Citrus Sinensis ID: 010629

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-----
Protein Sequence
MEMQPHTIMDPFEEIGLAEKNAEQHRRSASEKEASENSGTVDLRHFAFYAFAGRSGLLRWSRKNENIEAQPTDASQLIPQHNYKLDVHALNSRHPGEFECREFRESVLGVMPHHWDRREDTLLKLSHFRRHKRKILKKVVGKSTSYPFHKPEEHHPPGKDSTKKISNLIGKAATYAGSAKSKKPVNYIPTITNYTQLWWVPNVVVAHQKEGIEAVHLASGRTVCKLHLQEGGLHADINGDGVLDHVQAVGGNGAEQTVVSGSMEVLRPCWAVATSGVPVREQLFNASICHHSPFNLFPHGEFSRNFGRTSDVASLEVATPILIPRSDGHRHRKGSHGDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFVQTRQPGALFFSTLVGCLIVVMGVIFVTQHLNSVKAKPRASSGLR
Secondary Structure (PSIPRED)
cccccccccccHHHHHcccHHHHHHccccHHHHccccccccccEEEEEEEEccccccEEcEEccccccccccccccccccccccccHHHcccccccccccHHHHHHHHcccccccccccccEEEEEEEEEcccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccEEEEEccccEEEEEcccccEEEEEEcccccEEEEccccccEEEEEEEccccccEEEEccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccEEEccEEEEccccccccccccccEEEEEcccEEEEEcccccccccEEEEEEcccccccccccccccccccEEEccEEEEEccccccccEEEEEEccEEEEEcccccEEEEEEcccccccccEEEEccccccccEEEEcccEEEEEEEEEccccHHHHHHHHHHHHHHHHHEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHcHHHHHHHHHcccHHHHHccccccccccccEEEEEEEcccccEEEEEcccccccccccHHHcccccccHHcHHHHcccccccccHHHHHHHHHHHccccccccccccEEHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccEEEEEccccEEEEEEccccEEEEEEccccccEEEcccccEEEEEEEEEccccccEccccccccccccEEEEEcccccHHHHccccccccccccccccccccccccccccccccEEccccEEEcccccccccccccEEEEEEcccEEEEEccccccccEEEEEEEEcccccccccccccccccccccccEEEEEccccccccEEEEEcccEEEEEcccccEEEEEEccccccccEEEEEcccccccEEEEEEcccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
memqphtimdpfeeiGLAEKNAEQHRRsasekeasensgtvdlrHFAFYAFAGrsgllrwsrknenieaqptdasqlipqhnykldvhalnsrhpgefecREFRESvlgvmphhwdrrEDTLLKLSHFRRHKRKILKKVVgkstsypfhkpeehhppgkdstkKISNLIGKAATyagsakskkpvnyiptitnytqlwwvpNVVVAHQKEGIEAVHLASGRTVCKLHLqegglhadingdgVLDHVqavggngaeqtvvsgsmevlrpcwavatsgvpvreqlfnasichhspfnlfphgefsrnfgrtsdvaslevatpiliprsdghrhrkgshgdvvfltnrgevtayspglhghdAIWQWQLLtdatwsnlpspsgmteastvvptlkafslRVHDNQQMilaggdqeavvispggsiltsidlpappthalvcedfsndgltdVILMTSNGvygfvqtrqpgaLFFSTLVGCLIVVMGVIFVTQHlnsvkakprassglr
Flexible Loop (DISEMBL)
memqphtimdpfeEIGLAEKNAEQHRRSasekeasensgtvdLRHFAFYAFAGRSGLLRWSRKNENIEAqptdasqlipqHNYKLDVHALNSRHPGEFECREFRESVLgvmphhwdrREDTLlklshfrrhkrkilkkvvgkstsypfhkpeehhppgkdsTKKISNLIGKAAtyagsakskkpvnYIPTITNYTQLWWVPNVVVAHQKEGIEAVHLASGRTVCKLHLQEGGLHADINGDGVLDHVQAVGGNGAEQTVVSGSMEVLRPCWAVATSGVPVREQLFNASICHHSPFNLFPHGEFSRNFGRTSDVASLEVATPIliprsdghrhrkgshgdvVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFVQTRQPGALFFSTLVGCLIVVMGVIFVTqhlnsvkakprassglr
Low Complexity Region (SEG)
MEMQPHTIMDPFEEIGLAEKNAEQHRRSASEKEASENSGTVDLRHFAFYAFAGRSGLLRWSRKNENIEAQPTDASQLIPQHNYKLDVHALNSRHPGEFECREFRESVLGVMPHHWDRREDTLLKLSHFRRHKRKILKKVVGKSTSYPFHKPEEHHPPGKDSTKKISNLIGKAATYAGSAKSKKPVNYIPTITNYTQLWWVPNVVVAHQKEGIEAVHLASGRTVCKLHLQEGGLHADINGDGVLDHVQAVGGNGAEQTVVSGSMEVLRPCWAVATSGVPVREQLFNASICHHSPFNLFPHGEFSRNFGRTSDVASLEVATPILIPRSDGHRHRKGSHGDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFVQTRQPGALFFSTLVGCLIVVMGVIFVTQHLNSVKAKPRASSGLR
Disordered region (IsUnstruct)
****************************************VDLRHFAFYAFAGRSGLLRWSR**************LIPQHNYKLDVHALNSRHPGEFECREFRESVLGVMPHHWDRREDTLLKLSHFRRHKRKILKKVV********************************ATY*******KPVNYIPTITNYTQLWWVPNVVVAHQKEGIEAVHLASGRTVCKLHLQEGGLHADINGDGVLDHVQAVGGNGAEQTVVSGSMEVLRPCWAVATSGVPVREQLFNASICHHSPFNLFPHGEFSRNFGRTSDVASLEVATPILIP***********HGDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNL*********STVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFVQTRQPGALFFSTLVGCLIVVMGVIFVTQHLN*************
Disordered Region (DISOPRED)
**********PFEE****************************LRHFAFYAFAGRSGLLRWSRKNE************I***NYKLDVHALNSRHPGEFECREFRESVLGVMPHHWDRREDTLLKLSH******************************************************************YTQLWWVPNVVVAHQKEGIEAVHLASGRTVCKLHLQEGGLHADINGDGVLDHVQAVGGN***********EVLRPCWAVATSGVPVREQLFNASICHHSPFNLFPHGEFSR**********LEVATPILI**********GSHGDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSN**********STVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFVQTRQPGALFFSTLVGCLIVVMGVIF*******************
Disordered Region (DISEMBL)
MEMQPHTIMDPFEEIGLAEK******************GTVDLRHFAFYAFAGRSGLLRWSRKNENIEAQPTDASQLIPQHNYKLDVHALNSRHPGEFECREFRESVLGVMPHHWDRREDTLLKLSHFRRHKRKILKKVVGKSTSYPFHK***********TKKISNLIGKAATYAGSAKSKKPVNYIPTITNYTQLWWVPNVVVAHQKEGIEAVHLASGRTVCKLHLQEGGLHADINGDGVLDHVQAVGGNGAEQTVVSGSMEVLRPCWAVATSGVPVREQLFNASICHHSPFNLFPHGEFSRNFGRTSDVASLEVATPILIPRSDGHRHRKGSHGDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLP*********TVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFVQTRQPGALFFSTLVGCLIVVMGVIFVTQHL**************
Disordered Region (DISPRO)
*****HTIMDPFEEIGLAEKNAE******************DLRHFAFYAFAGRSGLLRWSRKNENIEAQPTDASQLIPQHNYKLDVHALNSRHPGEFECREFRESVLGVMPHHWDRREDTLLKLSHFRRHKRK*****************************K*****G******G***SKKPVNYIPTITNYTQLWWVPNVVVAHQKEGIEAVHLASGRTVCKLHLQEGGLHADINGDGVLDHVQAVGGNGAEQTVVSGSMEVLRPCWAVATSGVPVREQLFNASICHHSPFNLFPHGEFSRNFGRTSDVASLEVATPILIPRSDGHRHRKGSHGDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFVQTRQPGALFFSTLVGCLIVVMGVIFVTQHLN*************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEMQPHTIMDPFEEIGLAEKNAEQHRRSASEKEASENSGTVDLRHFAFYAFAGRSGLLRWSRKNENIEAQPTDASQLIPQHNYKLDVHALNSRHPGEFECREFRESVLGVMPHHWDRREDTLLKLSHFRRHKRKILKKVVGKSTSYPFHKPEEHHPPGKDSTKKISNLIGKAATYAGSAKSKKPVNYIPTITNYTQLWWVPNVVVAHQKEGIEAVHLASGRTVCKLHLQEGGLHADINGDGVLDHVQAVGGNGAEQTVVSGSMEVLRPCWAVATSGVPVREQLFNASICHHSPFNLFPHGEFSRNFGRTSDVASLEVATPILIPRSDGHRHRKGSHGDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFVQTRQPGALFFSTLVGCLIVVMGVIFVTQHLNSVKAKPRASSGLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	505
255585207	1050	aldehyde dehydrogenase, putative [Ricinu	0.992	0.477	0.896	0.0
359476651	696	PREDICTED: uncharacterized protein LOC10	0.998	0.724	0.863	0.0
224134190	693	predicted protein [Populus trichocarpa]	0.990	0.721	0.861	0.0
356496701	697	PREDICTED: uncharacterized protein LOC10	1.0	0.724	0.824	0.0
449464520	686	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.992	0.730	0.830	0.0
449524524	664	PREDICTED: uncharacterized protein LOC10	0.992	0.754	0.829	0.0
356538246	693	PREDICTED: uncharacterized protein LOC10	0.994	0.724	0.817	0.0
224094889	679	predicted protein [Populus trichocarpa]	0.962	0.715	0.830	0.0
297816364	698	FG-GAP repeat-containing protein [Arabid	0.998	0.722	0.776	0.0
18087608	698	AT3g51050/F24M12_90 [Arabidopsis thalian	0.998	0.722	0.774	0.0

>gi|255585207|ref|XP_002533306.1| aldehyde dehydrogenase, putative [Ricinus communis] gi|223526871|gb|EEF29083.1| aldehyde dehydrogenase, putative [Ricinus communis]

 Score =  961 bits (2485), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/503 (89%), Positives = 477/503 (94%), Gaps = 2/503 (0%)

Query: 1    MEMQPHTIM--DPFEEIGLAEKNAEQHRRSASEKEASENSGTVDLRHFAFYAFAGRSGLL 58
            MEMQPH  +  DPFEEIG AEKNAE HRRSASEKEA+ENSGTVDLRHFAFYAFAGR+G L
Sbjct: 545  MEMQPHVYLELDPFEEIGTAEKNAEFHRRSASEKEATENSGTVDLRHFAFYAFAGRTGAL 604

Query: 59   RWSRKNENIEAQPTDASQLIPQHNYKLDVHALNSRHPGEFECREFRESVLGVMPHHWDRR 118
            RWSRKNENIEAQP+DASQLIPQHNYKLDVHALNSRHPGEFECREFRES+LGVMPHHWDRR
Sbjct: 605  RWSRKNENIEAQPSDASQLIPQHNYKLDVHALNSRHPGEFECREFRESILGVMPHHWDRR 664

Query: 119  EDTLLKLSHFRRHKRKILKKVVGKSTSYPFHKPEEHHPPGKDSTKKISNLIGKAATYAGS 178
            EDT LKLSHFRRHKRK LKKV GK+ +YPFHKPEE+HPPGKDSTKKIS +IGKAA YAGS
Sbjct: 665  EDTQLKLSHFRRHKRKTLKKVPGKTINYPFHKPEENHPPGKDSTKKISKIIGKAANYAGS 724

Query: 179  AKSKKPVNYIPTITNYTQLWWVPNVVVAHQKEGIEAVHLASGRTVCKLHLQEGGLHADIN 238
            AKSKKP  YIPTITNYTQLWWVPNVVVAHQKEGIEAVHLA+GRT+CKLHL EGGLHADIN
Sbjct: 725  AKSKKPFPYIPTITNYTQLWWVPNVVVAHQKEGIEAVHLATGRTLCKLHLLEGGLHADIN 784

Query: 239  GDGVLDHVQAVGGNGAEQTVVSGSMEVLRPCWAVATSGVPVREQLFNASICHHSPFNLFP 298
            GDGVLDHVQAVGGNGAEQTVVSGSMEVLRPCWAVATSGVPVREQLFNASICHHSPFNLF 
Sbjct: 785  GDGVLDHVQAVGGNGAEQTVVSGSMEVLRPCWAVATSGVPVREQLFNASICHHSPFNLFQ 844

Query: 299  HGEFSRNFGRTSDVASLEVATPILIPRSDGHRHRKGSHGDVVFLTNRGEVTAYSPGLHGH 358
            HGEFSRNFGRTSD +SLEVA+PILIPRSDGH+HRKGSHGDV+FLTNRGEVT+YSPGLHGH
Sbjct: 845  HGEFSRNFGRTSDASSLEVASPILIPRSDGHKHRKGSHGDVIFLTNRGEVTSYSPGLHGH 904

Query: 359  DAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISP 418
            DAIWQWQLLTDATWSNLPSPSGM E   VVPTLKAFSLR+HDNQQMILA GDQEAVVISP
Sbjct: 905  DAIWQWQLLTDATWSNLPSPSGMMEGGMVVPTLKAFSLRMHDNQQMILAAGDQEAVVISP 964

Query: 419  GGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFVQTRQPGALFFSTLVGCL 478
            GGSI T+IDLPAPPTHAL+CEDFS+DGLTD+I++TSNGVYGFVQTR PGALFFSTLVGCL
Sbjct: 965  GGSIQTTIDLPAPPTHALICEDFSSDGLTDLIVVTSNGVYGFVQTRTPGALFFSTLVGCL 1024

Query: 479  IVVMGVIFVTQHLNSVKAKPRAS 501
            ++VMGVIFVTQHLNS+K KPRAS
Sbjct: 1025 LIVMGVIFVTQHLNSIKGKPRAS 1047

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476651|ref|XP_002273723.2| PREDICTED: uncharacterized protein LOC100264247 [Vitis vinifera] gi|297735064|emb|CBI17426.3| unnamed protein product [Vitis vinifera]

 Score =  931 bits (2406), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/505 (86%), Positives = 472/505 (93%), Gaps = 1/505 (0%)

Query: 1   MEMQPHTIMDPFEEIGLAEKNAEQHRRSASEKEASENSGTVDLRHFAFYAFAGRSGLLRW 60
           MEM PH  MDPFE IG+ EKNAEQHRRSA+EKEASEN+GTVDLRHFAFYAFAGRSG +RW
Sbjct: 193 MEMLPHIYMDPFEVIGMTEKNAEQHRRSANEKEASENAGTVDLRHFAFYAFAGRSGAVRW 252

Query: 61  SRKNENIEAQPTDASQLIPQHNYKLDVHALNSRHPGEFECREFRESVLGVMPHHWDRRED 120
            RKNENI+   +DASQLIPQHNYKLD HALN+RHPGEFECREFRES+LGVMPHHWDRRED
Sbjct: 253 MRKNENIQTLSSDASQLIPQHNYKLDAHALNTRHPGEFECREFRESILGVMPHHWDRRED 312

Query: 121 TLLKLSHFRRHKRKILKKVVGKSTSYPFHKPEEHHPPGKDSTKKISNLIGKAATYAGSAK 180
           TLLKL+HFRRHKRK LKK  GKST+YPFHKPEE+HPPGKD TKKISNLIGKAA YA SAK
Sbjct: 313 TLLKLAHFRRHKRKTLKKTQGKSTNYPFHKPEENHPPGKDDTKKISNLIGKAAKYASSAK 372

Query: 181 SKKPVNYIPTITNYTQLWWVPNVVVAHQKEGIEAVHLASGRTVCKLHLQEGGLHADINGD 240
           SKKP+ Y+PTITNYTQLWWVPNVVVAHQ+EGIEAVHL +GRT+CKLHLQEGGLHADINGD
Sbjct: 373 SKKPLPYVPTITNYTQLWWVPNVVVAHQREGIEAVHLPTGRTICKLHLQEGGLHADINGD 432

Query: 241 GVLDHVQAVGGNGAEQTVVSGSMEVLRPCWAVATSGVPVREQLFNASICHHSPFNLFPHG 300
           GVLDHVQ VGGNGAEQTVVSGSMEVLRPCWAVATSGVPVREQLFNASICHHSPFNLF HG
Sbjct: 433 GVLDHVQVVGGNGAEQTVVSGSMEVLRPCWAVATSGVPVREQLFNASICHHSPFNLFQHG 492

Query: 301 EFSRNFGRTSDVASLEVATPILIPRSDGHRHRKGSHGDVVFLTNRGEVTAYSPGLHGHDA 360
           EFSR+F RT D+ SLEVATPILIPR+DGHRHRKGSHGD++FLTNRGEVT+YSPGLHGHDA
Sbjct: 493 EFSRSFSRTPDLGSLEVATPILIPRNDGHRHRKGSHGDIIFLTNRGEVTSYSPGLHGHDA 552

Query: 361 IWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGG 420
           IWQWQLLT ATWSNLPSPSGM E S VVPTLKAFSLR HDN+++ILA GDQEA+++SPGG
Sbjct: 553 IWQWQLLTGATWSNLPSPSGMME-SMVVPTLKAFSLRAHDNRELILAAGDQEAIMMSPGG 611

Query: 421 SILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFVQTRQPGALFFSTLVGCLIV 480
           S+LTS++LPA PTHAL+CEDFSNDGLTD+IL+TSNGVYGFVQTRQPGALFFSTLVGCLIV
Sbjct: 612 SLLTSVELPAAPTHALICEDFSNDGLTDLILVTSNGVYGFVQTRQPGALFFSTLVGCLIV 671

Query: 481 VMGVIFVTQHLNSVKAKPRASSGLR 505
           VMGVIFVTQ+LNS+K KPRASSG R
Sbjct: 672 VMGVIFVTQYLNSMKGKPRASSGPR 696

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134190|ref|XP_002327778.1| predicted protein [Populus trichocarpa] gi|222836863|gb|EEE75256.1| predicted protein [Populus trichocarpa]

 Score =  914 bits (2363), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/506 (86%), Positives = 465/506 (91%), Gaps = 6/506 (1%)

Query: 1   MEMQPHTIMDPFEEIGLAEKNAEQHRRSASEKEASENSGTVDLRHFAFYAFAGRSGLLRW 60
           MEMQPH   DPFEEIG+AEKNAEQHRRSASEKE SENSGTV+LRHFA YAFAGR+G LRW
Sbjct: 193 MEMQPHIYSDPFEEIGMAEKNAEQHRRSASEKEPSENSGTVNLRHFALYAFAGRTGALRW 252

Query: 61  SRKNENIEAQPTDASQLIPQHNYKLDVHALNSRHPGEFECREFRESVLGVMPHHWDRRED 120
           SRKNE+ +A    ASQLIPQHNYKLDVHALNSRHPGEFECREFRES+LGVMPHHWDRRED
Sbjct: 253 SRKNESSDA----ASQLIPQHNYKLDVHALNSRHPGEFECREFRESILGVMPHHWDRRED 308

Query: 121 TLLKLSHFRRHKRKILKKVVGKSTSYPFHKPEEHHPPGKDSTKKISNLIGKAATYAGSAK 180
           T+L+LSHFRRHKRK  KK  GK+T+YPFHKPEE+HPPGKDS KKISNLIG+AA YAGS K
Sbjct: 309 TVLQLSHFRRHKRKTSKKSNGKTTNYPFHKPEENHPPGKDSAKKISNLIGEAAKYAGSTK 368

Query: 181 SKKPVNYIPTITNYTQLWWVPNVVVAHQKEGIEAVHLASGRTVCKLHLQEGGLHADINGD 240
           SKKP  YIPTITNYTQLWW+PNVVVAHQKEGIEAVHLASGRT+CKLHLQEGGLHADINGD
Sbjct: 369 SKKPFQYIPTITNYTQLWWLPNVVVAHQKEGIEAVHLASGRTLCKLHLQEGGLHADINGD 428

Query: 241 GVLDHVQAVGGNGAEQTVVSGSMEVLRPCWAVATSGVPVREQLFNASIC-HHSPFNLFPH 299
           GVLDHVQAVGGNGAEQTV+SGSMEVL+PCWAVATSGVPVREQLFNASIC HHSP NLF H
Sbjct: 429 GVLDHVQAVGGNGAEQTVISGSMEVLQPCWAVATSGVPVREQLFNASICHHHSPLNLFQH 488

Query: 300 GEFSRNFGRTSDVASLEVATPILIPRSDGHRHRKGSHGDVVFLTNRGEVTAYSPGLHGHD 359
           G+F RNFGRT DV+SLEVATPILIPR DGHRHRKGSHGDVVFLTNRGEVT+YSPGLHGHD
Sbjct: 489 GDFGRNFGRT-DVSSLEVATPILIPRGDGHRHRKGSHGDVVFLTNRGEVTSYSPGLHGHD 547

Query: 360 AIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPG 419
           A+WQWQ+ T ATWSNLPSPSGM E   VVPTLKAFSLR  DNQQMILA GDQEA VISPG
Sbjct: 548 AVWQWQISTGATWSNLPSPSGMMEGGMVVPTLKAFSLRARDNQQMILAAGDQEASVISPG 607

Query: 420 GSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFVQTRQPGALFFSTLVGCLI 479
           GSI TS+DLPAPPTHAL+CEDFSNDGLTD+I++TSNGVYGFVQTR PGALFFSTLVGCL+
Sbjct: 608 GSIQTSVDLPAPPTHALICEDFSNDGLTDLIVVTSNGVYGFVQTRSPGALFFSTLVGCLL 667

Query: 480 VVMGVIFVTQHLNSVKAKPRASSGLR 505
           +VMGVIFVTQHLNS+K KPRASS  R
Sbjct: 668 IVMGVIFVTQHLNSIKEKPRASSAAR 693

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496701|ref|XP_003517204.1| PREDICTED: uncharacterized protein LOC100787497 [Glycine max]

 Score =  893 bits (2308), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/506 (82%), Positives = 459/506 (90%), Gaps = 1/506 (0%)

Query: 1   MEMQPHTIMDPFEEIGLAEKNAEQHRRSASEKEASENSGTVDLRHFAFYAFAGRSGLLRW 60
           MEMQPH  MDPFEE+G+  + AEQHRRSA+EKEASENSGTVDLRHFAFYAFAGRSG+ RW
Sbjct: 192 MEMQPHIFMDPFEEMGMGARFAEQHRRSAAEKEASENSGTVDLRHFAFYAFAGRSGVERW 251

Query: 61  SRKNENIEAQPTDASQLIPQHNYKLDVHALNSRHPGEFECREFRESVLGVMPHHWDRRED 120
           SRKNENIE   +DASQL+PQHNYKLDVHALN+R PGE+ECREFRES+LGVMPH W RRED
Sbjct: 252 SRKNENIEVHSSDASQLLPQHNYKLDVHALNTRQPGEYECREFRESILGVMPHQWARRED 311

Query: 121 TLLKLSHFRRHKRKILKKVVGKSTSYPFHKPEEHHPPGKDSTKKISNLIGKAATYAGSAK 180
           TLLKL+HFRRHKRK LKK  GK+ SYPFHKPEE+HPPGKDSTKKISN+IGKAA YAGSAK
Sbjct: 312 TLLKLAHFRRHKRKTLKKTPGKAMSYPFHKPEENHPPGKDSTKKISNIIGKAANYAGSAK 371

Query: 181 SKKPVNYIPTITNYTQLWWVPNVVVAHQKEGIEAVHLASGRTVCKLHLQEGGLHADINGD 240
           SKK + Y+PTITNYTQ+WWVPNVVVAHQKEGIEA+HLASGRT+CKLHLQEGGLHADINGD
Sbjct: 372 SKKHLPYVPTITNYTQVWWVPNVVVAHQKEGIEALHLASGRTICKLHLQEGGLHADINGD 431

Query: 241 GVLDHVQAVGGNGAEQTVVSGSMEVLRPCWAVATSGVPVREQLFNASICHHSPFNLFPHG 300
           GVLDHVQAVGGNGAEQTVVSGSMEVLRPCWA+ATSGVP+REQLFN SICH++ FNLF HG
Sbjct: 432 GVLDHVQAVGGNGAEQTVVSGSMEVLRPCWAIATSGVPIREQLFNVSICHYTHFNLFQHG 491

Query: 301 EFSRNFGRTSDVASLEVATPILIPRSDGHRHRKGSHGDVVFLTNRGEVTAYSPGLHGHDA 360
           E  R++ + SD+ASLEVATPILIPRSDGHRHRKGSHGDV+FLTNRGE+T+YSPGLHGHDA
Sbjct: 492 ELYRSYSQGSDIASLEVATPILIPRSDGHRHRKGSHGDVIFLTNRGEITSYSPGLHGHDA 551

Query: 361 IWQWQLLTDATWSNLPSPSGMTE-ASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPG 419
           IWQWQ  T  TWSNLPSPSG+ E    V+PTLK  SLR+HDNQ+MILA G+QEAV+ISPG
Sbjct: 552 IWQWQQSTGVTWSNLPSPSGVMEGGGLVIPTLKPLSLRLHDNQEMILAAGEQEAVIISPG 611

Query: 420 GSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFVQTRQPGALFFSTLVGCLI 479
           GS+L +I+LP PPTH L+ EDFSNDGLTD+IL+TSNGVYGFVQTRQPGALFFS LVGCLI
Sbjct: 612 GSLLATIELPGPPTHVLIAEDFSNDGLTDLILVTSNGVYGFVQTRQPGALFFSMLVGCLI 671

Query: 480 VVMGVIFVTQHLNSVKAKPRASSGLR 505
           VVMGVIFVTQHLNS K KPR SSG R
Sbjct: 672 VVMGVIFVTQHLNSTKGKPRPSSGSR 697

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464520|ref|XP_004149977.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101223217 [Cucumis sativus]

 Score =  887 bits (2291), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/502 (83%), Positives = 459/502 (91%), Gaps = 1/502 (0%)

Query: 1   MEMQPHTIMDPFEEIGLAEKNAEQHRRSASEKEASENSGTVDLRHFAFYAFAGRSGLLRW 60
           MEMQ H  MDPFEEIG+AEKNAEQHRRSA+EKEASENSG++DLRHFAFYAFAGRSGL RW
Sbjct: 184 MEMQSHIFMDPFEEIGIAEKNAEQHRRSATEKEASENSGSIDLRHFAFYAFAGRSGLPRW 243

Query: 61  SRKNENIEAQPTDASQLIPQHNYKLDVHALNSRHPGEFECREFRESVLGVMPHHWDRRED 120
           SRKNENIEA  +DASQLIPQHNYKLDVH+LN+RHPGEFECREFRES+LGVMPHHWDRRED
Sbjct: 244 SRKNENIEAHSSDASQLIPQHNYKLDVHSLNARHPGEFECREFRESILGVMPHHWDRRED 303

Query: 121 TLLKLSHFRRHKRKILKKVVGKSTSYPFHKPEEHHPPGKDSTKKISNLIGKAATYAGSAK 180
           T+L+L+HFRRHKRK LKK  GKS +YPFHKPEE+HPPGKDS+K+I  +IG AA  AGSAK
Sbjct: 304 TVLELAHFRRHKRKALKKTSGKSVNYPFHKPEENHPPGKDSSKRIPKIIGTAANIAGSAK 363

Query: 181 SKKPVNYIPTITNYTQLWWVPNVVVAHQKEGIEAVHLASGRTVCKLHLQEGGLHADINGD 240
           +KKP+ Y+PTITNYT+LWW+PNVVVAHQKEGIEA+HLASGRT+CKLHLQEGGLHADINGD
Sbjct: 364 TKKPLPYVPTITNYTKLWWLPNVVVAHQKEGIEALHLASGRTICKLHLQEGGLHADINGD 423

Query: 241 GVLDHVQAVGGNGAEQTVVSGSMEVLRPCWAVATSGVPVREQLFNASICHHSPFNLFPHG 300
           GVLDHVQAVGGNGAE+TVVSGSMEV++PCWAVATSGVPVREQLFNASICH SPFN F HG
Sbjct: 424 GVLDHVQAVGGNGAERTVVSGSMEVIQPCWAVATSGVPVREQLFNASICHFSPFNYFQHG 483

Query: 301 EFSRNFGRTSDVASLEVATPILIPRSDGHRHRKGSHGDVVFLTNRGEVTAYSPGLHGHDA 360
           E SR FGRT D+ASLEVATPILI R DGHRHRKGSHGDVVFLTNRGEVT+YSPGLHGH A
Sbjct: 484 ELSR-FGRTPDMASLEVATPILISRKDGHRHRKGSHGDVVFLTNRGEVTSYSPGLHGHGA 542

Query: 361 IWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGG 420
            WQWQ+ T ATWSNLPSPSGM +A TV+PTLKA  LRV   Q+M+LA G+QEAVVISPGG
Sbjct: 543 DWQWQITTGATWSNLPSPSGMMDAGTVIPTLKAIDLRVGATQEMVLAAGEQEAVVISPGG 602

Query: 421 SILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFVQTRQPGALFFSTLVGCLIV 480
           S+  SI+LPA PTHAL+ EDFSNDGLTD+IL+TS GVYGFVQTRQPGALFFSTLVGCLI+
Sbjct: 603 SVQASIELPASPTHALITEDFSNDGLTDIILVTSTGVYGFVQTRQPGALFFSTLVGCLIL 662

Query: 481 VMGVIFVTQHLNSVKAKPRASS 502
           VMGVIFVTQHLNS+K KPR S+
Sbjct: 663 VMGVIFVTQHLNSIKGKPRPSA 684

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449524524|ref|XP_004169272.1| PREDICTED: uncharacterized protein LOC101231345 [Cucumis sativus]

 Score =  883 bits (2281), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/503 (82%), Positives = 459/503 (91%), Gaps = 2/503 (0%)

Query: 1   MEMQPHTIMDPFEEIGLAEKNAEQHRRSASEKEASENSGTVDLRHFAFYAFAGRSGLLRW 60
           MEMQ H  MDPFEEIG+AEKNAEQHRRSA+EKEASENSG++DLRHFAFYAFAGRSGL RW
Sbjct: 161 MEMQSHIFMDPFEEIGIAEKNAEQHRRSATEKEASENSGSIDLRHFAFYAFAGRSGLPRW 220

Query: 61  SRKNE-NIEAQPTDASQLIPQHNYKLDVHALNSRHPGEFECREFRESVLGVMPHHWDRRE 119
           SRKNE NIEA  +DASQLIPQHNYKLDVH+LN+RHPGEFECREFRES+LGVMPHHWDRRE
Sbjct: 221 SRKNEVNIEAHSSDASQLIPQHNYKLDVHSLNARHPGEFECREFRESILGVMPHHWDRRE 280

Query: 120 DTLLKLSHFRRHKRKILKKVVGKSTSYPFHKPEEHHPPGKDSTKKISNLIGKAATYAGSA 179
           DT+L+L+HFRRHKRK LKK  GKS +YPFHKPEE+HPPGKDS+K+I  +IG AA  AGSA
Sbjct: 281 DTVLELAHFRRHKRKALKKTSGKSVNYPFHKPEENHPPGKDSSKRIPKIIGTAANIAGSA 340

Query: 180 KSKKPVNYIPTITNYTQLWWVPNVVVAHQKEGIEAVHLASGRTVCKLHLQEGGLHADING 239
           K+KKP+ Y+PTITNYT+LWW+PNVVVAHQKEGIEA+HLASGRT+CKLHLQEGGLHADING
Sbjct: 341 KTKKPLPYVPTITNYTKLWWLPNVVVAHQKEGIEALHLASGRTICKLHLQEGGLHADING 400

Query: 240 DGVLDHVQAVGGNGAEQTVVSGSMEVLRPCWAVATSGVPVREQLFNASICHHSPFNLFPH 299
           DGVLDHVQAVGGNGAE+TVVSGSMEV++PCWAVATSGVPVREQLFNASICH SPFN F H
Sbjct: 401 DGVLDHVQAVGGNGAERTVVSGSMEVIQPCWAVATSGVPVREQLFNASICHFSPFNYFQH 460

Query: 300 GEFSRNFGRTSDVASLEVATPILIPRSDGHRHRKGSHGDVVFLTNRGEVTAYSPGLHGHD 359
           GE SR FGRT D+ASLEVATPILI R DGHRHRKGSHGDVVFLTNRGEVT+YSPGLHGH 
Sbjct: 461 GELSR-FGRTPDMASLEVATPILISRKDGHRHRKGSHGDVVFLTNRGEVTSYSPGLHGHG 519

Query: 360 AIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPG 419
           A WQWQ+ T ATWSNLPSPSGM +A TV+PTLKA  LRV   Q+M+LA G+QEAVVISPG
Sbjct: 520 ADWQWQITTGATWSNLPSPSGMMDAGTVIPTLKAIDLRVGATQEMVLAAGEQEAVVISPG 579

Query: 420 GSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFVQTRQPGALFFSTLVGCLI 479
           GS+  SI+LPA PTHAL+ EDFSNDGLTD+IL+TS GVYGFVQTRQPGALFFSTLVGCLI
Sbjct: 580 GSVQASIELPASPTHALITEDFSNDGLTDIILVTSTGVYGFVQTRQPGALFFSTLVGCLI 639

Query: 480 VVMGVIFVTQHLNSVKAKPRASS 502
           +VMGVIFVTQHLNS+K KPR S+
Sbjct: 640 LVMGVIFVTQHLNSIKGKPRPSA 662

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538246|ref|XP_003537615.1| PREDICTED: uncharacterized protein LOC100789851 [Glycine max]

 Score =  880 bits (2273), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/505 (81%), Positives = 454/505 (89%), Gaps = 3/505 (0%)

Query: 1   MEMQPHTIMDPFEEIGLAEKNAEQHRRSASEKEASENSGTVDLRHFAFYAFAGRSGLLRW 60
           MEMQPH  MDPFEE+G+  + AEQH+RSA+EKEAS   GTVDLRHFAFYAFAGRSG  RW
Sbjct: 192 MEMQPHIFMDPFEEMGMGARFAEQHQRSAAEKEAS---GTVDLRHFAFYAFAGRSGDERW 248

Query: 61  SRKNENIEAQPTDASQLIPQHNYKLDVHALNSRHPGEFECREFRESVLGVMPHHWDRRED 120
           SRKNENIEA  +DASQL+PQHNYKLDVHALN+R PGEFECREFRES+LGVMPH W RRED
Sbjct: 249 SRKNENIEAHSSDASQLLPQHNYKLDVHALNTRQPGEFECREFRESILGVMPHQWARRED 308

Query: 121 TLLKLSHFRRHKRKILKKVVGKSTSYPFHKPEEHHPPGKDSTKKISNLIGKAATYAGSAK 180
           TL KL+HFRRHKRK LKK  GK+ SYPFHKPEE+HPPGKDSTKKISN+IGKAA+YAGSAK
Sbjct: 309 TLFKLAHFRRHKRKALKKTPGKAISYPFHKPEENHPPGKDSTKKISNIIGKAASYAGSAK 368

Query: 181 SKKPVNYIPTITNYTQLWWVPNVVVAHQKEGIEAVHLASGRTVCKLHLQEGGLHADINGD 240
           SKK + Y+PTITNYTQ+WWVPNVVV+HQKEGIEA+HLA+GRT+CK HLQEGGLHAD+NGD
Sbjct: 369 SKKHLPYVPTITNYTQVWWVPNVVVSHQKEGIEALHLATGRTICKFHLQEGGLHADVNGD 428

Query: 241 GVLDHVQAVGGNGAEQTVVSGSMEVLRPCWAVATSGVPVREQLFNASICHHSPFNLFPHG 300
           GVLDHVQAVGGNGAEQTVVSGSMEVLRPCWAVATSGVPVREQLFN SICH++ FNLF HG
Sbjct: 429 GVLDHVQAVGGNGAEQTVVSGSMEVLRPCWAVATSGVPVREQLFNVSICHYTHFNLFQHG 488

Query: 301 EFSRNFGRTSDVASLEVATPILIPRSDGHRHRKGSHGDVVFLTNRGEVTAYSPGLHGHDA 360
           E  R++ + SD ASLEVATPILIPRSDGHRHRKGSHGDV+FLTNRGE+T+YSPGLHGHDA
Sbjct: 489 ELYRSYSQGSDTASLEVATPILIPRSDGHRHRKGSHGDVIFLTNRGEITSYSPGLHGHDA 548

Query: 361 IWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGG 420
           IWQWQ  T  TWSNLPSPSGM E   V+PTLK  SLR+HDNQ+MILA G+QEAV+ISPGG
Sbjct: 549 IWQWQQSTGVTWSNLPSPSGMMEGGLVIPTLKPLSLRLHDNQEMILAAGEQEAVIISPGG 608

Query: 421 SILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFVQTRQPGALFFSTLVGCLIV 480
           SIL +I+LP PPTH L+ EDFSNDGLTD+IL+TS+GVYGFVQTRQPGALFFS LVGCLIV
Sbjct: 609 SILATIELPGPPTHVLITEDFSNDGLTDLILVTSHGVYGFVQTRQPGALFFSMLVGCLIV 668

Query: 481 VMGVIFVTQHLNSVKAKPRASSGLR 505
           VMGVIFVTQHLNS K KPR SSG R
Sbjct: 669 VMGVIFVTQHLNSTKGKPRPSSGPR 693

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094889|ref|XP_002310280.1| predicted protein [Populus trichocarpa] gi|222853183|gb|EEE90730.1| predicted protein [Populus trichocarpa]

 Score =  878 bits (2269), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/506 (83%), Positives = 455/506 (89%), Gaps = 20/506 (3%)

Query: 1   MEMQPHTIMDPFEEIGLAEKNAEQHRRSASEKEASENSGTVDLRHFAFYAFAGRSGLLRW 60
           ME+QPH  +DPFEEIG+AEKNAEQHRRSA EKE SENSGTV+LRHFA YAFAGR+G +RW
Sbjct: 193 MEVQPHNYLDPFEEIGMAEKNAEQHRRSAGEKEPSENSGTVNLRHFALYAFAGRTGTVRW 252

Query: 61  SRKNENIEAQPTDA-SQLIPQHNYKLDVHALNSRHPGEFECREFRESVLGVMPHHWDRRE 119
           SRKNENIEA+ +DA SQLIPQHNYKLDVHALNSRHPGE                  DRRE
Sbjct: 253 SRKNENIEAESSDAASQLIPQHNYKLDVHALNSRHPGE------------------DRRE 294

Query: 120 DTLLKLSHFRRHKRKILKKVVGKSTSYPFHKPEEHHPPGKDSTKKISNLIGKAATYAGSA 179
           DT+L+LSHFRRHKRK  KK  GK+++YPFHKPEE+HPPGKD+TKKISNLIGKAA YA S 
Sbjct: 295 DTVLQLSHFRRHKRKTSKKSNGKNSNYPFHKPEENHPPGKDTTKKISNLIGKAAKYASST 354

Query: 180 KSKKPVNYIPTITNYTQLWWVPNVVVAHQKEGIEAVHLASGRTVCKLHLQEGGLHADING 239
           KSKKP  YIPTITNYTQLWWVPNVVVAHQKEGIEA+HLASGRT+CKLHLQEGGLHADING
Sbjct: 355 KSKKPSQYIPTITNYTQLWWVPNVVVAHQKEGIEAIHLASGRTLCKLHLQEGGLHADING 414

Query: 240 DGVLDHVQAVGGNGAEQTVVSGSMEVLRPCWAVATSGVPVREQLFNASICHHSPFNLFPH 299
           DGVLDHVQAVGGNGAE+TVVSG+MEVL+PCWAVATSGVPVREQLFNASICHHSPFNLF H
Sbjct: 415 DGVLDHVQAVGGNGAEKTVVSGAMEVLQPCWAVATSGVPVREQLFNASICHHSPFNLFQH 474

Query: 300 GEFSRNFGRTSDVASLEVATPILIPRSDGHRHRKGSHGDVVFLTNRGEVTAYSPGLHGHD 359
           G+F RNFGRT DV+SLEVATPILIPRSDGHRHRKGSHGDVVFLTNRGEVT+YSPGLHGHD
Sbjct: 475 GDFGRNFGRT-DVSSLEVATPILIPRSDGHRHRKGSHGDVVFLTNRGEVTSYSPGLHGHD 533

Query: 360 AIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPG 419
           A+WQWQ+LT ATWSNLPSPSGM E   VVPTLKAFSLR HDNQQMILA GDQEA VISPG
Sbjct: 534 AVWQWQILTGATWSNLPSPSGMMEGGMVVPTLKAFSLRAHDNQQMILAAGDQEAAVISPG 593

Query: 420 GSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFVQTRQPGALFFSTLVGCLI 479
           GS+ TS DLPAPPTHAL+CEDF+NDGL D+I++TSNGVYGFVQTR PGALFFSTLVGCL+
Sbjct: 594 GSVQTSFDLPAPPTHALICEDFTNDGLPDLIVVTSNGVYGFVQTRSPGALFFSTLVGCLL 653

Query: 480 VVMGVIFVTQHLNSVKAKPRASSGLR 505
           +VMGVIFVTQH+NS+K KPRASSGLR
Sbjct: 654 IVMGVIFVTQHINSIKGKPRASSGLR 679

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816364|ref|XP_002876065.1| FG-GAP repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297321903|gb|EFH52324.1| FG-GAP repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  851 bits (2198), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/506 (77%), Positives = 452/506 (89%), Gaps = 2/506 (0%)

Query: 1   MEMQPHTIMDPFEEIGLAEKNAEQHRRSASEKEASENSGTVDLRHFAFYAFAGRSGLLRW 60
           MEMQP+  MDPFEE+G+  +NAEQHRRSA+E +ASE+SG ++LRHF+ YAFAG++GLLRW
Sbjct: 193 MEMQPYNHMDPFEELGMTAQNAEQHRRSATENQASEDSGAINLRHFSVYAFAGKTGLLRW 252

Query: 61  SRKNENIEAQPTDASQLIPQHNYKLDVHALNSRHPGEFECREFRESVLGVMPHHWDRRED 120
           S+K +++EA  +DASQLIPQHNYKLDVHALNSRHPGEFECREFRES+L VMPHHWDRRED
Sbjct: 253 SKKTDDVEAHTSDASQLIPQHNYKLDVHALNSRHPGEFECREFRESILSVMPHHWDRRED 312

Query: 121 TLLKLSHFRRHKRKILKKVVG-KSTSYPFHKPEEHHPPGKDSTKKISNLIGKAATYAGSA 179
           TLLKL+HFRRHKRK LKK  G KST+YPFHKPEEH P GKD ++KI  LIGKAA YAGSA
Sbjct: 313 TLLKLAHFRRHKRKTLKKQAGSKSTAYPFHKPEEHTPAGKDLSRKIPKLIGKAARYAGSA 372

Query: 180 KSKKPVNYIPTITNYTQLWWVPNVVVAHQKEGIEAVHLASGRTVCKLHLQEGGLHADING 239
           K KK + YIPTITNYT+LWWVPNVVVAHQKEGIEA+HL +GRT+CKL L EGGLHADING
Sbjct: 373 KPKKGMQYIPTITNYTKLWWVPNVVVAHQKEGIEAIHLPTGRTLCKLSLLEGGLHADING 432

Query: 240 DGVLDHVQAVGGNGAEQTVVSGSMEVLRPCWAVATSGVPVREQLFNASICHHSPFNLFPH 299
           DGVLDHVQ VGGN  E+TVVSGSMEVL+PCWAVATSGVP+REQLFN SICHHSPFN   +
Sbjct: 433 DGVLDHVQTVGGNVGERTVVSGSMEVLKPCWAVATSGVPIREQLFNVSICHHSPFNFLHY 492

Query: 300 G-EFSRNFGRTSDVASLEVATPILIPRSDGHRHRKGSHGDVVFLTNRGEVTAYSPGLHGH 358
           G ++SR+F +  D ++LE+ATPILIPR DGH+HR+GSHGDV+FLTNRGEVT+Y+P +HGH
Sbjct: 493 GGDYSRHFAQARDTSTLEIATPILIPRDDGHKHRRGSHGDVIFLTNRGEVTSYTPDVHGH 552

Query: 359 DAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISP 418
           DA+WQWQL T+ATWSNLPSPSG+TE+ TVVPTLK FSLR+HDNQ MILAGGDQ AV+ISP
Sbjct: 553 DAVWQWQLQTEATWSNLPSPSGLTESGTVVPTLKPFSLRIHDNQPMILAGGDQAAVIISP 612

Query: 419 GGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFVQTRQPGALFFSTLVGCL 478
           GGSIL SI+LP+ PTHAL+ +DFSNDGLTDVI+MTSNGVYGFVQTRQPGALFFS+LVGCL
Sbjct: 613 GGSILASIELPSQPTHALITDDFSNDGLTDVIVMTSNGVYGFVQTRQPGALFFSSLVGCL 672

Query: 479 IVVMGVIFVTQHLNSVKAKPRASSGL 504
           +VVM VIFVTQHLNS++ KPR SS  
Sbjct: 673 LVVMAVIFVTQHLNSIQGKPRPSSSF 698

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18087608|gb|AAL58934.1|AF462847_1 AT3g51050/F24M12_90 [Arabidopsis thaliana] gi|24797020|gb|AAN64522.1| At3g51050/F24M12_90 [Arabidopsis thaliana]

 Score =  848 bits (2192), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/506 (77%), Positives = 451/506 (89%), Gaps = 2/506 (0%)

Query: 1   MEMQPHTIMDPFEEIGLAEKNAEQHRRSASEKEASENSGTVDLRHFAFYAFAGRSGLLRW 60
           MEMQP+  MDPFEE+G+  +NA+QHRRSA+E +ASE+SG ++LRHF+ YAFAG++GLLRW
Sbjct: 193 MEMQPYNHMDPFEELGMTAQNADQHRRSATENQASEDSGAINLRHFSVYAFAGKTGLLRW 252

Query: 61  SRKNENIEAQPTDASQLIPQHNYKLDVHALNSRHPGEFECREFRESVLGVMPHHWDRRED 120
           S+K +++EA  +DASQLIPQHNYKLDVHALNSRHPGEFECREFRES+L VMPH WDRRED
Sbjct: 253 SKKTDDVEAHTSDASQLIPQHNYKLDVHALNSRHPGEFECREFRESILSVMPHRWDRRED 312

Query: 121 TLLKLSHFRRHKRKILKKVVG-KSTSYPFHKPEEHHPPGKDSTKKISNLIGKAATYAGSA 179
           TLLKL+HFRRHKRK LKK  G KST+YPFHKPEEH P GKD ++KI  LIGKAA YAGSA
Sbjct: 313 TLLKLAHFRRHKRKTLKKQAGSKSTAYPFHKPEEHTPAGKDLSRKIPKLIGKAARYAGSA 372

Query: 180 KSKKPVNYIPTITNYTQLWWVPNVVVAHQKEGIEAVHLASGRTVCKLHLQEGGLHADING 239
           K KK + YIPTITNYT+LWWVPNVVVAHQKEGIEA+HL +GRT+CKL L EGGLHADING
Sbjct: 373 KPKKGMQYIPTITNYTKLWWVPNVVVAHQKEGIEAIHLPTGRTLCKLSLLEGGLHADING 432

Query: 240 DGVLDHVQAVGGNGAEQTVVSGSMEVLRPCWAVATSGVPVREQLFNASICHHSPFNLFPH 299
           DGVLDHVQ VGGN  E+TVVSGSMEVL+PCWAVATSGVP+REQLFN SICHHSPFN   +
Sbjct: 433 DGVLDHVQTVGGNVGERTVVSGSMEVLKPCWAVATSGVPIREQLFNVSICHHSPFNFLHY 492

Query: 300 G-EFSRNFGRTSDVASLEVATPILIPRSDGHRHRKGSHGDVVFLTNRGEVTAYSPGLHGH 358
           G ++SR+F +  D ++LE+ATPILIPR DGH+HRKGSHGDV+FLTNRGEVT+Y+P +HGH
Sbjct: 493 GGDYSRHFAQARDTSTLEIATPILIPRDDGHKHRKGSHGDVIFLTNRGEVTSYTPDVHGH 552

Query: 359 DAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISP 418
           DA+WQWQL T+ATWSNLPSPSG+TE+ TVVPTLK FSLR+HDNQ MILAGGDQ AV+ISP
Sbjct: 553 DAVWQWQLQTEATWSNLPSPSGLTESGTVVPTLKPFSLRIHDNQPMILAGGDQAAVIISP 612

Query: 419 GGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFVQTRQPGALFFSTLVGCL 478
           GGSIL SI+LP+ PTHAL+ +DFSNDGLTDVI+MTSNGVYGFVQTRQPGALFFS+LVGCL
Sbjct: 613 GGSILASIELPSQPTHALITDDFSNDGLTDVIVMTSNGVYGFVQTRQPGALFFSSLVGCL 672

Query: 479 IVVMGVIFVTQHLNSVKAKPRASSGL 504
           +VVM VIFVTQHLNS++ KPR SS  
Sbjct: 673 LVVMAVIFVTQHLNSIQGKPRPSSSF 698

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	505
TAIR|locus:2080988	698	AT3G51050 "AT3G51050" [Arabido	0.994	0.719	0.777	3.6e-224
DICTYBASE|DDB_G0275747	799	DDB_G0275747 "FG-GAP repeat-co	0.461	0.291	0.267	6.8e-30

TAIR|locus:2080988 AT3G51050 "AT3G51050" [Arabidopsis thaliana (taxid:3702)]

 Score = 2164 (766.8 bits), Expect = 3.6e-224, P = 3.6e-224
 Identities = 392/504 (77%), Positives = 451/504 (89%)

Query:     1 MEMQPHTIMDPFEEIGLAEKNAEQHRRSASEKEASENSGTVDLRHFAFYAFAGRSGLLRW 60
             MEMQP+  MDPFEE+G+  +NA+QHRRSA+E +ASE+SG ++LRHF+ YAFAG++GLLRW
Sbjct:   193 MEMQPYNHMDPFEELGMTAQNADQHRRSATENQASEDSGAINLRHFSVYAFAGKTGLLRW 252

Query:    61 SRKNENIEAQPTDASQLIPQHNYKLDVHALNSRHPGEFECREFRESVLGVMPHHWDRRED 120
             S+K +++EA  +DASQLIPQHNYKLDVHALNSRHPGEFECREFRES+L VMPH WDRRED
Sbjct:   253 SKKTDDVEAHTSDASQLIPQHNYKLDVHALNSRHPGEFECREFRESILSVMPHRWDRRED 312

Query:   121 TLLKLSHFRRHKRKILKKVVG-KSTSYPFHKPEEHHPPGKDSTKKISNLIGKAATYAGSA 179
             TLLKL+HFRRHKRK LKK  G KST+YPFHKPEEH P GKD ++KI  LIGKAA YAGSA
Sbjct:   313 TLLKLAHFRRHKRKTLKKQAGSKSTAYPFHKPEEHTPAGKDLSRKIPKLIGKAARYAGSA 372

Query:   180 KSKKPVNYIPTITNYTQLWWVPNVVVAHQKEGIEAVHLASGRTVCKLHLQEGGLHADING 239
             K KK + YIPTITNYT+LWWVPNVVVAHQKEGIEA+HL +GRT+CKL L EGGLHADING
Sbjct:   373 KPKKGMQYIPTITNYTKLWWVPNVVVAHQKEGIEAIHLPTGRTLCKLSLLEGGLHADING 432

Query:   240 DGVLDHVQAVGGNGAEQTVVSGSMEVLRPCWAVATSGVPVREQLFNASICHHSPFNLFPH 299
             DGVLDHVQ VGGN  E+TVVSGSMEVL+PCWAVATSGVP+REQLFN SICHHSPFN   +
Sbjct:   433 DGVLDHVQTVGGNVGERTVVSGSMEVLKPCWAVATSGVPIREQLFNVSICHHSPFNFLHY 492

Query:   300 G-EFSRNFGRTSDVASLEVATPILIPRSDGHRHRKGSHGDVVFLTNRGEVTAYSPGLHGH 358
             G ++SR+F +  D ++LE+ATPILIPR DGH+HRKGSHGDV+FLTNRGEVT+Y+P +HGH
Sbjct:   493 GGDYSRHFAQARDTSTLEIATPILIPRDDGHKHRKGSHGDVIFLTNRGEVTSYTPDVHGH 552

Query:   359 DAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISP 418
             DA+WQWQL T+ATWSNLPSPSG+TE+ TVVPTLK FSLR+HDNQ MILAGGDQ AV+ISP
Sbjct:   553 DAVWQWQLQTEATWSNLPSPSGLTESGTVVPTLKPFSLRIHDNQPMILAGGDQAAVIISP 612

Query:   419 GGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFVQTRQPGALFFSTLVGCL 478
             GGSIL SI+LP+ PTHAL+ +DFSNDGLTDVI+MTSNGVYGFVQTRQPGALFFS+LVGCL
Sbjct:   613 GGSILASIELPSQPTHALITDDFSNDGLTDVIVMTSNGVYGFVQTRQPGALFFSSLVGCL 672

Query:   479 IVVMGVIFVTQHLNSVKAKPRASS 502
             +VVM VIFVTQHLNS++ KPR SS
Sbjct:   673 LVVMAVIFVTQHLNSIQGKPRPSS 696

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0007160 "cell-matrix adhesion" evidence=ISS

GO:0008305 "integrin complex" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006486 "protein glycosylation" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

DICTYBASE|DDB_G0275747 DDB_G0275747 "FG-GAP repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 223 (83.6 bits), Expect = 6.8e-30, Sum P(3) = 6.8e-30
 Identities = 74/277 (26%), Positives = 126/277 (45%)

Query:     1 MEMQPHTIMDPFEEIGLAEKNAEQHRRSASEKEASENSGTV--DLRHFAFYAFAGRSGLL 58
             ME  P  I  P   I +  +  E  +    +++   +S T   +  HF+++++  + G  
Sbjct:   217 MEPLPGVIHKPHYSIPMFGEKVETDKDHDHKRDDDHDSFTAHREENHFSYFSYDCKDGYK 276

Query:    59 RWSRKNENIEAQ-P--TDASQL---IPQHNYKLDVHALNSRHPGEFECREFRESVLGVMP 112
             RWS +  + + + P  T+  +    I  H++K  + +    H GE + + +R+S+L  +P
Sbjct:   277 RWSHEENDFKPENPHTTEEHKKDSDISLHSFKQHIFS-QLEHLGEVDWKTYRDSILASLP 335

Query:   113 HHWDRREDTLLKLSHFRRHKRKILKKVVGKSTSYPFHKPEEHHPPGKDSTKKISNLIGKA 172
             H W    DT L+  HF   ++KI    +  +T+              D T  I+ LIG +
Sbjct:   336 HKWSSNFDTKLEPRHF---EKKI--NTIRGTTN-------------NDGTNVINGLIGSS 377

Query:   173 ATYAGSAKSKKPVNY--IPTITNYTQLWWV------PNVVVAHQKEGIEAVHLASGRTVC 224
              T           N+     ++   Q+ +       PNV+V H K GIE +H+ SG+T+C
Sbjct:   378 NTLNNEMIEFYSKNFDTFSILSKKDQISFKSQHIENPNVIVTHHKYGIEVIHIVSGKTLC 437

Query:   225 KLHLQEGGLHAD---------INGDGVLDHVQAVGGN 252
             KL L     + D         +NGDGVLD V++  GN
Sbjct:   438 KLVLDGTDFYTDSNRYIVYLDLNGDGVLDQVRSYAGN 474

GO:0031153 "slug development involved in sorocarp development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	505
PF01839	34	FG-GAP: FG-GAP repeat; InterPro: IPR013517 This re	95.82
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	93.06
PF14782	431	BBS2_C: Ciliary BBSome complex subunit 2, C-termin	92.83
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	92.44
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	92.41
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	92.17
PF13517	61	VCBS: Repeat domain in Vibrio, Colwellia, Bradyrhi	92.01
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	91.63
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	91.59
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	90.59
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	90.58
PF13517	61	VCBS: Repeat domain in Vibrio, Colwellia, Bradyrhi	90.58
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	90.29
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	87.86
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	82.87

>PF01839 FG-GAP: FG-GAP repeat; InterPro: IPR013517 This region contains the extracellular repeat that is found in up to seven copies in alpha integrins

Probab=95.82  E-value=0.0093  Score=42.84  Aligned_cols=25  Identities=32%  Similarity=0.647  Sum_probs=18.4

Q ss_pred             cEEeecCCCCcccEEE----ecCCe-EEEE
Q 010629          436 LVCEDFSNDGLTDVIL----MTSNG-VYGF  460 (505)
Q Consensus       436 ~Iv~DfngDG~nDiIV----vT~~G-iygf  460 (505)
                      +-+.||||||..||+|    .+..| +|.|
T Consensus         5 ~~~gD~ngDG~~Dl~vg~~~~~~~G~v~v~   34 (34)
T PF01839_consen    5 VAVGDFNGDGYDDLAVGYNNGGNAGAVYVY   34 (34)
T ss_dssp             EEEESTSSSSS-EEEEETTTTCTCBEEEEE
T ss_pred             cEEEEcCCCCCccEEEEcCCCCcCCEEEEC
Confidence            5578999999999999    45555 6554

This repeat has been predicted to fold into a beta propeller structure []. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat []. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding []. A putative Ca2+ binding motif is found in some of the repeats. ; PDB: 1L5G_A 3IJE_A 1M1X_A 1JV2_A 1U8C_A 3V4P_C 3V4V_C 3VI3_A 3VI4_C 2VDN_A ....

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=93.06  E-value=0.63  Score=47.77  Aligned_cols=92  Identities=17%  Similarity=0.219  Sum_probs=60.9

Q ss_pred             EEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEeecceEEEECC
Q 010629          339 VVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISP  418 (505)
Q Consensus       339 ~vFL~s~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~ils~  418 (505)
                      +++...+|.|.|++..    +|...|+..++......             |.+        +...++++..+..+.-+|.
T Consensus        68 v~v~~~~g~v~a~d~~----tG~~~W~~~~~~~~~~~-------------p~v--------~~~~v~v~~~~g~l~ald~  122 (377)
T TIGR03300        68 VYAADADGTVVALDAE----TGKRLWRVDLDERLSGG-------------VGA--------DGGLVFVGTEKGEVIALDA  122 (377)
T ss_pred             EEEECCCCeEEEEEcc----CCcEeeeecCCCCcccc-------------eEE--------cCCEEEEEcCCCEEEEEEC
Confidence            4455567999999953    33899998776532111             111        1223344445567788887


Q ss_pred             -CCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCe-EEEEE
Q 010629          419 -GGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNG-VYGFV  461 (505)
Q Consensus       419 -~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~~G-iygfv  461 (505)
                       +|+++-+..++.++.++|++.|    +  -++|.+.+| +|+|=
T Consensus       123 ~tG~~~W~~~~~~~~~~~p~v~~----~--~v~v~~~~g~l~a~d  161 (377)
T TIGR03300       123 EDGKELWRAKLSSEVLSPPLVAN----G--LVVVRTNDGRLTALD  161 (377)
T ss_pred             CCCcEeeeeccCceeecCCEEEC----C--EEEEECCCCeEEEEE
Confidence             9999999999988888888742    2  266777777 88874

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF14782 BBS2_C: Ciliary BBSome complex subunit 2, C-terminal

Probab=92.83  E-value=0.12  Score=56.21  Aligned_cols=42  Identities=26%  Similarity=0.543  Sum_probs=39.0

Q ss_pred             CCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCe-EEEEE
Q 010629          419 GGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNG-VYGFV  461 (505)
Q Consensus       419 ~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~~G-iygfv  461 (505)
                      +|.||-...|.+ |+|.++++|+-.||.++||++|.|| |-||.
T Consensus         1 tGeVlfKd~~~s-~VA~vv~~DYR~dG~~~lI~csvdGeVrGy~   43 (431)
T PF14782_consen    1 TGEVLFKDTFSS-PVAGVVVADYRMDGKPQLICCSVDGEVRGYL   43 (431)
T ss_pred             CceEEEEecccc-hhheeeeeccccCCCceEEEEEcCCEEEEec
Confidence            588888888888 8999999999999999999999999 99993

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=92.44  E-value=17  Score=38.73  Aligned_cols=201  Identities=14%  Similarity=0.208  Sum_probs=117.4

Q ss_pred             cCceeEEEccCCCeeEEEecCCC-------------------Cee-eeccCCCceeEEEeeecCCceeeeecCCcccccC
Q 010629          209 KEGIEAVHLASGRTVCKLHLQEG-------------------GLH-ADINGDGVLDHVQAVGGNGAEQTVVSGSMEVLRP  268 (505)
Q Consensus       209 ~~GIEViHL~SGrtlckL~L~~~-------------------~l~-aDINgDGVlD~V~a~gg~~~e~~~~~g~~~~~~~  268 (505)
                      ..-|+|+.++|++++-+|.+++.                   -+| ++++.|..|--|-+..+.-..+.       ..++
T Consensus        76 ~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei-------~vp~  148 (352)
T TIGR02658        76 TDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMM-------DVPD  148 (352)
T ss_pred             CCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEE-------eCCC
Confidence            46799999999999998887432                   244 46666666655544322222222       2377


Q ss_pred             ceEEEEecCCCcccceeccccCCCCCCCccCCccccCcCCCCCCCcccccCceE--------eeCCCCCCCCccccccEE
Q 010629          269 CWAVATSGVPVREQLFNASICHHSPFNLFPHGEFSRNFGRTSDVASLEVATPIL--------IPRSDGHRHRKGSHGDVV  340 (505)
Q Consensus       269 C~avatSGvP~re~LFn~sIC~~~~f~~f~~~~~~r~~~~~~d~~~~ev~~Pli--------i~~~~g~~~r~~~~~D~v  340 (505)
                      |+.+-.++    |.-|- .+|....+..+...         .+ +...+.+..+        +.++  .-  ....+-.+
T Consensus       149 ~~~vy~t~----e~~~~-~~~~Dg~~~~v~~d---------~~-g~~~~~~~~vf~~~~~~v~~rP--~~--~~~dg~~~  209 (352)
T TIGR02658       149 CYHIFPTA----NDTFF-MHCRDGSLAKVGYG---------TK-GNPKIKPTEVFHPEDEYLINHP--AY--SNKSGRLV  209 (352)
T ss_pred             CcEEEEec----CCccE-EEeecCceEEEEec---------CC-CceEEeeeeeecCCccccccCC--ce--EcCCCcEE
Confidence            98887652    44555 77876554222110         01 1111111111        1121  00  01124578


Q ss_pred             EEecCceEEEecCCCCCCcceeeeeecccc----ccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEE---------
Q 010629          341 FLTNRGEVTAYSPGLHGHDAIWQWQLLTDA----TWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILA---------  407 (505)
Q Consensus       341 FL~s~G~vTs~~~~g~g~~~~~~Wq~~T~a----~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA---------  407 (505)
                      |.++.|.|+-++..+.+-.....|.+.+.+    .|...    |      .    +++.+.+.+..=||++         
T Consensus       210 ~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~----g------~----q~ia~~~dg~~lyV~~~~~~~~thk  275 (352)
T TIGR02658       210 WPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPG----G------W----QQVAYHRARDRIYLLADQRAKWTHK  275 (352)
T ss_pred             EEecCCeEEEEecCCCcceecceeeeccccccccccCCC----c------c----eeEEEcCCCCEEEEEecCCcccccc
Confidence            999999999999766444445667765543    45432    1      1    2255555666666665         


Q ss_pred             eecceEEEECC-CCCEEEEEeCCCCCCcccEEeecCCCCcccEEEec
Q 010629          408 GGDQEAVVISP-GGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMT  453 (505)
Q Consensus       408 ~Ge~~~~ils~-~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT  453 (505)
                      .|..++.++|. ++++++.+++...|    .-.-|+.||..=+.+..
T Consensus       276 ~~~~~V~ViD~~t~kvi~~i~vG~~~----~~iavS~Dgkp~lyvtn  318 (352)
T TIGR02658       276 TASRFLFVVDAKTGKRLRKIELGHEI----DSINVSQDAKPLLYALS  318 (352)
T ss_pred             CCCCEEEEEECCCCeEEEEEeCCCce----eeEEECCCCCeEEEEeC
Confidence            45579999997 99999999997643    33447888775555555

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=92.41  E-value=14  Score=40.97  Aligned_cols=58  Identities=22%  Similarity=0.344  Sum_probs=43.0

Q ss_pred             eEEEECC-CCCEEEEEeCCC------CCCcccEEeecCCCCc-ccE-EEecCCeEEEEEEeccCChhh
Q 010629          412 EAVVISP-GGSILTSIDLPA------PPTHALVCEDFSNDGL-TDV-ILMTSNGVYGFVQTRQPGALF  470 (505)
Q Consensus       412 ~~~ils~-~G~vl~s~~Lp~------pP~ap~Iv~DfngDG~-nDi-IVvT~~Giygfv~~~~~g~~~  470 (505)
                      +++-||. +|++.=.++.-.      =..++|++.|++.||. -++ ++.|++| +-|++-|.+|-.+
T Consensus       272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G-~~~vlDr~tG~~i  338 (527)
T TIGR03075       272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNG-FFYVLDRTNGKLL  338 (527)
T ss_pred             eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCc-eEEEEECCCCcee
Confidence            6777787 899988877733      3567788889877775 354 4778888 5689999999654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF01011 PQQ: PQQ enzyme repeat family

Probab=92.17  E-value=0.12  Score=37.17  Aligned_cols=22  Identities=18%  Similarity=0.366  Sum_probs=19.4

Q ss_pred             EEEeeecCCccceeceecCCCc
Q 010629           46 FAFYAFAGRSGLLRWSRKNENI   67 (505)
Q Consensus        46 fsyyAf~g~tG~~RW~h~~~d~   67 (505)
                      -..||||.+||++.|+++.+..
T Consensus        10 g~l~AlD~~TG~~~W~~~~~~~   31 (38)
T PF01011_consen   10 GYLYALDAKTGKVLWKFQTGPP   31 (38)
T ss_dssp             SEEEEEETTTTSEEEEEESSSG
T ss_pred             CEEEEEECCCCCEEEeeeCCCC
Confidence            3689999999999999998753

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF13517 VCBS: Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella; PDB: 2C25_A 2BWR_B 2C4D_A 2BWM_A

Probab=92.01  E-value=0.14  Score=39.53  Aligned_cols=25  Identities=28%  Similarity=0.674  Sum_probs=18.6

Q ss_pred             ecCCCCcccEEEecCCeEEEEEEec
Q 010629          440 DFSNDGLTDVILMTSNGVYGFVQTR  464 (505)
Q Consensus       440 DfngDG~nDiIVvT~~Giygfv~~~  464 (505)
                      ||||||..||++.....++-|.+..
T Consensus         1 D~ngDG~~Div~~~~~~~~~~~~~~   25 (61)
T PF13517_consen    1 DFNGDGRPDIVVANDGSVYVYLNDG   25 (61)
T ss_dssp             -SSSSSS-EEEEE-SSSEEEEEB-S
T ss_pred             CCCCCCCccEEEEeCCCeEEEEECC
Confidence            8999999999999977788887765

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=91.63  E-value=1.2  Score=41.87  Aligned_cols=88  Identities=24%  Similarity=0.387  Sum_probs=57.1

Q ss_pred             cCceEEEecC-CCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEeecceEEEECC-CCC
Q 010629          344 NRGEVTAYSP-GLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISP-GGS  421 (505)
Q Consensus       344 s~G~vTs~~~-~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~ils~-~G~  421 (505)
                      ++|.|+|+++ .|     ...|+...+..+.         . ....|.        ....-++++.++..+..+|. +|+
T Consensus         1 ~~g~l~~~d~~tG-----~~~W~~~~~~~~~---------~-~~~~~~--------~~~~~v~~~~~~~~l~~~d~~tG~   57 (238)
T PF13360_consen    1 DDGTLSALDPRTG-----KELWSYDLGPGIG---------G-PVATAV--------PDGGRVYVASGDGNLYALDAKTGK   57 (238)
T ss_dssp             -TSEEEEEETTTT-----EEEEEEECSSSCS---------S-EEETEE--------EETTEEEEEETTSEEEEEETTTSE
T ss_pred             CCCEEEEEECCCC-----CEEEEEECCCCCC---------C-ccceEE--------EeCCEEEEEcCCCEEEEEECCCCC
Confidence            4799999998 45     9999985533210         0 110011        12233455558899999997 999


Q ss_pred             EEEEEeCCCCCCcccEEeecCCCCcccEEEecCCe-EEEE
Q 010629          422 ILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNG-VYGF  460 (505)
Q Consensus       422 vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~~G-iygf  460 (505)
                      ++-+.+++.+...+|++.+      +.|+|.+.+| +|+|
T Consensus        58 ~~W~~~~~~~~~~~~~~~~------~~v~v~~~~~~l~~~   91 (238)
T PF13360_consen   58 VLWRFDLPGPISGAPVVDG------GRVYVGTSDGSLYAL   91 (238)
T ss_dssp             EEEEEECSSCGGSGEEEET------TEEEEEETTSEEEEE
T ss_pred             EEEEeeccccccceeeecc------cccccccceeeeEec
Confidence            9999999888777764432      3456676665 6665

...

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=91.59  E-value=3.1  Score=42.67  Aligned_cols=108  Identities=16%  Similarity=0.211  Sum_probs=63.2

Q ss_pred             EEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeee----eeeEEeecccCC-------------c
Q 010629          339 VVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVV----PTLKAFSLRVHD-------------N  401 (505)
Q Consensus       339 ~vFL~s~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~----PsL~af~lr~~~-------------~  401 (505)
                      +++.+.+|.+.|++..    .+...|+.........  ...+.   ..++    ..|.++......             .
T Consensus       244 vy~~~~~g~l~a~d~~----tG~~~W~~~~~~~~~p--~~~~~---~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~s  314 (377)
T TIGR03300       244 VYAVSYQGRVAALDLR----SGRVLWKRDASSYQGP--AVDDN---RLYVTDADGVVVALDRRSGSELWKNDELKYRQLT  314 (377)
T ss_pred             EEEEEcCCEEEEEECC----CCcEEEeeccCCccCc--eEeCC---EEEEECCCCeEEEEECCCCcEEEccccccCCccc
Confidence            4445568999999974    3478998875432111  11110   1111    234343332110             0


Q ss_pred             -----cceEEEee-cceEEEECC-CCCEEEEEeCCCC-CCcccEEeecCCCCcccEEEecCCe-EEEEE
Q 010629          402 -----QQMILAGG-DQEAVVISP-GGSILTSIDLPAP-PTHALVCEDFSNDGLTDVILMTSNG-VYGFV  461 (505)
Q Consensus       402 -----~~~IlA~G-e~~~~ils~-~G~vl~s~~Lp~p-P~ap~Iv~DfngDG~nDiIVvT~~G-iygfv  461 (505)
                           ...|++.. +-.+.++|. +|+++.+.+++.. -.+.|++.|      +-|+|.|.+| +|+|.
T Consensus       315 sp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~------~~l~v~~~dG~l~~~~  377 (377)
T TIGR03300       315 APAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVG------DGLLVQTRDGDLYAFR  377 (377)
T ss_pred             cCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEEC------CEEEEEeCCceEEEeC
Confidence                 12233322 245677787 8999999999884 356666665      3499999999 98873

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=90.59  E-value=1.7  Score=45.39  Aligned_cols=104  Identities=14%  Similarity=0.208  Sum_probs=61.5

Q ss_pred             cEEEE-ecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEeecceEEEE
Q 010629          338 DVVFL-TNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVI  416 (505)
Q Consensus       338 D~vFL-~s~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~il  416 (505)
                      |.||+ ..+|.|.|++..    +|+.+|+.++...-...   +. ..+..+-.++..      ....+++...+..+.-+
T Consensus        70 ~~vy~~~~~g~l~ald~~----tG~~~W~~~~~~~~~~~---~~-~~~~~~~~~~~v------~~~~v~v~~~~g~l~al  135 (394)
T PRK11138         70 NKVYAADRAGLVKALDAD----TGKEIWSVDLSEKDGWF---SK-NKSALLSGGVTV------AGGKVYIGSEKGQVYAL  135 (394)
T ss_pred             CEEEEECCCCeEEEEECC----CCcEeeEEcCCCccccc---cc-ccccccccccEE------ECCEEEEEcCCCEEEEE
Confidence            44555 567999999964    33899998776511000   00 000000011111      11233333344567778


Q ss_pred             CC-CCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCe-EEEEE
Q 010629          417 SP-GGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNG-VYGFV  461 (505)
Q Consensus       417 s~-~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~~G-iygfv  461 (505)
                      |. +|+++=+.+++.++.+.|++.|    |  -|+|.|.+| +|+|-
T Consensus       136 d~~tG~~~W~~~~~~~~~ssP~v~~----~--~v~v~~~~g~l~ald  176 (394)
T PRK11138        136 NAEDGEVAWQTKVAGEALSRPVVSD----G--LVLVHTSNGMLQALN  176 (394)
T ss_pred             ECCCCCCcccccCCCceecCCEEEC----C--EEEEECCCCEEEEEE
Confidence            96 9999999999998888887763    2  266777777 78873

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=90.58  E-value=2.9  Score=43.58  Aligned_cols=94  Identities=13%  Similarity=0.213  Sum_probs=54.5

Q ss_pred             cEEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEeecceEEEEC
Q 010629          338 DVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVIS  417 (505)
Q Consensus       338 D~vFL~s~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~ils  417 (505)
                      .+++.+.+|.|.|++..    ++..+|+......+..            .-|.+.      +  .-++++..+-.+.++|
T Consensus       296 ~vy~~~~~g~l~ald~~----tG~~~W~~~~~~~~~~------------~sp~v~------~--g~l~v~~~~G~l~~ld  351 (394)
T PRK11138        296 RIYLVDQNDRVYALDTR----GGVELWSQSDLLHRLL------------TAPVLY------N--GYLVVGDSEGYLHWIN  351 (394)
T ss_pred             EEEEEcCCCeEEEEECC----CCcEEEcccccCCCcc------------cCCEEE------C--CEEEEEeCCCEEEEEE
Confidence            45556668888888864    2366776432111100            011111      1  1223333344577789


Q ss_pred             C-CCCEEEEEeCCC-CCCcccEEeecCCCCcccEEEecCCe-EEEEE
Q 010629          418 P-GGSILTSIDLPA-PPTHALVCEDFSNDGLTDVILMTSNG-VYGFV  461 (505)
Q Consensus       418 ~-~G~vl~s~~Lp~-pP~ap~Iv~DfngDG~nDiIVvT~~G-iygfv  461 (505)
                      + +|+++.+.+++. .-.+.|++.    ||  .|+|.|.+| +|.|-
T Consensus       352 ~~tG~~~~~~~~~~~~~~s~P~~~----~~--~l~v~t~~G~l~~~~  392 (394)
T PRK11138        352 REDGRFVAQQKVDSSGFLSEPVVA----DD--KLLIQARDGTVYAIT  392 (394)
T ss_pred             CCCCCEEEEEEcCCCcceeCCEEE----CC--EEEEEeCCceEEEEe
Confidence            7 999999999864 334445543    22  599999998 88864

>PF13517 VCBS: Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella; PDB: 2C25_A 2BWR_B 2C4D_A 2BWM_A

Probab=90.58  E-value=0.8  Score=35.33  Aligned_cols=50  Identities=18%  Similarity=0.388  Sum_probs=25.8

Q ss_pred             ccceEEEeecceEEEE-C-CCCCE--EEEEeCCC-CCCcccEEeecCCCCcccEEE
Q 010629          401 NQQMILAGGDQEAVVI-S-PGGSI--LTSIDLPA-PPTHALVCEDFSNDGLTDVIL  451 (505)
Q Consensus       401 ~~~~IlA~Ge~~~~il-s-~~G~v--l~s~~Lp~-pP~ap~Iv~DfngDG~nDiIV  451 (505)
                      ..+++++ ++.+..|. . .+|+.  .....++. .....+.+.|||+||..||+|
T Consensus         7 ~~Div~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~D~d~DG~~Di~V   61 (61)
T PF13517_consen    7 RPDIVVA-NDGSVYVYLNDGDGTFQFPAQIPFSSSGSGWSVAFADIDGDGKPDILV   61 (61)
T ss_dssp             S-EEEEE--SSSEEEEEB-SSS-BEEEEEEBTTCSGGTTTTCEE-SSSSSS-EEE-
T ss_pred             CccEEEE-eCCCeEEEEECCCCCeEEeeeEeeCCCCCcceeEEEEccCCCcccEEC
Confidence            3454444 45444444 2 35554  33444433 223468899999999999997

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=90.29  E-value=2  Score=46.63  Aligned_cols=87  Identities=13%  Similarity=0.082  Sum_probs=54.9

Q ss_pred             cEEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEeecceEEEEC
Q 010629          338 DVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVIS  417 (505)
Q Consensus       338 D~vFL~s~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~ils  417 (505)
                      .++|.+.+|.|.|++..    .+..+|+..+.......            .|.+..-+....+...++++..+..+.-+|
T Consensus        63 ~vy~~~~~g~l~AlD~~----tG~~~W~~~~~~~~~~~------------~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD  126 (488)
T cd00216          63 DMYFTTSHSALFALDAA----TGKVLWRYDPKLPADRG------------CCDVVNRGVAYWDPRKVFFGTFDGRLVALD  126 (488)
T ss_pred             EEEEeCCCCcEEEEECC----CChhhceeCCCCCcccc------------ccccccCCcEEccCCeEEEecCCCeEEEEE
Confidence            35566668999999963    34899998876541110            010101011011124556666677788889


Q ss_pred             C-CCCEEEEEeCCCC------CCcccEEee
Q 010629          418 P-GGSILTSIDLPAP------PTHALVCED  440 (505)
Q Consensus       418 ~-~G~vl~s~~Lp~p------P~ap~Iv~D  440 (505)
                      . +|+++-.++++.+      ..++|++.|
T Consensus       127 ~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~  156 (488)
T cd00216         127 AETGKQVWKFGNNDQVPPGYTMTGAPTIVK  156 (488)
T ss_pred             CCCCCEeeeecCCCCcCcceEecCCCEEEC
Confidence            7 9999999999876      567777765

The alignment model contains an 8-bladed beta-propeller.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=87.86  E-value=14  Score=34.67  Aligned_cols=102  Identities=21%  Similarity=0.383  Sum_probs=57.4

Q ss_pred             ccEEEEecCceEEEecCCCCCCcceeeeee-ccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEeecceEEE
Q 010629          337 GDVVFLTNRGEVTAYSPGLHGHDAIWQWQL-LTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVV  415 (505)
Q Consensus       337 ~D~vFL~s~G~vTs~~~~g~g~~~~~~Wq~-~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~i  415 (505)
                      ..+++.+.+|.|.+++..    +|..+|+. .+.......       . ....|.+.        ...++++.....++.
T Consensus        77 ~~v~v~~~~~~l~~~d~~----tG~~~W~~~~~~~~~~~~-------~-~~~~~~~~--------~~~~~~~~~~g~l~~  136 (238)
T PF13360_consen   77 GRVYVGTSDGSLYALDAK----TGKVLWSIYLTSSPPAGV-------R-SSSSPAVD--------GDRLYVGTSSGKLVA  136 (238)
T ss_dssp             TEEEEEETTSEEEEEETT----TSCEEEEEEE-SSCTCST-------B---SEEEEE--------TTEEEEEETCSEEEE
T ss_pred             cccccccceeeeEecccC----Ccceeeeecccccccccc-------c-cccCceEe--------cCEEEEEeccCcEEE
Confidence            456777788999999932    34999994 444211110       0 11111111        333444444788999


Q ss_pred             ECC-CCCEEEEEeCCCCCCcccE--EeecC-----CCCcccEEEecCCe-EEEE
Q 010629          416 ISP-GGSILTSIDLPAPPTHALV--CEDFS-----NDGLTDVILMTSNG-VYGF  460 (505)
Q Consensus       416 ls~-~G~vl~s~~Lp~pP~ap~I--v~Dfn-----gDG~nDiIVvT~~G-iygf  460 (505)
                      +|+ +|+++-..+++.++..-.+  +.|.+     .+|  .|.+.+.+| ++.+
T Consensus       137 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~g~~~~~  188 (238)
T PF13360_consen  137 LDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG--RVYVSSGDGRVVAV  188 (238)
T ss_dssp             EETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT--EEEEECCTSSEEEE
T ss_pred             EecCCCcEEEEeecCCCCCCcceeeecccccceEEECC--EEEEEcCCCeEEEE
Confidence            996 9999999999776632221  11111     133  677777677 4544

...

>smart00564 PQQ beta-propeller repeat

Probab=82.87  E-value=0.92  Score=30.73  Aligned_cols=18  Identities=22%  Similarity=0.606  Sum_probs=15.9

Q ss_pred             eEEEeeecCCccceecee
Q 010629           45 HFAFYAFAGRSGLLRWSR   62 (505)
Q Consensus        45 hfsyyAf~g~tG~~RW~h   62 (505)
                      .-..||+|.+||+++|+.
T Consensus        15 ~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564       15 DGTLYALDAKTGEILWTY   32 (33)
T ss_pred             CCEEEEEEcccCcEEEEc
Confidence            357899999999999985

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	505
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	94.16
2zux_A	591	YESW protein; beta-propeller, lyase, rhamnose comp	92.5
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	91.4
2zuy_A	620	YESX protein; beta-propeller, lyase; 1.65A {Bacill	90.96
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	89.59
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	89.05
2bwr_A	401	Psathyrella velutina lectin; N-acetyl-glucosamine;	88.75
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	88.14
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	87.91
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	85.81
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	84.41
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	83.56
3k6s_A	1095	Integrin alpha-X; cell receptor, adhesion molecule	82.95
3v4v_A	597	Integrin alpha-4; cell adhesion, madcam-1, membran	82.71
2zux_A	591	YESW protein; beta-propeller, lyase, rhamnose comp	82.69
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	81.38
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	80.29

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=94.16  E-value=0.92  Score=43.67  Aligned_cols=103  Identities=17%  Similarity=0.259  Sum_probs=62.6

Q ss_pred             cEEEE-ecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEeecceEEEE
Q 010629          338 DVVFL-TNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVI  416 (505)
Q Consensus       338 D~vFL-~s~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~il  416 (505)
                      +.||+ +.+|.|.||+..    +++.+|+...+..-...    . .....+..++..      ....++++..+..+..+
T Consensus        54 ~~v~~~~~~g~v~a~d~~----tG~~~W~~~~~~~~~~~----~-~~~~~~~~~~~~------~~~~v~v~~~~g~l~a~  118 (376)
T 3q7m_A           54 NVVYAADRAGLVKALNAD----DGKEIWSVSLAEKDGWF----S-KEPALLSGGVTV------SGGHVYIGSEKAQVYAL  118 (376)
T ss_dssp             TEEEEECTTSEEEEEETT----TCCEEEEEECCC---CC----S-CCCCCEEEEEEE------ETTEEEEEETTSEEEEE
T ss_pred             CEEEEEcCCCeEEEEEcc----CCceeeeecCccccccc----c-ccCcccccCceE------eCCEEEEEcCCCEEEEE
Confidence            44555 457899999974    23899998765422100    0 000112112211      12334445555678999


Q ss_pred             CC-CCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCe-EEEEE
Q 010629          417 SP-GGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNG-VYGFV  461 (505)
Q Consensus       417 s~-~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~~G-iygfv  461 (505)
                      |. +|+++-+.+++......|++.|    |  -|+|.|.+| +|+|-
T Consensus       119 d~~tG~~~W~~~~~~~~~~~p~~~~----~--~v~v~~~~g~l~~~d  159 (376)
T 3q7m_A          119 NTSDGTVAWQTKVAGEALSRPVVSD----G--LVLIHTSNGQLQALN  159 (376)
T ss_dssp             ETTTCCEEEEEECSSCCCSCCEEET----T--EEEEECTTSEEEEEE
T ss_pred             ECCCCCEEEEEeCCCceEcCCEEEC----C--EEEEEcCCCeEEEEE
Confidence            97 8999999999988777777652    2  466667776 88774

>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*

Probab=92.50  E-value=0.35  Score=52.97  Aligned_cols=60  Identities=23%  Similarity=0.294  Sum_probs=47.6

Q ss_pred             cCCccceEEEe--------------ecceEEEECCCCCEEEEEeCCCC-C----CcccEEeecCCCCcccEEEecCCeE
Q 010629          398 VHDNQQMILAG--------------GDQEAVVISPGGSILTSIDLPAP-P----THALVCEDFSNDGLTDVILMTSNGV  457 (505)
Q Consensus       398 ~~~~~~~IlA~--------------Ge~~~~ils~~G~vl~s~~Lp~p-P----~ap~Iv~DfngDG~nDiIVvT~~Gi  457 (505)
                      -++..++||+.              |...+.+.+.+|++|-.+.|+.- .    -.+++|.|||+||..+|+|.|.+|.
T Consensus       124 GDG~~EiVv~~dp~n~~d~s~~g~tg~~~l~aY~ldG~~LW~idlg~ni~aGa~yt~~~V~DlDGDGkaEIvv~TadGt  202 (591)
T 2zux_A          124 GDGQYELILKWDPSNSKDNSQDGYTGDVLIDAYKLDGTKLWRINLGKNIRAGAHYTQFMVYDLDGDGKAEVAMKTADGT  202 (591)
T ss_dssp             SSSSCEEEEEEEETTCCCTTCCSCCCCCEEEEECTTSCEEEEEECCTTSCCSTTSCCCEEECSSSSSSCEEEEEECTTC
T ss_pred             CCCCEEEEEEECCcccccccccCcCCCcEEEEEECCCCEEEEEcCCCCcccccccCceeEEEcCCCCcceEEEEccCCc
Confidence            34556777765              34567788999999999999642 1    2479999999999999999999885

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=91.40  E-value=2.1  Score=46.33  Aligned_cols=91  Identities=8%  Similarity=0.021  Sum_probs=54.4

Q ss_pred             ccEEEEec--CceEEEecC--CCCCCcceeeeeeccccccccCCCCCC-CCCcCeeeeeeEEeecccCCc-cc-eEEEee
Q 010629          337 GDVVFLTN--RGEVTAYSP--GLHGHDAIWQWQLLTDATWSNLPSPSG-MTEASTVVPTLKAFSLRVHDN-QQ-MILAGG  409 (505)
Q Consensus       337 ~D~vFL~s--~G~vTs~~~--~g~g~~~~~~Wq~~T~a~W~~~~~~~g-~~e~~~~~PsL~af~lr~~~~-~~-~IlA~G  409 (505)
                      .+.||+.+  +|.|.|++.  .|     +.+|+..........+.... .....   |.+.  |  ..+. .. +++.+.
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG-----~~lW~~~~~~~~~~~~~~~~~~~~~g---~av~--p--~~g~~~~rV~v~t~  129 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPG-----TILWQDKPKQNPAARAVACCDLVNRG---LAYW--P--GDGKTPALILKTQL  129 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTT-----SEEEEECCCCCGGGGGGCSSCSCCCC---CEEE--C--CCSSSCCEEEEECT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCC-----cEEEEECCCCCccccccccccccccc---eEEE--e--cCCcceeEEEEEcC
Confidence            45677766  599999997  45     89999887654321100000 00000   2211  1  1111 12 555556


Q ss_pred             cceEEEECC-CCCEEEEEeCCC-----CCCcccEEe
Q 010629          410 DQEAVVISP-GGSILTSIDLPA-----PPTHALVCE  439 (505)
Q Consensus       410 e~~~~ils~-~G~vl~s~~Lp~-----pP~ap~Iv~  439 (505)
                      +..++-||. +|+++-+..++.     ..+++|++.
T Consensus       130 dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~  165 (599)
T 1w6s_A          130 DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV  165 (599)
T ss_dssp             TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE
T ss_pred             CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE
Confidence            778888996 999999999986     566777774

>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}

Probab=90.96  E-value=0.48  Score=52.12  Aligned_cols=49  Identities=20%  Similarity=0.323  Sum_probs=40.4

Q ss_pred             ecceEEEECCCCCEEEEEeCCCCC-----CcccEEeecCCCCcccEEEecCCeE
Q 010629          409 GDQEAVVISPGGSILTSIDLPAPP-----THALVCEDFSNDGLTDVILMTSNGV  457 (505)
Q Consensus       409 Ge~~~~ils~~G~vl~s~~Lp~pP-----~ap~Iv~DfngDG~nDiIVvT~~Gi  457 (505)
                      |...+.+.+.+|++|-.+.|+.-.     -.+++|.|||+||..+|||.|.+|-
T Consensus       153 g~~~l~aY~ldG~~LW~idlg~Ni~aGahyt~~~V~DlDGDGkaEIvv~TadGt  206 (620)
T 2zuy_A          153 GEVLIDAYKLDGTFLWRINLGRNIRAGAHYTQFMVYDLDGDGKAEIAMKTADGT  206 (620)
T ss_dssp             CCCEEEEECTTSCEEEEEECCTTSCCSTTSCCCEEECSSSSSSCEEEEEECTTC
T ss_pred             CCcEEEEEECCCCEEEEEcCCCCcccccccCceeEEEcCCCCcceEEEEccCCc
Confidence            345677888999999999985422     2488999999999999999999873

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=89.59  E-value=3.1  Score=39.92  Aligned_cols=93  Identities=16%  Similarity=0.272  Sum_probs=58.1

Q ss_pred             cEEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEeecceEEEEC
Q 010629          338 DVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVIS  417 (505)
Q Consensus       338 D~vFL~s~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~ils  417 (505)
                      .+++.+.+|.|.|++..    +++.+|+...+..-             ..-|.+.        ...+++++++..+..+|
T Consensus       105 ~v~v~~~~g~l~a~d~~----tG~~~W~~~~~~~~-------------~~~p~~~--------~~~v~v~~~~g~l~~~d  159 (376)
T 3q7m_A          105 HVYIGSEKAQVYALNTS----DGTVAWQTKVAGEA-------------LSRPVVS--------DGLVLIHTSNGQLQALN  159 (376)
T ss_dssp             EEEEEETTSEEEEEETT----TCCEEEEEECSSCC-------------CSCCEEE--------TTEEEEECTTSEEEEEE
T ss_pred             EEEEEcCCCEEEEEECC----CCCEEEEEeCCCce-------------EcCCEEE--------CCEEEEEcCCCeEEEEE
Confidence            45666678999999974    23899998664311             0112111        23455556667799999


Q ss_pred             C-CCCEEEEEeCCCCCC-----cccEEeecCCCCcccEEEecCCe-EEEEE
Q 010629          418 P-GGSILTSIDLPAPPT-----HALVCEDFSNDGLTDVILMTSNG-VYGFV  461 (505)
Q Consensus       418 ~-~G~vl~s~~Lp~pP~-----ap~Iv~DfngDG~nDiIVvT~~G-iygfv  461 (505)
                      + +|+++-...++.++.     ..|++.    +|  -|++.|.+| +|+|-
T Consensus       160 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~----~~--~v~~g~~~g~l~~~d  204 (376)
T 3q7m_A          160 EADGAVKWTVNLDMPSLSLRGESAPTTA----FG--AAVVGGDNGRVSAVL  204 (376)
T ss_dssp             TTTCCEEEEEECCC-----CCCCCCEEE----TT--EEEECCTTTEEEEEE
T ss_pred             CCCCcEEEEEeCCCCceeecCCCCcEEE----CC--EEEEEcCCCEEEEEE
Confidence            6 999999999987763     444444    22  366666665 77773

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=89.05  E-value=3.8  Score=43.57  Aligned_cols=88  Identities=15%  Similarity=0.136  Sum_probs=52.7

Q ss_pred             ccEEEEecC--ceEEEecC--CCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEeecce
Q 010629          337 GDVVFLTNR--GEVTAYSP--GLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQE  412 (505)
Q Consensus       337 ~D~vFL~s~--G~vTs~~~--~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~  412 (505)
                      .+.||+.+.  |.|.|++.  .|     +.+|+...+......+....    ..+-.++..      ....++++..+..
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG-----~~~W~~~~~~~~~~~~~~~~----~~~~~~~~~------~~~~v~v~~~dg~  126 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPG-----KIVWQHKPKQDASTKAVMCC----DVVDRGLAY------GAGQIVKKQANGH  126 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTT-----SEEEEECCCCCGGGGGGCTT----CSCCCCCEE------ETTEEEEECTTSE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCc-----cEEEEEcCCCCccccccccc----cccccccEE------ECCEEEEEeCCCE
Confidence            456777664  99999997  45     89999876643211100000    000011111      1234455556678


Q ss_pred             EEEECC-CCCEEEEEeCCC-----CCCcccEEe
Q 010629          413 AVVISP-GGSILTSIDLPA-----PPTHALVCE  439 (505)
Q Consensus       413 ~~ils~-~G~vl~s~~Lp~-----pP~ap~Iv~  439 (505)
                      +..||. +|+++-+.+++.     ...++|++.
T Consensus       127 l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~  159 (571)
T 2ad6_A          127 LLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA  159 (571)
T ss_dssp             EEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE
T ss_pred             EEEEECCCCCEEEEecCCCCCccceeccCCEEE
Confidence            999997 999999999976     445666654

>2bwr_A Psathyrella velutina lectin; N-acetyl-glucosamine; HET: MES; 1.5A {Psathyrella velutina} PDB: 2bwm_A* 2c25_A* 2c4d_A*

Probab=88.75  E-value=2.1  Score=43.25  Aligned_cols=31  Identities=26%  Similarity=0.444  Sum_probs=26.0

Q ss_pred             CcccEEeecCCCCcccEEEecCCeEEEEEEe
Q 010629          433 THALVCEDFSNDGLTDVILMTSNGVYGFVQT  463 (505)
Q Consensus       433 ~ap~Iv~DfngDG~nDiIVvT~~Giygfv~~  463 (505)
                      ..++.+.||||||..||++...++++-|...
T Consensus       226 ~~~~~~~D~dgDG~~Dlv~~~~~~~~~~~n~  256 (401)
T 2bwr_A          226 AHPRVVADLTGDRKADILGFGVAGVYTSLNN  256 (401)
T ss_dssp             TCCEEEECSSSSSCCEEEEECSSSEEEECBC
T ss_pred             CcceeeeEcCCCCCccEEEECCCcEEEEEeC
Confidence            4567999999999999999888888777543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=88.14  E-value=18  Score=34.20  Aligned_cols=63  Identities=22%  Similarity=0.220  Sum_probs=40.8

Q ss_pred             EEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEeec-ceEEEEC
Q 010629          339 VVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGD-QEAVVIS  417 (505)
Q Consensus       339 ~vFL~s~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge-~~~~ils  417 (505)
                      +|....+|.|.||++.|     ...|+..++. |                |.-.+  .  ......+++... ..+..+|
T Consensus       139 lv~~~~~~~v~~~d~~G-----~~~w~~~~~~-~----------------~~~~~--~--~~~g~~~v~~~~~~~v~~~d  192 (276)
T 3no2_A          139 LVPLFATSEVREIAPNG-----QLLNSVKLSG-T----------------PFSSA--F--LDNGDCLVACGDAHCFVQLN  192 (276)
T ss_dssp             EEEETTTTEEEEECTTS-----CEEEEEECSS-C----------------CCEEE--E--CTTSCEEEECBTTSEEEEEC
T ss_pred             EEEecCCCEEEEECCCC-----CEEEEEECCC-C----------------cccee--E--cCCCCEEEEeCCCCeEEEEe
Confidence            44556789999999976     8999987641 1                11111  1  122344554444 4688999


Q ss_pred             CC-CCEEEEEe
Q 010629          418 PG-GSILTSID  427 (505)
Q Consensus       418 ~~-G~vl~s~~  427 (505)
                      ++ |+++-++.
T Consensus       193 ~~tG~~~w~~~  203 (276)
T 3no2_A          193 LESNRIVRRVN  203 (276)
T ss_dssp             TTTCCEEEEEE
T ss_pred             CcCCcEEEEec
Confidence            85 99998885

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=87.91  E-value=6.5  Score=36.21  Aligned_cols=113  Identities=15%  Similarity=0.184  Sum_probs=58.0

Q ss_pred             ccEEEEecCceEEEecCCCCCCcceeeeeeccccccccCCC--CCCC-----CCcC--eeee---eeEEeeccc------
Q 010629          337 GDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPS--PSGM-----TEAS--TVVP---TLKAFSLRV------  398 (505)
Q Consensus       337 ~D~vFL~s~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~--~~g~-----~e~~--~~~P---sL~af~lr~------  398 (505)
                      +.+++-+.+|.|.+|++.|     ...|+...+......+.  ..|.     ....  .+-|   .+..+++..      
T Consensus       108 ~~l~v~t~~~~l~~~d~~g-----~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~g~~~~~~~~~~~~~~~~  182 (330)
T 3hxj_A          108 DILYVTSMDGHLYAINTDG-----TEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPDGTEKWRFKTNDAITSAA  182 (330)
T ss_dssp             TEEEEECTTSEEEEECTTS-----CEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTTSCEEEEEECSSCCCSCC
T ss_pred             CEEEEEecCCEEEEEcCCC-----CEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCCCCEeEEEecCCCceeee
Confidence            3466666689999999865     78898776533211111  0111     0000  0001   011111110      


Q ss_pred             -CCccceEEEeecceEEEECCCCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecC-CeEEEE
Q 010629          399 -HDNQQMILAGGDQEAVVISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTS-NGVYGF  460 (505)
Q Consensus       399 -~~~~~~IlA~Ge~~~~ils~~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~-~Giygf  460 (505)
                       -+.+..|++.. ..+..+|++|+.+-...++...+..+.+   +.||  .|.|.|. +|+|.|
T Consensus       183 ~~d~~g~l~v~t-~~l~~~d~~g~~~~~~~~~~~~~~~~~~---~~~g--~l~v~t~~~gl~~~  240 (330)
T 3hxj_A          183 SIGKDGTIYFGS-DKVYAINPDGTEKWNFYAGYWTVTRPAI---SEDG--TIYVTSLDGHLYAI  240 (330)
T ss_dssp             EECTTCCEEEES-SSEEEECTTSCEEEEECCSSCCCSCCEE---CTTS--CEEEEETTTEEEEE
T ss_pred             EEcCCCEEEEEe-CEEEEECCCCcEEEEEccCCcceeceEE---CCCC--eEEEEcCCCeEEEE
Confidence             01122333333 6777788888888777776554444433   2343  5777776 468877

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=85.81  E-value=11  Score=40.25  Aligned_cols=108  Identities=14%  Similarity=0.123  Sum_probs=62.2

Q ss_pred             ccEEEEecC-ceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEeecceEEE
Q 010629          337 GDVVFLTNR-GEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVV  415 (505)
Q Consensus       337 ~D~vFL~s~-G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~i  415 (505)
                      .+.||+.+. +.|.|++..    .|+.+|+..+...-...  +    .-+.+-.++..      ....+++++.+..++-
T Consensus        68 ~g~vyv~~~~~~v~AlD~~----tG~~~W~~~~~~~~~~~--~----~~~~~~~g~a~------~~~~v~~~t~dg~l~A  131 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAK----TGKRLWTYNHRLPDDIR--P----CCDVVNRGAAI------YGDKVFFGTLDASVVA  131 (582)
T ss_dssp             TTEEEEEETTTEEEEEESS----SCCEEEEEECCCCTTCC--C----SSCSCCCCCEE------ETTEEEEEETTTEEEE
T ss_pred             CCEEEEEcCCCCEEEEECC----CCcEEEEEcCCCCcccc--c----ccccCCCccEE------ECCEEEEEeCCCEEEE
Confidence            456666665 679999973    34899998776432111  0    00000111111      1234555566778889


Q ss_pred             ECC-CCCEEEEEeCCCC-----CCcccEEeecCCCCcccEEEecC------Ce-EEEE
Q 010629          416 ISP-GGSILTSIDLPAP-----PTHALVCEDFSNDGLTDVILMTS------NG-VYGF  460 (505)
Q Consensus       416 ls~-~G~vl~s~~Lp~p-----P~ap~Iv~DfngDG~nDiIVvT~------~G-iygf  460 (505)
                      ||. +|+++-+..++.+     .+++|++.+=+.+|..-|+|.+.      +| ||+|
T Consensus       132 lD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~al  189 (582)
T 1flg_A          132 LNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFAR  189 (582)
T ss_dssp             EESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEE
T ss_pred             EECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEE
Confidence            997 9999999998762     44555555434455543444442      33 6666

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=84.41  E-value=16  Score=33.56  Aligned_cols=95  Identities=17%  Similarity=0.228  Sum_probs=61.2

Q ss_pred             ccEEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEeecceEEEE
Q 010629          337 GDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVI  416 (505)
Q Consensus       337 ~D~vFL~s~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~il  416 (505)
                      +.+++-+.+|-|.+|++.+     ...|+..+....               ..++..     .....+.+++.+..+..+
T Consensus       226 g~l~v~t~~~gl~~~~~~g-----~~~~~~~~~~~~---------------~~~~~~-----~~~g~l~v~t~~ggl~~~  280 (330)
T 3hxj_A          226 GTIYVTSLDGHLYAINPDG-----TEKWRFKTGKRI---------------ESSPVI-----GNTDTIYFGSYDGHLYAI  280 (330)
T ss_dssp             SCEEEEETTTEEEEECTTS-----CEEEEEECSSCC---------------CSCCEE-----CTTSCEEEECTTCEEEEE
T ss_pred             CeEEEEcCCCeEEEECCCC-----CEeEEeeCCCCc---------------cccceE-----cCCCeEEEecCCCCEEEE
Confidence            3566667789999998766     677886543211               111111     222344444444478899


Q ss_pred             CCCCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCeEEEEE
Q 010629          417 SPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFV  461 (505)
Q Consensus       417 s~~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~~Giygfv  461 (505)
                      |++|+++....++...+..+++ |  .||  -|.|.|.+|+.-+.
T Consensus       281 d~~g~~~~~~~~~~~~~~~~~~-d--~~g--~l~~gt~~G~~~~~  320 (330)
T 3hxj_A          281 NPDGTEKWNFETGSWIIATPVI-D--ENG--TIYFGTRNGKFYAL  320 (330)
T ss_dssp             CTTSCEEEEEECSSCCCSCCEE-C--TTC--CEEEECTTSCEEEE
T ss_pred             CCCCcEEEEEEcCCccccceEE-c--CCC--EEEEEcCCCeEEEE
Confidence            9999999999998876665554 3  233  49999999965553

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=83.56  E-value=8.6  Score=41.62  Aligned_cols=89  Identities=10%  Similarity=0.018  Sum_probs=52.6

Q ss_pred             ccEEEEec-CceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEeecceEEE
Q 010629          337 GDVVFLTN-RGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVV  415 (505)
Q Consensus       337 ~D~vFL~s-~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~i  415 (505)
                      .+.||+.+ +|.|.|++..    .|+.+|+......-...+...    .+.+..++..      ....+++++.+..+..
T Consensus        77 ~g~vyv~~~~~~v~AlD~~----tG~~~W~~~~~~~~~~~~~~~----~~~~~~~~a~------~~~~v~v~~~dg~l~a  142 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTR----TGNRIWTYDPQIDRSTGFKGC----CDVVNRGVAL------WKGKVYVGAWDGRLIA  142 (677)
T ss_dssp             TTEEEEECGGGCEEEEETT----TTEEEEEECCCCCGGGGGGSS----SCSCCCCCEE------ETTEEEEECTTSEEEE
T ss_pred             CCEEEEECCCCeEEEEECC----CCcEEEEEcCCCCcccccccc----ccCCCCCceE------ECCEEEEEcCCCEEEE
Confidence            34565554 5999999964    349999988764322110000    0011111111      1234455566778999


Q ss_pred             ECC-CCCEEEEEeCC------CCCCcccEEe
Q 010629          416 ISP-GGSILTSIDLP------APPTHALVCE  439 (505)
Q Consensus       416 ls~-~G~vl~s~~Lp------~pP~ap~Iv~  439 (505)
                      ||. +|+++-++.++      ...+.+|++.
T Consensus       143 lD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~  173 (677)
T 1kb0_A          143 LDAATGKEVWHQNTFEGQKGSLTITGAPRVF  173 (677)
T ss_dssp             EETTTCCEEEEEETTTTCCSSCBCCSCCEEE
T ss_pred             EECCCCCEEeeecCCcCcCcCcccccCcEEE
Confidence            997 99999999997      3455566654

>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*

Probab=82.95  E-value=2  Score=49.92  Aligned_cols=79  Identities=22%  Similarity=0.230  Sum_probs=46.8

Q ss_pred             CeeeeeeEEeecccCCccceEEEeecc---------eEEEE--CCC-CCEEEEEeCCCCC--------CcccEEeecCCC
Q 010629          385 STVVPTLKAFSLRVHDNQQMILAGGDQ---------EAVVI--SPG-GSILTSIDLPAPP--------THALVCEDFSND  444 (505)
Q Consensus       385 ~~~~PsL~af~lr~~~~~~~IlA~Ge~---------~~~il--s~~-G~vl~s~~Lp~pP--------~ap~Iv~DfngD  444 (505)
                      ..+=+++++.-+..++...+ |++|..         .+.|.  +.+ |.......|...+        .+-.+++|+|+|
T Consensus       437 s~fG~sva~~DvngDG~~Dl-lvvGAP~~~~~~~~G~Vyvy~~~~~~~~~~~~~~l~g~~~~~~~~FG~sva~~gD~NgD  515 (1095)
T 3k6s_A          437 SYFGASLCSVDVDSDGSTDL-VLIGAPHYYEQTRGGQVSVCPLPRGWRRWWCDAVLYGEQGHPWGRFGAALTVLGDVNGD  515 (1095)
T ss_dssp             SCTTSCEEEECSSSSSSCCE-EEEECSSCCSSCCCBCEEEEECCSSTTCCCSCSSCCCCCSCSSCCBTSCEEEEECSSSS
T ss_pred             CcCCceEEEEEeCCCCCccE-EEECCccccCcCCCCEEEEEEeCCCCcceeeeEEeecccCCccccCccceEeecccCCC
Confidence            56668888877777777775 344421         23333  233 2232223343332        222346899999


Q ss_pred             CcccEEEec-----CCe-EEEEEEec
Q 010629          445 GLTDVILMT-----SNG-VYGFVQTR  464 (505)
Q Consensus       445 G~nDiIVvT-----~~G-iygfv~~~  464 (505)
                      |.+||+|..     ..| +|.|....
T Consensus       516 G~~Dl~VGAP~~~~~~G~vyi~~g~~  541 (1095)
T 3k6s_A          516 KLTDVVIGAPGEEENRGAVYLFHGVL  541 (1095)
T ss_dssp             SCCEEEEECTTTTTSCCBEEEEEBCS
T ss_pred             CCcCEEEeCCcCCCCCCEEEEecCCC
Confidence            999999865     234 88886654

>3v4v_A Integrin alpha-4; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_A*

Probab=82.71  E-value=1.7  Score=47.34  Aligned_cols=79  Identities=19%  Similarity=0.289  Sum_probs=44.1

Q ss_pred             CeeeeeeEEeecccCCccceEEEee-------cceEEEE--CCCCCE--EEEEeCCCCCC-----ccc--EEeecCCCCc
Q 010629          385 STVVPTLKAFSLRVHDNQQMILAGG-------DQEAVVI--SPGGSI--LTSIDLPAPPT-----HAL--VCEDFSNDGL  446 (505)
Q Consensus       385 ~~~~PsL~af~lr~~~~~~~IlA~G-------e~~~~il--s~~G~v--l~s~~Lp~pP~-----ap~--Iv~DfngDG~  446 (505)
                      .++-.++++.-+..++...+++.+-       +-.+.|+  +.+|..  .....|+..+.     ...  .++|+|+||.
T Consensus       271 ~~fG~sva~~D~ngDG~~DlvVGap~~~~~~~~G~v~vy~~~g~g~~~~~~~~~l~g~~~~~~~FG~sva~~gDlngDG~  350 (597)
T 3v4v_A          271 SYFGASVCAVDLNADGFSDLLVGAPMQSTIREEGRVFVYINSGSGAVMNAMETNLVGSDKYAARFGESIVNLGDIDNDGF  350 (597)
T ss_dssp             CCTTSEEEEECTTCSSSCEEEEEETTCCSSSCCCEEEEEEECSSSSCEECCSSCBCTTCCTTCCTTSCEECCCCSSCSSS
T ss_pred             CCCcceEEEEeeCCCCCceEEEEcccccCCCcCCeEEEEEECCCCcceeccceEEeCCcccccccccccccccccCCCCC
Confidence            3444567766566666666554431       1123333  345642  22334554331     112  3689999999


Q ss_pred             ccEEEecC-----Ce-EEEEEEe
Q 010629          447 TDVILMTS-----NG-VYGFVQT  463 (505)
Q Consensus       447 nDiIVvT~-----~G-iygfv~~  463 (505)
                      +||+|-.-     .| +|.|...
T Consensus       351 ~Dl~VGap~~~~~~G~vyv~~g~  373 (597)
T 3v4v_A          351 EDVAIGAPQEDDLQGAIYIYNGR  373 (597)
T ss_dssp             CCEEEEETTHHHHTBEEEEECEE
T ss_pred             cceEEecccccCCCCcEEEecCC
Confidence            99999763     24 8877544

>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*

Probab=82.69  E-value=8.7  Score=42.15  Aligned_cols=91  Identities=12%  Similarity=0.179  Sum_probs=61.3

Q ss_pred             CceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEe----------------
Q 010629          345 RGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAG----------------  408 (505)
Q Consensus       345 ~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~----------------  408 (505)
                      ...|++|+-.|     +.+||+..+...     .+|     ....++.++-|.-++..++|+.+                
T Consensus       150 ~~~l~aY~ldG-----~~LW~idlg~ni-----~aG-----a~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~  214 (591)
T 2zux_A          150 DVLIDAYKLDG-----TKLWRINLGKNI-----RAG-----AHYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNAN  214 (591)
T ss_dssp             CCEEEEECTTS-----CEEEEEECCTTS-----CCS-----TTSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTT
T ss_pred             CcEEEEEECCC-----CEEEEEcCCCCc-----ccc-----cccCceeEEEcCCCCcceEEEEccCCcccCCceEecccc
Confidence            35799999865     999998876421     111     11234566666666666665553                


Q ss_pred             ------------ecceEEEECC-CCCEEEEEeCCCCCCc----------------ccEEeecCCCCcccEEEe
Q 010629          409 ------------GDQEAVVISP-GGSILTSIDLPAPPTH----------------ALVCEDFSNDGLTDVILM  452 (505)
Q Consensus       409 ------------Ge~~~~ils~-~G~vl~s~~Lp~pP~a----------------p~Iv~DfngDG~nDiIVv  452 (505)
                                  |...+.|++- +|+.+.+++++ ||..                .+-+.+|+|| .-.||+.
T Consensus       215 ~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~-p~rg~~~~WGD~ygnR~drf~~~vayLDG~-~Ps~v~~  285 (591)
T 2zux_A          215 ADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFE-PARGNVSDWGDSYGNRVDRFLAGIAYLDGQ-RPSLIMT  285 (591)
T ss_dssp             CCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECS-SCCCCGGGGTCSSSSGGGCEEEEEECTTSS-SCEEEEE
T ss_pred             cccccccceeecCCcEEEEEeCCCCCEEecccCC-CCCCcccccccccccccccceeeEEECCCC-CceEEEe
Confidence                        4556899995 99999999985 2222                4678999999 6666654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=81.38  E-value=15  Score=34.62  Aligned_cols=68  Identities=12%  Similarity=0.252  Sum_probs=43.0

Q ss_pred             cEEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEE-ee-cceEEE
Q 010629          338 DVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILA-GG-DQEAVV  415 (505)
Q Consensus       338 D~vFL~s~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA-~G-e~~~~i  415 (505)
                      .+++ +.++.|.+|++.|     ..+|+..++..          .+       +.....-.+  ..++++ .| ...+..
T Consensus        49 ~ilv-s~~~~V~~~d~~G-----~~~W~~~~~~~----------~~-------~~~~~~~~d--G~~lv~~~~~~~~v~~  103 (276)
T 3no2_A           49 EILF-SYSKGAKMITRDG-----RELWNIAAPAG----------CE-------MQTARILPD--GNALVAWCGHPSTILE  103 (276)
T ss_dssp             CEEE-ECBSEEEEECTTS-----CEEEEEECCTT----------CE-------EEEEEECTT--SCEEEEEESTTEEEEE
T ss_pred             CEEE-eCCCCEEEECCCC-----CEEEEEcCCCC----------cc-------ccccEECCC--CCEEEEecCCCCEEEE
Confidence            4555 7788899999976     89999876310          01       111111122  233444 44 567778


Q ss_pred             ECCCCCEEEEEeCCC
Q 010629          416 ISPGGSILTSIDLPA  430 (505)
Q Consensus       416 ls~~G~vl~s~~Lp~  430 (505)
                      ++++|+++.++.+..
T Consensus       104 vd~~Gk~l~~~~~~~  118 (276)
T 3no2_A          104 VNMKGEVLSKTEFET  118 (276)
T ss_dssp             ECTTSCEEEEEEECC
T ss_pred             EeCCCCEEEEEeccC
Confidence            899999999998853

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=80.29  E-value=12  Score=40.36  Aligned_cols=56  Identities=14%  Similarity=0.205  Sum_probs=36.7

Q ss_pred             eEEEECC-CCCEEEEEeCCCC------CCcccEEeecC-CCCcc-cEEE-ecCCeEEEEEEeccCCh
Q 010629          412 EAVVISP-GGSILTSIDLPAP------PTHALVCEDFS-NDGLT-DVIL-MTSNGVYGFVQTRQPGA  468 (505)
Q Consensus       412 ~~~ils~-~G~vl~s~~Lp~p------P~ap~Iv~Dfn-gDG~n-DiIV-vT~~Giygfv~~~~~g~  468 (505)
                      +++-||+ +|+++-..++...      ..+.|++.|+. .||.. ++++ .+++|. .|++-+..|.
T Consensus       279 sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~  344 (599)
T 1w6s_A          279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGI-VYTLDRTDGA  344 (599)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSE-EEEEETTTCC
T ss_pred             eEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcE-EEEEECCCCC
Confidence            6888897 9999999988643      34566777765 55632 4444 678883 3555555553

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00