182 (312)
T 3t4e_A          148 GKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKD  182 (312)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCC
Confidence            3579999999999999999999998 799998873

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=86.92  E-value=0.65  Score=42.80  Aligned_cols=32  Identities=41%  Similarity=0.509  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .|+|||+|-+|.+.|..|.+.|.+|++++|.+
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~  149 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTP  149 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            89999999999999999999999999998873

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=86.90  E-value=0.73  Score=40.17  Aligned_cols=34  Identities=29%  Similarity=0.449  Sum_probs=31.1

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           61 ADVIVVGA-GVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        61 ~dVvIVGg-G~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      ..|+|.|| |-.|..++..|.++|++|+++.|++.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~   38 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChh
Confidence            46999999 99999999999999999999999753

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=86.67  E-value=0.73  Score=42.74  Aligned_cols=34  Identities=24%  Similarity=0.397  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      .-.++|+|+|-+|.++|..|++.|. +|+|+.|..
T Consensus       120 ~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~  154 (272)
T 3pwz_A          120 NRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDM  154 (272)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            3579999999999999999999997 899998863

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=86.65  E-value=0.56  Score=45.82  Aligned_cols=34  Identities=29%  Similarity=0.457  Sum_probs=30.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      .-.|+|+|+|+.|+.++..++..|. +|+++++++
T Consensus       194 g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~  228 (378)
T 3uko_A          194 GSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDS  228 (378)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence            3579999999999999999999999 899998764

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=86.61  E-value=0.46  Score=44.50  Aligned_cols=31  Identities=35%  Similarity=0.558  Sum_probs=28.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      -.|+|+|+|-+|.++|..|++.| +|+++.|+
T Consensus       129 k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~  159 (287)
T 1nvt_A          129 KNIVIYGAGGAARAVAFELAKDN-NIIIANRT  159 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CEEEEECchHHHHHHHHHHHHCC-CEEEEECC
Confidence            46999999999999999999999 99999876

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=86.59  E-value=0.51  Score=42.08  Aligned_cols=34  Identities=29%  Similarity=0.519  Sum_probs=31.1

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           61 ADVIVVGA-GVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        61 ~dVvIVGg-G~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      ..|+|.|| |..|..++..|.++|++|+++.|++.
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~   39 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPE   39 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGG
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcc
Confidence            47999996 99999999999999999999999854

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=86.56  E-value=0.8  Score=42.87  Aligned_cols=34  Identities=32%  Similarity=0.530  Sum_probs=31.0

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           61 ADVIVVGA-GVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        61 ~dVvIVGg-G~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      ++|+|.|| |-.|..++..|.++|++|+++-|++.
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~   35 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG   35 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            36999999 99999999999999999999998754

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=86.54  E-value=0.51  Score=44.70  Aligned_cols=33  Identities=30%  Similarity=0.497  Sum_probs=30.3

Q ss_pred             CCcEEEECCC-HHHHHHHHHHHHCCCcEEEEecC
Q 010623           60 DADVIVVGAG-VAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        60 ~~dVvIVGgG-~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      .-+|+|||+| ++|..+|..|.+.|.+|++++|.
T Consensus       177 gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~  210 (320)
T 1edz_A          177 GKKCIVINRSEIVGRPLAALLANDGATVYSVDVN  210 (320)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCc
Confidence            4689999999 67999999999999999999886

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=86.47  E-value=0.59  Score=45.32  Aligned_cols=33  Identities=27%  Similarity=0.224  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      -.|+|+|+|+.|+.++..++..|.+|+.+++++
T Consensus       181 ~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~  213 (360)
T 1piw_A          181 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSS  213 (360)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            479999999999999999999999999999764

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=86.44  E-value=0.61  Score=42.99  Aligned_cols=33  Identities=33%  Similarity=0.549  Sum_probs=30.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCc-EEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRR-VHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~-v~vvE~~~   93 (506)
                      ..|.|||+|-.|...|..|++.|++ |.++++++
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~   44 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE   44 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence            5799999999999999999999999 89998863

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=86.42  E-value=0.74  Score=42.93  Aligned_cols=34  Identities=24%  Similarity=0.444  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      .-.|+|+|+|-+|.++|..|++.|. +|+|+.|.+
T Consensus       126 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  160 (281)
T 3o8q_A          126 GATILLIGAGGAARGVLKPLLDQQPASITVTNRTF  160 (281)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSH
T ss_pred             CCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCH
Confidence            4579999999999999999999997 999998873

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=86.33  E-value=0.52  Score=46.59  Aligned_cols=33  Identities=42%  Similarity=0.623  Sum_probs=30.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERD   92 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~   92 (506)
                      .-.|+|||+|..|..+|..|...|. +|++++|.
T Consensus       167 g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~  200 (404)
T 1gpj_A          167 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT  200 (404)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             CCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            4579999999999999999999999 89999886

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=86.28  E-value=0.51  Score=50.39  Aligned_cols=33  Identities=24%  Similarity=0.417  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..|.|||+|..|...|..|++.|++|+++|+++
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  347 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE  347 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECCChhhHHHHHHHHhCCCEEEEEECCH
Confidence            469999999999999999999999999999885

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=85.83  E-value=0.67  Score=45.17  Aligned_cols=33  Identities=24%  Similarity=0.146  Sum_probs=29.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      -.|+|+|+|+.|+.++..++..|.+|+++++++
T Consensus       196 ~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~  228 (369)
T 1uuf_A          196 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE  228 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999998763

>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}

Probab=85.78  E-value=0.4  Score=46.25  Aligned_cols=36  Identities=19%  Similarity=0.171  Sum_probs=33.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      ....++|+|||..+.++|..++..|++|+|+|.++.
T Consensus       198 p~~~L~I~GaGhva~aLa~la~~lgf~V~v~D~R~~  233 (362)
T 3on5_A          198 PKERLIIFGAGPDVPPLVTFASNVGFYTVVTDWRPN  233 (362)
T ss_dssp             CCEEEEEECCSTTHHHHHHHHHHHTEEEEEEESCGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEECCCcc
Confidence            357899999999999999999999999999998754

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=85.77  E-value=0.71  Score=43.71  Aligned_cols=32  Identities=31%  Similarity=0.409  Sum_probs=29.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      .|.|||||..|.++|+.|+..|+ .++++|.+.
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~   33 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTP   33 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSST
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCCh
Confidence            48999999999999999999898 599999874

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=85.76  E-value=0.78  Score=42.88  Aligned_cols=32  Identities=28%  Similarity=0.412  Sum_probs=29.9

Q ss_pred             CcEEEEC-CCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           61 ADVIVVG-AGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        61 ~dVvIVG-gG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      -.|+|+| +|.+|.++|..|++.|.+|+++.|+
T Consensus       120 k~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~  152 (287)
T 1lu9_A          120 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRK  152 (287)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            4799999 8999999999999999999999886

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=85.60  E-value=0.69  Score=42.89  Aligned_cols=32  Identities=28%  Similarity=0.495  Sum_probs=29.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERD   92 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~   92 (506)
                      ..|+|+|+|-+|-++|..|++.|. +|+|+.|.
T Consensus       120 ~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt  152 (271)
T 1npy_A          120 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN  152 (271)
T ss_dssp             SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            579999999999999999999998 79999887

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=85.57  E-value=1.6  Score=43.11  Aligned_cols=33  Identities=12%  Similarity=0.430  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC---cEEEEecC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR---RVHVIERD   92 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~---~v~vvE~~   92 (506)
                      +..|+|.|||-+|..+|..|.+.|+   ++.++|+.
T Consensus       219 d~riV~~GAGaAGigia~ll~~~G~~~~~i~l~D~~  254 (487)
T 3nv9_A          219 ECRMVFIGAGSSNTTCLRLIVTAGADPKKIVMFDSK  254 (487)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEETT
T ss_pred             hcEEEEECCCHHHHHHHHHHHHcCCCcccEEEEecc
Confidence            4799999999999999999999998   89999987

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=85.57  E-value=0.62  Score=42.86  Aligned_cols=30  Identities=27%  Similarity=0.272  Sum_probs=27.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEec
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIER   91 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~   91 (506)
                      .|.|||+|-.|...|..|++.|++|+++++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence            589999999999999999999999999765

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=85.56  E-value=0.71  Score=44.90  Aligned_cols=33  Identities=24%  Similarity=0.277  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      -.|+|+|+|+.|+.++..++..|.+|+++++++
T Consensus       189 ~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~  221 (366)
T 1yqd_A          189 KHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSP  221 (366)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999998763

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=85.51  E-value=0.65  Score=45.93  Aligned_cols=34  Identities=38%  Similarity=0.465  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .-.|+|||.|..|..+|..|...|.+|+++|+++
T Consensus       247 GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp  280 (464)
T 3n58_A          247 GKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDP  280 (464)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4589999999999999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	506
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	2e-18
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	3e-17
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	9e-16
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	2e-12
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	1e-09
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	1e-08
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	2e-08
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	4e-08
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	7e-08
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	8e-08
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	9e-08
d1kdga1	360	c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain	1e-07
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	1e-07
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	1e-07
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	2e-07
d1gpea1	391	c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic	3e-07
d1cf3a1	385	c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper	4e-07
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	9e-07
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	2e-06
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	3e-06
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	3e-06
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	3e-06
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	4e-06
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	4e-06
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	5e-06
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	6e-06
d1ju2a1	351	c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {	7e-06
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	8e-06
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	1e-05
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	1e-05
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	1e-05
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	2e-05
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	2e-05
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	2e-05
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	3e-05
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	3e-05
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	3e-05
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	3e-05
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	4e-05
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	5e-05
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	5e-05
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	6e-05
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	7e-05
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	9e-05
d1neka2	330	c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase	9e-05
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	1e-04
d1kifa1	246	c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N	1e-04
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	1e-04
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	1e-04
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	2e-04
d2cula1	230	c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {T	3e-04
d1e5qa1	182	c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase	5e-04
d1jaya_	212	c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase	6e-04
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	7e-04
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	0.001
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	0.001
d1djqa2	156	c.3.1.1 (A:490-645) Trimethylamine dehydrogenase,	0.002
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	0.002
d1txga2	180	c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogen	0.003
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	0.003
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	0.003
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	0.003
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	0.004

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 83.5 bits (205), Expect = 2e-18
 Identities = 41/197 (20%), Positives = 69/197 (35%), Gaps = 6/197 (3%)

Query: 62  DVIVVGAGVAGAALANTLAKDGRRVHVIER--DLSEPDRIVGELLQPGGYLKLIELGLED 119
            V ++GAG +G  L   L K G    ++ER        RI   +L+ G    L E G++ 
Sbjct: 4   QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDR 63

Query: 120 CVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVR 179
            + + D     G  +   G R +I          V    +      + L E   +     
Sbjct: 64  RMAR-DGLVHEGVEIAFAGQRRRIDLKRLSGGKTV--TVYGQTEVTRDLMEAREACGATT 120

Query: 180 LEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSC 239
           + Q     L + +G    V ++ + GE L         CDG     R+S+   ++     
Sbjct: 121 VYQAAEVRLHDLQGERPYVTFE-RDGERLRLDCDYIAGCDGFHGISRQSIPAERMQHGRL 179

Query: 240 FVGLVLENCNLPFENHG 256
           F+     +   P    G
Sbjct: 180 FLAGDAAHIVPPTGAKG 196

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 80.2 bits (196), Expect = 3e-17
 Identities = 42/217 (19%), Positives = 70/217 (32%), Gaps = 14/217 (6%)

Query: 58  PFDADVIVVGAGVAGAALANTLAKDG-RRVHVIERDLSEPDRIVGELLQPGGYLKLIELG 116
           P D  +++ GAG+ G + A  L + G  +V ++E         VG  +QP     L ELG
Sbjct: 1   PID--ILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELG 58

Query: 117 LEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREK-AASL 175
           L   +            + + G          +  +       H G     L       L
Sbjct: 59  LGPALAATAIPTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERL 118

Query: 176 PNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVD 235
               +  G     +EE+     +  +   G+     A + +  DG  S +R  L   +  
Sbjct: 119 GQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGADGIHSAVRAHLHPDQRP 178

Query: 236 VPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPIS 272
                         LP    G + L   +  L YP+ 
Sbjct: 179 ----------LRDPLPHWGRGRITLLGDAAHLMYPMG 205

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 76.7 bits (187), Expect = 9e-16
 Identities = 61/401 (15%), Positives = 111/401 (27%), Gaps = 66/401 (16%)

Query: 62  DVIVVGAGVAGAALANTLA-----KDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELG 116
           DV++VGAG AG   A  L+     K   +V +I++  ++      + LQ      L  LG
Sbjct: 9   DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLG 68

Query: 117 LEDCVEQIDAQRVFGYALFKDGNRTQISYP-----LEKFHSDVAGRGFHNGRFVQRLREK 171
           L D +   +A  +   AL+       I             S       H GR  +R+ + 
Sbjct: 69  LADKILS-EANDMSTIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDS 127

Query: 172 AASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCN 231
            A + + R++                                 +   D     +  +L  
Sbjct: 128 IAEISDTRIKVERPL-------------------IPEKMEIDSSKAEDPEAYPVTMTLRY 168

Query: 232 PKVDVPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSIS 291
              D  +                                                   + 
Sbjct: 169 MSEDESTPLQ-----------------------FGHKTENGLFRSNLQTQEEEDANYRLP 205

Query: 292 NGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLM-GDAFN 350
            G+ A  ++TV    +                 +T+    +    +     + + GDA +
Sbjct: 206 EGKEAGEIETVHCKYVIGCDGGHSW------VRRTLGFEMIVTEKFSKDERVFIAGDACH 259

Query: 351 MRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGA 410
              P  G GM  ++ D   L   L  +        +   L+++   R+P A  +      
Sbjct: 260 THSPKAGQGMNTSMMDTYNLGWKLGLVLTGRAKRDI---LKTYEEERQPFAQALIDFDHQ 316

Query: 411 LYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGL 451
             ++FS  P  A+    +           F  G     SG 
Sbjct: 317 FSRLFSGRP--AKDVADEMGVSMDVFKEAFVKG-NEFASGT 354

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 66.4 bits (161), Expect = 2e-12
 Identities = 37/219 (16%), Positives = 69/219 (31%), Gaps = 19/219 (8%)

Query: 60  DADVIVVGAGVAGAALANTLAK------DGRRVHVIERDLSEPDRIV-GELLQPGGYLKL 112
           +ADV++VGAG AG + A  L +         RV ++E+        + G  L P  + +L
Sbjct: 32  EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEEL 91

Query: 113 IELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKA 172
                E             + +  +  R  +        ++        G  V  + E+A
Sbjct: 92  FPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQA 151

Query: 173 ASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAG------------EELTAYAPLTIVCDG 220
            +L            +L  +            G              L  +A +TI  +G
Sbjct: 152 EALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEG 211

Query: 221 CFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVV 259
           C  +L + L        +C      ++        G ++
Sbjct: 212 CHGHLAKQLYKKFDLRANCEPQGGFQSIPKLTFPGGLLI 250

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 56.7 bits (135), Expect = 1e-09
 Identities = 31/166 (18%), Positives = 45/166 (27%), Gaps = 17/166 (10%)

Query: 58  PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI-VGELLQPGGYLKLIELG 116
           P    + VVG  ++G   A  L   G  V V ER          G ++QP     L+E G
Sbjct: 2   PTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQG 61

Query: 117 LEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLP 176
           +E     + +     Y     G R                  +    +            
Sbjct: 62  VELDSISVPSSS-MEYVDALTGERVGSVPA-----------DWRFTSYDSIYGGLYELFG 109

Query: 177 NVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCF 222
             R         L +      VQ +   G +  A     I  DG  
Sbjct: 110 PERYHTSKCLVGLSQDSE--TVQMRFSDGTKAEAN--WVIGADGGA 151

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 53.7 bits (128), Expect = 1e-08
 Identities = 32/168 (19%), Positives = 52/168 (30%), Gaps = 11/168 (6%)

Query: 62  DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCV 121
           + I++GAG AG   A  LAK G+ V V +       +I   L+  GG+     L +    
Sbjct: 6   ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKI---LMSGGGFCNFTNLEVTPAH 62

Query: 122 EQIDAQRVFGYALFKDGNRTQIS------YPLEKFHSDVAGRGFHNGRFVQRLREKAASL 175
                      AL +  N   IS          +             + V+ L+ +    
Sbjct: 63  YLSQNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKY 122

Query: 176 PNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFS 223
               L +  V+ +   +   K          +        IV  G  S
Sbjct: 123 GAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKN--LIVATGGLS 168

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 53.1 bits (126), Expect = 2e-08
 Identities = 35/175 (20%), Positives = 60/175 (34%), Gaps = 18/175 (10%)

Query: 62  DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLI--ELGLED 119
           DVIV+G G +G   A   A++G  V ++++     +++  +L   GG    +   L L++
Sbjct: 4   DVIVIGGGPSGLMAAIGAAEEGANVLLLDKG----NKLGRKLAISGGGRCNVTNRLPLDE 59

Query: 120 CVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSD--------VAGRGFHNGRFVQRLREK 171
            V+ I     F Y+ F   N   I    E             +          V  L  +
Sbjct: 60  IVKHIPGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTR 119

Query: 172 AASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLR 226
              L         V ++  E G  K V  +T             ++  G  S  +
Sbjct: 120 LKDLGVKIRTNTPVETIEYENGQTKAVILQTGE----VLETNHVVIAVGGKSVPQ 170

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 52.5 bits (124), Expect = 4e-08
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92
            + +V+G G+ G+A+A  LAK+ +   + E  
Sbjct: 4  HYEAVVIGGGIIGSAIAYYLAKENKNTALFESG 36

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 51.9 bits (123), Expect = 7e-08
 Identities = 8/30 (26%), Positives = 14/30 (46%)

Query: 62 DVIVVGAGVAGAALANTLAKDGRRVHVIER 91
            +V+G G   A  A  L + G +  ++E 
Sbjct: 4  PAVVIGTGYGAAVSALRLGEAGVQTLMLEM 33

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.8 bits (122), Expect = 8e-08
 Identities = 10/30 (33%), Positives = 20/30 (66%)

Query: 62 DVIVVGAGVAGAALANTLAKDGRRVHVIER 91
          DVIV+G G+    L+  ++ +G++V  ++R
Sbjct: 8  DVIVLGTGLTECILSGIMSVNGKKVLHMDR 37

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 51.8 bits (123), Expect = 9e-08
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 62 DVIVVGAGVAGAALANTLAKDGRRVHVIER 91
            +V+G+G  GA  A  L + G    ++E 
Sbjct: 9  PALVIGSGYGGAVAALRLTQAGIPTQIVEM 38

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score = 51.6 bits (122), Expect = 1e-07
 Identities = 13/30 (43%), Positives = 21/30 (70%)

Query: 62 DVIVVGAGVAGAALANTLAKDGRRVHVIER 91
          D I+VGAG  G   A+ L++ G++V ++ER
Sbjct: 4  DYIIVGAGPGGIIAADRLSEAGKKVLLLER 33

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 1e-07
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 62 DVIVVGAGVAGAALANTLAKDGRRVHVIER 91
          DVIV+G G+    L+  L+ DG++V  I++
Sbjct: 7  DVIVLGTGITECILSGLLSVDGKKVLHIDK 36

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 50.5 bits (119), Expect = 1e-07
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERD 92
          DVIVVGAG  G A    LAK G +  +++  
Sbjct: 5  DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAF 35

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 51.1 bits (121), Expect = 2e-07
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 62 DVIVVGAGVAGAALANTLAKDGRRVHVIER 91
          DV++VG+G  G   A  L   G +V + + 
Sbjct: 6  DVVIVGSGPIGCTYARELVGAGYKVAMFDI 35

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score = 50.3 bits (119), Expect = 3e-07
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 62  DVIVVGAGVAGAALANTLAKDGR-RVHVIERDLSEPDRIVGELLQ-PGGYLKLI 113
           D I+ G G+ G  +A  L ++ + +V VIE+   E +   G +++ P  Y ++ 
Sbjct: 26  DYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESND--GAIIEDPNAYGQIF 77

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score = 49.9 bits (118), Expect = 4e-07
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 62  DVIVVGAGVAGAALANTLAKDGR-RVHVIERDLSEPDRIVGELLQPGGYLKL 112
           D I+ G G+ G   A  L ++    V VIE    E DR    +     Y  +
Sbjct: 19  DYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGP-IIEDLNAYGDI 69

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 48.2 bits (113), Expect = 9e-07
 Identities = 9/33 (27%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 61 ADVIVVGAGVAGAALANTLAKDG-RRVHVIERD 92
            ++++GAG+ G  LA+ L   G   + V+++ 
Sbjct: 2  PRIVIIGAGIVGTNLADELVTRGWNNITVLDQG 34

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 47.1 bits (111), Expect = 2e-06
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERD 92
          D I+VG+G+ GA  AN L K  ++V VIE+ 
Sbjct: 3  DYIIVGSGLFGAVCANELKKLNKKVLVIEKR 33

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 46.9 bits (110), Expect = 3e-06
 Identities = 13/33 (39%), Positives = 21/33 (63%)

Query: 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92
            DV+VVG+G AG + A +    G +V +IE++
Sbjct: 16 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKE 48

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 46.9 bits (110), Expect = 3e-06
 Identities = 13/50 (26%), Positives = 26/50 (52%)

Query: 43 DSLRKTPTTALNGECPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92
          D+ +     A+        DV+++G+G AG A A +    G +V ++E++
Sbjct: 6  DADKAAQDKAIAAGVKETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKE 55

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 4/40 (10%)

Query: 62  DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVG 101
           DV+VVG G++G A A  L   G  V V+E      DR+ G
Sbjct: 1   DVVVVGGGISGMAAAKLLHDSGLNVVVLEAR----DRVGG 36

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 46.5 bits (109), Expect = 4e-06
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92
            V+VVGAG AG   +    K G  V ++++ 
Sbjct: 20 TQVLVVGAGSAGFNASLAAKKAGANVILVDKA 51

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 46.3 bits (108), Expect = 4e-06
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 4/40 (10%)

Query: 62  DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVG 101
           +V VVG G++G A+A+ L   G    ++E       R+ G
Sbjct: 2   NVAVVGGGISGLAVAHHLRSRGTDAVLLESS----ARLGG 37

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 45.8 bits (107), Expect = 5e-06
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERD 92
           V+V+G+GV G + A  LA+ G  VH++ RD
Sbjct: 8  RVVVLGSGVIGLSSALILARKGYSVHILARD 38

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 45.6 bits (107), Expect = 6e-06
 Identities = 32/141 (22%), Positives = 55/141 (39%), Gaps = 25/141 (17%)

Query: 60  DADVIVVGAGVAGAALANTLAKD-GRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLE 118
           + DV+VVGAG AG + A  ++K+   +V +IE+ +S           PGG   L      
Sbjct: 33  ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS-----------PGGGAWLGGQLFS 81

Query: 119 DCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNV 178
             + +  A            +   ++Y  +  +  V     H   F   +  K  + PNV
Sbjct: 82  AMIVRKPAHLFL--------DEIGVAYDEQDTYVVVK----HAALFTSTIMSKLLARPNV 129

Query: 179 RLEQGT-VTSLLEEKGTIKGV 198
           +L        L+ +   + GV
Sbjct: 130 KLFNAVAAEDLIVKGNRVGGV 150

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

 Score = 45.7 bits (107), Expect = 7e-06
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 62  DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIE 114
           D ++VG G +G  LA TL++   +V V+ER           +L   G++  ++
Sbjct: 28  DYVIVGGGTSGCPLAATLSEK-YKVLVLER--GSLPTAYPNVLTADGFVYNLQ 77

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 44.9 bits (105), Expect = 8e-06
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 55 GECPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92
          G    + DV+V+G G  G + A   A +G +V ++ER 
Sbjct: 1  GSADAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERY 38

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERD 92
           V++VGAG+AG + A  LA  G +V V+E  
Sbjct: 32 HVVIVGAGMAGLSAAYVLAGAGHQVTVLEAS 62

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (104), Expect = 1e-05
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)

Query: 61  ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVG 101
             VI++G+GV+G A A  L   G  V ++E      DR+ G
Sbjct: 6   GKVIIIGSGVSGLAAARQLQSFGMDVTLLEAR----DRVGG 42

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 44.6 bits (104), Expect = 1e-05
 Identities = 29/203 (14%), Positives = 55/203 (27%), Gaps = 29/203 (14%)

Query: 59  FDADVIVVGAGVAGAALANTLAK--DGRRVHVIERDLSE--------------------P 96
           F AD+ +VGAG AG   A   A+     ++ +I +                         
Sbjct: 4   FQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSF 63

Query: 97  DRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSD--- 153
           +    + +  G +L   ++                        R   S  + +F      
Sbjct: 64  EYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIE 123

Query: 154 ---VAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKG-VQYKTKAGEELT 209
               A             +         R ++  V  +L + G ++G V      G  + 
Sbjct: 124 RTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQ 183

Query: 210 AYAPLTIVCDGCFSNLRRSLCNP 232
             A   ++  G    + R   N 
Sbjct: 184 IRANAVVMATGGAGRVYRYNTNG 206

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIER 91
          +D D+I++G G  G A A   AK  ++V V++ 
Sbjct: 2  YDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDF 34

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 6/34 (17%), Positives = 13/34 (38%)

Query: 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92
              ++++G G  G   A    + G    ++E  
Sbjct: 4  IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ 37

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 43.8 bits (102), Expect = 2e-05
 Identities = 20/114 (17%), Positives = 31/114 (27%), Gaps = 6/114 (5%)

Query: 58  PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGL 117
           P + D I +G G AG   +  L   G R  +++R              P           
Sbjct: 40  PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLF------S 93

Query: 118 EDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREK 171
           +   E + A+   G   F D     +              G H     Q   + 
Sbjct: 94  DCAAELMLARTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQL 147

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 44.0 bits (103), Expect = 3e-05
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 4/39 (10%)

Query: 63  VIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVG 101
           +++VGAG +GA +   LA+ G +VH+I++     D I G
Sbjct: 5   ILIVGAGFSGAVIGRQLAEKGHQVHIIDQR----DHIGG 39

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 43.0 bits (100), Expect = 3e-05
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERD 92
          D I +G G  G A  N  A  G++  +IE  
Sbjct: 4  DYIAIGGGSGGIASINRAAMYGQKCALIEAK 34

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 43.3 bits (101), Expect = 3e-05
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92
           + + +VVGAG  G   A   A+ G++V ++E+ 
Sbjct: 2  IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG 35

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 43.7 bits (101), Expect = 3e-05
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 63 VIVVGAGVAGAALANTLAKDGRRVHVIERD 92
          V V+GAGV+G A A  L   G  V V E +
Sbjct: 4  VAVIGAGVSGLAAAYKLKIHGLNVTVFEAE 33

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 42.7 bits (99), Expect = 4e-05
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERD 92
          D+IV+G G  G A A   A+   +V ++E+ 
Sbjct: 3  DLIVIGGGSGGMAAARRAARHNAKVALVEKS 33

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 43.2 bits (100), Expect = 5e-05
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERD 92
          D +V+G G+AG   A    + G    V+   
Sbjct: 7  DSLVIGGGLAGLRAAVATQQKGLSTIVLSLI 37

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 5e-05
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERD 92
          D +V+G G  G A A   A+ G R  V+E  
Sbjct: 5  DYLVIGGGSGGLASARRAAELGARAAVVESH 35

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 42.5 bits (99), Expect = 6e-05
 Identities = 17/36 (47%), Positives = 22/36 (61%)

Query: 56 ECPFDADVIVVGAGVAGAALANTLAKDGRRVHVIER 91
          + P + DV+VVGAG +G      L + GR VHVIE 
Sbjct: 3  QPPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIET 38

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 42.6 bits (98), Expect = 7e-05
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 62  DVIVVGAGVAGAALANTLAKDG-RRVHVIERDLSEPDRIVGELLQPGGYLKLIELG 116
            VIVVGAG++G + A  L++ G   + ++E      D I G + +       +ELG
Sbjct: 2   RVIVVGAGMSGISAAKRLSEAGITDLLILEAT----DHIGGRMHKTNFAGINVELG 53

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 41.6 bits (96), Expect = 9e-05
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDR 98
          DVIV+GAG  G   A   A+ G +  +IE+   +  +
Sbjct: 5  DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGK 41

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score = 42.2 bits (98), Expect = 9e-05
 Identities = 9/31 (29%), Positives = 18/31 (58%)

Query: 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERD 92
          D +V+GAG AG   A  +++ G+   ++ + 
Sbjct: 9  DAVVIGAGGAGMRAALQISQSGQTCALLSKV 39

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94
          DV++VG+G AGAA A   A+ G R  ++     
Sbjct: 3  DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFG 35

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 63 VIVVGAGVAGAALANTLAKDGRRVHVIER 91
          V+V+GAGV G + A  + +    V     
Sbjct: 3  VVVIGAGVIGLSTALCIHERYHSVLQPLD 31

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (96), Expect = 1e-04
 Identities = 34/201 (16%), Positives = 57/201 (28%), Gaps = 18/201 (8%)

Query: 62  DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCV 121
           DV+++G G AG   A   A+ G     +E+      ++ G  L  G       L      
Sbjct: 7   DVVIIGGGPAGYVAAIKAAQLGFNTACVEKR----GKLGGTCLNVGCIPSKALLNNSHLF 62

Query: 122 EQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLE 181
            Q          +  +G+        +K   D   +       + +          V   
Sbjct: 63  HQ-MHTEAQKRGIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFK-------KNKVTYY 114

Query: 182 QGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFV 241
           +G  +   E K  +  V       +E        I+              P V       
Sbjct: 115 KGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVT------PFVGRRPYIA 168

Query: 242 GLVLENCNLPFENHGHVVLAD 262
           GL  E   L  +  G +V+ D
Sbjct: 169 GLGAEKIGLEVDKRGRLVIDD 189

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92
          + DV+++G G  G   A   A+ G +   IE+ 
Sbjct: 3  ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKR 35

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIER 91
          A V+V+GAG+A  +    L + G +  +   
Sbjct: 4  APVVVLGAGLASVSFVAELRQAGYQGLITVV 34

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} Length = 230

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

 Score = 40.0 bits (93), Expect = 3e-04
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 62  DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGY 109
            V++VGAG +GA  A  LA+ G RV ++ + L   D ++   L P   
Sbjct: 4   QVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL---DAVMMPFLPPKPP 48

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

 Score = 38.9 bits (89), Expect = 5e-04
 Identities = 9/40 (22%), Positives = 17/40 (42%)

Query: 63  VIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGE 102
           V+++G+G       + L   G +V V  R L    ++   
Sbjct: 5   VLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAG 44

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 212

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 38.9 bits (89), Expect = 6e-04
 Identities = 12/46 (26%), Positives = 18/46 (39%)

Query: 63  VIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGG 108
            ++ G G  G  LA  LA  G  + V  R   + +    E  +  G
Sbjct: 4   ALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAG 49

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 38.6 bits (88), Expect = 7e-04
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERD 92
          +V++VG G+AG  +A  L   G   ++    
Sbjct: 5  NVVIVGTGLAGVEVAFGLRASGWEGNIRLVG 35

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 4/37 (10%)

Query: 60 DADVIVVGAGVAGAALANTLAKD----GRRVHVIERD 92
          + D++++G G +G   A   A      G +V ++E+ 
Sbjct: 21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKA 57

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 38.7 bits (89), Expect = 0.001
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92
           DV+++G+G AG +LA  LA    +V V+ + 
Sbjct: 8  CDVLIIGSGAAGLSLALRLADQH-QVIVLSKG 38

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 156

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 36.8 bits (84), Expect = 0.002
 Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 48 TPTTALNGECPFDADVIVV--GAGVAGAALANTLAKDGRRVHVIERD 92
          TP   ++G+      V+++         +LA  LA  G  V ++   
Sbjct: 27 TPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGV 73

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 63 VIVVGAGVAGAALANTLAKDG-RRVHVIERD 92
          + ++GAG A  + A+ LA+ G   + + E+ 
Sbjct: 7  IALLGAGPASISCASFLARLGYSDITIFEKQ 37

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 180

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 63 VIVVGAGVAGAALANTLAKDGRRVHVIERDLSE 95
          V ++GAG  G+AL+  L  +G  V +   +   
Sbjct: 3  VSILGAGAMGSALSVPLVDNGNEVRIWGTEFDT 35

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (86), Expect = 0.003
 Identities = 34/147 (23%), Positives = 52/147 (35%), Gaps = 25/147 (17%)

Query: 60  DADVIVVGAGVAGAALANTLAKD--GRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGL 117
            +DVI+VGAG +G + A  +AK+    +V +IE             + PGG   L     
Sbjct: 50  VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESS-----------VAPGGGSWLGGQLF 98

Query: 118 EDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPN 177
              V +  A               +I Y  E  +  V     H   F+  +  K   LPN
Sbjct: 99  SAMVMRKPAHLFL--------QELEIPYEDEGDYVVVK----HAALFISTVLSKVLQLPN 146

Query: 178 VRLEQGTVTSLLEEKGTIKGVQYKTKA 204
           V+L   T    L  +   +  +     
Sbjct: 147 VKLFNATCVEDLVTRPPTEKGEVTVAG 173

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 22/208 (10%), Positives = 58/208 (27%), Gaps = 12/208 (5%)

Query: 63  VIVVGAGVAGAALANTLAKDG--RRVHVIERD-----LSEPDRIVGELLQPGGYLKLIEL 115
           + ++GAG +G   A  L  +    +V + ER      +      +   L       ++  
Sbjct: 7   IAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTT 66

Query: 116 GLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASL 175
                   +       Y   +     ++    ++       +  H     +  R  A  L
Sbjct: 67  EPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPL 126

Query: 176 PNVRLEQGTVTSLLEEKGTIKG-VQYKTKAGEELTAYAPLTIVCDGCFSNLR----RSLC 230
                    V  + ++ G+     +                 +C+G +         S+ 
Sbjct: 127 LPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYTGYLYSVP 186

Query: 231 NPKVDVPSCFVGLVLENCNLPFENHGHV 258
            P +         ++++ +     + H+
Sbjct: 187 FPSLAKLKSPETKLIDDGSHVHNVYQHI 214

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 36.4 bits (83), Expect = 0.003
 Identities = 7/33 (21%), Positives = 15/33 (45%)

Query: 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94
           + +VG+G A    A   A+   +  + E  ++
Sbjct: 7  RLCIVGSGPAAHTAAIYAARAELKPLLFEGWMA 39

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 36.4 bits (82), Expect = 0.004
 Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 2/32 (6%)

Query: 63 VIVVGAGVAGAALANTLAKDGR--RVHVIERD 92
          VIV+G+   G      L        +   E+ 
Sbjct: 3  VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKG 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	506
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	99.98
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	99.97
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	99.95
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.88
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	99.78
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.59
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.55
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.51
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.48
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.48
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.45
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.43
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.43
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.33
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.32
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.28
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.23
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.21
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.19
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	99.18
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	99.14
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.12
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.11
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.07
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.02
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.0
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	98.97
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.97
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.94
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.93
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.88
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.88
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.85
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.84
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.84
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.82
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.81
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.78
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.76
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.76
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.76
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.74
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.74
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.73
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.7
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.69
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.68
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.67
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.65
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.61
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.59
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.59
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.57
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.57
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.53
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.53
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	98.5
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.5
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	98.5
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.5
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.49
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.48
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.46
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.43
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.4
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	98.39
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.39
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.37
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.37
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.37
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.36
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	98.36
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.33
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.32
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.26
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.25
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.24
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.19
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.19
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.18
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.11
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	98.07
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.06
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.05
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.04
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	97.86
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	97.8
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.64
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.63
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	97.62
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	97.6
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.47
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	97.43
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	97.42
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.12
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.75
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.72
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.66
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.51
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.32
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.31
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.09
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.95
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.77
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	95.72
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	95.44
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	95.37
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	95.25
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.13
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.05
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	94.98
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.9
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	94.8
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	94.76
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	94.55
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.55
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	94.52
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	94.49
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.39
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	94.32
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	94.3
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	94.23
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	94.08
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	93.96
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	93.82
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	93.69
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	93.59
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	93.36
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	93.35
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	93.34
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	93.25
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	93.24
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	93.18
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	93.09
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	93.07
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	93.01
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	92.71
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.64
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	92.44
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	92.42
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	92.32
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	92.3
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	92.25
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	92.13
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	92.12
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	91.9
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	91.88
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	91.86
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	91.69
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	91.45
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	91.39
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	91.33
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	90.91
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	90.81
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	90.25
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	90.16
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	89.73
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	89.69
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	89.43
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	89.21
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	89.2
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	88.35
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	88.32
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	87.95
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	87.55
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	87.48
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	87.47
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	87.25
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	87.18
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	87.11
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	86.8
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	86.65
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	85.97
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	85.85
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	85.68
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	85.61
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	85.51
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	85.41
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	85.09
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	84.77
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	84.45
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	83.7
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	82.85
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	82.64
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	81.92
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	81.79
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	81.53
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	81.03
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	80.92
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	80.78

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.98  E-value=1.3e-31  Score=255.79  Aligned_cols=253  Identities=21%  Similarity=0.253  Sum_probs=183.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC-
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD-  137 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~-  137 (506)
                      ++||+||||||+||++|+.|+++|+ +|+|+||++......++..+.+++++.|+++|+.+.+.+...... ....+.. 
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~   79 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTH-ELRYIDQS   79 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEEC-EEEEECTT
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhhhcccc-cceeEcCC
Confidence            3799999999999999999999997 999999999888888889999999999999999998877543332 2233333 


Q ss_pred             CceeeeecCCcCC-CCCcccccccchHHHHHHHHHH-HcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCe
Q 010623          138 GNRTQISYPLEKF-HSDVAGRGFHNGRFVQRLREKA-ASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPL  214 (506)
Q Consensus       138 ~~~~~~~~~~~~~-~~~~~~~~i~~~~l~~~L~~~~-~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~  214 (506)
                      +... ..++.... ..........+......+.+.+ ....++.+..+ +++.+.++++++. +++.+.+++..++++|+
T Consensus        80 g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~-v~~~~g~~~~~~~~ad~  157 (288)
T d3c96a1          80 GATV-WSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGRVL-IGARDGHGKPQALGADV  157 (288)
T ss_dssp             SCEE-EEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTEEE-EEEEETTSCEEEEEESE
T ss_pred             CCEE-EeccccccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeecCCcEE-EEEEcCCCCeEEEeece
Confidence            3322 22221111 1111122233333333333332 22235566666 4888988888765 77777777777899999


Q ss_pred             EEeecCCcccchhhccCCCCCCccceeeEEEeccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCCCCCCCchH
Q 010623          215 TIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGE  294 (506)
Q Consensus       215 vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  294 (506)
                      ||+|||.+|.+|+..........                                                         
T Consensus       158 vi~ADG~~S~vr~~~~~~~~~~~---------------------------------------------------------  180 (288)
T d3c96a1         158 LVGADGIHSAVRAHLHPDQRPLR---------------------------------------------------------  180 (288)
T ss_dssp             EEECCCTTCHHHHHHCTTCCCCC---------------------------------------------------------
T ss_pred             eeccCCccceeeeeecccccccc---------------------------------------------------------
Confidence            99999999999876533211000                                                         


Q ss_pred             HHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHHHHh
Q 010623          295 MANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLL  374 (506)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L  374 (506)
                                                           .....+..++++++|||+|.++|+.|||+|++|+|+..|++.|
T Consensus       181 -------------------------------------~~~~~~~~~~~~~~gda~h~~~p~~g~G~~~ai~d~~~l~~~l  223 (288)
T d3c96a1         181 -------------------------------------DPLPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAAL  223 (288)
T ss_dssp             -------------------------------------CCCSCCCBTTEEECTHHHHCCCSSTTCTHHHHHHHHHHHHHHH
T ss_pred             -------------------------------------ccccccccCcceecccccceeCCccccchhhhhhhHHHHHHHH
Confidence                                                 0012356689999999999999999999999999999999999


Q ss_pred             hhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Q 010623          375 RHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVF  415 (506)
Q Consensus       375 ~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~  415 (506)
                      ...      .+.+++|+.|+++|+|++..++..++.+.+..
T Consensus       224 ~~~------~~~~~al~~y~~~r~pr~~~~~~~~~~~~~~~  258 (288)
T d3c96a1         224 ARN------ADVAAALREYEEARRPTANKIILANREREKEE  258 (288)
T ss_dssp             HHC------SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            863      23568999999999999999988887665554

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=99.97  E-value=3.1e-32  Score=269.22  Aligned_cols=300  Identities=18%  Similarity=0.154  Sum_probs=180.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHH-----HCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceE
Q 010623           59 FDADVIVVGAGVAGAALANTLA-----KDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYA  133 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La-----~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  133 (506)
                      ..|||+||||||+||++|+.|+     ++|++|+|+||++.+...+++..++++++++|+++|+++.+..... ......
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~~~r~~~l~~~~~~~L~~lGl~~~i~~~~~-~~~~~~   84 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLADKILSEAN-DMSTIA   84 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHHHHHTTCB-CCCEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCcCCeEEEECHHHHHHHHHcCChHHHHhhcC-CcceeE
Confidence            3599999999999999999997     5799999999999888889999999999999999999998877543 333333


Q ss_pred             EEEC-C--ceeeeec-CC-cCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEE
Q 010623          134 LFKD-G--NRTQISY-PL-EKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEEL  208 (506)
Q Consensus       134 ~~~~-~--~~~~~~~-~~-~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~  208 (506)
                      ++.. .  ....... +. ...........+++..++..|.+.+.+.+.......                  .. ....
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------------------~~-~~~~  145 (360)
T d1pn0a1          85 LYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVE------------------RP-LIPE  145 (360)
T ss_dssp             EEEECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEE------------------CS-EEEE
T ss_pred             EEecccCCcccccccccccccccccchheeecHHHHHHHHHHHHHhccccceeee------------------Ee-cccc
Confidence            3322 1  1111111 10 111112233456788888888887765422211100                  00 0012


Q ss_pred             EEEcCeEEeecCCcccchhhccCCCCCCccceeeEEEeccCCCCCCeeEEEe--c-CCCcEEEEecCCC--eEEEEE---
Q 010623          209 TAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVL--A-DPSPILFYPISSN--EVRCLV---  280 (506)
Q Consensus       209 ~i~a~~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~p~~~~--~~~~~~---  280 (506)
                      ++.+|.+++|||.+|.+|.................    ...+. ......+  . +....+..|....  ......   
T Consensus       146 ~~~~d~~~~~dg~~s~v~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (360)
T d1pn0a1         146 KMEIDSSKAEDPEAYPVTMTLRYMSEDESTPLQFG----HKTEN-GLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKY  220 (360)
T ss_dssp             EEEECGGGTTCTTCCCEEEEEEECCGGGSCCCTTC----CCCCS-SSCCCHHHHHHHHHTSCCCSTTCCTTCEEEEEEEE
T ss_pred             eEEeeEEEEeecCCcceEEEEEEeecccccceeee----eecCC-CceEEeeecCCcccceeecCcccchhhHHHHHHHh
Confidence            45699999999999999875543221111000000    00000 0000000  0 0000011111110  000000   


Q ss_pred             EecCCCCCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCC-CCcEEEEccCCCCCCCCcchh
Q 010623          281 DIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYP-TPGALLMGDAFNMRHPLTGGG  359 (506)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~rv~LvGDAAh~~~P~~GqG  359 (506)
                      ......                      ......          ...+.......+|. .|||+|+|||||.++|++|||
T Consensus       221 ~~~~~~----------------------~~~~~~----------~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG  268 (360)
T d1pn0a1         221 VIGCDG----------------------GHSWVR----------RTLGFEMIVTEKFSKDERVFIAGDACHTHSPKAGQG  268 (360)
T ss_dssp             EEECCC----------------------TTCHHH----------HHHTCCCEECSCSEETTTEEECGGGTEECCSTTCCH
T ss_pred             hcCccc----------------------ccchhh----------cccccccchhhheeecCcEEEccCcccccccccCCC
Confidence            000000                      000000          00111222345554 589999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCC
Q 010623          360 MTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSAS  418 (506)
Q Consensus       360 ~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~  418 (506)
                      +|+||+||.+|+++|..+.+.   ...+++|++|+++|++.+..++..++.+.+++...
T Consensus       269 ~n~al~Da~~La~~l~~~~~~---~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~  324 (360)
T d1pn0a1         269 MNTSMMDTYNLGWKLGLVLTG---RAKRDILKTYEEERQPFAQALIDFDHQFSRLFSGR  324 (360)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT---CBCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             CcccHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            999999999999999876432   22357899999999999999999999999988754

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=3.5e-28  Score=233.18  Aligned_cols=265  Identities=20%  Similarity=0.230  Sum_probs=194.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC--CcccccccccchHHHHHHhCchhHHhhcccceecceEEEE
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP--DRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFK  136 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~--~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  136 (506)
                      +++||+||||||+||++|+.|+++|++|+|+||.+...  ...++..++++++++|+++|+++.+.+.. .+..++.++.
T Consensus         1 mk~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~-~~~~~~~~~~   79 (292)
T d1k0ia1           1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDG-LVHEGVEIAF   79 (292)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHC-EEESCEEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhc-ccccceEEEe
Confidence            46899999999999999999999999999999986422  34456779999999999999999987743 3556666665


Q ss_pred             CCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceE-EEEEeeCCeEEEEEEEeCCccEEEEEcCeE
Q 010623          137 DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTV-TSLLEEKGTIKGVQYKTKAGEELTAYAPLT  215 (506)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v-~~~~~~~~~v~~v~v~~~~G~~~~i~a~~v  215 (506)
                      ..........  ........+.+.|..+.+.|.+.+.+.++..++.+++ ..+.++++++. |++. .+|++.+++||+|
T Consensus        80 ~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~-~~g~~~~i~a~~v  155 (292)
T d1k0ia1          80 AGQRRRIDLK--RLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPY-VTFE-RDGERLRLDCDYI  155 (292)
T ss_dssp             TTEEEEECHH--HHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCE-EEEE-ETTEEEEEECSEE
T ss_pred             cccccccccc--cccccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCceE-EEEe-cCCcEEEEEeCEE
Confidence            5443332221  1122334567889999999999999988877777764 44445555433 4443 4677678999999


Q ss_pred             EeecCCcccchhhccCCCCCCccceeeEEEeccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCCCCCCCchHH
Q 010623          216 IVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEM  295 (506)
Q Consensus       216 V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  295 (506)
                      |+|||.+|.+|+++.                                                                 
T Consensus       156 VgADG~~S~vR~~i~-----------------------------------------------------------------  170 (292)
T d1k0ia1         156 AGCDGFHGISRQSIP-----------------------------------------------------------------  170 (292)
T ss_dssp             EECCCTTCSTGGGSC-----------------------------------------------------------------
T ss_pred             EECCCCCCcccceee-----------------------------------------------------------------
Confidence            999999999998631                                                                 


Q ss_pred             HHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHHHHhh
Q 010623          296 ANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLR  375 (506)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~  375 (506)
                                                            ...+..++..++||++|.++|..|+|+|.++.|+.+|++++.
T Consensus       171 --------------------------------------~~~~~~~~~~~~~~~~~~~~p~~~~~~n~~~~d~~~l~~~~~  212 (292)
T d1k0ia1         171 --------------------------------------AERMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLL  212 (292)
T ss_dssp             --------------------------------------GGGSEETTEEECGGGTEECCGGGTCHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------eccccccccccceeeeeecCCcccccccccccccccccccee
Confidence                                                  012234677899999999999999999999999999999988


Q ss_pred             hcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCC--CchhHHHHHHHHHHHHh
Q 010623          376 HLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSAS--PDEARKEMRQACFDYLS  435 (506)
Q Consensus       376 ~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~--~~~~~~~~r~~~~~~~~  435 (506)
                      .....++    ...+..|..++.++.......+.....+.+..  .++....+|+..++++.
T Consensus       213 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~  270 (292)
T d1k0ia1         213 KAYREGR----GELLERYSAICLRRIWKAERFSWWMTSVLHRFPDTDAFSQRIQQTELEYYL  270 (292)
T ss_dssp             HHHHHCC----GGGGGGHHHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHH
T ss_pred             eEecCCC----HHHhhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHh
Confidence            6532222    24677888888887776666666666665543  24666667766555544

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.88  E-value=6e-22  Score=186.20  Aligned_cols=232  Identities=21%  Similarity=0.182  Sum_probs=159.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC-CcccccccccchHHHHHHhCchhHHhhcccceecceEEEE--
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP-DRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFK--  136 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~-~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~--  136 (506)
                      ..+|+||||||+||++|+.|+++|++|+|+||++.+. ....+..+++++++.|+++|+........   ........  
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~---~~~~~~~~~~   80 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVP---SSSMEYVDAL   80 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBC---CCEEEEEETT
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccC---CCcceeEecc
Confidence            4689999999999999999999999999999987543 34566678999999999999986554322   22222222  


Q ss_pred             CCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeE
Q 010623          137 DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLT  215 (506)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~v  215 (506)
                      ++.......           ...........+.......+++.++.++ ++++.++++.   ++++++||++  +++|++
T Consensus        81 ~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---v~v~~~dG~~--~~~d~~  144 (265)
T d2voua1          81 TGERVGSVP-----------ADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSET---VQMRFSDGTK--AEANWV  144 (265)
T ss_dssp             TCCEEEEEE-----------CCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSC---EEEEETTSCE--EEESEE
T ss_pred             CCceecccc-----------cccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCc---eEEEECCCCE--EEEEEE
Confidence            122111100           0011111122222222222356677775 9999988774   5677889974  669999


Q ss_pred             EeecCCcccchhhccCCCCCCccceeeEEEeccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCCCCCCCchHH
Q 010623          216 IVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEM  295 (506)
Q Consensus       216 V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  295 (506)
                      |+|||.+|.+|..+.....                                                             
T Consensus       145 v~adG~~s~~r~~~~~~~~-------------------------------------------------------------  163 (265)
T d2voua1         145 IGADGGASVVRKRLLGIET-------------------------------------------------------------  163 (265)
T ss_dssp             EECCCTTCHHHHHHHCCCC-------------------------------------------------------------
T ss_pred             ecccccccccccccccccc-------------------------------------------------------------
Confidence            9999999988763211100                                                             


Q ss_pred             HHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHHHHhh
Q 010623          296 ANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLR  375 (506)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~  375 (506)
                                                            ...+....+...||++|...|..++|.+.+++|+..|++.+.
T Consensus       164 --------------------------------------~~~~~~~~~~~~~~~a~~~~p~~~~g~~~~~~d~~~l~~~l~  205 (265)
T d2voua1         164 --------------------------------------VDRMVHGRVLLIGDAAVTPRPHAAAGGAKASDDARTLAEVFT  205 (265)
T ss_dssp             --------------------------------------CSCSEETTEEECGGGTSBCCGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------ccccccccccccccccccccccccccceeeeccHHHHHHHHh
Confidence                                                  011222356777999999999999999999999999999987


Q ss_pred             hcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Q 010623          376 HLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVF  415 (506)
Q Consensus       376 ~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~  415 (506)
                      ..      ......++.|+..|.++.+.+...++....+.
T Consensus       206 ~~------~~~~~~l~~~~~~r~~~~~~~~~~~r~~g~~~  239 (265)
T d2voua1         206 KN------HDLRGSLQSWETRQLQQGHAYLNKVKKMASRL  239 (265)
T ss_dssp             HC------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hc------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            63      22457889999999988887776665554444

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.78  E-value=6.4e-19  Score=173.59  Aligned_cols=132  Identities=20%  Similarity=0.250  Sum_probs=81.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHH------CCCcEEEEecCCCCCCccc-ccccccchHHHHHHhCchhHHhhcccc-e-
Q 010623           58 PFDADVIVVGAGVAGAALANTLAK------DGRRVHVIERDLSEPDRIV-GELLQPGGYLKLIELGLEDCVEQIDAQ-R-  128 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~------~G~~v~vvE~~~~~~~~~~-g~~l~~~~~~~l~~~g~~~~~~~~~~~-~-  128 (506)
                      .+++|||||||||||++||+.|+|      .|++|+|+||...+..+.+ |..+.+++++.+   ............ . 
T Consensus        30 ~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~Ggvl~~~~l~~l---~p~~~~~~~~~~~~~  106 (380)
T d2gmha1          30 AEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEEL---FPDWKEKGAPLNTPV  106 (380)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHH---CTTHHHHTCCCCEEC
T ss_pred             cccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccccccccHHHHHHH---ccchhhhccccccce
Confidence            346999999999999999999998      8999999999988877765 555666654433   221111111100 1 


Q ss_pred             -ecceEEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCC
Q 010623          129 -VFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKG  193 (506)
Q Consensus       129 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~  193 (506)
                       .....+..........+...........+.+.+..+...+.+.+++. ++.+..+. +.++..+++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae~~-g~~~~~~~~~~~~l~~~~  172 (380)
T d2gmha1         107 TEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEAL-GVEVYPGYAAAEILFHED  172 (380)
T ss_dssp             CEEEEEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHT-TCEEETTCCEEEEEECTT
T ss_pred             ecceEEEeeccccccccccCchhcccccceeehhhHHHHHHHHHHhhc-cceeeeecceeeeeeccC
Confidence             11111111222111111111122233456678889999999999998 66666664 777766544

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.59  E-value=3.1e-15  Score=138.60  Aligned_cols=151  Identities=19%  Similarity=0.237  Sum_probs=89.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc--cc----ccccchHHHHHH-hCchhHHh-----hccc
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIV--GE----LLQPGGYLKLIE-LGLEDCVE-----QIDA  126 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~--g~----~l~~~~~~~l~~-~g~~~~~~-----~~~~  126 (506)
                      ++|||+||||||+||++|+.|+++|++|+|+||++....+..  +.    ..+......+.. .+......     ....
T Consensus         1 M~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (251)
T d2i0za1           1 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNN   80 (251)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCH
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhh
Confidence            469999999999999999999999999999999875543211  00    011111111111 11000000     0000


Q ss_pred             c------eecceEEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEE
Q 010623          127 Q------RVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQ  199 (506)
Q Consensus       127 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~  199 (506)
                      .      ...+........            ............+.+.|.+.+++. ++++++++ |+++..+++++.+|.
T Consensus        81 ~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~~i~~~L~~~~~~~-gv~i~~~~~v~~i~~~~~~~~~v~  147 (251)
T d2i0za1          81 EDIITFFENLGVKLKEEDH------------GRMFPVSNKAQSVVDALLTRLKDL-GVKIRTNTPVETIEYENGQTKAVI  147 (251)
T ss_dssp             HHHHHHHHHTTCCEEECGG------------GEEEETTCCHHHHHHHHHHHHHHT-TCEEECSCCEEEEEEETTEEEEEE
T ss_pred             HHHHHHHHhcCCccccccc------------cceecccccHHHHHHHHHHHHHHc-CCcccCCcEEEEEEEECCEEEEEE
Confidence            0      000110000000            000001123346788899999887 78888885 999999888766554


Q ss_pred             EEeCCccEEEEEcCeEEeecCCcccch
Q 010623          200 YKTKAGEELTAYAPLTIVCDGCFSNLR  226 (506)
Q Consensus       200 v~~~~G~~~~i~a~~vV~AdG~~S~vR  226 (506)
                        .++|+.  ++||+||+|||++|..+
T Consensus       148 --~~~g~~--i~a~~vI~AtGg~S~p~  170 (251)
T d2i0za1         148 --LQTGEV--LETNHVVIAVGGKSVPQ  170 (251)
T ss_dssp             --ETTCCE--EECSCEEECCCCSSSGG
T ss_pred             --eCCCCe--EecCeEEEccCCccccc
Confidence              567764  67999999999999543

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.55  E-value=2.5e-14  Score=136.72  Aligned_cols=164  Identities=22%  Similarity=0.209  Sum_probs=97.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc--cccccccchHHHHHHhCchhHHhh--------------
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI--VGELLQPGGYLKLIELGLEDCVEQ--------------  123 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~--~g~~l~~~~~~~l~~~g~~~~~~~--------------  123 (506)
                      ++||||||||++||++|+.|+++|.+|+|+||.+.....+  .+..+........+..++.+....              
T Consensus        16 ~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s~~s~G~~~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~d   95 (308)
T d1y0pa2          16 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIND   95 (308)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcceecCCCCccccchhhhhhhccchHHHHHHHHHhhhhhccc
Confidence            5999999999999999999999999999999987543221  111122111122222222111000              


Q ss_pred             ------c--------ccceecceEEEECCceeeeecCCcCCC--CCcccccccchHHHHHHHHHHHcCCCEEEEece-EE
Q 010623          124 ------I--------DAQRVFGYALFKDGNRTQISYPLEKFH--SDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VT  186 (506)
Q Consensus       124 ------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~  186 (506)
                            +        ......+..+...     .........  ..+.........+...+.+.+.+. +++++.++ ++
T Consensus        96 ~~lv~~~~~~~~~~i~~L~~~Gv~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~-gv~i~~~~~v~  169 (308)
T d1y0pa2          96 PALVKVLSSHSKDSVDWMTAMGADLTDV-----GMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKR-NIDLRMNTRGI  169 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCCEE-----ECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHT-TCEEESSEEEE
T ss_pred             hHHHHHHHHhhhHHHHHHHHcCCCcccc-----ccccccccccccccccccchHHHHHHHHHHHHHhc-cceEEEeeccc
Confidence                  0        0000001111000     000000000  001111223345778888888887 78888775 89


Q ss_pred             EEEeeC-CeEEEEEEEeCCccEEEEEcCeEEeecCCcccchhhc
Q 010623          187 SLLEEK-GTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSL  229 (506)
Q Consensus       187 ~~~~~~-~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~~l  229 (506)
                      ++..++ ++|.||.+.+.++...+++|+.||.|+|+++...+++
T Consensus       170 ~li~~~~G~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~~n~~~~  213 (308)
T d1y0pa2         170 EVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFAKNNERV  213 (308)
T ss_dssp             EEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCTTCHHHH
T ss_pred             hhhhhcccccccccccccccceeEeecCeEEEccCcccccHHHH
Confidence            988755 6899999988777778899999999999999766544

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.51  E-value=9.7e-15  Score=137.14  Aligned_cols=70  Identities=17%  Similarity=0.180  Sum_probs=53.6

Q ss_pred             ccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCccc-chhhccCCC
Q 010623          157 RGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN-LRRSLCNPK  233 (506)
Q Consensus       157 ~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~-vR~~l~~~~  233 (506)
                      ..++...+...|.+.+.+. |+++++++ |+++..+++.   +.|.+++|+   ++||.||.|+|++|. +.+.+++..
T Consensus       146 g~i~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~---~~V~t~~g~---i~a~~vV~AaG~~s~~l~~~~G~~~  217 (276)
T d1ryia1         146 VHVEPYFVCKAYVKAAKML-GAEIFEHTPVLHVERDGEA---LFIKTPSGD---VWANHVVVASGVWSGMFFKQLGLNN  217 (276)
T ss_dssp             CBCCHHHHHHHHHHHHHHT-TCEEETTCCCCEEECSSSS---EEEEETTEE---EEEEEEEECCGGGTHHHHHHTTCCC
T ss_pred             eeeecccchhHHHHHHHHc-CCEEecceEEEeEEeecce---EEEecCCeE---EEcCEEEECCCccHHHHHhhcCCCc
Confidence            3567778999999999988 67888774 9999877653   345567773   679999999999994 666776643

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.48  E-value=3.4e-14  Score=131.72  Aligned_cols=148  Identities=18%  Similarity=0.146  Sum_probs=85.6

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc--cc-c---------------cccc-hHHHHHHhCc
Q 010623           57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIV--GE-L---------------LQPG-GYLKLIELGL  117 (506)
Q Consensus        57 ~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~--g~-~---------------l~~~-~~~~l~~~g~  117 (506)
                      |...+||+||||||+||+||+.|+++|++|+|+||.+.+..+..  |. .               ..+. ....|.....
T Consensus         1 M~~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~   80 (253)
T d2gqfa1           1 MSQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTN   80 (253)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCH
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhcc
Confidence            34569999999999999999999999999999999976542210  00 0               0011 1122332222


Q ss_pred             hhHHhhcccceecceEEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeE-
Q 010623          118 EDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTI-  195 (506)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v-  195 (506)
                      .+.+....   ..+.........             .....-....+.+.|.+.+++. +++++.++ |+++...++.. 
T Consensus        81 ~~~~~~~~---~~g~~~~~~~~~-------------~~~~~~~a~~i~~~L~~~~~~~-gV~i~~~~~V~~i~~~~~~~~  143 (253)
T d2gqfa1          81 WDFISLVA---EQGITYHEKELG-------------QLFCDEGAEQIVEMLKSECDKY-GAKILLRSEVSQVERIQNDEK  143 (253)
T ss_dssp             HHHHHHHH---HTTCCEEECSTT-------------EEEETTCTHHHHHHHHHHHHHH-TCEEECSCCEEEEEECCSCSS
T ss_pred             cchhhhhh---hcCcceeeecCC-------------ccccccchhHHHHHHHHHHHHc-CCCeecCceEEEEEeecCCce
Confidence            22211110   011111110000             0000112346788888888887 78888885 99988654421 


Q ss_pred             EEEEEEeCCccEEEEEcCeEEeecCCccc
Q 010623          196 KGVQYKTKAGEELTAYAPLTIVCDGCFSN  224 (506)
Q Consensus       196 ~~v~v~~~~G~~~~i~a~~vV~AdG~~S~  224 (506)
                      ..+.+. .+++  +++||.||.|+|+.|.
T Consensus       144 v~~~~~-~~~~--~~~a~~VIiAtGG~S~  169 (253)
T d2gqfa1         144 VRFVLQ-VNST--QWQCKNLIVATGGLSM  169 (253)
T ss_dssp             CCEEEE-ETTE--EEEESEEEECCCCSSC
T ss_pred             eEEEEe-cCCE--EEEeCEEEEcCCcccc
Confidence            112333 3443  4779999999999873

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.48  E-value=9.9e-14  Score=133.33  Aligned_cols=166  Identities=18%  Similarity=0.225  Sum_probs=99.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc--cccccccchHHHHHHhCchhHHhh------------
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI--VGELLQPGGYLKLIELGLEDCVEQ------------  123 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~--~g~~l~~~~~~~l~~~g~~~~~~~------------  123 (506)
                      +.++||+|||||++||++|+.|+++|++|+|+||.+.....+  .+..++..........+..+....            
T Consensus        21 ~et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~~s~Ggi~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~  100 (322)
T d1d4ca2          21 KETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNI  100 (322)
T ss_dssp             CEECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTC
T ss_pred             CCcceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCCcccccCchhhhhcccCCCHHHHHHHHHhccccc
Confidence            346899999999999999999999999999999987543322  111222222222222222111100            


Q ss_pred             --------ccc--------ceecceEEEECCceeeeecCCcCCCC--CcccccccchHHHHHHHHHHHcCCCEEEEece-
Q 010623          124 --------IDA--------QRVFGYALFKDGNRTQISYPLEKFHS--DVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-  184 (506)
Q Consensus       124 --------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-  184 (506)
                              +..        ....+..+...     ..+.......  .+.........+.+.|.+.+.+. +++++.++ 
T Consensus       101 ~d~~~~~~~~~~~~~~i~~l~~~Gv~~~~~-----~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~-gv~i~~~t~  174 (322)
T d1d4ca2         101 NDPELVKVLANNSSDSIDWLTSMGADMTDV-----GRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKR-GTDIRLNSR  174 (322)
T ss_dssp             SCHHHHHHHHHTHHHHHHHHHHTTCCCCEE-----ECCTTCSSCCEEESTTTCCSHHHHHHHHHHHHHHT-TCEEETTEE
T ss_pred             cCHHHhhhhhhhhhhhhhhhhhhccccccc-----ccccccccccccccccccchhHHHHHHHHHHHHhc-CceEEEeee
Confidence                    000        00001100000     0000000000  01111122346778888888887 78888775 


Q ss_pred             EEEEEee-CCeEEEEEEEeCCccEEEEEcCeEEeecCCcccchhhc
Q 010623          185 VTSLLEE-KGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSL  229 (506)
Q Consensus       185 v~~~~~~-~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~~l  229 (506)
                      |+++..+ +++|.+|.+.+.+++...++|+.||.|+|+++...+++
T Consensus       175 v~~li~d~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG~~~n~~~~  220 (322)
T d1d4ca2         175 VVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERV  220 (322)
T ss_dssp             EEEEECCSSSCCCEEEEEETTTEEEEEECSEEEECCCCCTTCHHHH
T ss_pred             cccccccccccccceEEEeecccEEEEeCCeEEEcCCCcccCHHHH
Confidence            9998875 56889999988777777899999999999999765543

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.45  E-value=5.5e-14  Score=134.79  Aligned_cols=164  Identities=18%  Similarity=0.184  Sum_probs=97.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc--ccccccchHHHHHHhCchhHHhhc-------------
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIV--GELLQPGGYLKLIELGLEDCVEQI-------------  124 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~--g~~l~~~~~~~l~~~g~~~~~~~~-------------  124 (506)
                      ++||||||||++||++|+.|+++|.+|+|+||.+.....+.  +..++..........++.+.....             
T Consensus        19 ~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S~~a~Ggi~a~~~~~~~~~g~~d~~~~~~~d~~~~~~~~~d   98 (317)
T d1qo8a2          19 TTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQND   98 (317)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCCCcccccchhhhhcccCCcHHHHHHHHHHhhccccc
Confidence            58999999999999999999999999999999875433221  112222122222222222111000             


Q ss_pred             ---------------ccceecceEEEECCceeeeecCCcCCCCC--cccccccchHHHHHHHHHHHcCCCEEEEec-eEE
Q 010623          125 ---------------DAQRVFGYALFKDGNRTQISYPLEKFHSD--VAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVT  186 (506)
Q Consensus       125 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~  186 (506)
                                     ......+..+..     ............  +......-..+...|.+.+++. ++.++.+ +++
T Consensus        99 ~~lv~~~~~~a~~~i~~l~~~Gv~~~~-----~~~~gg~~~~r~~~~~~g~~~g~~i~~~L~~~~~~~-g~~i~~~~~v~  172 (317)
T d1qo8a2          99 IKLVTILAEQSADGVQWLESLGANLDD-----LKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQ-GIDTRLNSRVV  172 (317)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCCE-----EECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHT-TCCEECSEEEE
T ss_pred             hhHHHHHHhhhhhhhhhHHHhhhcccc-----cccccCcccccccccccccccchhhhHHHHHHhhhc-cceeeeccchh
Confidence                           000000110000     000000000000  0000111235788899999988 5666666 588


Q ss_pred             EEEe-eCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccchhhc
Q 010623          187 SLLE-EKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSL  229 (506)
Q Consensus       187 ~~~~-~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~~l  229 (506)
                      ++.. ++++|.||.+.+.+++.+.+.|+.||.|+|+++...+++
T Consensus       173 ~l~~~~~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~~n~~~~  216 (317)
T d1qo8a2         173 KLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGMNKEMI  216 (317)
T ss_dssp             EEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTTCHHHH
T ss_pred             heeecccccceeeEeecccceEEEEeccceEEeccccccCHHHH
Confidence            8865 567899999999888888899999999999999766544

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.43  E-value=4.9e-13  Score=127.22  Aligned_cols=70  Identities=26%  Similarity=0.342  Sum_probs=55.2

Q ss_pred             ccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCccc-chhhccCC
Q 010623          157 RGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN-LRRSLCNP  232 (506)
Q Consensus       157 ~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~-vR~~l~~~  232 (506)
                      ..++...+...|.+.+.+. +++++.+ +|+++..+++++++|.  +++|   +++||.||.|+|++|. +.+.++..
T Consensus       143 g~~~p~~l~~~l~~~a~~~-gv~i~~~~~V~~i~~~~~~v~~V~--T~~g---~i~a~~VV~aaG~~s~~l~~~~g~~  214 (305)
T d1pj5a2         143 GLASAARAVQLLIKRTESA-GVTYRGSTTVTGIEQSGGRVTGVQ--TADG---VIPADIVVSCAGFWGAKIGAMIGMA  214 (305)
T ss_dssp             EEECHHHHHHHHHHHHHHT-TCEEECSCCEEEEEEETTEEEEEE--ETTE---EEECSEEEECCGGGHHHHHHTTTCC
T ss_pred             cccchhhhhhhHHhhhhcc-cccccCCceEEEEEEeCCEEEEEe--ccce---eEECCEEEEecchhHHHHHHHcCCc
Confidence            3456778999999999987 7788877 4999999999877665  5666   3789999999999995 55555544

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.43  E-value=3e-13  Score=127.13  Aligned_cols=165  Identities=21%  Similarity=0.166  Sum_probs=94.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc--cc-cc-c----c--cchHH-HHHHhCchhHHhhc-c-
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI--VG-EL-L----Q--PGGYL-KLIELGLEDCVEQI-D-  125 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~--~g-~~-l----~--~~~~~-~l~~~g~~~~~~~~-~-  125 (506)
                      ++|||+|||||++|+++|+.|+++|++|+|+||.+......  .+ .. +    .  +.-.+ ..+....+..+.+. . 
T Consensus         2 ~~yDvvIIGaGi~Gls~A~~La~~G~~V~viE~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~e~~~   81 (281)
T d2gf3a1           2 THFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVPLALRSQELWYELEKETHH   81 (281)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSCSSSSSCSSEEEECSSCTTCGGGHHHHHHHHHHHHHHHHHCSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcccccCCCcceeecccCCcchhhhhcccccceeecchhhhhh
Confidence            37999999999999999999999999999999975432211  11 11 1    0  00001 11111122211110 0 


Q ss_pred             -cceecceEE-EECCce------------------------eeeecCCcCCCC------CcccccccchHHHHHHHHHHH
Q 010623          126 -AQRVFGYAL-FKDGNR------------------------TQISYPLEKFHS------DVAGRGFHNGRFVQRLREKAA  173 (506)
Q Consensus       126 -~~~~~~~~~-~~~~~~------------------------~~~~~~~~~~~~------~~~~~~i~~~~l~~~L~~~~~  173 (506)
                       .....+... ......                        ....+|......      .+....++...+...|.+.++
T Consensus        82 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~p~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~a~  161 (281)
T d2gf3a1          82 KIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAE  161 (281)
T ss_dssp             CCEECCCEEEEEETTCCHHHHHHHHHHHHTTCCCEEEETHHHHHHSTTCCCCTTEEEEEETTCEEEEHHHHHHHHHHHHH
T ss_pred             ccccccceeeeeecchhhhhhhhhhhhccccchhhhhhhHhhhhhhhcccccccceeeeccccccccccccccccccccc
Confidence             001111111 111110                        000111100000      122234566789999999999


Q ss_pred             cCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCccc-chhhcc
Q 010623          174 SLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN-LRRSLC  230 (506)
Q Consensus       174 ~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~-vR~~l~  230 (506)
                      +. |++++.++ |+++..++++   +.|.+++|+   ++||.||.|+|++|. +-+.++
T Consensus       162 ~~-Gv~i~~~~~V~~i~~~~~~---v~V~t~~g~---i~a~~VViAaG~~s~~l~~~lg  213 (281)
T d2gf3a1         162 AR-GAKVLTHTRVEDFDISPDS---VKIETANGS---YTADKLIVSMGAWNSKLLSKLN  213 (281)
T ss_dssp             HT-TCEEECSCCEEEEEECSSC---EEEEETTEE---EEEEEEEECCGGGHHHHGGGGT
T ss_pred             cc-cccccCCcEEEEEEEECCE---EEEEECCcE---EEcCEEEECCCCcchhhHHhcC
Confidence            98 68888774 9999988885   456677774   679999999999985 333344

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=8e-12  Score=118.98  Aligned_cols=62  Identities=15%  Similarity=0.286  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEeecCCccc
Q 010623          163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSN  224 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~  224 (506)
                      .+...+.+.+.+.++++++..+ ++++..+++++.|+.+.+ .+|+.+.+.|+.||.|+|+++.
T Consensus       135 ~~~~~~l~~~~~~~~v~i~~~~~v~~Ll~d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~  198 (311)
T d1kf6a2         135 HMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGR  198 (311)
T ss_dssp             HHHHHHHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGG
T ss_pred             HHHHhHHHHHHccCcceeEeeeEeeeeEecCCcceeEEEEEcCCCcEEEEECCEEEEcCCCccc
Confidence            3555566666666789999886 999999999999987765 7898888999999999999875

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.32  E-value=9.8e-12  Score=119.76  Aligned_cols=62  Identities=15%  Similarity=0.303  Sum_probs=52.6

Q ss_pred             hHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEeecCCccc
Q 010623          162 GRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSN  224 (506)
Q Consensus       162 ~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~  224 (506)
                      ..+...|.+.+.+. +++++..+ ++++..+++++.++.+.+ .+|+..++.|+.||.|+|+++.
T Consensus       158 ~~i~~~l~~~~~~~-gv~i~~~~~~~~li~~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~  221 (336)
T d2bs2a2         158 HTMLFAVANECLKL-GVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGR  221 (336)
T ss_dssp             HHHHHHHHHHHHHH-TCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGG
T ss_pred             HHHHHHHHHHHHhc-cccccceeeeeecccccccccceeEEeccCCcEEEEecCeEEEecccccc
Confidence            35777888888776 78888875 999999999999888865 6898888999999999999874

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.28  E-value=3.6e-11  Score=106.99  Aligned_cols=122  Identities=29%  Similarity=0.310  Sum_probs=79.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCch-hHH-hhcccceecceEEEEC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLE-DCV-EQIDAQRVFGYALFKD  137 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~-~~~-~~~~~~~~~~~~~~~~  137 (506)
                      .||||||||||||+.||+.++|.|.+++|||++...-   .....+|...      +.. ..+ .+.+            
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~i---g~~~cnp~~g------g~~kg~l~reid------------   60 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAV---MMPFLPPKPP------FPPGSLLERAYD------------   60 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGT---TCCSSCCCSC------CCTTCHHHHHCC------------
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchh---cccccCCccc------cCCCcceeeeee------------
Confidence            5999999999999999999999999999999873211   0001111000      000 000 0000            


Q ss_pred             CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEe
Q 010623          138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV  217 (506)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~  217 (506)
                                   ...+..     ..+...+.+.+...++.+++.++|+++..+++++.+|+  +.+|.+  ++|+.||.
T Consensus        61 -------------~kG~av-----~a~raQ~k~~l~~~~nL~i~q~~V~dli~e~~~v~gV~--t~~G~~--~~AkaVIL  118 (230)
T d2cula1          61 -------------PKDERV-----WAFHARAKYLLEGLRPLHLFQATATGLLLEGNRVVGVR--TWEGPP--ARGEKVVL  118 (230)
T ss_dssp             -------------TTCCCH-----HHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEE--ETTSCC--EECSEEEE
T ss_pred             -------------ccchhh-----hhHHHHHHHHHhhhcCHHHHhccceeeEecccceeeEE--eccccE--EEEeEEEE
Confidence                         000100     11223345556667799999999999999999877665  677874  56999999


Q ss_pred             ecCCccc
Q 010623          218 CDGCFSN  224 (506)
Q Consensus       218 AdG~~S~  224 (506)
                      |+|-+..
T Consensus       119 tTGTFL~  125 (230)
T d2cula1         119 AVGSFLG  125 (230)
T ss_dssp             CCTTCSS
T ss_pred             ccCccee
Confidence            9998764

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.23  E-value=9.4e-12  Score=119.92  Aligned_cols=157  Identities=20%  Similarity=0.230  Sum_probs=83.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCCc-----ccccccccchHHHHHHhCchhHHhhcccceecceEE
Q 010623           62 DVIVVGAGVAGAALANTLAKDG--RRVHVIERDLSEPDR-----IVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYAL  134 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G--~~v~vvE~~~~~~~~-----~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~  134 (506)
                      +|+|||||++||++|..|++.|  .+|+|+||++.....     ..+...........  .. .+...............
T Consensus         6 rVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~s~~   82 (335)
T d2gv8a1           6 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPI--LT-TEPIVGPAALPVYPSPL   82 (335)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTT--CC-CCCBCCSSSCCBCCCCC
T ss_pred             eEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCcccccc--cc-ccccccccccccccccc
Confidence            6999999999999999998876  599999999754310     00100000000000  00 00000000000000000


Q ss_pred             EE----CCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeC-Cc-cE
Q 010623          135 FK----DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTK-AG-EE  207 (506)
Q Consensus       135 ~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~-~G-~~  207 (506)
                      +.    ........+...... .......++.++.+.|...+... +..+++++ |++++.++++.. |++.+. ++ +.
T Consensus        83 y~~l~~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~yl~~~~~~~-~~~I~~~t~V~~v~~~~~~w~-Vt~~~~~~~~~~  159 (335)
T d2gv8a1          83 YRDLQTNTPIELMGYCDQSFK-PQTLQFPHRHTIQEYQRIYAQPL-LPFIKLATDVLDIEKKDGSWV-VTYKGTKAGSPI  159 (335)
T ss_dssp             CTTCBCSSCHHHHSCTTCCCC-TTCCSSCBHHHHHHHHHHHHGGG-GGGEECSEEEEEEEEETTEEE-EEEEESSTTCCE
T ss_pred             chhhhcCCcHhhhhhhhhcCC-cccccCCchHHHHHHHHHHHHHh-hhcccCceEEEEEEecCCEEE-EEEEecCCCCeE
Confidence            00    000000001100010 11122456788999999888876 45677775 999999988754 666553 33 33


Q ss_pred             EEEEcCeEEeecCCccc
Q 010623          208 LTAYAPLTIVCDGCFSN  224 (506)
Q Consensus       208 ~~i~a~~vV~AdG~~S~  224 (506)
                      .+..+|+||.|+|.+|.
T Consensus       160 ~~~~~d~VI~AtG~~s~  176 (335)
T d2gv8a1         160 SKDIFDAVSICNGHYEV  176 (335)
T ss_dssp             EEEEESEEEECCCSSSS
T ss_pred             EEEEeeEEEEccccccc
Confidence            45669999999999883

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.21  E-value=1.1e-12  Score=122.32  Aligned_cols=40  Identities=15%  Similarity=0.086  Sum_probs=35.3

Q ss_pred             CCCCcEEEEccCCCCCCCCcchhh-HHHHHHHHHHHHHhhh
Q 010623          337 YPTPGALLMGDAFNMRHPLTGGGM-TVALSDIVILRNLLRH  376 (506)
Q Consensus       337 ~~~~rv~LvGDAAh~~~P~~GqG~-n~ai~Da~~La~~L~~  376 (506)
                      |..+||+++|||+|.+.|.+++|+ +.|+++|..|+..|.+
T Consensus       304 ~~~~~v~~~GD~~~~~~~~~~~gA~~sG~~aA~~l~~~~~~  344 (347)
T d1b5qa1         304 APVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQK  344 (347)
T ss_dssp             CCBTTEEECSGGGCSSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEccccCcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence            556899999999999999999995 7889999999988864

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.19  E-value=2.3e-11  Score=114.57  Aligned_cols=139  Identities=24%  Similarity=0.228  Sum_probs=81.5

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEE
Q 010623           57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFK  136 (506)
Q Consensus        57 ~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  136 (506)
                      ++.++||+|||||++||++|..|.+.|++|+|+||.+....    . ...+     +.-|..-     +. ....+. +.
T Consensus         4 p~~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGG----t-W~~n-----~ypg~~~-----d~-~~~~~~-~s   66 (298)
T d1w4xa1           4 PPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGG----V-WYWN-----RYPGARC-----DI-ESIEYC-YS   66 (298)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT----H-HHHC-----CCTTCBC-----SS-CTTTSS-CC
T ss_pred             CCCCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCccc----c-cccC-----CCCCcee-----cc-cccccc-cc
Confidence            44579999999999999999999999999999999865321    0 0000     0000000     00 000000 00


Q ss_pred             CCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCE--EEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcC
Q 010623          137 DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNV--RLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAP  213 (506)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v--~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~  213 (506)
                      ....     +..+  .........+..+.+.|.+.+++. ++  .+++++ |+++..+++.. ..+++..++.+  +++|
T Consensus        67 ~~~~-----~~~~--~~~~~~~p~~~e~~~Yl~~~a~~~-~L~~~I~f~t~V~~~~~de~~~-~W~V~~~~~~~--~~~~  135 (298)
T d1w4xa1          67 FSEE-----VLQE--WNWTERYASQPEILRYINFVADKF-DLRSGITFHTTVTAAAFDEATN-TWTVDTNHGDR--IRAR  135 (298)
T ss_dssp             SCHH-----HHHH--CCCCBSSCBHHHHHHHHHHHHHHT-TGGGGEECSCCEEEEEEETTTT-EEEEEETTCCE--EEEE
T ss_pred             cccc-----ccCC--CCCccccCccchHHHHHHHHHHHc-CCcccccCCcEEEEEEEecCCC-ceeeccccccc--cccc
Confidence            0000     0000  000111235667888888888877 44  366675 99998544321 35666777764  5699


Q ss_pred             eEEeecCCcc
Q 010623          214 LTIVCDGCFS  223 (506)
Q Consensus       214 ~vV~AdG~~S  223 (506)
                      +||.|+|..|
T Consensus       136 ~~i~atG~ls  145 (298)
T d1w4xa1         136 YLIMASGQLS  145 (298)
T ss_dssp             EEEECCCSCC
T ss_pred             eEEEeecccc
Confidence            9999999876

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=4.1e-11  Score=113.70  Aligned_cols=59  Identities=17%  Similarity=0.209  Sum_probs=44.3

Q ss_pred             HHHHHHcCCCEEEEece-EEEEEeeCC-------eEEEEEEEe-CCccEEEEEcCeEEeecCCcccchh
Q 010623          168 LREKAASLPNVRLEQGT-VTSLLEEKG-------TIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNLRR  227 (506)
Q Consensus       168 L~~~~~~~~~v~i~~~~-v~~~~~~~~-------~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~vR~  227 (506)
                      +.+.+.+ .++.++..+ ++++..+++       +++|+.+.+ .+|+...+.++.||.|+|.++.+.+
T Consensus       144 ~~~~~~~-~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~~~~~  211 (305)
T d1chua2         144 VSKALNH-PNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQ  211 (305)
T ss_dssp             HHHHHHC-TTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGSS
T ss_pred             HHHHHhc-cCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeecccccee
Confidence            3344444 488888875 888887654       688888865 4777778899999999999986543

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=99.14  E-value=2.4e-10  Score=106.70  Aligned_cols=135  Identities=21%  Similarity=0.178  Sum_probs=83.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCCCCCccccc-------ccccchHHHHHHhCchhHHhhcccceec
Q 010623           59 FDADVIVVGAGVAGAALANTLAK-DGRRVHVIERDLSEPDRIVGE-------LLQPGGYLKLIELGLEDCVEQIDAQRVF  130 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~-~G~~v~vvE~~~~~~~~~~g~-------~l~~~~~~~l~~~g~~~~~~~~~~~~~~  130 (506)
                      .++||+||||||+||++|+.|++ .|++|+|+||++.........       .+.......++++|+.            
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~~------------   99 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVA------------   99 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCC------------
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcCCc------------
Confidence            36899999999999999999987 599999999987654322211       1122222333333221            


Q ss_pred             ceEEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-------
Q 010623          131 GYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-------  202 (506)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-------  202 (506)
                         +...              .........+..+...+.+.+... +..+..+. +.++..+++++.++....       
T Consensus       100 ---~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~gv~~~~~~~~~~~  161 (278)
T d1rp0a1         100 ---YDEQ--------------DTYVVVKHAALFTSTIMSKLLARP-NVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNH  161 (278)
T ss_dssp             ---CEEC--------------SSEEEESCHHHHHHHHHHHHHTST-TEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCT
T ss_pred             ---eecC--------------CccceecccHHHHHHHHHHHHHhC-CCEEEeCCcceeeeecCCeEEEEEeccceeeeee
Confidence               0000              000111223445666666666654 77887775 888888888887765421       


Q ss_pred             ---CCccEEEEEcCeEEeecCCcc
Q 010623          203 ---KAGEELTAYAPLTIVCDGCFS  223 (506)
Q Consensus       203 ---~~G~~~~i~a~~vV~AdG~~S  223 (506)
                         ......+++++++|+|+|..+
T Consensus       162 ~~~~~~~~~~~~a~~vv~a~G~~~  185 (278)
T d1rp0a1         162 HTQSCMDPNVMEAKIVVSSCGHDG  185 (278)
T ss_dssp             TTSSCCCCEEEEEEEEEECCCSSS
T ss_pred             cccccccceeeccceEEECcCCCc
Confidence               111224678999999999654

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=1.4e-10  Score=111.19  Aligned_cols=62  Identities=15%  Similarity=0.218  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHcCCCEEEEec-eEEEEEe-eCCeEEEEEE-EeCCccEEEEEcCeEEeecCCcccc
Q 010623          163 RFVQRLREKAASLPNVRLEQG-TVTSLLE-EKGTIKGVQY-KTKAGEELTAYAPLTIVCDGCFSNL  225 (506)
Q Consensus       163 ~l~~~L~~~~~~~~~v~i~~~-~v~~~~~-~~~~v~~v~v-~~~~G~~~~i~a~~vV~AdG~~S~v  225 (506)
                      .+...|.+.+.+. +++++.. .++++.. +++++.++.. ...+|+...+.|+.||.|+|+.+.+
T Consensus       144 ~i~~~L~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~g~~~~~~~~g~~~~~~a~~vIlAtGG~~~l  208 (330)
T d1neka2         144 ALLHTLYQQNLKN-HTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRI  208 (330)
T ss_dssp             HHHHHHHHHHHHT-TCEEECSEEEEEEEECTTSCEEEEEEEETTTCCEEEEEESCEEECCCCCGGG
T ss_pred             HHHHHHHHHHHhc-CCeEEEEEEEEEeeeeccccceeeeeEEccCCcEEEEeccEEEEcCCCcccc
Confidence            5778888888877 6666666 4777765 4555655444 4578888889999999999998765

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.07  E-value=8.2e-11  Score=111.24  Aligned_cols=37  Identities=30%  Similarity=0.469  Sum_probs=33.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD   97 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~   97 (506)
                      +||+|||||++||++|+.|+++|++|+|+||++....
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG   37 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGG   37 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCc
Confidence            4899999999999999999999999999999876543

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=6.8e-10  Score=107.16  Aligned_cols=35  Identities=40%  Similarity=0.538  Sum_probs=32.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP   96 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~   96 (506)
                      ||+|||||++||++|+.|+++|++|+|+|+++...
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~G   35 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVG   35 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSB
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCc
Confidence            89999999999999999999999999999987553

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.00  E-value=5.1e-10  Score=107.28  Aligned_cols=36  Identities=39%  Similarity=0.559  Sum_probs=33.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP   96 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~   96 (506)
                      -+|+||||||+||++|+.|+++|++|+|+|+++...
T Consensus        31 kkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~G   66 (370)
T d2iida1          31 KHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPG   66 (370)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSB
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            589999999999999999999999999999987544

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.97  E-value=2.4e-09  Score=85.39  Aligned_cols=94  Identities=18%  Similarity=0.225  Sum_probs=70.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+...+.                  .                       
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~------------------~-----------------------   60 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS------------------F-----------------------   60 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT------------------S-----------------------
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhh------------------c-----------------------
Confidence            47999999999999999999999999999998632100                  0                       


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD  219 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad  219 (506)
                                          ...+.+.+.+.++++ +++++.++ ++++..+++.  .+.+..++|++  +.+|.||.|+
T Consensus        61 --------------------d~~~~~~~~~~l~~~-GV~~~~~~~v~~i~~~~~~--~~~v~~~~g~~--~~~D~vi~a~  115 (116)
T d1gesa2          61 --------------------DPMISETLVEVMNAE-GPQLHTNAIPKAVVKNTDG--SLTLELEDGRS--ETVDCLIWAI  115 (116)
T ss_dssp             --------------------CHHHHHHHHHHHHHH-SCEEECSCCEEEEEECTTS--CEEEEETTSCE--EEESEEEECS
T ss_pred             --------------------chhhHHHHHHHHHHC-CCEEEeCCEEEEEEEcCCc--EEEEEECCCCE--EEcCEEEEec
Confidence                                012344555566665 79999885 8898877553  24566788874  5699999999


Q ss_pred             C
Q 010623          220 G  220 (506)
Q Consensus       220 G  220 (506)
                      |
T Consensus       116 G  116 (116)
T d1gesa2         116 G  116 (116)
T ss_dssp             C
T ss_pred             C
Confidence            8

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.97  E-value=1.7e-09  Score=104.59  Aligned_cols=38  Identities=26%  Similarity=0.547  Sum_probs=33.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHH----CCCcEEEEecCCCC
Q 010623           58 PFDADVIVVGAGVAGAALANTLAK----DGRRVHVIERDLSE   95 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~----~G~~v~vvE~~~~~   95 (506)
                      ..++||||||||++||++|+.|++    +|.+|+|+||.+..
T Consensus        19 ~~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~   60 (356)
T d1jnra2          19 VVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVE   60 (356)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTT
T ss_pred             EEecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCC
Confidence            346999999999999999999985    79999999998654

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.94  E-value=1e-08  Score=81.97  Aligned_cols=97  Identities=22%  Similarity=0.267  Sum_probs=73.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      +-+++|||||+.|+-+|..|++.|.+|+++|+.+..-+.                  .                      
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~------------------~----------------------   61 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA------------------V----------------------   61 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT------------------S----------------------
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCc------------------c----------------------
Confidence            357999999999999999999999999999998531110                  0                      


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                           ..++.+.+.+.+++. |++++.++ +++++.+++++. +++.+.+++ .++.||+|+.|
T Consensus        62 ---------------------d~ei~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~~-~~~~~D~vlvA  117 (119)
T d3lada2          62 ---------------------DEQVAKEAQKILTKQ-GLKILLGARVTGTEVKNKQVT-VKFVDAEGE-KSQAFDKLIVA  117 (119)
T ss_dssp             ---------------------CHHHHHHHHHHHHHT-TEEEEETCEEEEEEECSSCEE-EEEESSSEE-EEEEESEEEEC
T ss_pred             ---------------------cchhHHHHHHHHHhc-CceeecCcEEEEEEEeCCEEE-EEEEECCCC-EEEECCEEEEe
Confidence                                 112444556666666 89999885 999998887654 555554444 46889999999


Q ss_pred             cC
Q 010623          219 DG  220 (506)
Q Consensus       219 dG  220 (506)
                      .|
T Consensus       118 vG  119 (119)
T d3lada2         118 VG  119 (119)
T ss_dssp             SC
T ss_pred             eC
Confidence            88

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.93  E-value=1.8e-09  Score=99.28  Aligned_cols=36  Identities=42%  Similarity=0.658  Sum_probs=33.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .++.+|+|||||++||++|+.|+++|++|+|+||+.
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            345689999999999999999999999999999975

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.88  E-value=5.9e-09  Score=84.05  Aligned_cols=99  Identities=12%  Similarity=0.194  Sum_probs=76.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+++|||||..|+=+|..+++.|.+|+++|+.+..-+.                                         
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~-----------------------------------------   64 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-----------------------------------------   64 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccccc-----------------------------------------
Confidence            358999999999999999999999999999998532110                                         


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                          ...++.+.+.+.++++ +++++.++ +.+++.+++++. +++.+.+|+..+++||+|+.|
T Consensus        65 --------------------~d~~~~~~l~~~l~~~-gv~~~~~~~v~~v~~~~~g~~-v~~~~~~g~~~~i~~D~vl~A  122 (125)
T d1ojta2          65 --------------------ADRDLVKVWQKQNEYR-FDNIMVNTKTVAVEPKEDGVY-VTFEGANAPKEPQRYDAVLVA  122 (125)
T ss_dssp             --------------------SCHHHHHHHHHHHGGG-EEEEECSCEEEEEEEETTEEE-EEEESSSCCSSCEEESCEEEC
T ss_pred             --------------------chhhHHHHHHHHHHHc-CcccccCcEEEEEEEcCCcEE-EEEEeCCCCeEEEEcCEEEEe
Confidence                                0113455677777776 79898885 999998888654 666666666556889999999


Q ss_pred             cCC
Q 010623          219 DGC  221 (506)
Q Consensus       219 dG~  221 (506)
                      .|.
T Consensus       123 ~GR  125 (125)
T d1ojta2         123 AGR  125 (125)
T ss_dssp             CCE
T ss_pred             cCC
Confidence            984

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.88  E-value=1.5e-09  Score=97.35  Aligned_cols=35  Identities=29%  Similarity=0.443  Sum_probs=33.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      +|||+||||||+|+++|+.+++.|.+|+|+|+.+.
T Consensus         3 ~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~   37 (221)
T d1dxla1           3 ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGA   37 (221)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence            69999999999999999999999999999999754

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.85  E-value=1e-09  Score=96.31  Aligned_cols=116  Identities=16%  Similarity=0.172  Sum_probs=74.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      ++||+||||||+|+.+|+.|+|.|.+|+|+|+.........+......                           +.   
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~---------------------------~~---   54 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTT---------------------------DV---   54 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCS---------------------------EE---
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccch---------------------------hh---
Confidence            589999999999999999999999999999987532221111100000                           00   


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD  219 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad  219 (506)
                         ..+.     .  ........++...+.+.+.+. ++.+..++|+++...++.   ..+.+..+   +..+|.++.+.
T Consensus        55 ---~~~~-----~--~~~~~~~~el~~~~~~q~~~~-g~~i~~~~V~~~~~~~~~---~~v~~~~~---~~~~~~~~~a~  117 (192)
T d1vdca1          55 ---ENFP-----G--FPEGILGVELTDKFRKQSERF-GTTIFTETVTKVDFSSKP---FKLFTDSK---AILADAVILAI  117 (192)
T ss_dssp             ---CCST-----T--CTTCEEHHHHHHHHHHHHHHT-TCEEECCCCCEEECSSSS---EEEECSSE---EEEEEEEEECC
T ss_pred             ---hccc-----c--ccccccchHHHHHHHHHHHhh-cceeeeeeEEecccccCc---EEecccce---eeeeeeEEEEe
Confidence               0000     0  001234556778888888887 678877788888766553   33334333   35699999999


Q ss_pred             CCc
Q 010623          220 GCF  222 (506)
Q Consensus       220 G~~  222 (506)
                      |..
T Consensus       118 g~~  120 (192)
T d1vdca1         118 GAV  120 (192)
T ss_dssp             CEE
T ss_pred             eee
Confidence            963

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.84  E-value=1.6e-08  Score=82.48  Aligned_cols=98  Identities=20%  Similarity=0.229  Sum_probs=69.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+..-.+.    +                                   
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~----~-----------------------------------   75 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERV----T-----------------------------------   75 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT----S-----------------------------------
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccc----c-----------------------------------
Confidence            3589999999999999999999999999999986421110    0                                   


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                           ...+.+.+.+.++++ |++++.++ |++++..++......+..+||++  +.||+||.|
T Consensus        76 ---------------------~~~~~~~~~~~~~~~-GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~--i~~D~vi~a  131 (133)
T d1q1ra2          76 ---------------------APPVSAFYEHLHREA-GVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTR--LPADLVIAG  131 (133)
T ss_dssp             ---------------------CHHHHHHHHHHHHHH-TCEEECSCCEEEEEECTTTCCEEEEEETTSCE--EECSEEEEC
T ss_pred             ---------------------chhhhhhhhhccccc-ccEEEeCCeEEEEEEeCCCceEEEEECCCCCE--EECCEEEEe
Confidence                                 001233444555555 88999885 99887654322112345788874  669999999


Q ss_pred             cC
Q 010623          219 DG  220 (506)
Q Consensus       219 dG  220 (506)
                      .|
T Consensus       132 ~G  133 (133)
T d1q1ra2         132 IG  133 (133)
T ss_dssp             CC
T ss_pred             eC
Confidence            87

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.84  E-value=1.2e-09  Score=100.00  Aligned_cols=41  Identities=32%  Similarity=0.472  Sum_probs=37.5

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 010623           57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD   97 (506)
Q Consensus        57 ~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~   97 (506)
                      |+.+|||||||||++||+||+.|+++|++|+|+||++....
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG   42 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGG   42 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCc
Confidence            66789999999999999999999999999999999976543

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.82  E-value=5.3e-08  Score=77.52  Aligned_cols=93  Identities=20%  Similarity=0.339  Sum_probs=70.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+..-+                  ++                       
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~------------------~~-----------------------   61 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS------------------GF-----------------------   61 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST------------------TS-----------------------
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEecceecc------------------cc-----------------------
Confidence            5899999999999999999999999999999864210                  00                       


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEe
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV  217 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~  217 (506)
                                          ..++.+.+.+.++++ |+.++.++ +++++.+++++. +.+ ..+|+..++.||.||.
T Consensus        62 --------------------d~~~~~~l~~~l~~~-GI~i~~~~~v~~i~~~~~~~~-v~~-~~~g~~~~i~~D~Vlv  116 (117)
T d1ebda2          62 --------------------EKQMAAIIKKRLKKK-GVEVVTNALAKGAEEREDGVT-VTY-EANGETKTIDADYVLV  116 (117)
T ss_dssp             --------------------CHHHHHHHHHHHHHT-TCEEEESEEEEEEEEETTEEE-EEE-EETTEEEEEEESEEEE
T ss_pred             --------------------cchhHHHHHHHHHhc-CCEEEcCCEEEEEEEcCCEEE-EEE-EeCCCEEEEEeEEEEE
Confidence                                012445566667776 79999885 999998887543 443 3466667789999985

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=6.5e-09  Score=90.82  Aligned_cols=111  Identities=17%  Similarity=0.274  Sum_probs=72.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      ..||+||||||+||.+|+.|+|.|.+|+|+|+.+..     +.....            ..+.+                
T Consensus         5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~-----g~~~~~------------~~i~~----------------   51 (190)
T d1trba1           5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKG-----GQLTTT------------TEVEN----------------   51 (190)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTT-----GGGGGC------------SBCCC----------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeeccc-----cccccc------------chhhh----------------
Confidence            579999999999999999999999999999987421     100000            00000                


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD  219 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad  219 (506)
                           ++     ..  ...+....+.+.+...+.+. ++.+..++|+++...++.   ..+...++   ++.++.+|.|.
T Consensus        52 -----~~-----~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~V~~~~~~~~~---~~v~~~~~---~~~~~~viva~  112 (190)
T d1trba1          52 -----WP-----GD--PNDLTGPLLMERMHEHATKF-ETEIIFDHINKVDLQNRP---FRLNGDNG---EYTCDALIIAT  112 (190)
T ss_dssp             -----ST-----TC--CSSCBHHHHHHHHHHHHHHT-TCEEECCCEEEEECSSSS---EEEEESSC---EEEEEEEEECC
T ss_pred             -----hh-----cc--ccccchHHHHHHHHHHHHhc-CcEEecceeEEEecCCCc---EEEEEeee---eEeeeeeeeec
Confidence                 00     00  00123345667777777777 577777788888776653   33444444   35689999999


Q ss_pred             CCc
Q 010623          220 GCF  222 (506)
Q Consensus       220 G~~  222 (506)
                      |..
T Consensus       113 G~~  115 (190)
T d1trba1         113 GAS  115 (190)
T ss_dssp             CEE
T ss_pred             cee
Confidence            964

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.78  E-value=4.3e-08  Score=78.62  Aligned_cols=97  Identities=16%  Similarity=0.213  Sum_probs=68.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -.|+|||||+.|+-+|..|++.|.+|+++|+.+.....     +             .                      
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~-----~-------------d----------------------   62 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI-----K-------------D----------------------   62 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC-----C-------------S----------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhcc-----c-------------c----------------------
Confidence            48999999999999999999999999999998532110     0             0                      


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCe-EEEEEEEeCCccEEEEEcCeEEee
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGT-IKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~-v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                           ..+.+.+.+.+++. ++.++.++ +++++.++++ +..+.... .+...++.||+||.|
T Consensus        63 ---------------------~~~~~~~~~~l~~~-gI~v~~~~~v~~i~~~~~~~~~~~~~~~-~~~~~~i~~D~Vi~a  119 (121)
T d1mo9a2          63 ---------------------NETRAYVLDRMKEQ-GMEIISGSNVTRIEEDANGRVQAVVAMT-PNGEMRIETDFVFLG  119 (121)
T ss_dssp             ---------------------HHHHHHHHHHHHHT-TCEEESSCEEEEEEECTTSBEEEEEEEE-TTEEEEEECSCEEEC
T ss_pred             ---------------------cchhhhhhhhhhcc-ccEEEcCCEEEEEEecCCceEEEEEEEe-CCCCEEEEcCEEEEE
Confidence                                 02334555555665 78888885 9999877543 33333323 333356889999999


Q ss_pred             cC
Q 010623          219 DG  220 (506)
Q Consensus       219 dG  220 (506)
                      .|
T Consensus       120 ~G  121 (121)
T d1mo9a2         120 LG  121 (121)
T ss_dssp             CC
T ss_pred             EC
Confidence            87

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.76  E-value=5.1e-09  Score=94.10  Aligned_cols=37  Identities=35%  Similarity=0.401  Sum_probs=34.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE   95 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~   95 (506)
                      .+|||+|||||||||++|+.|++.|.+|+|+|+....
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~   38 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGK   38 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCC
Confidence            3699999999999999999999999999999997543

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.76  E-value=2.2e-08  Score=79.57  Aligned_cols=93  Identities=24%  Similarity=0.312  Sum_probs=66.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+++|||||+.|+-+|..|++.|.+|+|+|+.+..-+.                  .                       
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~------------------~-----------------------   60 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT------------------Y-----------------------   60 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT------------------S-----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHhhcccceEEEeeecccccc------------------c-----------------------
Confidence            47999999999999999999999999999998632100                  0                       


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD  219 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad  219 (506)
                                          ..++.+.+.+.++++ +++++.++ |+++.  ++.   ......+|+..+++||.||.|.
T Consensus        61 --------------------d~~~~~~l~~~l~~~-gV~i~~~~~V~~i~--~~~---~~~~~~~~~~~~i~~D~vi~A~  114 (115)
T d1lvla2          61 --------------------DSELTAPVAESLKKL-GIALHLGHSVEGYE--NGC---LLANDGKGGQLRLEADRVLVAV  114 (115)
T ss_dssp             --------------------CHHHHHHHHHHHHHH-TCEEETTCEEEEEE--TTE---EEEECSSSCCCEECCSCEEECC
T ss_pred             --------------------cchhHHHHHHHHHhh-cceEEcCcEEEEEc--CCe---EEEEEcCCCeEEEEcCEEEEec
Confidence                                012444555566665 78998885 87774  332   2233444544568899999999


Q ss_pred             C
Q 010623          220 G  220 (506)
Q Consensus       220 G  220 (506)
                      |
T Consensus       115 G  115 (115)
T d1lvla2         115 G  115 (115)
T ss_dssp             C
T ss_pred             C
Confidence            8

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.76  E-value=6.2e-08  Score=77.43  Aligned_cols=90  Identities=26%  Similarity=0.323  Sum_probs=66.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+..-.+.                                         
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~-----------------------------------------   69 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRA-----------------------------------------   69 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT-----------------------------------------
T ss_pred             CeEEEECcchhHHHHHHHhhcccceEEEEeecccccccc-----------------------------------------
Confidence            589999999999999999999999999999986321100                                         


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD  219 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad  219 (506)
                                         ....+.+.+.+.++++ |+.++.++ |+++.  ++.   +  ..+||++  +.||+||.|.
T Consensus        70 -------------------~~~~~~~~~~~~l~~~-GV~i~~~~~v~~~~--~~~---v--~l~dg~~--i~~D~vi~a~  120 (121)
T d1d7ya2          70 -------------------APATLADFVARYHAAQ-GVDLRFERSVTGSV--DGV---V--LLDDGTR--IAADMVVVGI  120 (121)
T ss_dssp             -------------------SCHHHHHHHHHHHHTT-TCEEEESCCEEEEE--TTE---E--EETTSCE--EECSEEEECS
T ss_pred             -------------------CCHHHHHHHHHHHHHC-CcEEEeCCEEEEEe--CCE---E--EECCCCE--EECCEEEEee
Confidence                               0112445666777777 78888885 77754  232   2  3578874  6799999998


Q ss_pred             C
Q 010623          220 G  220 (506)
Q Consensus       220 G  220 (506)
                      |
T Consensus       121 G  121 (121)
T d1d7ya2         121 G  121 (121)
T ss_dssp             C
T ss_pred             C
Confidence            8

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.74  E-value=6.2e-08  Score=77.62  Aligned_cols=96  Identities=15%  Similarity=0.230  Sum_probs=70.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -.++|||||+.|+-+|..|++.|.+|+|+|+++..-+.                                          
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~------------------------------------------   61 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS------------------------------------------   61 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS------------------------------------------
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchh------------------------------------------
Confidence            48999999999999999999999999999998632110                                          


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeE-EEEEEEe-CCccEEEEEcCeEEe
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTI-KGVQYKT-KAGEELTAYAPLTIV  217 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v-~~v~v~~-~~G~~~~i~a~~vV~  217 (506)
                                         ...++.+.+.+.+++. |++++.++ +++++.++++. ..++..+ .+++..+++||+|+.
T Consensus        62 -------------------~d~ei~~~l~~~l~~~-GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlv  121 (122)
T d1v59a2          62 -------------------MDGEVAKATQKFLKKQ-GLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLV  121 (122)
T ss_dssp             -------------------SCHHHHHHHHHHHHHT-TCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEE
T ss_pred             -------------------hhhhhHHHHHHHHHhc-cceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEE
Confidence                               0113445666667776 79999885 99998775543 2344443 245566789999987


Q ss_pred             e
Q 010623          218 C  218 (506)
Q Consensus       218 A  218 (506)
                      |
T Consensus       122 A  122 (122)
T d1v59a2         122 A  122 (122)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.74  E-value=7.4e-08  Score=76.48  Aligned_cols=93  Identities=14%  Similarity=0.191  Sum_probs=69.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||||+.|+-+|..|++.|.+|+|+|+.+..-+                  +.                       
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~------------------~~-----------------------   61 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR------------------KF-----------------------   61 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT------------------TS-----------------------
T ss_pred             CEEEEECCchHHHHHHHHHHhccccceeeehhccccc------------------cc-----------------------
Confidence            4799999999999999999999999999999853210                  00                       


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                          ..++.+.+.+.+++. |+.++.++ +++++..+++  .+++..++|+..+ .+|.||.|
T Consensus        62 --------------------d~~~~~~~~~~l~~~-gV~i~~~~~v~~i~~~~~~--~~~v~~~~G~~~~-~~D~Vi~A  116 (117)
T d1onfa2          62 --------------------DESVINVLENDMKKN-NINIVTFADVVEIKKVSDK--NLSIHLSDGRIYE-HFDHVIYC  116 (117)
T ss_dssp             --------------------CHHHHHHHHHHHHHT-TCEEECSCCEEEEEESSTT--CEEEEETTSCEEE-EESEEEEC
T ss_pred             --------------------cHHHHHHHHHHHHhC-CCEEEECCEEEEEEEcCCC--eEEEEECCCCEEE-eCCEEEEe
Confidence                                113555666677776 89999885 9999866543  3567788897543 47999976

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=7.7e-08  Score=78.87  Aligned_cols=95  Identities=20%  Similarity=0.253  Sum_probs=71.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHH----CCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEE
Q 010623           61 ADVIVVGAGVAGAALANTLAK----DGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFK  136 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~----~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  136 (506)
                      -+++|||||++|+-+|..|++    .|.+|+++|+.+..-.+.                                     
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~-------------------------------------   80 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKI-------------------------------------   80 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTT-------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCccc-------------------------------------
Confidence            479999999999999998864    599999999975321000                                     


Q ss_pred             CCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeE
Q 010623          137 DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLT  215 (506)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~v  215 (506)
                                             -..++...+.+.+++. |++++.++ |.++..++++   +.+..++|++  +.||.|
T Consensus        81 -----------------------~~~~~~~~~~~~l~~~-GV~~~~~~~V~~i~~~~~~---~~v~l~~G~~--i~aD~V  131 (137)
T d1m6ia2          81 -----------------------LPEYLSNWTMEKVRRE-GVKVMPNAIVQSVGVSSGK---LLIKLKDGRK--VETDHI  131 (137)
T ss_dssp             -----------------------SCHHHHHHHHHHHHTT-TCEEECSCCEEEEEEETTE---EEEEETTSCE--EEESEE
T ss_pred             -----------------------CCHHHHHHHHHHHHhC-CcEEEeCCEEEEEEecCCE---EEEEECCCCE--EECCEE
Confidence                                   0112445667777777 89999885 9999888774   5567788974  679999


Q ss_pred             EeecCC
Q 010623          216 IVCDGC  221 (506)
Q Consensus       216 V~AdG~  221 (506)
                      |.|.|.
T Consensus       132 i~A~Gv  137 (137)
T d1m6ia2         132 VAAVGL  137 (137)
T ss_dssp             EECCCE
T ss_pred             EEeecC
Confidence            999983

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.70  E-value=1.1e-08  Score=92.47  Aligned_cols=36  Identities=33%  Similarity=0.476  Sum_probs=33.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE   95 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~   95 (506)
                      +|||+||||||+|+++|+.+++.|.+|+|+|+.+..
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~   38 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPT   38 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            699999999999999999999999999999997643

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.69  E-value=1.2e-07  Score=75.34  Aligned_cols=95  Identities=15%  Similarity=0.220  Sum_probs=70.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC---CCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623           61 ADVIVVGAGVAGAALANTLAKD---GRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD  137 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~---G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  137 (506)
                      -+++|||||++|+-+|..|++.   |.+|+++|+.+..-+                  ++                    
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~------------------~~--------------------   60 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR------------------GF--------------------   60 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST------------------TS--------------------
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceecccccccc------------------cc--------------------
Confidence            4799999999999999876654   899999999753210                  00                    


Q ss_pred             CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623          138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI  216 (506)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV  216 (506)
                                             ..++.+.+.+.++++ ++.++.++ +++++.+++++.  .+..++|++  +.||.||
T Consensus        61 -----------------------d~~~~~~~~~~l~~~-GI~v~~~~~v~~i~~~~~g~~--~v~~~~g~~--i~~D~Vi  112 (117)
T d1feca2          61 -----------------------DSELRKQLTEQLRAN-GINVRTHENPAKVTKNADGTR--HVVFESGAE--ADYDVVM  112 (117)
T ss_dssp             -----------------------CHHHHHHHHHHHHHT-TEEEEETCCEEEEEECTTSCE--EEEETTSCE--EEESEEE
T ss_pred             -----------------------cchhhHHHHHHHhhC-cEEEEcCCEEEEEEECCCCEE--EEEECCCCE--EEcCEEE
Confidence                                   012445666667776 89999886 999987766533  455788874  6699999


Q ss_pred             eecCC
Q 010623          217 VCDGC  221 (506)
Q Consensus       217 ~AdG~  221 (506)
                      .|.|.
T Consensus       113 ~a~GR  117 (117)
T d1feca2         113 LAIGR  117 (117)
T ss_dssp             ECSCE
T ss_pred             EecCC
Confidence            99984

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=2.3e-07  Score=74.55  Aligned_cols=97  Identities=14%  Similarity=0.191  Sum_probs=70.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||||+.|+-+|..|++.|.+|+|+|+.+..-+.                  +                       
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~------------------~-----------------------   61 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS------------------F-----------------------   61 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT------------------S-----------------------
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccc------------------h-----------------------
Confidence            47999999999999999999999999999998532100                  0                       


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEE-eCCcc----EEEEEcCe
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYK-TKAGE----ELTAYAPL  214 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~-~~~G~----~~~i~a~~  214 (506)
                                          ..++.+.+.+.++++ |++++.++ ++++..+++++. +... ..+|.    .....+|+
T Consensus        62 --------------------d~~~~~~~~~~l~~~-Gv~i~~~~~v~~i~~~~~g~~-v~~~~~~~g~~~~~~~~~~~D~  119 (125)
T d3grsa2          62 --------------------DSMISTNCTEELENA-GVEVLKFSQVKEVKKTLSGLE-VSMVTAVPGRLPVMTMIPDVDC  119 (125)
T ss_dssp             --------------------CHHHHHHHHHHHHHT-TCEEETTEEEEEEEEETTEEE-EEEEECCTTSCCEEEEEEEESE
T ss_pred             --------------------hhHHHHHHHHHHHHC-CCEEEeCCEEEEEEEcCCeEE-EEEEEccCCcCcCccccccCCE
Confidence                                012444566666666 89999885 999998877543 3322 23442    23467999


Q ss_pred             EEeecC
Q 010623          215 TIVCDG  220 (506)
Q Consensus       215 vV~AdG  220 (506)
                      ||.|.|
T Consensus       120 vl~a~G  125 (125)
T d3grsa2         120 LLWAIG  125 (125)
T ss_dssp             EEECSC
T ss_pred             EEEEeC
Confidence            999987

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.67  E-value=6.6e-08  Score=77.62  Aligned_cols=95  Identities=17%  Similarity=0.296  Sum_probs=71.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+++|||||..|+-+|..+++.|.+|+|+|+.+...+.                  .                       
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~------------------~-----------------------   64 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT------------------M-----------------------   64 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT------------------S-----------------------
T ss_pred             CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCch------------------h-----------------------
Confidence            58999999999999999999999999999998642110                  0                       


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEee
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVC  218 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~A  218 (506)
                                          ..++...|.+.+++. |+.++.++ +.+++.+++++. +++.. .+|++.+++||+|+.|
T Consensus        65 --------------------d~~~~~~l~~~l~~~-GI~i~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~i~~D~vLvA  122 (123)
T d1dxla2          65 --------------------DAEIRKQFQRSLEKQ-GMKFKLKTKVVGVDTSGDGVK-LTVEPSAGGEQTIIEADVVLVS  122 (123)
T ss_dssp             --------------------CHHHHHHHHHHHHHS-SCCEECSEEEEEEECSSSSEE-EEEEESSSCCCEEEEESEEECC
T ss_pred             --------------------hhcchhhhhhhhhcc-cceEEcCCceEEEEEccCeEE-EEEEECCCCeEEEEEcCEEEEc
Confidence                                012445566666766 79999885 999988777654 55555 4566667889999876

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.65  E-value=1.3e-07  Score=75.78  Aligned_cols=91  Identities=26%  Similarity=0.399  Sum_probs=65.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+|+|||||+.|+-+|..|++.|.+|+|+|+.+..-.+.    +                                    
T Consensus        31 k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~----~------------------------------------   70 (123)
T d1nhpa2          31 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVY----L------------------------------------   70 (123)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT----C------------------------------------
T ss_pred             CEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccc----c------------------------------------
Confidence            489999999999999999999999999999985321000    0                                    


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC  218 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A  218 (506)
                                          ...+.+.+.+.+++. +++++.++ ++++..+ +++..+   ..||++  +.||+||.|
T Consensus        71 --------------------d~~~~~~~~~~l~~~-gv~~~~~~~v~~i~~~-~~~~~v---~~dg~~--i~~D~vi~a  122 (123)
T d1nhpa2          71 --------------------DKEFTDVLTEEMEAN-NITIATGETVERYEGD-GRVQKV---VTDKNA--YDADLVVVA  122 (123)
T ss_dssp             --------------------CHHHHHHHHHHHHTT-TEEEEESCCEEEEECS-SBCCEE---EESSCE--EECSEEEEC
T ss_pred             --------------------chhhHHHHHHHhhcC-CeEEEeCceEEEEEcC-CCEEEE---EeCCCE--EECCEEEEE
Confidence                                012445666677776 89999986 8888764 433322   346764  679999976

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.61  E-value=3.7e-08  Score=90.42  Aligned_cols=33  Identities=33%  Similarity=0.571  Sum_probs=31.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      |||+||||||+|+++|..+++.|.+|+|+|+..
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~~   34 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSR   34 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            899999999999999999999999999999863

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.59  E-value=2.8e-08  Score=85.01  Aligned_cols=38  Identities=32%  Similarity=0.394  Sum_probs=34.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE   95 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~   95 (506)
                      ....+|+|||||||||++|+.|+++|++|+|+|+.+..
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~   78 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI   78 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCcc
Confidence            34579999999999999999999999999999998653

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.59  E-value=9.9e-08  Score=82.42  Aligned_cols=32  Identities=41%  Similarity=0.549  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      |||+||||||+|+.+|+.+++.|.+|+|+|++
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            89999999999999999999999999999975

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.57  E-value=1.1e-08  Score=92.18  Aligned_cols=38  Identities=26%  Similarity=0.313  Sum_probs=34.8

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        57 ~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      |+.+|||+||||||+|+++|+.|++.|.+|+|+|+++.
T Consensus         2 m~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~   39 (233)
T d1v59a1           2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGK   39 (233)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence            44579999999999999999999999999999998753

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.57  E-value=8.6e-07  Score=70.72  Aligned_cols=97  Identities=20%  Similarity=0.242  Sum_probs=67.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR  140 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  140 (506)
                      -+++|||||+.|+-+|..|++.|.+|+|+++++.         +.          +.                       
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~---------l~----------~~-----------------------   58 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSIL---------LR----------GF-----------------------   58 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS---------ST----------TS-----------------------
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEechh---------hc----------cC-----------------------
Confidence            4799999999999999999999999999997521         00          00                       


Q ss_pred             eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeC---CeEEEEEEEeC-CccEEEEEcCeE
Q 010623          141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEK---GTIKGVQYKTK-AGEELTAYAPLT  215 (506)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~---~~v~~v~v~~~-~G~~~~i~a~~v  215 (506)
                                          ..++.+.+.+.+++. |++++.++ +++++..+   +....+++... +++.....+|.|
T Consensus        59 --------------------D~~~~~~l~~~l~~~-Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~v  117 (122)
T d1h6va2          59 --------------------DQDMANKIGEHMEEH-GIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTV  117 (122)
T ss_dssp             --------------------CHHHHHHHHHHHHHT-TEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEE
T ss_pred             --------------------CHHHHHHHHHHHHHC-CCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEE
Confidence                                012445667777777 89999885 88886432   22223444443 334445679999


Q ss_pred             EeecC
Q 010623          216 IVCDG  220 (506)
Q Consensus       216 V~AdG  220 (506)
                      +.|.|
T Consensus       118 l~AiG  122 (122)
T d1h6va2         118 LLAVG  122 (122)
T ss_dssp             ECCCC
T ss_pred             EEEeC
Confidence            99987

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.53  E-value=2.2e-07  Score=74.34  Aligned_cols=33  Identities=36%  Similarity=0.664  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA   65 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEeccc
Confidence            479999999999999999999999999999885

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.53  E-value=3.4e-08  Score=95.70  Aligned_cols=34  Identities=26%  Similarity=0.448  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ++||||||+|++|+.+|..|++.|++|+|+|+..
T Consensus         7 ~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   40 (370)
T d3coxa1           7 RVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGR   40 (370)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            6999999999999999999999999999999863

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=98.50  E-value=1.9e-07  Score=89.98  Aligned_cols=61  Identities=20%  Similarity=0.280  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeC---CccEEEEEc-CeEEeecCCccc
Q 010623          164 FVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTK---AGEELTAYA-PLTIVCDGCFSN  224 (506)
Q Consensus       164 l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~---~G~~~~i~a-~~vV~AdG~~S~  224 (506)
                      -.......+.++++.+++.++ |+++..+++++++|++.+.   ++...++.+ +-||.|.|+-..
T Consensus       192 ~~~~yl~~a~~r~nl~i~t~~~V~rI~~d~~ra~GV~~~~~~~~~~~~~~v~a~~eVILsAGai~S  257 (360)
T d1kdga1         192 PVATYLQTALARPNFTFKTNVMVSNVVRNGSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGT  257 (360)
T ss_dssp             HHHTHHHHHHTCTTEEEECSCCEEEEEEETTEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHH
T ss_pred             ccchhhhhhhcccccccccCcEEEEEEEeCCEEEEEEEEecccCcceEEEEEECCEEEEechhHhC
Confidence            334444556667789999885 9999999999999998653   344455665 448889996543

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.50  E-value=1.3e-07  Score=85.14  Aligned_cols=141  Identities=18%  Similarity=0.197  Sum_probs=72.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC---CcEEEEecCCCCCCcccccccccchH---HHHHHhCchhHHhhcccceecceEE
Q 010623           61 ADVIVVGAGVAGAALANTLAKDG---RRVHVIERDLSEPDRIVGELLQPGGY---LKLIELGLEDCVEQIDAQRVFGYAL  134 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G---~~v~vvE~~~~~~~~~~g~~l~~~~~---~~l~~~g~~~~~~~~~~~~~~~~~~  134 (506)
                      ++|+||||||+|+++|+.+++.|   .+|+|+|+...     .|..++...+   .++....+.+.+.+.   ...+..+
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~-----GG~cln~GciPsK~ll~~a~~~~~~~~~---~~~G~~i   73 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGI-----GGAAVLDDCVPSKTFIASTGLRTELRRA---PHLGFHI   73 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCT-----THHHHHTSHHHHHHHHHHHHHHHHHTTT---TTTTBC-
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCC-----CceeecccccccEEEEeecchhhhhhhh---hhcCCcc
Confidence            58999999999999999988765   57999998631     2222221111   112222222222211   1111111


Q ss_pred             EECCceeeeecCCcCCCCCcccccccc-h----HHHHHHHHHHHcCCCEEEEeceEEEEEee-CCeEEEEEEEeCCccEE
Q 010623          135 FKDGNRTQISYPLEKFHSDVAGRGFHN-G----RFVQRLREKAASLPNVRLEQGTVTSLLEE-KGTIKGVQYKTKAGEEL  208 (506)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~i~~-~----~l~~~L~~~~~~~~~v~i~~~~v~~~~~~-~~~v~~v~v~~~~G~~~  208 (506)
                      ..+.  ....++          ....| .    .+...+.+.+... ++++..++..-.... ......+.+...+|+..
T Consensus        74 ~~~~--~~~d~~----------~~~~~~~~v~~~~~~~~~~~~~~~-gV~vi~G~~~~~~~~~~~~~~~v~v~~~dg~~~  140 (233)
T d1xdia1          74 DFDD--AKISLP----------QIHARVKTLAAAQSADITAQLLSM-GVQVIAGRGELIDSTPGLARHRIKATAADGSTS  140 (233)
T ss_dssp             -------CBCHH----------HHHHHHHHHHHHHHHHHHHHHHHT-TCEEEESEEEECCSSSCCSSEEEEEECTTSCEE
T ss_pred             cccC--ceeeee----------eeccccceeeeeeecceehhhccc-ceeEEECcccccccccccccceEEEEecCCcee
Confidence            0000  000000          01111 1    1222344445555 788887753322221 11112366777889888


Q ss_pred             EEEcCeEEeecCCc
Q 010623          209 TAYAPLTIVCDGCF  222 (506)
Q Consensus       209 ~i~a~~vV~AdG~~  222 (506)
                      ++++|.+|.|+|..
T Consensus       141 ~i~ad~viiAtG~~  154 (233)
T d1xdia1         141 EHEADVVLVATGAS  154 (233)
T ss_dssp             EEEESEEEECCCEE
T ss_pred             eeecceeeeecCcc
Confidence            89999999999964

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.50  E-value=3.9e-09  Score=95.88  Aligned_cols=31  Identities=29%  Similarity=0.302  Sum_probs=27.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEec
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIER   91 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~   91 (506)
                      ++|+|||||++||++|+.|+++|++|+++|+
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~   31 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLD   31 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCE
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceEEee
Confidence            3699999999999999999999987666665

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.50  E-value=3.1e-08  Score=89.10  Aligned_cols=36  Identities=33%  Similarity=0.523  Sum_probs=33.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      .+|||+||||||+||++|+.|++.|.+|+|+|+.+.
T Consensus         5 ~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~   40 (229)
T d1ojta1           5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKT   40 (229)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            469999999999999999999999999999999753

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.49  E-value=9.4e-07  Score=69.97  Aligned_cols=92  Identities=11%  Similarity=0.129  Sum_probs=66.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC---CCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623           61 ADVIVVGAGVAGAALANTLAKD---GRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD  137 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~---G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  137 (506)
                      -+++|||||+.|+-+|..|++.   |.+|+|+|+.+..-+.                  .                    
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~------------------~--------------------   62 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRG------------------F--------------------   62 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTT------------------S--------------------
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcc------------------c--------------------
Confidence            4899999999999999887765   4579999997531100                  0                    


Q ss_pred             CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623          138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI  216 (506)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV  216 (506)
                                             ...+.+.+.+.++++ |++++.++ +++++..+++.  +.+..++|++  ++||.||
T Consensus        63 -----------------------d~~~~~~l~~~l~~~-GV~v~~~~~v~~ie~~~~~~--~~v~~~~G~~--i~~D~Vi  114 (117)
T d1aoga2          63 -----------------------DHTLREELTKQLTAN-GIQILTKENPAKVELNADGS--KSVTFESGKK--MDFDLVM  114 (117)
T ss_dssp             -----------------------CHHHHHHHHHHHHHT-TCEEEESCCEEEEEECTTSC--EEEEETTSCE--EEESEEE
T ss_pred             -----------------------chHHHHHHHHHHHhc-CcEEEcCCEEEEEEEcCCCe--EEEEECCCcE--EEeCEEE
Confidence                                   112445666677776 89999885 99998665432  4466788874  6699999


Q ss_pred             ee
Q 010623          217 VC  218 (506)
Q Consensus       217 ~A  218 (506)
                      .|
T Consensus       115 ~A  116 (117)
T d1aoga2         115 MA  116 (117)
T ss_dssp             EC
T ss_pred             Ee
Confidence            76

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=4.8e-08  Score=93.49  Aligned_cols=39  Identities=31%  Similarity=0.396  Sum_probs=35.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD   97 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~   97 (506)
                      ++.+|+|||||++||+||+.|+++|++|+|+|+++....
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GG   42 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG   42 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcc
Confidence            357899999999999999999999999999999876554

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.46  E-value=3e-07  Score=88.72  Aligned_cols=33  Identities=24%  Similarity=0.373  Sum_probs=31.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .||||||+|++|+.+|..|++.|++|+|+|+..
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   35 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence            699999999999999999999999999999964

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=5.6e-08  Score=86.53  Aligned_cols=34  Identities=32%  Similarity=0.438  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +|||+||||||+|+++|..|++.|.+|+|+|++.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~   35 (217)
T d1gesa1           2 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE   35 (217)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            6999999999999999999999999999999863

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.40  E-value=6.4e-08  Score=90.71  Aligned_cols=37  Identities=41%  Similarity=0.501  Sum_probs=34.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD   97 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~   97 (506)
                      +||+|||||++||++|..|+++|.+|+|+|+++....
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG   38 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGG   38 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSG
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCccc
Confidence            6999999999999999999999999999999976543

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=98.39  E-value=8.5e-07  Score=86.06  Aligned_cols=55  Identities=22%  Similarity=0.337  Sum_probs=42.2

Q ss_pred             HHHHHcCCCEEEEece-EEEEEeeCC----eEEEEEEEeCCccEEEEEcCe-EEeecCCcc
Q 010623          169 REKAASLPNVRLEQGT-VTSLLEEKG----TIKGVQYKTKAGEELTAYAPL-TIVCDGCFS  223 (506)
Q Consensus       169 ~~~~~~~~~v~i~~~~-v~~~~~~~~----~v~~v~v~~~~G~~~~i~a~~-vV~AdG~~S  223 (506)
                      ...+.+.++.++..++ |+++..+++    ++++|++.+.+|++.+++|+- ||.|.|+..
T Consensus       231 ~~p~~~~~nl~i~t~~~V~rI~~~~~~~~~ra~GV~~~~~~g~~~~v~A~keVILsAGAi~  291 (385)
T d1cf3a1         231 LLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAV  291 (385)
T ss_dssp             TGGGTTCTTEEEEESCEEEEEEEECSSSSCEEEEEEEEEETTEEEEEEEEEEEEECSCTTT
T ss_pred             cCchhcCCcccccCCceEEEEEEcCCCceeEEEEEEEEcCCCCEEEEEeCCEEEEcCchhh
Confidence            3334456789998885 999886654    788999888889888899975 888988644

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.39  E-value=9.5e-08  Score=89.72  Aligned_cols=36  Identities=39%  Similarity=0.469  Sum_probs=33.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD   97 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~   97 (506)
                      +|+||||||+||+||+.|+++|++|+|+|+++....
T Consensus         3 kV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG   38 (373)
T d1seza1           3 RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGG   38 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcC
Confidence            599999999999999999999999999999876543

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.37  E-value=1.2e-07  Score=84.63  Aligned_cols=34  Identities=32%  Similarity=0.538  Sum_probs=32.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ++||+||||||+|+++|..+++.|.+|+|+||..
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~   36 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN   36 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence            6999999999999999999999999999999974

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.37  E-value=1e-07  Score=85.10  Aligned_cols=36  Identities=17%  Similarity=0.314  Sum_probs=33.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +.++|++||||||+|+.+|..+++.|.+|+|+|++.
T Consensus         3 ~~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~   38 (220)
T d1lvla1           3 TIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA   38 (220)
T ss_dssp             CEECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            457999999999999999999999999999999874

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.37  E-value=1.3e-07  Score=91.42  Aligned_cols=39  Identities=26%  Similarity=0.440  Sum_probs=35.5

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623           57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE   95 (506)
Q Consensus        57 ~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~   95 (506)
                      |+.+|||||||+|++|+++|..|++.|++|+|+|+....
T Consensus         1 md~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~   39 (379)
T d2f5va1           1 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID   39 (379)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             CCCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence            456899999999999999999999999999999997543

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.36  E-value=9.5e-07  Score=77.10  Aligned_cols=110  Identities=20%  Similarity=0.187  Sum_probs=68.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623           61 ADVIVVGAGVAGAALANTLAKD--GRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG  138 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (506)
                      ++|+|||||++|+.+|..|++.  +.+|+++||++..+.       .+.++..+-.-.+.    +.              
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~-------~~~~~~~~l~~~~~----~~--------------   55 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISF-------LSAGMQLYLEGKVK----DV--------------   55 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSB-------CGGGHHHHHTTSSC----CG--------------
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccc-------cccCcchhhccccc----ch--------------
Confidence            3699999999999999999987  458999999864321       11111111000000    00              


Q ss_pred             ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEE
Q 010623          139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTI  216 (506)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV  216 (506)
                                             ..+.....+.+.+. +++++.++ |++++.+++.   +++.+ .+|++.++.+|.+|
T Consensus        56 -----------------------~~~~~~~~~~l~~~-gi~v~~~~~V~~i~~~~~~---v~~~~~~~g~~~~~~~D~li  108 (198)
T d1nhpa1          56 -----------------------NSVRYMTGEKMESR-GVNVFSNTEITAIQPKEHQ---VTVKDLVSGEERVENYDKLI  108 (198)
T ss_dssp             -----------------------GGSBSCCHHHHHHT-TCEEEETEEEEEEETTTTE---EEEEETTTCCEEEEECSEEE
T ss_pred             -----------------------HHHHHhhHHHHHHC-CcEEEEeeceeeEeecccc---ceeeecccccccccccceee
Confidence                                   00000011223334 78888775 9999877764   55544 67877888999999


Q ss_pred             eecCCc
Q 010623          217 VCDGCF  222 (506)
Q Consensus       217 ~AdG~~  222 (506)
                      .|.|..
T Consensus       109 ~a~G~~  114 (198)
T d1nhpa1         109 ISPGAV  114 (198)
T ss_dssp             ECCCEE
T ss_pred             Eeecce
Confidence            999964

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=98.36  E-value=1.1e-06  Score=85.53  Aligned_cols=35  Identities=31%  Similarity=0.542  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC-CcEEEEecCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDG-RRVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G-~~v~vvE~~~~   94 (506)
                      +||+||||||.+|+.+|..|++.| ++|+|+|+.+.
T Consensus        24 tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             eeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            699999999999999999999998 79999999863

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.8e-07  Score=83.36  Aligned_cols=34  Identities=35%  Similarity=0.483  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +|||+||||||+|+++|..+++.|.+|+|+|+..
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~   36 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVVESHK   36 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            5999999999999999999999999999999864

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.32  E-value=2.3e-07  Score=80.81  Aligned_cols=34  Identities=29%  Similarity=0.435  Sum_probs=31.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDLS   94 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~~   94 (506)
                      -+|+||||||+||++|..|+++|+ +|+|+||.+.
T Consensus         5 ~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           5 AKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            589999999999999999999999 5999999864

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=4.4e-07  Score=80.34  Aligned_cols=37  Identities=22%  Similarity=0.344  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEecCCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGR--RVHVIERDLSE   95 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~~~   95 (506)
                      .+++++|||||++|+.+|..|+++|.  +|+++++.+..
T Consensus         3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~   41 (213)
T d1m6ia1           3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   41 (213)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence            46899999999999999999998876  69999987644

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.25  E-value=5.8e-07  Score=80.76  Aligned_cols=38  Identities=29%  Similarity=0.447  Sum_probs=34.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE   95 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~   95 (506)
                      +..-+|+||||||+|+++|..|+++|++|+|+|+.+..
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~   84 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI   84 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeecccc
Confidence            35689999999999999999999999999999998643

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.24  E-value=2.1e-07  Score=83.78  Aligned_cols=35  Identities=23%  Similarity=0.232  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC-------CcEEEEecCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDG-------RRVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G-------~~v~vvE~~~~   94 (506)
                      +++|+|||||||||+||+.|+++|       ++|+|+||.+.
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            479999999999999999999988       57999999864

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.19  E-value=5.6e-07  Score=84.68  Aligned_cols=37  Identities=32%  Similarity=0.638  Sum_probs=33.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD   97 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~   97 (506)
                      -.|+|||||++||++|..|++.|++|+|+|+++....
T Consensus         3 KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG   39 (314)
T d2bi7a1           3 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG   39 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSG
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcC
Confidence            4799999999999999999999999999999976543

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.19  E-value=2.2e-06  Score=73.69  Aligned_cols=35  Identities=26%  Similarity=0.359  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      +.+|+|||||++|+-+|..|++.|.++.|++..+.
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~   37 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDE   37 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESS
T ss_pred             CCCEEEECccHHHHHHHHHHHhcCCceEEEEEecc
Confidence            45799999999999999999999998888876543

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.18  E-value=7.7e-07  Score=83.67  Aligned_cols=39  Identities=36%  Similarity=0.528  Sum_probs=34.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKD--GRRVHVIERDLSEPD   97 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~~~~~   97 (506)
                      .++||+||||||+||++|+.|+++  |++|+|+|+++....
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~   89 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGG   89 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcc
Confidence            468999999999999999999965  999999999876544

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.11  E-value=9e-07  Score=79.22  Aligned_cols=35  Identities=34%  Similarity=0.475  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKD--GRRVHVIERDLSE   95 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~~~   95 (506)
                      .+|+|||||||||+||..|++.  |++|+|+|+.+.+
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~   38 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   38 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            5899999999999999999875  7899999998643

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=98.07  E-value=1.9e-06  Score=73.64  Aligned_cols=32  Identities=34%  Similarity=0.504  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC--CcEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDG--RRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G--~~v~vvE~~~   93 (506)
                      +|+|||||++|+.+|..|++.|  .+|+|+|+++
T Consensus         4 rivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             cEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            7999999999999999999987  5899999885

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.06  E-value=9.1e-07  Score=79.75  Aligned_cols=36  Identities=31%  Similarity=0.367  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGR-RVHVIERDLS   94 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~~   94 (506)
                      .+|||+||||||||+++|+.+++.|. +|+|+|+...
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~   38 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKH   38 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEecc
Confidence            47999999999999999999999986 5999998754

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.05  E-value=1.7e-06  Score=77.54  Aligned_cols=35  Identities=34%  Similarity=0.386  Sum_probs=31.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           59 FDADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        59 ~~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      +.|||+||||||+|+++|..+++.|. +|+|+|+..
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~   37 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQM   37 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeec
Confidence            36999999999999999999999886 688888763

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.04  E-value=2.2e-06  Score=78.25  Aligned_cols=39  Identities=28%  Similarity=0.305  Sum_probs=35.4

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623           57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE   95 (506)
Q Consensus        57 ~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~   95 (506)
                      .+.+|||+||||||+|+.+|+.|++.|.+|+|+|+.+..
T Consensus        39 ~~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~l   77 (261)
T d1mo9a1          39 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFL   77 (261)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcc
Confidence            445799999999999999999999999999999998643

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.86  E-value=0.00016  Score=57.31  Aligned_cols=94  Identities=24%  Similarity=0.262  Sum_probs=73.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||-+.+-.|+.|++..-+|+|+-|.+....                                          
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~------------------------------------------   67 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA------------------------------------------   67 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS------------------------------------------
T ss_pred             CceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccc------------------------------------------
Confidence            46999999999999999999999999999988753110                                          


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEe
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIV  217 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~  217 (506)
                                               .+.+.+.+.+.+++++++++ ++++.-+++.+.++++.+ .+|++.++.+|.|..
T Consensus        68 -------------------------~~~~~~~~~~~~~I~v~~~~~v~~i~G~~~~v~~v~l~~~~tge~~~l~vdgvFv  122 (126)
T d1fl2a2          68 -------------------------DQVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFV  122 (126)
T ss_dssp             -------------------------CHHHHHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEE
T ss_pred             -------------------------ccccccccccccceeEEcCcceEEEEccccceeeEEEEECCCCCEEEEECCEEEE
Confidence                                     01233455566789999885 889988777788899887 478888888998887


Q ss_pred             ecC
Q 010623          218 CDG  220 (506)
Q Consensus       218 AdG  220 (506)
                      +=|
T Consensus       123 ~IG  125 (126)
T d1fl2a2         123 QIG  125 (126)
T ss_dssp             CSC
T ss_pred             EeC
Confidence            755

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.80  E-value=1.9e-05  Score=66.30  Aligned_cols=32  Identities=34%  Similarity=0.584  Sum_probs=28.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      +|+|||||++|+-+|..|++ +.+|+|+|+.+.
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~   33 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPV   33 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSS
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEecccc
Confidence            69999999999999999975 779999998754

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.64  E-value=7.1e-06  Score=78.24  Aligned_cols=36  Identities=36%  Similarity=0.527  Sum_probs=32.6

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        57 ~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ++.+||+||||||++|+.+|..|++. ++|+|+|+.+
T Consensus        23 ~~~~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~   58 (351)
T d1ju2a1          23 LEGSYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGS   58 (351)
T ss_dssp             SEEEEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSB
T ss_pred             ccCCccEEEECccHHHHHHHHHhcCC-CCEEEEecCC
Confidence            34569999999999999999999986 9999999985

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.63  E-value=9.3e-05  Score=62.90  Aligned_cols=35  Identities=26%  Similarity=0.377  Sum_probs=31.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE   95 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~   95 (506)
                      -+|+|||||++|+-+|..|++.|.+|+|++..+.+
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~   38 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT   38 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCceEEEEecCcc
Confidence            48999999999999999999999999999887643

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.62  E-value=0.0002  Score=59.17  Aligned_cols=35  Identities=20%  Similarity=0.332  Sum_probs=30.7

Q ss_pred             CCCcEEEE--CCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           59 FDADVIVV--GAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        59 ~~~dVvIV--GgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..-.|+|+  |||..|+.+|..|+++|.+|+|+|+.+
T Consensus        38 ~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~   74 (156)
T d1djqa2          38 IGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH   74 (156)
T ss_dssp             CCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCC
Confidence            34566666  999999999999999999999999975

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.60  E-value=0.00065  Score=55.63  Aligned_cols=33  Identities=33%  Similarity=0.403  Sum_probs=29.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCc-EEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRR-VHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~-v~vvE~~~   93 (506)
                      -+|+|||||-+|+=+|..|.++|.+ |++++|++
T Consensus        46 ~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          46 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            4799999999999999999999975 88998874

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=0.00097  Score=52.59  Aligned_cols=97  Identities=20%  Similarity=0.256  Sum_probs=69.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||-+.+-.|+.|++..-+|+++-|++.....                                         
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~~~-----------------------------------------   65 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAE-----------------------------------------   65 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCCC-----------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccccch-----------------------------------------
Confidence            359999999999999999999999999999887531100                                         


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeC-Ccc-EEEEEcCeEE
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTK-AGE-ELTAYAPLTI  216 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~-~G~-~~~i~a~~vV  216 (506)
                                            ..+.+.+.+.... +++.++.++ +.++.-++.++.++++.+. +++ ..++.+|.|+
T Consensus        66 ----------------------~~~~~~~~~~~~~-~~i~~~~~~~v~~i~G~~~~v~~v~l~~~~~~e~~~~l~~dgvF  122 (126)
T d1trba2          66 ----------------------KILIKRLMDKVEN-GNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLF  122 (126)
T ss_dssp             ----------------------HHHHHHHHHHHHT-SSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEE
T ss_pred             ----------------------hHHHHHHHHhhcc-cceeEecceEEEEEECCCCceEEEEEEECCCCceEEEEECCEEE
Confidence                                  0122333443333 478888775 8888887777888998863 333 3567788887


Q ss_pred             eecC
Q 010623          217 VCDG  220 (506)
Q Consensus       217 ~AdG  220 (506)
                      .+-|
T Consensus       123 v~iG  126 (126)
T d1trba2         123 VAIG  126 (126)
T ss_dssp             ECSC
T ss_pred             EEeC
Confidence            7654

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.43  E-value=0.0014  Score=51.87  Aligned_cols=92  Identities=20%  Similarity=0.263  Sum_probs=69.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN  139 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  139 (506)
                      .-+|+|||||-+.+-.|+.|++.--+|+++-|++....                                          
T Consensus        34 gk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra------------------------------------------   71 (130)
T d1vdca2          34 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA------------------------------------------   71 (130)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS------------------------------------------
T ss_pred             CCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccccc------------------------------------------
Confidence            46999999999999999999999999999988753110                                          


Q ss_pred             eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeC--CeEEEEEEEe-CCccEEEEEcCeE
Q 010623          140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEK--GTIKGVQYKT-KAGEELTAYAPLT  215 (506)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~--~~v~~v~v~~-~~G~~~~i~a~~v  215 (506)
                                               .+.+.+.+.+.+++++++++ +.++.-++  +.+.++++++ .+|+..++.+|.|
T Consensus        72 -------------------------~~~~~~~l~~~~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGv  126 (130)
T d1vdca2          72 -------------------------SKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGL  126 (130)
T ss_dssp             -------------------------CHHHHHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEE
T ss_pred             -------------------------chhhhhccccCCceEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEE
Confidence                                     01334555667799999885 88888764  4577788877 5788778878776


Q ss_pred             Eee
Q 010623          216 IVC  218 (506)
Q Consensus       216 V~A  218 (506)
                      ..|
T Consensus       127 FVa  129 (130)
T d1vdca2         127 FFA  129 (130)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            653

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=0.00011  Score=61.24  Aligned_cols=27  Identities=26%  Similarity=0.401  Sum_probs=24.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcE
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRV   86 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v   86 (506)
                      .-+|+|||||.+|+-+|..+++.|.++
T Consensus        29 gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          29 GNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             CCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            358999999999999999999999754

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.12  E-value=0.00025  Score=52.81  Aligned_cols=35  Identities=17%  Similarity=0.469  Sum_probs=32.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE   95 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~   95 (506)
                      -+|+|+|.|.+|+++|..|+++|.+|+++|.+..+
T Consensus         6 K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~   40 (93)
T d2jfga1           6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (93)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSC
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCc
Confidence            37999999999999999999999999999987643

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.75  E-value=0.0006  Score=57.65  Aligned_cols=33  Identities=33%  Similarity=0.404  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      -.|.|||+|..|+++|..|+++|++|.+++|++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            368999999999999999999999999999974

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.72  E-value=0.0006  Score=54.40  Aligned_cols=34  Identities=29%  Similarity=0.540  Sum_probs=31.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      +.|+|+|+|..|..+|..|.+.|++|+++|++++
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~   34 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD   34 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChh
Confidence            3699999999999999999999999999999853

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.66  E-value=0.00058  Score=57.44  Aligned_cols=33  Identities=27%  Similarity=0.470  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      -.|+|||||-+|..+|..|+++|++|+|+||+.
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~   35 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL   35 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence            379999999999999999999999999999985

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.0012  Score=54.66  Aligned_cols=34  Identities=26%  Similarity=0.365  Sum_probs=31.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      ++|+|+|+|..|...|..|++.|++|++++|.+.
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            4699999999999999999999999999999864

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.32  E-value=0.0021  Score=53.42  Aligned_cols=34  Identities=32%  Similarity=0.369  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..+|+|+|||.+|+.+|..+.+.|.+|.++|.++
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~   62 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA   62 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence            4799999999999999999999999999999885

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.31  E-value=0.0022  Score=52.55  Aligned_cols=34  Identities=24%  Similarity=0.509  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +.+|+|+|+|.+|+.++..+.+.|.+|.++|.+.
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            4899999999999999999999999999999874

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.09  E-value=0.002  Score=51.30  Aligned_cols=32  Identities=22%  Similarity=0.429  Sum_probs=30.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +++|||+|..|..+|..|.+.|++|+++|+++
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~   33 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   33 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence            58999999999999999999999999999985

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.0025  Score=54.21  Aligned_cols=33  Identities=30%  Similarity=0.556  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      -.|.|||+|..|...|..++++|++|+++|+++
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   37 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            379999999999999999999999999999885

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.77  E-value=0.0035  Score=52.95  Aligned_cols=32  Identities=25%  Similarity=0.434  Sum_probs=30.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .|.|||+|..|...|..++++|++|+++|+++
T Consensus         6 ~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           6 QAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             SEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            69999999999999999999999999999974

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.72  E-value=0.0037  Score=53.62  Aligned_cols=32  Identities=25%  Similarity=0.389  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .|.|||.|-.|+.+|..|++.|++|+.+|.+.
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            58999999999999999999999999999874

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=95.44  E-value=0.0066  Score=48.86  Aligned_cols=37  Identities=24%  Similarity=0.451  Sum_probs=32.3

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEecCC
Q 010623           57 CPFDADVIVVGAGVAGAALANTLAKDGR--RVHVIERDL   93 (506)
Q Consensus        57 ~~~~~dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~   93 (506)
                      |+.+.+|.|||+|-.|.++|+.|+..|+  +++++|++.
T Consensus         2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            3446799999999999999999999885  799999874

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.37  E-value=0.11  Score=44.60  Aligned_cols=33  Identities=18%  Similarity=0.291  Sum_probs=28.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--------------------CC-cEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKD--------------------GR-RVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~--------------------G~-~v~vvE~~~   93 (506)
                      -+|+|||+|-+++=+|..|.+.                    |+ +|.++.|+.
T Consensus        40 k~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg   93 (225)
T d1cjca1          40 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG   93 (225)
T ss_dssp             SEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred             ceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcC
Confidence            5899999999999999999883                    65 899998874

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=95.25  E-value=0.006  Score=51.57  Aligned_cols=33  Identities=36%  Similarity=0.471  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .+|+|+|||--|.++|..|++.|++|+++.|++
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            479999999999999999999999999999874

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.13  E-value=0.011  Score=45.10  Aligned_cols=33  Identities=27%  Similarity=0.403  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      -.|+|||||.+|..-|..|.+.|.+|+++....
T Consensus        13 k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~   45 (113)
T d1pjqa1          13 RDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (113)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            589999999999999999999999999998653

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.05  E-value=0.011  Score=48.70  Aligned_cols=32  Identities=34%  Similarity=0.528  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +|.|||.|..|.+.|..|+++|++|+++||++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            58999999999999999999999999999873

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=94.98  E-value=0.012  Score=47.65  Aligned_cols=36  Identities=17%  Similarity=0.192  Sum_probs=31.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      +++..|.|||+|-.|.++|+.|+..|+ +++++|.++
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            346899999999999999999999886 899999775

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.90  E-value=0.012  Score=48.53  Aligned_cols=33  Identities=27%  Similarity=0.295  Sum_probs=30.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      -.|+|+|+|+.|+.++..++..|.+|+++|+++
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            379999999999999999999999999999874

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.80  E-value=0.013  Score=48.42  Aligned_cols=33  Identities=27%  Similarity=0.224  Sum_probs=30.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      -.|+|+|+|+.|+.++..++..|.+|+++++++
T Consensus        29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~   61 (168)
T d1piwa2          29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSS   61 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred             CEEEEECCCCcchhHHHHhhhccccccccccch
Confidence            479999999999999999999999999999875

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.76  E-value=0.011  Score=49.50  Aligned_cols=32  Identities=31%  Similarity=0.534  Sum_probs=29.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      ++|.|||+|..|.++|..|++.|++|.++.|.
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            46899999999999999999999999999774

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.55  E-value=0.028  Score=54.11  Aligned_cols=37  Identities=32%  Similarity=0.569  Sum_probs=34.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      +.++||||+|-|..=..+|.+|++.|.+|+-+||++.
T Consensus         4 P~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~y   40 (491)
T d1vg0a1           4 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSY   40 (491)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCc
Confidence            4579999999999999999999999999999999965

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.55  E-value=0.024  Score=42.98  Aligned_cols=38  Identities=24%  Similarity=0.403  Sum_probs=33.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD   97 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~   97 (506)
                      .+.|.|+|||--|..+|.++.+.|++|.++|.++..+.
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~PA   48 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPA   48 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCGG
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCCch
Confidence            46899999999999999999999999999999865433

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.52  E-value=0.0085  Score=48.50  Aligned_cols=33  Identities=21%  Similarity=0.488  Sum_probs=30.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      .-.|+|||||..|+.-|..|.+.|.+|+|+...
T Consensus        13 gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            358999999999999999999999999999654

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.49  E-value=0.019  Score=47.08  Aligned_cols=33  Identities=24%  Similarity=0.187  Sum_probs=30.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      -.|+|+|+|+.|+.++..++..|.+|+++++++
T Consensus        29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            379999999999999999999999999998874

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.39  E-value=0.025  Score=46.58  Aligned_cols=32  Identities=28%  Similarity=0.315  Sum_probs=29.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      .|+|+|+|+.|+.++..+...|. +|+++|+++
T Consensus        29 ~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          29 KVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             EEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            69999999999999999999998 799999874

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=94.32  E-value=0.021  Score=46.09  Aligned_cols=33  Identities=24%  Similarity=0.521  Sum_probs=30.9

Q ss_pred             CcEEEEC-CCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVG-AGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVG-gG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      -.|.||| .|..|.+.|..|+++|++|.++|++.
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            4899999 69999999999999999999999875

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.30  E-value=0.18  Score=42.96  Aligned_cols=33  Identities=27%  Similarity=0.393  Sum_probs=28.1

Q ss_pred             CcEEEECCCHHHHHHHHHHH--------------------HCCC-cEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLA--------------------KDGR-RVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La--------------------~~G~-~v~vvE~~~   93 (506)
                      -+|+|||+|-+++=+|..|.                    +.|+ +|.++-|+.
T Consensus        40 k~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg   93 (216)
T d1lqta1          40 ARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG   93 (216)
T ss_dssp             SEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             ceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence            58999999999999998877                    5676 688888874

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.23  E-value=0.016  Score=48.71  Aligned_cols=32  Identities=34%  Similarity=0.398  Sum_probs=29.5

Q ss_pred             cEEEE-CCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVV-GAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIV-GgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +|.|| |+|..|.++|..|++.|++|++..|++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999 669999999999999999999999874

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=94.08  E-value=0.049  Score=44.15  Aligned_cols=34  Identities=21%  Similarity=0.305  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR--RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~   93 (506)
                      +..|.|||+|-.|.++|+.|...|+  +++|+|.++
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            4699999999999999999999998  899999873

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=93.96  E-value=0.019  Score=47.88  Aligned_cols=33  Identities=27%  Similarity=0.231  Sum_probs=29.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      -.|+|+|+|+.|+.+...+...|. +|+++|+++
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP   63 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             CEEEEECCCccchhheeccccccccccccccccc
Confidence            379999999999999999999998 799999874

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=93.82  E-value=0.035  Score=44.75  Aligned_cols=33  Identities=24%  Similarity=0.284  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      -.|+|+|.|..|..++..|.+.|.+|+++|.++
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            369999999999999999999999999999875

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=93.69  E-value=0.028  Score=46.14  Aligned_cols=33  Identities=24%  Similarity=0.146  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      -.|+|+|+|+.|+.++..+...|.++++++..+
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~   64 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE   64 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CEEEEeccchHHHHHHHHhhcccccchhhccch
Confidence            479999999999999999999999999998864

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.59  E-value=0.048  Score=44.16  Aligned_cols=34  Identities=26%  Similarity=0.438  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR--RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~   93 (506)
                      +..|.|||+|-.|.++|+.|...|+  +++|+|.++
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            4589999999999999999999987  799999763

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.36  E-value=0.027  Score=47.59  Aligned_cols=32  Identities=22%  Similarity=0.319  Sum_probs=28.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +.|.|||.|-.||.+|..++ .|++|+.+|-++
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~   32 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILP   32 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCH
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCH
Confidence            35899999999999999887 599999999874

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=93.35  E-value=0.046  Score=45.23  Aligned_cols=34  Identities=26%  Similarity=0.452  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +.+|-|||-|..|...|..|.++|++|.+++|.+
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            3589999999999999999999999999999985

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.34  E-value=0.03  Score=42.13  Aligned_cols=34  Identities=18%  Similarity=0.128  Sum_probs=29.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .-+|+|||+|.+|.-.|..|++.+-+++++-+++
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            3689999999999999999999988888777664

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.25  E-value=0.053  Score=43.47  Aligned_cols=34  Identities=21%  Similarity=0.431  Sum_probs=30.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      +.+|.|||+|-.|.++|+.|.+.++ +++|+|.++
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            3689999999999999999999886 899999864

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=93.24  E-value=0.04  Score=45.29  Aligned_cols=33  Identities=21%  Similarity=0.317  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      -+|+|+|+|-++-++++.|.+.|.++.|+.|..
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          19 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            489999999999999999999999999998873

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=93.18  E-value=0.05  Score=43.22  Aligned_cols=32  Identities=28%  Similarity=0.367  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC--cEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGR--RVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~   93 (506)
                      +|.|||+|-.|.++|+.|+..|.  +++|+|.++
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~   35 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence            68999999999999999999985  899999875

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.09  E-value=0.05  Score=43.59  Aligned_cols=34  Identities=32%  Similarity=0.557  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR--RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~   93 (506)
                      ..+|.|||+|-.|.++|+.|+..|+  +++|+|..+
T Consensus         6 ~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            4689999999999999999999886  799999764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=93.07  E-value=0.059  Score=44.46  Aligned_cols=33  Identities=21%  Similarity=0.296  Sum_probs=29.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      -.|+|+|+|+.|++++..++..|. +|+++|+++
T Consensus        29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             CEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence            479999999999999999999997 799998763

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=93.01  E-value=0.043  Score=43.65  Aligned_cols=32  Identities=22%  Similarity=0.360  Sum_probs=29.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      .|.|||+|-.|.++|+.|+..++ +++++|..+
T Consensus         3 KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           3 KISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            78999999999999999999886 899999764

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.71  E-value=0.049  Score=43.40  Aligned_cols=32  Identities=38%  Similarity=0.497  Sum_probs=28.9

Q ss_pred             cEEEECC-CHHHHHHHHHHHHCCC--cEEEEecCC
Q 010623           62 DVIVVGA-GVAGAALANTLAKDGR--RVHVIERDL   93 (506)
Q Consensus        62 dVvIVGg-G~aGl~~A~~La~~G~--~v~vvE~~~   93 (506)
                      +|.|||| |-.|.++|+.|+.+|+  ++.|+|..+
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            6999996 9999999999999996  899999863

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.64  E-value=0.049  Score=45.05  Aligned_cols=32  Identities=22%  Similarity=0.318  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      -|+|+|+|+.|+.+...++..|. +|+++|.++
T Consensus        32 tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~   64 (176)
T d1d1ta2          32 TCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNK   64 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceEEEecCcH
Confidence            59999999999999999999995 799999874

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=92.44  E-value=0.072  Score=42.27  Aligned_cols=33  Identities=27%  Similarity=0.422  Sum_probs=29.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC--cEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR--RVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~   93 (506)
                      .+|.|||+|-.|.++|+.|..+|+  +++|+|.++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            479999999999999999999997  799999763

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.42  E-value=0.046  Score=38.18  Aligned_cols=33  Identities=27%  Similarity=0.282  Sum_probs=30.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      .|.|+|||--|..++.+..+.|++|.+++.++.
T Consensus         3 ~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           3 QVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             EEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            589999999999999999999999999998754

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.32  E-value=0.055  Score=44.16  Aligned_cols=33  Identities=18%  Similarity=0.119  Sum_probs=29.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      -.|+|.|+|+.|++++..++..|.+|++++.++
T Consensus        29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            369999999999999999999999999998763

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=92.30  E-value=0.082  Score=41.88  Aligned_cols=34  Identities=29%  Similarity=0.382  Sum_probs=29.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC--cEEEEecCCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR--RVHVIERDLS   94 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~~   94 (506)
                      -.|.|||+|-.|.++|+.|...|+  ++.|+|..+.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   37 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence            379999999999999999999987  7999998753

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=92.25  E-value=0.086  Score=43.40  Aligned_cols=33  Identities=21%  Similarity=0.264  Sum_probs=28.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      -.|+|+|+|+.|+.++..+...|. +|++.|.++
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~   63 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDING   63 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCceeeeeccch
Confidence            379999999999999999999998 566777764

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.13  E-value=0.076  Score=44.66  Aligned_cols=33  Identities=33%  Similarity=0.284  Sum_probs=28.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      -.|+|+|+|+.|+.++..++..|. +|+++|.++
T Consensus        27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            489999999999999999988887 788888663

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.12  E-value=0.061  Score=43.70  Aligned_cols=32  Identities=28%  Similarity=0.498  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +|-|||-|..|...|..|.++|++|.++++.+
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~   33 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   33 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            58999999999999999999999999999874

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=91.90  E-value=0.067  Score=42.65  Aligned_cols=32  Identities=28%  Similarity=0.432  Sum_probs=28.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC--cEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGR--RVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~   93 (506)
                      .|.|||+|-.|.++|+.|..+|.  +++++|.+.
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             eEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            68999999999999999999885  799998763

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=91.88  E-value=0.089  Score=43.38  Aligned_cols=33  Identities=48%  Similarity=0.633  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ++|-|||-|..|...|..|.+.|++|.+++|++
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~   34 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCH
Confidence            579999999999999999999999999999874

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=91.86  E-value=0.093  Score=42.86  Aligned_cols=33  Identities=27%  Similarity=0.498  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      -+|+|+|+|-++-+.++.|.+.|. ++.|+.|+.
T Consensus        18 ~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          18 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            589999999999999999999997 799998863

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.69  E-value=0.075  Score=42.11  Aligned_cols=33  Identities=21%  Similarity=0.202  Sum_probs=29.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC--cEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR--RVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~   93 (506)
                      .+|.|||+|-.|.++|+.|+.+|.  +++|+|.++
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            368999999999999999998886  699999763

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=91.45  E-value=0.068  Score=46.82  Aligned_cols=34  Identities=32%  Similarity=0.530  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      +..|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            3699999999999999999999999 899998774

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.39  E-value=0.085  Score=41.67  Aligned_cols=33  Identities=27%  Similarity=0.373  Sum_probs=28.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC--cEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR--RVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~   93 (506)
                      .+|.|||+|-.|.++|+.|+.+|+  ++.++|.++
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            368999999999999999998885  799999763

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.33  E-value=0.083  Score=41.94  Aligned_cols=31  Identities=29%  Similarity=0.385  Sum_probs=27.9

Q ss_pred             cEEEECC-CHHHHHHHHHHHHCCC--cEEEEecC
Q 010623           62 DVIVVGA-GVAGAALANTLAKDGR--RVHVIERD   92 (506)
Q Consensus        62 dVvIVGg-G~aGl~~A~~La~~G~--~v~vvE~~   92 (506)
                      +|.|||| |-.|.++|+.|+..|+  .++++|.+
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEecc
Confidence            6899996 9999999999999987  68899875

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.91  E-value=0.098  Score=42.44  Aligned_cols=32  Identities=28%  Similarity=0.448  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .|-|||-|..|...|..|.++|++|.+++|++
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~   34 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ   34 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             EEEEEEEHHHHHHHHHHHHHCCCeEEEEECch
Confidence            59999999999999999999999999999874

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=90.81  E-value=0.11  Score=41.58  Aligned_cols=32  Identities=25%  Similarity=0.233  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +|.|||.|-.|...|..|.++|++|+++++.+
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~   33 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGR   33 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCch
Confidence            68999999999999999999999999998764

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.25  E-value=0.13  Score=41.84  Aligned_cols=32  Identities=25%  Similarity=0.545  Sum_probs=28.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC--cEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGR--RVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~   93 (506)
                      .|.|||.|..|.+.|..|.+.|+  +|..+|+++
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            49999999999999999999996  677788763

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=90.16  E-value=0.15  Score=41.82  Aligned_cols=33  Identities=18%  Similarity=0.192  Sum_probs=28.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      -.|+|+|+|+.|+.++..++..|. +|+++|.++
T Consensus        29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~   62 (174)
T d1p0fa2          29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK   62 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence            369999999999999999999997 688887763

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.73  E-value=0.16  Score=41.61  Aligned_cols=32  Identities=16%  Similarity=0.247  Sum_probs=26.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEE-EecC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHV-IERD   92 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~v-vE~~   92 (506)
                      -.|+|+|+|+.|++++..+...|.++++ .+++
T Consensus        30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~   62 (174)
T d1f8fa2          30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIV   62 (174)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESC
T ss_pred             CEEEEeCCCHHHhhhhhcccccccceeeeeccH
Confidence            4799999999999999999999986654 5544

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.69  E-value=0.0082  Score=52.54  Aligned_cols=35  Identities=11%  Similarity=0.249  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      ..+|+|||||..|+-+|..|++.|.+|+|+++.+.
T Consensus       180 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~  214 (233)
T d1djqa3         180 EAPRLIADATFTGHRVAREIEEANPQIAIPYKRET  214 (233)
T ss_dssp             TSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCC
T ss_pred             CCceeEecCchHHHHHHHHHHhcCCceEEEEeccc
Confidence            35799999999999999999999999999999864

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=89.43  E-value=0.26  Score=37.71  Aligned_cols=35  Identities=26%  Similarity=0.532  Sum_probs=31.5

Q ss_pred             CcEEEECCCH-----------HHHHHHHHHHHCCCcEEEEecCCCC
Q 010623           61 ADVIVVGAGV-----------AGAALANTLAKDGRRVHVIERDLSE   95 (506)
Q Consensus        61 ~dVvIVGgG~-----------aGl~~A~~La~~G~~v~vvE~~~~~   95 (506)
                      -.|+|+|+||           ++..++.+|++.|++++++.-+|..
T Consensus         8 kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~T   53 (127)
T d1a9xa3           8 KSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPAT   53 (127)
T ss_dssp             CEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTC
T ss_pred             CEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHh
Confidence            5799999998           7889999999999999999988754

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=89.21  E-value=0.24  Score=40.87  Aligned_cols=33  Identities=24%  Similarity=0.407  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      -+|+|+|+|-+|-++++.|.++|. +++|+.|.+
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~   52 (182)
T d1vi2a1          19 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD   52 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CEEEEECCcHHHHHHHHHHhhcCCceEeeeccch
Confidence            589999999999999999999998 788988874

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=89.20  E-value=0.28  Score=37.06  Aligned_cols=35  Identities=17%  Similarity=0.327  Sum_probs=31.3

Q ss_pred             CcEEEECCCH-----------HHHHHHHHHHHCCCcEEEEecCCCC
Q 010623           61 ADVIVVGAGV-----------AGAALANTLAKDGRRVHVIERDLSE   95 (506)
Q Consensus        61 ~dVvIVGgG~-----------aGl~~A~~La~~G~~v~vvE~~~~~   95 (506)
                      -.|+|+|+||           ++..++.+|++.|++++++.-+|..
T Consensus         5 kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeT   50 (121)
T d1a9xa4           5 EKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPET   50 (121)
T ss_dssp             CEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTS
T ss_pred             CEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhh
Confidence            4799999996           7889999999999999999998754

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=88.35  E-value=0.3  Score=39.80  Aligned_cols=32  Identities=22%  Similarity=0.324  Sum_probs=27.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      .|+|+|+|+.|+.++..++..|. +|+++++.+
T Consensus        31 ~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~   63 (175)
T d1cdoa2          31 TCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNP   63 (175)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEEEecCCccchHHHHHHHHhhchheeecchH
Confidence            59999999999999999999887 677787764

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.32  E-value=0.21  Score=40.13  Aligned_cols=33  Identities=33%  Similarity=0.368  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      -.|+|+|-|-.|-..|..|+..|.+|+++|.+|
T Consensus        25 k~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          25 KVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            479999999999999999999999999999985

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=87.95  E-value=0.26  Score=35.87  Aligned_cols=37  Identities=19%  Similarity=0.183  Sum_probs=31.9

Q ss_pred             CCCCCcEEEECCCHHHHHH-HHHHHHCCCcEEEEecCC
Q 010623           57 CPFDADVIVVGAGVAGAAL-ANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        57 ~~~~~dVvIVGgG~aGl~~-A~~La~~G~~v~vvE~~~   93 (506)
                      ++..-+|-+||-|-+|+++ |..|.++|++|.--|+..
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~   42 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD   42 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            3445689999999999888 999999999999999763

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=87.55  E-value=0.29  Score=38.49  Aligned_cols=31  Identities=35%  Similarity=0.426  Sum_probs=27.5

Q ss_pred             cEEEEC-CCHHHHHHHHHHHHCCC--cEEEEecC
Q 010623           62 DVIVVG-AGVAGAALANTLAKDGR--RVHVIERD   92 (506)
Q Consensus        62 dVvIVG-gG~aGl~~A~~La~~G~--~v~vvE~~   92 (506)
                      +|.||| +|-.|.++|+.|..+|+  .+.++|..
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~   35 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP   35 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCG
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecC
Confidence            689999 69999999999999987  68898853

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=87.48  E-value=0.31  Score=43.36  Aligned_cols=35  Identities=26%  Similarity=0.368  Sum_probs=31.2

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           60 DADVIVVGA-GVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGg-G~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      +.+|+|.|| |-.|..++..|.++|++|+++.|.+.
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            356999997 99999999999999999999988753

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=87.47  E-value=0.33  Score=39.41  Aligned_cols=33  Identities=24%  Similarity=0.204  Sum_probs=27.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      -.|+|+|+|+.|+.++..++..|. .|++.++++
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            479999999999999999988886 666677763

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=87.25  E-value=0.21  Score=40.02  Aligned_cols=33  Identities=30%  Similarity=0.394  Sum_probs=31.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      -.|+|+|=|-.|-.+|..|+..|.+|+|.|.+|
T Consensus        24 k~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP   56 (163)
T d1v8ba1          24 KIVVICGYGDVGKGCASSMKGLGARVYITEIDP   56 (163)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence            589999999999999999999999999999986

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=87.18  E-value=0.38  Score=39.20  Aligned_cols=32  Identities=19%  Similarity=0.261  Sum_probs=28.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      .|+|+|+|..|++++..++..|. +|++++.++
T Consensus        31 tVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~   63 (176)
T d2jhfa2          31 TCAVFGLGGVGLSVIMGCKAAGAARIIGVDINK   63 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCceEEeecCcH
Confidence            59999999999999999999985 888888764

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=87.11  E-value=0.32  Score=40.38  Aligned_cols=33  Identities=30%  Similarity=0.439  Sum_probs=30.2

Q ss_pred             CcEEEEC-CCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVG-AGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVG-gG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      -.|+|.| +|-.|..+|..|+++|.+|+++.|+.
T Consensus        24 K~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          24 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            4789998 59999999999999999999999984

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=86.80  E-value=0.35  Score=42.66  Aligned_cols=35  Identities=20%  Similarity=0.427  Sum_probs=32.0

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           60 DADVIVVGA-GVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGg-G~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      +.+|+|.|| |-.|-.++..|.+.|++|+++.|++.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~   38 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   38 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            468999998 99999999999999999999999754

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=86.65  E-value=0.28  Score=40.00  Aligned_cols=33  Identities=21%  Similarity=0.377  Sum_probs=30.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ..|+|+|+|-++-+++..|.+.+.+++|+.|..
T Consensus        19 k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          19 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            579999999999999999999888999998873

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=85.97  E-value=0.37  Score=38.70  Aligned_cols=32  Identities=41%  Similarity=0.593  Sum_probs=29.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERD   92 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~   92 (506)
                      ..|+|||+|-.|-..|..|..+|. +++|+-|.
T Consensus        25 ~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          25 KTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            589999999999999999999998 58888776

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=85.85  E-value=0.2  Score=40.09  Aligned_cols=27  Identities=30%  Similarity=0.284  Sum_probs=23.2

Q ss_pred             CCCCcEEEECC-CHHHHHHHHHHHHCCC
Q 010623           58 PFDADVIVVGA-GVAGAALANTLAKDGR   84 (506)
Q Consensus        58 ~~~~dVvIVGg-G~aGl~~A~~La~~G~   84 (506)
                      +.+.+|.|||| |..|.++|+.|+..++
T Consensus         2 ~~p~KV~IiGA~G~VG~~~a~~l~~~~l   29 (154)
T d1y7ta1           2 KAPVRVAVTGAAGQIGYSLLFRIAAGEM   29 (154)
T ss_dssp             CCCEEEEESSTTSHHHHHHHHHHHTTTT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhccc
Confidence            34579999997 9999999999998764

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=85.68  E-value=0.37  Score=37.97  Aligned_cols=32  Identities=31%  Similarity=0.339  Sum_probs=26.0

Q ss_pred             CcEEEEC-CCHHHHHHHHHHH-HCC--CcEEEEecC
Q 010623           61 ADVIVVG-AGVAGAALANTLA-KDG--RRVHVIERD   92 (506)
Q Consensus        61 ~dVvIVG-gG~aGl~~A~~La-~~G--~~v~vvE~~   92 (506)
                      .+|.||| +|-.|.++|+.|+ +.+  -++.++|..
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~   36 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA   36 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc
Confidence            3689999 5999999999886 434  589999865

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=85.61  E-value=0.34  Score=38.57  Aligned_cols=32  Identities=16%  Similarity=0.322  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      +|.|||+|-.|.+.|..|.+.|.++++.+|++
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            58999999999999999999999999999874

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=85.51  E-value=0.46  Score=38.39  Aligned_cols=33  Identities=18%  Similarity=0.206  Sum_probs=28.1

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           61 ADVIVVGA-GVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGg-G~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      -.|+|+|+ |+.|+.++..++..|. +|+++++++
T Consensus        29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~   63 (170)
T d1jvba2          29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE   63 (170)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             CEEEEEeccccceeeeeecccccccccccccccch
Confidence            36999995 9999999999988885 888888773

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=85.41  E-value=0.33  Score=39.71  Aligned_cols=32  Identities=34%  Similarity=0.559  Sum_probs=28.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      -+|+|+|+|-++-++++.|++.| ++.|+-|..
T Consensus        19 k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~   50 (177)
T d1nvta1          19 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTV   50 (177)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CEEEEECCcHHHHHHHHHHcccc-ceeeehhhh
Confidence            48999999999999999998888 899998873

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=85.09  E-value=0.39  Score=38.11  Aligned_cols=33  Identities=33%  Similarity=0.517  Sum_probs=28.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC-CcEEEEecCC
Q 010623           61 ADVIVVGAGVAGAALANTLAKDG-RRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGgG~aGl~~A~~La~~G-~~v~vvE~~~   93 (506)
                      ++|.|||+|-.|.+.|..|.+.| .++.+++|++
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            36899999999999999887777 8999999874

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=84.77  E-value=0.5  Score=38.51  Aligned_cols=28  Identities=25%  Similarity=0.235  Sum_probs=22.8

Q ss_pred             CCCCCCcEEEECC-CHHHHHHHHHHHHCC
Q 010623           56 ECPFDADVIVVGA-GVAGAALANTLAKDG   83 (506)
Q Consensus        56 ~~~~~~dVvIVGg-G~aGl~~A~~La~~G   83 (506)
                      +++...+|.|+|| |..|-++|+.|++..
T Consensus        20 ~~k~~~kV~I~GA~G~Ig~~l~~~La~g~   48 (175)
T d7mdha1          20 SWKKLVNIAVSGAAGMISNHLLFKLASGE   48 (175)
T ss_dssp             -CCCCEEEEEETTTSHHHHHHHHHHHHTT
T ss_pred             ccCCCcEEEEECCCcHHHHHHHHHHHcCc
Confidence            3445679999996 999999999999753

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.45  E-value=0.5  Score=39.46  Aligned_cols=34  Identities=29%  Similarity=0.449  Sum_probs=30.6

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           61 ADVIVVGA-GVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        61 ~dVvIVGg-G~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      -+|+|.|| |..|..++..|.++|++|+++.|++.
T Consensus         4 kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~   38 (205)
T d1hdoa_           4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (205)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChh
Confidence            36999996 99999999999999999999998754

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=83.70  E-value=0.36  Score=39.21  Aligned_cols=32  Identities=28%  Similarity=0.294  Sum_probs=28.2

Q ss_pred             cEEEECC-CHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           62 DVIVVGA-GVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        62 dVvIVGg-G~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .|+|.|| |+.|+.+...+...|.+|+.+++++
T Consensus        30 ~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~   62 (171)
T d1iz0a2          30 KVLVQAAAGALGTAAVQVARAMGLRVLAAASRP   62 (171)
T ss_dssp             EEEESSTTBHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             EEEEEeccccchhhhhhhhcccccccccccccc
Confidence            5888896 9999999999999999999998763

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.85  E-value=0.71  Score=37.38  Aligned_cols=31  Identities=26%  Similarity=0.282  Sum_probs=28.1

Q ss_pred             cEEEECC-CHHHHHHHHHHHHCCCcEEEEecC
Q 010623           62 DVIVVGA-GVAGAALANTLAKDGRRVHVIERD   92 (506)
Q Consensus        62 dVvIVGg-G~aGl~~A~~La~~G~~v~vvE~~   92 (506)
                      .|+|.|| |+.|+++...+...|.+|+++..+
T Consensus        31 ~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~   62 (174)
T d1yb5a2          31 SVLVHGASGGVGLAACQIARAYGLKILGTAGT   62 (174)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEEEeccccccccccccccccCccccccccc
Confidence            6999996 999999999999999999988865

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=82.64  E-value=0.51  Score=38.28  Aligned_cols=31  Identities=19%  Similarity=0.208  Sum_probs=26.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCc-EEEEecC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRR-VHVIERD   92 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~-v~vvE~~   92 (506)
                      .|+|.|+|+.|+.++..++..|.+ |++.+.+
T Consensus        31 tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~   62 (176)
T d2fzwa2          31 VCAVFGLGGVGLAVIMGCKVAGASRIIGVDIN   62 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSC
T ss_pred             EEEEecchhHHHHHHHHHHHHhcCceEEEccc
Confidence            699999999999999999999975 5555554

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.92  E-value=0.49  Score=44.60  Aligned_cols=34  Identities=41%  Similarity=0.653  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~   93 (506)
                      +.+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            4689999999999999999999999 899999874

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=81.79  E-value=1.1  Score=37.65  Aligned_cols=33  Identities=30%  Similarity=0.488  Sum_probs=29.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERD   92 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~   92 (506)
                      +.+|+|.|+|-+|+..|..+.+.|. ++.++|+.
T Consensus        26 d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~   59 (222)
T d1vl6a1          26 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK   59 (222)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             hcEEEEEChHHHHHHHHHHHHHhcccceEeecce
Confidence            4789999999999999999988886 68888886

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=81.53  E-value=0.47  Score=36.35  Aligned_cols=31  Identities=23%  Similarity=0.332  Sum_probs=26.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      .|+|+|.|..|..++..|.  |.++.++|.++.
T Consensus         2 HivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~   32 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR--GSEVFVLAEDEN   32 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC--GGGEEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHc--CCCCEEEEcchH
Confidence            5899999999999999995  557888998754

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=81.03  E-value=3.4  Score=33.46  Aligned_cols=35  Identities=29%  Similarity=0.389  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS   94 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~   94 (506)
                      ...|.|||.|..|-..|..|...|.+|..+++.+.
T Consensus        42 gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~   76 (181)
T d1qp8a1          42 GEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK   76 (181)
T ss_dssp             TCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CceEEEeccccccccceeeeecccccccccccccc
Confidence            35799999999999999999999999999998754

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=80.92  E-value=0.47  Score=41.54  Aligned_cols=33  Identities=18%  Similarity=0.298  Sum_probs=30.6

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           61 ADVIVVGA-GVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        61 ~dVvIVGg-G~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      ++|+|.|| |-.|-.++..|.++|++|+.+++..
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            56999998 9999999999999999999999874

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=80.78  E-value=0.62  Score=39.43  Aligned_cols=34  Identities=26%  Similarity=0.455  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623           60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL   93 (506)
Q Consensus        60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~   93 (506)
                      .-+|+|||+|-+|.-+|..|++.+.+++++=+.+
T Consensus        32 gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          32 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            3589999999999999999999999988887765